Citrus Sinensis ID: 001446
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1075 | 2.2.26 [Sep-21-2011] | |||||||
| Q94FB9 | 1337 | ABC transporter D family | yes | no | 0.990 | 0.796 | 0.807 | 0.0 | |
| P55096 | 659 | ATP-binding cassette sub- | yes | no | 0.530 | 0.864 | 0.344 | 5e-94 | |
| P16970 | 659 | ATP-binding cassette sub- | yes | no | 0.530 | 0.864 | 0.342 | 1e-93 | |
| P28288 | 659 | ATP-binding cassette sub- | yes | no | 0.530 | 0.864 | 0.340 | 4e-93 | |
| Q9UBJ2 | 740 | ATP-binding cassette sub- | no | no | 0.528 | 0.767 | 0.305 | 4e-89 | |
| Q9QY44 | 741 | ATP-binding cassette sub- | no | no | 0.558 | 0.809 | 0.303 | 6e-88 | |
| Q61285 | 741 | ATP-binding cassette sub- | no | no | 0.546 | 0.792 | 0.301 | 1e-86 | |
| P33897 | 745 | ATP-binding cassette sub- | no | no | 0.519 | 0.748 | 0.308 | 6e-84 | |
| P48410 | 736 | ATP-binding cassette sub- | no | no | 0.513 | 0.75 | 0.308 | 1e-83 | |
| Q8T8P3 | 741 | ABC transporter D family | yes | no | 0.527 | 0.765 | 0.304 | 8e-76 |
| >sp|Q94FB9|AB1D_ARATH ABC transporter D family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1790 bits (4637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/1073 (80%), Positives = 962/1073 (89%), Gaps = 8/1073 (0%)
Query: 2 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 61
+RNFSP+FGKLMSKEQQLEGEYRQLHSRLRTH+ESIAFYGGE +EESHIQQKFK L HM
Sbjct: 267 IRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSESIAFYGGETREESHIQQKFKNLVSHM 326
Query: 62 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTS 121
VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF+G+L+PD STLGRA+MLSN+RYHTS
Sbjct: 327 SHVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFSGHLRPDDSTLGRAEMLSNIRYHTS 386
Query: 122 VIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSP-QRNGSRNYFSEAN 180
VIISLFQ+LGTLSISSRRLNRLSGYADRIHELM +SRELS +DKS QRN SRNY SEAN
Sbjct: 387 VIISLFQALGTLSISSRRLNRLSGYADRIHELMAVSRELSGDDKSSFQRNRSRNYLSEAN 446
Query: 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
Y+EFS VKVVTPTGNVLVE+LTL+VE GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI
Sbjct: 447 YVEFSDVKVVTPTGNVLVEDLTLRVEQGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIV 506
Query: 241 KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL 300
KPGVGSDLNKEIFYVPQRPY AVGTLRDQLIYPLTS QE E LT GMVELLKNVDLEYL
Sbjct: 507 KPGVGSDLNKEIFYVPQRPYMAVGTLRDQLIYPLTSGQESELLTEIGMVELLKNVDLEYL 566
Query: 301 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 360
LDRY PEKE+NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF AKVRA
Sbjct: 567 LDRYQPEKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFAAKVRA 626
Query: 361 MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTKSGINMIKSSETDRQSD 420
MGTSCITISHRPALVAFHDVVLSLDGEG W VH KRD S+++T + I+ +KSS+TDRQ+D
Sbjct: 627 MGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYKRDDSALLTDAEIDSVKSSDTDRQND 686
Query: 421 AMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVFPQLKSAPRILPLRVA 480
AM V++AF A+K+SA +N KAQSY +++IA SP+ D +V LP FPQ +++ R LP RVA
Sbjct: 687 AMVVQRAFAAARKESA-TNSKAQSYQTQLIARSPVVDKSVVLPRFPQPQTSQRALPSRVA 745
Query: 481 DMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGV 540
M VL+PT+FDKQGAQLLAVA LVVSRT ISDRIASLNGTTVKYVLEQDKA+FVRLIG+
Sbjct: 746 AMLNVLIPTIFDKQGAQLLAVACLVVSRTLISDRIASLNGTTVKYVLEQDKAAFVRLIGL 805
Query: 541 SVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQR 600
SVLQS ASS IAPS+RHLT RLALGWRIR+TQHLL++YLR N+FYKVF+MS SIDADQR
Sbjct: 806 SVLQSGASSIIAPSLRHLTQRLALGWRIRLTQHLLRNYLRNNAFYKVFHMSGNSIDADQR 865
Query: 601 ITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVT 660
+T DLEKLT DLSGL+TGMVKPSVDILWFTWRMK LTGQRGVAILY YMLLGLGFLR V
Sbjct: 866 LTRDLEKLTADLSGLLTGMVKPSVDILWFTWRMKLLTGQRGVAILYTYMLLGLGFLRRVA 925
Query: 661 PEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLK 720
P+FGDL EQQLEG FRFMHERL HAES+AFFGGGAREKAM++ +FR LL+HSL+LL+
Sbjct: 926 PDFGDLAGEEQQLEGKFRFMHERLNTHAESIAFFGGGAREKAMVDKKFRALLDHSLMLLR 985
Query: 721 KKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSF 780
KKWL+GILDDFVTKQLP+NVTWGLSLLYA+EHKGDRALVSTQGELAHALR+LASVVSQSF
Sbjct: 986 KKWLYGILDDFVTKQLPNNVTWGLSLLYALEHKGDRALVSTQGELAHALRYLASVVSQSF 1045
Query: 781 LAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFS 840
+AFGDILELH+KF+ELSGGINRIFEL+E LDA+Q G +S+++ + D QD +SFS
Sbjct: 1046 MAFGDILELHKKFLELSGGINRIFELDEFLDASQSG-----VTSENQTSRLDSQDLLSFS 1100
Query: 841 KLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQH 900
++DIITP+QKL+A +L+ EIV GKSLLVTGPNGSGK+SVFRVLR +WP V G LTKPS
Sbjct: 1101 EVDIITPAQKLMASKLSCEIVSGKSLLVTGPNGSGKTSVFRVLRDIWPTVCGRLTKPSLD 1160
Query: 901 IDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILD 960
I +E GSG G+F+VPQRPYTCLGTLRDQIIYPLS+EEAE RA KL+ GE + +ILD
Sbjct: 1161 I-KELGSGNGMFFVPQRPYTCLGTLRDQIIYPLSKEEAEKRAAKLYTSGESSTEAGSILD 1219
Query: 961 SYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1020
S+LKTILE VRL YLLER+ GWDA NWEDILSLGEQQRLGMARLFFH+PKFG+LDECT
Sbjct: 1220 SHLKTILENVRLVYLLERDVGGWDATTNWEDILSLGEQQRLGMARLFFHRPKFGVLDECT 1279
Query: 1021 NATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 1073
NATSVDVEEQLYR+A+DMG+TF+TSSQRPALIPFHSLELRLIDGEGNWELR+I
Sbjct: 1280 NATSVDVEEQLYRVARDMGVTFITSSQRPALIPFHSLELRLIDGEGNWELRSI 1332
|
Contributes to the transport of fatty acids and their derivatives (acyl CoAs) across the peroxisomal membrane. Provides acetate to the glyoxylate cycle in developing seedlings. Involved in pollen tube elongation, ovule fertilization, and seeds germination after imbibition (controls the switch between the opposing developmental programs of dormancy and germination), probably by promoting beta-oxidation of storage lipids during gluconeogenesis. Required for biosynthesis of jasmonic acid and conversion of indole butyric acid to indole acetic acid. Confers sensitivity to monofluoroacetic acid (FAc), a toxic acetate analog, and to 2,4-dichlorophenoxybutyric acid (2,4-DB) and indole-3-butyric acid (IBA), two precursors of auxin after beta-oxidation. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 7 |
| >sp|P55096|ABCD3_MOUSE ATP-binding cassette sub-family D member 3 OS=Mus musculus GN=Abcd3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 346 bits (888), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 211/613 (34%), Positives = 333/613 (54%), Gaps = 43/613 (7%)
Query: 478 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKY-VLEQDKASFVR 536
R++ + K++VP F K+ LL +A ++VSRT+ D NGT ++ ++ + F R
Sbjct: 66 RLSQILKIMVPRTFCKETGYLLLIAVMLVSRTY-CDVWMIQNGTLIESGIIGRSSKDFKR 124
Query: 537 LIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSID 596
+ + S + +++ L L +R+R+T++L + YL+ ++YK+ N+ ++ +
Sbjct: 125 YLFNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTRYLYEEYLQAFTYYKMGNLDNRIAN 184
Query: 597 ADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFL 656
DQ +T D+EK + L + + KP +DI+ + +++ + G +G A + AY+L+ FL
Sbjct: 185 PDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMMAYLLVSGLFL 244
Query: 657 RSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSL 716
+ G +T EQ+ EG +R+++ RL ++E +AF+ G REK I S FR+L+EH
Sbjct: 245 TRLRRPIGKMTIMEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTIHSVFRKLVEHLH 304
Query: 717 LLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVV 776
+ ++ G +D + K + V + + ++ R L ST EL ++
Sbjct: 305 NFIFFRFSMGFIDSIIAKYVATVVGYLVVSRPFLDLAHPRHLHSTHSELLEDYYQSGRML 364
Query: 777 SQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDS 836
+ A G I+ R+ L+G RI EL ++L G E + SQ + Q S
Sbjct: 365 LRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGRYERTMVSQQEKGIEGAQAS 424
Query: 837 ---------------ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFR 881
I F + + TP+ +L + L+FE+ G ++L+ GPNG GKSS+FR
Sbjct: 425 PLVPGAGEIINTDNIIKFDHVPLATPNGDILIQDLSFEVRSGANVLICGPNGCGKSSLFR 484
Query: 882 VLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELR 941
VL LWP+ G LTKP E G +FYVPQRPY LGTLRDQ+IYP +E+ + R
Sbjct: 485 VLGELWPLFGGRLTKP------ERGK---LFYVPQRPYMTLGTLRDQVIYPDGKEDQKKR 535
Query: 942 ALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRL 1001
I D LK L+ V+L ++LERE GWD+ +W D+LS GE+QR+
Sbjct: 536 G---------------ISDQVLKEYLDNVQLGHILEREG-GWDSVQDWMDVLSGGEKQRM 579
Query: 1002 GMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRL 1061
MARLF+HKP+F ILDECT+A SVDVE+ +Y + +GIT T S R +L H L +
Sbjct: 580 AMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHM 639
Query: 1062 IDGEGNWELRTIS 1074
DG GN+E + I+
Sbjct: 640 -DGRGNYEFKKIT 651
|
Mus musculus (taxid: 10090) |
| >sp|P16970|ABCD3_RAT ATP-binding cassette sub-family D member 3 OS=Rattus norvegicus GN=Abcd3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 345 bits (885), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 210/613 (34%), Positives = 332/613 (54%), Gaps = 43/613 (7%)
Query: 478 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKY-VLEQDKASFVR 536
R++ + K++VP F K+ L+ +A ++VSRT+ D NGT ++ ++ + F R
Sbjct: 66 RLSQILKIMVPRTFCKETGYLILIAVMLVSRTY-CDVWMIQNGTLIESGIIGRSSKDFKR 124
Query: 537 LIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSID 596
+ + S + +++ L L +R+R+T++L + YL+ ++YK+ N+ ++ +
Sbjct: 125 YLFNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTRYLYEEYLQAFTYYKMGNLDNRIAN 184
Query: 597 ADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFL 656
DQ +T D+EK + L + + KP +DI+ + +++ + G +G A + AY+L+ FL
Sbjct: 185 PDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMMAYLLVSGLFL 244
Query: 657 RSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSL 716
+ G +T EQ+ EG +RF++ RL ++E +AF+ G REK I S FR+L+EH
Sbjct: 245 TRLRRPIGKMTIMEQKYEGEYRFVNSRLITNSEEIAFYNGNKREKQTIHSVFRKLVEHLH 304
Query: 717 LLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVV 776
+ ++ G +D + K + V + + ++ R L ST EL ++
Sbjct: 305 NFIFFRFSMGFIDSIIAKYIATVVGYLVVSRPFLDLAHPRHLHSTHSELLEDYYQSGRML 364
Query: 777 SQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDS 836
+ A G I+ R+ L+G RI EL ++L G E + SQ Q S
Sbjct: 365 LRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGKYERTMVSQQDKGIEGAQAS 424
Query: 837 ---------------ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFR 881
I F + + TP+ +L + L+FE+ G ++L+ GPNG GKSS+FR
Sbjct: 425 PLIPGAGEIINADNIIKFDHVPLATPNGDILIQDLSFEVRSGANVLICGPNGCGKSSLFR 484
Query: 882 VLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELR 941
VL LWP+ G LTKP E G +FYVPQRPY LGTLRDQ+IYP +E+ + +
Sbjct: 485 VLGELWPLFGGHLTKP------ERGK---LFYVPQRPYMTLGTLRDQVIYPDGKEDQKKK 535
Query: 942 ALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRL 1001
I D LK L+ V+L ++LERE GWD+ +W D+LS GE+QR+
Sbjct: 536 G---------------ISDQVLKGYLDNVQLGHILEREG-GWDSVQDWMDVLSGGEKQRM 579
Query: 1002 GMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRL 1061
MARLF+HKP+F ILDECT+A SVDVE+ +Y + +GIT T S R +L H L +
Sbjct: 580 AMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHM 639
Query: 1062 IDGEGNWELRTIS 1074
DG GN+E + I+
Sbjct: 640 -DGRGNYEFKKIT 651
|
Rattus norvegicus (taxid: 10116) |
| >sp|P28288|ABCD3_HUMAN ATP-binding cassette sub-family D member 3 OS=Homo sapiens GN=ABCD3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (880), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 209/613 (34%), Positives = 331/613 (53%), Gaps = 43/613 (7%)
Query: 478 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKY-VLEQDKASFVR 536
R+ + K++VP F K+ L+ +A ++VSRT+ D NGT ++ ++ + + F R
Sbjct: 66 RLIQILKIMVPRTFCKETGYLVLIAVMLVSRTY-CDVWMIQNGTLIESGIIGRSRKDFKR 124
Query: 537 LIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSID 596
+ + S + +++ L L +R+R+T++L + YL+ ++YK+ N+ ++ +
Sbjct: 125 YLLNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTKYLYEEYLQAFTYYKMGNLDNRIAN 184
Query: 597 ADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFL 656
DQ +T D+EK + L + + KP +DI+ + +++ + G +G A + AY+++ FL
Sbjct: 185 PDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMMAYLVVSGLFL 244
Query: 657 RSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSL 716
+ G +T EQ+ EG +R+++ RL ++E +AF+ G REK + S FR+L+EH
Sbjct: 245 TRLRRPIGKMTITEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTVHSVFRKLVEHLH 304
Query: 717 LLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVV 776
+ ++ G +D + K L V + + ++ R L ST EL ++
Sbjct: 305 NFILFRFSMGFIDSIIAKYLATVVGYLVVSRPFLDLSHPRHLKSTHSELLEDYYQSGRML 364
Query: 777 SQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQ-- 834
+ A G I+ R+ L+G RI EL ++L G E + SQ + Q
Sbjct: 365 LRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGKYERTMVSQQEKGIEGVQVI 424
Query: 835 -------------DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFR 881
+ I F + + TP+ +L R L FE+ G ++L+ GPNG GKSS+FR
Sbjct: 425 PLIPGAGEIIIADNIIKFDHVPLATPNGDVLIRDLNFEVRSGANVLICGPNGCGKSSLFR 484
Query: 882 VLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELR 941
VL LWP+ G LTKP E G +FYVPQRPY LGTLRDQ+IYP RE+ + +
Sbjct: 485 VLGELWPLFGGRLTKP------ERGK---LFYVPQRPYMTLGTLRDQVIYPDGREDQKRK 535
Query: 942 ALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRL 1001
I D LK L+ V+L ++LERE GWD+ +W D+LS GE+QR+
Sbjct: 536 G---------------ISDLVLKEYLDNVQLGHILEREG-GWDSVQDWMDVLSGGEKQRM 579
Query: 1002 GMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRL 1061
MARLF+HKP+F ILDECT+A SVDVE +Y + +GIT T S R +L H L +
Sbjct: 580 AMARLFYHKPQFAILDECTSAVSVDVEGYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHM 639
Query: 1062 IDGEGNWELRTIS 1074
DG GN+E + I+
Sbjct: 640 -DGRGNYEFKQIT 651
|
Probable transporter. The nucleotide-binding fold acts as an ATP-binding subunit with ATPase activity. Homo sapiens (taxid: 9606) |
| >sp|Q9UBJ2|ABCD2_HUMAN ATP-binding cassette sub-family D member 2 OS=Homo sapiens GN=ABCD2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 330 bits (846), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 192/628 (30%), Positives = 338/628 (53%), Gaps = 60/628 (9%)
Query: 481 DMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGV 540
++ K+L P + + L + ++SRT++S +A L+G VK ++E+ +F+ +
Sbjct: 90 ELRKILFPKLVTTETGWLCLHSVALISRTFLSIYVAGLDGKIVKSIVEKKPRTFIIKLIK 149
Query: 541 SVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQR 600
++ + ++F+ +IR+L +LAL +R R+ H ++Y ++YKV NM + + DQ
Sbjct: 150 WLMIAIPATFVNSAIRYLECKLALAFRTRLVDHAYETYFTNQTYYKVINMDGRLANPDQS 209
Query: 601 ITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGL------G 654
+T D+ + ++ L + + KP +D++ ++ + RG + + +L GL
Sbjct: 210 LTEDIMMFSQSVAHLYSNLTKPILDVMLTSYTLIQTATSRGASPIGPTLLAGLVVYATAK 269
Query: 655 FLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEH 714
L++ +P+FG L + E +G R++H R+ A+ E +AF+ G E ++ ++ L +
Sbjct: 270 VLKACSPKFGKLVAEEAHRKGYLRYVHSRIIANVEEIAFYRGHKVEMKQLQKSYKALADQ 329
Query: 715 SLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLAS 774
L+L K+ + +++ F+ K + + + + + G Q ++ + R A
Sbjct: 330 MNLILSKRLWYIMIEQFLMKYVWSSSGLIMVAIPIITATGFADGEDGQKQVMVSERTEAF 389
Query: 775 VVSQSFLAFGD-----ILELHRKFVELSGGINRIFELEELLDAAQPGDDE----ISGSSQ 825
+++ LA G I+ +++ EL+G R++ + + D + G + I S
Sbjct: 390 TTARNLLASGADAIERIMSSYKEVTELAGYTARVYNMFWVFDEVKRGIYKRTAVIQESES 449
Query: 826 HKWNST-----------------DYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLV 868
H N D I + IITP+ +++A +L F++ G LL+
Sbjct: 450 HSKNGAKVELPLSDTLAIKGKVIDVDHGIICENVPIITPAGEVVASRLNFKVEEGMHLLI 509
Query: 869 TGPNGSGKSSVFRVLRGLWPVVSGSLTKPS-QHIDEEAGSGCGIFYVPQRPYTCLGTLRD 927
TGPNG GKSS+FR+L GLWPV G L KP QH+ FY+PQRPY LG+LRD
Sbjct: 510 TGPNGCGKSSLFRILSGLWPVYEGVLYKPPPQHM----------FYIPQRPYMSLGSLRD 559
Query: 928 QIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 987
Q+IYP S ++ +H KG D L+ IL V L ++++RE GWDA +
Sbjct: 560 QVIYPDSVDD-------MHDKG--------YTDQDLERILHNVHLYHIVQREG-GWDAVM 603
Query: 988 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQ 1047
+W+D+LS GE+QR+GMAR+F+HKPK+ +LDECT+A S+DVE ++++ AK GI+ ++ +
Sbjct: 604 DWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAKGAGISLLSITH 663
Query: 1048 RPALIPFHSLELRLIDGEGNWELRTISS 1075
RP+L +H+ L+ DGEG W + +
Sbjct: 664 RPSLWKYHTHLLQF-DGEGGWRFEQLDT 690
|
Probable transporter. Homo sapiens (taxid: 9606) |
| >sp|Q9QY44|ABCD2_RAT ATP-binding cassette sub-family D member 2 OS=Rattus norvegicus GN=Abcd2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 326 bits (835), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 208/686 (30%), Positives = 355/686 (51%), Gaps = 86/686 (12%)
Query: 432 KKDSAFSNPKAQS----YVSEVIAASPIADHNVPLPVFPQLKSAPRILPLRVADMFKVLV 487
+K A P A++ + +E+I P N F QL L LR K+L
Sbjct: 50 RKAKAEDYPPAENRERLHCTEIICKKPAPGLNADF--FKQL------LELR-----KILF 96
Query: 488 PTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAA 547
P + + L + ++SRT++S +A L+G VK ++E+ +F+ + ++ +
Sbjct: 97 PKLVTTETGWLCLHSVALISRTFLSIYVAGLDGKIVKSIVEKKPRTFIIKLVKWLMIAVP 156
Query: 548 SSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEK 607
++F+ +IR+L +LAL +R R+ H ++Y ++YKV NM + + DQ +T D+
Sbjct: 157 ATFVNSAIRYLECKLALAFRTRLVDHAYETYFANQTYYKVINMDGRLANPDQSLTEDIMM 216
Query: 608 LTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGL------GFLRSVTP 661
+ ++ L + + KP +D++ ++ + RG + + +L GL L++ +P
Sbjct: 217 FSQSVAHLYSNLTKPILDVILTSYTLIRTATSRGASPIGPTLLAGLVVYATAKVLKACSP 276
Query: 662 EFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKK 721
+FG L + E +G R++H R+ A+ E +AF+ G E ++ ++ L L+L K
Sbjct: 277 KFGTLVAEEAHRKGYLRYVHSRIIANVEEIAFYRGHKVEMKQLQKCYKALAYQMNLILSK 336
Query: 722 KWLFGILDDFVTKQLPHN---VTWGLSLLYA-------MEHKGDRALVSTQGE-LAHALR 770
+ + +++ F+ K + + + ++ A +E +A+VS + E A
Sbjct: 337 RLWYIMIEQFLMKYVWSGCGLIMVAIPIITATGFADGDLEDGPKQAMVSDRTEAFTTARN 396
Query: 771 FLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLD-----------AAQPGDDE 819
LAS A I+ +++ EL+G R++ + + D +P ++
Sbjct: 397 LLASGAD----AIERIMSSYKEITELAGYTARVYNMFWVFDEVKRGIYKRTVTQEPENNS 452
Query: 820 ISGSSQH---------KWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTG 870
SG K D I + IITP+ +++A L F++ G LL+TG
Sbjct: 453 KSGGGLELPLSDTLAIKGTVIDVDHGILCENVPIITPAGEVVASSLNFKVEEGMHLLITG 512
Query: 871 PNGSGKSSVFRVLRGLWPVVSGSLTKPS-QHIDEEAGSGCGIFYVPQRPYTCLGTLRDQI 929
PNG GKSS+FR+L GLWPV G L KP QH+ FY+PQRPY LG+LRDQ+
Sbjct: 513 PNGCGKSSLFRILSGLWPVYEGVLYKPPPQHM----------FYIPQRPYMSLGSLRDQV 562
Query: 930 IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 989
IYP S ++ +H KG D L+ IL V L ++++RE GWDA ++W
Sbjct: 563 IYPDSVDD-------MHEKG--------YTDRDLEHILHSVHLYHIVQREG-GWDAVMDW 606
Query: 990 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRP 1049
+D+LS GE+QR+GMAR+F+HKPK+ +LDECT+A S+DVE ++++ A GI+ ++ + RP
Sbjct: 607 KDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAIGAGISLLSITHRP 666
Query: 1050 ALIPFHSLELRLIDGEGNWELRTISS 1075
+L +H+ L+ DGEG W + +
Sbjct: 667 SLWKYHTHLLQF-DGEGGWRFEQLDT 691
|
Probable transporter. Rattus norvegicus (taxid: 10116) |
| >sp|Q61285|ABCD2_MOUSE ATP-binding cassette sub-family D member 2 OS=Mus musculus GN=Abcd2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (825), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 202/669 (30%), Positives = 349/669 (52%), Gaps = 82/669 (12%)
Query: 445 YVSEVIAASPIADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFL 504
+ +E+I P N F QL L LR K+L P + + L +
Sbjct: 67 HCTEIICKKPAPGLNAAF--FKQL------LELR-----KILFPKLVTTETGWLCLHSVA 113
Query: 505 VVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLAL 564
++SRT++S +A L+G VK ++E+ +F+ + ++ + ++F+ +IR+L +LAL
Sbjct: 114 LISRTFLSIYVAGLDGKIVKSIVEKKPRTFIIKLIKWLMIAIPATFVNSAIRYLECKLAL 173
Query: 565 GWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSV 624
+R R+ H ++Y ++YKV NM + + DQ +T D+ + ++ L + + KP +
Sbjct: 174 AFRTRLVDHAYETYFANQTYYKVINMDGRLANPDQSLTEDIMMFSQSVAHLYSNLTKPIL 233
Query: 625 DILWFTWRMKALTGQRGVAILYAYMLLGL------GFLRSVTPEFGDLTSREQQLEGTFR 678
D++ ++ + RG + + +L GL L++ +P+FG L + E +G R
Sbjct: 234 DVILTSYTLIRTATSRGASPIGPTLLAGLVVYATAKVLKACSPKFGSLVAEEAHRKGYLR 293
Query: 679 FMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPH 738
++H R+ A+ E +AF+ G E ++ ++ L L+L K+ + +++ F+ K +
Sbjct: 294 YVHSRIIANVEEIAFYRGHKVEMKQLQKCYKALAYQMNLILSKRLWYIMIEQFLMKYVWS 353
Query: 739 N---VTWGLSLLYA-------MEHKGDRALVSTQGE-LAHALRFLASVVSQSFLAFGDIL 787
+ + + ++ A +E +A+VS + E A LAS A I+
Sbjct: 354 SCGLIMVAIPIITATGFADGDLEDGPKQAMVSDRTEAFTTARNLLASGAD----AIERIM 409
Query: 788 ELHRKFVELSGGINRIFELEELLDAAQPG--------------------DDEISGSSQHK 827
+++ EL+G R++ + + D + G + +S + K
Sbjct: 410 SSYKEITELAGYTARVYNMFWVFDEVKRGIYKRTVTQEPENHSKRGGNLELPLSDTLAIK 469
Query: 828 WNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLW 887
D I + IITP+ +++A +L F++ G LL+TGPNG GKSS+FR+L GLW
Sbjct: 470 GTVIDVDHGIICENVPIITPAGEVVASRLNFKVEEGMHLLITGPNGCGKSSLFRILSGLW 529
Query: 888 PVVSGSLTKPS-QHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLH 946
PV G L KP QH+ FY+PQRPY LG+LRDQ+IYP S ++ +
Sbjct: 530 PVYEGVLYKPPPQHM----------FYIPQRPYMSLGSLRDQVIYPDSADD-------MR 572
Query: 947 GKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARL 1006
KG D L+ IL V L ++++RE GWDA ++W+D+LS GE+QR+GMAR+
Sbjct: 573 EKG--------YTDQDLERILHSVHLYHIVQREG-GWDAVMDWKDVLSGGEKQRMGMARM 623
Query: 1007 FFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEG 1066
F+HKPK+ +LDECT+A S+DVE ++++ A GI+ ++ + RP+L +H+ L+ DGEG
Sbjct: 624 FYHKPKYALLDECTSAVSIDVEGKIFQAAIGAGISLLSITHRPSLWKYHTHLLQF-DGEG 682
Query: 1067 NWELRTISS 1075
W + +
Sbjct: 683 GWRFEQLDT 691
|
Probable transporter. Mus musculus (taxid: 10090) |
| >sp|P33897|ABCD1_HUMAN ATP-binding cassette sub-family D member 1 OS=Homo sapiens GN=ABCD1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 313 bits (801), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 195/633 (30%), Positives = 335/633 (52%), Gaps = 75/633 (11%)
Query: 488 PTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAA 547
P V ++ L + +VSRT++S +A L+G + ++ +D +F + +L +
Sbjct: 84 PRVLCRETGLLALHSAALVSRTFLSVYVARLDGRLARCIVRKDPRAFGWQLLQWLLIALP 143
Query: 548 SSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEK 607
++F+ +IR+L +LAL +R R+ H + Y + ++Y+V NM + + DQ +T D+
Sbjct: 144 ATFVNSAIRYLEGQLALSFRSRLVAHAYRLYFSQQTYYRVSNMDGRLRNPDQSLTEDVVA 203
Query: 608 LTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGL------GFLRSVTP 661
++ L + + KP +D+ ++ + RG + + GL LR+ +P
Sbjct: 204 FAASVAHLYSNLTKPLLDVAVTSYTLLRAARSRGAGTAWPSAIAGLVVFLTANVLRAFSP 263
Query: 662 EFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEH-SLLLLK 720
+FG+L + E + +G R+MH R+ A++E +AF+GG E A+++ +++L +L+LL+
Sbjct: 264 KFGELVAEEARRKGELRYMHSRVVANSEEIAFYGGHEVELALLQRSYQDLASQINLILLE 323
Query: 721 KKWLFGILDDFVTK-----------QLPHNVTWGLS------LLYAMEHKGDRALVSTQG 763
+ W + +L+ F+ K +P G S + A K + LVS +
Sbjct: 324 RLW-YVMLEQFLMKYVWSASGLLMVAVPIITATGYSESDAEAVKKAALEKKEEELVSERT 382
Query: 764 ELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEEL-------------- 809
E A ++++ + A I+ +++ EL+G R+ E+ ++
Sbjct: 383 E---AFTIARNLLTAAADAIERIMSSYKEVTELAGYTARVHEMFQVFEDVQRCHFKRPRE 439
Query: 810 LDAAQPGDDEIS-------GSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVP 862
L+ AQ G I G + + D + I + I+TPS +++ L +
Sbjct: 440 LEDAQAGSGTIGRSGVRVEGPLKIRGQVVDVEQGIICENIPIVTPSGEVVVASLNIRVEE 499
Query: 863 GKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCL 922
G LL+TGPNG GKSS+FR+L GLWP G L KP +FY+PQRPY +
Sbjct: 500 GMHLLITGPNGCGKSSLFRILGGLWPTYGGVLYKPPPQ---------RMFYIPQRPYMSV 550
Query: 923 GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVG 982
G+LRDQ+IYP S E+ + KG D L+ IL+ V L ++L+RE G
Sbjct: 551 GSLRDQVIYPDSVED-------MQRKGYSEQD--------LEAILDVVHLHHILQREG-G 594
Query: 983 WDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITF 1042
W+A +W+D+LS GE+QR+GMAR+F+H+PK+ +LDECT+A S+DVE ++++ AKD GI
Sbjct: 595 WEAMCDWKDVLSGGEKQRIGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGIAL 654
Query: 1043 VTSSQRPALIPFHSLELRLIDGEGNWELRTISS 1075
++ + RP+L +H+ L+ DGEG W+ + S
Sbjct: 655 LSITHRPSLWKYHTHLLQF-DGEGGWKFEKLDS 686
|
Probable transporter. The nucleotide-binding fold acts as an ATP-binding subunit with ATPase activity. Homo sapiens (taxid: 9606) |
| >sp|P48410|ABCD1_MOUSE ATP-binding cassette sub-family D member 1 OS=Mus musculus GN=Abcd1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 312 bits (799), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 197/639 (30%), Positives = 337/639 (52%), Gaps = 87/639 (13%)
Query: 488 PTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAA 547
P V ++ L + +VSRT++S +A L+G + ++ +D +F + +L +
Sbjct: 84 PRVLCRETGLLALHSAALVSRTFLSVYVARLDGRLARCIVRKDPRAFSWQLLQWLLIALP 143
Query: 548 SSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEK 607
++FI +IR+L +LAL +R R+ H Y + ++Y+V NM + + DQ +T D+
Sbjct: 144 ATFINSAIRYLEGQLALSFRSRLVAHAYGLYFSQQTYYRVSNMDGRLRNPDQSLTEDVVA 203
Query: 608 LTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGL------GFLRSVTP 661
++ L + + KP +D+ ++ + RG + + GL LR+ +P
Sbjct: 204 FAASVAHLYSNLTKPLLDVAVTSYTLLRAARSRGAGTAWPSAIAGLVVFLTANVLRAFSP 263
Query: 662 EFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEH-SLLLLK 720
+FG+L + E + +G R+MH R+ A++E +AF+GG E A+++ +++L +L+LL+
Sbjct: 264 KFGELVAEEARRKGELRYMHSRVVANSEEIAFYGGHEVELALLQHSYQDLASQINLILLE 323
Query: 721 KKWLFGILDDFVTKQLPHNVTWGLSLLY-----------------------AMEHKGDRA 757
+ W + +L+ F+ K + W S L A+E K +
Sbjct: 324 RLW-YVMLEQFLMKYV-----WSASGLLMVAVPIITATGYAESDSEAMKKAALEMK-EEE 376
Query: 758 LVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEEL-------- 809
LVS + E A ++++ + A I+ +++ EL+G R++E+ ++
Sbjct: 377 LVSERTE---AFTIARNLLTAAADATERIMSSYKEVTELAGYTARVYEMFQVFEDVKHCR 433
Query: 810 ------LDAAQPGDDEISGSSQH-------KWNSTDYQDSISFSKLDIITPSQKLLARQL 856
L+ AQ G + S H + D + I + IITP+ +++ L
Sbjct: 434 FKRTGDLEEAQAGPGVMVQSGVHVEGPLKIQGQVVDVEQGIICENIPIITPTGEVVVASL 493
Query: 857 TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 916
+ G LL+TGPNG GKSS+FR+L GLWP SG L KP +FY+PQ
Sbjct: 494 NIRVEEGMHLLITGPNGCGKSSLFRILGGLWPTYSGVLYKPPPQ---------RMFYIPQ 544
Query: 917 RPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLL 976
RPY +G+LRDQ+IYP S E+ ++ G E+ L+ IL V L ++L
Sbjct: 545 RPYMSVGSLRDQVIYPDSAED-----MRRKGCSEQ----------QLEAILGIVHLRHIL 589
Query: 977 EREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK 1036
+RE GW+A +W+D+LS GE+QR+GMAR+F+H+PK+ +LDECT+A S+DVE ++++ AK
Sbjct: 590 QREG-GWEAVCDWKDVLSGGEKQRIGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK 648
Query: 1037 DMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTISS 1075
D GI ++ + RP+L +H+ L+ DGEG W+ + S
Sbjct: 649 DAGIALLSITHRPSLWKYHTHLLQF-DGEGGWKFEKLDS 686
|
Probable transporter. Could be involved in the import of VLCFA-CoA synthetase into the peroxisomal membrane. Mus musculus (taxid: 10090) |
| >sp|Q8T8P3|ABCD2_DICDI ABC transporter D family member 2 OS=Dictyostelium discoideum GN=abcD2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 200/656 (30%), Positives = 334/656 (50%), Gaps = 89/656 (13%)
Query: 478 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRL 537
R+A + ++++P++ K+ LL + L+ +RT +S IA + G + ++ +
Sbjct: 102 RLAKIIRIVIPSLKSKEFLSLLYLTALLFARTMLSVSIAEIAGKNAQNLVARKWKEMRNG 161
Query: 538 IGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNM--SSKSI 595
+ L S +SF+ S+++ T LAL +R R+++++ K YL +FYK ++ + +
Sbjct: 162 VLKFALVSIPASFVNASLKYETDMLALRFRKRLSEYVHKEYLEGVNFYKASHLGGADRID 221
Query: 596 DADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGF 655
+ADQR+T D+E+ +S L T + KP +D++ FT ++ + G ++++Y ++ GF
Sbjct: 222 NADQRVTSDIEQFCNSMSSLYTTLFKPFLDLVLFTRKLVVVMGWGSPLLMFSYFIVS-GF 280
Query: 656 LRS-VTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEH 714
L+ + P FG LT+++ +LEG +R +H+RL +AE +AF+ G +E+ +I F ++ H
Sbjct: 281 LKKLIMPPFGRLTAKQSELEGNYRTVHQRLITNAEEIAFYDGSRKERQIINLSFGDIYNH 340
Query: 715 SLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEH-KGDRALVSTQGELAHALRFLA 773
+ + K L GI D F+ K V +G +L +G ST+ + +R
Sbjct: 341 TGYVSYLKCLVGIFDGFLVKYCASIVGYGCMVLPIYTGIRGSSGKDSTELTKDY-IRNTQ 399
Query: 774 SVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQ------------------- 814
+V+ S A G ++ L K ++G +R+ EL E++ + +
Sbjct: 400 LMVALS-QAIGQLVLLGNKVTLMAGYTSRVSELLEMIKSIKERGTSQFTIVHEDDVPNPL 458
Query: 815 ---PGDDEISGSSQ-----HKWNSTDYQDSI---------------------SFSKLDII 845
P +D+ S W Q I +F + D I
Sbjct: 459 TNSPVNDKYDTSVDMSSWLEDWRKRSDQTRIVKRQQSNRSSASGATTVYGGGTFVEGDFI 518
Query: 846 --------TPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKP 897
+P KLL L F+++P +++++TGPNGSGKSS+FR+L LWP+ G++ KP
Sbjct: 519 KFENVSIVSPEGKLLVENLDFQVMPNQNVMITGPNGSGKSSLFRILGELWPLHCGTVIKP 578
Query: 898 SQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTN 957
+ I +VPQ+PY LGTLRDQIIYP S H +KL
Sbjct: 579 RKE---------DILFVPQKPYLVLGTLRDQIIYPHS-----------HDDMKKL----G 614
Query: 958 ILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILD 1017
+ D L+ +L V + + R+ WD +W LS G++QR+ MARLF+H+P++ ILD
Sbjct: 615 VTDDDLQHLLATVDPNLTIIRQW-NWDDTKDWFTALSGGQKQRIAMARLFYHRPQYAILD 673
Query: 1018 ECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 1073
ECT+A S +VE ++Y K +GIT T S RP L +H L L +G G WE I
Sbjct: 674 ECTSAVSDEVEGKIYETCKKLGITLFTVSHRPQLRAYHDYVL-LFNGRGGWEWSKI 728
|
Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1075 | ||||||
| 356540293 | 1339 | PREDICTED: ABC transporter D family memb | 0.995 | 0.799 | 0.830 | 0.0 | |
| 356540295 | 1354 | PREDICTED: ABC transporter D family memb | 0.995 | 0.790 | 0.819 | 0.0 | |
| 224083701 | 1309 | peroxisomal membrane ABC transporter fam | 0.973 | 0.799 | 0.826 | 0.0 | |
| 255549548 | 1339 | peroxisomal abc transporter, putative [R | 0.998 | 0.801 | 0.837 | 0.0 | |
| 356528475 | 1342 | PREDICTED: ABC transporter D family memb | 0.995 | 0.797 | 0.822 | 0.0 | |
| 357463371 | 1349 | ABC transporter D family member [Medicag | 0.991 | 0.790 | 0.809 | 0.0 | |
| 357463369 | 1356 | ABC transporter D family member [Medicag | 0.991 | 0.786 | 0.804 | 0.0 | |
| 356512707 | 1319 | PREDICTED: ABC transporter D family memb | 0.976 | 0.796 | 0.818 | 0.0 | |
| 18420546 | 1337 | ABC transporter D family member 1 [Arabi | 0.990 | 0.796 | 0.807 | 0.0 | |
| 18478510 | 1337 | peroxisomal ABC transporter [Arabidopsis | 0.990 | 0.796 | 0.807 | 0.0 |
| >gi|356540293|ref|XP_003538624.1| PREDICTED: ABC transporter D family member 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1847 bits (4783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 894/1076 (83%), Positives = 975/1076 (90%), Gaps = 6/1076 (0%)
Query: 2 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 61
+RNFSP+FGKLMSKEQQLEGEYRQLH+RLRTH+ESIAFYGGE KEE+HIQQKFK L RHM
Sbjct: 264 IRNFSPSFGKLMSKEQQLEGEYRQLHARLRTHSESIAFYGGERKEETHIQQKFKTLVRHM 323
Query: 62 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTS 121
VLHDHWWFGMIQD LLKYLGATVAVILIIEPFF+G+L+PD+STLGRA MLSNLRYHTS
Sbjct: 324 YSVLHDHWWFGMIQDLLLKYLGATVAVILIIEPFFSGHLRPDSSTLGRADMLSNLRYHTS 383
Query: 122 VIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSI--EDKSPQRNGSRNYFSEA 179
VIISLFQSLGTLSIS+RRLNRLSGYADRI+ELM +SRELS+ E S QRN SRN EA
Sbjct: 384 VIISLFQSLGTLSISARRLNRLSGYADRIYELMAVSRELSLVNEKSSLQRNASRNCIREA 443
Query: 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 239
NYIEF GVKVVTPTGNVLV++LTL+VE GSNLLITGPNGSGKSSLFRVLGGLWPL+SGHI
Sbjct: 444 NYIEFDGVKVVTPTGNVLVDDLTLRVESGSNLLITGPNGSGKSSLFRVLGGLWPLISGHI 503
Query: 240 AKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 299
KPG+GSDLN EIFYVPQRPYTAVGTLRDQLIYPLT DQE+EPLT GMVELLKNVDLEY
Sbjct: 504 VKPGIGSDLNNEIFYVPQRPYTAVGTLRDQLIYPLTEDQEIEPLTDRGMVELLKNVDLEY 563
Query: 300 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 359
LLDRYPPE+E+NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR
Sbjct: 564 LLDRYPPEREVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 623
Query: 360 AMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTKSGINMIKSSETDRQS 419
AMGTSCITISHRPALVAFHDVVLSLDGEG W VH KR+GSS T+ GI+ +K+SET RQS
Sbjct: 624 AMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYKREGSS--TEVGIDTMKASETKRQS 681
Query: 420 DAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVFPQLKSAPRILPLRV 479
DA AV++AF +KKDSAFSNPKAQSY +EVI++SP +H +P V PQL R+LPLRV
Sbjct: 682 DAKAVQRAFSMSKKDSAFSNPKAQSYFAEVISSSPSMNHTIPPSVVPQLHCNTRVLPLRV 741
Query: 480 ADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIG 539
A M KVLVPTV DKQGAQLLAVAFLVVSRTW+SDRIASLNGTTVK+VLEQDKASF+RLIG
Sbjct: 742 AAMCKVLVPTVLDKQGAQLLAVAFLVVSRTWVSDRIASLNGTTVKFVLEQDKASFIRLIG 801
Query: 540 VSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQ 599
+SVLQS ASSFIAPSIRHLTARLALGWR+R+TQHLLK+YLR N+FYKVF+M++K+IDADQ
Sbjct: 802 LSVLQSVASSFIAPSIRHLTARLALGWRVRLTQHLLKNYLRNNAFYKVFHMANKNIDADQ 861
Query: 600 RITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSV 659
RITHDLEKLT DLSGLVTGMVKPSVDILWFTWRMK LTGQRGVAILYAYMLLGLGFLR+V
Sbjct: 862 RITHDLEKLTADLSGLVTGMVKPSVDILWFTWRMKLLTGQRGVAILYAYMLLGLGFLRTV 921
Query: 660 TPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLL 719
TP+FG+L S+EQQLEGTFRFMHERL HAESVAFFGGGAREKAM+ESRFRELL HS LL
Sbjct: 922 TPDFGNLISQEQQLEGTFRFMHERLCTHAESVAFFGGGAREKAMVESRFRELLSHSKYLL 981
Query: 720 KKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQS 779
KKKWLFGILDDF+TKQLPHNVTW LSLLYAMEHKGDRA +STQGELAHALRFLASVVSQS
Sbjct: 982 KKKWLFGILDDFITKQLPHNVTWLLSLLYAMEHKGDRASISTQGELAHALRFLASVVSQS 1041
Query: 780 FLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDY--QDSI 837
FLAFGDILELHRKFVELSGGINRIFELEELLDA+Q G S +S DY +D+I
Sbjct: 1042 FLAFGDILELHRKFVELSGGINRIFELEELLDASQSGTSGDSINSSITSPIWDYHGKDAI 1101
Query: 838 SFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKP 897
SF +DI+TP+QK+LAR+LT +I GKSLLVTGPNGSGKSS+FRVLRGLWP+ SG L++P
Sbjct: 1102 SFCMVDIVTPTQKMLARELTCDIEFGKSLLVTGPNGSGKSSIFRVLRGLWPIASGRLSRP 1161
Query: 898 SQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTN 957
S+ +D EAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEA+ +ALK+HGKGEK D
Sbjct: 1162 SEDVDLEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAQFQALKMHGKGEKHPDLRI 1221
Query: 958 ILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILD 1017
+LD++L+ ILE VRL+YLLER+ GWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILD
Sbjct: 1222 MLDTHLQVILENVRLNYLLERDNNGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILD 1281
Query: 1018 ECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 1073
ECTNATSVDVEE LY LA MGIT VTSSQRPALIPFHS+EL LIDGEGNWELR+I
Sbjct: 1282 ECTNATSVDVEEHLYGLANKMGITVVTSSQRPALIPFHSMELHLIDGEGNWELRSI 1337
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540295|ref|XP_003538625.1| PREDICTED: ABC transporter D family member 1-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1837 bits (4758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 894/1091 (81%), Positives = 975/1091 (89%), Gaps = 21/1091 (1%)
Query: 2 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 61
+RNFSP+FGKLMSKEQQLEGEYRQLH+RLRTH+ESIAFYGGE KEE+HIQQKFK L RHM
Sbjct: 264 IRNFSPSFGKLMSKEQQLEGEYRQLHARLRTHSESIAFYGGERKEETHIQQKFKTLVRHM 323
Query: 62 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTS 121
VLHDHWWFGMIQD LLKYLGATVAVILIIEPFF+G+L+PD+STLGRA MLSNLRYHTS
Sbjct: 324 YSVLHDHWWFGMIQDLLLKYLGATVAVILIIEPFFSGHLRPDSSTLGRADMLSNLRYHTS 383
Query: 122 VIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSI--EDKSPQRNGSRNYFSEA 179
VIISLFQSLGTLSIS+RRLNRLSGYADRI+ELM +SRELS+ E S QRN SRN EA
Sbjct: 384 VIISLFQSLGTLSISARRLNRLSGYADRIYELMAVSRELSLVNEKSSLQRNASRNCIREA 443
Query: 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 239
NYIEF GVKVVTPTGNVLV++LTL+VE GSNLLITGPNGSGKSSLFRVLGGLWPL+SGHI
Sbjct: 444 NYIEFDGVKVVTPTGNVLVDDLTLRVESGSNLLITGPNGSGKSSLFRVLGGLWPLISGHI 503
Query: 240 AKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 299
KPG+GSDLN EIFYVPQRPYTAVGTLRDQLIYPLT DQE+EPLT GMVELLKNVDLEY
Sbjct: 504 VKPGIGSDLNNEIFYVPQRPYTAVGTLRDQLIYPLTEDQEIEPLTDRGMVELLKNVDLEY 563
Query: 300 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 359
LLDRYPPE+E+NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR
Sbjct: 564 LLDRYPPEREVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 623
Query: 360 AMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTKSGINMIKSSETDRQS 419
AMGTSCITISHRPALVAFHDVVLSLDGEG W VH KR+GSS T+ GI+ +K+SET RQS
Sbjct: 624 AMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYKREGSS--TEVGIDTMKASETKRQS 681
Query: 420 DAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVFPQLKSAPRILPLRV 479
DA AV++AF +KKDSAFSNPKAQSY +EVI++SP +H +P V PQL R+LPLRV
Sbjct: 682 DAKAVQRAFSMSKKDSAFSNPKAQSYFAEVISSSPSMNHTIPPSVVPQLHCNTRVLPLRV 741
Query: 480 ADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIG 539
A M KVLVPTV DKQGAQLLAVAFLVVSRTW+SDRIASLNGTTVK+VLEQDKASF+RLIG
Sbjct: 742 AAMCKVLVPTVLDKQGAQLLAVAFLVVSRTWVSDRIASLNGTTVKFVLEQDKASFIRLIG 801
Query: 540 VSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQ 599
+SVLQS ASSFIAPSIRHLTARLALGWR+R+TQHLLK+YLR N+FYKVF+M++K+IDADQ
Sbjct: 802 LSVLQSVASSFIAPSIRHLTARLALGWRVRLTQHLLKNYLRNNAFYKVFHMANKNIDADQ 861
Query: 600 RITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSV 659
RITHDLEKLT DLSGLVTGMVKPSVDILWFTWRMK LTGQRGVAILYAYMLLGLGFLR+V
Sbjct: 862 RITHDLEKLTADLSGLVTGMVKPSVDILWFTWRMKLLTGQRGVAILYAYMLLGLGFLRTV 921
Query: 660 TPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKA---------------MI 704
TP+FG+L S+EQQLEGTFRFMHERL HAESVAFFGGGAREKA M+
Sbjct: 922 TPDFGNLISQEQQLEGTFRFMHERLCTHAESVAFFGGGAREKAVSFCMSLFYYLNFLQMV 981
Query: 705 ESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGE 764
ESRFRELL HS LLKKKWLFGILDDF+TKQLPHNVTW LSLLYAMEHKGDRA +STQGE
Sbjct: 982 ESRFRELLSHSKYLLKKKWLFGILDDFITKQLPHNVTWLLSLLYAMEHKGDRASISTQGE 1041
Query: 765 LAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSS 824
LAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDA+Q G S +S
Sbjct: 1042 LAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDASQSGTSGDSINS 1101
Query: 825 QHKWNSTDY--QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRV 882
DY +D+ISF +DI+TP+QK+LAR+LT +I GKSLLVTGPNGSGKSS+FRV
Sbjct: 1102 SITSPIWDYHGKDAISFCMVDIVTPTQKMLARELTCDIEFGKSLLVTGPNGSGKSSIFRV 1161
Query: 883 LRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRA 942
LRGLWP+ SG L++PS+ +D EAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEA+ +A
Sbjct: 1162 LRGLWPIASGRLSRPSEDVDLEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAQFQA 1221
Query: 943 LKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLG 1002
LK+HGKGEK D +LD++L+ ILE VRL+YLLER+ GWDANLNWEDILSLGEQQRLG
Sbjct: 1222 LKMHGKGEKHPDLRIMLDTHLQVILENVRLNYLLERDNNGWDANLNWEDILSLGEQQRLG 1281
Query: 1003 MARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLI 1062
MARLFFHKPKFGILDECTNATSVDVEE LY LA MGIT VTSSQRPALIPFHS+EL LI
Sbjct: 1282 MARLFFHKPKFGILDECTNATSVDVEEHLYGLANKMGITVVTSSQRPALIPFHSMELHLI 1341
Query: 1063 DGEGNWELRTI 1073
DGEGNWELR+I
Sbjct: 1342 DGEGNWELRSI 1352
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224083701|ref|XP_002307090.1| peroxisomal membrane ABC transporter family, PMP family [Populus trichocarpa] gi|222856539|gb|EEE94086.1| peroxisomal membrane ABC transporter family, PMP family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1828 bits (4736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 888/1074 (82%), Positives = 963/1074 (89%), Gaps = 28/1074 (2%)
Query: 1 MMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH 60
++RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGEN+EE HIQQKFK L H
Sbjct: 261 LIRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENREEFHIQQKFKTLIGH 320
Query: 61 MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHT 120
MR VLHDHWWFGMIQDFLLKY GATVAVILIIEPFFAG L+PD STLGRA+MLSNLRYHT
Sbjct: 321 MRTVLHDHWWFGMIQDFLLKYFGATVAVILIIEPFFAGQLRPDASTLGRAEMLSNLRYHT 380
Query: 121 SVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSP-QRNGSRNYFSEA 179
SVIISLFQSLGTLSISSRRLNRLSGYADRIHEL+ +SRELS DKS QR+GSRNYFSEA
Sbjct: 381 SVIISLFQSLGTLSISSRRLNRLSGYADRIHELIAVSRELSNGDKSSLQRSGSRNYFSEA 440
Query: 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 239
NY+EF GVKVVTP+GNVLV++LTLKV+ GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI
Sbjct: 441 NYVEFFGVKVVTPSGNVLVQDLTLKVDSGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 500
Query: 240 AKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 299
KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT+DQE+EPLTH GMVELLKNVDLEY
Sbjct: 501 VKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTADQEIEPLTHSGMVELLKNVDLEY 560
Query: 300 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 359
LLDRYPPEKE+NWG+ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA+V+
Sbjct: 561 LLDRYPPEKEVNWGEELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAQVQ 620
Query: 360 AMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTKSGINMIKSSETDRQS 419
AMGTSCITISHRPALVAFHDVVLSLDGEG W V+ K S +T++G ++ ET+R++
Sbjct: 621 AMGTSCITISHRPALVAFHDVVLSLDGEGGWLVNYKGKDSPALTEAGGDLTGDFETERKN 680
Query: 420 DAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVFPQLKSAPRILPLRV 479
DAM V++AF T+ K + SY+SEVIAASP DHNV LP+ P L+ APR LPLRV
Sbjct: 681 DAMIVQKAFSTSDKAT-------HSYISEVIAASPNIDHNVLLPIVPPLQRAPRALPLRV 733
Query: 480 ADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIG 539
A MFK+LVPT+ DKQGA LLAVAFLV+SRT++SDRIASLNGTTVK+VLEQDKASFVRLIG
Sbjct: 734 AAMFKILVPTILDKQGAHLLAVAFLVISRTFVSDRIASLNGTTVKFVLEQDKASFVRLIG 793
Query: 540 VSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQ 599
VSVLQSAASSFIAPS+RHLT RLALGWRIR+TQHLLK+YLR N+FYKVF+MSSK+IDADQ
Sbjct: 794 VSVLQSAASSFIAPSLRHLTTRLALGWRIRLTQHLLKNYLRNNTFYKVFHMSSKNIDADQ 853
Query: 600 RITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSV 659
RITHDLEKLTTDLSGLVTGMVKP VDILWFTWRMK LTGQRGVAILY YMLLGLGFLR+V
Sbjct: 854 RITHDLEKLTTDLSGLVTGMVKPLVDILWFTWRMKLLTGQRGVAILYTYMLLGLGFLRAV 913
Query: 660 TPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLL 719
TP+FGDL S EQQLEGTFRFMHERLR HAESVAFFGGG REKAMIESRFRELL+HS+LLL
Sbjct: 914 TPDFGDLASEEQQLEGTFRFMHERLRTHAESVAFFGGGKREKAMIESRFRELLDHSMLLL 973
Query: 720 KKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQS 779
KKKW +GILDDFVTKQLPHNVTWGLSLLYAMEHKGDRA+ STQGELAHALRFLASVVSQS
Sbjct: 974 KKKWSYGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRAMTSTQGELAHALRFLASVVSQS 1033
Query: 780 FLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISF 839
FLAFGDILELH+KF ELSG INRIFELEELLDAAQ D+ISF
Sbjct: 1034 FLAFGDILELHKKFAELSGSINRIFELEELLDAAQ-------------------SDAISF 1074
Query: 840 SKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQ 899
++DIITP+QKLLARQLTF+I KSLL+TGPNGSGKSSVFRVLRGLWP+ SG + KPSQ
Sbjct: 1075 MEVDIITPAQKLLARQLTFDIEQRKSLLLTGPNGSGKSSVFRVLRGLWPIASGRIAKPSQ 1134
Query: 900 HIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNIL 959
HI +E GSGC +FYVPQRPYTCLGTLRDQIIYPLSR+EAE+ L+L+ KG+ + TN+L
Sbjct: 1135 HISKETGSGCAVFYVPQRPYTCLGTLRDQIIYPLSRDEAEVMTLELYEKGKLSTEITNML 1194
Query: 960 DSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDEC 1019
DS LK ILE VRL+YLLERE GWDAN+NWED LSLGEQQRLGMARLFFHKPKF ILDEC
Sbjct: 1195 DSCLKNILENVRLNYLLEREG-GWDANMNWEDTLSLGEQQRLGMARLFFHKPKFAILDEC 1253
Query: 1020 TNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 1073
TNATSVDVEEQLYRLA DMGITF+TSSQRPALIPFHSLELRLIDGEG+WELR I
Sbjct: 1254 TNATSVDVEEQLYRLASDMGITFITSSQRPALIPFHSLELRLIDGEGHWELRAI 1307
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255549548|ref|XP_002515826.1| peroxisomal abc transporter, putative [Ricinus communis] gi|223545055|gb|EEF46568.1| peroxisomal abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1825 bits (4728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 900/1074 (83%), Positives = 977/1074 (90%), Gaps = 1/1074 (0%)
Query: 1 MMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH 60
M+R FSPAFGKLMSKEQQLEGEYR+LHSRLRTHAESIAFYGGE +EE HIQ+KFK L +H
Sbjct: 264 MIRKFSPAFGKLMSKEQQLEGEYRRLHSRLRTHAESIAFYGGERREEFHIQEKFKNLVKH 323
Query: 61 MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHT 120
MRVVLH+HWWFGMIQDFL+KYLGATVAVILIIEPFFAG+L+PD STLGRA MLSNLRYHT
Sbjct: 324 MRVVLHEHWWFGMIQDFLVKYLGATVAVILIIEPFFAGHLRPDASTLGRATMLSNLRYHT 383
Query: 121 SVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDK-SPQRNGSRNYFSEA 179
SVIISLFQSLGTLS SSRRLNRLSGYADRIHEL+ ISREL+ +DK S QR+ SRNYFSE+
Sbjct: 384 SVIISLFQSLGTLSTSSRRLNRLSGYADRIHELIAISRELNNDDKTSLQRSRSRNYFSES 443
Query: 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 239
+Y+EFSGVKVVTPTGNVLVE+LTLKVE GSNLLITGPNGSGKSSLFRVLGGLWPLVSG+I
Sbjct: 444 DYVEFSGVKVVTPTGNVLVEDLTLKVESGSNLLITGPNGSGKSSLFRVLGGLWPLVSGYI 503
Query: 240 AKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 299
KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT DQEVEPLT GM+ELLKNVDLEY
Sbjct: 504 VKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTVDQEVEPLTRSGMLELLKNVDLEY 563
Query: 300 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 359
LLDRYPPE+E+NWG+ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR
Sbjct: 564 LLDRYPPEQEVNWGEELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 623
Query: 360 AMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTKSGINMIKSSETDRQS 419
AMGTSCITISHRPALVAFHDVVLSLDGEG W+V KR + +T++G N+++ S+TDRQS
Sbjct: 624 AMGTSCITISHRPALVAFHDVVLSLDGEGGWKVSYKRKDTPALTEAGTNVVRISDTDRQS 683
Query: 420 DAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVFPQLKSAPRILPLRV 479
DAM V++AF T DSAFS+ KAQSY+SEVIAASP AD LP PQL+ AP+ L LRV
Sbjct: 684 DAMVVQRAFATIDTDSAFSSSKAQSYISEVIAASPSADSRHQLPTVPQLQRAPKALALRV 743
Query: 480 ADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIG 539
A M K+LVPT+ D+QGAQLLAVAFLVVSRTW+SDRIASLNGTTVKYVLEQDK+SF+RLIG
Sbjct: 744 AAMSKILVPTLLDRQGAQLLAVAFLVVSRTWVSDRIASLNGTTVKYVLEQDKSSFIRLIG 803
Query: 540 VSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQ 599
+S+LQSAASSFIAPS+RHLTARLALGWRIR+T HLL++YLR N+FYKVF MSSK+IDADQ
Sbjct: 804 ISILQSAASSFIAPSLRHLTARLALGWRIRLTGHLLQNYLRNNAFYKVFYMSSKNIDADQ 863
Query: 600 RITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSV 659
RITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK LTGQRGVAILYAYMLLGLGFLR+V
Sbjct: 864 RITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKLLTGQRGVAILYAYMLLGLGFLRTV 923
Query: 660 TPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLL 719
TP+FGDL SR QQLEG FRFMHERLR HAESVAFFGGGAREK+MIE+RFRELL+HSLLLL
Sbjct: 924 TPDFGDLASRAQQLEGMFRFMHERLRTHAESVAFFGGGAREKSMIEARFRELLDHSLLLL 983
Query: 720 KKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQS 779
KKKWL+GILDDFVTKQLPHNVTWGLSLLYA+EHKGDRALVSTQGELAHALRFLASVVSQS
Sbjct: 984 KKKWLYGILDDFVTKQLPHNVTWGLSLLYAVEHKGDRALVSTQGELAHALRFLASVVSQS 1043
Query: 780 FLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISF 839
FLAFGDILELH+KF+ELSG INRIFEL+ELLDAAQ GD S K + +D+I F
Sbjct: 1044 FLAFGDILELHKKFLELSGSINRIFELDELLDAAQSGDWSTDKLSPRKESDLHVKDAICF 1103
Query: 840 SKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQ 899
++DIITP+QKLLAR+LT +IV GKSLLVTGPNGSGKSSVFRVLRGLWP+VSG LTKPSQ
Sbjct: 1104 EEVDIITPAQKLLARRLTCDIVQGKSLLVTGPNGSGKSSVFRVLRGLWPLVSGRLTKPSQ 1163
Query: 900 HIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNIL 959
HI +E GCGIFYVPQRPYTCLGTLRDQIIYPLS +EAE LKL G +K T + L
Sbjct: 1164 HIGKETEYGCGIFYVPQRPYTCLGTLRDQIIYPLSHDEAEHMTLKLSGVDKKSAHTRSFL 1223
Query: 960 DSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDEC 1019
D LKTILE VRL+YLLEREE GWDANLNWEDILSLGEQQRLGMARLFFHKP+FGILDEC
Sbjct: 1224 DERLKTILENVRLNYLLEREEGGWDANLNWEDILSLGEQQRLGMARLFFHKPEFGILDEC 1283
Query: 1020 TNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 1073
TNATSVDVEEQLYRLAKDM IT VTSSQRPALIPFHS+ELR IDGEGNWELRTI
Sbjct: 1284 TNATSVDVEEQLYRLAKDMDITVVTSSQRPALIPFHSVELRFIDGEGNWELRTI 1337
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528475|ref|XP_003532828.1| PREDICTED: ABC transporter D family member 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1812 bits (4693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 887/1078 (82%), Positives = 964/1078 (89%), Gaps = 8/1078 (0%)
Query: 2 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 61
+RNFSPAFGKLMS+EQ+LEG YRQLHSRLRTH+ESIAFYGGE +EE+HIQQKF+ L RH+
Sbjct: 265 IRNFSPAFGKLMSREQELEGGYRQLHSRLRTHSESIAFYGGEKREEAHIQQKFRTLVRHI 324
Query: 62 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTS 121
VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF+G+L+PD+STLGRA+MLSNLRYHTS
Sbjct: 325 NRVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFSGHLRPDSSTLGRAEMLSNLRYHTS 384
Query: 122 VIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIED--KSPQRNGSRNYFSEA 179
VIISLFQSLGTLSIS+RRLNRLSGYADRIHELM ISRELS+E+ S QR GSRN SEA
Sbjct: 385 VIISLFQSLGTLSISARRLNRLSGYADRIHELMAISRELSLENGKSSLQRQGSRNCISEA 444
Query: 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 239
NY+ F GVKVVTPTGNVLV +LTLKVE GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI
Sbjct: 445 NYVGFYGVKVVTPTGNVLVNDLTLKVESGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 504
Query: 240 AKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 299
KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT DQEVEPLT MVELLKNVDLEY
Sbjct: 505 VKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTVDQEVEPLTDSRMVELLKNVDLEY 564
Query: 300 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 359
LLDRYPPEKE+NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA V
Sbjct: 565 LLDRYPPEKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCANVL 624
Query: 360 AMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTKSGINMIKSSETDRQS 419
AMGTSCITISHRPALVAFHDVVLSLDGEG W VH +R+ SS T+ G +M+K+SET RQS
Sbjct: 625 AMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHHRREDSS--TELGNDMMKASETKRQS 682
Query: 420 DAMAVEQAFVTAKKDSAFSNPKAQSYVSEVI-AASPIADHNVPLPVFPQLKSAPRILPLR 478
DA AV++AF KKDSAF N KAQS +SEVI A+SP N+ PQL R LP+R
Sbjct: 683 DAKAVQRAFAMNKKDSAFLNSKAQSDISEVIIASSPSMKRNISPSAVPQLHGNTRALPMR 742
Query: 479 VADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLI 538
VA M KVLVPT+FDKQGA+LLAV FLVVSRTW+SDRIASLNGTTVK VLEQDKASF+RLI
Sbjct: 743 VAAMCKVLVPTIFDKQGARLLAVVFLVVSRTWVSDRIASLNGTTVKLVLEQDKASFIRLI 802
Query: 539 GVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDAD 598
G+SVLQSAASSFIAPSIRHLTARLALG R +TQHLLK+YLR N+FYKVF+M+SK+IDAD
Sbjct: 803 GLSVLQSAASSFIAPSIRHLTARLALGGRTHLTQHLLKNYLRNNAFYKVFHMASKNIDAD 862
Query: 599 QRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRS 658
QRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK LTG+RGVAILYAYMLLGLGFLR+
Sbjct: 863 QRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKMLTGRRGVAILYAYMLLGLGFLRT 922
Query: 659 VTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLL 718
VTP+FG+L S+EQQLEGTFRFMHERL HAESVAFFGGGAREKAM+ESRFRELL HS L
Sbjct: 923 VTPDFGNLISQEQQLEGTFRFMHERLCTHAESVAFFGGGAREKAMVESRFRELLTHSEYL 982
Query: 719 LKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQ 778
LKKKWLFGILDDF+TKQLPHNVTWGLSL+YAMEHKGDRA V+TQGELAHALRFLASVVSQ
Sbjct: 983 LKKKWLFGILDDFITKQLPHNVTWGLSLIYAMEHKGDRASVTTQGELAHALRFLASVVSQ 1042
Query: 779 SFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPG---DDEISGSSQHKWNSTDYQD 835
SFLAFGDILEL++KFVELSGGINRIFELEELLDAAQ G ++ S S+ D
Sbjct: 1043 SFLAFGDILELNKKFVELSGGINRIFELEELLDAAQSGICTENFTSVSAIPPMRDVHSSD 1102
Query: 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 895
ISFSK+DIITP+QK+L R+L +I G SLLVTGPNGSGKSS+FRVLRGLWP+ SG L+
Sbjct: 1103 VISFSKVDIITPAQKMLVRELICDIKRGGSLLVTGPNGSGKSSIFRVLRGLWPIASGRLS 1162
Query: 896 KPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDT 955
+PS+ +DEE GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAE++ALK++GKGEK DT
Sbjct: 1163 RPSEVVDEEDGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAEVKALKMYGKGEKHADT 1222
Query: 956 TNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGI 1015
N+LD+ LK ILE VRL+YLLERE WDANL WEDILSLGEQQRLGMARLFFH+PKFGI
Sbjct: 1223 RNLLDTRLKVILESVRLNYLLEREGSNWDANLKWEDILSLGEQQRLGMARLFFHEPKFGI 1282
Query: 1016 LDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 1073
LDECTNATSVDVEE LY LAKDMGIT VTSSQRPALIPFHS+ELRLIDGEGNW+LR I
Sbjct: 1283 LDECTNATSVDVEEHLYGLAKDMGITVVTSSQRPALIPFHSMELRLIDGEGNWKLRLI 1340
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463371|ref|XP_003601967.1| ABC transporter D family member [Medicago truncatula] gi|355491015|gb|AES72218.1| ABC transporter D family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1805 bits (4675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 882/1089 (80%), Positives = 975/1089 (89%), Gaps = 23/1089 (2%)
Query: 2 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 61
+RNFSP FGKLMS EQQLEG+YRQLHSRLRTH+ESIAFYGGE +EE+HIQ KFK L RHM
Sbjct: 265 IRNFSPPFGKLMSTEQQLEGDYRQLHSRLRTHSESIAFYGGERREEAHIQHKFKTLVRHM 324
Query: 62 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTS 121
R VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF+GNL+PD+STLGRA+MLSNLRYHTS
Sbjct: 325 RRVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFSGNLRPDSSTLGRAEMLSNLRYHTS 384
Query: 122 VIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDK--SPQRNGSRNYFSEA 179
VIISLFQSLGTLSI +RRLNRLSGYADRI+ELM +SRELS+ D+ S QR GSRN SEA
Sbjct: 385 VIISLFQSLGTLSIGARRLNRLSGYADRIYELMAVSRELSLVDEKSSLQRQGSRNCISEA 444
Query: 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 239
NYIEFS VKVVTPTGNVLV++L+L+VE GSNLLITGPNGSGKSSLFRVLGGLWPL+SGHI
Sbjct: 445 NYIEFSNVKVVTPTGNVLVDDLSLRVEQGSNLLITGPNGSGKSSLFRVLGGLWPLISGHI 504
Query: 240 AKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 299
KPG+GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS+QEVEPLT GMVELLKNVDLEY
Sbjct: 505 VKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSNQEVEPLTDHGMVELLKNVDLEY 564
Query: 300 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 359
LLDRY PEKE+NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR
Sbjct: 565 LLDRYLPEKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 624
Query: 360 AMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTKSGINMIKSSETDRQS 419
AMGTSCITISHRPALVAFHDVVLSLDGEG W VH +R+ SS T+ GI+ +K+SET RQ+
Sbjct: 625 AMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYRREDSS--TEMGIDTMKASETKRQT 682
Query: 420 DAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADH-NVPLPVFPQLKSAPRILPLR 478
DA AV++AF +KKDSAFS+ KA+SY+++VI +SP +H N+P V PQL RILPLR
Sbjct: 683 DAKAVQRAFAMSKKDSAFSSSKAESYIADVIYSSPSTNHTNLPSTV-PQLHGNTRILPLR 741
Query: 479 VADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLI 538
VA MFKVLVPTVFDKQGAQLLAVA LVVSRTW+SDRIASLNGTTVK+VLEQDKA+F+RLI
Sbjct: 742 VAAMFKVLVPTVFDKQGAQLLAVALLVVSRTWVSDRIASLNGTTVKFVLEQDKAAFIRLI 801
Query: 539 GVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDAD 598
G+SVLQSAASSFIAPSIRHLTARLALGWRIR+TQHLLK+YLR N FYKVF+M+SKS+DAD
Sbjct: 802 GISVLQSAASSFIAPSIRHLTARLALGWRIRLTQHLLKNYLRSNVFYKVFHMASKSVDAD 861
Query: 599 QRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRS 658
QRIT DLEKLTTDLSGLVTG+VKPSVDILWFTWRMK LTGQRGVAILYAYMLLGLGFLR+
Sbjct: 862 QRITQDLEKLTTDLSGLVTGLVKPSVDILWFTWRMKLLTGQRGVAILYAYMLLGLGFLRT 921
Query: 659 VTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLL 718
VTP+FGDL S+EQQLEG FRFMHERL HAESVAFFGGGAREKAM+ESRF +LL HS L
Sbjct: 922 VTPDFGDLISQEQQLEGIFRFMHERLCTHAESVAFFGGGAREKAMVESRFSDLLIHSQYL 981
Query: 719 LKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVST------------QGELA 766
LKKK LFGILDDF+TKQLPHNVTW LSLLYAMEHKGDRA++ST GELA
Sbjct: 982 LKKKCLFGILDDFITKQLPHNVTWLLSLLYAMEHKGDRAVISTLGRIVGLFSHYITGELA 1041
Query: 767 HALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQH 826
HALRFLASVVSQSFLAFGDILEL+RK VELSGG+NRIFELEELLDAA G+ G
Sbjct: 1042 HALRFLASVVSQSFLAFGDILELNRKLVELSGGVNRIFELEELLDAAHSGEFINGGPIS- 1100
Query: 827 KWNSTDY--QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLR 884
++TDY +D ISFSK++I+TPSQK+LAR+LT ++ G+SLLVTGPNGSGKSS+FRVLR
Sbjct: 1101 --SATDYHSKDVISFSKVNIVTPSQKMLARELTCDVELGRSLLVTGPNGSGKSSIFRVLR 1158
Query: 885 GLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALK 944
GLWP+ SG ++PS+ +D++ GSGC IFYVPQRPYTCLGTLRDQIIYPLSREEAELRALK
Sbjct: 1159 GLWPIASGRFSRPSEDLDQDVGSGCSIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALK 1218
Query: 945 LHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMA 1004
++GKGEK DT +LD +L+ ILE VRL+YLLER+ GWDANLNWED LSLGEQQRLGMA
Sbjct: 1219 MYGKGEKHPDTVKLLDKHLEVILENVRLNYLLERDTSGWDANLNWEDTLSLGEQQRLGMA 1278
Query: 1005 RLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDG 1064
RLFFHKPKFGILDECTNATSVDVEE LY LAK M ITF+TSSQRPALIP+HS+ELRLIDG
Sbjct: 1279 RLFFHKPKFGILDECTNATSVDVEEHLYGLAKKMEITFITSSQRPALIPYHSMELRLIDG 1338
Query: 1065 EGNWELRTI 1073
EGNW+LR+I
Sbjct: 1339 EGNWQLRSI 1347
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463369|ref|XP_003601966.1| ABC transporter D family member [Medicago truncatula] gi|355491014|gb|AES72217.1| ABC transporter D family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1797 bits (4654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 882/1096 (80%), Positives = 975/1096 (88%), Gaps = 30/1096 (2%)
Query: 2 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 61
+RNFSP FGKLMS EQQLEG+YRQLHSRLRTH+ESIAFYGGE +EE+HIQ KFK L RHM
Sbjct: 265 IRNFSPPFGKLMSTEQQLEGDYRQLHSRLRTHSESIAFYGGERREEAHIQHKFKTLVRHM 324
Query: 62 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTS 121
R VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF+GNL+PD+STLGRA+MLSNLRYHTS
Sbjct: 325 RRVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFSGNLRPDSSTLGRAEMLSNLRYHTS 384
Query: 122 VIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDK--SPQRNGSRNYFSEA 179
VIISLFQSLGTLSI +RRLNRLSGYADRI+ELM +SRELS+ D+ S QR GSRN SEA
Sbjct: 385 VIISLFQSLGTLSIGARRLNRLSGYADRIYELMAVSRELSLVDEKSSLQRQGSRNCISEA 444
Query: 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 239
NYIEFS VKVVTPTGNVLV++L+L+VE GSNLLITGPNGSGKSSLFRVLGGLWPL+SGHI
Sbjct: 445 NYIEFSNVKVVTPTGNVLVDDLSLRVEQGSNLLITGPNGSGKSSLFRVLGGLWPLISGHI 504
Query: 240 AKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 299
KPG+GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS+QEVEPLT GMVELLKNVDLEY
Sbjct: 505 VKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSNQEVEPLTDHGMVELLKNVDLEY 564
Query: 300 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 359
LLDRY PEKE+NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR
Sbjct: 565 LLDRYLPEKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 624
Query: 360 AMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTKSGINMIKSSETDRQS 419
AMGTSCITISHRPALVAFHDVVLSLDGEG W VH +R+ SS T+ GI+ +K+SET RQ+
Sbjct: 625 AMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYRREDSS--TEMGIDTMKASETKRQT 682
Query: 420 DAMAVEQAFVTAKK-------DSAFSNPKAQSYVSEVIAASPIADH-NVPLPVFPQLKSA 471
DA AV++AF +KK DSAFS+ KA+SY+++VI +SP +H N+P V PQL
Sbjct: 683 DAKAVQRAFAMSKKIFIPFLQDSAFSSSKAESYIADVIYSSPSTNHTNLPSTV-PQLHGN 741
Query: 472 PRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDK 531
RILPLRVA MFKVLVPTVFDKQGAQLLAVA LVVSRTW+SDRIASLNGTTVK+VLEQDK
Sbjct: 742 TRILPLRVAAMFKVLVPTVFDKQGAQLLAVALLVVSRTWVSDRIASLNGTTVKFVLEQDK 801
Query: 532 ASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMS 591
A+F+RLIG+SVLQSAASSFIAPSIRHLTARLALGWRIR+TQHLLK+YLR N FYKVF+M+
Sbjct: 802 AAFIRLIGISVLQSAASSFIAPSIRHLTARLALGWRIRLTQHLLKNYLRSNVFYKVFHMA 861
Query: 592 SKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLL 651
SKS+DADQRIT DLEKLTTDLSGLVTG+VKPSVDILWFTWRMK LTGQRGVAILYAYMLL
Sbjct: 862 SKSVDADQRITQDLEKLTTDLSGLVTGLVKPSVDILWFTWRMKLLTGQRGVAILYAYMLL 921
Query: 652 GLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFREL 711
GLGFLR+VTP+FGDL S+EQQLEG FRFMHERL HAESVAFFGGGAREKAM+ESRF +L
Sbjct: 922 GLGFLRTVTPDFGDLISQEQQLEGIFRFMHERLCTHAESVAFFGGGAREKAMVESRFSDL 981
Query: 712 LEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVST---------- 761
L HS LLKKK LFGILDDF+TKQLPHNVTW LSLLYAMEHKGDRA++ST
Sbjct: 982 LIHSQYLLKKKCLFGILDDFITKQLPHNVTWLLSLLYAMEHKGDRAVISTLGRIVGLFSH 1041
Query: 762 --QGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDE 819
GELAHALRFLASVVSQSFLAFGDILEL+RK VELSGG+NRIFELEELLDAA G+
Sbjct: 1042 YITGELAHALRFLASVVSQSFLAFGDILELNRKLVELSGGVNRIFELEELLDAAHSGEFI 1101
Query: 820 ISGSSQHKWNSTDY--QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKS 877
G ++TDY +D ISFSK++I+TPSQK+LAR+LT ++ G+SLLVTGPNGSGKS
Sbjct: 1102 NGGPIS---SATDYHSKDVISFSKVNIVTPSQKMLARELTCDVELGRSLLVTGPNGSGKS 1158
Query: 878 SVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREE 937
S+FRVLRGLWP+ SG ++PS+ +D++ GSGC IFYVPQRPYTCLGTLRDQIIYPLSREE
Sbjct: 1159 SIFRVLRGLWPIASGRFSRPSEDLDQDVGSGCSIFYVPQRPYTCLGTLRDQIIYPLSREE 1218
Query: 938 AELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGE 997
AELRALK++GKGEK DT +LD +L+ ILE VRL+YLLER+ GWDANLNWED LSLGE
Sbjct: 1219 AELRALKMYGKGEKHPDTVKLLDKHLEVILENVRLNYLLERDTSGWDANLNWEDTLSLGE 1278
Query: 998 QQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSL 1057
QQRLGMARLFFHKPKFGILDECTNATSVDVEE LY LAK M ITF+TSSQRPALIP+HS+
Sbjct: 1279 QQRLGMARLFFHKPKFGILDECTNATSVDVEEHLYGLAKKMEITFITSSQRPALIPYHSM 1338
Query: 1058 ELRLIDGEGNWELRTI 1073
ELRLIDGEGNW+LR+I
Sbjct: 1339 ELRLIDGEGNWQLRSI 1354
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512707|ref|XP_003525058.1| PREDICTED: ABC transporter D family member 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1795 bits (4650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 880/1075 (81%), Positives = 956/1075 (88%), Gaps = 25/1075 (2%)
Query: 2 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 61
+RNFSPAFGKLMS+EQ+LEGEYRQLHSRLRTH+ESIAFYGGE +EE+HIQQKF+ L RH+
Sbjct: 265 IRNFSPAFGKLMSREQELEGEYRQLHSRLRTHSESIAFYGGERREEAHIQQKFRTLVRHI 324
Query: 62 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTS 121
VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF+G+L+PD+STLGRA+MLSNLRYHTS
Sbjct: 325 NRVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFSGHLRPDSSTLGRAEMLSNLRYHTS 384
Query: 122 VIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIED--KSPQRNGSRNYFSEA 179
VIISLFQSLGTLSIS+RRLNRLSGYADRIHELM ISRELS+++ S QR GSRNY SEA
Sbjct: 385 VIISLFQSLGTLSISARRLNRLSGYADRIHELMAISRELSLDNGKSSLQRQGSRNYISEA 444
Query: 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 239
NY+ F GVKVVTPTGNVLV++LTLKV+ GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI
Sbjct: 445 NYVGFYGVKVVTPTGNVLVDDLTLKVQSGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 504
Query: 240 AKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 299
KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT+DQEVEPLT MVELLKNVDLEY
Sbjct: 505 VKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTADQEVEPLTDSRMVELLKNVDLEY 564
Query: 300 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 359
LLDRYP E E+NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA V
Sbjct: 565 LLDRYPSETEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCANVL 624
Query: 360 AMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTKSGINMIKSSETDRQS 419
AMGTSCITISHRPALVAFHDVVLSLDGEG W VH +R+ SS T+ G + +K+ ET RQS
Sbjct: 625 AMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHHRREDSS--TELGNDTVKALETKRQS 682
Query: 420 DAMAVEQAFVTAKKDSAFSNPKAQSYVSEVI-AASPIADHNVPLPVFPQLKSAPRILPLR 478
DA AV++AF N KAQS +SEVI A+SP N+ PQL R LP+R
Sbjct: 683 DAKAVQRAFAM--------NKKAQSDISEVIIASSPSMKRNISPSAVPQLHGNTRALPMR 734
Query: 479 VADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLI 538
VA M KVLVPT+FDKQGA+LLAVAFLVVSRTW+SDRIASLNGTTVK VLEQDKASF+RLI
Sbjct: 735 VAAMCKVLVPTIFDKQGARLLAVAFLVVSRTWVSDRIASLNGTTVKLVLEQDKASFIRLI 794
Query: 539 GVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDAD 598
G+SV+QSAASSFIAPSIRHLTARLALG RIR+TQHLLK+YLR N+FYKVF+M+SK++DAD
Sbjct: 795 GISVIQSAASSFIAPSIRHLTARLALGGRIRLTQHLLKNYLRNNAFYKVFHMASKNVDAD 854
Query: 599 QRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRS 658
QRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK LTG+RGVAILYAYMLLGLGFLR+
Sbjct: 855 QRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKLLTGRRGVAILYAYMLLGLGFLRT 914
Query: 659 VTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLL 718
VTP+FGDL S+EQQLEGTFRFMHERL HAESVAFFGGGAREKAM+ESRFRELL HS L
Sbjct: 915 VTPDFGDLISQEQQLEGTFRFMHERLCTHAESVAFFGGGAREKAMVESRFRELLLHSKYL 974
Query: 719 LKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQ 778
LKKKWLFGILDDF+TKQLPHNVTWGLSL+YAMEHKGDRA V+TQGELAHALRFLASVVSQ
Sbjct: 975 LKKKWLFGILDDFITKQLPHNVTWGLSLIYAMEHKGDRASVTTQGELAHALRFLASVVSQ 1034
Query: 779 SFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSIS 838
SFLAFGDILELHRKFVELSGGINRIFELEELLDAAQ D S D IS
Sbjct: 1035 SFLAFGDILELHRKFVELSGGINRIFELEELLDAAQSVRDVHS------------SDVIS 1082
Query: 839 FSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPS 898
FSK+DI+TPSQK+LAR+L F+I G SLLVTGPNGSGKSS+FRVLRGLWP+ SG L++PS
Sbjct: 1083 FSKVDIVTPSQKMLARELIFDIKHGGSLLVTGPNGSGKSSIFRVLRGLWPIASGRLSRPS 1142
Query: 899 QHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNI 958
+ +DEE GSGCGIFYVPQRPYTCLGTLRDQIIYPLS EEAE++ LK++GK EK DT N+
Sbjct: 1143 EVVDEEDGSGCGIFYVPQRPYTCLGTLRDQIIYPLSCEEAEVKVLKMYGKDEKHADTRNL 1202
Query: 959 LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1018
LD+ LK ILE VRL+YLLERE WDANL WEDILSLGEQQRLGMARLFFHKPKFGILDE
Sbjct: 1203 LDTRLKAILESVRLNYLLEREGSNWDANLKWEDILSLGEQQRLGMARLFFHKPKFGILDE 1262
Query: 1019 CTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 1073
CTNATSVDVEE LY LAKDMGIT VTSSQRPALIPFHS+ELRLIDGEGNW+LR I
Sbjct: 1263 CTNATSVDVEEHLYGLAKDMGITVVTSSQRPALIPFHSMELRLIDGEGNWKLRLI 1317
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18420546|ref|NP_568072.1| ABC transporter D family member 1 [Arabidopsis thaliana] gi|75332181|sp|Q94FB9.1|AB1D_ARATH RecName: Full=ABC transporter D family member 1; Short=ABC transporter ABCD.1; Short=AtABCD1; AltName: Full=Peroxisomal ABC transporter 1; Short=AtPXA1; AltName: Full=Protein ACETATE NON-UTILIZING 2; AltName: Full=Protein COMATOSE; AltName: Full=Protein PEROXISOME DEFECTIVE 3; Short=Ped3p gi|15320529|gb|AAK95343.1|AF378120_1 peroxisomal ABC transporter PXA1 [Arabidopsis thaliana] gi|20803766|emb|CAC85290.1| ABC transporter [Arabidopsis thaliana] gi|332661726|gb|AEE87126.1| ABC transporter D family member 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1790 bits (4637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/1073 (80%), Positives = 962/1073 (89%), Gaps = 8/1073 (0%)
Query: 2 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 61
+RNFSP+FGKLMSKEQQLEGEYRQLHSRLRTH+ESIAFYGGE +EESHIQQKFK L HM
Sbjct: 267 IRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSESIAFYGGETREESHIQQKFKNLVSHM 326
Query: 62 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTS 121
VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF+G+L+PD STLGRA+MLSN+RYHTS
Sbjct: 327 SHVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFSGHLRPDDSTLGRAEMLSNIRYHTS 386
Query: 122 VIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSP-QRNGSRNYFSEAN 180
VIISLFQ+LGTLSISSRRLNRLSGYADRIHELM +SRELS +DKS QRN SRNY SEAN
Sbjct: 387 VIISLFQALGTLSISSRRLNRLSGYADRIHELMAVSRELSGDDKSSFQRNRSRNYLSEAN 446
Query: 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
Y+EFS VKVVTPTGNVLVE+LTL+VE GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI
Sbjct: 447 YVEFSDVKVVTPTGNVLVEDLTLRVEQGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIV 506
Query: 241 KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL 300
KPGVGSDLNKEIFYVPQRPY AVGTLRDQLIYPLTS QE E LT GMVELLKNVDLEYL
Sbjct: 507 KPGVGSDLNKEIFYVPQRPYMAVGTLRDQLIYPLTSGQESELLTEIGMVELLKNVDLEYL 566
Query: 301 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 360
LDRY PEKE+NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF AKVRA
Sbjct: 567 LDRYQPEKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFAAKVRA 626
Query: 361 MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTKSGINMIKSSETDRQSD 420
MGTSCITISHRPALVAFHDVVLSLDGEG W VH KRD S+++T + I+ +KSS+TDRQ+D
Sbjct: 627 MGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYKRDDSALLTDAEIDSVKSSDTDRQND 686
Query: 421 AMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVFPQLKSAPRILPLRVA 480
AM V++AF A+K+SA +N KAQSY +++IA SP+ D +V LP FPQ +++ R LP RVA
Sbjct: 687 AMVVQRAFAAARKESA-TNSKAQSYQTQLIARSPVVDKSVVLPRFPQPQTSQRALPSRVA 745
Query: 481 DMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGV 540
M VL+PT+FDKQGAQLLAVA LVVSRT ISDRIASLNGTTVKYVLEQDKA+FVRLIG+
Sbjct: 746 AMLNVLIPTIFDKQGAQLLAVACLVVSRTLISDRIASLNGTTVKYVLEQDKAAFVRLIGL 805
Query: 541 SVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQR 600
SVLQS ASS IAPS+RHLT RLALGWRIR+TQHLL++YLR N+FYKVF+MS SIDADQR
Sbjct: 806 SVLQSGASSIIAPSLRHLTQRLALGWRIRLTQHLLRNYLRNNAFYKVFHMSGNSIDADQR 865
Query: 601 ITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVT 660
+T DLEKLT DLSGL+TGMVKPSVDILWFTWRMK LTGQRGVAILY YMLLGLGFLR V
Sbjct: 866 LTRDLEKLTADLSGLLTGMVKPSVDILWFTWRMKLLTGQRGVAILYTYMLLGLGFLRRVA 925
Query: 661 PEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLK 720
P+FGDL EQQLEG FRFMHERL HAES+AFFGGGAREKAM++ +FR LL+HSL+LL+
Sbjct: 926 PDFGDLAGEEQQLEGKFRFMHERLNTHAESIAFFGGGAREKAMVDKKFRALLDHSLMLLR 985
Query: 721 KKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSF 780
KKWL+GILDDFVTKQLP+NVTWGLSLLYA+EHKGDRALVSTQGELAHALR+LASVVSQSF
Sbjct: 986 KKWLYGILDDFVTKQLPNNVTWGLSLLYALEHKGDRALVSTQGELAHALRYLASVVSQSF 1045
Query: 781 LAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFS 840
+AFGDILELH+KF+ELSGGINRIFEL+E LDA+Q G +S+++ + D QD +SFS
Sbjct: 1046 MAFGDILELHKKFLELSGGINRIFELDEFLDASQSG-----VTSENQTSRLDSQDLLSFS 1100
Query: 841 KLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQH 900
++DIITP+QKL+A +L+ EIV GKSLLVTGPNGSGK+SVFRVLR +WP V G LTKPS
Sbjct: 1101 EVDIITPAQKLMASKLSCEIVSGKSLLVTGPNGSGKTSVFRVLRDIWPTVCGRLTKPSLD 1160
Query: 901 IDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILD 960
I +E GSG G+F+VPQRPYTCLGTLRDQIIYPLS+EEAE RA KL+ GE + +ILD
Sbjct: 1161 I-KELGSGNGMFFVPQRPYTCLGTLRDQIIYPLSKEEAEKRAAKLYTSGESSTEAGSILD 1219
Query: 961 SYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1020
S+LKTILE VRL YLLER+ GWDA NWEDILSLGEQQRLGMARLFFH+PKFG+LDECT
Sbjct: 1220 SHLKTILENVRLVYLLERDVGGWDATTNWEDILSLGEQQRLGMARLFFHRPKFGVLDECT 1279
Query: 1021 NATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 1073
NATSVDVEEQLYR+A+DMG+TF+TSSQRPALIPFHSLELRLIDGEGNWELR+I
Sbjct: 1280 NATSVDVEEQLYRVARDMGVTFITSSQRPALIPFHSLELRLIDGEGNWELRSI 1332
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18478510|dbj|BAB84550.1| peroxisomal ABC transporter [Arabidopsis thaliana] gi|18478515|dbj|BAB84551.1| peroxisomal ABC transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1790 bits (4637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/1073 (80%), Positives = 962/1073 (89%), Gaps = 8/1073 (0%)
Query: 2 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 61
+RNFSP+FGKLMSKEQQLEGEYRQLHSRLRTH+ESIAFYGGE +EESHIQQKFK L HM
Sbjct: 267 IRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSESIAFYGGETREESHIQQKFKNLVSHM 326
Query: 62 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTS 121
VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF+G+L+PD STLGRA+MLSN+RYHTS
Sbjct: 327 SHVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFSGHLRPDDSTLGRAEMLSNIRYHTS 386
Query: 122 VIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSP-QRNGSRNYFSEAN 180
VIISLFQ+LGTLSISSRRLNRLSGYADRIHELM +SRELS +DKS QRN SRNY SEAN
Sbjct: 387 VIISLFQALGTLSISSRRLNRLSGYADRIHELMAVSRELSGDDKSSFQRNRSRNYLSEAN 446
Query: 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
Y+EFS VKVVTPTGNVLVE+LTL+VE GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI
Sbjct: 447 YVEFSDVKVVTPTGNVLVEDLTLRVEQGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIV 506
Query: 241 KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL 300
KPGVGSDLNKEIFYVPQRPY AVGTLRDQLIYPLTS QE E LT GMVELLKNVDLEYL
Sbjct: 507 KPGVGSDLNKEIFYVPQRPYMAVGTLRDQLIYPLTSGQESELLTEIGMVELLKNVDLEYL 566
Query: 301 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 360
LDRY PEKE+NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF AKVRA
Sbjct: 567 LDRYQPEKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFAAKVRA 626
Query: 361 MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTKSGINMIKSSETDRQSD 420
MGTSCITISHRPALVAFHDVVLSLDGEG W VH KRD S+++T + I+ +KSS+TDRQ+D
Sbjct: 627 MGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYKRDDSALLTDAEIDSVKSSDTDRQND 686
Query: 421 AMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVFPQLKSAPRILPLRVA 480
AM V++AF A+K+SA +N KAQSY +++IA SP+ D +V LP FPQ +++ R LP RVA
Sbjct: 687 AMVVQRAFAAARKESA-TNSKAQSYQTQLIARSPVVDKSVVLPRFPQPQTSQRALPSRVA 745
Query: 481 DMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGV 540
M VL+PT+FDKQGAQLLAVA LVVSRT ISDRIASLNGTTVKYVLEQDKA+FVRLIG+
Sbjct: 746 AMLNVLIPTIFDKQGAQLLAVACLVVSRTLISDRIASLNGTTVKYVLEQDKAAFVRLIGL 805
Query: 541 SVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQR 600
SVLQS ASS IAPS+RHLT RLALGWRIR+TQHLL++YLR N+FYKVF+MS SIDADQR
Sbjct: 806 SVLQSGASSIIAPSLRHLTQRLALGWRIRLTQHLLRNYLRNNAFYKVFHMSGNSIDADQR 865
Query: 601 ITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVT 660
+T DLEKLT DLSGL+TGMVKPSVDILWFTWRMK LTGQRGVAILY YMLLGLGFLR V
Sbjct: 866 LTRDLEKLTADLSGLLTGMVKPSVDILWFTWRMKLLTGQRGVAILYTYMLLGLGFLRRVA 925
Query: 661 PEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLK 720
P+FGDL EQQLEG FRFMHERL HAES+AFFGGGAREKAM++ +FR LL+HSL+LL+
Sbjct: 926 PDFGDLAGEEQQLEGKFRFMHERLNTHAESIAFFGGGAREKAMVDKKFRALLDHSLMLLR 985
Query: 721 KKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSF 780
KKWL+GILDDFVTKQLP+NVTWGLSLLYA+EHKGDRALVSTQGELAHALR+LASVVSQSF
Sbjct: 986 KKWLYGILDDFVTKQLPNNVTWGLSLLYALEHKGDRALVSTQGELAHALRYLASVVSQSF 1045
Query: 781 LAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFS 840
+AFGDILELH+KF+ELSGGINRIFEL+E LDA+Q G +S+++ + D QD +SFS
Sbjct: 1046 MAFGDILELHKKFLELSGGINRIFELDEFLDASQSG-----VTSENQTSRLDSQDLLSFS 1100
Query: 841 KLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQH 900
++DIITP+QKL+A +L+ EIV GKSLLVTGPNGSGK+SVFRVLR +WP V G LTKPS
Sbjct: 1101 EVDIITPAQKLMASKLSCEIVSGKSLLVTGPNGSGKTSVFRVLRDIWPTVCGRLTKPSLD 1160
Query: 901 IDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILD 960
I +E GSG G+F+VPQRPYTCLGTLRDQIIYPLS+EEAE RA KL+ GE + +ILD
Sbjct: 1161 I-KELGSGNGMFFVPQRPYTCLGTLRDQIIYPLSKEEAEKRAAKLYTSGESSTEAGSILD 1219
Query: 961 SYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1020
S+LKTILE VRL YLLER+ GWDA NWEDILSLGEQQRLGMARLFFH+PKFG+LDECT
Sbjct: 1220 SHLKTILENVRLVYLLERDVGGWDATTNWEDILSLGEQQRLGMARLFFHRPKFGVLDECT 1279
Query: 1021 NATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 1073
NATSVDVEEQLYR+A+DMG+TF+TSSQRPALIPFHSLELRLIDGEGNWELR+I
Sbjct: 1280 NATSVDVEEQLYRVARDMGVTFITSSQRPALIPFHSLELRLIDGEGNWELRSI 1332
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1075 | ||||||
| UNIPROTKB|A7Z038 | 656 | ABCD3 "Uncharacterized protein | 0.534 | 0.876 | 0.343 | 5e-83 | |
| MGI|MGI:1349216 | 659 | Abcd3 "ATP-binding cassette, s | 0.530 | 0.864 | 0.336 | 2.5e-81 | |
| RGD|2007 | 659 | Abcd3 "ATP-binding cassette, s | 0.530 | 0.864 | 0.339 | 3.2e-81 | |
| UNIPROTKB|E7EUE1 | 683 | ABCD3 "ATP-binding cassette su | 0.530 | 0.834 | 0.339 | 8.5e-81 | |
| UNIPROTKB|P28288 | 659 | ABCD3 "ATP-binding cassette su | 0.530 | 0.864 | 0.339 | 8.5e-81 | |
| UNIPROTKB|F1P843 | 646 | ABCD3 "Uncharacterized protein | 0.534 | 0.890 | 0.337 | 3.7e-80 | |
| UNIPROTKB|J9P7K3 | 695 | ABCD3 "Uncharacterized protein | 0.534 | 0.827 | 0.337 | 3.7e-80 | |
| ZFIN|ZDB-GENE-050517-29 | 659 | abcd3b "ATP-binding cassette, | 0.525 | 0.857 | 0.335 | 4.6e-80 | |
| UNIPROTKB|F5GYC1 | 586 | ABCD3 "ATP-binding cassette su | 0.522 | 0.959 | 0.340 | 2.6e-79 | |
| UNIPROTKB|I3LI20 | 656 | ABCD3 "Uncharacterized protein | 0.534 | 0.876 | 0.326 | 2.6e-79 |
| UNIPROTKB|A7Z038 ABCD3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
Identities = 211/615 (34%), Positives = 330/615 (53%)
Query: 473 RILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKY-VLEQDK 531
R+ R+ + K++VP F K+ L+ +A ++VSRT+ D NGT ++ ++ + +
Sbjct: 61 RVFFSRLMRILKIMVPKTFCKETGYLILIAVMLVSRTFC-DVWMIQNGTLIESGIIGRSR 119
Query: 532 ASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMS 591
F + + + S + ++ L L +R+R+T++L + YL+ ++YK+ N+
Sbjct: 120 KDFKKYLFNFIAAMPLISLVNNFLKFGLNELKLCFRVRLTKYLYEEYLQAFTYYKMGNLD 179
Query: 592 SKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLL 651
++ + DQ +T D+EK + L + + KP +DI+ + +R+ + G +G A + AY+L+
Sbjct: 180 NRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFRLTSAIGAQGPASMMAYLLV 239
Query: 652 GLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFREX 711
FL + G +T EQ+LEG +R+++ RL ++E VAF+ G REK I S F++
Sbjct: 240 SGLFLTRIRRPIGKMTITEQKLEGEYRYVNSRLITNSEEVAFYNGNKREKQTIHSVFQKL 299
Query: 712 XXXXXXXXXXXXXXXXXDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRF 771
D + K L V + + ++ R L S+ EL
Sbjct: 300 VEHLHNFILFRFSMGFIDSIIAKYLATVVGYLVVSRPFLDLAHPRHLKSSHSELLEDYYQ 359
Query: 772 LASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNST 831
++ + A G I+ R+ L+G RI EL ++L G E + SQ + +
Sbjct: 360 SGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNQGKYERTMVSQQEKGAQ 419
Query: 832 DYQ-----------DSI-SFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSV 879
D D+I F + + TP+ +L R L FE+ G ++L+ GPNG GKSS+
Sbjct: 420 DIPLIPGIGEIINTDNIIKFDHVPLATPNGDILIRDLNFEVRSGANVLICGPNGCGKSSL 479
Query: 880 FRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAE 939
FRVL LWP+ G LTKP E G +FYVPQRPY LGTLRDQ+IYP +E+ +
Sbjct: 480 FRVLGELWPLFGGRLTKP------ERGK---LFYVPQRPYMTLGTLRDQVIYPDGKEDQK 530
Query: 940 LRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQ 999
KG I D LK L+ V+LS++LERE GWD+ +W D+LS GE+Q
Sbjct: 531 K-------KG--------ISDLVLKEYLDNVQLSHILEREG-GWDSVQDWMDVLSGGEKQ 574
Query: 1000 RLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLEL 1059
R+ MARLF+HKP+F ILDECT+A SVDVE+ +Y +++GIT T S R +L H L
Sbjct: 575 RMAMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCREVGITLFTVSHRKSLWKHHEYYL 634
Query: 1060 RLIDGEGNWELRTIS 1074
+ DG GN+E + I+
Sbjct: 635 HM-DGRGNYEFKQIT 648
|
|
| MGI|MGI:1349216 Abcd3 "ATP-binding cassette, sub-family D (ALD), member 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
Identities = 206/613 (33%), Positives = 324/613 (52%)
Query: 478 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKY-VLEQDKASFVR 536
R++ + K++VP F K+ LL +A ++VSRT+ D NGT ++ ++ + F R
Sbjct: 66 RLSQILKIMVPRTFCKETGYLLLIAVMLVSRTYC-DVWMIQNGTLIESGIIGRSSKDFKR 124
Query: 537 LIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSID 596
+ + S + +++ L L +R+R+T++L + YL+ ++YK+ N+ ++ +
Sbjct: 125 YLFNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTRYLYEEYLQAFTYYKMGNLDNRIAN 184
Query: 597 ADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFL 656
DQ +T D+EK + L + + KP +DI+ + +++ + G +G A + AY+L+ FL
Sbjct: 185 PDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMMAYLLVSGLFL 244
Query: 657 RSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFREXXXXXX 716
+ G +T EQ+ EG +R+++ RL ++E +AF+ G REK I S FR+
Sbjct: 245 TRLRRPIGKMTIMEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTIHSVFRKLVEHLH 304
Query: 717 XXXXXXXXXXXXDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVV 776
D + K + V + + ++ R L ST EL ++
Sbjct: 305 NFIFFRFSMGFIDSIIAKYVATVVGYLVVSRPFLDLAHPRHLHSTHSELLEDYYQSGRML 364
Query: 777 SQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDS 836
+ A G I+ R+ L+G RI EL ++L G E + SQ + Q S
Sbjct: 365 LRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGRYERTMVSQQEKGIEGAQAS 424
Query: 837 ---------------ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFR 881
I F + + TP+ +L + L+FE+ G ++L+ GPNG GKSS+FR
Sbjct: 425 PLVPGAGEIINTDNIIKFDHVPLATPNGDILIQDLSFEVRSGANVLICGPNGCGKSSLFR 484
Query: 882 VLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELR 941
VL LWP+ G LTKP E G +FYVPQRPY LGTLRDQ+IYP +E+ + R
Sbjct: 485 VLGELWPLFGGRLTKP------ERGK---LFYVPQRPYMTLGTLRDQVIYPDGKEDQKKR 535
Query: 942 ALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRL 1001
+ D LK L+ V+L ++LERE GWD+ +W D+LS GE+QR+
Sbjct: 536 GIS---------------DQVLKEYLDNVQLGHILEREG-GWDSVQDWMDVLSGGEKQRM 579
Query: 1002 GMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRL 1061
MARLF+HKP+F ILDECT+A SVDVE+ +Y + +GIT T S R +L H L +
Sbjct: 580 AMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHM 639
Query: 1062 IDGEGNWELRTIS 1074
DG GN+E + I+
Sbjct: 640 -DGRGNYEFKKIT 651
|
|
| RGD|2007 Abcd3 "ATP-binding cassette, subfamily D (ALD), member 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
Identities = 208/613 (33%), Positives = 324/613 (52%)
Query: 478 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKY-VLEQDKASFVR 536
R++ + K++VP F K+ L+ +A ++VSRT+ D NGT ++ ++ + F R
Sbjct: 66 RLSQILKIMVPRTFCKETGYLILIAVMLVSRTYC-DVWMIQNGTLIESGIIGRSSKDFKR 124
Query: 537 LIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSID 596
+ + S + +++ L L +R+R+T++L + YL+ ++YK+ N+ ++ +
Sbjct: 125 YLFNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTRYLYEEYLQAFTYYKMGNLDNRIAN 184
Query: 597 ADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFL 656
DQ +T D+EK + L + + KP +DI+ + +++ + G +G A + AY+L+ FL
Sbjct: 185 PDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMMAYLLVSGLFL 244
Query: 657 RSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFREXXXXXX 716
+ G +T EQ+ EG +RF++ RL ++E +AF+ G REK I S FR+
Sbjct: 245 TRLRRPIGKMTIMEQKYEGEYRFVNSRLITNSEEIAFYNGNKREKQTIHSVFRKLVEHLH 304
Query: 717 XXXXXXXXXXXXDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVV 776
D + K + V + + ++ R L ST EL ++
Sbjct: 305 NFIFFRFSMGFIDSIIAKYIATVVGYLVVSRPFLDLAHPRHLHSTHSELLEDYYQSGRML 364
Query: 777 SQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDS 836
+ A G I+ R+ L+G RI EL ++L G E + SQ Q S
Sbjct: 365 LRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGKYERTMVSQQDKGIEGAQAS 424
Query: 837 ---------------ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFR 881
I F + + TP+ +L + L+FE+ G ++L+ GPNG GKSS+FR
Sbjct: 425 PLIPGAGEIINADNIIKFDHVPLATPNGDILIQDLSFEVRSGANVLICGPNGCGKSSLFR 484
Query: 882 VLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELR 941
VL LWP+ G LTKP E G +FYVPQRPY LGTLRDQ+IYP +E+ +
Sbjct: 485 VLGELWPLFGGHLTKP------ERGK---LFYVPQRPYMTLGTLRDQVIYPDGKEDQKK- 534
Query: 942 ALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRL 1001
KG I D LK L+ V+L ++LERE GWD+ +W D+LS GE+QR+
Sbjct: 535 ------KG--------ISDQVLKGYLDNVQLGHILEREG-GWDSVQDWMDVLSGGEKQRM 579
Query: 1002 GMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRL 1061
MARLF+HKP+F ILDECT+A SVDVE+ +Y + +GIT T S R +L H L +
Sbjct: 580 AMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHM 639
Query: 1062 IDGEGNWELRTIS 1074
DG GN+E + I+
Sbjct: 640 -DGRGNYEFKKIT 651
|
|
| UNIPROTKB|E7EUE1 ABCD3 "ATP-binding cassette sub-family D member 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
Identities = 208/613 (33%), Positives = 324/613 (52%)
Query: 478 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKY-VLEQDKASFVR 536
R+ + K++VP F K+ L+ +A ++VSRT+ D NGT ++ ++ + + F R
Sbjct: 90 RLIQILKIMVPRTFCKETGYLVLIAVMLVSRTYC-DVWMIQNGTLIESGIIGRSRKDFKR 148
Query: 537 LIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSID 596
+ + S + +++ L L +R+R+T++L + YL+ ++YK+ N+ ++ +
Sbjct: 149 YLLNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTKYLYEEYLQAFTYYKMGNLDNRIAN 208
Query: 597 ADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFL 656
DQ +T D+EK + L + + KP +DI+ + +++ + G +G A + AY+++ FL
Sbjct: 209 PDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMMAYLVVSGLFL 268
Query: 657 RSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFREXXXXXX 716
+ G +T EQ+ EG +R+++ RL ++E +AF+ G REK + S FR+
Sbjct: 269 TRLRRPIGKMTITEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTVHSVFRKLVEHLH 328
Query: 717 XXXXXXXXXXXXDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVV 776
D + K L V + + ++ R L ST EL ++
Sbjct: 329 NFILFRFSMGFIDSIIAKYLATVVGYLVVSRPFLDLSHPRHLKSTHSELLEDYYQSGRML 388
Query: 777 SQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQ-- 834
+ A G I+ R+ L+G RI EL ++L G E + SQ + Q
Sbjct: 389 LRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGKYERTMVSQQEKGIEGVQVI 448
Query: 835 ------------DSI-SFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFR 881
D+I F + + TP+ +L R L FE+ G ++L+ GPNG GKSS+FR
Sbjct: 449 PLIPGAGEIIIADNIIKFDHVPLATPNGDVLIRDLNFEVRSGANVLICGPNGCGKSSLFR 508
Query: 882 VLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELR 941
VL LWP+ G LTKP E G +FYVPQRPY LGTLRDQ+IYP RE+ +
Sbjct: 509 VLGELWPLFGGRLTKP------ERGK---LFYVPQRPYMTLGTLRDQVIYPDGREDQKR- 558
Query: 942 ALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRL 1001
KG I D LK L+ V+L ++LERE GWD+ +W D+LS GE+QR+
Sbjct: 559 ------KG--------ISDLVLKEYLDNVQLGHILEREG-GWDSVQDWMDVLSGGEKQRM 603
Query: 1002 GMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRL 1061
MARLF+HKP+F ILDECT+A SVDVE +Y + +GIT T S R +L H L +
Sbjct: 604 AMARLFYHKPQFAILDECTSAVSVDVEGYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHM 663
Query: 1062 IDGEGNWELRTIS 1074
DG GN+E + I+
Sbjct: 664 -DGRGNYEFKQIT 675
|
|
| UNIPROTKB|P28288 ABCD3 "ATP-binding cassette sub-family D member 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
Identities = 208/613 (33%), Positives = 324/613 (52%)
Query: 478 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKY-VLEQDKASFVR 536
R+ + K++VP F K+ L+ +A ++VSRT+ D NGT ++ ++ + + F R
Sbjct: 66 RLIQILKIMVPRTFCKETGYLVLIAVMLVSRTYC-DVWMIQNGTLIESGIIGRSRKDFKR 124
Query: 537 LIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSID 596
+ + S + +++ L L +R+R+T++L + YL+ ++YK+ N+ ++ +
Sbjct: 125 YLLNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTKYLYEEYLQAFTYYKMGNLDNRIAN 184
Query: 597 ADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFL 656
DQ +T D+EK + L + + KP +DI+ + +++ + G +G A + AY+++ FL
Sbjct: 185 PDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMMAYLVVSGLFL 244
Query: 657 RSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFREXXXXXX 716
+ G +T EQ+ EG +R+++ RL ++E +AF+ G REK + S FR+
Sbjct: 245 TRLRRPIGKMTITEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTVHSVFRKLVEHLH 304
Query: 717 XXXXXXXXXXXXDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVV 776
D + K L V + + ++ R L ST EL ++
Sbjct: 305 NFILFRFSMGFIDSIIAKYLATVVGYLVVSRPFLDLSHPRHLKSTHSELLEDYYQSGRML 364
Query: 777 SQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQ-- 834
+ A G I+ R+ L+G RI EL ++L G E + SQ + Q
Sbjct: 365 LRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGKYERTMVSQQEKGIEGVQVI 424
Query: 835 ------------DSI-SFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFR 881
D+I F + + TP+ +L R L FE+ G ++L+ GPNG GKSS+FR
Sbjct: 425 PLIPGAGEIIIADNIIKFDHVPLATPNGDVLIRDLNFEVRSGANVLICGPNGCGKSSLFR 484
Query: 882 VLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELR 941
VL LWP+ G LTKP E G +FYVPQRPY LGTLRDQ+IYP RE+ +
Sbjct: 485 VLGELWPLFGGRLTKP------ERGK---LFYVPQRPYMTLGTLRDQVIYPDGREDQKR- 534
Query: 942 ALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRL 1001
KG I D LK L+ V+L ++LERE GWD+ +W D+LS GE+QR+
Sbjct: 535 ------KG--------ISDLVLKEYLDNVQLGHILEREG-GWDSVQDWMDVLSGGEKQRM 579
Query: 1002 GMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRL 1061
MARLF+HKP+F ILDECT+A SVDVE +Y + +GIT T S R +L H L +
Sbjct: 580 AMARLFYHKPQFAILDECTSAVSVDVEGYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHM 639
Query: 1062 IDGEGNWELRTIS 1074
DG GN+E + I+
Sbjct: 640 -DGRGNYEFKQIT 651
|
|
| UNIPROTKB|F1P843 ABCD3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
Identities = 209/619 (33%), Positives = 325/619 (52%)
Query: 473 RILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKY-VLEQDK 531
++ LR+ + K++VP F K+ L+ +A ++VSRT+ D NGT ++ ++ + +
Sbjct: 47 KVFFLRLTRILKIMVPRTFCKETGYLVLIAVMLVSRTYC-DVWMIQNGTLIESGIIGRSR 105
Query: 532 ASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMS 591
F R + + S + ++ L L +R+R+T++L + YL+ ++YK+ N+
Sbjct: 106 KDFKRYLFNFIAAMPLISVVNNFLKFGLNELKLCFRVRLTKYLYEEYLQAFTYYKMGNLD 165
Query: 592 SKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLL 651
++ + DQ +T D+EK + L + + KP +DI+ + +++ + G +G + AY+++
Sbjct: 166 NRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPTSMMAYLIV 225
Query: 652 GLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFREX 711
FL + G +T EQ+ EG +RF++ RL ++E +AF+ G REK I S FR+
Sbjct: 226 SGLFLTRLRRPIGKMTITEQKYEGEYRFVNSRLITNSEEIAFYNGNKREKQTIHSVFRKL 285
Query: 712 XXXXXXXXXXXXXXXXXDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRF 771
D V K L V + + ++ R L ST EL
Sbjct: 286 VEHLHNFILFRFSMGFIDSIVAKYLATVVGYLVVSRPFLDLSHPRHLKSTHSELLEDYYQ 345
Query: 772 LASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNST 831
++ + A G I+ R+ L+G RI EL ++L G E + SQ +
Sbjct: 346 SGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNQGKYERTMVSQQERGIE 405
Query: 832 D---------------YQDSI-SFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSG 875
+ D+I F + + TP+ +L R L FE+ G ++L+ GPNG G
Sbjct: 406 EGAHFIPLIPGAGEIINADNIIKFDHVPLATPNGDILIRDLNFEVRSGANVLICGPNGCG 465
Query: 876 KSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSR 935
KSS+FRVL LWP+ G LTKP E G +FYVPQRPY LGTLRDQ+IYP R
Sbjct: 466 KSSLFRVLGELWPLFGGRLTKP------ERGK---LFYVPQRPYMTLGTLRDQVIYPDGR 516
Query: 936 EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 995
E+ + KG I D LK L+ V+L ++LERE GWD+ +W D+LS
Sbjct: 517 EDQKR-------KG--------ISDLVLKEYLDNVQLGHILEREG-GWDSVQDWMDVLSG 560
Query: 996 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFH 1055
GE+QR+ MARLF+HKP+F ILDECT+A SVDVE +Y + +GIT T S R +L H
Sbjct: 561 GEKQRMAMARLFYHKPQFAILDECTSAVSVDVEGYIYSHCRKVGITLFTVSHRKSLWKHH 620
Query: 1056 SLELRLIDGEGNWELRTIS 1074
L + DG G++E + I+
Sbjct: 621 EYYLHM-DGRGSYEFKQIT 638
|
|
| UNIPROTKB|J9P7K3 ABCD3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
Identities = 209/619 (33%), Positives = 325/619 (52%)
Query: 473 RILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKY-VLEQDK 531
++ LR+ + K++VP F K+ L+ +A ++VSRT+ D NGT ++ ++ + +
Sbjct: 96 KVFFLRLTRILKIMVPRTFCKETGYLVLIAVMLVSRTYC-DVWMIQNGTLIESGIIGRSR 154
Query: 532 ASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMS 591
F R + + S + ++ L L +R+R+T++L + YL+ ++YK+ N+
Sbjct: 155 KDFKRYLFNFIAAMPLISVVNNFLKFGLNELKLCFRVRLTKYLYEEYLQAFTYYKMGNLD 214
Query: 592 SKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLL 651
++ + DQ +T D+EK + L + + KP +DI+ + +++ + G +G + AY+++
Sbjct: 215 NRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPTSMMAYLIV 274
Query: 652 GLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFREX 711
FL + G +T EQ+ EG +RF++ RL ++E +AF+ G REK I S FR+
Sbjct: 275 SGLFLTRLRRPIGKMTITEQKYEGEYRFVNSRLITNSEEIAFYNGNKREKQTIHSVFRKL 334
Query: 712 XXXXXXXXXXXXXXXXXDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRF 771
D V K L V + + ++ R L ST EL
Sbjct: 335 VEHLHNFILFRFSMGFIDSIVAKYLATVVGYLVVSRPFLDLSHPRHLKSTHSELLEDYYQ 394
Query: 772 LASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNST 831
++ + A G I+ R+ L+G RI EL ++L G E + SQ +
Sbjct: 395 SGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNQGKYERTMVSQQERGIE 454
Query: 832 D---------------YQDSI-SFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSG 875
+ D+I F + + TP+ +L R L FE+ G ++L+ GPNG G
Sbjct: 455 EGAHFIPLIPGAGEIINADNIIKFDHVPLATPNGDILIRDLNFEVRSGANVLICGPNGCG 514
Query: 876 KSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSR 935
KSS+FRVL LWP+ G LTKP E G +FYVPQRPY LGTLRDQ+IYP R
Sbjct: 515 KSSLFRVLGELWPLFGGRLTKP------ERGK---LFYVPQRPYMTLGTLRDQVIYPDGR 565
Query: 936 EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 995
E+ + KG I D LK L+ V+L ++LERE GWD+ +W D+LS
Sbjct: 566 EDQKR-------KG--------ISDLVLKEYLDNVQLGHILEREG-GWDSVQDWMDVLSG 609
Query: 996 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFH 1055
GE+QR+ MARLF+HKP+F ILDECT+A SVDVE +Y + +GIT T S R +L H
Sbjct: 610 GEKQRMAMARLFYHKPQFAILDECTSAVSVDVEGYIYSHCRKVGITLFTVSHRKSLWKHH 669
Query: 1056 SLELRLIDGEGNWELRTIS 1074
L + DG G++E + I+
Sbjct: 670 EYYLHM-DGRGSYEFKQIT 687
|
|
| ZFIN|ZDB-GENE-050517-29 abcd3b "ATP-binding cassette, sub-family D (ALD), member 3b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 780 (279.6 bits), Expect = 4.6e-80, Sum P(2) = 4.6e-80
Identities = 207/617 (33%), Positives = 322/617 (52%)
Query: 478 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKY-VLEQDKASFVR 536
R+ + K+L+P F K+ LL +A ++V+RT+ D NGT ++ ++ + +F R
Sbjct: 67 RICHILKILMPQAFCKESGYLLLIAVMLVARTYC-DVWMIHNGTMIESAIIGRSTTTFKR 125
Query: 537 -LIG-VSVLQ--SAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSS 592
L+ ++V+ S ++F+ I L L +R+R+T HL YL+ ++Y++ N+ +
Sbjct: 126 YLVNFITVMPFISLVNNFLKLGINELK----LCFRVRLTNHLYNDYLKGFTYYQIGNLDN 181
Query: 593 KSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLL- 651
+ + DQ IT D+EK + L + + KP +DIL + +++ G G A L Y+LL
Sbjct: 182 RIANPDQLITQDVEKFCNSVVDLYSNVSKPLLDILIYIFKLNTAIGSLGPATLLGYLLLS 241
Query: 652 GLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFREX 711
GL R P G +T EQ+ EG +R+++ RL ++E +AF+ G REK I F++
Sbjct: 242 GLLLTRLRRP-IGKMTVTEQRYEGEYRYVNSRLITNSEEIAFYNGNLREKQTIIGTFQKL 300
Query: 712 XXXXXXXXXXXXXXXXXDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRF 771
D + K + V + + ++ R + ST E
Sbjct: 301 VDHLSRFIHFRFSMGVMDSIIAKYIAMAVGYLVISRPFLDISNQRHINSTYAERLEDYYQ 360
Query: 772 LASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQH-KWNS 830
++ A G I+ R+ LSG RI E++E+L G E + + K +
Sbjct: 361 SGRMLMSLAQALGRIVLAGREMTRLSGFTARITEIQEVLKELNSGKYERTMVTHRIKDTA 420
Query: 831 TDY-------------QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKS 877
D + I F + + TP+ +L L+FE+ G ++LV GPNG GKS
Sbjct: 421 VDKIPLIPGRGEIIIADNKIKFEHIPLATPNGDILISDLSFEVSSGTNVLVCGPNGCGKS 480
Query: 878 SVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREE 937
S+FRVL LWP+ G LTKP E G +FYVPQRPY LG+LRDQ+IYP + E+
Sbjct: 481 SLFRVLGELWPLCGGKLTKP------ERGK---LFYVPQRPYMTLGSLRDQVIYPDTLED 531
Query: 938 AELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGE 997
++ T+ D LK L+ V+L ++LERE W++ +W D+LS GE
Sbjct: 532 -------------QMKKRTS--DRVLKEYLDNVQLGHILEREG-SWESVQDWMDVLSGGE 575
Query: 998 QQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSL 1057
+QR+ MARLF+HKP+F ILDECT+A SVDVE+ +Y + +GIT T S R +L H
Sbjct: 576 KQRMAMARLFYHKPQFAILDECTSAVSVDVEDFIYSHCRKVGITLFTVSHRKSLWKHHEY 635
Query: 1058 ELRLIDGEGNWELRTIS 1074
L + DG GN+E + I+
Sbjct: 636 YLHM-DGRGNYEFKPIT 651
|
|
| UNIPROTKB|F5GYC1 ABCD3 "ATP-binding cassette sub-family D member 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
Identities = 206/605 (34%), Positives = 319/605 (52%)
Query: 486 LVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKY-VLEQDKASFVRLIGVSVLQ 544
+VP F K+ L+ +A ++VSRT+ D NGT ++ ++ + + F R + +
Sbjct: 1 MVPRTFCKETGYLVLIAVMLVSRTYC-DVWMIQNGTLIESGIIGRSRKDFKRYLLNFIAA 59
Query: 545 SAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHD 604
S + +++ L L +R+R+T++L + YL+ ++YK+ N+ ++ + DQ +T D
Sbjct: 60 MPLISLVNNFLKYGLNELKLCFRVRLTKYLYEEYLQAFTYYKMGNLDNRIANPDQLLTQD 119
Query: 605 LEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFG 664
+EK + L + + KP +DI+ + +++ + G +G A + AY+++ FL + G
Sbjct: 120 VEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMMAYLVVSGLFLTRLRRPIG 179
Query: 665 DLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFREXXXXXXXXXXXXXX 724
+T EQ+ EG +R+++ RL ++E +AF+ G REK + S FR+
Sbjct: 180 KMTITEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTVHSVFRKLVEHLHNFILFRFS 239
Query: 725 XXXXDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFG 784
D + K L V + + ++ R L ST EL ++ + A G
Sbjct: 240 MGFIDSIIAKYLATVVGYLVVSRPFLDLSHPRHLKSTHSELLEDYYQSGRMLLRMSQALG 299
Query: 785 DILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQ---------- 834
I+ R+ L+G RI EL ++L G E + SQ + Q
Sbjct: 300 RIVLAGREMTRLAGFTARITELMQVLKDLNHGKYERTMVSQQEKGIEGVQVIPLIPGAGE 359
Query: 835 ----DSI-SFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPV 889
D+I F + + TP+ +L R L FE+ G ++L+ GPNG GKSS+FRVL LWP+
Sbjct: 360 IIIADNIIKFDHVPLATPNGDVLIRDLNFEVRSGANVLICGPNGCGKSSLFRVLGELWPL 419
Query: 890 VSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKG 949
G LTKP E G +FYVPQRPY LGTLRDQ+IYP RE+ + KG
Sbjct: 420 FGGRLTKP------ERGK---LFYVPQRPYMTLGTLRDQVIYPDGREDQKR-------KG 463
Query: 950 EKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFH 1009
I D LK L+ V+L ++LERE GWD+ +W D+LS GE+QR+ MARLF+H
Sbjct: 464 --------ISDLVLKEYLDNVQLGHILEREG-GWDSVQDWMDVLSGGEKQRMAMARLFYH 514
Query: 1010 KPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWE 1069
KP+F ILDECT+A SVDVE +Y + +GIT T S R +L H L + DG GN+E
Sbjct: 515 KPQFAILDECTSAVSVDVEGYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHM-DGRGNYE 573
Query: 1070 LRTIS 1074
+ I+
Sbjct: 574 FKQIT 578
|
|
| UNIPROTKB|I3LI20 ABCD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
Identities = 201/615 (32%), Positives = 325/615 (52%)
Query: 473 RILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKY-VLEQDK 531
++ LR+ + K+++P F K+ L+ +A ++VSRT+ D NGT ++ ++ + +
Sbjct: 61 KVFFLRLTRILKIMIPRTFCKETGYLILIAIMLVSRTYC-DVWMIQNGTLIESGIIGRSR 119
Query: 532 ASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMS 591
F + + + S + ++ L L +RIR+T++L + YL+ ++YK+ N+
Sbjct: 120 KDFKKYLFNFIAAMPLISLVNNFLKFGLNELKLCFRIRLTKYLYEEYLQAFTYYKMGNLD 179
Query: 592 SKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLL 651
++ + DQ +T D+EK + L + + KP +DI+ + +++ + G +G A + AY+L+
Sbjct: 180 NRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMMAYLLV 239
Query: 652 GLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFREX 711
FL + G +T EQ+ EG +R+++ RL ++E +AF+ G REK I + FR+
Sbjct: 240 SGLFLTRLRRPIGKMTITEQKYEGEYRYVNSRLITNSEEIAFYSGNKREKQTIHAVFRKL 299
Query: 712 XXXXXXXXXXXXXXXXXDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRF 771
D+ + K V + + ++ R L S+ EL
Sbjct: 300 VEHLHNFILFRFSMGFIDNIIAKYFATVVGYLVVSGPFLDLSHPRHLKSSHSELLEDYYQ 359
Query: 772 LASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNST 831
++ + A G I+ R+ L+G RI EL ++L G E + SQ + +
Sbjct: 360 SGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGKYERTMVSQQEKGAQ 419
Query: 832 ------------DYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSV 879
+ + I F + + TP+ +L R L FE+ G ++L+ GPNG GKSS+
Sbjct: 420 GIPLIPGAGEIINADNIIKFDHVPLATPNGDILIRDLNFEVRSGANVLICGPNGCGKSSL 479
Query: 880 FRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAE 939
FRVL LWP+ G LTKP E G +FYVPQRPY LGTL Q+IYPL R
Sbjct: 480 FRVLGELWPLFGGRLTKP------ERGK---LFYVPQRPYMTLGTLSRQVIYPLGRF--- 527
Query: 940 LRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQ 999
+ +K D+ +L YL + V+L ++LERE GWD+ +W D+LS GE+Q
Sbjct: 528 --------RQQKYSDSGXVLKEYL----DNVQLGHILEREG-GWDSVQDWMDVLSGGEKQ 574
Query: 1000 RLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLEL 1059
R+ MARLF+HKP+F ILDECT+A SVDVE+ +Y + +GIT T S R +L H L
Sbjct: 575 RMAMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHHEYYL 634
Query: 1060 RLIDGEGNWELRTIS 1074
+ DG GN+E + I+
Sbjct: 635 HM-DGRGNYEFKQIT 648
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q94FB9 | AB1D_ARATH | 3, ., 6, ., 3, ., 4, 7 | 0.8070 | 0.9906 | 0.7965 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00012868001 | SubName- Full=Chromosome undetermined scaffold_408, whole genome shotgun sequence; (1173 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1075 | |||
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-147 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-108 | |
| pfam06472 | 282 | pfam06472, ABC_membrane_2, ABC transporter transme | 3e-92 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-80 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-76 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-74 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-61 | |
| pfam06472 | 282 | pfam06472, ABC_membrane_2, ABC transporter transme | 2e-35 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-27 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 8e-26 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-24 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-24 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-22 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-22 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 9e-22 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-21 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-20 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-20 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-20 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-20 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-19 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-19 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-19 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-19 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-19 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 9e-19 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-18 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-18 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-18 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-18 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-18 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 6e-18 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 7e-18 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 8e-18 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 8e-18 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-17 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-17 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 9e-17 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 9e-17 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-16 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-16 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 8e-16 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 8e-16 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 8e-16 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-15 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-15 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-15 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-15 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 8e-15 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-14 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-14 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-14 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-14 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-14 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 5e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 6e-14 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 9e-14 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 9e-14 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-13 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-13 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-13 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-13 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-13 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-13 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-13 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-13 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 5e-13 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 5e-13 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-13 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 6e-13 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 6e-13 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-13 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 9e-13 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-12 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-12 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-12 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-12 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-12 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-12 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-12 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-12 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-12 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 5e-12 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 7e-12 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 9e-12 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-11 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-11 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-11 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-11 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-11 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-11 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-11 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-11 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 4e-11 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 5e-11 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 5e-11 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 6e-11 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-11 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 6e-11 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 7e-11 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 9e-11 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-10 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-10 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-10 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-10 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-10 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-10 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-10 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-10 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-10 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-10 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-10 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-10 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 4e-10 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 6e-10 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 6e-10 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 6e-10 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 6e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-10 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 7e-10 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 7e-10 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 7e-10 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 9e-10 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 9e-10 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-09 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-09 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-09 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-09 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-09 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-09 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-09 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-09 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-09 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-09 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-09 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-09 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-09 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-09 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-09 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 5e-09 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 5e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-09 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 6e-09 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 6e-09 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-09 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-09 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 7e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-09 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 8e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 9e-09 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 9e-09 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 9e-09 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-08 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-08 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-08 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-08 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-08 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-08 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-08 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-08 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-08 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-08 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-08 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-08 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-08 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-08 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-08 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-08 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 5e-08 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 5e-08 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-08 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 6e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 6e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 7e-08 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 8e-08 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 8e-08 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 8e-08 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 8e-08 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 8e-08 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 8e-08 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 9e-08 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 9e-08 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-07 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-07 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-07 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-07 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-07 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-07 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-07 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-07 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-07 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-07 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-07 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-07 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-07 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-07 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-07 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 4e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 4e-07 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 5e-07 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 5e-07 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 6e-07 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 6e-07 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 6e-07 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 7e-07 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 7e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 7e-07 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 8e-07 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 8e-07 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 9e-07 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-06 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-06 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-06 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-06 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-06 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-06 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-06 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-06 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-06 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-06 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-06 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-06 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-06 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-06 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-06 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-06 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-06 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 4e-06 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 5e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-06 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 5e-06 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 6e-06 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 6e-06 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 6e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 7e-06 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 7e-06 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 8e-06 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 8e-06 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-05 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-05 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 1e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-05 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-05 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-05 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-05 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-05 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-05 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-05 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-05 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-05 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-05 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-05 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 4e-05 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 4e-05 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-05 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 4e-05 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-05 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 5e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-05 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-05 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-05 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 6e-05 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 6e-05 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 6e-05 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 6e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 6e-05 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 7e-05 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 7e-05 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 7e-05 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 7e-05 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 7e-05 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 7e-05 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 7e-05 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 8e-05 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 8e-05 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 8e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 9e-05 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 9e-05 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 9e-05 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-04 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-04 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-04 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-04 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-04 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-04 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-04 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-04 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-04 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-04 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 2e-04 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-04 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-04 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-04 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-04 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-04 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-04 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 3e-04 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-04 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 4e-04 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 4e-04 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-04 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-04 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-04 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 4e-04 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-04 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-04 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-04 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 5e-04 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 5e-04 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 5e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 5e-04 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 6e-04 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 6e-04 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 6e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 6e-04 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 7e-04 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 7e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 9e-04 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 0.001 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 0.001 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 0.001 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 0.001 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 0.001 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 0.001 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.001 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 0.001 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 0.001 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 0.001 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 0.001 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.001 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 0.001 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 0.001 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 0.001 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.001 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 0.002 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 0.002 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 0.002 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 0.002 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 0.002 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.002 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.002 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.002 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 0.002 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.002 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 0.002 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.002 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.002 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 0.002 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 0.003 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 0.003 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.003 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 0.003 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 0.003 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 0.003 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.003 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 0.003 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 0.003 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 0.003 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 0.003 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 0.004 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 0.004 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.004 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 0.004 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 454 bits (1171), Expect = e-147
Identities = 221/617 (35%), Positives = 336/617 (54%), Gaps = 59/617 (9%)
Query: 478 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRL 537
++ + K+L+P VF K+ L+ +AFL+VSRT++S +A+L+G ++ + +F +
Sbjct: 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWI 137
Query: 538 IGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDA 597
+ L + +SFI +I++L L L +R+R+T++L YL +FYKV N+ S+ +
Sbjct: 138 LFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNP 197
Query: 598 DQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLR 657
DQ +T D+EK + L + + KP +D++ +++++ G G A L+AY+ L
Sbjct: 198 DQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLT 257
Query: 658 SVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLL 717
+ P G LT EQ LEG +R++H RL ++E +AF+ G EK + S F L+EH L
Sbjct: 258 KLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNL 317
Query: 718 LLKKKWLFGILDDFVTKQLPHNVTWGLSLLYA-----MEHKGDRALVSTQGELAHAL--- 769
++K ++ +G LD+ V K TW L A + L ++ EL
Sbjct: 318 IIKFRFSYGFLDNIVAK-----YTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNN 372
Query: 770 -RFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGD--------DEI 820
R L A G ++ R L+G R+ L ++LD + G+ E
Sbjct: 373 GRLLLKAAD----ALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIES 428
Query: 821 SGSSQHKWNSTD------YQDS-ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNG 873
N YQD+ I F + ++TP+ +L L+FE+ G +LL+ GPNG
Sbjct: 429 GREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNG 488
Query: 874 SGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPL 933
GKSS+FR+L LWPV G LTKP++ +FYVPQRPY LGTLRDQIIYP
Sbjct: 489 CGKSSLFRILGELWPVYGGRLTKPAK---------GKLFYVPQRPYMTLGTLRDQIIYPD 539
Query: 934 SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 993
S E+ + R L D L+ IL+ V+L+++LER E GW A +W D+L
Sbjct: 540 SSEDMKRRGLS---------------DKDLEQILDNVQLTHILER-EGGWSAVQDWMDVL 583
Query: 994 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIP 1053
S GE+QR+ MARLF+HKP+F ILDECT+A SVDVE +YRL ++ GIT + S R +L
Sbjct: 584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWK 643
Query: 1054 FHSLELRLIDGEGNWEL 1070
+H L +DG G ++
Sbjct: 644 YHEYLLY-MDGRGGYQF 659
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 352 bits (904), Expect = e-108
Identities = 150/409 (36%), Positives = 229/409 (55%), Gaps = 25/409 (6%)
Query: 2 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 61
+ P GKL +EQ LEGEYR +HSRL ++E IAFY G E+ + F L H+
Sbjct: 256 LTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315
Query: 62 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTS 121
+++ + +G + + + KY + V ++ + P F P + +++ +
Sbjct: 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKT-HPAFLEMSEEELMQEFYNNGR 374
Query: 122 VIISLFQSLGTLSISSRRLNRLSGYADRIHELMVI-----------SRELSIED------ 164
+++ +LG L ++ R + RL+G+ R+ L+ + R IE
Sbjct: 375 LLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGR 434
Query: 165 KSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSL 224
S G + N I+F + +VTP G+VL+E+L+ +V G+NLLI GPNG GKSSL
Sbjct: 435 NSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSL 494
Query: 225 FRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP-L 283
FR+LG LWP+ G + KP G +FYVPQRPY +GTLRDQ+IYP +S+ L
Sbjct: 495 FRILGELWPVYGGRLTKPAKGK-----LFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGL 549
Query: 284 THGGMVELLKNVDLEYLLDRYPPEKEI-NWGDELSLGEQQRLGMARLFYHKPKFAILDEC 342
+ + ++L NV L ++L+R + +W D LS GE+QR+ MARLFYHKP+FAILDEC
Sbjct: 550 SDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDEC 609
Query: 343 TSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWR 391
TSAV+ D+E R G + ++SHR +L +H+ +L +DG G ++
Sbjct: 610 TSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHEYLLYMDGRGGYQ 658
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|219046 pfam06472, ABC_membrane_2, ABC transporter transmembrane region 2 | Back alignment and domain information |
|---|
Score = 295 bits (758), Expect = 3e-92
Identities = 101/273 (36%), Positives = 170/273 (62%)
Query: 478 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRL 537
R+ + K+L P F K+ LLA+A L+V RT++S +A L+G VK ++ ++ F+RL
Sbjct: 10 RLWRLLKILFPRWFSKEAGLLLALAALLVLRTFLSVLVAQLDGQLVKALVAKNARGFIRL 69
Query: 538 IGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDA 597
+ L + +SF+ ++++LT +LAL +R R+T+HL YL+ ++YK+ N+ + +
Sbjct: 70 LLKWALLAVPASFVNSALKYLTQKLALRFRTRLTRHLHDEYLKNRTYYKLSNLDGRIDNP 129
Query: 598 DQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLR 657
DQRIT D+EK + S L + ++KP +DI+ FT+ + L+G G AIL+ Y+LL LR
Sbjct: 130 DQRITQDVEKFCSSSSDLYSNLLKPILDIILFTFILWRLSGWLGPAILFLYVLLSTVILR 189
Query: 658 SVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLL 717
+ P FG L + EQ+LEG FR++H RL +AE +AF+ G REK ++ RF+ L++H
Sbjct: 190 RLGPPFGKLVAEEQRLEGDFRYLHSRLITNAEEIAFYRGEEREKKQLQRRFKSLIDHMRR 249
Query: 718 LLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAM 750
+L+++ +G ++DFV K + + L +
Sbjct: 250 ILRRRLWYGFIEDFVLKYTWSILGYVLCAVPIF 282
|
This domain covers the transmembrane of a small family of ABC transporters and shares sequence similarity with pfam00664. Mutations in this domain in human ABCD3 (PMP70) are believed responsible for Zellweger Syndrome-2; mutations in human ABCD1 (ALD) are responsible for recessive X-linked adrenoleukodystrophy. A Saccharomyces cerevisiae homolog is involved in the import of long-chain fatty acids. Length = 282 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 275 bits (705), Expect = 1e-80
Identities = 143/564 (25%), Positives = 238/564 (42%), Gaps = 69/564 (12%)
Query: 528 EQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKV 587
+D A+F + + V + + + + L L L WR +T+ LL +L +Y++
Sbjct: 79 RRDLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRL 138
Query: 588 -FNMSSKSID-ADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFT---W----RMKALTG 638
ID DQRI D+ T L G+++ + ++ FT W + G
Sbjct: 139 AQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIG 198
Query: 639 QRGVAI-------LYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESV 691
I + Y + + L Q+LE FR+ R+R +AE++
Sbjct: 199 GFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAI 258
Query: 692 AFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME 751
A + G E+ ++ RF +L + + L + + +G +
Sbjct: 259 ALYRGEKVERRRLDDRFDAVLGN----------WRRLVRAQIRLTWFQLGYGWLSVVLPI 308
Query: 752 HKGDRALVSTQ---GELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEE 808
S Q G L A+ V S + ++ + + + R+ E +
Sbjct: 309 LIAAPRYFSGQITFGGLMQAVGAFGQVHS----SLSWFIDNYDAIADWRATLLRLAEFRQ 364
Query: 809 LLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLV 868
L+AAQ ++ + + + + I+ L + TP + L +L FE+ PG+ LL+
Sbjct: 365 ALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLI 424
Query: 869 TGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQ 928
TG +G+GK+S+ R L GLWP SG ++ P + + ++PQRPY GTLR+
Sbjct: 425 TGESGAGKTSLLRALAGLWPWGSGRISMP---------ADSALLFLPQRPYLPQGTLREA 475
Query: 929 IIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLN 988
+ YP + + D+ L +L V L L ER D
Sbjct: 476 LCYPNA--------------------APDFSDAELVAVLHKVGLGDLAER----LDEEDR 511
Query: 989 WEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDM--GITFVTSS 1046
W+ +LS GEQQRL ARL HKPK+ LDE T+A + E++LY+L K+ T ++
Sbjct: 512 WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVG 571
Query: 1047 QRPALIPFHSLELRLIDGEGNWEL 1070
RP L FHS +L L + +
Sbjct: 572 HRPTLWNFHSRQLEL-LDDAGGQN 594
|
Length = 604 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 247 bits (634), Expect = 3e-76
Identities = 90/209 (43%), Positives = 117/209 (55%), Gaps = 43/209 (20%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
IE + + TP G VL+++L+ +++PG LLITGP+G+GKSSLFR L GLWP SG I
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 242 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 301
P ++ ++PQRPY +GTLR+QLIYP
Sbjct: 61 PEGE-----DLLFLPQRPYLPLGTLREQLIYP---------------------------- 87
Query: 302 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM 361
W D LS GEQQRL ARL HKPKF LDE TSA+ + E+R ++ +
Sbjct: 88 ----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL 137
Query: 362 GTSCITISHRPALVAFHDVVLSLDGEGEW 390
G + I++ HRP+L FHD VL LDGEG W
Sbjct: 138 GITVISVGHRPSLWKFHDRVLDLDGEGGW 166
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 258 bits (660), Expect = 2e-74
Identities = 117/404 (28%), Positives = 179/404 (44%), Gaps = 59/404 (14%)
Query: 9 FGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDH 68
+L + Q+LE ++R R+R +AE+IA Y GE E + +F VL +
Sbjct: 230 LIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRF-------DAVLGN- 281
Query: 69 WWFGMIQDFLLKYLGAT---------VAVILIIEPFFAGNLK-PDTSTLGRA--KMLSNL 116
W + ++ + +++ +F+G + A ++ S+L
Sbjct: 282 WR--RLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSL 339
Query: 117 RYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYF 176
+ I + ++ + RL E ++ + P R G R F
Sbjct: 340 SW----FIDNYDAIADWRATLLRL----------AEFRQALEAAQMDTEKPARTGRRIDF 385
Query: 177 SEAN--YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL 234
+ I + + TP G L+ L +V PG LLITG +G+GK+SL R L GLWP
Sbjct: 386 DDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW 445
Query: 235 VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT----SDQEVEPLTHGGMVE 290
SG I+ P + + ++PQRPY GTLR+ L YP SD E+ V
Sbjct: 446 GSGRISMPA-----DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAEL--------VA 492
Query: 291 LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 350
+L V L L +R ++E W LS GEQQRL ARL HKPK+ LDE TSA+ +
Sbjct: 493 VLHKVGLGDLAERL--DEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEET 550
Query: 351 EERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGEGEWRV 392
E+R ++ + I++ HRP L FH L L + +
Sbjct: 551 EDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLDDAGGQN 594
|
Length = 604 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 206 bits (527), Expect = 1e-61
Identities = 90/232 (38%), Positives = 116/232 (50%), Gaps = 66/232 (28%)
Query: 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 896
I L + TP ++L + L+FEI PG LL+TGP+G+GKSS+FR L GLWP SG +
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 897 PSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTT 956
P G + ++PQRPY LGTLR+Q+IYP
Sbjct: 61 P---------EGEDLLFLPQRPYLPLGTLREQLIYP------------------------ 87
Query: 957 NILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGIL 1016
WD D+LS GEQQRL ARL HKPKF L
Sbjct: 88 --------------------------WD------DVLSGGEQQRLAFARLLLHKPKFVFL 115
Query: 1017 DECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNW 1068
DE T+A + E++LY+L K++GIT ++ RP+L FH L L DGEG W
Sbjct: 116 DEATSALDEESEDRLYQLLKELGITVISVGHRPSLWKFHDRVLDL-DGEGGW 166
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|219046 pfam06472, ABC_membrane_2, ABC transporter transmembrane region 2 | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 2e-35
Identities = 46/96 (47%), Positives = 68/96 (70%)
Query: 1 MMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH 60
++R P FGKL+++EQ+LEG++R LHSRL T+AE IAFY GE +E+ +Q++FK+L H
Sbjct: 187 ILRRLGPPFGKLVAEEQRLEGDFRYLHSRLITNAEEIAFYRGEEREKKQLQRRFKSLIDH 246
Query: 61 MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF 96
MR +L W+G I+DF+LKY + + +L P F
Sbjct: 247 MRRILRRRLWYGFIEDFVLKYTWSILGYVLCAVPIF 282
|
This domain covers the transmembrane of a small family of ABC transporters and shares sequence similarity with pfam00664. Mutations in this domain in human ABCD3 (PMP70) are believed responsible for Zellweger Syndrome-2; mutations in human ABCD1 (ALD) are responsible for recessive X-linked adrenoleukodystrophy. A Saccharomyces cerevisiae homolog is involved in the import of long-chain fatty acids. Length = 282 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-27
Identities = 63/214 (29%), Positives = 93/214 (43%), Gaps = 54/214 (25%)
Query: 182 IEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
IEF V P V ++++L ++PG + I GP+GSGKS+L ++L L+ SG I
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 241 KPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 294
GV L K I YVPQ P+ GT+R+ N
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRE-------------------------N 95
Query: 295 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF 354
+ LS G++QR+ +AR P ILDE TSA+ + E
Sbjct: 96 I--------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALI 135
Query: 355 CAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 386
+RA+ G + I I+HR + + D ++ LD
Sbjct: 136 LEALRALAKGKTVIVIAHRLSTIRDADRIIVLDD 169
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 8e-26
Identities = 99/394 (25%), Positives = 162/394 (41%), Gaps = 48/394 (12%)
Query: 12 LMSKEQQLEGEYRQLHSRLRTHA-ESI-------AFYGGENKEESHIQQKFKALTRHMRV 63
L K ++L R+ L ES+ AF E ++F+ +R
Sbjct: 172 LARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGA-----EDRELKRFEEANEELRR 226
Query: 64 VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVI 123
+ L+ L + V+++ G + +L + + + Y +
Sbjct: 227 ANLRASRLEALLAPLMLLLSSLGTVLVL----ALGGFLVLSGSLTVGALAAFILY----L 278
Query: 124 ISLFQSLGTLSISSRRLNRLSGYADRIHELMVISREL-SIEDKSPQRNGSRNYFSEANYI 182
+ L + L L R S A+R+ EL+ E+ D GS I
Sbjct: 279 LRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGS---------I 329
Query: 183 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 242
EF V P ++++++ +EPG + I GP+GSGKS+L ++L L+ SG I
Sbjct: 330 EFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILID 389
Query: 243 GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEP-LTHGGMVELLK 293
G+ L K I V Q P GT+R+ + P +D+E+E L E +
Sbjct: 390 GIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIA 449
Query: 294 NVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 353
N L D E+ G LS G++QRL +AR P ILDE TSA+ T+ E
Sbjct: 450 N--LPDGYDTIVGER----GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEAL 503
Query: 354 FCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 385
++ + G + + I+HR + + D ++ LD
Sbjct: 504 IQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLD 537
|
Length = 567 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 3e-24
Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 18/217 (8%)
Query: 182 IEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
IEF V P ++N++L + G + I G GSGKS+L ++L GL+ SG +
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 241 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLI--YPLTSDQEV-EPLTHGGMVEL 291
G +DL + I YVPQ GTLRD + PL D+ + G+ +
Sbjct: 63 LDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDF 122
Query: 292 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 351
+ D E+ G LS G++Q + +AR + P +LDE TSA+ + E
Sbjct: 123 VNKHPNGL--DLQIGER----GRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176
Query: 352 ERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 386
ER ++R + + I I+HRP+L+ D ++ +D
Sbjct: 177 ERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDS 213
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 4e-24
Identities = 80/281 (28%), Positives = 129/281 (45%), Gaps = 29/281 (10%)
Query: 129 SLGTL----SISSR---RLNRLSGYADRIHELMVISREL-SIEDKSPQRNGSRNYFSEAN 180
+LG L ++ + RLS + V L I D P++ G +
Sbjct: 408 TLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPK 467
Query: 181 ---YIEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 236
IEF V P ++E+L+L++ PG + I G +GSGKS+L ++L GL+
Sbjct: 468 LQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ 527
Query: 237 GHIAKPGVG-SDLNKE-----IFYVPQRPYTAVGTLRDQLI--YPLTSDQEV-EPLTHGG 287
G I GV +D++ + YV Q P+ G++R+ + P +D+E+ E G
Sbjct: 528 GRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAG 587
Query: 288 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 347
E ++N+ + Y D E N LS G++QRL +AR KPK +LDE TSA+
Sbjct: 588 AHEFIENLPMGY--DTPVGEGGAN----LSGGQRQRLALARALLSKPKILLLDEATSALD 641
Query: 348 TDMEERFCAKVRAMGTSC--ITISHRPALVAFHDVVLSLDG 386
+ E + + I I+HR + + D ++ LD
Sbjct: 642 PETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQ 682
|
Length = 709 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 2e-22
Identities = 56/213 (26%), Positives = 89/213 (41%), Gaps = 55/213 (25%)
Query: 182 IEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
+E V P ++ N++ +EPG +L I GP+GSGKS+L R++ GL SG +
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 241 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 294
G ++L + Y+PQ G++ + N
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAE-------------------------N 95
Query: 295 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF 354
+ LS G++QRLG+AR Y P+ +LDE S + + E
Sbjct: 96 I--------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERAL 135
Query: 355 CAKVRAM---GTSCITISHRPALVAFHDVVLSL 384
+ A+ G + I I+HRP +A D +L L
Sbjct: 136 NQAIAALKAAGATRIVIAHRPETLASADRILVL 168
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-22
Identities = 69/214 (32%), Positives = 102/214 (47%), Gaps = 17/214 (7%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
+EFSGV V P + ++ V PG + + GP+G+GKS+L +L G G IA
Sbjct: 322 LEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAV 381
Query: 242 PGVG------SDLNKEIFYVPQRPYTAVGTLRD--QLIYPLTSDQEV-EPLTHGGMVELL 292
GV +I +VPQ P+ GT+ + +L P SD E+ E L G+ E +
Sbjct: 382 NGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFV 441
Query: 293 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 352
L LD E G LS G+ QRL +AR F +LDE T+ + + E
Sbjct: 442 A--ALPQGLDTPIGEG----GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEA 495
Query: 353 RFCAKVRAM--GTSCITISHRPALVAFHDVVLSL 384
+RA+ G + + ++HR AL A D ++ L
Sbjct: 496 EVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 9e-22
Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 24/241 (9%)
Query: 161 SIEDKSPQRNGSRNYFSEANY----IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGP 216
++ + GS AN I + P G + +L L ++ G + G
Sbjct: 296 TLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGA 355
Query: 217 NGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSDLNKEIFYVPQRPYTAVGTLRDQL 270
+G+GKS+L +L G G I G+ K+I +V Q PY GT+R+ +
Sbjct: 356 SGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENI 415
Query: 271 IY--PLTSDQEV-EPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGM 326
+ P SD+E+ L G++E + D L+ ++ G LS G+ QRL +
Sbjct: 416 LLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEG--------GAGLSGGQAQRLAL 467
Query: 327 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSL 384
AR +LDE T+ + + E+ ++ + + + I+HR A D ++ L
Sbjct: 468 ARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVL 527
Query: 385 D 385
D
Sbjct: 528 D 528
|
Length = 559 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 1e-21
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 21/218 (9%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
IEF V +++++ ++PG + I GP G+GK++L +L + G I
Sbjct: 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62
Query: 242 PGV-GSDLNKE-----IFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLK 293
G+ D++++ I V Q + GT+ + + P +D+EV E K
Sbjct: 63 DGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVI--------EAAK 114
Query: 294 NVDLEYLLDRYPP--EKEIN-WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 350
+ + P + + G LS GE+Q L +AR PK ILDE TS + T+
Sbjct: 115 EAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTET 174
Query: 351 EERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 386
E+ + + G + I I+HR + + D +L LD
Sbjct: 175 EKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDD 212
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 2e-20
Identities = 65/234 (27%), Positives = 102/234 (43%), Gaps = 45/234 (19%)
Query: 182 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 238
IE + G V+ ++L +E G + I GP+GSGKS+L +LGGL SG
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 239 IAKPGV----------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGG 287
+ G + + I +V Q L+ LT+ + VE PL G
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFN---------LLPDLTALENVELPLLLAG 111
Query: 288 MV---------ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 338
+ ELL+ V L L+ YP ELS G+QQR+ +AR + PK +
Sbjct: 112 VPKKERRERAEELLERVGLGDRLNHYP--------SELSGGQQQRVAIARALANDPKIIL 163
Query: 339 LDECTSAVTTDMEER----FCAKVRAMGTSCITISHRPALVAFHDVVLSL-DGE 387
DE T + ++ + + GT+ + ++H P L + D ++ L DG+
Sbjct: 164 ADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGK 217
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 2e-20
Identities = 62/200 (31%), Positives = 90/200 (45%), Gaps = 23/200 (11%)
Query: 200 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 253
N L + G + I G +GSGKS+L ++L G W G I GV L + I
Sbjct: 356 NFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415
Query: 254 YVPQRPYTAVGTLRD--QLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 311
+ QR + GTLRD +L P SD+E + L+ V LE LL P+
Sbjct: 416 VLTQRVHLFSGTLRDNLRLANPDASDEE--------LWAALQQVGLEKLL-ESAPDGLNT 466
Query: 312 WGDE----LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSC 365
W E LS GE++RL +AR H +LDE T + E + A + G +
Sbjct: 467 WLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTL 526
Query: 366 ITISHRPALVAFHDVVLSLD 385
+ ++HR + D ++ LD
Sbjct: 527 LMVTHRLRGLERMDRIIVLD 546
|
Length = 573 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 4e-20
Identities = 69/218 (31%), Positives = 106/218 (48%), Gaps = 20/218 (9%)
Query: 182 IEFSGVKVVTP--TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 239
IEF V P L +N++L + PG + I G GSGKS+L ++L GL+ G +
Sbjct: 464 IEFRNVSFAYPGQETPAL-DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV 522
Query: 240 AKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEV-EPLTHGGMVE 290
GV +DL + I YVPQ P GTLRD + P D+E+ G+ E
Sbjct: 523 LLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTE 582
Query: 291 LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 350
++ LD E+ G LS G++Q + +AR P +LDE TSA+
Sbjct: 583 FVRR--HPDGLDMQIGER----GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636
Query: 351 EERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 386
EERF +++ G + + ++HR +L+ D ++ +D
Sbjct: 637 EERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDN 674
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 4e-20
Identities = 63/214 (29%), Positives = 94/214 (43%), Gaps = 36/214 (16%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEI 252
G+ ++E+++ +V+PG L I GPNG+GKS+L + + GL SG I G K I
Sbjct: 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI 70
Query: 253 FYVPQR-------PYTA--------VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL 297
YVPQR P + G +V+ E L+ V L
Sbjct: 71 GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVD--------EALERVGL 122
Query: 298 EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF--- 354
L DR +I ELS G+QQR+ +AR P +LDE + V +E
Sbjct: 123 SELADR-----QI---GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYEL 174
Query: 355 CAKVRAMGTSCITISHRPALV-AFHDVVLSLDGE 387
++R G + + ++H LV + D VL L+
Sbjct: 175 LRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 1e-19
Identities = 112/525 (21%), Positives = 200/525 (38%), Gaps = 98/525 (18%)
Query: 555 IRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSG 614
I HL RL L R +HLL+ S++ +S+ +LE++ L+G
Sbjct: 218 IAHLGKRLDLELSGRFFRHLLRL---PLSYF-----EKRSVGEIISRVRELEQIREFLTG 269
Query: 615 LVTGMVKPSVDIL----------WFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFG 664
+ ++ +D+L ++W++ + +A + +L+ L F P
Sbjct: 270 SILTLI---IDLLFALIFLAVMFLYSWKLTLIV----LAAIPLNVLITLIF----QPLLR 318
Query: 665 DLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAM-IESRFRELLEHSLL-LLKKK 722
T + + + V G KA+ E RFR ++ L +
Sbjct: 319 RKTRKLIEESA---------EQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIG 369
Query: 723 WLFGILDDFV--TKQLPHNVTWGLSLLY-----AMEHKGDRALVSTQGELAHALRFLASV 775
+ L + K L ++ + +L+ +E + ++ G+L A LA
Sbjct: 370 FKTEKLALILNTIKSLLQQLS-SVLILWFGAILVLEGE-----LTL-GQLV-AFNMLAGY 421
Query: 776 VSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQD 835
+ F + + R L ++LD + E + H Q
Sbjct: 422 FISPITRLSQLWT---DFQQAKVALER---LGDILDTPP--EQEGDKTLIHLPKL---QG 470
Query: 836 SISFSKLDI-ITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL 894
I F + P + L+ EI PG+ + + G +GSGKS++ ++L GL+ G +
Sbjct: 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRI 530
Query: 895 T---KPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQII--YPLSREEAELRALKLHGKG 949
ID + + YV Q P+ G++R+ I P + +E + A +L G
Sbjct: 531 LLDGVDLNDIDLASLRRQ-VGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAG-- 587
Query: 950 EKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFH 1009
+++ + G Y E G AN LS G++QRL +AR
Sbjct: 588 ---------AHEFIENLPMG----YDTPVGEGG--AN------LSGGQRQRLALARALLS 626
Query: 1010 KPKFGILDECTNATSVDVEEQLYR--LAKDMGITFVTSSQRPALI 1052
KPK +LDE T+A + E + + L G T + + R + I
Sbjct: 627 KPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTI 671
|
Length = 709 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 1e-19
Identities = 69/220 (31%), Positives = 98/220 (44%), Gaps = 49/220 (22%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI--------AKPGVGSDLN 249
V++++ + G L + G +GSGKS+L R+L GL P SG I G L
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 250 KEIFYVPQRPYTA---VGTLRDQLIYPLTSDQEVEPLTHGG-----MVELLKNVDL-EYL 300
+ I V Q PY++ T+ D L PL + G + ELL+ V L
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEPL----RIHGGGSGAERRARVAELLELVGLPPEF 422
Query: 301 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--VTT---------D 349
LDRYP ELS G++QR+ +AR +PK ILDE SA V+ D
Sbjct: 423 LDRYP--------HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD 474
Query: 350 MEERFCAKVRAMGTSCITISHRPALVAF--HDVVLSLDGE 387
++E G + + ISH A+V + V + DG
Sbjct: 475 LQEEL-------GLTYLFISHDLAVVRYIADRVAVMYDGR 507
|
Length = 539 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 1e-19
Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 44/225 (19%)
Query: 182 IEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 238
+E + V PTG +++++ ++ G L + G +GSGKS+L R + GL SG
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 239 I---------AKPGVGSDLNKEIFYVPQRPYTAVG---TLRDQLIYPLTS--DQEVEPLT 284
I + KEI V Q P +++ T+ +Q+ PL +
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR 121
Query: 285 HGGMVELLKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 343
++ LL V L E +L+RYP ELS G++QR+ +AR PK I DE T
Sbjct: 122 KEAVLLLLVGVGLPEEVLNRYP--------HELSGGQRQRVAIARALALNPKLLIADEPT 173
Query: 344 SA--VTT---------DMEERFCAKVRAMGTSCITISHRPALVAF 377
SA V+ ++E G + + I+H +VA
Sbjct: 174 SALDVSVQAQILDLLKKLQEEL-------GLTLLFITHDLGVVAK 211
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 1e-19
Identities = 62/232 (26%), Positives = 98/232 (42%), Gaps = 45/232 (19%)
Query: 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI- 239
IE + V+ ++E+++L VE G + GPNG+GKS+L + + GL SG I
Sbjct: 4 MIEVENL-TVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 240 --AKPGVGSDLNKEIFYVPQR------------------PYTAVGTLRDQLIYPLTSDQE 279
KP I YVPQ+ Y G R ++
Sbjct: 63 IFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR---RLNKKDKEK 119
Query: 280 VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 339
V+ E L+ V +E L DR +I ELS G++QR+ +AR P +L
Sbjct: 120 VD--------EALERVGMEDLRDR-----QI---GELSGGQKQRVLLARALAQNPDLLLL 163
Query: 340 DECTSAVTTDMEERFCA---KVRAMGTSCITISHRPALV-AFHDVVLSLDGE 387
DE + V ++ ++R G + + ++H LV A+ D V+ L+
Sbjct: 164 DEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 2e-19
Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 38/215 (17%)
Query: 183 EFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
E + P G ++++L ++ G +LI GPNGSGKS+L R+L GL SG +
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 242 PGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGM------ 288
G +L +++ V Q P DQ P T ++EV L + G+
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNP-------DDQFFGP-TVEEEVAFGLENLGLPEEEIE 112
Query: 289 ---VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
E L+ V LE L DR P LS G++QR+ +A + P +LDE T+
Sbjct: 113 ERVEEALELVGLEGLRDRSP--------FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAG 164
Query: 346 V----TTDMEERFCAKVRAMGTSCITISHRPALVA 376
+ ++ E K++A G + I ++H L+
Sbjct: 165 LDPAGRRELLELL-KKLKAEGKTIIIVTHDLDLLL 198
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 9e-19
Identities = 64/206 (31%), Positives = 94/206 (45%), Gaps = 45/206 (21%)
Query: 197 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-------AKPGVGSDLN 249
+ N++L++E G L I G +GSGKS+L R+L GL SG I A
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81
Query: 250 KEIFYVPQRPYTAVGTLR--DQLIYPLTSDQEVEPLTHGGM-------VELLKNVDL-EY 299
+ + V Q PY+++ R +++ EPL G+ ELL V L
Sbjct: 82 RPVQMVFQDPYSSLNPRRTVGRILS--------EPLRPHGLSKSQQRIAELLDQVGLPPS 133
Query: 300 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV- 358
LDR P ELS G++QR+ +AR +PK ILDE TSA+ ++ A++
Sbjct: 134 FLDRRP--------HELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ----AQIL 181
Query: 359 -------RAMGTSCITISHRPALVAF 377
+ G + + ISH ALV
Sbjct: 182 NLLLELKKERGLTYLFISHDLALVEH 207
|
Length = 252 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 1e-18
Identities = 112/528 (21%), Positives = 198/528 (37%), Gaps = 70/528 (13%)
Query: 537 LIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSID 596
L+ +++L + + L ++ R + + LL+ L SF+ +KS D
Sbjct: 58 LLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPL---SFFD----KAKSGD 110
Query: 597 ADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLG-- 654
R+T+D+E ++ +S ++ + + ++ + +L+ + + +L LL L
Sbjct: 111 LISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLS 170
Query: 655 -FLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLE 713
R + +L + E L + FG RE E EL
Sbjct: 171 LLARKSRKLSRRVREALGELNA---RLLESLSGIRV-IKAFGAEDRELKRFEEANEELRR 226
Query: 714 HSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLA 773
+L + + L L ++ ++ L L + G L LA
Sbjct: 227 ANLRASRLEALLAPLMLLLS-----SLGTVLVLALG-------GFLVLSGSLTVGA--LA 272
Query: 774 SVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDY 833
+ + IL+L L L ELLD E+ ++
Sbjct: 273 AFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEE----PEVEDPPDPLKDT--- 325
Query: 834 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS 893
SI F + P +K + + ++F I PG+ + + GP+GSGKS++ ++L L+ SG
Sbjct: 326 IGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGE 385
Query: 894 LT---KPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIY---PLSREEAELRALKLHG 947
+ + I ++ I V Q P GT+R+ I + EE E ALKL
Sbjct: 386 ILIDGIDIRDISLDSLRK-RIGIVSQDPLLFSGTIRENIALGRPDATDEEIE-EALKL-- 441
Query: 948 KGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGMARL 1006
N + + G+D + + LS G++QRL +AR
Sbjct: 442 --------ANAHE--------------FIANLPDGYDTIVGERGVNLSGGQRQRLAIARA 479
Query: 1007 FFHKPKFGILDECTNATSVDVEEQLYRLAKDM--GITFVTSSQRPALI 1052
P ILDE T+A + E + K + G T + + R + I
Sbjct: 480 LLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTI 527
|
Length = 567 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 1e-18
Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 19/162 (11%)
Query: 193 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKE 251
++ N++L V G + ITGP+G GKS+L +++ L SG + G S L E
Sbjct: 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPE 73
Query: 252 IF-----YVPQRPYTAVGTLRDQLIYP-LTSDQEVEPLTHGGMVELLKNVDL-EYLLDRY 304
+ Y Q P T+ D LI+P ++ + ++LL L + +L
Sbjct: 74 AYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDR---AAALDLLARFALPDSILT-- 128
Query: 305 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 346
K I ELS GE+QR+ + R PK +LDE TSA+
Sbjct: 129 ---KNI---TELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164
|
Length = 223 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 2e-18
Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 43/238 (18%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D 247
G ++++L+ + G I GPNGSGKS+L + L GL SG + G +
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE 73
Query: 248 LNKEIFYVPQRPYTAVG-TLRD---------QLIYPLTSDQEVEPLTHGGMVELLKNVDL 297
L K++ YVPQ P G T+ + ++ S ++ E + E L+ + L
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE-----IVEEALELLGL 128
Query: 298 EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME------ 351
E+L DR DELS GE+QR+ +AR + +LDE TS + D+
Sbjct: 129 EHLADRP-------V-DELSGGERQRVLIARALAQETPILLLDEPTSHL--DIAHQIEVL 178
Query: 352 ERFCAKVRAMGTSCITISHRPALVAF--HDVVLSLDGEGEWRVHDKRDGSSVVTKSGI 407
E R G + + + H L A ++L DG ++ + V+T+ +
Sbjct: 179 ELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDG----KIVAQGTPEEVLTEENL 232
|
Length = 258 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 2e-18
Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 20/219 (9%)
Query: 182 IEFSGVKVVTPTGN-VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
+ V +V P G + ++ ++ G L I GP+GSGKS+L R++ G+WP SG +
Sbjct: 317 LSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376
Query: 241 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY---PLTSDQEVEPLTHGGMVEL 291
G K I Y+PQ GT+ + + ++ +E G+ EL
Sbjct: 377 LDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHEL 436
Query: 292 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 351
+ + Y D G LS G++QR+ +AR Y PK +LDE S + + E
Sbjct: 437 ILRLPDGY--DTVIGPG----GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGE 490
Query: 352 ERFCA---KVRAMGTSCITISHRPALVAFHDVVLSL-DG 386
+ ++A G + + I+HRP+L+ D +L L DG
Sbjct: 491 QALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDG 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 2e-18
Identities = 61/265 (23%), Positives = 109/265 (41%), Gaps = 33/265 (12%)
Query: 125 SLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGS----RNYFSEAN 180
+ F++ L ++++L R+ A+RI E+ ++ P GS
Sbjct: 282 AAFEAFAALPAAAQQLTRVRAAAERIVEV--------LDAAGPVAEGSAPAAGAVGLGKP 333
Query: 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
+E + P +++ ++L + PG + I GP+GSGKS+L L GL + G +
Sbjct: 334 TLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVT 393
Query: 241 KPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELL 292
GV ++ + + Q + T+R+ L P +D+E+ L
Sbjct: 394 LDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELW--------AAL 445
Query: 293 KNVDLEYLLDRYPPEKEINWGDE---LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 349
+ V L L P + G+ LS GE+QRL +AR +LDE T + +
Sbjct: 446 ERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAE 505
Query: 350 MEERFCAKVRAM--GTSCITISHRP 372
+ + A G + + I+H
Sbjct: 506 TADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 6e-18
Identities = 66/228 (28%), Positives = 103/228 (45%), Gaps = 32/228 (14%)
Query: 182 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 238
IE V + G VE ++ L++E G + I GP+GSGKS+L +LGGL SG
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 239 IAKPGV-GSDLN---------KEIFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLT 284
+ G + L+ K+I +V Q P T+ + + PL +
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD---LTVLENVELPLLIAGKSAGRR 118
Query: 285 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 344
ELL+ + LE L + P ELS G+QQR+ +AR + PK + DE T
Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPS-------ELSGGQQQRVAIARALINNPKIILADEPTG 171
Query: 345 AVTTDMEERFCAKVRAM----GTSCITISHRPALVAFHDVVLSL-DGE 387
+ + + +R + G + I ++H P L + D V+ L DG+
Sbjct: 172 NLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 7e-18
Identities = 59/235 (25%), Positives = 91/235 (38%), Gaps = 45/235 (19%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA- 240
IE V V G ++ +L+ +V PG + I GPNG+GK++L +L G P SG +
Sbjct: 32 IELKNV-SVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTL 90
Query: 241 ------KPGVGSDLNKEIFYVP------QRPYTAVGTLRDQL---------IYPLTSDQE 279
K +L K I V R V RD + IY E
Sbjct: 91 LGRRFGKGETIFELRKRIGLVSSELHERFRVRETV---RDVVLSGFFASIGIYQEDLTAE 147
Query: 280 VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 339
LL+ + ++L DR +G LS GEQ+R+ +AR P+ IL
Sbjct: 148 DL----AAAQWLLELLGAKHLADRP-------FGS-LSQGEQRRVLIARALVKDPELLIL 195
Query: 340 DECTSAVTTDMEERFCAKV-----RAMGTSCITISHRP--ALVAFHDVVLSLDGE 387
DE + E+ ++ + + ++H F +L +GE
Sbjct: 196 DEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 8e-18
Identities = 63/259 (24%), Positives = 91/259 (35%), Gaps = 47/259 (18%)
Query: 798 GGINRIFELEELLDAAQPGDDEISGSSQH-KWNSTDYQDSISFSKLDIITPSQKLLARQL 856
+++F L E P SG IS L P K L
Sbjct: 289 AAADKLFTLLE-----SPVATPGSGEKAEVANEP---PIEISLENLSFRYPDGKPALSDL 340
Query: 857 TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIFY 913
I G+ + G +G+GKS++ +L G G + + + EA I +
Sbjct: 341 NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK-QISW 399
Query: 914 VPQRPYTCLGTLRDQI-IYPLSREEAEL-RALKLHGKGEKLVDTTNILDSYLKTILEGVR 971
V Q PY GT+R+ I + + E+ AL G E V + LD+ I EG
Sbjct: 400 VSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLE-FVPKPDGLDT---VIGEGGA 455
Query: 972 LSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVE--- 1028
LS G+ QRL +AR +LDE T +D E
Sbjct: 456 G--------------------LSGGQAQRLALARALLSPASLLLLDEPT--AHLDAETEQ 493
Query: 1029 ---EQLYRLAKDMGITFVT 1044
+ L LAK + +T
Sbjct: 494 IILQALQELAKQKTVLVIT 512
|
Length = 559 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 8e-18
Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 28/178 (15%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
IE + ++ ++ +VEPG + GPNG+GK++L ++L GL SG I
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64
Query: 242 PGVGSDLNKE-------IFYVPQRPY-----TAVGTLRDQL-IYPLTSDQEVEPLTHGGM 288
G D+ KE I YVPQ P T L +Y L+ ++ E +
Sbjct: 65 LGY--DVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIE---- 118
Query: 289 VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 346
ELL+ LE ++ LS G +QRL +A H P+ ILDE TS +
Sbjct: 119 -ELLELFGLEDKANKKV--------RTLSGGMKQRLSIALALLHDPELLILDEPTSGL 167
|
Length = 293 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 1e-17
Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 28/195 (14%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKPGVGSDLNK 250
G ++++L+L + G + +TG NG+GK++L ++L GL SG I KP + K
Sbjct: 12 GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRK 71
Query: 251 EIFYVPQRPYTAVG--TLRDQLIY--PLTSD--QEVEPLTHGGMVELLKNVDLEYLLDRY 304
I YV Q + ++R++L+ ++ E +LK++DL L +R+
Sbjct: 72 SIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAE--------TVLKDLDLYALKERH 123
Query: 305 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AM 361
P LS G++QRL +A I DE TS + ER +R A
Sbjct: 124 P--------LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175
Query: 362 GTSCITISHRPALVA 376
G + I I+H +A
Sbjct: 176 GKAVIVITHDYEFLA 190
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 4e-17
Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 30/222 (13%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-- 239
IE + P +++++L++E G +L+ GPNGSGKS+L ++L GL SG +
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63
Query: 240 -----AKPGVGSDLNKEIFYVPQRPYT--AVGTLRDQLIYPLT----SDQEVEPLTHGGM 288
+ +L +++ V Q P T+ D++ + L +E+E
Sbjct: 64 DGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVA--- 120
Query: 289 VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTT 348
E L+ V LE LLDR P LS G++QR+ +A + P+ +LDE T+ +
Sbjct: 121 -EALELVGLEELLDRPP--------FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDP 171
Query: 349 DMEERFCAKVRAM----GTSCITISHRPALVAFH-DVVLSLD 385
++ + G + I ++H LV + D V+ LD
Sbjct: 172 KGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLD 213
|
Length = 235 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 79.0 bits (196), Expect = 9e-17
Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 55/195 (28%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSD 247
G ++++L+L +E G + I GPNG+GKS+L + L GL SG I G +
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE 70
Query: 248 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 307
L ++I YVPQ L+ + L +L DR
Sbjct: 71 LARKIAYVPQ---------------------------------ALELLGLAHLADRPF-- 95
Query: 308 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME------ERFCAKVRAM 361
+ELS GE+QR+ +AR +P +LDE TS + D+ E R
Sbjct: 96 ------NELSGGERQRVLLARALAQEPPILLLDEPTSHL--DIAHQIELLELLRRLARER 147
Query: 362 GTSCITISHRPALVA 376
G + + + H L A
Sbjct: 148 GKTVVMVLHDLNLAA 162
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 9e-17
Identities = 73/261 (27%), Positives = 114/261 (43%), Gaps = 44/261 (16%)
Query: 127 FQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSG 186
FQ LG I+S A RI+E+ E++ S + + +
Sbjct: 301 FQHLGQ-VIAS---------ARRINEITEQKPEVTFPTTSTAAADQVS-------LTLNN 343
Query: 187 VKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG 245
V P V + L+L+++ G + + G G GKS+L ++L W G I G
Sbjct: 344 VSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP 403
Query: 246 ------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKNVDL 297
+ L + I V QR + TLRD L+ P SD+ ++E+L+ V L
Sbjct: 404 IADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEA--------LIEVLQQVGL 455
Query: 298 EYLLDRYPPEKEIN-W----GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 352
E LL+ +K +N W G +LS GEQ+RLG+AR H +LDE T + + E
Sbjct: 456 EKLLED---DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETER 512
Query: 353 RFCAKVR--AMGTSCITISHR 371
+ + A + + I+HR
Sbjct: 513 QILELLAEHAQNKTVLMITHR 533
|
Length = 574 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 69/215 (32%), Positives = 103/215 (47%), Gaps = 17/215 (7%)
Query: 182 IEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
IEF V + P +++N++ ++PG + I G GSGKSSL L L L SG I
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62
Query: 241 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQL-IYPLTSDQEV-EPLTHGGMVELL 292
GV DL I +PQ P GT+R L + SD+E+ + L G+ E +
Sbjct: 63 IDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFV 122
Query: 293 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 352
++ L LD G+ LS+G++Q L +AR K K +LDE T++V + +
Sbjct: 123 ES--LPGGLD----TVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176
Query: 353 RFCAKVRAMGTSC--ITISHRPALVAFHDVVLSLD 385
+R C +TI+HR + D +L LD
Sbjct: 177 LIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLD 211
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 4e-16
Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 18/207 (8%)
Query: 192 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------ 245
+++ ++ ++ G L I GP+GSGKS+L R+L G+WP SG + G
Sbjct: 346 GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDR 405
Query: 246 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 305
L + I Y+PQ GT+ + I + + E ++E + + L+ R P
Sbjct: 406 EQLGRHIGYLPQDVELFDGTIA-ENIARFGEEADPE-----KVIEAARLAGVHELILRLP 459
Query: 306 PEKEINWGDE---LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME---ERFCAKVR 359
+ G+ LS G++QR+ +AR Y P +LDE S + ++ E +
Sbjct: 460 QGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK 519
Query: 360 AMGTSCITISHRPALVAFHDVVLSLDG 386
A G + + I+HRP+ +A D +L L
Sbjct: 520 ARGGTVVVIAHRPSALASVDKILVLQD 546
|
Length = 580 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 8e-16
Identities = 65/265 (24%), Positives = 102/265 (38%), Gaps = 47/265 (17%)
Query: 793 FVELSGGINRIFELEELLDA---AQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ 849
F L I L ++LD D++ + + Q ++ + P Q
Sbjct: 300 FQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQ----------ALELRNVSFTYPGQ 349
Query: 850 KLLARQ-LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEA 905
+ A + + G+ + + G +GSGKS++ ++L G W GS+T +DE+A
Sbjct: 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQA 409
Query: 906 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKT 965
I + QR + GTLRD + + + D L
Sbjct: 410 LRE-TISVLTQRVHLFSGTLRDNL----------------------RLANPDASDEELWA 446
Query: 966 ILEGVRLSYLLEREEVGWDANLNWED--ILSLGEQQRLGMARLFFHKPKFGILDECTNAT 1023
L+ V L LLE G + L E LS GE++RL +AR H +LDE T
Sbjct: 447 ALQQVGLEKLLESAPDGLNTWLG-EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGL 505
Query: 1024 SVDVEEQLYRL----AKDMGITFVT 1044
E Q+ L A+ + VT
Sbjct: 506 DPITERQVLALLFEHAEGKTLLMVT 530
|
Length = 573 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 8e-16
Identities = 59/204 (28%), Positives = 94/204 (46%), Gaps = 44/204 (21%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC-GIFYV 914
++FE+ PG+ + GPNG+GK+++ ++L GL SG + + +E I YV
Sbjct: 24 VSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83
Query: 915 PQRP--YTCLGTLRDQI-----IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTIL 967
PQ P Y L T+R+ + +Y LS+EEAE R E+L++ L+ +
Sbjct: 84 PQEPSLYPEL-TVRENLEFFARLYGLSKEEAEERI-------EELLELFG-LEDKANKKV 134
Query: 968 EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN----AT 1023
LS G +QRL +A H P+ ILDE T+ +
Sbjct: 135 RT-----------------------LSGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171
Query: 1024 SVDVEEQLYRLAKDMGITFVTSSQ 1047
++ E L LAK+ G+T + S+
Sbjct: 172 RREIWELLRELAKEGGVTILLSTH 195
|
Length = 293 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 8e-16
Identities = 66/203 (32%), Positives = 100/203 (49%), Gaps = 26/203 (12%)
Query: 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 239
N IEF V + G +++++++K E G+ I GP+G+GKS+L +++ L G I
Sbjct: 2 NEIEFKEVSY-SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 240 AKPGVGS------DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 293
GV DL ++I V Q+P+ GT++D + Y G M++ K
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEY-------------GPMLKGEK 107
Query: 294 NVDLEYLLDRYPPEKEINWGD--ELSLGEQQRLGMARLFYHKPKFAILDECTSAV----T 347
NVD+EY L KE D LS GE QR+ +AR + P+ +LDE TSA+ T
Sbjct: 108 NVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTST 167
Query: 348 TDMEERFCAKVRAMGTSCITISH 370
+EE M + I I+H
Sbjct: 168 EIIEELIVKLKNKMNLTVIWITH 190
|
Length = 241 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-15
Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 26/210 (12%)
Query: 192 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKPGVGSD- 247
P VL ++++ + PG + GP+GSGKS++ +L + G + KP +
Sbjct: 25 PDTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEH 83
Query: 248 --LNKEIFYVPQRPYTAVGTLRDQLIYPLT--SDQEVEPL-----THGGMVELLKNVDLE 298
L+ ++ V Q P +L+D + Y L S + V+ H + EL D E
Sbjct: 84 KYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTE 143
Query: 299 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV 358
EK G +LS G++QR+ +AR P+ ILDE TSA+ + E++ +
Sbjct: 144 V------GEK----GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQAL 193
Query: 359 RA--MGTSCITISHRPALVAFHDVVLSLDG 386
+ + I+HR + V D +L LDG
Sbjct: 194 YDWPERRTVLVIAHRLSTVERADQILVLDG 223
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 3e-15
Identities = 71/233 (30%), Positives = 99/233 (42%), Gaps = 57/233 (24%)
Query: 182 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP----L 234
+E + V T V +++ +VEPG L I G +GSGKS+L L GL P +
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 235 VSGHIAKPGVG-SDLN---------KEIFYVPQRPYTA---VGTLRDQLIYPLTSDQEVE 281
SG + G L+ K I + Q P T+ V T+ DQ+ E
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR-------EA- 117
Query: 282 PLTHGGM---------VELLKNVDLEY--LLDRYPPEKEINWGDELSLGEQQRLGMARLF 330
HG VELL+ V L DRYP +LS G +QR+ +A
Sbjct: 118 LRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPH--------QLSGGMRQRVMIAMAL 169
Query: 331 YHKPKFAILDECTSA--VTT-----DMEERFCAKVRAMGTSCITISHRPALVA 376
KPK I DE T+A VTT D+ + R +G + + I+H +VA
Sbjct: 170 ALKPKLLIADEPTTALDVTTQAQILDLLKDLQ---RELGMAVLFITHDLGVVA 219
|
Length = 539 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 3e-15
Identities = 54/212 (25%), Positives = 89/212 (41%), Gaps = 43/212 (20%)
Query: 193 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEI 252
+ ++++ L+V G + I GP GSGKSSL L G +SG ++ + I
Sbjct: 16 ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVS-------VPGSI 68
Query: 253 FYVPQRPYTAVGTLRDQLIYPLTSDQE--------------VEPLTHGGMVELLKNVDLE 298
YV Q P+ GT+R+ +++ D+E +E L G + E+
Sbjct: 69 AYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEI------- 121
Query: 299 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV 358
EK IN LS G++QR+ +AR Y +LD+ SAV +
Sbjct: 122 -------GEKGIN----LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENC 170
Query: 359 ----RAMGTSCITISHRPALVAFHDVVLSLDG 386
+ I ++H+ L+ D ++ LD
Sbjct: 171 ILGLLLNNKTRILVTHQLQLLPHADQIVVLDN 202
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 4e-15
Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 21/217 (9%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
IEF V G ++++++ + G + I GP+GSGKS++ R+L + + SG I
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 242 PGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLK 293
G L + I VPQ T+ + Y P +D+EV E K
Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVI--------EAAK 112
Query: 294 NVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 350
+ + R+P + G+ +LS GE+QR+ +AR P +LDE TSA+ T
Sbjct: 113 AAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172
Query: 351 EERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 385
E A +R + G + I I+HR + + D ++ L
Sbjct: 173 EREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLK 209
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 8e-15
Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 35/227 (15%)
Query: 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 895
S+ FS + + P ++ R ++F + PG+ + + GP+G+GKS++ +L G GS+
Sbjct: 321 SLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380
Query: 896 ---KPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQI-IYPLSREEAEL-RALKLHGKGE 950
P D I +VPQ P+ GT+ + I + +AE+ AL+ G
Sbjct: 381 VNGVPLADAD-ADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAG--- 436
Query: 951 KLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHK 1010
LD ++ + +G L + G LS G+ QRL +AR F
Sbjct: 437 --------LDEFVAALPQG--LDTPIGEGGAG----------LSGGQAQRLALARAFLRD 476
Query: 1011 PKFGILDECT----NATSVDVEEQLYRLAKDMGITFVTSSQRPALIP 1053
+LDE T T +V E L LA+ G T + + R AL
Sbjct: 477 APLLLLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTHRLALAA 521
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 19/203 (9%)
Query: 182 IEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 239
IEF V P+ +++ L+L + PG + + G +G GKS++ +L + SG I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 240 AKPGVG-SDLN-----KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 293
GV DLN +I V Q P GT+ + + Y + E + E K
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEE------VEEAAK 114
Query: 294 NVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 350
++ + P + G+ +LS G++QR+ +AR PK +LDE TSA+ +
Sbjct: 115 KANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174
Query: 351 EERFCAKV-RAM-GTSCITISHR 371
E+ + RAM G + I I+HR
Sbjct: 175 EKLVQEALDRAMKGRTTIVIAHR 197
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 28/177 (15%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 253
G VL L+ + G L++TGPNGSGK++L R++ GL P +G I G D
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD--- 70
Query: 254 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPL--------THGGMV-ELLKNVDLEYLLDRY 304
Y +G R+ + LT E L + L+ V L L
Sbjct: 71 VAEACHY--LGH-RNAMKPALTV---AENLEFWAAFLGGEELDIAAALEAVGLAPLAHL- 123
Query: 305 PPEKEINWGDELSLGEQQRLGMARLF-YHKPKFAILDECTSAVTTDMEERFCAKVRA 360
P LS G+++R+ +ARL ++P + ILDE T+A+ F +RA
Sbjct: 124 -PFG------YLSAGQKRRVALARLLVSNRPIW-ILDEPTAALDAAAVALFAELIRA 172
|
Length = 207 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 35/198 (17%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 253
+++L+L VEPG L + GP+G GK++L R++ GL SG I G +++
Sbjct: 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDG------RDVT 65
Query: 254 YVP--QRPYTAVG------------TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 299
VP +R +G T+ + + + L + + ELL+ V LE
Sbjct: 66 GVPPERRN---IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG 122
Query: 300 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 359
LL+RYP ELS G+QQR+ +AR +P +LDE SA+ + E +++
Sbjct: 123 LLNRYP--------HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELK 174
Query: 360 AM----GTSCITISHRPA 373
+ G + I ++H
Sbjct: 175 ELQRELGITTIYVTHDQE 192
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 2e-14
Identities = 57/217 (26%), Positives = 102/217 (47%), Gaps = 18/217 (8%)
Query: 182 IEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
I F V+ P G V+++N++L+++PG + I G +GSGKS+L +++ + +G +
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 241 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQ--LIYPLTSDQEVEPLTH-GGMVEL 291
G + L +++ V Q ++RD L P S + V G +
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120
Query: 292 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 351
+ + Y D E+ G LS G++QR+ +AR H P+ I DE TSA+ + E
Sbjct: 121 ISELPEGY--DTIVGEQ----GAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 352 ERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 386
+ + G + I I+HR + V D ++ ++
Sbjct: 175 HAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEK 211
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 3e-14
Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 33/175 (18%)
Query: 182 IEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 238
+E V G +E+++L VE G + + GP+G GKS+L R++ GL SG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 239 IA---KPGVGSDLNKEIFYVPQRPY-----TAVGTLRDQLIYPLT----SDQEVEPLTHG 286
+ +P G + YV Q+ T D + L E
Sbjct: 61 VLVDGEPVTGP--GPDRGYVFQQDALLPWLTV----LDNVALGLELQGVPKAEARERAE- 113
Query: 287 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
ELL+ V L + YP +LS G +QR+ +AR P +LDE
Sbjct: 114 ---ELLELVGLSGFENAYP--------HQLSGGMRQRVALARALAVDPDVLLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 5e-14
Identities = 73/269 (27%), Positives = 118/269 (43%), Gaps = 38/269 (14%)
Query: 145 GYADRIHELMVISRELSIEDKSPQ--RNGSRNYFSEANYIEFSGVKVVTPT-GNVLV-EN 200
G ++++ E + D+ P G+ + IEF V P +V V +
Sbjct: 449 GASEKVFEYL---------DRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKG 499
Query: 201 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKPGVGSD---LNKEIFY 254
LT + PG + + GP+GSGKS++ +L L+ G + P V D L++++
Sbjct: 500 LTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVAL 559
Query: 255 VPQRPYTAVGTLRDQLIYPLTS--DQEV-----EPLTHGGMVELLKNVDLEYLLDRYPPE 307
V Q P G++R+ + Y LT D+E+ H ++E D E E
Sbjct: 560 VGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEV------GE 613
Query: 308 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCIT 367
K G +LS G++QR+ +AR KP+ ILDE TSA+ + E+ + +
Sbjct: 614 K----GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLL 669
Query: 368 ISHRPALV--AFHDVVLSLDGEGEWRVHD 394
I+HR + V A +VL E H
Sbjct: 670 IAHRLSTVERADQILVLKKGSVVEMGTHK 698
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 6e-14
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 35/194 (18%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VS 236
IE + V + L ++++L + G + GP+G GKS+L R+L L L
Sbjct: 1 IELRDLNVYYGDKHAL-KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59
Query: 237 GHI--------AKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT-----SDQEVEPL 283
G + +L + + V Q+P G++ D + Y L +E++
Sbjct: 60 GEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDER 119
Query: 284 THGGMVELLKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 342
+ E L+ L + + DR LS G+QQRL +AR ++P+ +LDE
Sbjct: 120 ----VEEALRKAALWDEVKDRLH-------ALGLSGGQQQRLCLARALANEPEVLLLDEP 168
Query: 343 TSAV----TTDMEE 352
TSA+ T +EE
Sbjct: 169 TSALDPISTAKIEE 182
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 9e-14
Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 41/229 (17%)
Query: 837 ISFSKLDIITP-SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 895
+S + I+ P +K R ++F + G++L + GP+GSGKS++ R++ G+WP SGS+
Sbjct: 317 LSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376
Query: 896 KPSQHID----EEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEK 951
+ E G G Y+PQ GT+ + I +R K
Sbjct: 377 LDGADLKQWDRETFGKHIG--YLPQDVELFPGTVAENI----ARFGENADPEK------- 423
Query: 952 LVDTTNILDSYLKTILEGVRLS---YLLEREEVGWDANLNWEDI-LSLGEQQRLGMARLF 1007
I+E +L+ L+ R G+D + LS G++QR+ +AR
Sbjct: 424 --------------IIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARAL 469
Query: 1008 FHKPKFGILDECTNATSVDVEEQ-LYRL---AKDMGITFVTSSQRPALI 1052
+ PK +LDE N+ + EQ L K GIT V + RP+L+
Sbjct: 470 YGDPKLVVLDE-PNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL 517
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 9e-14
Identities = 55/188 (29%), Positives = 81/188 (43%), Gaps = 38/188 (20%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPG-SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
++ + L ++L + PG LL GPNG+GK++L R+L L P SG I
Sbjct: 1 LQLENLTKRYGKKRALD-GVSLTLGPGMYGLL--GPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 241 KPGV-----GSDLNKEIFYVPQ--RPYTAVGTLRDQLIY--------PLTSDQEVEPLTH 285
G L + I Y+PQ Y T+R+ L Y V+
Sbjct: 58 IDGQDVLKQPQKLRRRIGYLPQEFGVYPNF-TVREFLDYIAWLKGIPSKEVKARVD---- 112
Query: 286 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
E+L+ V+L DR +K+I LS G ++R+G+A+ P I+DE T
Sbjct: 113 ----EVLELVNLG---DRA--KKKIG---SLSGGMRRRVGIAQALVGDPSILIVDEPT-- 158
Query: 346 VTTDMEER 353
D EER
Sbjct: 159 AGLDPEER 166
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 61/224 (27%), Positives = 102/224 (45%), Gaps = 34/224 (15%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
IEF V P G + +++L + G L +TGP+G+GK++L ++L G G +
Sbjct: 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61
Query: 242 PGVGSDLN----KEIFYVPQRPYTAVGT-------LRDQLIY-----PLTSDQEVEPLTH 285
G D+N +++ + +R +G L D+ +Y PL + E
Sbjct: 62 --AGEDVNRLRGRQLPLLRRR----IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQ 115
Query: 286 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
+ L+ V LE+ D +P ++LS GEQQR+ +AR + P + DE T
Sbjct: 116 RRVGAALRQVGLEHKADAFP--------EQLSGGEQQRVAIARAIVNSPPLLLADEPTGN 167
Query: 346 VTTDMEERFCA---KVRAMGTSCITISHRPALV-AFHDVVLSLD 385
+ D+ ER ++ GT+ I +H +LV V+ LD
Sbjct: 168 LDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILD 211
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 29/212 (13%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-- 239
I F V P G + +++ + G + +TGP+G+GKS+L +++ G G I
Sbjct: 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV 61
Query: 240 AKPGVGSDLNKEIFYVPQRPYTAVGTL-RD-QLIYPLTSDQEVE-PLTHGGM-------- 288
+ +EI ++ ++ +G + +D +L+ T + V PL G
Sbjct: 62 NGHDLSRLKGREIPFLRRQ----IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRR 117
Query: 289 -VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 347
E+L V L++ P +LS GEQQR+ +AR ++P + DE T +
Sbjct: 118 VSEVLDLVGLKHKARALP--------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLD 169
Query: 348 TDMEE---RFCAKVRAMGTSCITISHRPALVA 376
D+ R ++ +GT+ + +H LV
Sbjct: 170 PDLSWEIMRLFEEINRLGTTVLMATHDLELVN 201
|
Length = 223 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 1e-13
Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 182 IEFSGVKVVTPTGN----VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 237
IE V +++++L++ G I G +G+GKS+L R++ L SG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 238 HIAKPGVGSD---------LNKEIFYVPQRP-YTAVGTLRDQLIYPL----TSDQEVEPL 283
+ G L ++I + Q + T+ + + +PL E++
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 284 THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 343
ELL+ V L DRYP +LS G++QR+ +AR + PK + DE T
Sbjct: 122 VA----ELLELVGLSDKADRYP--------AQLSGGQKQRVAIARALANNPKILLCDEAT 169
Query: 344 SA 345
SA
Sbjct: 170 SA 171
|
Length = 339 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 42/187 (22%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC------ 909
+ F I PG+++ + GP G+GK+++ +L + G + ID
Sbjct: 22 INFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL-----IDGIDIRDISRKSLR 76
Query: 910 -GIFYVPQRPYTCLGTLRDQIIY--PLSREEAELRALKLHGKGEKLVDTTNILDSYLKTI 966
I V Q + GT+ + I P + +E + A K
Sbjct: 77 SMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKE--------------------- 115
Query: 967 LEGVRLSYLLEREEVGWDANLNWE-DILSLGEQQRLGMARLFFHKPKFGILDECTNATSV 1025
+ + G+D L LS GE+Q L +AR PK ILDE T +++
Sbjct: 116 ---AGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEAT--SNI 170
Query: 1026 DVE-EQL 1031
D E E+L
Sbjct: 171 DTETEKL 177
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-13
Identities = 55/192 (28%), Positives = 84/192 (43%), Gaps = 31/192 (16%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD-----L 248
G L L+ + G L +TGPNGSGK++L R+L GL P ++G + G D +
Sbjct: 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSI 71
Query: 249 NKEIFYVPQRP-----YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 303
+ + Y+ P + + LR + SD++VE E L V L DR
Sbjct: 72 ARGLLYLGHAPGIKTTLSVLENLR--FWHADHSDEQVE--------EALARVGLNGFEDR 121
Query: 304 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---A 360
+LS G+Q+R+ +ARL ILDE T+A+ RF + A
Sbjct: 122 P--------VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA 173
Query: 361 MGTSCITISHRP 372
G + +H+
Sbjct: 174 RGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 3e-13
Identities = 67/226 (29%), Positives = 94/226 (41%), Gaps = 52/226 (23%)
Query: 187 VKVVTPTGNV-LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV- 244
V T G V V+ ++ +++ G L I G +GSGKS L + + GL P + I +
Sbjct: 9 VSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEIL 68
Query: 245 --GSDLN------------KEIFYVPQRPYTA---VGTLRDQLIYPLTSDQEVEPLTHGG 287
G DL KEI + Q P T+ V T+ DQ+ L HG
Sbjct: 69 FDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVL--------RLHGK 120
Query: 288 M----------VELLKNVDL---EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 334
+ELL+ V + E L YP ELS G +QR+ +A P
Sbjct: 121 GLSKKEAKERAIELLELVGIPDPERRLKSYP--------HELSGGMRQRVMIAMALALNP 172
Query: 335 KFAILDECTSA--VTT--DMEERFCAKVRAMGTSCITISHRPALVA 376
K I DE T+A VT + + R GT+ I I+H +VA
Sbjct: 173 KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVA 218
|
Length = 316 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 3e-13
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 22/204 (10%)
Query: 182 IEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
+EF V G ++ +++L + G + + GP+GSGKS+L ++ + + SG I
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 241 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELL 292
G + L ++I V Q + T+ + + Y P + +EVE E
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVE--------EAA 112
Query: 293 KNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 349
+ + + P + G+ +LS G++QR+ +AR P ILDE TSA+ T+
Sbjct: 113 RAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTE 172
Query: 350 MEERFCAKVRAM--GTSCITISHR 371
E A + + + I+HR
Sbjct: 173 SERLVQAALERLMKNRTTFVIAHR 196
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 4e-13
Identities = 65/228 (28%), Positives = 92/228 (40%), Gaps = 46/228 (20%)
Query: 177 SEANYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW 232
N IE + G ++L + + L V+ G + I GP+GSGKS+L VL GL
Sbjct: 2 PAENIIEVHHLSKTVGQGEGELSIL-KGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD 60
Query: 233 PLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRD----------QLIYPLTSDQEVE- 281
SG + +G L+ + A LR LI LT+ + V
Sbjct: 61 DPSSGEVRL--LGQPLH-------KLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL 111
Query: 282 PLTHGGMV---------ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 332
PL G LL+ V L L YP +LS GEQQR+ +AR F
Sbjct: 112 PLELRGESSADSRAGAKALLEAVGLGKRLTHYP--------AQLSGGEQQRVALARAFAG 163
Query: 333 KPKFAILDECTSAVTTDMEERFC----AKVRAMGTSCITISHRPALVA 376
+P DE T + ++ A R GT+ + ++H P L A
Sbjct: 164 RPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAA 211
|
Length = 228 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 5e-13
Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 40/206 (19%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913
+ ++ +I G+ + GP+G GKS++ R+L L ++ G + + +
Sbjct: 17 KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPG--APDEGEVLLDGKDIYDLDV 74
Query: 914 VP-----------QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSY 962
Q+P G++ D + Y L +LHG K LD
Sbjct: 75 DVLELRRRVGMVFQKPNPFPGSIYDNVAYGL----------RLHGIKLK-----EELDER 119
Query: 963 LKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA 1022
++ L L +EV L+ LS G+QQRL +AR ++P+ +LDE T+A
Sbjct: 120 VEEALRKAALW-----DEV--KDRLHALG-LSGGQQQRLCLARALANEPEVLLLDEPTSA 171
Query: 1023 ----TSVDVEEQLYRLAKDMGITFVT 1044
++ +EE + L K+ I VT
Sbjct: 172 LDPISTAKIEELIAELKKEYTIVIVT 197
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 5e-13
Identities = 68/264 (25%), Positives = 122/264 (46%), Gaps = 20/264 (7%)
Query: 120 TSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEA 179
S++ S + + L L L G +R+ +++ + +E++ GS +
Sbjct: 416 QSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLS 475
Query: 180 NYIEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 238
Y+E + +P L+EN +L ++PG + + G +GSGKS++ +++ GL+ SG
Sbjct: 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535
Query: 239 IAKPGVG-SDLNKEIF-----YVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVE 290
I G+ ++ +E+ V Q + GT+RD L P D + +V
Sbjct: 536 ILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDAD--------LVR 587
Query: 291 LLKNVDLEYLLDRYPPEKE---INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 347
K+ + ++ P + G LS G++QRL +AR P ILDE TSA+
Sbjct: 588 ACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALD 647
Query: 348 TDMEERFCAKVRAMGTSCITISHR 371
+ E+ +R G +CI ++HR
Sbjct: 648 PETEKIIDDNLRRRGCTCIIVAHR 671
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 5e-13
Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 55/183 (30%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV-----GSDLNKEI 252
+++++L VE G + GPNG+GK++L +++ GL SG I G ++ + I
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRI 75
Query: 253 FYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINW 312
Y+P+ P L LT V E L
Sbjct: 76 GYLPEEPS---------LYENLT----VR----------------ENL------------ 94
Query: 313 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER-----FCAKVRAMGTSCIT 367
+LS G +QRL +A+ H P+ ILDE TS + D E R +++ G + +
Sbjct: 95 --KLSGGMKQRLALAQALLHDPELLILDEPTSGL--DPESRREFWELLRELKKEGKTILL 150
Query: 368 ISH 370
SH
Sbjct: 151 SSH 153
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 6e-13
Identities = 51/166 (30%), Positives = 73/166 (43%), Gaps = 19/166 (11%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
+E GV VL E++ L VE G + I GP+G GKS+L R++ GL SG +
Sbjct: 4 LEIEGVSKSFGGVEVL-EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLL 62
Query: 242 PG-VGSDLNKEIFYVPQRPY-----TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 295
G + +I YV Q T D + L + + ELL+ V
Sbjct: 63 DGRPVTGPGPDIGYVFQEDALLPWLTV----LDNVALGLELRGKSKAEARERAKELLELV 118
Query: 296 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
L D+YP +LS G +QR+ +AR +PK +LDE
Sbjct: 119 GLAGFEDKYP--------HQLSGGMRQRVAIARALATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 6e-13
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 32/197 (16%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKE 251
++N++ KV+ G + I G G+GKS+L L G I G+ DL
Sbjct: 24 LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83
Query: 252 IFYVPQRPYTAVGTLRDQL-IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI 310
+ +PQ P GT+R L + SD+E+ Y +
Sbjct: 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEI-----------------------YGALRVS 120
Query: 311 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITI 368
G LS G++Q L +AR +P+ +LDE T+++ + +R ++ +TI
Sbjct: 121 EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTI 180
Query: 369 SHRPALVAFHDVVLSLD 385
+HR + +D +L +D
Sbjct: 181 AHRLRTIIDYDKILVMD 197
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 7e-13
Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 38/211 (18%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
+E V+ + VL +++ L +E G +++ GP+G GKS+L R++ GL SG I
Sbjct: 4 LELKNVRKSFGSFEVL-KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILI 62
Query: 242 PG-VGSDLNKE---IFYVPQRPYTAV---GTLRDQLIYPLTS--------DQEVEPLTHG 286
G +DL E I V Q A+ T+ + + + L D+ V+
Sbjct: 63 DGRDVTDLPPEKRGIAMVFQNY--ALYPHMTVYENIAFGLKLRGVPKAEIDKRVK----- 115
Query: 287 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 346
E+ K + LE+LL+R P +LS G++QR+ +AR KPK +LDE S +
Sbjct: 116 ---EVAKLLGLEHLLNRKP--------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNL 164
Query: 347 ----TTDMEERFCAKVRAMGTSCITISHRPA 373
M +GT+ I ++H
Sbjct: 165 DAKLRVLMRSEIKKLHERLGTTTIYVTHDQV 195
|
Length = 338 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 9e-13
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 57/185 (30%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 257
V+ ++ ++ G L + G +G GKS+L R++ GL SG I
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI------------------ 70
Query: 258 RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL-EYLLDRYPPEKEINWGDEL 316
+ I L+ ++ E + +ELL+ V L E L RYP EL
Sbjct: 71 -------LFEGKDITKLSKEERRERV-----LELLEKVGLPEEFLYRYP--------HEL 110
Query: 317 SLGEQQRLGMARLFYHKPKFAILDECTSAVTT-----------DMEERFCAKVRAMGTSC 365
S G++QR+G+AR PK + DE SA+ D++E G +
Sbjct: 111 SGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL-------GLTY 163
Query: 366 ITISH 370
+ ISH
Sbjct: 164 LFISH 168
|
Length = 268 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-12
Identities = 64/230 (27%), Positives = 105/230 (45%), Gaps = 43/230 (18%)
Query: 837 ISFSKLDIITP-SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 895
+S +L P +K + + ++F + G++L + GP+GSGKS++ R+L G+WP SGS+
Sbjct: 335 LSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR 394
Query: 896 KPSQHID----EEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEK 951
+ E+ G G Y+PQ GT+ + I +R E K
Sbjct: 395 LDGADLRQWDREQLGRHIG--YLPQDVELFDGTIAENI----ARFGEEADPEK------- 441
Query: 952 LVDTTNILDSYLKTILEGVRLS---YLLEREEVGWDANLNWEDI-LSLGEQQRLGMARLF 1007
++E RL+ L+ R G+D + LS G++QR+ +AR
Sbjct: 442 --------------VIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARAL 487
Query: 1008 FHKPKFGILDECTNATSVDVE-EQ-LYRL---AKDMGITFVTSSQRPALI 1052
+ P +LDE N+ ++D E E L AK G T V + RP+ +
Sbjct: 488 YGDPFLVVLDE-PNS-NLDSEGEAALAAAILAAKARGGTVVVIAHRPSAL 535
|
Length = 580 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-12
Identities = 81/274 (29%), Positives = 125/274 (45%), Gaps = 32/274 (11%)
Query: 129 SLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVK 188
S+GTLS L R +G A+R+ EL+ E I+ + + E IEF V
Sbjct: 290 SIGTLSEVWGELQRAAGAAERLIELL--QAEPDIKAPAHPKTLPVPLRGE---IEFEQVN 344
Query: 189 VVTPT-GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG- 245
P + + L L V PG + + GP+G+GKS+LF++L + SG I GV
Sbjct: 345 FAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL 404
Query: 246 -----SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVE-----PLTHGGMVELLK 293
++L + VPQ P ++ + + Y P +D+EVE H + L +
Sbjct: 405 RQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPE 464
Query: 294 NVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 353
D YL +R G LS G++QR+ +AR +LDE TSA+ + E+
Sbjct: 465 GYD-TYLGER---------GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQL 514
Query: 354 F-CAKVRAM-GTSCITISHRPALVAFHDVVLSLD 385
A M G + + I+HR A V D ++ +D
Sbjct: 515 VQQALETLMKGRTTLIIAHRLATVLKADRIVVMD 548
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 2e-12
Identities = 85/405 (20%), Positives = 162/405 (40%), Gaps = 53/405 (13%)
Query: 1 MMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH 60
+MR S ++ + Q G+ + + +GG+ E ++F A++
Sbjct: 170 LMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYE----TRRFDAVSNR 225
Query: 61 -----MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSN 115
M++ + Q L+ L +AV+L I F A + T G +
Sbjct: 226 NRRLAMKMTSAGSISSPITQ--LIASLA--LAVVLFIALFQAQA---GSLTAG------D 272
Query: 116 LRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNY 175
+ +I+L + L +L+ + + R A+ + L+ E ++ +R
Sbjct: 273 FTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGD-- 330
Query: 176 FSEANYIEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL 234
+EF V P +++++L +EPG + + G +GSGKS+L ++ +
Sbjct: 331 ------VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP 384
Query: 235 VSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLT---SDQEVEPLTH 285
SG I G + L +++ V Q T+ + + Y T E+E
Sbjct: 385 DSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIE---- 440
Query: 286 GGMVELLKNVDLEYLLDRYPPEKEINWGDE---LSLGEQQRLGMARLFYHKPKFAILDEC 342
L + +D+ P + G+ LS G++QRL +AR ILDE
Sbjct: 441 ----RALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEA 496
Query: 343 TSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 385
TSA+ + E A + + G + + I+HR + + D ++ +D
Sbjct: 497 TSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMD 541
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 2e-12
Identities = 53/213 (24%), Positives = 94/213 (44%), Gaps = 37/213 (17%)
Query: 177 SEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 236
+E V + V++++L ++ G + + GP+G GK++L R++ G S
Sbjct: 1 MPKPALEIRNVSK-SFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 237 GHIAKPGVGSDLNKEIFYVP--QRPYTAVG------------TLRDQLIYPLTSDQEVEP 282
G I G ++I VP +RP +G T+ + + + L ++++
Sbjct: 60 GEILLDG------EDITDVPPEKRP---IGMVFQSYALFPHMTVEENVAFGLKVRKKLKK 110
Query: 283 LTHGGMV-ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
V E L+ V LE DR P +LS G+QQR+ +AR +PK +LDE
Sbjct: 111 AEIKARVEEALELVGLEGFADRKP--------HQLSGGQQQRVALARALVPEPKVLLLDE 162
Query: 342 CTSA----VTTDMEERFCAKVRAMGTSCITISH 370
SA + M + R +G + + ++H
Sbjct: 163 PLSALDAKLREQMRKELKELQRELGITFVYVTH 195
|
Length = 352 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 2e-12
Identities = 68/274 (24%), Positives = 118/274 (43%), Gaps = 33/274 (12%)
Query: 123 IISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANY- 181
II+L L +++ RLN E+ ++ E R + N
Sbjct: 431 IINLQPKLQAARVANNRLN----------EVYLVDSEFI-------NKKKRTELNNLNGD 473
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
I + V G+ ++ +++L ++ S I G +GSGKS+L ++L G + SG I
Sbjct: 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533
Query: 242 PGVGSD------LNKEIFYVPQRPYTAVGTLRDQLIY---PLTSDQEVEPLTHGGMVELL 292
G L + I Y+PQ PY G++ + L+ S E+ + E+
Sbjct: 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACE--IAEIK 591
Query: 293 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 352
D+E + Y E G +S G++QR+ +AR K ILDE TS + T E+
Sbjct: 592 D--DIENMPLGYQTELSEE-GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEK 648
Query: 353 RFCAKVRAMG-TSCITISHRPALVAFHDVVLSLD 385
+ + + + I ++HR ++ D ++ LD
Sbjct: 649 KIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLD 682
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 2e-12
Identities = 46/177 (25%), Positives = 70/177 (39%), Gaps = 26/177 (14%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-----VGSDL 248
+L E L+ + G L +TGPNG GK++L R+L GL SG + G +
Sbjct: 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEP 71
Query: 249 NKEIFYVPQRP-----YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 303
++ I Y+ P +A+ L + + V L E L
Sbjct: 72 HRNILYLGHLPGLKPELSALENL--HFWAAIHGGAQRTIEDALAAVGLT---GFEDLPAA 126
Query: 304 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 360
LS G+Q+RL +ARL+ + ILDE T+A+ +RA
Sbjct: 127 Q-----------LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRA 172
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 3e-12
Identities = 60/204 (29%), Positives = 89/204 (43%), Gaps = 47/204 (23%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915
++FE+ PG+ L + GPNG+GKS++ + + GL SGS+ + +++E I YVP
Sbjct: 18 VSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKR---IGYVP 74
Query: 916 QRPYTCLGTLRDQIIYPLSREE-------AELRALKLHGKGEK-LVDTTNILDSYLKTIL 967
QR RD +P+S + + K +K VD L
Sbjct: 75 QR----RSIDRD---FPISVRDVVLMGLYGHKGLFRRLSKADKAKVD----------EAL 117
Query: 968 EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDV 1027
E V LS L +R + LS G+QQR+ +AR P +LDE VD
Sbjct: 118 ERVGLSELADR-------QI---GELSGGQQQRVLLARALVQDPDLLLLDEPF--AGVDP 165
Query: 1028 --EEQLYRL-----AKDMGITFVT 1044
+E +Y L + M I VT
Sbjct: 166 KTQEDIYELLRELRREGMTILVVT 189
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 3e-12
Identities = 53/195 (27%), Positives = 77/195 (39%), Gaps = 29/195 (14%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV--------- 244
G V + L + G +I G +GSGKS+ R+L L +G I G
Sbjct: 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVE 64
Query: 245 -GSDLNKEIFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 299
K+I V Q+ P+ T+ E +ELLK V LE
Sbjct: 65 LREVRRKKIGMVFQQFALFPHM---TILQNTSLGPELLGWPEQERKEKALELLKLVGLEE 121
Query: 300 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA----VTTDMEERFC 355
RYP DELS G QQR+G+AR +P ++DE SA + M++
Sbjct: 122 YEHRYP--------DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELK 173
Query: 356 AKVRAMGTSCITISH 370
+ + + I+H
Sbjct: 174 KLQATLQKTIVFITH 188
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 38/188 (20%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-- 239
IE + P G+ ++++ L++ G + I GP+G+GKS+L R L GL SG I
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILF 63
Query: 240 ----AKPGVGSDLNKE------IFYVP-----QRPYTAVGTLRD------QLIYPLTSDQ 278
G +L K IF V R + ++ L S +
Sbjct: 64 NGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE 123
Query: 279 EVEPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 337
+ ++ L+ V L+ R LS G+QQR+ +AR +PK
Sbjct: 124 DKA-----QALDALERVGILDKAYQR---------ASTLSGGQQQRVAIARALVQQPKII 169
Query: 338 ILDECTSA 345
+ DE ++
Sbjct: 170 LADEPVAS 177
|
Length = 258 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 4e-12
Identities = 58/243 (23%), Positives = 105/243 (43%), Gaps = 34/243 (13%)
Query: 145 GYADRIHELMVISRELSIEDKSPQRNGSRNYFSE-ANYIEFSGVKVVTPTGNVLVENLTL 203
G A+ + + + + G + S IE +++++P G L L
Sbjct: 319 GAAESLVTFLE-------TPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNF 371
Query: 204 KVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLN-----KEIFYVPQ 257
+ G + + GP+G+GK+SL L G P G + G+ +L+ K + +V Q
Sbjct: 372 TLPAGQRIALVGPSGAGKTSLLNALLGFLPY-QGSLKINGIELRELDPESWRKHLSWVGQ 430
Query: 258 RPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP-----PEKEI 310
P GTLRD ++ P SD++++ + L+N + L P P +
Sbjct: 431 NPQLPHGTLRDNVLLGNPDASDEQLQ--------QALENAWVSEFLPLLPQGLDTPIGDQ 482
Query: 311 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFC-AKVRAM-GTSCITI 368
G LS+G+ QRL +AR + +LDE T+++ E+ A A + + +
Sbjct: 483 AAG--LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMV 540
Query: 369 SHR 371
+H+
Sbjct: 541 THQ 543
|
Length = 588 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 5e-12
Identities = 63/219 (28%), Positives = 91/219 (41%), Gaps = 44/219 (20%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIF 912
++ I PG+ + + G GSGKS++ ++L GL+ GS+ + ID I
Sbjct: 484 VSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR-NIG 542
Query: 913 YVPQRPYTCLGTLRDQIIY--PLSREEAELRALKLHGKGEKLVDTTNIL-DSYLKTILEG 969
YVPQ P GTLRD I P + +E LRA +L G + + D I E
Sbjct: 543 YVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAG----VTEFVRRHPDGLDMQIGER 598
Query: 970 VRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEE 1029
R LS G++Q + +AR P +LDE T+A EE
Sbjct: 599 GRS--------------------LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEE 638
Query: 1030 Q----LYRLAKDMGITFVTSSQRPALIPFHSLEL--RLI 1062
+ L R T V + R +L L+L R+I
Sbjct: 639 RFKDRLKRWLAGK--TLVLVTHRTSL-----LDLVDRII 670
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 5e-12
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 18/179 (10%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
IE + P G +++++L + PG + + GP+G+GKS+L R L GL SG +
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 242 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHG---------GMVEL 291
G D+NK ++ +G + Q + L V E + G + L
Sbjct: 61 DGT--DINKLKGKALRQLRRQIGMIFQQ--FNLIERLSVLENVLSGRLGRRSTWRSLFGL 116
Query: 292 LKNVDLE---YLLDRYP-PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 346
+ + L+R +K D+LS G+QQR+ +AR +PK + DE +++
Sbjct: 117 FPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASL 175
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 7e-12
Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 20/131 (15%)
Query: 222 SSLFRVLGGLWPLVSG-------HIAKPGVGSDLNKEIFYVPQRPYTAVG-TLRDQLIYP 273
S+L +++ GL SG L K I V Q P T+R+ L +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 274 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 333
L + E L+ V L LDR P LS G++QR+ +AR K
Sbjct: 61 LRDKEADAR-----AEEALERVGLPDFLDREPV-------GTLSGGQKQRVAIARALLKK 108
Query: 334 PKFAILDECTS 344
PK +LDE T+
Sbjct: 109 PKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 9e-12
Identities = 65/257 (25%), Positives = 106/257 (41%), Gaps = 52/257 (20%)
Query: 802 RIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLA-RQLTFEI 860
RI E+ E +P E++ + + Q S++ + + P Q + L+ +I
Sbjct: 313 RINEITE----QKP---EVTFPTTSTAAAD--QVSLTLNNVSFTYPDQPQPVLKGLSLQI 363
Query: 861 VPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIFYVPQR 917
G+ + + G G GKS++ ++L W G + +P E A I V QR
Sbjct: 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA-ISVVSQR 422
Query: 918 PYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLE 977
+ TLRD ++ L+ A D L +L+ V L LLE
Sbjct: 423 VHLFSATLRDNLL--LAAPNAS--------------------DEALIEVLQQVGLEKLLE 460
Query: 978 REEVGWDANLNWEDI------LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQL 1031
++ G +A W + LS GEQ+RLG+AR H +LDE T + E Q+
Sbjct: 461 DDK-GLNA---W--LGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQI 514
Query: 1032 YRL----AKDMGITFVT 1044
L A++ + +T
Sbjct: 515 LELLAEHAQNKTVLMIT 531
|
Length = 574 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 1e-11
Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 35/207 (16%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCG--I 911
++ I G+ +L+ GPNGSGKS++ R+L GL SG + + + + + +
Sbjct: 18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKV 77
Query: 912 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR 971
V Q P DQ P EE L+ G E+ ++ ++ LE V
Sbjct: 78 GLVFQNP-------DDQFFGPTVEEEVAF-GLENLGLPEEEIEER------VEEALELVG 123
Query: 972 LSYLLEREEVGWDANLNWEDI--LSLGEQQRLGMARLFFHKPKFGILDECTN----ATSV 1025
L L +R LS G++QR+ +A + P +LDE T A
Sbjct: 124 LEGLRDR------------SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRR 171
Query: 1026 DVEEQLYRLAKDMGITFVTSSQRPALI 1052
++ E L +L K G T + + L+
Sbjct: 172 ELLELLKKL-KAEGKTIIIVTHDLDLL 197
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 1e-11
Identities = 48/201 (23%), Positives = 82/201 (40%), Gaps = 61/201 (30%)
Query: 849 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSG 908
+ + L+ I G+ + + GPNG+GKS++ + L GL SG +
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL------------- 57
Query: 909 CGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 968
L + + LS +E A K+ +Y+ LE
Sbjct: 58 ----------------LDGKDLASLSPKE---LARKI---------------AYVPQALE 83
Query: 969 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA----TS 1024
+ L++L +R + + LS GE+QR+ +AR +P +LDE T+
Sbjct: 84 LLGLAHLADR---------PFNE-LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQ 133
Query: 1025 VDVEEQLYRLAKDMGITFVTS 1045
+++ E L RLA++ G T V
Sbjct: 134 IELLELLRRLARERGKTVVMV 154
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 15/150 (10%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIF 253
++++ L+V GS + + GP+GSGKS+L R++ GL SG I G +++I
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 254 YVPQRPYTAVG--TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 311
+V Q Y T+RD + + L + + + ELL+ V LE L DRYP
Sbjct: 76 FVFQH-YALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP------ 128
Query: 312 WGDELSLGEQQRLGMARLFYHKPKFAILDE 341
++LS G++QR+ +AR +P+ +LDE
Sbjct: 129 --NQLSGGQRQRVALARALAVEPQVLLLDE 156
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 27/196 (13%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915
++ + G+ + GPNG+GKS++ + + GL SG + + + + I YVP
Sbjct: 23 ISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLR-IGYVP 81
Query: 916 QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL 975
Q+ R +P++ + ++ L +GK + LE V + L
Sbjct: 82 QK----SSVDRS---FPITVK--DVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDL 132
Query: 976 LEREEVGWDANLNWEDI--LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR 1033
+R+ I LS G++QR+ +AR P +LDE V ++++Y
Sbjct: 133 RDRQ------------IGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD 180
Query: 1034 LAKDM---GITFVTSS 1046
L K++ G T + +
Sbjct: 181 LLKELRQEGKTVLMVT 196
|
Length = 254 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-11
Identities = 62/251 (24%), Positives = 100/251 (39%), Gaps = 34/251 (13%)
Query: 806 LEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKS 865
+ E+LDAA P + GS+ + ++ L P + ++ ++ PG+
Sbjct: 307 IVEVLDAAGPVAE---GSAPAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGER 363
Query: 866 LLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIFYVPQRPYTCL 922
+ + GP+GSGKS++ L GL + G +T P +D++ + Q +
Sbjct: 364 VAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRR-VSVCAQDAHLFD 422
Query: 923 GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVG 982
T+R+ + L+R +A D L LE V L+ L G
Sbjct: 423 TTVRENLR--LARPDAT--------------------DEELWAALERVGLADWLRALPDG 460
Query: 983 WDANLNWED--ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR--LAKDM 1038
D L E LS GE+QRL +AR +LDE T + ++L LA
Sbjct: 461 LDTVLG-EGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALS 519
Query: 1039 GITFVTSSQRP 1049
G T V +
Sbjct: 520 GRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 55/218 (25%), Positives = 86/218 (39%), Gaps = 53/218 (24%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIF 912
++ EI G+ +L+ GPNGSGKS++ ++L GL SG + + +
Sbjct: 23 VSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82
Query: 913 YVPQRPYT--CLGTLRDQIIY-----PLSREEAELRALKLHGKGEKLVDTTNILDSYLKT 965
V Q P T+ D++ + L REE E R
Sbjct: 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERV---------------------AE 121
Query: 966 ILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN---- 1021
LE V L LL+R LS G++QR+ +A + P+ +LDE T
Sbjct: 122 ALELVGLEELLDR----------PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDP 171
Query: 1022 ATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLEL 1059
++ E L +L ++ G T + + H LEL
Sbjct: 172 KGRRELLELLKKLKEEGGKTIIIVT--------HDLEL 201
|
Length = 235 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 25/151 (16%)
Query: 200 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR- 258
+++L+++PG L + GPNG+GKS+L RV+ GL G I + G I YVPQ+
Sbjct: 22 DVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----KLRIGYVPQKL 76
Query: 259 ---PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE 315
+ R + P T +++ P LK V +L+D P +K
Sbjct: 77 YLDTTLPLTVNRFLRLRPGTKKEDILP--------ALKRVQAGHLID-APMQK------- 120
Query: 316 LSLGEQQRLGMARLFYHKPKFAILDECTSAV 346
LS GE QR+ +AR ++P+ +LDE T V
Sbjct: 121 LSGGETQRVLLARALLNRPQLLVLDEPTQGV 151
|
Length = 251 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-11
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 183 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 242
E + L +N++L ++ G + + GPNGSGKS+L R + GL SG I
Sbjct: 1 EIENLSFRYGGRTAL-DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILID 59
Query: 243 GVG------SDLNKEIFYVPQ 257
G +L + I YVPQ
Sbjct: 60 GKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-11
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 25/163 (15%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 253
G V ++ ++L ++ G + GP+G GK++L R++ G SG I G K+I
Sbjct: 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDG------KDIT 65
Query: 254 YVP--QRPYTAVG---------TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD 302
+P +RP V T+ + + + L + + + E L V LE +
Sbjct: 66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYAN 125
Query: 303 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
R P +LS G+QQR+ +AR ++PK +LDE A
Sbjct: 126 RKP--------SQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 4e-11
Identities = 55/214 (25%), Positives = 81/214 (37%), Gaps = 63/214 (29%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCG--- 910
+ ++ I G+ + + GP+GSGKS++ +L GL SG + +D S
Sbjct: 21 KGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVR-----VDGTDISKLSEKE 75
Query: 911 --------IFYVPQRPYTCLGTL--RDQIIYPL-----SREEAELRALKLHGKGEKLVDT 955
I +V Q + L L + + PL ++E RA +L
Sbjct: 76 LAAFRRRHIGFVFQS-FNLLPDLTALENVELPLLLAGVPKKERRERAEEL---------- 124
Query: 956 TNILDSYLKTILEGVRLSYLLER--EEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKF 1013
LE V L L E LS G+QQR+ +AR + PK
Sbjct: 125 -----------LERVGLGDRLNHYPSE------------LSGGQQQRVAIARALANDPKI 161
Query: 1014 GILDECTNA----TSVDVEEQLYRLAKDMGITFV 1043
+ DE T T +V E L L K+ G T V
Sbjct: 162 ILADEPTGNLDSETGKEVMELLRELNKEAGTTIV 195
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKE- 251
++N++L+VE G +I GP GSGKS L + G SG I G ++L E
Sbjct: 11 KEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK 70
Query: 252 --IFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 305
I YVPQ P+ T+ + Y L + + ++E+ + + +++LL+R P
Sbjct: 71 RDISYVPQNYALFPHM---TVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP 127
Query: 306 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 353
+ LS GEQQR+ +AR PK +LDE SA+ +E+
Sbjct: 128 --------ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEK 167
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 5e-11
Identities = 59/194 (30%), Positives = 85/194 (43%), Gaps = 44/194 (22%)
Query: 182 IEFSGV-KVVTPTGN--VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 238
IE V KV TG +++++L V G I G +G+GKS+L R + GL SG
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 239 IAKPGV------GSDL---NKEIFYVPQ-------RPYTAVGTLRDQLIYPL----TSDQ 278
+ G G +L + I + Q R T+ + + PL
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR------TVFENVALPLEIAGVPKA 115
Query: 279 EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 338
E+E ELL+ V LE D YP +LS G++QR+G+AR + PK +
Sbjct: 116 EIEERVL----ELLELVGLEDKADAYP--------AQLSGGQKQRVGIARALANNPKVLL 163
Query: 339 LDECTSAV---TTD 349
DE TSA+ TT
Sbjct: 164 CDEATSALDPETTQ 177
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 5e-11
Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 34/190 (17%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKE----IF 253
V+N++ +V PG + GPNG+GK++ FR++ GL G I G L++E I
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITW--NGGPLSQEIKNRIG 75
Query: 254 YVP-QRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD-------LEYLLDRYP 305
Y+P +R T+ DQL Y LK + L+ L+R
Sbjct: 76 YLPEERGLYPKMTVEDQLKYLAE----------------LKGMPKAEIQKKLQAWLERLE 119
Query: 306 -PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA---VTTDMEERFCAKVRAM 361
K+ ELS G QQ++ H+P+ ILDE S V ++ + +++
Sbjct: 120 IVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE 179
Query: 362 GTSCITISHR 371
G + I SHR
Sbjct: 180 GATIIFSSHR 189
|
Length = 300 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 6e-11
Identities = 64/229 (27%), Positives = 101/229 (44%), Gaps = 38/229 (16%)
Query: 836 SISFSKLDIITPSQKLLARQL---TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSG 892
+S L I+ K L + EI G++L + G +GSGKS++ R+L GL SG
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 893 SLTKPSQHIDEEAGSG---CGIFYVPQRPYTCLGTLR--DQIIYPLSREEAELRALKLHG 947
S+ + + + + + V Q PY+ L R +I+ L+ HG
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILS---------EPLRPHG 113
Query: 948 KGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLF 1007
+ +LD G+ S+ L+R LS G++QR+ +AR
Sbjct: 114 LSKSQQRIAELLDQV------GLPPSF-LDR----------RPHELSGGQRQRIAIARAL 156
Query: 1008 FHKPKFGILDECTNATSVDVEEQ----LYRLAKDMGITFVTSSQRPALI 1052
+PK ILDE T+A V V+ Q L L K+ G+T++ S AL+
Sbjct: 157 IPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV 205
|
Length = 252 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 6e-11
Identities = 50/167 (29%), Positives = 73/167 (43%), Gaps = 33/167 (19%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 253
G ++ NL L + G L + GP+G GK+++ R++ G SG I G D+
Sbjct: 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQ--DITH--- 80
Query: 254 YVP--QRPYTAV---------GTLRDQLIYPL----TSDQEVEPLTHGGMVELLKNVDLE 298
VP R V T+ + + + L T E+ P E L+ V LE
Sbjct: 81 -VPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVM----EALRMVQLE 135
Query: 299 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
R P +LS G+QQR+ +AR +KPK +LDE SA
Sbjct: 136 EFAQRKP--------HQLSGGQQQRVAIARAVVNKPKVLLLDESLSA 174
|
Length = 375 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 6e-11
Identities = 53/160 (33%), Positives = 74/160 (46%), Gaps = 19/160 (11%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEI 252
++ N++ + G LITGP+G GKS+L +++ L SG + G S L EI
Sbjct: 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78
Query: 253 F-----YVPQRPYTAVGTLRDQLIYP-LTSDQEVEPLTHGGMVELLKNVDLEYL-LDRYP 305
+ Y Q P T+ D LI+P +Q+ +P L DLE L
Sbjct: 79 YRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP------AIFLD--DLERFALPDTI 130
Query: 306 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
K I ELS GE+QR+ + R PK +LDE TSA
Sbjct: 131 LTKNIA---ELSGGEKQRISLIRNLQFMPKVLLLDEITSA 167
|
Length = 225 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 7e-11
Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 40/236 (16%)
Query: 835 DSISFSKLDIITPSQKLLA-RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS 893
++SFS P+Q++ A ++ I G+ + + G GSGKS++ ++L GL+ SGS
Sbjct: 6 RNVSFS-----YPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 894 L---TKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQII--YPLSREEAELRALKLHGK 948
+ + +D I YVPQ GTLRD I PL+ +E LRA +L G
Sbjct: 61 VLLDGTDIRQLDPADLRR-NIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAG- 118
Query: 949 GEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFF 1008
+ ++ G L+ E G LS G++Q + +AR
Sbjct: 119 ----------VTDFVNKHPNG----LDLQIGERG--------RGLSGGQRQAVALARALL 156
Query: 1009 HKPKFGILDECTNATSVDVEEQLY-RLAKDM-GITFVTSSQRPALIPFHSLELRLI 1062
+ P +LDE T+A ++ EE+L RL + + T + + RP+L+ L R+I
Sbjct: 157 NDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL---DLVDRII 209
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 9e-11
Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 40/206 (19%)
Query: 189 VVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD 247
++ TG + V +++L V G +I G +GSGKS+L R + L SG + G D
Sbjct: 30 ILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQ--D 87
Query: 248 LN------------KEIFYV-------PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM 288
+ K+I V P R T+ + + + L
Sbjct: 88 IAAMSRKELRELRRKKISMVFQSFALLPHR------TVLENVAFGLEVQGVPRAEREERA 141
Query: 289 VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--- 345
E L+ V LE +YP DELS G QQR+G+AR P ++DE SA
Sbjct: 142 AEALELVGLEGWEHKYP--------DELSGGMQQRVGLARALAVDPDILLMDEAFSALDP 193
Query: 346 -VTTDMEERFCAKVRAMGTSCITISH 370
+ +M++ + + + I+H
Sbjct: 194 LIRREMQDELLRLQAELQKTIVFITH 219
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-10
Identities = 92/374 (24%), Positives = 151/374 (40%), Gaps = 81/374 (21%)
Query: 706 SRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHN-----VTW-GLSLLYAMEHKGDRALV 759
SRF+E LE +L L K+K L T + V + G L+ + LV
Sbjct: 364 SRFKEALEETLQLNKRKALAYAGY-LWTTSVLGMLIQVLVLYYGGQLVLTGKVSSG-NLV 421
Query: 760 S---TQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPG 816
S Q +L A+R L+ V + +++ G ++FE LD +
Sbjct: 422 SFLLYQEQLGEAVRVLSYV-------YSGMMQA-------VGASEKVFEY---LD--RKP 462
Query: 817 DDEISGSSQHKW--NSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGS 874
+ ++G+ ++QD +SFS P +L + LTF + PG+ + + GP+GS
Sbjct: 463 NIPLTGTLAPLNLEGLIEFQD-VSFSY--PNRPDVPVL-KGLTFTLHPGEVVALVGPSGS 518
Query: 875 GKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY-------VPQRPYTCLGTLRD 927
GKS+V +L+ L+ G + +D Y V Q P G++R+
Sbjct: 519 GKSTVAALLQNLYQPTGGQVL-----LDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRE 573
Query: 928 QIIYPLSR-EEAELRAL-KLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 985
I Y L+ + E+ A K + +++ N D+ EVG
Sbjct: 574 NIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDT------------------EVGEKG 615
Query: 986 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTS 1045
+ LS G++QR+ +AR KP+ ILDE T+A + E+ L
Sbjct: 616 SQ-----LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRS--------R 662
Query: 1046 SQRPALIPFHSLEL 1059
+ R L+ H L
Sbjct: 663 ASRTVLLIAHRLST 676
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-10
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 34/149 (22%)
Query: 877 SSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIFYVPQRPYTCLG-TLRDQIIYP 932
S++ +++ GL SG++ + + I V Q P T+R+ + +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 933 LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 992
L +EA+ RA + LE V L L+RE VG
Sbjct: 61 LRDKEADARAEE---------------------ALERVGLPDFLDREPVG---------T 90
Query: 993 LSLGEQQRLGMARLFFHKPKFGILDECTN 1021
LS G++QR+ +AR KPK +LDE T
Sbjct: 91 LSGGQKQRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 1e-10
Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 34/182 (18%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
IEF V V+++ L +E G L++ GP+GSGK++ +++ L SG I
Sbjct: 2 IEFENV-SKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60
Query: 242 PGV------GSDLNKEIFYVPQR----PYTAVG---TLRDQL--IYPLTSDQEVEPLTHG 286
G +L ++I YV Q+ P+ V +L + +
Sbjct: 61 DGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRAD----- 115
Query: 287 GMVELLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 344
ELL V L+ DRYP ELS G+QQR+G+AR P ++DE
Sbjct: 116 ---ELLDLVGLDPSEYADRYP--------HELSGGQQQRVGVARALAADPPILLMDEPFG 164
Query: 345 AV 346
A+
Sbjct: 165 AL 166
|
Length = 309 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 25/178 (14%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
IEF V G V NL L++ G L++ GP+GSGK++ +++ L SG I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 242 PGV------GSDLNKEIFYVPQRPYTAVG-----TLRDQLIYPLTSDQEVEPLTHGGMVE 290
G +L ++I YV Q+ +G T+ + + + + E
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQ----IGLFPHMTVEENIALVPKLLKWPKEKIRERADE 116
Query: 291 LLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 346
LL V L+ DRYP ELS G+QQR+G+AR P ++DE A+
Sbjct: 117 LLALVGLDPAEFADRYP--------HELSGGQQQRVGVARALAADPPLLLMDEPFGAL 166
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 50/170 (29%), Positives = 73/170 (42%), Gaps = 34/170 (20%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNK-EI 252
+++ + L V+ G ++I GP+GSGKS+L R + L SG I G+ +K I
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 253 FYVPQRPYTAVG------------TLRDQLIYPLT-----SDQEVEPLTHGGMVELLKNV 295
+ Q+ VG T+ + + S E E ELL+ V
Sbjct: 72 NELRQK----VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERAL----ELLEKV 123
Query: 296 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
L D YP +LS G+QQR+ +AR PK + DE TSA
Sbjct: 124 GLADKADAYP--------AQLSGGQQQRVAIARALAMNPKVMLFDEPTSA 165
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 1e-10
Identities = 51/163 (31%), Positives = 71/163 (43%), Gaps = 33/163 (20%)
Query: 200 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 259
++L VE G ++I GP+GSGKS+L R L GL SG I G K+I + ++
Sbjct: 20 GISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK- 78
Query: 260 YTAVG------------TLRDQLIYPLT-----SDQEVEPLTHGGMVELLKNVDLEYLLD 302
VG T+ + + S E + ELL+ V L D
Sbjct: 79 ---VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREK---AL-ELLEKVGLADKAD 131
Query: 303 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
YP +LS G+QQR+ +AR PK + DE TSA
Sbjct: 132 AYP--------AQLSGGQQQRVAIARALAMDPKVMLFDEPTSA 166
|
Length = 240 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 1e-10
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 23/263 (8%)
Query: 139 RLNRLSGYADRIHELMVISREL-SIEDKSPQRNGSRNYFSEANY---IEFSGVKVVTPTG 194
RL+++SG+ +I E + +ED QR + N +EF +
Sbjct: 288 RLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANS 347
Query: 195 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDL 248
+ V +++ + + G + I GP G+GK++L +L ++ G I G+ L
Sbjct: 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESL 407
Query: 249 NKEIFYVPQRPYTAVGTLRDQLIYPLT--SDQEVEPLTHGGMVELLKNVDLEYLLDRYPP 306
K I V Q ++R+ + +D+EV +++L R
Sbjct: 408 RKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAH-------DFILKRSNG 460
Query: 307 EKEI--NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTS 364
+ G+ LS GE+QRL +AR +LDE TSA+ + E R + A+ +
Sbjct: 461 YDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKN 520
Query: 365 CIT--ISHRPALVAFHDVVLSLD 385
T I+HR + V D+VL LD
Sbjct: 521 RTTFIIAHRLSTVRNADLVLFLD 543
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 31/188 (16%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIF 912
++F + PG+ + GP+GSGKS+V +L + G + KP + + +
Sbjct: 33 VSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS-KVS 91
Query: 913 YVPQRPYTCLGTLRDQIIYPL---SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEG 969
V Q P +L+D I Y L S E + A K H S++ + G
Sbjct: 92 LVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHA------------HSFISELASG 139
Query: 970 VRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEE 1029
EVG + LS G++QR+ +AR P+ ILDE T+A + E+
Sbjct: 140 Y-------DTEVGEKGSQ-----LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187
Query: 1030 QLYRLAKD 1037
Q+ + D
Sbjct: 188 QVQQALYD 195
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 51/181 (28%), Positives = 75/181 (41%), Gaps = 38/181 (20%)
Query: 852 LARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGI 911
L L+F + G++L VTGPNG GK+++ R+L GL SG + + E+
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDE---- 70
Query: 912 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR 971
P R LG + LS E LH + I G +
Sbjct: 71 ---PHRNILYLGH-LPGLKPELSALE------NLH---------------FWAAIHGGAQ 105
Query: 972 LSYLLEREEVGWDANLNWEDI----LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDV 1027
+ VG +ED+ LS G+Q+RL +ARL+ + ILDE T T++D
Sbjct: 106 RTIEDALAAVGLTG---FEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPT--TALDK 160
Query: 1028 E 1028
Sbjct: 161 A 161
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 36/197 (18%)
Query: 855 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 914
++ + G+ GPNG+GK++ +++ GL SG +T + +
Sbjct: 18 DISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIE-------- 69
Query: 915 PQRPYTCLGTLRD-QIIYP-LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 972
+G L + YP L+ E +L G +K +D +L+ V L
Sbjct: 70 ---ALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDE----------VLDVVGL 116
Query: 973 SYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVD-VEE-- 1029
+++V SLG +QRLG+A P ILDE TN D ++E
Sbjct: 117 KDS-AKKKVK---------GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELR 166
Query: 1030 QLYRLAKDMGITFVTSS 1046
+L +D GIT + SS
Sbjct: 167 ELILSLRDQGITVLISS 183
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 2e-10
Identities = 56/204 (27%), Positives = 82/204 (40%), Gaps = 37/204 (18%)
Query: 192 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD---- 247
P G +++ L E G L + G NG+GKS+L L GL SG + G D
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 248 ----LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE--PLTHGG--------MVELLK 293
+ + V Q P DQL DQ+V PL G + E L
Sbjct: 62 GLLERRQRVGLVFQDP-------DDQLFAA-DVDQDVAFGPLNLGLSEAEVERRVREALT 113
Query: 294 NVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 353
V L +R P LS GE++R+ +A +P +LDE T+ + E+
Sbjct: 114 AVGASGLRER-PTH-------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQ 165
Query: 354 FCA---KVRAMGTSCITISHRPAL 374
A ++RA G + + +H L
Sbjct: 166 MLAILRRLRAEGMTVVISTHDVDL 189
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 60/211 (28%), Positives = 93/211 (44%), Gaps = 53/211 (25%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS-------LTKPSQHIDEEAGSG 908
++F I G++L + G +GSGKS++ R + GL SGS L K S+ + +
Sbjct: 24 VSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKE 83
Query: 909 CGIFYVPQRPYTCLG---TLRDQIIYPL------SREEAELRALKLHGKGEKLVDTTNIL 959
I V Q P + L T+ +QI PL S++EA A+ L + +L
Sbjct: 84 --IQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLL--LLVGVGLPEEVL 139
Query: 960 DSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDEC 1019
+ Y E LS G++QR+ +AR PK I DE
Sbjct: 140 NRY--------------PHE-------------LSGGQRQRVAIARALALNPKLLIADEP 172
Query: 1020 TNATSVDVEEQ----LYRLAKDMGIT--FVT 1044
T+A V V+ Q L +L +++G+T F+T
Sbjct: 173 TSALDVSVQAQILDLLKKLQEELGLTLLFIT 203
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 3e-10
Identities = 57/208 (27%), Positives = 90/208 (43%), Gaps = 44/208 (21%)
Query: 189 VVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S 246
++ TG V+ V + +L VE G +I G +GSGKS+L R+L L G I G +
Sbjct: 34 ILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIA 93
Query: 247 DLNKE------------IF----YVPQRPYTAVGTLRDQLIYPL----TSDQEVEPLTHG 286
L+ +F +P R T+ + + + L E E
Sbjct: 94 KLSAAELRELRRKKISMVFQSFALLPHR------TVLENVAFGLEVQGVPKAEREERAL- 146
Query: 287 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA- 345
E L+ V LE D+YP +ELS G QQR+G+AR + P ++DE SA
Sbjct: 147 ---EALELVGLEGYADKYP--------NELSGGMQQRVGLARALANDPDILLMDEAFSAL 195
Query: 346 ---VTTDMEERFCAKVRAMGTSCITISH 370
+ T+M++ + + + I+H
Sbjct: 196 DPLIRTEMQDELLELQAKLKKTIVFITH 223
|
Length = 386 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 3e-10
Identities = 56/202 (27%), Positives = 100/202 (49%), Gaps = 14/202 (6%)
Query: 192 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLN- 249
P G +++++++L++EPG + I GP+GSGKS+L R+L G SG + G + L+
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDV 522
Query: 250 ----KEIFYVPQRPYTAVGTLRDQLI--YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 303
+++ V Q G++ + + PLT D+ E G+ E ++ + + +
Sbjct: 523 QAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMG--MHT 580
Query: 304 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 363
E G LS G++QRL +AR KP+ + DE TSA+ + + +
Sbjct: 581 VISEG----GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKV 636
Query: 364 SCITISHRPALVAFHDVVLSLD 385
+ I I+HR + + D + LD
Sbjct: 637 TRIVIAHRLSTIRNADRIYVLD 658
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 3e-10
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
+EF V G +L+++L+ +++ G + I GPNG+GKS+L ++L G +SG + K
Sbjct: 322 LEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV-K 380
Query: 242 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 301
G +I Y Q RD+L T +E+ G + ++ +
Sbjct: 381 VGE----TVKIGYFDQH--------RDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428
Query: 302 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 343
EK + LS GE+ RL +A+L P +LDE T
Sbjct: 429 TGEDQEKPVG---VLSGGEKARLLLAKLLLQPPNLLLLDEPT 467
|
Length = 530 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 4e-10
Identities = 66/238 (27%), Positives = 105/238 (44%), Gaps = 41/238 (17%)
Query: 167 PQRNGSRNYFSEANYIEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLF 225
P+ G+ I F ++ P ++ NL L ++PG + I GP+GSGKS+L
Sbjct: 450 PELRGA---------ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLT 500
Query: 226 RVLGGLWP------LVSGH---IAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQ--LIYPL 274
++L L+ LV G IA P + L +++ V Q ++RD L P
Sbjct: 501 KLLQRLYTPQHGQVLVDGVDLAIADP---AWLRRQMGVVLQENVLFSRSIRDNIALCNPG 557
Query: 275 TSDQEVEPLT-----HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 329
+ V H + EL + + E EK G LS G++QR+ +AR
Sbjct: 558 APFEHVIHAAKLAGAHDFISELPQGYNTEVG------EK----GANLSGGQRQRIAIARA 607
Query: 330 FYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 385
P+ I DE TSA+ + E +R + G + I I+HR + V D ++ L+
Sbjct: 608 LVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLE 665
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 4e-10
Identities = 62/208 (29%), Positives = 93/208 (44%), Gaps = 49/208 (23%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDL--------- 248
V+ +TL++ G L + G +G GKS+ R + GL G +A +G DL
Sbjct: 37 VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVA--WLGKDLLGMKDDEWR 94
Query: 249 --NKEIFYVPQRPYTAVG---TLRD------QLIYPLTSDQEVEPLTHGGM--VELLKNV 295
+I + Q P ++ T+ + + +P S QEV+ M V LL N
Sbjct: 95 AVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN- 153
Query: 296 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFC 355
L++RYP E S G+ QR+G+AR +PK I DE SA+ ++
Sbjct: 154 ----LINRYP--------HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQ---- 197
Query: 356 AKV--------RAMGTSCITISHRPALV 375
A+V R MG S I I+H A+V
Sbjct: 198 AQVVNLLQQLQREMGLSLIFIAHDLAVV 225
|
Length = 331 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 5e-10
Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 34/203 (16%)
Query: 197 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG----VGSD----- 247
+++++T+K+ S I GP+GSGKS+L +VL L + I G G D
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 248 ---LNKEIFYVPQRPYTAVG-TLRDQLIYPLTS-----DQEVEPLTHGGMVELLKNVDL- 297
L KE+ V Q+P ++ D + YPL S +E++ + + E L+ V L
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKI----VEECLRKVGLW 140
Query: 298 EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEER 353
+ + DR +LS G+QQRL +AR KPK ++DE TS + + +E+
Sbjct: 141 KEVYDRLNSP-----ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKL 195
Query: 354 FCAKVRAMGTSCITISHRPALVA 376
+ + + +SH P VA
Sbjct: 196 ITELKNEI--AIVIVSHNPQQVA 216
|
Length = 257 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 6e-10
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 23/158 (14%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNK--- 250
+++L L + G +++ GP+G GK++ R++ GL SG I G D+
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGR--DVTDLPP 69
Query: 251 ---EIFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 303
+I V Q P+ V D + + L + + + E+ + + +E+LLDR
Sbjct: 70 KDRDIAMVFQNYALYPHMTV---YDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDR 126
Query: 304 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
P +LS G++QR+ + R +PK ++DE
Sbjct: 127 KP--------KQLSGGQRQRVALGRAIVREPKVFLMDE 156
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 6e-10
Identities = 53/220 (24%), Positives = 86/220 (39%), Gaps = 51/220 (23%)
Query: 184 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH----- 238
F G+ + +++ V PG + GPNG+GK++LF ++ G SG
Sbjct: 10 FGGLVALD--------DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDG 61
Query: 239 ----------IAKPGVG-SDLNKEIF---------YVPQRPYTAVGTLRDQLIYPLTSDQ 278
IA+ G+G + +F V + T G L + ++
Sbjct: 62 EDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLAR---ARREER 118
Query: 279 EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 338
E ELL+ V L L DR ELS G+Q+RL +AR PK +
Sbjct: 119 EARERAE----ELLERVGLADLADRPA--------GELSYGQQRRLEIARALATDPKLLL 166
Query: 339 LDECTSAVTTDMEERFCA---KVRAMGTSCITISHRPALV 375
LDE + + + E ++R G + + + H +V
Sbjct: 167 LDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVV 206
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 6e-10
Identities = 57/221 (25%), Positives = 88/221 (39%), Gaps = 33/221 (14%)
Query: 849 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSG 908
++ L L+F + G++L +TGPNG+GK+++ R+L GL +G + + I S
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES- 72
Query: 909 CGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRAL-KLHGKGEKLVDTTNILDSYLKTIL 967
+ LG + I L+ E L + HG G + + L
Sbjct: 73 ------YHQALLYLGH-QPGIKTELTALE-NLHFWQRFHGSGN---------AATIWEAL 115
Query: 968 EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDV 1027
V L+ LE VG LS G+Q+R+ +ARL+ ILDE A +
Sbjct: 116 AQVGLAG-LEDLPVGQ---------LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEG 165
Query: 1028 EEQLYRL----AKDMGITFVTSSQRPALIPFHSLELRLIDG 1064
L L A GI +T+ Q + L L
Sbjct: 166 VALLTALMAAHAAQGGIVLLTTHQPLPIASAQIRRLDLTAT 206
|
Length = 209 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 6e-10
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 22/181 (12%)
Query: 164 DKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSS 223
+K+ Q N R + S+ N + FS + +V G +++N+ LK+E G L ITG GSGK+S
Sbjct: 22 EKAKQENNDRKHSSDDNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTS 78
Query: 224 LFR-VLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP 282
L +LG L P G I G I + Q + GT+++ +I+ ++ D+
Sbjct: 79 LLMLILGELEP-SEGKIKHSG-------RISFSSQFSWIMPGTIKENIIFGVSYDEY--- 127
Query: 283 LTHGGMVELLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAIL 339
++K LE + ++P + G+ LS G++ R+ +AR Y +L
Sbjct: 128 ----RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLL 183
Query: 340 D 340
D
Sbjct: 184 D 184
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 7e-10
Identities = 59/218 (27%), Positives = 88/218 (40%), Gaps = 52/218 (23%)
Query: 858 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP----VVSGSLTKPSQHI----DEEAGSGC 909
FE+ PG+ L + G +GSGKS++ L GL P + SG + + + + E
Sbjct: 30 FEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLR 89
Query: 910 G--IFYVPQRPYTCLG---TLRDQII------YPLSREEAELRALKLHGKGEKLVDTTNI 958
G I + Q P T L T+ DQI SR EA RA++L
Sbjct: 90 GKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVEL------------- 136
Query: 959 LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1018
LE V L + E + LS G +QR+ +A KPK I DE
Sbjct: 137 --------LEQVGLP---DPERRDRYPH-----QLSGGMRQRVMIAMALALKPKLLIADE 180
Query: 1019 CTNATSVDVEEQ----LYRLAKDMGITFVTSSQRPALI 1052
T A V + Q L L +++G+ + + ++
Sbjct: 181 PTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVV 218
|
Length = 539 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 7e-10
Identities = 55/209 (26%), Positives = 83/209 (39%), Gaps = 37/209 (17%)
Query: 849 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDE-E 904
K + L+F I G+ + GPNGSGKS++ + L GL SG + K + E
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE 73
Query: 905 AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLV---DTTNILDS 961
YVPQ P + L+ E L H D + ++
Sbjct: 74 LAKKLA--YVPQSP---------SAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEA 122
Query: 962 YLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1021
LE + L +L +R D LS GE+QR+ +AR + +LDE T+
Sbjct: 123 -----LELLGLEHLADR---PVDE-------LSGGERQRVLIARALAQETPILLLDEPTS 167
Query: 1022 A----TSVDVEEQLYRLAKDMGITFVTSS 1046
++V E L L ++ G+T V
Sbjct: 168 HLDIAHQIEVLELLRDLNREKGLTVVMVL 196
|
Length = 258 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 7e-10
Identities = 58/200 (29%), Positives = 88/200 (44%), Gaps = 46/200 (23%)
Query: 847 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE--- 903
P + +L + ++F I GK + + GP+GSGKS++ R+L + V SGS+ Q I E
Sbjct: 12 PGRPVL-KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTL 70
Query: 904 ----EAGSGCGIFYVPQRPYTCL--GTLRDQIIY--PLSREEAELRALKLHGKGEKLVDT 955
A I VPQ T L T+ I Y P + +E + A K +K++
Sbjct: 71 DSLRRA-----IGVVPQD--TVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIM-- 121
Query: 956 TNILDSYLKTIL--EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKF 1013
D Y TI+ G++LS G GE+QR+ +AR P
Sbjct: 122 -RFPDGY-DTIVGERGLKLS--------G-------------GEKQRVAIARAILKNPPI 158
Query: 1014 GILDECTNATSVDVEEQLYR 1033
+LDE T+A E ++
Sbjct: 159 LLLDEATSALDTHTEREIQA 178
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 7e-10
Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HIAKPGVGSDLNKEIFYV 255
+++++ VE G + GPNG+GK++ R++ G+ SG + I Y+
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75
Query: 256 PQ-RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP-PEKEINWG 313
P+ R + DQL+Y L + ++ E + +D L+R E
Sbjct: 76 PEERGLYPKMKVIDQLVY-LAQLKGLKK------EEARRRID--EWLERLELSEYANKRV 126
Query: 314 DELSLGEQQRLGMARLFYHKPKFAILDECTSA---VTTDMEERFCAKVRAMGTSCITISH 370
+ELS G QQ++ H P+ ILDE S V ++ + ++ G + I +H
Sbjct: 127 EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTH 186
Query: 371 RPALV 375
+ LV
Sbjct: 187 QMELV 191
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 9e-10
Identities = 64/237 (27%), Positives = 97/237 (40%), Gaps = 44/237 (18%)
Query: 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 896
I L P+ K + ++ I PG+ + + GP+G+GKS++ R L GL SGS+
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL- 59
Query: 897 PSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQI--I---YPLSREEAELRALK--LHGKG 949
ID + + L LR QI I + L L L+ L G+
Sbjct: 60 ----IDGTD--------INKLKGKALRQLRRQIGMIFQQFNLI---ERLSVLENVLSGR- 103
Query: 950 EKLVDTTNILDSYLK--TILEGVRLSYLLEREEVGWDANLNWE-DILSLGEQQRLGMARL 1006
+ + S E R LER VG D LS G+QQR+ +AR
Sbjct: 104 ---LGRRSTWRSLFGLFPKEEKQRALAALER--VGLLDKAYQRADQLSGGQQQRVAIARA 158
Query: 1007 FFHKPKFGILDECTN----ATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLEL 1059
+PK + DE A+S V + L R+ ++ GIT ++ H ++L
Sbjct: 159 LMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGIT--------VIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 9e-10
Identities = 46/180 (25%), Positives = 71/180 (39%), Gaps = 31/180 (17%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 253
L +L+ + G L ITGPNG+GK++L R+L GL +G + G +E +
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESY 73
Query: 254 -----YVPQRP-----YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD- 302
Y+ +P TA+ L + + E L V L L D
Sbjct: 74 HQALLYLGHQPGIKTELTALENLH---FWQRFHGSGNAA----TIWEALAQVGLAGLEDL 126
Query: 303 --RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 360
LS G+Q+R+ +ARL+ ILDE +A+ + A + A
Sbjct: 127 PVGQ-----------LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAA 175
|
Length = 209 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 1e-09
Identities = 53/216 (24%), Positives = 86/216 (39%), Gaps = 57/216 (26%)
Query: 184 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG 243
F GVK + ++L V PG + G NG+GKS+L ++L G++P SG
Sbjct: 18 FGGVKALD--------GVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG------ 63
Query: 244 VGSDLNKEIFY--VPQRPYTAVGTLRD--QLIYPLTSDQEV----------------EPL 283
EI P + L ++ QE+ EP
Sbjct: 64 -------EILIDGKPVAFSSPRDALAAGIATVH-----QELSLVPNLSVAENIFLGREPT 111
Query: 284 THGGMVELLK-NVDLEYLLDRY----PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 338
G+++ LL R P+ + +LS+ ++Q + +AR + I
Sbjct: 112 RRFGLIDRKAMRRRARELLARLGLDIDPDTLVG---DLSIAQRQMVEIARALSFDARVLI 168
Query: 339 LDECTSAVT---TDMEERFCAKVRAMGTSCITISHR 371
LDE T+A+T T+ +++A G + I ISHR
Sbjct: 169 LDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHR 204
|
Length = 500 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 60/181 (33%), Positives = 80/181 (44%), Gaps = 33/181 (18%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG---- 237
IEF V VL N+ L ++ G ++I GP+GSGKS+L R + L + SG
Sbjct: 2 IEFKNVSKHFGPTQVL-HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60
Query: 238 ---HIAKPGVG-SDLNKEIFYVPQRPY-----TAVGTLRDQLIYPL----TSDQEVEPLT 284
+ P V + +E V Q+ Y TA L + + PL S +E E
Sbjct: 61 DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTA---LENVMFGPLRVRGASKEEAEKQA 117
Query: 285 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 344
ELL V L YP ELS G+QQR+ +AR KPK + DE TS
Sbjct: 118 R----ELLAKVGLAERAHHYP--------SELSGGQQQRVAIARALAVKPKLMLFDEPTS 165
Query: 345 A 345
A
Sbjct: 166 A 166
|
Length = 240 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 37/166 (22%)
Query: 200 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 259
++ L++ PG +++TGP+GSGK++L ++GGL + G + L +E++ ++
Sbjct: 23 DINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL------KVLGQELYGASEKE 76
Query: 260 YTAVGTLRDQLIY---------PLTSDQEV-------EPLTHGGMVEL----LKNVDLEY 299
+ R + Y LT+ Q V L++ E L+ V L
Sbjct: 77 LVQL---RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGD 133
Query: 300 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
LD YP LS G++QR+ +AR H+PK + DE T+A
Sbjct: 134 HLDYYP--------HNLSGGQKQRVAIARALVHRPKLVLADEPTAA 171
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 23/185 (12%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 257
V +++ + E G + G NG+GK++L R++ L SG + GV D ++ +V +
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGV--DTVRDPSFVRR 75
Query: 258 RPYTAVGTLRDQ--LIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGD- 314
+ +G L + L LT+ E L + + L +++ + K + +
Sbjct: 76 K----IGVLFGERGLYARLTAR---ENLKYFARLNGLSRKEIKARIAEL--SKRLQLLEY 126
Query: 315 ------ELSLGEQQRLGMARLFYHKPKFAILDECTSAV---TTDMEERFCAKVRAMGTSC 365
E S G +Q++ +AR H P +LDE TS + T F +++ G +
Sbjct: 127 LDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAV 186
Query: 366 ITISH 370
I SH
Sbjct: 187 IFSSH 191
|
Length = 245 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 30/186 (16%)
Query: 200 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDL-----NKEIFY 254
++TL G L++ GP+G+GKSSL RVL L SG + G D +K I
Sbjct: 20 DITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI-- 77
Query: 255 VPQRPYTAVGTLRDQL-IYPLTSDQE--VE-PLTHGGM---------VELLKNVDLEYLL 301
+ VG + Q ++P + QE +E P G+ +LLK + L+
Sbjct: 78 --RDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYA 135
Query: 302 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM 361
DRYP LS G+QQR+ +AR +P+ + DE T+A+ ++ + + ++ +
Sbjct: 136 DRYPL--------HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL 187
Query: 362 GTSCIT 367
+ IT
Sbjct: 188 AETGIT 193
|
Length = 242 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 39/208 (18%)
Query: 200 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDL-N 249
++L + G + I G +GSGKS+L +LGGL SG + G + L N
Sbjct: 23 GVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRN 82
Query: 250 KEIFYVPQ-----RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRY 304
K++ ++ Q +TA L + + L + V+ E+L+ V LE+ ++
Sbjct: 83 KKLGFIYQFHHLLPDFTA---LENVAMPLLIGKKSVKEAKERAY-EMLEKVGLEHRINHR 138
Query: 305 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV------ 358
P ELS GE+QR+ +AR ++P + DE T +++ +
Sbjct: 139 P--------SELSGGERQRVAIARALVNQPSLVLADEPTG----NLDNNNAKIIFDLMLE 186
Query: 359 --RAMGTSCITISHRPALVAFHDVVLSL 384
R + TS + ++H L D VL +
Sbjct: 187 LNRELNTSFLVVTHDLELAKKLDRVLEM 214
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-09
Identities = 74/306 (24%), Positives = 125/306 (40%), Gaps = 52/306 (16%)
Query: 761 TQGELAHALRFLASVVSQSFLAFGDIL-ELHRKFVELSGGINRIFELEELLDAAQPGDDE 819
+ G L F A +V+ S ++ EL R +G R+ EL + A+P +
Sbjct: 273 SAGTLG-QFVFYAVMVAGSIGTLSEVWGELQRA----AGAAERLIELLQ----AEP---D 320
Query: 820 ISGSSQHKWNSTDYQDSISFSKLDIITPSQ--KLLARQLTFEIVPGKSLLVTGPNGSGKS 877
I + K + I F +++ P++ + L + PG+++ + GP+G+GKS
Sbjct: 321 IKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKS 380
Query: 878 SVFRVLRGLWPVVSGSLTKPSQHID--EEAGSGCGIFYVPQRPYTCLGTLRDQIIY---P 932
++F++L + SG + + + A + VPQ P ++ + I Y
Sbjct: 381 TLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPD 440
Query: 933 LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 992
+ EE E A H ++ + EG +YL ER
Sbjct: 441 ATDEEVEAAARAAHA------------HEFISALPEGYD-TYLGERGVT----------- 476
Query: 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVE-EQLYRLAKDMGITFVTSSQRPAL 1051
LS G++QR+ +AR +LDE T+A +D E EQL + A + R L
Sbjct: 477 LSGGQRQRIAIARAILKDAPILLLDEATSA--LDAESEQLVQQALE-----TLMKGRTTL 529
Query: 1052 IPFHSL 1057
I H L
Sbjct: 530 IIAHRL 535
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 25/153 (16%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 257
+++++L V+ G GPNG+GK++ +++ GL SG I G N E
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIE------ 69
Query: 258 RPYTAVGTLRD-QLIYP-LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE 315
+G L + YP LT+ E L + ++ ++ +LD + D
Sbjct: 70 -ALRRIGALIEAPGFYPNLTA---RENLRLLARLLGIRKKRIDEVLD------VVGLKDS 119
Query: 316 -------LSLGEQQRLGMARLFYHKPKFAILDE 341
SLG +QRLG+A P ILDE
Sbjct: 120 AKKKVKGFSLGMKQRLGIALALLGNPDLLILDE 152
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 61/210 (29%), Positives = 94/210 (44%), Gaps = 35/210 (16%)
Query: 200 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNK--------- 250
N++L +E G + + G +G GKS+L R+L GL G ++ G DL +
Sbjct: 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQ--DLYQLDRKQRRAF 86
Query: 251 --EIFYVPQRPYTAVG---TLRDQLIYPL---TSDQEVEPLTHGGMVELLKNVDLE-YLL 301
++ V Q +AV T+R + PL TS E E + ELL V L
Sbjct: 87 RRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKAR--IAELLDMVGLRSEDA 144
Query: 302 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM 361
D+ P + LS G+ QR+ +AR KPK +LDE S + ++ +R +
Sbjct: 145 DKLPRQ--------LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKL 196
Query: 362 ----GTSCITISHRPALV-AFHDVVLSLDG 386
GT+ + I+H LV +F V +D
Sbjct: 197 QQAFGTAYLFITHDLRLVQSFCQRVAVMDK 226
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 34/186 (18%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
+E + V P G ++N+ L + PG + I GP+G+GKS+L R + L SG I
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61
Query: 242 PGV------GSDLNK---EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHG------ 286
G G L K I + Q Y LI LT + V HG
Sbjct: 62 EGTDITKLRGKKLRKLRRRIGMIFQH-Y--------NLIERLTVLENV---LHGRLGYKP 109
Query: 287 ---GMVELLKNVDLE---YLLDRYP-PEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 339
++ D E L+R +K D+LS G+QQR+ +AR +P +
Sbjct: 110 TWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILA 169
Query: 340 DECTSA 345
DE ++
Sbjct: 170 DEPIAS 175
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 32/193 (16%)
Query: 200 NLTLKVE---PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-VGSDLNKEIFYV 255
+ TLK++ I G +G+GKS+L R + GL G I G V D K+I
Sbjct: 12 DFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLP 71
Query: 256 PQRPYTAVG------------TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 303
PQ+ +G +R+ L + L + E + ELL + L++LL+R
Sbjct: 72 PQQ--RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRIS--VDELLDLLGLDHLLNR 127
Query: 304 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 363
YP +LS GE+QR+ +AR +P+ +LDE SA+ + + +++ +
Sbjct: 128 YP--------AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK 179
Query: 364 S----CITISHRP 372
+ I ++H
Sbjct: 180 NLNIPVIFVTHDL 192
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKP--GVGSDL 248
+L L+ + G + I GPNG+GK+SL R+L GL +G + +P +
Sbjct: 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEY 72
Query: 249 NKEIFYVPQRP-----YTAVGTLR--DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 301
++++ Y+ +P TA+ LR +L P + E L G+ E +
Sbjct: 73 HQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGL------AGFEDVP 126
Query: 302 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
R LS G+Q+R+ +ARL+ + ILDE
Sbjct: 127 VRQ-----------LSAGQQRRVALARLWLTRAPLWILDE 155
|
Length = 204 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 24/198 (12%)
Query: 197 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVG-SDLNKE-- 251
+++ + L V+ G I GPNGSGKS+L + G + + G I G +L+ +
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78
Query: 252 ----IFYVPQRPYTAVG-TLRDQLIYPLTS---DQEVEPLTHGGMVELLKNVDL-EYLLD 302
IF Q P G T D L + + + + P + E + + L E L+
Sbjct: 79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE 138
Query: 303 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM- 361
RY +N G S GE++R + +L +PK AILDE S + D + + A+
Sbjct: 139 RY-----VNEG--FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR 191
Query: 362 --GTSCITISHRPALVAF 377
G + I+H L+ +
Sbjct: 192 EEGRGVLIITHYQRLLDY 209
|
Length = 251 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 28/205 (13%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKE 251
+++++ V G + I G NGSGKS+L ++L GL +G I G+ D+ ++
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82
Query: 252 IFYVPQRPYTA-VG-TLRDQLIYPLTSDQEVEPLTHGGMVE----LLKNVDLEYLLDRYP 305
+ V Q P VG T++D + + L E + MVE L+ V +E L+R P
Sbjct: 83 VGMVFQNPDNQFVGATVQDDVAFGL----ENIGVPREEMVERVDQALRQVGMEDFLNREP 138
Query: 306 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM---- 361
LS G++QR+ +A + +P ILDE TS + VR +
Sbjct: 139 --------HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK 190
Query: 362 GTSCITISHRPALVAFHDVVLSLDG 386
G + ++I+H A D V+ ++
Sbjct: 191 GITVLSITHDLDEAAQADRVIVMNK 215
|
Length = 279 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 54/215 (25%), Positives = 82/215 (38%), Gaps = 31/215 (14%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
IEF V P G ++ + + + G + + GP+G+GKS+L +++ SG I
Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60
Query: 242 PGVG-SDLNKEIFYVPQRPY--TAVGT-LRD-QLIYPLTSDQEV----EPLTHGGMV--- 289
G SDL PY +G +D +L+ + V E
Sbjct: 61 NGQDVSDLRGR-----AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK 115
Query: 290 ---ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 346
L+ V L + P ELS GEQQR+ +AR + P I DE T +
Sbjct: 116 RVPAALELVGLSHKHRALP--------AELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167
Query: 347 TTDMEERFC---AKVRAMGTSCITISHRPALVAFH 378
D K+ GT+ + +H LV
Sbjct: 168 DPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTT 202
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 4e-09
Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 51/206 (24%)
Query: 857 TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT--------KPSQHIDEEAGSG 908
+F++ G++L + G +GSGKS++ R+L GL P SGS+ +
Sbjct: 311 SFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRR-- 368
Query: 909 CGIFYVPQRPYTCL---GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKT 965
I V Q PY+ L T+ D + PL R E+ + +
Sbjct: 369 --IQMVFQDPYSSLNPRMTVGDILAEPL-------RIHGGGSGAER--------RARVAE 411
Query: 966 ILEGVRLSY-LLER---EEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1021
+LE V L L+R E LS G++QR+ +AR +PK ILDE +
Sbjct: 412 LLELVGLPPEFLDRYPHE-------------LSGGQRQRVAIARALALEPKLLILDEPVS 458
Query: 1022 ATSVDVEEQ----LYRLAKDMGITFV 1043
A V V+ Q L L +++G+T++
Sbjct: 459 ALDVSVQAQVLNLLKDLQEELGLTYL 484
|
Length = 539 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-09
Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 27/172 (15%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 253
L+EN++L + PG + + G NG+GKS+L ++L G SG + +P +
Sbjct: 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK-----GLRVG 69
Query: 254 YVPQRPY-TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY--------LLDRY 304
Y+ Q P T+ D +I +E+ L D LD +
Sbjct: 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGW 129
Query: 305 PPEKEIN-----WGD--------ELSLGEQQRLGMARLFYHKPKFAILDECT 343
E G LS G ++R+ +AR +P +LDE T
Sbjct: 130 TLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPT 181
|
Length = 530 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 4e-09
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 37/181 (20%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 253
++ +++L +E G + + GP+GSGKS+L R + GL SG I G DL
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGE--DLTDLED 69
Query: 254 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWG 313
+P LR ++ Q+ H + +L+N+
Sbjct: 70 ELP--------PLRRRIGMVF---QDFALFPH---LTVLENI-------ALG-------- 100
Query: 314 DELSLGEQQRLGMARLFYHKPKFAILDECTSA---VTTDMEERFCAKVRAM-GTSCITIS 369
LS G+QQR+ +AR P +LDE TSA +T ++A G + + ++
Sbjct: 101 --LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVT 158
Query: 370 H 370
H
Sbjct: 159 H 159
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 5e-09
Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 28/225 (12%)
Query: 182 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG- 237
+E ++ P+G VE ++L + G + I G +GSGKS+L +LG L SG
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 238 -HIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGM------- 288
+A V + L+ + +R + R L+ LT+ Q VE P + G+
Sbjct: 65 YRVAGQDV-ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLL 123
Query: 289 --VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 346
ELL+ + LE ++ Y P +LS G+QQR+ +AR + + + DE T A+
Sbjct: 124 RAQELLQRLGLEDRVE-YQP-------SQLSGGQQQRVSIARALMNGGQVILADEPTGAL 175
Query: 347 TTDMEERFCA---KVRAMGTSCITISHRPALVAFHDVVLSL-DGE 387
+ E A ++R G + I ++H P + A + V+ + DGE
Sbjct: 176 DSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGE 220
|
Length = 648 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 5e-09
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 28/158 (17%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKE------ 251
+ ++L+VE G + + G NG+GK++L + + GL SG I G D+
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGE--DITGLPPHERA 76
Query: 252 ---IFYVPQRPYTAVGTLRDQLIYPLTSDQE---VEPLTHGGMVELLKNVDLEYLLDRYP 305
I YVP+ R I+P + +E + + DLE + + +P
Sbjct: 77 RLGIAYVPEG--------RR--IFPRLTVEENLLLGAYARRDKEA--QERDLEEVYELFP 124
Query: 306 PEKEI--NWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
KE LS GEQQ L +AR +PK +LDE
Sbjct: 125 RLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDE 162
|
Length = 237 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 5e-09
Identities = 56/202 (27%), Positives = 88/202 (43%), Gaps = 36/202 (17%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCG 910
R ++ E+ G+ V G NG GK+++ + L GL PV SGS+ + + + G
Sbjct: 17 RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAG 76
Query: 911 IFYVPQ-RPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEG 969
I YVPQ R +I L+ EE L L + + + I + L +L+
Sbjct: 77 IAYVPQGR----------EIFPRLTVEENLLTGLAALPRRSRKIP-DEIYE--LFPVLKE 123
Query: 970 VRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNAT--SV-- 1025
+ R G D LS G+QQ+L +AR +PK +LDE T S+
Sbjct: 124 ML-----GRR--GGD--------LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIK 168
Query: 1026 DVEEQLYRLAKDMGITFVTSSQ 1047
D+ + RL + G+ + Q
Sbjct: 169 DIGRVIRRLRAEGGMAILLVEQ 190
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 6e-09
Identities = 51/219 (23%), Positives = 94/219 (42%), Gaps = 40/219 (18%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIF 912
++ + G+ + +TGP+G GKS++ +++ L SG+L + + EA +
Sbjct: 22 ISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYR-QQVS 80
Query: 913 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 972
Y Q P T+ D +I+P ++R + D LD
Sbjct: 81 YCAQTPALFGDTVEDNLIFP-----WQIRNRR--------PDRAAALD------------ 115
Query: 973 SYLLEREEVGWDANLNWE-DILSLGEQQRLGMARLFFHKPKFGILDECTNATSV----DV 1027
LL R + D+ L LS GE+QR+ + R PK +LDE T+A ++
Sbjct: 116 --LLARFALP-DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172
Query: 1028 EEQLYRLA--KDMGITFVTSSQRPALIPFHSLELRLIDG 1064
EE ++R +++ + ++T + A+ + + L G
Sbjct: 173 EEMIHRYVREQNVAVLWITHDKDQAIRHADKV-ITLQPG 210
|
Length = 223 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 6e-09
Identities = 60/216 (27%), Positives = 93/216 (43%), Gaps = 48/216 (22%)
Query: 855 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC----- 909
+++F++ PG++L + G +GSGKS+ R L L G + Q ID +
Sbjct: 342 KVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRR 401
Query: 910 GIFYVPQRPYTCLG---TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTI 966
I ++ Q PY L T+ D I+ P L++HG +
Sbjct: 402 DIQFIFQDPYASLDPRQTVGDSIMEP----------LRVHG------------------L 433
Query: 967 LEG----VRLSYLLEREEVGWDANLNWE--DILSLGEQQRLGMARLFFHKPKFGILDECT 1020
L G R+++LLER VG W S G++QR+ +AR PK I DE
Sbjct: 434 LPGKAAAARVAWLLER--VGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAV 491
Query: 1021 NATSVDVEEQ----LYRLAKDMGITFVTSSQRPALI 1052
+A V + Q L L +D GI ++ S A++
Sbjct: 492 SALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVV 527
|
Length = 623 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 7e-09
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCG 910
R ++F I PG+SL + GP+GSGKS++ R++ GL SG + D
Sbjct: 19 RNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDH- 77
Query: 911 IFYVPQRPYTCLGTLRDQI 929
+ Y+PQ G++ + I
Sbjct: 78 VGYLPQDDELFSGSIAENI 96
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 7e-09
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 164 DKSPQRNGSRNYFSEANYIEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKS 222
+K Q N +R + + + FS + VTP +++N++ K+E G L + G GSGKS
Sbjct: 411 EKIKQNNKARKQPNGDDGLFFSNFSLYVTP----VLKNISFKLEKGQLLAVAGSTGSGKS 466
Query: 223 SLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP 282
SL ++ G G I G I + PQ + GT++D +I+ L+ D+
Sbjct: 467 SLLMMIMGELEPSEGKIKHSG-------RISFSPQTSWIMPGTIKDNIIFGLSYDEY--- 516
Query: 283 LTHGGMVELLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAIL 339
++K LE + +P + + G+ LS G++ R+ +AR Y +L
Sbjct: 517 ----RYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLL 572
Query: 340 D 340
D
Sbjct: 573 D 573
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 7e-09
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 27/158 (17%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV-GSDLN---KEIF 253
+++++L + G + + GP+GSGK++L R++ GL SG I G +D+ + +
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVG 77
Query: 254 YVPQ-----RPYT-----AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 303
+V Q R T A G LR + + E+ H ELLK V L++L DR
Sbjct: 78 FVFQHYALFRHMTVFDNVAFG-LRVKPRSERPPEAEIRAKVH----ELLKLVQLDWLADR 132
Query: 304 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
YP + LS G++QR+ +AR +PK +LDE
Sbjct: 133 YPAQ--------LSGGQRQRVALARALAVEPKVLLLDE 162
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 7e-09
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 29/173 (16%)
Query: 213 ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP--QRPYTAV------- 263
+ GP+G GK++L R+L G SG I G ++ VP R V
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGE------DVTNVPPHLRHINMVFQSYALF 54
Query: 264 --GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQ 321
T+ + + + L + ++E L+ V LE DR P +LS G+Q
Sbjct: 55 PHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKP--------HQLSGGQQ 106
Query: 322 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM----GTSCITISH 370
QR+ +AR KPK +LDE SA+ + ++ +++ + G + + ++H
Sbjct: 107 QRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 8e-09
Identities = 65/249 (26%), Positives = 110/249 (44%), Gaps = 29/249 (11%)
Query: 148 DRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEP 207
+R+ ELM D Q+ G+ + ++ I+ V N++++N+ L V
Sbjct: 316 ERVFELM---------DGPRQQYGNDDRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPS 366
Query: 208 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG------VGSDLNKEIFYVPQRPYT 261
+ + G GSGKS+L +L G +PL G I G S L + + V Q P
Sbjct: 367 RGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVV 426
Query: 262 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE---LSL 318
T + L D ++ + + L+ V L L P G++ LS+
Sbjct: 427 LADTFLANVT--LGRD-----ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV 479
Query: 319 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE---RFCAKVRAMGTSCITISHRPALV 375
G++Q L +AR+ P+ ILDE T+ + + E+ + A VR T+ + I+HR + +
Sbjct: 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREH-TTLVVIAHRLSTI 538
Query: 376 AFHDVVLSL 384
D +L L
Sbjct: 539 VEADTILVL 547
|
Length = 592 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 9e-09
Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 26/200 (13%)
Query: 203 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN-KEIFYVPQR--- 258
L + G L + GPNG+GK++L R + GL P G + G + I YVPQR
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 259 ----PYTAVGTL---RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 311
P + T+ R I L + + + L+ V L L DR
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVAD---FAAVRDALRRVGLTELADRPV------ 111
Query: 312 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV---TTDMEERFCAKVRAMGTSCITI 368
ELS G++QR+ +AR +P +LDE + + T ++ ++ GT+ +
Sbjct: 112 --GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT 169
Query: 369 SHR-PALVAFHDVVLSLDGE 387
+H +A D V+ L+G
Sbjct: 170 THDLAQAMATCDRVVLLNGR 189
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 9e-09
Identities = 46/164 (28%), Positives = 68/164 (41%), Gaps = 41/164 (25%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG---------------HIAKP 242
+ ++L V G + + G NG+GK++L + + GL P SG A+
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARA 75
Query: 243 GVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP-LTSDQEVEPLTHGGMVELLKNV--DLEY 299
G+G YVP+ + I+P LT + E L G LE
Sbjct: 76 GIG--------YVPE----------GRRIFPELTVE---ENLLLGAYARRRAKRKARLER 114
Query: 300 LLDRYPPEKEI--NWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
+ + +P KE LS GEQQ L +AR +PK +LDE
Sbjct: 115 VYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 9e-09
Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 16/201 (7%)
Query: 195 NVLVENLTLKVEPGSNLLITGPNGSGKSS----LFRVL---GGLWPLVSGHIAKPGVGSD 247
++++ ++ + + G + I G G+GKSS LFR+ G + +IAK G+ D
Sbjct: 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGL-HD 1357
Query: 248 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD-LEYLLDRYPP 306
L +I +PQ P G+LR L P + + E + L V L LD
Sbjct: 1358 LRFKITIIPQDPVLFSGSLRMNL-DPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECA 1416
Query: 307 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSC- 365
E G+ LS+G++Q + +AR K K +LDE T+AV + + + +R C
Sbjct: 1417 EG----GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCT 1472
Query: 366 -ITISHRPALVAFHDVVLSLD 385
+TI+HR + + V+ LD
Sbjct: 1473 VLTIAHRLNTIMDYTRVIVLD 1493
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 51/210 (24%)
Query: 848 SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL------TKPSQHI 901
K + + ++ + G + GP+G+GKS++ +++ L GS+ K I
Sbjct: 14 FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVI 73
Query: 902 DEEAGSGCGIFYVPQRPYTCLGTLRDQIIY-PLSREEAELRALKLHGKGEKLVDTTNILD 960
D G V Q+P+ GT++D I Y P+ KGEK VD ++
Sbjct: 74 DLRRKIG----MVFQQPHLFEGTVKDNIEYGPML-------------KGEKNVD----VE 112
Query: 961 SYLKTILEGVRLSYLLEREEVGWDANLNWEDI--LSLGEQQRLGMARLFFHKPKFGILDE 1018
YL VG + D+ LS GE QR+ +AR + P+ +LDE
Sbjct: 113 YYLSI---------------VGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDE 157
Query: 1019 CTNA-----TSVDVEEQLYRLAKDMGITFV 1043
T+A T + +EE + +L M +T +
Sbjct: 158 PTSALDPTSTEI-IEELIVKLKNKMNLTVI 186
|
Length = 241 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 39/186 (20%)
Query: 849 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSG 908
Q+ + ++ E+ PGK L + GPNG+GKS++ RV+ GL G + + +
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK--------- 66
Query: 909 CGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 968
I YVPQ+ L PL+ R L+L +IL + L+
Sbjct: 67 LRIGYVPQK-------LYLDTTLPLTVN----RFLRLRPG----TKKEDILPA-----LK 106
Query: 969 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVE 1028
V+ +L++ LS GE QR+ +AR ++P+ +LDE T V+ +
Sbjct: 107 RVQAGHLIDAP----------MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQ 156
Query: 1029 EQLYRL 1034
LY L
Sbjct: 157 VALYDL 162
|
Length = 251 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 1e-08
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 316 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA---KVRAMGTSCITISHR 371
LS+GE+Q + +AR + ILDE T+A+T ER ++RA G + I ISHR
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 28/203 (13%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN---- 249
G ++V+ + + PGS + GPNGSGKS+L R+L G +G + G DL+
Sbjct: 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL--AGVDLHGLSR 70
Query: 250 ----KEIFYVPQRPYTAVG-TLRDQLIY---PLTSDQEVEPLTHGGMV-ELLKNVDLEYL 300
+ + V Q TAV T+RD + P S + +V L +L +L
Sbjct: 71 RARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL 130
Query: 301 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 360
DR + LS GE+QR+ +AR +PK +LDE T+ + + A VR
Sbjct: 131 ADR-------DM-STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRE 182
Query: 361 MGTSCITISHRPALVAFHDVVLS 383
+ + +T+ + A HD+ L+
Sbjct: 183 LAATGVTV-----VAALHDLNLA 200
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 1e-08
Identities = 69/276 (25%), Positives = 113/276 (40%), Gaps = 27/276 (9%)
Query: 127 FQSLGTLSISSRRLNRLSGYADRIHELMVISREL-SIEDKSPQRNGSRNYFSEANY---I 182
F TL I RL+++ + +++ E +ED P +
Sbjct: 278 FVGFATLLIG--RLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAV 335
Query: 183 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 242
EF V VE+++ + +PG + I GP G+GKS+L +L ++ SG I
Sbjct: 336 EFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILID 395
Query: 243 GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKN 294
G + L + I V Q ++ D + P +D+E M +
Sbjct: 396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEE--------MRAAAER 447
Query: 295 VDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 351
++R P + G+ +LS GE+QRL +AR P ILDE TSA+ + E
Sbjct: 448 AQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETE 507
Query: 352 ERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 385
+ A + + G + I+HR + V D +L D
Sbjct: 508 AKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFD 543
|
Length = 588 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 55/184 (29%), Positives = 80/184 (43%), Gaps = 40/184 (21%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913
+ ++F I PG+ + + G GSGKSS+ L L + SGS+ ID S G+
Sbjct: 21 KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL-----IDGVDISKIGLHD 75
Query: 914 -------VPQRPYTCLGTLRDQIIYPLSR-EEAEL-RALKLHGKGEKLVDTTNILDSYLK 964
+PQ P GT+R + P + EL +AL+ G E + LD+ +
Sbjct: 76 LRSRISIIPQDPVLFSGTIRSNLD-PFGEYSDEELWQALERVGLKEFVESLPGGLDTVV- 133
Query: 965 TILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATS 1024
EE G + LS+G++Q L +AR K K +LDE T S
Sbjct: 134 --------------EEGG--------ENLSVGQRQLLCLARALLRKSKILVLDEAT--AS 169
Query: 1025 VDVE 1028
VD E
Sbjct: 170 VDPE 173
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 2e-08
Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 35/181 (19%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913
+ + E+ G+ + + GP GSGKSS+ L G +SGS++ P I Y
Sbjct: 22 KDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-----------SIAY 70
Query: 914 VPQRPYTCLGTLRDQIIYPLSREEAEL-RALKLHGKGEKLVDTTNILDSYLKTILEGVRL 972
V Q P+ GT+R+ I++ +E + +K L IL T
Sbjct: 71 VSQEPWIQNGTIRENILFGKPFDEERYEKVIKACA----LEPDLEILPDGDLT------- 119
Query: 973 SYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLY 1032
E+G + +N LS G++QR+ +AR + +LD+ +A V ++
Sbjct: 120 -------EIG-EKGIN----LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIF 167
Query: 1033 R 1033
Sbjct: 168 E 168
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 18/46 (39%), Positives = 34/46 (73%)
Query: 850 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 895
++L L+F + G++L++TGPNGSGK+++ R++ GL P +G++
Sbjct: 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK 60
|
Length = 207 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 62/224 (27%), Positives = 95/224 (42%), Gaps = 39/224 (17%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS---LTKPSQHIDEEA----- 905
+ + + G+++ + GP+GSGKS++ VL GL SG L +P +DE+A
Sbjct: 27 KGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALR 86
Query: 906 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKT 965
G V Q +I L+ E AL L +GE D+ + L+
Sbjct: 87 ARHVGF--VFQS---------FHLIPNLTALENV--ALPLELRGESSADSRAGAKALLEA 133
Query: 966 ILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT----N 1021
+ G RL++ + LS GEQQR+ +AR F +P DE T
Sbjct: 134 VGLGKRLTHYPAQ--------------LSGGEQQRVALARAFAGRPDVLFADEPTGNLDR 179
Query: 1022 ATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGE 1065
AT + + L+ L ++ G T V + P L +LRL G
Sbjct: 180 ATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGR 223
|
Length = 228 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 315 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM---GTSCITISHR 371
+LS G++QR+ +AR P +LDE TS + ER +R + G + I ++H
Sbjct: 80 QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139
Query: 372 PALVAFH-DVVLSLD 385
P L D V+ L
Sbjct: 140 PELAELAADRVIVLK 154
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-08
Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 36/200 (18%)
Query: 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 896
I+ L + + LL ++ + PG+ + + G NG+GKS++ ++L G SG +T+
Sbjct: 4 ITLENLSLAYGDRPLL-ENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62
Query: 897 PSQHIDEEAGSGCGIFYVPQRPY-TCLGTLRDQII------YPLSREEAELRALKLHGKG 949
P G + Y+ Q P T+ D +I L E E AL
Sbjct: 63 PK---------GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDD 113
Query: 950 EKLVDTTNI---LDSY-----LKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRL 1001
E L + + LD + + L G+ D ++ LS G ++R+
Sbjct: 114 ELLAELEALLEELDGWTLEARAEEALLGLGFP--------DEDRPVS---SLSGGWRRRV 162
Query: 1002 GMARLFFHKPKFGILDECTN 1021
+AR +P +LDE TN
Sbjct: 163 ALARALLEEPDLLLLDEPTN 182
|
Length = 530 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 61/234 (26%), Positives = 93/234 (39%), Gaps = 38/234 (16%)
Query: 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 896
+ L + P+ K + + I PG+ + + GP+G+GKS++ R + L SGS+
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61
Query: 897 PSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQI--IYPLSREEAELRALK--LHGKGEKL 952
I + G L LR +I I+ L L+ LHG+
Sbjct: 62 EGTDITKLRGKK-------------LRKLRRRIGMIFQHYNLIERLTVLENVLHGR---- 104
Query: 953 VDTTNILDSYLKTI--LEGVRLSYLLEREEVGWDANLNWE-DILSLGEQQRLGMARLFFH 1009
+ S L + R LER VG D LS G+QQR+ +AR
Sbjct: 105 LGYKPTWRSLLGRFSEEDKERALSALER--VGLADKAYQRADQLSGGQQQRVAIARALAQ 162
Query: 1010 KPKFGILDECTN----ATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLEL 1059
+P + DE TS V + L R+ K+ GIT +I H ++L
Sbjct: 163 QPDLILADEPIASLDPKTSKQVMDYLKRINKEDGIT--------VIINLHQVDL 208
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 49/197 (24%)
Query: 196 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV-----GSDLNK 250
+++NL+L+++ G + + G +GSGKS+L ++L G G I GV L+
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSS 75
Query: 251 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI 310
I + QRPY TLR+
Sbjct: 76 LISVLNQRPYLFDTTLRN------------------------------------------ 93
Query: 311 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITI 368
N G S GE+QRL +AR+ +LDE T + E + + + + + I I
Sbjct: 94 NLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWI 153
Query: 369 SHRPALVAFHDVVLSLD 385
+H + D +L L+
Sbjct: 154 THHLTGIEHMDKILFLE 170
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 35/217 (16%)
Query: 175 YFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL 234
S IE GV + V+++ + L V G L I G +GSGKS+L R++ GL
Sbjct: 2 SASPEPLIEVRGV-TKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP 60
Query: 235 VSGHI-----AKPGVGSDLNKEIF----YVPQRP--YTAVGTLRDQLIYPLTSDQEV-EP 282
G I P + + EI + Q+ ++++ T+ + + +PL ++ E
Sbjct: 61 DKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSL-TVFENVAFPLREHTKLPES 119
Query: 283 LTHGGMVELLKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMAR--------LFYHK 333
L ++ L+ V L D YP ELS G ++R+ +AR LF +
Sbjct: 120 LIRELVLMKLELVGLRGAAADLYP--------SELSGGMRKRVALARAIALDPELLFLDE 171
Query: 334 PKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISH 370
P + LD ++ V ++ A+G + I ++H
Sbjct: 172 P-TSGLDPISAGVIDELIREL---NDALGLTVIMVTH 204
|
Length = 263 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 2e-08
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 51/174 (29%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-------------- 239
G +VE+++L V G + + GPNG+GK++ F ++ G+ P +G+I
Sbjct: 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA 74
Query: 240 -AKPGVGSDLNKEIFYVPQRP-----------YTAVGTLRDQLIYPLTSDQEVEPLTHGG 287
A+ G+G Y+PQ AV +RD L+++Q +
Sbjct: 75 RARRGIG--------YLPQEASIFRRLSVYDNLMAVLQIRDD----LSAEQREDR----- 117
Query: 288 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
EL++ +E+L D + G LS GE++R+ +AR PKF +LDE
Sbjct: 118 ANELMEEFHIEHLRD--------SMGQSLSGGERRRVEIARALAANPKFILLDE 163
|
Length = 241 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 3e-08
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIF 912
++ I PG+ + + GP+GSGKS++ ++L L+ SG + + +D E+ I
Sbjct: 21 VSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKN-IA 79
Query: 913 YVPQRPYTCL--GTLRDQII 930
YVPQ P+ L GT+R+ I+
Sbjct: 80 YVPQDPF--LFSGTIRENIL 97
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 53/224 (23%), Positives = 88/224 (39%), Gaps = 55/224 (24%)
Query: 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 896
+ + ++L + + G+ + + GP+G GKS++ R++ GL SG +
Sbjct: 4 LEIEGVSKSFGGVEVL-EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLL 62
Query: 897 PSQHIDEEAGSGCGIFYVPQRPYTCLG--TLRDQIIYPL-----SREEAELRALKLHGKG 949
+ G G I YV Q L T+ D + L S+ EA RA +L
Sbjct: 63 DGR---PVTGPGPDIGYVFQE-DALLPWLTVLDNVALGLELRGKSKAEARERAKEL---- 114
Query: 950 EKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFH 1009
LE V L+ ++ + LS G +QR+ +AR
Sbjct: 115 -----------------LELVGLAGFEDK----------YPHQLSGGMRQRVAIARALAT 147
Query: 1010 KPK-------FGILDECTNATSVDVEEQLYRLAKDMGIT--FVT 1044
+PK FG LD T +++++L RL ++ T VT
Sbjct: 148 RPKLLLLDEPFGALDA---LTREELQDELLRLWEETRKTVLLVT 188
|
Length = 248 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 3e-08
Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 27/222 (12%)
Query: 197 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-------AKPGVGSDLN 249
++ L+ V P + + G G+GKSS+ L + L G I AK G+ +DL
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGL-TDLR 1309
Query: 250 KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP--PE 307
+ + +PQ P GT+R I P + + + E L+ ++ ++DR P +
Sbjct: 1310 RVLSIIPQSPVLFSGTVRFN-IDPFSEHND------ADLWEALERAHIKDVIDRNPFGLD 1362
Query: 308 KEINWGDE-LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSC- 365
E++ G E S+G++Q L +AR + K +LDE T++V + +R SC
Sbjct: 1363 AEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCT 1422
Query: 366 -ITISHRPALVAFHDVVLSLDGEGEWRVHD------KRDGSS 400
+ I+HR + D +L L G+ +D RD S+
Sbjct: 1423 MLVIAHRLNTIIDCDKILVLSS-GQVLEYDSPQELLSRDTSA 1463
|
Length = 1495 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 3e-08
Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 64/162 (39%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
IE + T G +L+++++L + PG + + G NG+GKS+L +++ G
Sbjct: 1 IELENLSK-TYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG----------- 48
Query: 242 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 301
E+EP G+V V + Y
Sbjct: 49 -------------------------------------ELEP--DEGIVTWGSTVKIGYF- 68
Query: 302 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 343
++LS GE+ RL +A+L P +LDE T
Sbjct: 69 ------------EQLSGGEKMRLALAKLLLENPNLLLLDEPT 98
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 4e-08
Identities = 60/249 (24%), Positives = 104/249 (41%), Gaps = 54/249 (21%)
Query: 184 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---------- 233
F GVK + + + L+V PG + + G NG+GKS+L ++L G++P
Sbjct: 11 FGGVKAL--------DGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYW 62
Query: 234 ----LVSGHIA---KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP--LTSDQEVEPLT 284
L + +I + G+ +++E+ VP+ L +++ P +
Sbjct: 63 SGSPLKASNIRDTERAGI-VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNA----- 116
Query: 285 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 344
M KN+ E LD + + + G+QQ + +A+ + + ILDE +S
Sbjct: 117 ---MYLRAKNLLRELQLDADNVTRPVG---DYGGGQQQLVEIAKALNKQARLLILDEPSS 170
Query: 345 AVTTDMEERFCAKVR---AMGTSCITISHRPALV-AFHDVVLSLDGEGEWRVHDKRDGSS 400
++T E +R A G +C+ ISH+ V A D + + RDG
Sbjct: 171 SLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVI-----------RDGQH 219
Query: 401 VVTKSGINM 409
V TK M
Sbjct: 220 VATKDMSTM 228
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 5e-08
Identities = 50/186 (26%), Positives = 75/186 (40%), Gaps = 48/186 (25%)
Query: 855 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 914
L+F + G++L VTGPNGSGK+++ R+L GL P ++G + +D + S
Sbjct: 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDS------- 70
Query: 915 PQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY 974
R LG H G K ++LE +R +
Sbjct: 71 IARGLLYLG----------------------HAPGIKTT----------LSVLENLRFWH 98
Query: 975 LLEREEVGWDA----NLN-WEDI----LSLGEQQRLGMARLFFHKPKFGILDECTNATSV 1025
+E +A LN +ED LS G+Q+R+ +ARL ILDE T A
Sbjct: 99 ADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158
Query: 1026 DVEEQL 1031
+
Sbjct: 159 AGVARF 164
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 5e-08
Identities = 53/214 (24%), Positives = 83/214 (38%), Gaps = 44/214 (20%)
Query: 196 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 255
V++++L L +E G I G +GSGKS+L ++G L SG + G +
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNG---QETPPLNSK 68
Query: 256 PQRPYTAVGTLRDQLIY-----PLTSDQEVE-----PLTHGG---------MVELLKNVD 296
+ R++L Y L ++ VE L + E L+ V
Sbjct: 69 KASKF-----RREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVG 123
Query: 297 LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER--- 353
L L + ELS GEQQR+ +AR P + DE T ++ D + R
Sbjct: 124 LNLKLKQKI--------YELSGGEQQRVALARAILKPPPLILADEPTGSL--DPKNRDEV 173
Query: 354 ---FCAKVRAMGTSCITISHRPALVAFHDVVLSL 384
G + I ++H P + D V+ L
Sbjct: 174 LDLLLELNDE-GKTIIIVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 50/192 (26%), Positives = 74/192 (38%), Gaps = 38/192 (19%)
Query: 165 KSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSL 224
K P GS N+F V+ +++ ++ G + G NG+GKS+
Sbjct: 18 KEPGLKGSLNHFFHRKERSIEAVQ-----------DISFEIPKGEIVGFLGANGAGKSTT 66
Query: 225 FRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEP 282
++L GL SG + G +E + R V + QL + P EV
Sbjct: 67 LKMLTGLLLPTSGKVRVNGKDPFRRREEY---LRSIGLVMGQKLQLWWDLPALDSLEVLK 123
Query: 283 L-----------THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331
L + E+L DLE L ++P K LSLG++ R +A
Sbjct: 124 LIYEIPDDEFAERLDFLTEIL---DLEGFL-KWPVRK-------LSLGQRMRAELAAALL 172
Query: 332 HKPKFAILDECT 343
H PK LDE T
Sbjct: 173 HPPKVLFLDEPT 184
|
Length = 325 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 6e-08
Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 32/203 (15%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913
++F + G+ + GPNG+GK++ R++ G+ SG + + +D A + G Y
Sbjct: 17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIG--Y 74
Query: 914 VPQ-RPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 972
+P+ R + DQ++Y A+L+ LK R+
Sbjct: 75 LPEERGLYPKMKVIDQLVY-----LAQLKGLKKEEARR--------------------RI 109
Query: 973 SYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA---TSVDVEE 1029
LER E+ AN E+ LS G QQ++ H P+ ILDE + +V++ +
Sbjct: 110 DEWLERLELSEYANKRVEE-LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLK 168
Query: 1030 QLYRLAKDMGITFVTSSQRPALI 1052
+ R G T + S+ + L+
Sbjct: 169 DVIRELARAGKTVILSTHQMELV 191
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 6e-08
Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 68/223 (30%)
Query: 183 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 242
F GVK + +N++LKV G + + G NG+GKS+L +VL G++P G
Sbjct: 14 TFGGVKAL--------DNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP--HG----- 58
Query: 243 GVGSDLNKEIFYVPQRPYTAVGTLRDQ------LIYPLTSDQEV---------------E 281
EI + + A +RD +I+ QE+
Sbjct: 59 ----TYEGEIIFEGE-ELQA-SNIRDTERAGIAIIH-----QELALVKELSVLENIFLGN 107
Query: 282 PLTHGGMV----------ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331
+T GG++ +LL + L+ ++ P L LG+QQ + +A+
Sbjct: 108 EITPGGIMDYDAMYLRAQKLLAQLKLD--INPATPVG------NLGLGQQQLVEIAKALN 159
Query: 332 HKPKFAILDECTSAVT---TDMEERFCAKVRAMGTSCITISHR 371
+ + ILDE T+++T T + ++A G +CI ISH+
Sbjct: 160 KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHK 202
|
Length = 506 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 7e-08
Identities = 53/199 (26%), Positives = 87/199 (43%), Gaps = 32/199 (16%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913
++FE+ PG+ + GPNG+GK++ FR++ GL G +T + +E + G Y
Sbjct: 19 DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG--Y 76
Query: 914 VP-QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 972
+P +R T+ DQ+ Y L+ L G + + +L
Sbjct: 77 LPEERGLYPKMTVEDQLKY-LAE---------LKGMPKAEIQK---------------KL 111
Query: 973 SYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE-CTNATSVDVE--E 1029
LER E+ ++ LS G QQ++ H+P+ ILDE + V+VE +
Sbjct: 112 QAWLERLEIVGKKTKKIKE-LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLK 170
Query: 1030 QLYRLAKDMGITFVTSSQR 1048
K+ G T + SS R
Sbjct: 171 DAIFELKEEGATIIFSSHR 189
|
Length = 300 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 8e-08
Identities = 58/218 (26%), Positives = 91/218 (41%), Gaps = 59/218 (27%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC---- 909
L+ + PG+ L + GP+G GK+++ R++ GL SG + ID +G
Sbjct: 17 DDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL-----IDGRDVTGVPPER 71
Query: 910 -GIFYVPQRP--YTCLGTLRDQIIYPL-----SREEAELRALKLHGKGEKLVDTTNILDS 961
I V Q + L T+ + I + L + E R +
Sbjct: 72 RNIGMVFQDYALFPHL-TVAENIAFGLKLRGVPKAEIRARVRE----------------- 113
Query: 962 YLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1021
+LE V L LL R + LS G+QQR+ +AR +P +LDE +
Sbjct: 114 ----LLELVGLEGLLNR----------YPHELSGGQQQRVALARALAREPSLLLLDEPLS 159
Query: 1022 ATSVDVE------EQLYRLAKDMGIT--FVTSSQRPAL 1051
A +D + E+L L +++GIT +VT Q AL
Sbjct: 160 A--LDAKLREELREELKELQRELGITTIYVTHDQEEAL 195
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 8e-08
Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 67/196 (34%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCG-IFYV 914
++ + G+ + GPNG+GK+++ +++ GL SG + + I +E I Y+
Sbjct: 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYL 78
Query: 915 PQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY 974
P+ P L L T+ E ++LS
Sbjct: 79 PEEPS---------------------------------------LYENL-TVRENLKLS- 97
Query: 975 LLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA----TSVDVEEQ 1030
G +QRL +A+ H P+ ILDE T+ + + E
Sbjct: 98 --------------------GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL 137
Query: 1031 LYRLAKDMGITFVTSS 1046
L L K+ G T + SS
Sbjct: 138 LRELKKE-GKTILLSS 152
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 8e-08
Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 46/204 (22%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHID------EEAG--- 906
+T + G++L++ GP+G+GKSS+ RVL L SG+L H D ++A
Sbjct: 21 ITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80
Query: 907 -SGCGIFYVPQRPYTCLGTLRDQIIYP-----LSREEAELRALKLHGKGEKLVDTTNILD 960
G+ + + L + I P LS+++A RA KL
Sbjct: 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKL--------------- 125
Query: 961 SYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1020
L+ +RL +R + LS G+QQR+ +AR +P+ + DE T
Sbjct: 126 ------LKRLRLKPYADR----------YPLHLSGGQQQRVAIARALMMEPQVLLFDEPT 169
Query: 1021 NATSVDVEEQLYRLAKDMGITFVT 1044
A ++ Q+ + K++ T +T
Sbjct: 170 AALDPEITAQIVSIIKELAETGIT 193
|
Length = 242 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 8e-08
Identities = 57/199 (28%), Positives = 86/199 (43%), Gaps = 32/199 (16%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD---------L 248
VE ++ + PG L + G +GSGKS+ R L L G I G D L
Sbjct: 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQAL 399
Query: 249 NKEIFYVPQRPYTAVG---TLRDQLIYPLTSDQEVEPLTHGG-----MVELLKNVDLEYL 300
++I ++ Q PY ++ T+ D ++ PL V L G + LL+ V L
Sbjct: 400 RRDIQFIFQDPYASLDPRQTVGDSIMEPL----RVHGLLPGKAAAARVAWLLERVGLL-- 453
Query: 301 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-- 358
PE + E S G++QR+ +AR PK I DE SA+ + + +
Sbjct: 454 -----PEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD 508
Query: 359 --RAMGTSCITISHRPALV 375
R G + + ISH A+V
Sbjct: 509 LQRDFGIAYLFISHDMAVV 527
|
Length = 623 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 8e-08
Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 29/192 (15%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 253
G V++++L + G + G +G GKS+L R+L G +G I GV DL+
Sbjct: 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGV--DLS---- 84
Query: 254 YVP--QRPYTAV---------GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD 302
+VP QRP + T+ + + L D+ + + E+L V ++
Sbjct: 85 HVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK 144
Query: 303 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV---- 358
R P +LS G++QR+ +AR +PK +LDE A+ + +R +V
Sbjct: 145 RKP--------HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDIL 196
Query: 359 RAMGTSCITISH 370
+G +C+ ++H
Sbjct: 197 ERVGVTCVMVTH 208
|
Length = 377 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 8e-08
Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 29/191 (15%)
Query: 196 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 255
V+ ++ V+PG + GPNG+GK++ R+L GL +G G D+ KE
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGF--DVVKEPAEA 76
Query: 256 PQRPYTAVGTLRDQL-IYP-LTSDQEVEPLT----------HGGMVELLKNVDLEYLLDR 303
+R +G + D +Y LT+ + +E + EL + +E LLDR
Sbjct: 77 RRR----LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR 132
Query: 304 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA---VTTDMEERFCAKVRA 360
S G +Q++ +AR H P +LDE T+ + T F ++RA
Sbjct: 133 R--------VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA 184
Query: 361 MGTSCITISHR 371
+G + +H
Sbjct: 185 LGKCILFSTHI 195
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 9e-08
Identities = 55/174 (31%), Positives = 79/174 (45%), Gaps = 39/174 (22%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSD 247
G L+++++L + PG + I GPNG+GKS+L R L G SG + G ++
Sbjct: 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAE 73
Query: 248 LNKEIFYVPQR-----PYTA---VGTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLE 298
L + +PQ P+T V R P S E + L L VDL
Sbjct: 74 LARRRAVLPQHSSLSFPFTVEEVVAMGR----APHGLSRAEDDALVA----AALAQVDLA 125
Query: 299 YLLDR-YPPEKEINWGDELSLGEQQRLGMARLF------YHKPKFAILDECTSA 345
+L R YP +LS GEQQR+ +AR+ P++ +LDE TSA
Sbjct: 126 HLAGRDYP---------QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSA 170
|
Length = 258 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 9e-08
Identities = 48/153 (31%), Positives = 68/153 (44%), Gaps = 23/153 (15%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKPGVGSDLNKEIFY 254
V N++L V S + GPNG+GKS+L +++ G+ SG I P DL+K
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSL 75
Query: 255 VPQRPYTAVGTLRDQLIYPLT----SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI 310
+ P T R+ L T D ++ E+L VDL + K
Sbjct: 76 IESPPLYENLTARENLKVHTTLLGLPDSRID--------EVLNIVDLTNTGKK--KAK-- 123
Query: 311 NWGDELSLGEQQRLGMARLFYHKPKFAILDECT 343
+ SLG +QRLG+A + PK ILDE T
Sbjct: 124 ----QFSLGMKQRLGIAIALLNHPKLLILDEPT 152
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 1e-07
Identities = 57/225 (25%), Positives = 96/225 (42%), Gaps = 49/225 (21%)
Query: 850 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAG 906
++L L+F + G+ + + GPNG+GK+S+ R+L GL +G + +P + +E
Sbjct: 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYH 73
Query: 907 SGCGIFYVPQRPYTCLGTLRDQIIYP-LSREEAELR-ALKLHGKGEKLVDTTNILDSYLK 964
+ Y+ +P G I L+ E LR +LHG D + +
Sbjct: 74 Q--DLLYLGHQP----G------IKTELTALE-NLRFYQRLHG----PGDDEALWE---- 112
Query: 965 TILEGVRLSYLLEREEVGWDANLNWEDI----LSLGEQQRLGMARLFFHKPKFGILDECT 1020
L V L+ +ED+ LS G+Q+R+ +ARL+ + ILDE
Sbjct: 113 -ALAQVGLA--------------GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF 157
Query: 1021 NATSVDVEEQLYRL----AKDMGITFVTSSQRPALIPFHSLELRL 1061
A +L L A+ G+ +T+ Q + +LRL
Sbjct: 158 TAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202
|
Length = 204 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 1e-07
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 34/160 (21%)
Query: 200 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKE-------- 251
++L+V G + G NG GK++L + L GL P+ SG I G D+ K
Sbjct: 18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGE--DITKLPPHERARA 75
Query: 252 -IFYVPQRPYTAVGTLRDQLIYPLTSDQE-----VEPLTHGGMVELLKNVDLEYLLDRYP 305
I YVPQ + I+P + +E + L + + + + + +P
Sbjct: 76 GIAYVPQ----------GREIFPRLTVEENLLTGLAALPRRS-----RKIP-DEIYELFP 119
Query: 306 PEKEI--NWGDELSLGEQQRLGMARLFYHKPKFAILDECT 343
KE+ G +LS G+QQ+L +AR +PK +LDE T
Sbjct: 120 VLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 1e-07
Identities = 55/256 (21%), Positives = 107/256 (41%), Gaps = 35/256 (13%)
Query: 95 FFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELM 154
G+L P + + LR +++ +L + ++S +R+ L +RI
Sbjct: 547 LLGGDLTP-ARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERI---- 601
Query: 155 VISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLIT 214
+++ ++ +P + YFS K PT + ++ L++ GS + I
Sbjct: 602 -LAQNPPLQPGAPAISIKNGYFS-------WDSKTSKPT----LSDINLEIPVGSLVAIV 649
Query: 215 GPNGSGKSSLFR-VLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP 273
G G GK+SL +LG L + + + + YVPQ + T+R+ +++
Sbjct: 650 GGTGEGKTSLISAMLGELSHAETSSV-------VIRGSVAYVPQVSWIFNATVRENILF- 701
Query: 274 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE---LSLGEQQRLGMARLF 330
+ E + +++ L++ LD P G+ +S G++QR+ MAR
Sbjct: 702 ---GSDFESERYWRAIDV---TALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV 755
Query: 331 YHKPKFAILDECTSAV 346
Y I D+ SA+
Sbjct: 756 YSNSDIYIFDDPLSAL 771
|
Length = 1495 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 1e-07
Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 37/213 (17%)
Query: 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 239
+E G+ P G V ++++L V+ G + G NG+GKS+L ++L GL+ SG I
Sbjct: 3 PALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 240 ------AKPGVGSDLNKE-IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELL 292
+ D + I V Q L+ LT E + G
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHF---------MLVPTLTV---AENIILGLEPSKG 109
Query: 293 KNVD-------LEYLLDRY----PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
+D ++ L +RY P+ ++ +LS+GEQQR+ + + Y + ILDE
Sbjct: 110 GLIDRRQARARIKELSERYGLPVDPDAKVA---DLSVGEQQRVEILKALYRGARLLILDE 166
Query: 342 CTSAVTTDMEERFCAKVR---AMGTSCITISHR 371
T+ +T + +R A G + I I+H+
Sbjct: 167 PTAVLTPQEADELFEILRRLAAEGKTIIFITHK 199
|
Length = 501 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 257
+++++L ++ G + + GP+G+GKS+L R++ GL +G I + + ++ +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR---LNGRVLFDVSNLAV 74
Query: 258 RPYTAVG------------TLRDQLIYPLT------SDQEVEPLTHGGMVELLKNVDLEY 299
R VG T+ D + + L S+ E+ ELL+ V LE
Sbjct: 75 RD-RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE----ELLRLVQLEG 129
Query: 300 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA----VTTDMEERFC 355
L DRYP + LS G++QR+ +AR +PK +LDE A V ++ R+
Sbjct: 130 LADRYPAQ--------LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL-RRWL 180
Query: 356 AKVRA-MGTSCITISHRPA 373
K+ +G + + ++H
Sbjct: 181 RKLHDRLGVTTVFVTHDQE 199
|
Length = 345 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 1e-07
Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 50/196 (25%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVG-SDLNK 250
G +++ + L ++ G + GPNGSGKS+L + + G + + G I G +DL
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP 71
Query: 251 E------IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRY 304
E IF Q P E+ + + L+ V+
Sbjct: 72 EERARLGIFLAFQYPP------------------EIPGVK---NADFLRYVN-------- 102
Query: 305 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD---MEERFCAKVRAM 361
+ S GE++R + +L +P AILDE S + D + K+R
Sbjct: 103 ---------EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE 153
Query: 362 GTSCITISHRPALVAF 377
G S + I+H L+ +
Sbjct: 154 GKSVLIITHYQRLLDY 169
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 42/193 (21%), Positives = 72/193 (37%), Gaps = 44/193 (22%)
Query: 177 SEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 236
+ + G +E+++L + G +++ GP+G GK++L ++ G
Sbjct: 6 VSHLSLSYEGK------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR 59
Query: 237 GHIAKPGVGSDLNKEIFYVPQRPYTAVGTLR------DQLIYPLTSDQEVE-PLTHGGM- 288
G I G R G R + L+ L V L G+
Sbjct: 60 GSIQLNG--------------RRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIE 105
Query: 289 --------VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILD 340
++L V LE +Y W +LS G +QR+G+AR +P+ +LD
Sbjct: 106 KAQRREIAHQMLALVGLEGAEHKYI------W--QLSGGMRQRVGIARALAVEPQLLLLD 157
Query: 341 ECTSAVTTDMEER 353
E A+ E+
Sbjct: 158 EPFGALDALTREQ 170
|
Length = 259 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 28/163 (17%)
Query: 200 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HIA----------KPGVGSD 247
++TL G L++ GP+G+GKSSL RVL L SG +IA +
Sbjct: 20 DITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79
Query: 248 LNKEIFYVPQR----PYTAVGTLRDQLI-YPLTSDQEVEPLTHGGMVELLKNVDLEYLLD 302
L + + V Q+ P+ T++ LI P + +LL+ + L+ D
Sbjct: 80 LRRNVGMVFQQYNLWPHL---TVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD 136
Query: 303 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
R+P LS G+QQR+ +AR +P+ + DE T+A
Sbjct: 137 RFPLH--------LSGGQQQRVAIARALMMEPQVLLFDEPTAA 171
|
Length = 242 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 61/213 (28%), Positives = 95/213 (44%), Gaps = 32/213 (15%)
Query: 197 LVENLTLKVEPGSNLLITGPNGSGKS-SLFRVLGGLWP---LVSGHIAKPGVGSDLN--- 249
LV++L L ++ G L + G +GSGKS + +LG L P SG I G L
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGR--PLLPLS 58
Query: 250 ---KEIFYVPQRPYTA---VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL---EYL 300
+ I + Q P TA + T+ + I L S ++ ++E L+ V L E +
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEV 118
Query: 301 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 360
L +YP +LS G QR+ +A +P F I DE T+ + + R +R
Sbjct: 119 LKKYP--------FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 361 M----GTSCITISHRPALVAF--HDVVLSLDGE 387
+ GT + I+H +VA +V + DG
Sbjct: 171 LRQLFGTGILLITHDLGVVARIADEVAVMDDGR 203
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDM---GITFVTSSQRP 1049
LS G++QR+ +AR P +LDE T+ E+L L +++ G T + + P
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
Query: 1050 ALIPFHSLE-LRLIDGE 1065
L + + L DG+
Sbjct: 141 ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCG 910
++ + G+ + + GPNGSGKS++ R + GL SG + K + E
Sbjct: 16 DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRR-R 74
Query: 911 IFYVPQ 916
I YVPQ
Sbjct: 75 IGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 40/212 (18%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
IE G+ + G +++ + L V G L I GP+GSGKS+L R++ GL SG +
Sbjct: 1 IELRGL-TKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI 59
Query: 242 PG--VGSDLNKEIFYVPQRPYTAVG------------TLRDQLIYPLT-----SDQEVEP 282
G + E++ + +R +G T+ + + +PL S++E+
Sbjct: 60 DGEDISGLSEAELYRLRRR----MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIRE 115
Query: 283 LTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 342
+ +E L+ V L D YP ELS G ++R+ +AR P+ + DE
Sbjct: 116 IV----LEKLEAVGLRGAEDLYP--------AELSGGMKKRVALARALALDPELLLYDEP 163
Query: 343 TSA---VTTDMEERFCAKV-RAMGTSCITISH 370
T+ + + + + + + +G + I ++H
Sbjct: 164 TAGLDPIASGVIDDLIRSLKKELGLTSIMVTH 195
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-07
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 36/190 (18%)
Query: 202 TLKVEPGSN-----LLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP 256
L+VE G + I GPNG GK++ ++L G+ KP GS+ + ++ Y P
Sbjct: 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGV--------IKPDEGSEEDLKVSYKP 407
Query: 257 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE 315
Q GT+ L+ E++K ++LE LL+R DE
Sbjct: 408 QYISPDYDGTVE-DLLRSAIRSAFGSSYFK---TEIVKPLNLEDLLERPV--------DE 455
Query: 316 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF-CAKV--RAMGTSCITISHRP 372
LS GE QR+ +A + +LDE ++ + D+E+R AKV R + + T
Sbjct: 456 LSGGELQRVAIAAALSREADLYLLDEPSAYL--DVEQRIIVAKVIRRFIENNEKT----- 508
Query: 373 ALVAFHDVVL 382
ALV HD+ +
Sbjct: 509 ALVVDHDIYM 518
|
Length = 591 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 45/217 (20%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKE----- 251
+ N++L ++ G + + G +G GKS+L R+L GL G+++ G + LN+
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAF 87
Query: 252 ---IFYVPQRPYTAVG---TLRDQLIYP---LTSDQEVEPLTHGGMVELLKNVDL-EYLL 301
I V Q +AV T+R+ + P L S + E L E+L+ VDL + +L
Sbjct: 88 RRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARAS--EMLRAVDLDDSVL 145
Query: 302 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS-----------AVTTDM 350
D+ PP +LS G+ QR+ +AR +PK ILDE S + +
Sbjct: 146 DKRPP--------QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKL 197
Query: 351 EERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDG 386
+++F GT+C+ I+H LV F V+ +D
Sbjct: 198 QQQF-------GTACLFITHDLRLVERFCQRVMVMDN 227
|
Length = 268 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 41/192 (21%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 257
++ L V G + + GP+GSGKS++ R+L L P+ G I G ++++++P
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEG------EQLYHMPG 69
Query: 258 R-----PYTA--VGTLRDQL--------IYPLTS--DQEVE-PLTHGGM---------VE 290
R P + +R+++ ++P + D E P+ GM +E
Sbjct: 70 RNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAME 129
Query: 291 LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 350
LL V L D P +LS G+QQR+ +AR +PK + DE TSA+ ++
Sbjct: 130 LLDMVGLADKADHMPA--------QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPEL 181
Query: 351 EERFCAKVRAMG 362
+R +
Sbjct: 182 VGEVLNVIRRLA 193
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 3e-07
Identities = 50/217 (23%), Positives = 86/217 (39%), Gaps = 56/217 (25%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC---- 909
++ +I G+ + + GP+G GK+++ R++ G SG + +D E +
Sbjct: 22 DDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL-----LDGEDITDVPPEK 76
Query: 910 -GIFYVPQRPYTCLG--TLRDQIIYPL------SREEAELRALKLHGKGEKLVDTTNILD 960
I V Q Y T+ + + + L + E + R +
Sbjct: 77 RPIGMVFQS-YALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA--------------- 120
Query: 961 SYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1020
LE V L +R LS G+QQR+ +AR +PK +LDE
Sbjct: 121 ------LELVGLEGFADR----------KPHQLSGGQQQRVALARALVPEPKVLLLDEPL 164
Query: 1021 NA----TSVDVEEQLYRLAKDMGIT--FVTSSQRPAL 1051
+A + ++L L +++GIT +VT Q AL
Sbjct: 165 SALDAKLREQMRKELKELQRELGITFVYVTHDQEEAL 201
|
Length = 352 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 29/192 (15%)
Query: 203 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN------------K 250
L V+ G + + G +GSGKS+L +L GL SG ++ VG L+ K
Sbjct: 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSL--VGQPLHQMDEEARAKLRAK 88
Query: 251 EIFYVPQRPYTAVGTL--RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEK 308
+ +V Q + + TL + + P E + G LL+ + L LD P +
Sbjct: 89 HVGFVFQS-FMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQ- 146
Query: 309 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV----RAMGTS 364
LS GEQQR+ +AR F +P DE T + ++ + R GT+
Sbjct: 147 -------LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTT 199
Query: 365 CITISHRPALVA 376
I ++H L A
Sbjct: 200 LILVTHDLQLAA 211
|
Length = 228 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 60/209 (28%), Positives = 95/209 (45%), Gaps = 29/209 (13%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKE 251
+ +++ V+ G L I G NGSGKS+ R++ GL SG I G D+ +
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82
Query: 252 IFYVPQRPYTA-VG-TLRDQLIYPLTSDQEVEPLTHGGMV----ELLKNVDLEYLLDRYP 305
I V Q P VG T+ D + + L E + + H M E L+ V ++ +R P
Sbjct: 83 IGMVFQNPDNQFVGATVEDDVAFGL----ENKGIPHEEMKERVNEALELVGMQDFKEREP 138
Query: 306 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM---- 361
LS G++QR+ +A +PK ILDE TS + + ++ +
Sbjct: 139 A--------RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDY 190
Query: 362 GTSCITISHRPALVAFHDVVLSL-DGEGE 389
+ I+I+H VA D VL + +G+ E
Sbjct: 191 QMTVISITHDLDEVALSDRVLVMKNGQVE 219
|
Length = 279 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 54/211 (25%), Positives = 84/211 (39%), Gaps = 42/211 (19%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-------------- 239
G V +++L+V PG + + GPNG+GK++LF ++ G + SG +
Sbjct: 16 GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHR 75
Query: 240 -AKPGVG-SDLNKEIF---------YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM 288
A+ G+ + +F V L L P +E E
Sbjct: 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARL---GLSGLLGRPRARKEEREARERAR- 131
Query: 289 VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTT 348
ELL+ V L L DR LS G+Q+RL +AR +PK +LDE + +
Sbjct: 132 -ELLEFVGLGELADRP--------AGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNP 182
Query: 349 DMEERFCAKVRA----MGTSCITISHRPALV 375
+ E +R G + + I H LV
Sbjct: 183 EETEELAELIRELRDRGGVTILLIEHDMKLV 213
|
Length = 250 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 63/240 (26%), Positives = 106/240 (44%), Gaps = 28/240 (11%)
Query: 162 IEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVEN-LTLKVEPGSNLLITGPNGSG 220
IE SP +A + F GV++ G LV ++ ++ P + I G GSG
Sbjct: 1291 IEPASPTSAAPHPV--QAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSG 1348
Query: 221 KSSLFRVLGGLWPLVSGHIAKPG--VGS----DLNKEIFYVPQRPYTAVGTLRDQLIYPL 274
KS+L + + G I G +G+ +L ++ +PQ P GT+R
Sbjct: 1349 KSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVR------- 1401
Query: 275 TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE------INWGDELSLGEQQRLGMAR 328
Q V+P E+ ++L L +R E E + G S+G++Q + MAR
Sbjct: 1402 ---QNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMAR 1458
Query: 329 LFYHK-PKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 385
K F ++DE T+ + ++ + A V + + ITI+HR VA +D ++ +D
Sbjct: 1459 ALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMD 1518
|
Length = 1560 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 3e-07
Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 48/212 (22%)
Query: 845 ITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE 904
+ P +K + + ++ PG + V G NG+GKS++ R++ G+ + + E
Sbjct: 13 VVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-----------DKEFNGE 61
Query: 905 A--GSGCGIFYVPQRPY-----TCLGTLR-------------DQIIYPLSREEAELRAL- 943
A G + Y+PQ P T + ++I + +A++ AL
Sbjct: 62 ARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALL 121
Query: 944 KLHGKGEKLVDTTNI--LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRL 1001
+ ++++D + LD L+ ++ +R WDA++ LS GE++R+
Sbjct: 122 AEQAELQEIIDAADAWDLDRKLEIAMDALRCP--------PWDADVT---KLSGGERRRV 170
Query: 1002 GMARLFFHKPKFGILDECTN---ATSVDVEEQ 1030
+ RL KP +LDE TN A SV EQ
Sbjct: 171 ALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQ 202
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 4e-07
Identities = 49/210 (23%), Positives = 80/210 (38%), Gaps = 60/210 (28%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGI 911
++ + G+ + + GP+G GKS++ R++ GL SG + +D E G G
Sbjct: 21 EDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVL-----VDGEPVTGPGPDR 75
Query: 912 FYVPQRPYTCLG--TLRDQIIYPL-----SREEAELRALKLHGKGEKLVDTTNILDSYLK 964
YV Q+ L T+ D + L + EA RA + L+
Sbjct: 76 GYVFQQ-DALLPWLTVLDNVALGLELQGVPKAEARERA-----------------EELLE 117
Query: 965 TI-LEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPK-------FGIL 1016
+ L G +Y + LS G +QR+ +AR P F L
Sbjct: 118 LVGLSGFENAYPHQ---------------LSGGMRQRVALARALAVDPDVLLLDEPFSAL 162
Query: 1017 DECTNATSVDVEEQLYRLAKDMGIT--FVT 1044
D T ++E+L + ++ G T VT
Sbjct: 163 DALTRE---QLQEELLDIWRETGKTVLLVT 189
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 19/194 (9%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--DLNK----E 251
++N++L V G + ++GP+G+GKS+L + L + SG I G+ DL + E
Sbjct: 24 LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPRE 83
Query: 252 IFYVPQRPYTAVGTLRDQLIYPLTSDQEV--EPLTHGGMVELLKNVDLEYLLDRYP-PEK 308
+ V ++ V + P S EV EPL G+ LL R PE+
Sbjct: 84 VLEVRRKTIGYVSQFLRVI--PRVSALEVVAEPLLERGVPREAARARARELLARLNIPER 141
Query: 309 EINWG---DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER---FCAKVRAMG 362
W S GEQQR+ +AR F +LDE T+++ + A+ +A G
Sbjct: 142 L--WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARG 199
Query: 363 TSCITISHRPALVA 376
+ I I H +
Sbjct: 200 AALIGIFHDEEVRE 213
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 52/172 (30%), Positives = 74/172 (43%), Gaps = 31/172 (18%)
Query: 193 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GS 246
G L++ ++L + PG L I GPNG+GKS+L + L G SG + GV
Sbjct: 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPE 71
Query: 247 DLNKEIFYVPQR-----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE-LLKNVDLEYL 300
+L + +PQ P+T ++ I P S + EP + L DL L
Sbjct: 72 ELARHRAVLPQNSSLAFPFTVQEVVQMGRI-PHRSGR--EPEEDERIAAQALAATDLSGL 128
Query: 301 LDR-YPPEKEINWGDELSLGEQQRLGMARLFYH------KPKFAILDECTSA 345
R Y LS GEQQR+ +AR+ ++ LDE TSA
Sbjct: 129 AGRDYR---------TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171
|
Length = 259 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-07
Identities = 54/176 (30%), Positives = 77/176 (43%), Gaps = 38/176 (21%)
Query: 193 TGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-AKPGVGS-DL- 248
TG VL V N +L +E G ++ G +GSGKS+L R + GL P+ G + K G GS D+
Sbjct: 34 TGLVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVA 93
Query: 249 -----------NKEIFYVPQR----PYTAVGTLRDQLIYPL----TSDQEVEPLTHGGMV 289
+ V Q+ P+ T+ + + + L E
Sbjct: 94 NCDAATLRRLRTHRVSMVFQQFALLPWR---TVEENVAFGLEMQGMPKAERRKRVD---- 146
Query: 290 ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
E L+ V L DR P ELS G QQR+G+AR F + ++DE SA
Sbjct: 147 EQLELVGLAQWADRKP--------GELSGGMQQRVGLARAFATEAPILLMDEPFSA 194
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-07
Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 44/210 (20%)
Query: 183 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI--- 239
F GVK + +N+ LKV P S + G NG+GKS+L + L G++ SG I
Sbjct: 7 SFPGVKAL--------DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQ 58
Query: 240 AKP------------GVGSDLNKEIFYVPQRPYTAVGTLRDQLI---YPLTSDQEVEPLT 284
K G+ S +++E+ V QR ++ D + YP +
Sbjct: 59 GKEIDFKSSKEALENGI-SMVHQELNLVLQR------SVMDNMWLGRYPTKG----MFVD 107
Query: 285 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 344
M K + E +D P K LS+ + Q + +A+ F + K I+DE TS
Sbjct: 108 QDKMYRDTKAIFDELDIDIDPRAKVAT----LSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163
Query: 345 AVT-TDMEERF--CAKVRAMGTSCITISHR 371
++T ++ F K++ G + ISH+
Sbjct: 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHK 193
|
Length = 491 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 5e-07
Identities = 44/213 (20%), Positives = 87/213 (40%), Gaps = 34/213 (15%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 253
N ++++L+L++E G L + G +G GK++L R + G +G + + ++++
Sbjct: 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK-AAGLTGRIAIA---DRDLT 72
Query: 254 YVPQRPYT-AVG------------TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL 300
+ P P+ + + D + + L + + + + + LK V L
Sbjct: 73 HAP--PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDA 130
Query: 301 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 360
P + LS G QQR+ +AR +P +LDE SA+ ++ ++ A
Sbjct: 131 AAHLPAQ--------LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAA 182
Query: 361 MGTS-------CITISHRPALVAFHDVVLSLDG 386
+ C+T AL + DG
Sbjct: 183 LHEELPELTILCVTHDQDDALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 5e-07
Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 38/193 (19%)
Query: 213 ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-VGSDLNKEIFYVPQRPYTAVG------- 264
I G +GSGK++L R++ GL G I G D K IF P++ +G
Sbjct: 28 IFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK--RRIGYVFQEAR 85
Query: 265 -----TLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSL 318
++R L Y + + ++ ++ELL + +LL R P LS
Sbjct: 86 LFPHLSVRGNLRYGMKRARPSERRISFERVIELL---GIGHLLGRLP--------GRLSG 134
Query: 319 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER-----FCAKVRA-MGTSCITISHRP 372
GE+QR+ + R P+ ++DE +A+ D + + ++ A G + +SH
Sbjct: 135 GEKQRVAIGRALLSSPRLLLMDEPLAAL--DDPRKYEILPYLERLHAEFGIPILYVSHSL 192
Query: 373 ---ALVAFHDVVL 382
+A VVL
Sbjct: 193 QEVLRLADRVVVL 205
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 28/178 (15%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
+E +K P G ++ + K E G + + GPNG+GKS+LF G+ SG +
Sbjct: 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLI 61
Query: 242 PGVGSDL-NKEIFYVPQRPYTAVGTL----RDQLIYPLTSDQEVE--PLTHG-------- 286
G K + V + VG + DQL P T +++V PL G
Sbjct: 62 KGEPIKYDKKSLLEVRKT----VGIVFQNPDDQLFAP-TVEEDVAFGPLNLGLSKEEVEK 116
Query: 287 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 344
+ E LK V +E + PP LS G+++R+ +A + KP+ +LDE TS
Sbjct: 117 RVKEALKAVGMEG-FENKPPH-------HLSGGQKKRVAIAGILAMKPEIIVLDEPTS 166
|
Length = 275 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 6e-07
Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 50/208 (24%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913
+ + EI G+ + + GP+GSGKS++ +L G L KP+ G
Sbjct: 22 KDVNLEIEAGEFVAIVGPSGSGKSTLLNLL--------GGLDKPTS----------GEVL 63
Query: 914 VPQRPYTCLGTLRDQIIYPLSREEAELRALKL------HGKGEKLVDTTNILDS-YLKTI 966
+ + T L +E A+LR K+ L+ +L++ L +
Sbjct: 64 INGKDLTKLS----------EKELAKLRRKKIGFVFQNFN----LLPDLTVLENVELPLL 109
Query: 967 LEGV-------RLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDEC 1019
+ G LLE + LS G+QQR+ +AR + PK + DE
Sbjct: 110 IAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEP 169
Query: 1020 TNA----TSVDVEEQLYRLAKDMGITFV 1043
T T+ +V E L L K+ G T +
Sbjct: 170 TGNLDSKTAKEVLELLRELNKERGKTII 197
|
Length = 226 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 6e-07
Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 48/203 (23%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT--------KPSQHIDEEA 905
R ++ E+ G+ + + G NG+GK+++ + + GL SG + P
Sbjct: 20 RGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER---- 75
Query: 906 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREE-AELRALKLHGKGEKLVDTTNILD--SY 962
+ GI YVP+ +I L+ EE L A K + D + +
Sbjct: 76 -ARLGIAYVPE---------GRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPR 125
Query: 963 LKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN- 1021
LK + + LS GEQQ L +AR +PK +LDE +
Sbjct: 126 LKERRN--QRAGT-----------------LSGGEQQMLAIARALMSRPKLLLLDEPSEG 166
Query: 1022 -ATSV--DVEEQLYRLAKDMGIT 1041
A + ++ E + L K+ G+T
Sbjct: 167 LAPKIVEEIFEAIKELRKEGGMT 189
|
Length = 237 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 6e-07
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 29/160 (18%)
Query: 195 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV----GSDLNK 250
N +++NL L ++ G+ + + GP+G GK+++ R++ GL G I G S +
Sbjct: 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR 78
Query: 251 EIFYVPQR----PYTAVGT-----LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 301
+I V Q P+ ++G L+ + Q V+ E L+ VDL
Sbjct: 79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVK--------EALELVDLAGFE 130
Query: 302 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
DRY D++S G+QQR+ +AR KPK + DE
Sbjct: 131 DRYV--------DQISGGQQQRVALARALILKPKVLLFDE 162
|
Length = 351 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 7e-07
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 989 WEDILSLGEQQRLGMARLFFHKPKFGILDECT----NATSVDVEEQLYRLAKDMGITFVT 1044
E+ILS G++QR+ +AR P ILDE T T + E L LAK + +
Sbjct: 93 RENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIA 152
Query: 1045 SSQRPALI 1052
R + I
Sbjct: 153 --HRLSTI 158
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 7e-07
Identities = 60/222 (27%), Positives = 91/222 (40%), Gaps = 37/222 (16%)
Query: 805 ELEELLDA--AQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVP 862
L L+ A P E +S +I L+I++P K LA L F +
Sbjct: 323 SLVTFLETPLAHPQQGEKELASNDPV-------TIEAEDLEILSPDGKTLAGPLNFTLPA 375
Query: 863 GKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIFYVPQRPY 919
G+ + + GP+G+GK+S+ L G P GSL + +D E+ + +V Q P
Sbjct: 376 GQRIALVGPSGAGKTSLLNALLGFLP-YQGSLKINGIELRELDPESWRKH-LSWVGQNPQ 433
Query: 920 TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLERE 979
GTLRD ++ L +A D L+ LE +S L
Sbjct: 434 LPHGTLRDNVL--LGNPDAS--------------------DEQLQQALENAWVSEFLPLL 471
Query: 980 EVGWDANLNWEDI-LSLGEQQRLGMARLFFHKPKFGILDECT 1020
G D + + LS+G+ QRL +AR + +LDE T
Sbjct: 472 PQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPT 513
|
Length = 588 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 7e-07
Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 28/187 (14%)
Query: 197 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA--KPGVGSDL---NKE 251
L++ ++ + G L + G NG+GK++L +++ GL G I + + DL K+
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75
Query: 252 IFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 307
+ +V R PY TLR+ +Y + G+ EL + LE+L+D YP
Sbjct: 76 LCFVGHRSGINPYL---TLRENCLYDIHFSP-----GAVGITELCRLFSLEHLID-YP-- 124
Query: 308 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV---RAMGTS 364
LS G+++++ + RL+ K K +LDE A+ K+ RA G +
Sbjct: 125 -----CGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 365 CITISHR 371
+ SH+
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 8e-07
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 33/180 (18%)
Query: 182 IEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
I+ V + N ++N++ ++ G + I G NGSGKS++ ++L GL SG I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 241 KPGVGSDLNKE-----------IFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGM 288
G+ ++KE IF P + +G T+ D + + L E + + M
Sbjct: 68 IDGI--TISKENLKEIRKKIGIIFQNPDNQF--IGATVEDDIAFGL----ENKKVPPKKM 119
Query: 289 ----VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 344
+L K V +E LD+ P LS G++QR+ +A + P+ I DE TS
Sbjct: 120 KDIIDDLAKKVGMEDYLDKEP--------QNLSGGQKQRVAIASVLALNPEIIIFDESTS 171
|
Length = 271 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 8e-07
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 23/166 (13%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP------LVSGHIAKPGVGSDLNKE 251
V+ ++ + G L I G NGSGKS+L ++L G+ L++ H G S +K
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 252 IFYVPQRPYTA------VGTLRDQLIYPLTSDQEVEPLTHGGMV-ELLKNVDLEYLLDRY 304
I + Q P T+ +G + D +PL + ++EP + E L+ V L
Sbjct: 89 IRMIFQDPNTSLNPRLRIGQILD---FPLRLNTDLEPEQRRKQIFETLRMVGL------L 139
Query: 305 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 350
P L+ G++QR+ +AR +PK I DE +++ M
Sbjct: 140 PDHANYY-PHMLAPGQKQRVALARALILRPKIIIADEALASLDMSM 184
|
Length = 267 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 9e-07
Identities = 58/211 (27%), Positives = 88/211 (41%), Gaps = 36/211 (17%)
Query: 847 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG 906
P +L + L+ I PGK++ + G +G GKS+V +L + SG + I +
Sbjct: 14 PDVPIL-KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNL 72
Query: 907 SGC--GIFYVPQRPYTCLGTLRDQIIY---PLSREEAELRALKLHGKGEKLVDTTNILDS 961
I V Q P GT+ + I Y + EE E A K NI
Sbjct: 73 RWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVE-EAAKK----------ANI-HD 120
Query: 962 YLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1021
++ ++ +G Y VG + LS G++QR+ +AR PK +LDE T+
Sbjct: 121 FIMSLPDG----Y---DTLVGERGSQ-----LSGGQKQRIAIARALLRNPKILLLDEATS 168
Query: 1022 ATSVDVE----EQLYRLAKDMGITFVTSSQR 1048
A + E E L R K G T + + R
Sbjct: 169 ALDAESEKLVQEALDRAMK--GRTTIVIAHR 197
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 990 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDM---GITFVTSS 1046
E+ILS G++QRLG+AR + P+ +LDE + V+ E L + + G T + +
Sbjct: 94 ENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIA 153
Query: 1047 QRPALI 1052
RP +
Sbjct: 154 HRPETL 159
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 51/188 (27%), Positives = 77/188 (40%), Gaps = 38/188 (20%)
Query: 835 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS- 893
++ISFS + L+ ++ G+ + +TG NG+GK+++ ++L GL SGS
Sbjct: 3 ENISFS-----YKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI 57
Query: 894 -LTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKL 952
L E S I YV Q L T D + REE L +L E+
Sbjct: 58 LLNGKPIKAKERRKS---IGYVMQDVDYQLFT--DSV-----REELLLGLKELDAGNEQA 107
Query: 953 VDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPK 1012
+T+L+ + L L ER + LS G++QRL +A
Sbjct: 108 -----------ETVLKDLDLYALKERHPL----------SLSGGQKQRLAIAAALLSGKD 146
Query: 1013 FGILDECT 1020
I DE T
Sbjct: 147 LLIFDEPT 154
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-06
Identities = 46/195 (23%), Positives = 77/195 (39%), Gaps = 38/195 (19%)
Query: 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 896
+ F + +LL + L+F I G + + GPNG+GKS++ ++L G +SG++
Sbjct: 322 LEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV 381
Query: 897 PSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTT 956
G I Y Q RD++ P EL
Sbjct: 382 ---------GETVKIGYFDQH--------RDELD-PDKTVLEELSEGF-----------P 412
Query: 957 NILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGIL 1016
+ + ++ L + + + VG +LS GE+ RL +A+L P +L
Sbjct: 413 DGDEQEVRAYLGRFGFTGEDQEKPVG---------VLSGGEKARLLLAKLLLQPPNLLLL 463
Query: 1017 DECTNATSVDVEEQL 1031
DE TN ++ E L
Sbjct: 464 DEPTNHLDIESLEAL 478
|
Length = 530 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 1e-06
Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 43/240 (17%)
Query: 116 LRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISREL---SIEDKSPQRNGS 172
LR+ +++ + S+ S+S +RL + + EL SIE + + G
Sbjct: 586 LRFPLNILPMVISSIVQASVSLKRL-----------RIFLSHEELEPDSIERR-TIKPGE 633
Query: 173 RNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW 232
N + N F+ + + PT N +T + G+ + + G G GKSSL L
Sbjct: 634 GNSITVHN-ATFTWARDLPPTLN----GITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 688
Query: 233 PLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE-- 290
V GH+ G + YVPQ+ + +LR+ +++ + + + ++E
Sbjct: 689 DKVEGHVHMKG-------SVAYVPQQAWIQNDSLRENILF----GKALNEKYYQQVLEAC 737
Query: 291 -LLKNVDLEYLL--DRYP-PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 346
LL DLE L DR EK +N LS G++QR+ +AR Y + D+ SAV
Sbjct: 738 ALLP--DLEILPSGDRTEIGEKGVN----LSGGQKQRVSLARAVYSNADIYLFDDPLSAV 791
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 50/203 (24%), Positives = 80/203 (39%), Gaps = 34/203 (16%)
Query: 862 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTC 921
PG + GPNGSGKS++ R+L G +G++ +G + + +R
Sbjct: 26 PGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL----------AGVDLHGLSRRARAR 75
Query: 922 LGTLRDQII---YPLSREEAEL--RALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLL 976
L +Q PL+ + R ++D L LS+L
Sbjct: 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALAR----TELSHLA 131
Query: 977 EREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK 1036
+R+ LS GE+QR+ +AR +PK +LDE TN V + + L +
Sbjct: 132 DRDM----------STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVR 181
Query: 1037 DMGITFVTSSQRPALIPFHSLEL 1059
++ T VT + H L L
Sbjct: 182 ELAATGVTV-----VAALHDLNL 199
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-06
Identities = 47/155 (30%), Positives = 68/155 (43%), Gaps = 26/155 (16%)
Query: 200 NLTLKVEPGSNLLITGPNGSGKSSLFR-VLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 258
N+ L V GS + I G G GK+SL +LG L P + G + YVPQ
Sbjct: 635 NINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG-------TVAYVPQV 687
Query: 259 PYTAVGTLRDQLIYPLTSDQE-------VEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 311
+ T+RD +++ D E V L H ++LL DL + +R
Sbjct: 688 SWIFNATVRDNILFGSPFDPERYERAIDVTALQHD--LDLLPGGDLTEIGER-------- 737
Query: 312 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 346
G +S G++QR+ MAR Y I D+ SA+
Sbjct: 738 -GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL 771
|
Length = 1622 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 30/161 (18%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-----DLNKEI 252
++ ++ + + G + GPNG+GKS+ +++ G P SG + G ++ + I
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNI 77
Query: 253 FYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPL----THGGMVELLKNVDLEYLLDR--YP 305
Y+P+ PL D V E L GM L +E +++
Sbjct: 78 GYLPEHN-------------PLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR 124
Query: 306 PE--KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 344
PE K+I +LS G +QR+G+A+ H PK ILDE T+
Sbjct: 125 PEQHKKIG---QLSKGYRQRVGLAQALIHDPKVLILDEPTT 162
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 42/170 (24%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HIAKPGVGSDLNKE 251
V ++ +V G + GPNG+GK++ ++L L SG +A G D+ +E
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA----GHDVVRE 67
Query: 252 -------IFYVPQRPYTAVGTLRDQL-----------IYPLTSDQEVEPLTHGGMVELLK 293
I V Q ++ D+L +Y + + E + ELL
Sbjct: 68 PREVRRRIGIVFQDL-----SVDDELTGWENLYIHARLYGVPGAERRERID-----ELLD 117
Query: 294 NVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 343
V L DR S G ++RL +AR H+P+ LDE T
Sbjct: 118 FVGLLEAADRLV--------KTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-06
Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 23/166 (13%)
Query: 191 TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS--GHIAKPGVGSD- 247
T G ++++L+ VE G + + G GSGKS+L L L L+S G I GV +
Sbjct: 1228 TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTL---LSALLRLLSTEGEIQIDGVSWNS 1284
Query: 248 -----LNKEIFYVPQRPYTAVGTLRDQL-IYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 301
K +PQ+ + GT R L Y SD+E+ + + V L+ ++
Sbjct: 1285 VTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVA--------EEVGLKSVI 1336
Query: 302 DRYPPEKE---INWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 344
+++P + + ++ G LS G +Q + +AR K K +LDE ++
Sbjct: 1337 EQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSA 1382
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-06
Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 20/197 (10%)
Query: 201 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-------AKPGVGSDLNKEIF 253
L+ ++ P + I G G+GKSS+ L + L G I +K G+ DL K +
Sbjct: 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGL-MDLRKVLG 1316
Query: 254 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPP--EKEIN 311
+PQ P GT+R L P + + + E L+ L+ ++ R + E++
Sbjct: 1317 IIPQAPVLFSGTVRFNL-DPFNEHNDAD------LWESLERAHLKDVIRRNSLGLDAEVS 1369
Query: 312 WGDE-LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSC--ITI 368
E S+G++Q L +AR + K +LDE T+AV + +R SC + I
Sbjct: 1370 EAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 1429
Query: 369 SHRPALVAFHDVVLSLD 385
+HR + D +L LD
Sbjct: 1430 AHRLNTIIDCDRILVLD 1446
|
Length = 1622 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 19/161 (11%)
Query: 191 TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD--- 247
T GN ++EN++ + PG + + G GSGKS+L L G I GV +
Sbjct: 13 TEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVP 71
Query: 248 ---LNKEIFYVPQRPYTAVGTLRDQL-IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 303
K +PQ+ + GT R L Y SD+E+ + + V L+ ++++
Sbjct: 72 LQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVA--------EEVGLKSVIEQ 123
Query: 304 YPPEKE---INWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
+P + + ++ G LS G +Q + +AR K K +LDE
Sbjct: 124 FPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDE 164
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 28/186 (15%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---------AKP-- 242
G ++ + L+V+PG + I GP+GSGK++L R + L +G I A+
Sbjct: 15 GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLS 74
Query: 243 ---GVGSDLNKEIFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 295
G+ L + + +V Q P+ V L + + P+ E + ELL V
Sbjct: 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTV--LENIIEGPVIVKGEPKEEATARARELLAKV 132
Query: 296 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFC 355
L YP LS G+QQR+ +AR +P+ + DE TSA+ ++
Sbjct: 133 GLAGKETSYP--------RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 356 AKVRAM 361
+R +
Sbjct: 185 NTIRQL 190
|
Length = 250 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-06
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 47/211 (22%)
Query: 184 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG 243
F GVK + L V PG + + G NG+GKS++ +VL G++ +G I
Sbjct: 14 FPGVKAL--------SGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILY-- 63
Query: 244 VGSDLNKEI-FYVPQRPYTA-VGTLRDQL--IYPLTSDQEV----EPLTHGGMVE----- 290
L KE+ F P+ A +G + +L I LT + + E + G ++
Sbjct: 64 ----LGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMY 119
Query: 291 -----LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
LL ++L R+ +K + ELS+GEQQ + +A++ + K I+DE T A
Sbjct: 120 AEADKLLARLNL-----RFSSDKLVG---ELSIGEQQMVEIAKVLSFESKVIIMDEPTDA 171
Query: 346 VT-TDMEERFCAKV----RAMGTSCITISHR 371
+T T+ E F +V ++ G + ISHR
Sbjct: 172 LTDTETESLF--RVIRELKSQGRGIVYISHR 200
|
Length = 501 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 38/206 (18%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN-KEIFYVP 256
V+ ++ +E G L + G +GSGKS + GL P S A P + +++
Sbjct: 26 VKGISFDIEAGETLALVGESGSGKSVTALSILGLLP--SPAAAHPSGSILFDGEDLLAAS 83
Query: 257 QRPYTAVGTLRDQLIY--PLTS--------DQEVEPLT-HGGM---------VELLKNVD 296
+R V + +I+ P+TS Q E L H G+ +ELL+ V
Sbjct: 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVG 143
Query: 297 L---EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--VTTDME 351
+ E LD YP ELS G++QR+ +A ++P I DE T+A VT +
Sbjct: 144 IPEPEKRLDAYP--------HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQ 195
Query: 352 --ERFCAKVRAMGTSCITISHRPALV 375
+ +G + + I+H +V
Sbjct: 196 ILDLLKELQAELGMAILFITHDLGIV 221
|
Length = 534 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 36/167 (21%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH-------IAKPGVGSDLNK 250
+ N+ S + + GPNG+GKS+LFR G+ SG I K + ++ K
Sbjct: 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENI-REVRK 78
Query: 251 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-----------EPLTHGGMVELLKNVDLEY 299
+ V Q P D I+ T +Q++ E + H + L + LE
Sbjct: 79 FVGLVFQNP--------DDQIFSPTVEQDIAFGPINLGLDEETVAH-RVSSALHMLGLEE 129
Query: 300 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 346
L DR P LS GE++R+ +A + +P+ +LDE T+ +
Sbjct: 130 LRDRVP--------HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGL 168
|
Length = 277 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 54/205 (26%), Positives = 82/205 (40%), Gaps = 41/205 (20%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913
++F + PG+ + GPNG+GK++ R+L G L +P G F
Sbjct: 22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAG--------LLEPDAGFATVDG-----FD 68
Query: 914 VPQRPYTC---LGTLRDQI-IYP-LS-REEAELRALKLHG-KGEKLVDTTNILDSYLKTI 966
V + P LG + D +Y L+ RE E A L+G KG++L L L
Sbjct: 69 VVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFA-GLYGLKGDELTARLEELADRL--- 124
Query: 967 LEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVD 1026
+ LL+R G S G +Q++ +AR H P +LDE T V
Sbjct: 125 ----GMEELLDRRVGG----------FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVM 170
Query: 1027 VEEQLY---RLAKDMGITFVTSSQR 1048
L R + +G + S+
Sbjct: 171 ATRALREFIRQLRALGKCILFSTHI 195
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 47/209 (22%), Positives = 79/209 (37%), Gaps = 28/209 (13%)
Query: 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 895
I L ++LL ++ ++ PG+ L + GPNG+GKS++ + L G SG +T
Sbjct: 1 MIRAENLSYSLAGRRLLD-GVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVT 59
Query: 896 KPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDT 955
++ + L +P + +E H G + +
Sbjct: 60 LNGVPLNSWPPEELARHRAVLPQNSSLA-------FPFTVQEVVQMGRIPHRSGREPEED 112
Query: 956 TNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFH------ 1009
I L LS L R+ LS GEQQR+ +AR+
Sbjct: 113 ERIAAQA----LAATDLSGLAGRD----------YRTLSGGEQQRVQLARVLAQLWPPVP 158
Query: 1010 KPKFGILDECTNATSVDVEEQLYRLAKDM 1038
++ LDE T+A + + RLA+ +
Sbjct: 159 SGRWLFLDEPTSALDIAHQHHTLRLARQL 187
|
Length = 259 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-06
Identities = 56/213 (26%), Positives = 88/213 (41%), Gaps = 47/213 (22%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE----EAGSGCGI 911
++F I GK++ + G +G+GKS++ R+L + V SGS+T Q I + GI
Sbjct: 282 ISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGI 341
Query: 912 FYVPQRPYTCLGTLRDQIIYP---LSREE--AELRALKLHGKGEKLVD--TTNILDSYLK 964
VPQ T+ I Y + EE A A ++H + L + T + + LK
Sbjct: 342 --VPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLK 399
Query: 965 TILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATS 1024
LS GE+QR+ +AR P ILDE T+A
Sbjct: 400 ----------------------------LSGGEKQRVAIARTILKNPPILILDEATSALD 431
Query: 1025 VDVEEQLYRLAKDMGITFVTSSQRPALIPFHSL 1057
E+ + +++ S+ R L+ H L
Sbjct: 432 THTEQAIQAALREV------SAGRTTLVIAHRL 458
|
Length = 497 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 54/206 (26%), Positives = 80/206 (38%), Gaps = 46/206 (22%)
Query: 199 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG--LWPLVSGHIAKPGVGSDLN------- 249
+ + L V+ G I GPNGSGKS+L + + G + + SG I G DL
Sbjct: 17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFK--GQDLLELEPDER 74
Query: 250 --KEIFYVPQRP------------YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 295
+F Q P +A+ R + L + L +
Sbjct: 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKL----LKAKLALL 130
Query: 296 DL-EYLLDRYPPEKEINWGDELSLGEQQR---LGMARLFYHKPKFAILDECTSAVTTDME 351
+ E L+R +N G S GE++R L MA L +PK AILDE S + D
Sbjct: 131 GMDEEFLNRS-----VNEG--FSGGEKKRNEILQMALL---EPKLAILDEIDSGLDIDAL 180
Query: 352 ERFCA---KVRAMGTSCITISHRPAL 374
+ ++R S + I+H L
Sbjct: 181 KIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 40/173 (23%)
Query: 194 GNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNK 250
G+V + N++ + G + I G +GSGKS+L +LGGL SG + G ++K
Sbjct: 18 GSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFN--GQPMSK 75
Query: 251 EIFYVPQRPYTAVGTLRDQ---LIYP-------LTSDQEVE-PLTHGGM---------VE 290
A LR+Q IY T+ + V PL G +E
Sbjct: 76 -------LSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALE 128
Query: 291 LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 343
+L V LE+ + P ELS GE+QR+ +AR + P+ + DE T
Sbjct: 129 MLAAVGLEHRANHRP--------SELSGGERQRVAIARALVNNPRLVLADEPT 173
|
Length = 233 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 42/202 (20%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
I + V V G+ + + + V GS + G NGSGKS+LF+ L G L SG I+
Sbjct: 7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISI 66
Query: 242 PG--VGSDLNKE-IFYVPQRP------------------YTAVGTLRDQLIYPLTSDQEV 280
G L K + YVPQ Y +G LR D+++
Sbjct: 67 LGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLR----RAKKRDRQI 122
Query: 281 EPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 339
+ L VD +E+ R+ ++I ELS G+++R+ +AR + + +L
Sbjct: 123 -------VTAALARVDMVEF---RH---RQIG---ELSGGQKKRVFLARAIAQQGQVILL 166
Query: 340 DECTSAVTTDMEERFCAKVRAM 361
DE + V E R + +R +
Sbjct: 167 DEPFTGVDVKTEARIISLLREL 188
|
Length = 272 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 4e-06
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 33/190 (17%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP- 256
+++++L V+ G + + GP+G GK++L R++ GL +G I + G ++I +P
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGG------RDITRLPP 73
Query: 257 -QRPYTAVGTLRDQLIYP-LTSDQEVE-PLTHGGM---------VELLKNVDLEYLLDRY 304
+R Y V + ++P LT + L + GM ELL V L +Y
Sbjct: 74 QKRDYGIV--FQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKY 131
Query: 305 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--- 361
P +LS G+QQR+ +AR P +LDE SA+ + E ++R +
Sbjct: 132 P--------GQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR 183
Query: 362 -GTSCITISH 370
G + I ++H
Sbjct: 184 LGVTTIMVTH 193
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 5e-06
Identities = 44/220 (20%), Positives = 90/220 (40%), Gaps = 43/220 (19%)
Query: 847 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL--------TKPS 898
P ++ ++ I PG+ + + G +GSGKS++ ++++ + +G +
Sbjct: 12 PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADP 71
Query: 899 QHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNI 958
+ + G V Q ++RD I L+ + E++++ +
Sbjct: 72 AWLRRQVG------VVLQENVLFNRSIRDNI--ALADPGMSM---------ERVIEAAKL 114
Query: 959 LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGMARLFFHKPKFGILD 1017
++ ++ E E G+D + + LS G++QR+ +AR H P+ I D
Sbjct: 115 AGAH----------DFISELPE-GYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFD 163
Query: 1018 ECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSL 1057
E T+A + E + R D+ + R +I H L
Sbjct: 164 EATSALDYESEHAIMRNMHDI------CAGRTVIIIAHRL 197
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 5e-06
Identities = 60/232 (25%), Positives = 101/232 (43%), Gaps = 39/232 (16%)
Query: 834 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLL-VTGPNGSGKSSVFRVLRGLWPVVSG 892
+D + S+L + + +L + +T +I P S+ + GP+GSGKS++ +VL L +
Sbjct: 8 EDVFNISRLYLYINDKAIL-KDITIKI-PNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDS 65
Query: 893 SLT---------KPSQHIDE-EAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRA 942
+ K ID + G+ + P+ L ++ D I YPL
Sbjct: 66 KIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHL-SIYDNIAYPL--------- 115
Query: 943 LKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLG 1002
K HG EK +K I+E L +E +D + LS G+QQRL
Sbjct: 116 -KSHGIKEK---------REIKKIVEECLRKVGLWKEV--YDRLNSPASQLSGGQQQRLT 163
Query: 1003 MARLFFHKPKFGILDECTN----ATSVDVEEQLYRLAKDMGITFVTSSQRPA 1050
+AR KPK ++DE T+ S +E+ + L ++ I V+ + +
Sbjct: 164 IARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQV 215
|
Length = 257 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 58/210 (27%), Positives = 87/210 (41%), Gaps = 51/210 (24%)
Query: 858 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGC--GIF 912
EI PG+ +++TGP+GSGK+++ ++ GL V GSL + E+ I
Sbjct: 26 LEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIG 85
Query: 913 YVPQRP--YTCLGTLRDQIIYPL------SREEAELRALKLHGKGEKLVDTTNILDSYLK 964
Y+ Q L T R + L S +EA RA + L+
Sbjct: 86 YIFQAHNLLGFL-TARQNVQMALELQPNLSYQEARERARAM-----------------LE 127
Query: 965 TILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA-- 1022
+ G L Y LS G++QR+ +AR H+PK + DE T A
Sbjct: 128 AVGLGDHLDYYPHN--------------LSGGQKQRVAIARALVHRPKLVLADEPTAALD 173
Query: 1023 --TSVDVEEQLYRLAKDMG--ITFVTSSQR 1048
+ DV E + +LA++ G I VT R
Sbjct: 174 SKSGRDVVELMQKLAREQGCTILIVTHDNR 203
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 6e-06
Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 38/183 (20%)
Query: 847 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG 906
P + R ++F I G+ + +TGP+G+GKS++ +++ G G + + G
Sbjct: 12 PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKG 71
Query: 907 SGCGIFYVPQRPYTCLGTLRDQI---------IYPLSREEAELRALKLHGKGEKLVDTTN 957
+ P+ LR QI + + E L++ GK
Sbjct: 72 R--------EIPF-----LRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPP------- 111
Query: 958 ILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILD 1017
+ + E + L L + LS GEQQR+ +AR ++P + D
Sbjct: 112 --REIRRRVSEVLDLVGLKHKARA-------LPSQLSGGEQQRVAIARAIVNQPAVLLAD 162
Query: 1018 ECT 1020
E T
Sbjct: 163 EPT 165
|
Length = 223 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 6e-06
Identities = 52/207 (25%), Positives = 93/207 (44%), Gaps = 41/207 (19%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIF 912
++ +I G+ + GP+G GK+++ R++ G SG + K ++
Sbjct: 19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP---------- 68
Query: 913 YVPQRPYTCLGTL-RDQIIYP-LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGV 970
+RP + T+ ++ ++P L+ E L+L + + + L+ V
Sbjct: 69 -PHKRP---VNTVFQNYALFPHLTVFENIAFGLRLKKLPK------AEIKERVAEALDLV 118
Query: 971 RLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSV----D 1026
+L R+ LS G+QQR+ +AR ++PK +LDE A + D
Sbjct: 119 QLEGYANRKP----------SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKD 168
Query: 1027 VEEQLYRLAKDMGITF--VTSSQRPAL 1051
++ +L RL K++GITF VT Q AL
Sbjct: 169 MQLELKRLQKELGITFVFVTHDQEEAL 195
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 6e-06
Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 37/197 (18%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG-LWP--LVSGHIAKPGVGSDLNK 250
G+ L+ N+ + G + + GP+G GKS+L + G L +G + +
Sbjct: 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNE------Q 67
Query: 251 EIFYVP--QRPYTAVGTL-RDQLIYPLTSDQE-----VEPLTHG-----GMVELLKNVDL 297
+ +P QR +G L +D L++P S + + G L+ L
Sbjct: 68 RLDMLPAAQR---QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGL 124
Query: 298 EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF--- 354
+ + P LS G++ R+ + R +PK +LDE S + + ++F
Sbjct: 125 DGAFHQDP--------ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQW 176
Query: 355 -CAKVRAMGTSCITISH 370
++VRA G + ++H
Sbjct: 177 VFSEVRAAGIPTVQVTH 193
|
Length = 213 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 7e-06
Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 48/191 (25%)
Query: 188 KVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH-IAKPGVGS 246
KVV P +L ++++L PG+ + + G NG+GKS+L R++ G+ +G PG+
Sbjct: 12 KVVPPKKEIL-KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGI-- 68
Query: 247 DLNKEIFYVPQRPY------------TAVGTLRDQL-----IYPLTS--DQEVEPL--TH 285
++ Y+PQ P V ++D L I + D +++ L
Sbjct: 69 ----KVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQ 124
Query: 286 GGMVELLKNVD-------LEYLLD--RYPPEKEINWGD----ELSLGEQQRLGMARLFYH 332
+ E++ D LE +D R PP D +LS GE++R+ + RL
Sbjct: 125 AELQEIIDAADAWDLDRKLEIAMDALRCPP------WDADVTKLSGGERRRVALCRLLLS 178
Query: 333 KPKFAILDECT 343
KP +LDE T
Sbjct: 179 KPDMLLLDEPT 189
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 7e-06
Identities = 55/194 (28%), Positives = 80/194 (41%), Gaps = 44/194 (22%)
Query: 182 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 238
IE + V P G + N++L + G + G +G+GKS+L R + L SG
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 239 IAKPGV------GSDLNKE------IF----YVPQRPYTAVGTLRDQLIYPL----TSDQ 278
+ G +L K IF + R T+ D + PL T
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR------TVFDNVALPLELAGTPKA 115
Query: 279 EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 338
E++ ELL+ V L DRYP + LS G++QR+ +AR PK +
Sbjct: 116 EIKARVT----ELLELVGLSDKADRYPAQ--------LSGGQKQRVAIARALASNPKVLL 163
Query: 339 LDECTSAV---TTD 349
DE TSA+ TT
Sbjct: 164 CDEATSALDPATTR 177
|
Length = 343 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 8e-06
Identities = 48/202 (23%), Positives = 78/202 (38%), Gaps = 23/202 (11%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913
+ L F G+ L + G NG+GKS++ L GL SG++ + +D S G+
Sbjct: 9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY---SRKGLLE 65
Query: 914 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 973
QR DQ+ ++ L L + ++ ++ L V S
Sbjct: 66 RRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAE-------VERRVREALTAVGAS 118
Query: 974 YLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR 1033
L ER LS GE++R+ +A +P +LDE T EQ+
Sbjct: 119 GLRERP----------THCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA 168
Query: 1034 LA---KDMGITFVTSSQRPALI 1052
+ + G+T V S+ L
Sbjct: 169 ILRRLRAEGMTVVISTHDVDLA 190
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 8e-06
Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 52/204 (25%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT--------KPSQHIDEEA 905
++ + G+ + + G NG+GK+++ + + GL P SGS+ P
Sbjct: 17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARA- 75
Query: 906 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKT 965
GI YVP+ +I L+ EE L + ++ K
Sbjct: 76 ----GIGYVPE---------GRRIFPELTVEENLLLGAYARRRAKR------------KA 110
Query: 966 ILEGV-----RLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1020
LE V RL ++ A LS GEQQ L +AR +PK +LDE +
Sbjct: 111 RLERVYELFPRLKERRKQL-----AGT-----LSGGEQQMLAIARALMSRPKLLLLDEPS 160
Query: 1021 NATSVDVEEQLYRLAKDM---GIT 1041
+ + E+++ +++ G+T
Sbjct: 161 EGLAPKIVEEIFEAIRELRDEGVT 184
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 65/192 (33%)
Query: 857 TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 916
+F I G++L + G +G GKS++ R++ GL SG +
Sbjct: 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL--------------------- 71
Query: 917 RPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLL 976
+ I LS+EE R L+L LE V L
Sbjct: 72 --------FEGKDITKLSKEERRERVLEL---------------------LEKVGLP--- 99
Query: 977 EREEVGWDANLNWEDI-LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ----L 1031
+ L LS G++QR+G+AR PK + DE +A V V+ Q L
Sbjct: 100 -------EEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLL 152
Query: 1032 YRLAKDMGITFV 1043
L +++G+T++
Sbjct: 153 KDLQEELGLTYL 164
|
Length = 268 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 46/222 (20%)
Query: 195 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD------- 247
V+ ++L + G L + G +GSGKS+L L L P G I G D
Sbjct: 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEM 358
Query: 248 --LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV--EPL-THGG----------MVELL 292
L + + V Q PY G+L P + ++ E L H ++E L
Sbjct: 359 RPLRRRMQVVFQDPY---GSLS-----PRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410
Query: 293 KNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 351
+ V L +RYP E S G++QR+ +AR KP+ +LDE TSA+ ++
Sbjct: 411 EEVGLDPATRNRYP--------HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQ 462
Query: 352 ERFCAKVRAM----GTSCITISHRPALV-AF-HDVVLSLDGE 387
+ +R + G S + ISH A+V A H V++ DG+
Sbjct: 463 AQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504
|
Length = 534 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 21/199 (10%)
Query: 200 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG------VGSDLNKEIF 253
++ + G + I G +G+GKS++ R+L + + SG I G L + I
Sbjct: 281 GISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG 340
Query: 254 YVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 311
VPQ T+ + Y P + +EV + + + P +
Sbjct: 341 IVPQDTVLFNDTIAYNIKYGRPDATAEEVG--------AAAEAAQIHDFIQSLPEGYDTG 392
Query: 312 WGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR--AMGTSCI 366
G+ +LS GE+QR+ +AR P ILDE TSA+ T E+ A +R + G + +
Sbjct: 393 VGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTL 452
Query: 367 TISHRPALVAFHDVVLSLD 385
I+HR + + D ++ LD
Sbjct: 453 VIAHRLSTIIDADEIIVLD 471
|
Length = 497 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 188 KVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HIAKPGVG 245
K V++L+L V G + G NG+GK++ ++L G SG +I +
Sbjct: 8 KTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIR 67
Query: 246 SDLNK---EIFYVPQ 257
+D + Y PQ
Sbjct: 68 TDRKAARQSLGYCPQ 82
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 25/190 (13%)
Query: 196 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 255
++ NL L+++PG + + G +G+GK++L R++ G +P G +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS 456
Query: 256 PQRPYTAVGTLRDQLI----YPLTSDQEVEPLTHGGMVELLKNVDL--EYLLDRYPPEKE 309
P + I T D VE+L L L R
Sbjct: 457 ALIPGEYEPEFGEVTILEHLRSKTGDLNAA-------VEILNRAGLSDAVLYRRKF---- 505
Query: 310 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV----RAMGTSC 365
ELS G+++R +A+L +P ++DE + + R K+ R G +
Sbjct: 506 ----SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITL 561
Query: 366 ITISHRPALV 375
I ++HRP +
Sbjct: 562 IVVTHRPEVG 571
|
Length = 593 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 59/198 (29%), Positives = 91/198 (45%), Gaps = 42/198 (21%)
Query: 870 GPNGSGKSSVFRVLR---GLWPVVS--GSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGT 924
GP+GSGKS++ R + L P V+ GS+ +I Y P+ T
Sbjct: 38 GPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI-----------YSPR---TDTVD 83
Query: 925 LRDQI--------IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLL 976
LR +I +P+S E + L+L G +K +LD ++ L+G S
Sbjct: 84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDK-----QVLDEAVEKSLKGA--SIWD 136
Query: 977 EREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA----TSVDVEEQLY 1032
E ++ D+ L LS G+QQR+ +AR+ PK +LDE T+A ++ +EE L
Sbjct: 137 EVKDRLHDSALG----LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLL 192
Query: 1033 RLAKDMGITFVTSSQRPA 1050
L D + VT S + A
Sbjct: 193 GLKDDYTMLLVTRSMQQA 210
|
Length = 252 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 36/163 (22%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---------------AKP 242
V +++L+V G + + GPNG+GK++ F ++ GL SG I A+
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79
Query: 243 GVGSDLNKEIFYVPQRPYTAVG-TLRDQLIYPL---TSDQEVEPLTHGGMVELLKNVDLE 298
G+G Y+PQ T+ D ++ L D + + LL+ +
Sbjct: 80 GIG--------YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEE-LDALLEEFHIT 130
Query: 299 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
+L D LS GE++R+ +AR PKF +LDE
Sbjct: 131 HLRDSK--------AYSLSGGERRRVEIARALAANPKFILLDE 165
|
Length = 243 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 43/205 (20%)
Query: 197 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL---VSGHIAKPGVGSDLNKEIF 253
++++ + V+PG +L+ G GSG S+L + L V G I G+ E +
Sbjct: 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81
Query: 254 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWG 313
++IY D LT V L++ L G
Sbjct: 82 -------------PGEIIYVSEEDVHFPTLT----VRET----LDFALRCK--------G 112
Query: 314 DE----LSLGEQQRLGMARLFYHKPKFAILDECT----SAVTTDMEERFCAKVRAMGTSC 365
+E +S GE++R+ +A + D T S+ ++ + + T+
Sbjct: 113 NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTT 172
Query: 366 ITISHRPALVAFH---DVVLSLDGE 387
++ + + V++ +G
Sbjct: 173 FVSLYQASDEIYDLFDKVLVLYEGR 197
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 40/180 (22%), Positives = 74/180 (41%), Gaps = 26/180 (14%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCGIF 912
++ I + G +GSGKS++ ++L G + SG + + ID I
Sbjct: 493 ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQF-IN 551
Query: 913 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 972
Y+PQ PY G++ + ++ ++E + + I D
Sbjct: 552 YLPQEPYIFSGSILENLLLG-AKENVSQDEIW------AACEIAEIKDD----------- 593
Query: 973 SYLLEREEVGWDANLNWEDI-LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQL 1031
+E +G+ L+ E +S G++QR+ +AR K ILDE T+ E+++
Sbjct: 594 ---IENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKI 650
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 55/202 (27%), Positives = 89/202 (44%), Gaps = 35/202 (17%)
Query: 858 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQR 917
E+ G + + GP+GSGKS++ R++ GL SG + Q I +V Q
Sbjct: 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80
Query: 918 PYTCLG--TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL 975
Y T+RD I + L E + K+ + E+L LE V+L L
Sbjct: 81 -YALFKHLTVRDNIAFGL--EIRKHPKAKIKARVEEL--------------LELVQLEGL 123
Query: 976 LEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ----L 1031
+R + + LS G++QR+ +AR +P+ +LDE A V ++ L
Sbjct: 124 GDR----------YPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWL 173
Query: 1032 YRLAKDMGIT--FVTSSQRPAL 1051
+L ++ +T FVT Q A+
Sbjct: 174 RKLHDEVHVTTVFVTHDQEEAM 195
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 24/196 (12%)
Query: 857 TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG---SGCGIFY 913
+ E+ PG+ + + GPNG+GK+++F ++ G + SG++ + I + GI
Sbjct: 24 SLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIAR 83
Query: 914 VPQ--RPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR 971
Q R + L T+ + + L ++ + + +LE V
Sbjct: 84 TFQITRLFPGL-TVLENVAVGAHARLGLSGLLGRPRARKEERE----ARERARELLEFVG 138
Query: 972 LSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT---NAT-SVDV 1027
L L +R LS G+Q+RL +AR +PK +LDE N + ++
Sbjct: 139 LGELADRPAGN----------LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEEL 188
Query: 1028 EEQLYRLAKDMGITFV 1043
E + L G+T +
Sbjct: 189 AELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 45/214 (21%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHID-EEAGSGCG-I 911
+ ++F + G++L + G NGSGKS++ ++L G+ SG + + + I
Sbjct: 30 KPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRI 89
Query: 912 FYVPQRPYTCL------GTLRDQIIYPLSRE---EAELRALKLHGKGEKLVDTTNILDSY 962
+ Q P T L G + D +PL E E R
Sbjct: 90 RMIFQDPNTSLNPRLRIGQILD---FPLRLNTDLEPEQR--------------------- 125
Query: 963 LKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA 1022
K I E +R+ LL AN +L+ G++QR+ +AR +PK I DE +
Sbjct: 126 RKQIFETLRMVGLLPDH-----ANYY-PHMLAPGQKQRVALARALILRPKIIIADEALAS 179
Query: 1023 TSVDVEEQLYRLAKD----MGITFVTSSQRPALI 1052
+ + QL L + GI+++ +Q +I
Sbjct: 180 LDMSMRSQLINLMLELQEKQGISYIYVTQHIGMI 213
|
Length = 267 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 42/173 (24%)
Query: 200 NLTLKVEPGSNLLITGPNGSGKSSLFRVL---GGLWPLVS--------GH-IAKPGVGS- 246
+++L P + GP+GSGKS+L R + L P V+ GH I P +
Sbjct: 23 SVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82
Query: 247 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPP 306
DL KEI V Q+P ++ + ++Y L LK + + +LD
Sbjct: 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLR----------------LKGIKDKQVLDEAVE 126
Query: 307 E--KEINWGDE-----------LSLGEQQRLGMARLFYHKPKFAILDECTSAV 346
+ K + DE LS G+QQR+ +AR+ PK +LDE TSA+
Sbjct: 127 KSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSAL 179
|
Length = 252 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 54/199 (27%), Positives = 82/199 (41%), Gaps = 24/199 (12%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913
+ EI + GP+GSGKS++ RV L + + ++D G IF
Sbjct: 20 DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLD-----GQDIFK 74
Query: 914 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 973
+ R Q+++ + L + G KL N L K + E VR
Sbjct: 75 MD----VIELRRRVQMVFQIPNPIPNLSIFENVALGLKL----NRLVKSKKELQERVR-- 124
Query: 974 YLLEREEVGWDANLNWEDI----LSLGEQQRLGMARLFFHKPKFGILDECTN----ATSV 1025
+ LE+ ++ WD + D LS G+QQRL +AR +P+ + DE T +
Sbjct: 125 WALEKAQL-WDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTA 183
Query: 1026 DVEEQLYRLAKDMGITFVT 1044
+E L KDM I VT
Sbjct: 184 KIESLFLELKKDMTIVLVT 202
|
Length = 250 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 56/182 (30%), Positives = 80/182 (43%), Gaps = 33/182 (18%)
Query: 190 VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG--LWPLVSGHIAKPGVGSD 247
+ N +++ L L + G I GPNGSGKS+L +V+ G + ++ G I G S
Sbjct: 15 ASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGE-SI 73
Query: 248 LNKE--------IFYVPQRPYTAVG-TLRDQLIYPLTSDQ------EVEPLTHGGMV-EL 291
L+ E IF Q P G + D L S + E++PL ++ E
Sbjct: 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEK 133
Query: 292 LKNVDL-EYLLDRYPPEKEINWGDELSLGEQQR---LGMARLFYHKPKFAILDECTSAVT 347
LK V + L R +N G S GE++R L MA L + AILDE S +
Sbjct: 134 LKLVGMDPSFLSRN-----VNEG--FSGGEKKRNEILQMALL---DSELAILDETDSGLD 183
Query: 348 TD 349
D
Sbjct: 184 ID 185
|
Length = 252 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 57/232 (24%), Positives = 101/232 (43%), Gaps = 27/232 (11%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
I F V G ++ +T + PG +TG +G+GKS+L +++ G+ +G I
Sbjct: 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61
Query: 242 PG--VGSDLNKEIFYVPQRP---YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE------ 290
G + N+E+ ++ ++ + L D+ +Y D PL G
Sbjct: 62 SGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVY----DNVAIPLIIAGASGDDIRRR 117
Query: 291 LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 350
+ +D LLD K N+ +LS GEQQR+G+AR +KP + DE T + +
Sbjct: 118 VSAALDKVGLLD-----KAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172
Query: 351 EE---RFCAKVRAMGTSCITISHRPALVAFHDV-VLSLDGEGEWRVHDKRDG 398
E R + +G + + +H L++ +L+L + +H G
Sbjct: 173 SEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTL---SDGHLHGGVGG 221
|
Length = 222 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 239
+++++ +V G + + G NG+GKS+L R+L G++P SG +
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV 79
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 37/211 (17%)
Query: 183 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG----- 237
E GVKV G + + ++ LK+ + GP+G GKS+L R + L+ G
Sbjct: 22 EVEGVKVFY-GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEG 80
Query: 238 -------HIAKPGVGS-DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 289
+I + S L +++ V QRP ++ + + + P +G
Sbjct: 81 RLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAF--------APRANG--- 129
Query: 290 ELLKNVD--LEYLLDRYPPEKEIN-----WGDELSLGEQQRLGMARLFYHKPKFAILDEC 342
N+D +E L R +E+ G LS G+QQRL +AR KP ++DE
Sbjct: 130 -YKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEP 188
Query: 343 TSA---VTTDMEERFCAKVRAMGTSCITISH 370
SA ++T E C +++ T I ++H
Sbjct: 189 CSALDPISTRQVEELCLELKEQYT-IIMVTH 218
|
Length = 274 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 25/184 (13%)
Query: 203 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTA 262
L V G + I GP+G+GKS+L ++ G SG I +D + QRP +
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV----NDQSHTGLAPYQRPVSM 74
Query: 263 VG---------TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWG 313
+ T+R + L ++ +V+ + V + LDR P
Sbjct: 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-------- 126
Query: 314 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT----SCITIS 369
++LS G++QR+ +AR +LDE SA+ + E A V+ + + + + ++
Sbjct: 127 EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVT 186
Query: 370 HRPA 373
H +
Sbjct: 187 HHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 30/210 (14%)
Query: 181 YIE--FSGVKVVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 237
YIE S +++ TG L V++ +L +E G +I G +GSGKS++ R+L L G
Sbjct: 24 YIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83
Query: 238 HIAKPGVGSDLNK----EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM----- 288
+ GV D+ K E+ V ++ V + + D + G+
Sbjct: 84 QVLIDGV--DIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEER 141
Query: 289 ----VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 344
++ L+ V LE YP DELS G +QR+G+AR P ++DE S
Sbjct: 142 REKALDALRQVGLENYAHSYP--------DELSGGMRQRVGLARALAINPDILLMDEAFS 193
Query: 345 A----VTTDMEERFCAKVRAMGTSCITISH 370
A + T+M++ + + ISH
Sbjct: 194 ALDPLIRTEMQDELVKLQAKHQRTIVFISH 223
|
Length = 400 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 25/169 (14%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP------LVSGHIAKPGVGSDLNKE 251
V+ L+ + G L I G NGSGKS+L ++L G+ L+ H G S ++
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQR 88
Query: 252 IFYVPQRPYTA------VGTLRDQLIYPLTSDQEVEPLT-HGGMVELLKNVDLEYLLDRY 304
I + Q P T+ + + D +PL + ++EP ++E L+ V L
Sbjct: 89 IRMIFQDPSTSLNPRQRISQILD---FPLRLNTDLEPEQREKQIIETLRQVGLL------ 139
Query: 305 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 353
P+ + L+ G++QRLG+AR +PK I DE +++ DM R
Sbjct: 140 -PDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASL--DMSMR 185
|
Length = 267 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 19/147 (12%)
Query: 201 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKPGVGSDLNKEIFYVPQ 257
L V+ G LL+ G NG+GK++L RVL GL + SG I K D ++ + Y+
Sbjct: 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGH 89
Query: 258 RP--YTAVGTLRDQLIYPLTSDQEVEP-LTHGGMVELLKNVDLEYLLDRYPPEKEINWGD 314
P + TL + ++ L G + ++ E L R
Sbjct: 90 LPGLKADLSTLEN--LHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVR----------- 136
Query: 315 ELSLGEQQRLGMARLFYHKPKFAILDE 341
+LS G+++RL +ARL+ +LDE
Sbjct: 137 QLSAGQKKRLALARLWLSPAPLWLLDE 163
|
Length = 214 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 53/206 (25%), Positives = 87/206 (42%), Gaps = 49/206 (23%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSG------- 908
+T + G++L++ GP+G+GKSS+ RVL L SG+L H D
Sbjct: 21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80
Query: 909 ---CGIFYVPQRPYTCLGTLRDQIIYP-----LSREEAELRALKLHGKGEKLVDTTNILD 960
G+ + + L ++ I P LS+++A RA KL
Sbjct: 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKL--------------- 125
Query: 961 SYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1020
LE +RL +R + LS G+QQR+ +AR +P+ + DE T
Sbjct: 126 ------LERLRLKPYADR----------FPLHLSGGQQQRVAIARALMMEPQVLLFDEPT 169
Query: 1021 NATSVDVEEQLYRLAKDM---GITFV 1043
A ++ Q+ + +++ GIT V
Sbjct: 170 AALDPEITAQIVSIIRELAETGITQV 195
|
Length = 242 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 36/202 (17%)
Query: 191 TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----- 245
TP ++N+ +++E G + + G GSGKS+L + L GL SG I GV
Sbjct: 16 TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKK 75
Query: 246 ---SDLNKEIFYVPQRP-YTAVGTLRDQLIY------PLT---SDQEVEPLTHGGMVELL 292
SD+ K++ V Q P Y L ++ I P+ S++E+E M ++
Sbjct: 76 VKLSDIRKKVGLVFQYPEY----QLFEETIEKDIAFGPINLGLSEEEIENRVKRAM-NIV 130
Query: 293 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 352
+D E D+ P ELS G+++R+ +A + +PK ILDE T+ + +
Sbjct: 131 G-LDYEDYKDKSP--------FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRD 181
Query: 353 RFCAKVRAM----GTSCITISH 370
K++ + + I +SH
Sbjct: 182 EILNKIKELHKEYNMTIILVSH 203
|
Length = 287 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 4e-05
Identities = 60/231 (25%), Positives = 97/231 (41%), Gaps = 57/231 (24%)
Query: 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL----- 234
N IE +KV VL + + L++ + + GP+GSGKS+L RV L L
Sbjct: 2 NKIEIRDLKVSFGQVEVL-DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 235 VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRD--QLIYPLTSDQEVEPLTHGGMVELL 292
VSG + G ++IF + V LR Q+++ Q P+ + + +
Sbjct: 61 VSGEVYLDG------QDIFKMD------VIELRRRVQMVF-----QIPNPIPN---LSIF 100
Query: 293 KNVDLEYLLDRYPPEKE-----INWGDE------------------LSLGEQQRLGMARL 329
+NV L L+R K+ + W E LS G+QQRL +AR
Sbjct: 101 ENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160
Query: 330 FYHKPKFAILDECTSAV----TTDMEERFCAKVRAMGTSCITISHRPALVA 376
+P+ + DE T+ + T +E F + M + + ++H P A
Sbjct: 161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKKDM--TIVLVTHFPQQAA 209
|
Length = 250 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 4e-05
Identities = 54/213 (25%), Positives = 90/213 (42%), Gaps = 42/213 (19%)
Query: 855 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGL----WPV-VSGSLTKPSQHIDEEAGSGC 909
++ +I K + GP+G GKS+ + L + PV V G + Q+I +
Sbjct: 25 GISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD------ 78
Query: 910 GIFYVPQRPYTCLGTLRDQI--------IYPLSREEAELRALKLHGKGEKLVDTTNILDS 961
P + LR QI +P+S E +++ K + D I++S
Sbjct: 79 --------PRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQA-DLDEIVES 129
Query: 962 YLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1021
LK + L + +G LS G+QQRL +AR KPK ++DE +
Sbjct: 130 ALKGAALWQEVKDKLNKSALG----------LSGGQQQRLCIARALAIKPKVLLMDEPCS 179
Query: 1022 A----TSVDVEEQLYRLAKDMGITFVTSSQRPA 1050
A ++ VEE ++ L ++ I VT + + A
Sbjct: 180 ALDPIATMKVEELIHSLRSELTIAIVTHNMQQA 212
|
Length = 259 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 4e-05
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 24/174 (13%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSS---LFRVLGGLWP--------LVSGH-IAKPGVG 245
++ +++++E S + GP+G GKS+ LF + L P + G I GV
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 246 SD-LNKEIFYVPQRPYTAVGTLRDQLIYPL-TSDQEVEPLTHGGMVELLKNVDL-EYLLD 302
D L K + V QRP ++ + + Y L + + + E LK L + + D
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD 138
Query: 303 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEE 352
+ KE + LS G+QQRL +AR P ++DE SA+ T +EE
Sbjct: 139 KL---KESAFA--LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEE 187
|
Length = 250 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 51/194 (26%), Positives = 78/194 (40%), Gaps = 31/194 (15%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN-------- 249
+ N++L V G +++ GP+GSGKS+L R L + G I G ++
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPRE 86
Query: 250 ------KEIFYVPQ--RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 301
I YV Q R V L D + PL + + +LL ++L L
Sbjct: 87 VLEVRRTTIGYVSQFLRVIPRVSAL-DVVAEPLLARGVPREVARAKAADLLTRLNLPERL 145
Query: 302 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER-----FCA 356
P S GEQQR+ +AR F +LDE T+++ D R
Sbjct: 146 WSLAPAT-------FSGGEQQRVNIARGFIVDYPILLLDEPTASL--DATNRAVVVELIR 196
Query: 357 KVRAMGTSCITISH 370
+ +A G + + I H
Sbjct: 197 EAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 40/180 (22%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
IE + +K VL +++L + G + + GP+GSGK++L R++ GL SGHI
Sbjct: 3 IEIANIKKSFGRTQVL-NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRF 61
Query: 242 PGVGSDL------NKEIFYVPQRPYTAVG--TLRDQLIYPLTS------------DQEVE 281
G +D+ ++++ +V Q Y T+ D + + LT +V
Sbjct: 62 HG--TDVSRLHARDRKVGFVFQH-YALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKV- 117
Query: 282 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
+LL+ V L +L DRYP + LS G++QR+ +AR +P+ +LDE
Sbjct: 118 -------TQLLEMVQLAHLADRYPAQ--------LSGGQKQRVALARALAVEPQILLLDE 162
|
Length = 353 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 4e-05
Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 54/214 (25%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL-----------TKPSQHIDEE 904
++ E+ G+ + G +G+GK+++ +++ G+ SG + TKP
Sbjct: 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGR 362
Query: 905 AGSGCGIFY-----VPQRPYTCLGTLRDQIIYPLSREEAELRA---LKLHGKGEKLVDTT 956
A GI + P R T L L + I L E A ++A LK+ G E+
Sbjct: 363 AKRYIGILHQEYDLYPHR--TVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE--KAE 418
Query: 957 NILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGIL 1016
ILD Y D LS GE+ R+ +A++ +P+ IL
Sbjct: 419 EILDKY---------------------------PDELSEGERHRVALAQVLIKEPRIVIL 451
Query: 1017 DECTNA----TSVDVEEQLYRLAKDMGITFVTSS 1046
DE T T VDV + + ++M TF+ S
Sbjct: 452 DEPTGTMDPITKVDVTHSILKAREEMEQTFIIVS 485
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 55/208 (26%)
Query: 855 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQH----------IDEE 904
+ I G+ +++ GP+GSGKS++ R + L + SG L I +E
Sbjct: 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78
Query: 905 AGSGCGIFYV-PQRPYTCLGTLRDQIIYPL-----SREEAELRALKLHGKGEKLVDTTNI 958
AG FY+ P L L + + PL S+EEAE +A +L K
Sbjct: 79 AGMVFQQFYLFPH-----LTALENVMFGPLRVRGASKEEAEKQARELLAK---------- 123
Query: 959 LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1018
V L+ ER A+ ++ LS G+QQR+ +AR KPK + DE
Sbjct: 124 -----------VGLA---ER------AH-HYPSELSGGQQQRVAIARALAVKPKLMLFDE 162
Query: 1019 CTNATSVDVEEQLYRLAKDM---GITFV 1043
T+A ++ ++ ++ +D+ G+T V
Sbjct: 163 PTSALDPELRHEVLKVMQDLAEEGMTMV 190
|
Length = 240 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 896
+SFS + ++ + + L+ E+ G+ + + G +GSGKS++ ++L G G +T
Sbjct: 6 VSFSYPE----QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITL 61
Query: 897 PSQHIDE-EAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRAL 943
+ + E I + QRPY TLR+ + S E + AL
Sbjct: 62 DGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLAL 109
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 5e-05
Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 24/200 (12%)
Query: 196 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 255
VL+ ++++ V G ++ G GSGKS+L + L + + G + + I YV
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWA-------ERSIAYV 726
Query: 256 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL---LDRYPPEKEINW 312
PQ+ + T+R +++ D+E + DL L L+ EK +N
Sbjct: 727 PQQAWIMNATVRGNILF---FDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVN- 782
Query: 313 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD-----MEERFCAKVRAMGTSCIT 367
LS G++ R+ +AR Y +LD+ SA+ +EE F + G + +
Sbjct: 783 ---LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALA--GKTRVL 837
Query: 368 ISHRPALVAFHDVVLSLDGE 387
+H+ +V D V++L
Sbjct: 838 ATHQVHVVPRADYVVALGDG 857
|
Length = 1560 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 31/177 (17%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA- 240
I+ +GV + +V L+ V G + GPNG+GKS++ R++ G+ +G I
Sbjct: 42 IDLAGVSK-SYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV 100
Query: 241 ----KPGVGSDLNKEIFYVPQ-----RPYTAVGTLRDQLI----YPLTSDQEVEPLTHGG 287
P I VPQ +T R+ L+ Y S +E+E +
Sbjct: 101 LGVPVPARARLARARIGVVPQFDNLDLEFTV----RENLLVFGRYFGMSTREIEAV---- 152
Query: 288 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 344
+ LL+ LE D +LS G ++RL +AR + P+ ILDE T+
Sbjct: 153 IPSLLEFARLESKADARVS--------DLSGGMKRRLTLARALINDPQLLILDEPTT 201
|
Length = 340 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 5e-05
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 197 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVGSDLN---KE 251
L++N++ K +PG I GP+G+GKS+L L G VSG + G D K
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKI 83
Query: 252 IFYVPQ 257
I YVPQ
Sbjct: 84 IGYVPQ 89
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-05
Identities = 48/201 (23%), Positives = 77/201 (38%), Gaps = 49/201 (24%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCG--- 910
R ++ +I G+++ + GP+GSGKS++ ++ + V SG + ID
Sbjct: 19 RDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL-----IDGHDVRDYTLAS 73
Query: 911 ----IFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTI 966
I V Q + T+ + I Y R A +
Sbjct: 74 LRRQIGLVSQDVFLFNDTVAENIAY--GRPGATREE-----------------------V 108
Query: 967 LEGVRLSYLLE---REEVGWDANLNWEDI-LSLGEQQRLGMARLFFHKPKFGILDECTNA 1022
E R + E G+D + + LS G++QR+ +AR P ILDE T+A
Sbjct: 109 EEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSA 168
Query: 1023 TSVDVE------EQLYRLAKD 1037
+D E L RL K+
Sbjct: 169 --LDTESERLVQAALERLMKN 187
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 39/192 (20%)
Query: 870 GPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQR----PYTCLGTL 925
GP+G GK+++ R+L G SGS+ + + I V Q P+ T+
Sbjct: 3 GPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM---TV 59
Query: 926 RDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 985
+ + + L K+ V I + L V+L +R+
Sbjct: 60 EENVAFGL----------KMRK-----VPRAEI-KPRVLEALRLVQLEEFADRKPHQ--- 100
Query: 986 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ----LYRLAKDMGIT 1041
LS G+QQR+ +AR KPK +LDE +A + +Q L + + +GIT
Sbjct: 101 -------LSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGIT 153
Query: 1042 --FVTSSQRPAL 1051
FVT Q A+
Sbjct: 154 FVFVTHDQEEAM 165
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 6e-05
Identities = 49/217 (22%), Positives = 89/217 (41%), Gaps = 36/217 (16%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913
++ I G+ ++V GP+G GK+++ ++ G GS+ + I E G+ G+ +
Sbjct: 22 EDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRI-EGPGAERGVVF 80
Query: 914 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 973
+ L + D + + L +LR + K ++ +L LEG
Sbjct: 81 QNEALLPWL-NVIDNVAFGL-----QLRGI---EKAQRREIAHQML---ALVGLEGAEHK 128
Query: 974 YLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR 1033
Y+ W+ LS G +QR+G+AR +P+ +LDE A EQ+
Sbjct: 129 YI-------------WQ--LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQE 173
Query: 1034 LAKDM------GITFVTSSQRPALIPFHSLELRLIDG 1064
L D+ + +T AL F + L ++
Sbjct: 174 LLLDLWQETGKQVLLITHDIEEAL--FLATRLVVLSP 208
|
Length = 259 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 44/168 (26%), Positives = 66/168 (39%), Gaps = 44/168 (26%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH--IAKPGVGSDLNKE---- 251
V+ + KV G GPNG+GK++ R+L L SG +A G D+ +E
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVA----GYDVVREPRKV 64
Query: 252 ---IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM------------VELLKNVD 296
I VPQ ++ + LT + +E G + ELL+ +
Sbjct: 65 RRSIGIVPQYA-----SVDED----LTGRENLE--MMGRLYGLPKDEAEERAEELLELFE 113
Query: 297 LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 344
L DR S G ++RL +A H+P LDE T+
Sbjct: 114 LGEAADRPV--------GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 28/224 (12%)
Query: 180 NYIEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 238
N +EF V P + + +++ + GS + G NGSGKS++ +++ GL L+
Sbjct: 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGL--LLPDD 61
Query: 239 IAKPGV---GSDLNKEIFY--------VPQRPYTA-VG-TLRDQLIYPLTSDQEVEPLTH 285
+ G L + + V Q P VG T+ D + + L + P
Sbjct: 62 NPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMI 121
Query: 286 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
+ ++L +V + +D P LS G++QR+ +A + +PK ILDE TS
Sbjct: 122 KIVRDVLADVGMLDYIDSEP--------ANLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 346 VTTDMEERFCAKVRAM----GTSCITISHRPALVAFHDVVLSLD 385
+ +E+ +R + + I+I+H D VL LD
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLD 217
|
Length = 282 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 29/163 (17%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSD 247
V++++++L + G I GPNG+GKS+L ++ L SG I G+ +
Sbjct: 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKE 72
Query: 248 LNKEIFYVPQR-PYTAVGTLRDQLI---YP-----LTSDQEVEPLTHGGMVELLKNVDLE 298
L K++ + Q + T+RD + +P LT + + E ++ + LE
Sbjct: 73 LAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI------INEAIEYLHLE 126
Query: 299 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
L DRY DELS G++QR +A + + +LDE
Sbjct: 127 DLSDRYL--------DELSGGQRQRAFIAMVLAQDTDYVLLDE 161
|
Length = 252 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 40/176 (22%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGS---GCG 910
R ++FE G+ + G NG+GK+++ R++ L SG +T + G
Sbjct: 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIG 78
Query: 911 IFYVPQRPYTCLGTLRDQI-----IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKT 965
+ + +R T R+ + + LSR+E + R +L K + L YL
Sbjct: 79 VLF-GERGLYARLTARENLKYFARLNGLSRKEIKARIAEL----SKRLQ----LLEYLDR 129
Query: 966 ILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1021
+ S G +Q++ +AR H P +LDE T+
Sbjct: 130 RVGE-----------------------FSTGMKQKVAIARALVHDPSILVLDEPTS 162
|
Length = 245 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 7e-05
Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 31/206 (15%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913
++ +I G+ + + GP+GSGK+++ R++ GL SG++ + + + +
Sbjct: 19 DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGF 78
Query: 914 VPQRPYTCLG--TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR 971
V Q Y T+ D + + L + R + + + + +L+ V+
Sbjct: 79 VFQH-YALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAK------------VHELLKLVQ 125
Query: 972 LSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQL 1031
L +L +R + LS G++QR+ +AR +PK +LDE A V ++L
Sbjct: 126 LDWLADR----------YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL 175
Query: 1032 Y----RLAKDMGIT--FVTSSQRPAL 1051
RL ++ +T FVT Q AL
Sbjct: 176 RRWLRRLHDELHVTTVFVTHDQEEAL 201
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 48/187 (25%), Positives = 72/187 (38%), Gaps = 42/187 (22%)
Query: 858 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQR 917
G+ L + GPNG+GK+++ R + GL P G++ I YVPQR
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGA---SPGKGWRHIGYVPQR 57
Query: 918 -------PYTCLGTL---RDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTIL 967
P + T+ R I L R + D + D+ L
Sbjct: 58 HEFAWDFPISVAHTVMSGRTGHIGWLRR--------------PCVADFAAVRDA-----L 98
Query: 968 EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDV 1027
V L+ L +R VG LS G++QR+ +AR +P +LDE +
Sbjct: 99 RRVGLTELADR-PVGE---------LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148
Query: 1028 EEQLYRL 1034
+E L L
Sbjct: 149 QELLTEL 155
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 7e-05
Identities = 39/197 (19%), Positives = 67/197 (34%), Gaps = 48/197 (24%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGS-GCGIF 912
R ++F + G+ + GPNG+GK++ ++L L SG T + E I
Sbjct: 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIG 76
Query: 913 YVPQRPYTCLGTLRDQI-----------IYPLSREEAELRALKLHGKGEKLVDTTNILDS 961
V Q ++ D++ +Y + E R +L V D
Sbjct: 77 IVFQDL-----SVDDELTGWENLYIHARLYGVPGAERRERIDELL----DFVGLLEAADR 127
Query: 962 YLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1021
+KT S G ++RL +AR H+P+ LDE T
Sbjct: 128 LVKT---------------------------YSGGMRRRLEIARSLVHRPEVLFLDEPTI 160
Query: 1022 ATSVDVEEQLYRLAKDM 1038
++ + +
Sbjct: 161 GLDPQTRAHVWEYIEKL 177
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 37/168 (22%)
Query: 197 LVENLTLKVEPGSNLLITGPNGSGKSSLF-----RVLGGLWPLVSGHIAKPGVGSD---L 248
++ +++L VE G + I G +GSGK++L RV GG SG I G
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGG--GTTSGQILFNGQPRKPDQF 79
Query: 249 NKEIFYVPQRPYTAVG-TLRDQLIYPLT-----------SDQEVEPLTHGGMVELLKNVD 296
K + YV Q G T+R+ L Y + VE LL+++
Sbjct: 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE-------DVLLRDLA 132
Query: 297 LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 344
L + +S GE++R+ +A PK ILDE TS
Sbjct: 133 LTRIGGNLVK--------GISGGERRRVSIAVQLLWDPKVLILDEPTS 172
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 7e-05
Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 35/186 (18%)
Query: 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSL-------------FR 226
N+ + G K V+N+T+K+ I GP+G GK++L FR
Sbjct: 8 NFSAYYGEKKA-------VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 227 VLGGLWPLVSGH-IAKPGVG-SDLNKEIFYVPQRPYTAVGTLRDQLIYPL----TSDQEV 280
V G + G I P + ++ K++ V Q+P ++ D + + +
Sbjct: 61 VEGKI--YFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHK 118
Query: 281 EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILD 340
+VE +++ L D E G LS G+QQRL +AR +P+ +LD
Sbjct: 119 ----LDRIVE--ESLKKAALWDEVKSELNKP-GTRLSGGQQQRLCIARALAVEPEVILLD 171
Query: 341 ECTSAV 346
E TSA+
Sbjct: 172 EPTSAL 177
|
Length = 250 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 7e-05
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 35/170 (20%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG------------HIAKPGVG 245
++++ L + + GP+G GKS+L R L + L+ G +I P V
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82
Query: 246 -SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS--------DQEVE-PLTHGGMVELLKNV 295
+L + + V Q+P ++ D + Y L D+ VE L + + +K+
Sbjct: 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD- 141
Query: 296 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
L + LS G+QQRL +AR KP+ ++DE TSA
Sbjct: 142 ----RLHKS--------ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179
|
Length = 253 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 8e-05
Identities = 60/223 (26%), Positives = 90/223 (40%), Gaps = 65/223 (29%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP-----VVSGSLT---KPSQHIDEEA 905
++FE+ G+ L + G +GSGKS + + + GL P +V G + K + E+
Sbjct: 22 DGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81
Query: 906 GS---GCGIFYVPQRPYTCLG---TLRDQIIYPL-------SREEAELRALKLHGKGEKL 952
G I + Q P T L T+ DQI L S++EA+ RA++L +L
Sbjct: 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELL----EL 137
Query: 953 V---DTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFH 1009
V D L SY E LS G +QR+ +A
Sbjct: 138 VGIPDPERRLKSY--------------PHE-------------LSGGMRQRVMIAMALAL 170
Query: 1010 KPKFGILDECTNATSVDVE------EQLYRLAKDMGIT--FVT 1044
PK I DE T T++DV + L L ++ G +T
Sbjct: 171 NPKLLIADEPT--TALDVTVQAQILDLLKELQREKGTALILIT 211
|
Length = 316 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 8e-05
Identities = 56/206 (27%), Positives = 92/206 (44%), Gaps = 53/206 (25%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSG-------SLTKPSQHIDEEAGSG 908
+ + G+ +++ GP+GSGKS++ R + L SG LT ++I+E
Sbjct: 19 IDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELR-QK 77
Query: 909 CGIFYVPQR----PY-TCLG--TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDS 961
G+ V Q+ P+ T L TL + +S+ EAE RAL+L
Sbjct: 78 VGM--VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALEL---------------- 119
Query: 962 YLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1021
LE V L+ ++ + + LS G+QQR+ +AR PK + DE T+
Sbjct: 120 -----LEKVGLA---DKADA-------YPAQLSGGQQQRVAIARALAMNPKVMLFDEPTS 164
Query: 1022 A----TSVDVEEQLYRLAKDMGITFV 1043
A +V + + LA++ G+T V
Sbjct: 165 ALDPELVGEVLDVMKDLAEE-GMTMV 189
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 8e-05
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 35/171 (20%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG------------HIAKPGVG 245
++N+++++ S + GP+G GKS+ R L + L+ I +P V
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 246 S-DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHG-------GMVEL-LKNVD 296
+L K + V Q+P ++ D + Y P HG G+VE L++
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAY--------GPRIHGANKKDLDGVVENALRSAA 139
Query: 297 L-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 346
L + DR LS G+QQRL +AR KPK + DE TSA+
Sbjct: 140 LWDETSDRLKSP-----ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSAL 185
|
Length = 258 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 9e-05
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 239
+L+++L+ K+ PG + + GPNG+GKS+LFR++ G SG I
Sbjct: 334 DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 9e-05
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 31/143 (21%)
Query: 213 ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-VGSDLNKEIFYVPQR------------- 258
+ GP+GSGK+SL ++ GL G I G V D K IF P++
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLF 88
Query: 259 PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSL 318
P+ V R L Y + +L+ + +E+LLDRYP LS
Sbjct: 89 PHYTV---RGNLRY------GMWKSMRAQFDQLVALLGIEHLLDRYP--------GTLSG 131
Query: 319 GEQQRLGMARLFYHKPKFAILDE 341
GE+QR+ + R P+ ++DE
Sbjct: 132 GEKQRVAIGRALLTAPELLLMDE 154
|
Length = 352 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 9e-05
Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 24/226 (10%)
Query: 178 EANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 237
E ++ + G ++ + + ++ G I G NG+GKS+LF+ L G+ SG
Sbjct: 2 EDYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSG 61
Query: 238 HIAKPGVGSD--------LNKEIFYVPQRPYTAV--GTLRDQLIYPLTSDQEVEPLTHGG 287
I G D L + + V Q P + ++ + + + + E
Sbjct: 62 RILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR 121
Query: 288 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV- 346
+ LK +E+L D K + LS G+++R+ +A + +PK +LDE T+ +
Sbjct: 122 VDNALKRTGIEHLKD-----KPTHC---LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLD 173
Query: 347 ---TTDMEERFCAKVRAMGTSCITISHRPALVAFH-DVVLSLDGEG 388
+++ + + +G + I +H +V + D V + EG
Sbjct: 174 PMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMK-EG 218
|
Length = 283 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 35/214 (16%)
Query: 862 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS---LTKPSQHIDEEAGSGC---GIFYVP 915
G+++ + G +GSGKS++ +L GL SG + +P +DEEA + + +V
Sbjct: 35 RGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVF 94
Query: 916 QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL 975
Q + + TL + E EL AL L G+ + + N + L+ + G RL +L
Sbjct: 95 QS-FMLIPTLN-------ALENVELPAL-LRGESSR--QSRNGAKALLEQLGLGKRLDHL 143
Query: 976 LEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN----ATSVDVEEQL 1031
+ LS GEQQR+ +AR F +P DE T T + + L
Sbjct: 144 PAQ--------------LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLL 189
Query: 1032 YRLAKDMGITFVTSSQRPALIPFHSLELRLIDGE 1065
+ L ++ G T + + L LRL++G+
Sbjct: 190 FSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQ 223
|
Length = 228 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 58/220 (26%), Positives = 86/220 (39%), Gaps = 60/220 (27%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--------- 904
+ ++F+I G++L + G +GSGKS + GL P + + S D E
Sbjct: 27 KGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQ 86
Query: 905 --AGSGCGIFYVPQRPYTCLG---TLRDQIIYPL------SREEAELRALKLHGKGEKLV 953
G I + Q P T L T+ Q+ L SR A RAL+L +LV
Sbjct: 87 LRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELL----ELV 142
Query: 954 ---DTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHK 1010
+ LD+Y LS G++QR+ +A ++
Sbjct: 143 GIPEPEKRLDAYPHE---------------------------LSGGQRQRVMIAMALANE 175
Query: 1011 PKFGILDECTNATSVDVEEQLYRLAKD------MGITFVT 1044
P I DE T A V V+ Q+ L K+ M I F+T
Sbjct: 176 PDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFIT 215
|
Length = 534 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 55/213 (25%), Positives = 90/213 (42%), Gaps = 42/213 (19%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRG--LWPVVSGSLTKPSQHI-----DEEAG 906
+ + + G+ + GPNGSGKS++ + + G + V SG++ Q + DE A
Sbjct: 17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERAR 76
Query: 907 SGCGIFYVPQRPYTCLGT-----LRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDS 961
+ G+F Q P G LR + A A +GE+ +D + L
Sbjct: 77 A--GLFLAFQYPEEIPGVSNLEFLRSAL-------NARRSA-----RGEEPLDLLDFLK- 121
Query: 962 YLKTILEGVRLSY-LLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1020
LK L + + L R ++N + S GE++R + ++ +PK ILDE
Sbjct: 122 LLKAKLALLGMDEEFLNR-------SVN--EGFSGGEKKRNEILQMALLEPKLAILDEID 172
Query: 1021 NATSVD----VEEQLYRLA-KDMGITFVTSSQR 1048
+ +D V E + RL D +T QR
Sbjct: 173 SGLDIDALKIVAEGINRLREPDRSFLIITHYQR 205
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 35/165 (21%)
Query: 859 EIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHI-----DEEAGSGCGIFY 913
EIV LL GPNG+GK++ F ++ GL SG + + I + A G G Y
Sbjct: 31 EIV---GLL--GPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG--Y 83
Query: 914 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 973
+PQ I L+ E+ + L++ K K + LD+ +LE ++
Sbjct: 84 LPQEA---------SIFRKLTVEDNIMAVLEIREKDLKKAERKEELDA----LLEEFHIT 130
Query: 974 YLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1018
+L + + LS GE++R+ +AR PKF +LDE
Sbjct: 131 HLRDSKAYS----------LSGGERRRVEIARALAANPKFILLDE 165
|
Length = 243 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 28/165 (16%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---DLNKEIFY 254
V+N++L+V+ G I G +G+GK++L +++ G+ SG + VG D+ K
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVR-VGDEWVDMTKPGPD 358
Query: 255 VPQRPYTAVGTLRDQL-IYP-------LTSDQEVE-PLTHGGM--VELLKNVDL-----E 298
R +G L + +YP LT +E P M V LK V E
Sbjct: 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAE 418
Query: 299 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 343
+LD+YP DELS GE+ R+ +A++ +P+ ILDE T
Sbjct: 419 EILDKYP--------DELSEGERHRVALAQVLIKEPRIVILDEPT 455
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 53/166 (31%), Positives = 78/166 (46%), Gaps = 36/166 (21%)
Query: 202 TLKVEPGS-----NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---SDLNKEIF 253
TL+VE GS + I GPNG GK++ ++L G+ KP G +L+ +
Sbjct: 14 TLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGV--------LKPDEGDIEIELDT-VS 64
Query: 254 YVPQR---PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI 310
Y PQ Y GT+RD L+ +T D P E+ K + +E +LDR P
Sbjct: 65 YKPQYIKADYE--GTVRD-LLSSITKDFYTHPYFK---TEIAKPLQIEQILDREVP---- 114
Query: 311 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA 356
ELS GE QR+ +A +LDE ++ + D+E+R A
Sbjct: 115 ----ELSGGELQRVAIAACLSKDADIYLLDEPSAYL--DVEQRLMA 154
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 52/195 (26%)
Query: 847 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG 906
++ L ++ + PG L+ GPNG+GK+++ R+L L P SG++ ID +
Sbjct: 11 GKKRAL-DGVSLTLGPGMYGLL-GPNGAGKTTLMRILATLTPPSSGTIR-----IDGQDV 63
Query: 907 SGCG------IFYVPQRPYTCLGTLRDQIIYPLSREEAELR---ALK-LHGKGEKLVDTT 956
I Y+PQ +YP L LK + K K
Sbjct: 64 LKQPQKLRRRIGYLPQEF----------GVYPNFTVREFLDYIAWLKGIPSKEVK----- 108
Query: 957 NILDSYLKTILEGVRLSYLLER--EEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFG 1014
+ E + L L +R +++G LS G ++R+G+A+ P
Sbjct: 109 -------ARVDEVLELVNLGDRAKKKIG---------SLSGGMRRRVGIAQALVGDPSIL 152
Query: 1015 ILDECTNATSVDVEE 1029
I+DE T +D EE
Sbjct: 153 IVDEPT--AGLDPEE 165
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 49/225 (21%)
Query: 835 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL 894
+++S + T + L ++ EI G+ + G +G+GKS++ R++ L SGS+
Sbjct: 5 ENVSKTFGQTGTGTVTAL-DDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63
Query: 895 TKPSQHIDEEAGSGC-----GIFYVPQRPYTCLG--TLRDQIIYPL-----SREEAELRA 942
Q + + + I + Q + L T+ + + +PL + E + R
Sbjct: 64 FVDGQDLTALSEAELRQLRQKIGMIFQH-FNLLSSRTVFENVAFPLELAGVPKAEIKQRV 122
Query: 943 LKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLG 1002
+L LE V LS +R LS G++QR+
Sbjct: 123 AEL---------------------LELVGLSDKADRYPAQ----------LSGGQKQRVA 151
Query: 1003 MARLFFHKPKFGILDECTNA----TSVDVEEQLYRLAKDMGITFV 1043
+AR + PK + DE T+A T+ + E L + +++G+T V
Sbjct: 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIV 196
|
Length = 339 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 43/202 (21%), Positives = 83/202 (41%), Gaps = 45/202 (22%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913
+ + +I G+ +++ GP+G GKS++ R++ GL SG + + + + GI
Sbjct: 20 KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79
Query: 914 VPQRPYTCL---GTLRDQIIYPL-----SREEAELRALKLHGKGEKLVDTTNILDSYLKT 965
V Q L T+ + I + L + E + R ++ KL+ ++L+
Sbjct: 80 VFQNY--ALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEV----AKLLGLEHLLNRKPLQ 133
Query: 966 ILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN---- 1021
LS G++QR+ +AR KPK +LDE +
Sbjct: 134 ---------------------------LSGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 1022 ATSVDVEEQLYRLAKDMGITFV 1043
V + ++ +L + +G T +
Sbjct: 167 KLRVLMRSEIKKLHERLGTTTI 188
|
Length = 338 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 896
I L + LL + ++ I PG + + G NG+GKS++ +++ G G +T
Sbjct: 1 IELENLSKTYGGKLLL-KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59
Query: 897 PSQHIDEEAGSGCGIFYVPQ 916
GS I Y Q
Sbjct: 60 ---------GSTVKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 34/206 (16%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGI 911
+ + +I + + GP+G GKS++ R L + +V G + D + +
Sbjct: 18 KNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDV 77
Query: 912 F-------YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLK 964
V Q+P ++ D I Y +LHG +K LD ++
Sbjct: 78 VELRRRVGMVFQKPNPFPMSIYDNIAY----------GPRLHGIKDK-----KELDEIVE 122
Query: 965 TILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA-- 1022
L+ L +EV + + LS G+QQRL +AR +P+ +LDE T+A
Sbjct: 123 ESLKKAALW-----DEVKDRLHDSALG-LSGGQQQRLCIARALAVEPEVLLLDEPTSALD 176
Query: 1023 --TSVDVEEQLYRLAKDMGITFVTSS 1046
+ +EE + L K I VT +
Sbjct: 177 PIATGKIEELIQELKKKYTIVIVTHN 202
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 41/167 (24%)
Query: 859 EIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS-------LTKPSQHIDEEAGSGCGI 911
EIV LL GPNG+GK++ F ++ GL SG +TK + + A G G
Sbjct: 27 EIV---GLL--GPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITK--LPMHKRARLGIG- 78
Query: 912 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR 971
Y+PQ I L+ EE L L++ G +K + L+ +LE
Sbjct: 79 -YLPQEA---------SIFRKLTVEENILAVLEIRGLSKK------EREEKLEELLEEFH 122
Query: 972 LSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1018
+++L R+ LS GE++R+ +AR PKF +LDE
Sbjct: 123 ITHL--RKSKA--------SSLSGGERRRVEIARALATNPKFLLLDE 159
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 30/174 (17%)
Query: 850 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAG 906
K++ L+F I G+ + GPNG+GKS++ R+L G+ G +T +P A
Sbjct: 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76
Query: 907 SGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTI 966
G+ VPQ L E L + G+ + +T +++ + ++
Sbjct: 77 VAIGV--VPQ-------------FDNLDPEFTVRENLLVFGRYFGM--STREIEAVIPSL 119
Query: 967 LEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1020
LE RL A++ LS G ++RL +AR + P+ ILDE T
Sbjct: 120 LEFARLES---------KADVRVAL-LSGGMKRRLTLARALINDPQLLILDEPT 163
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 2e-04
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 239
+L+++L+ + PG + I GPNG+GKS+LF+++ G SG I
Sbjct: 336 DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381
|
Length = 556 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-04
Identities = 62/222 (27%), Positives = 91/222 (40%), Gaps = 50/222 (22%)
Query: 182 IEFSGVKVVT--PTGNVLVE---------NLTLKVEPGS-----NLLITGPNGSGKSSLF 225
IEF + LVE + +L+VE G + I GPNG GK++
Sbjct: 324 IEFE-ERPPRDESERETLVEYPDLTKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFA 382
Query: 226 RVLGGLWPLVSGHIAKPGVGS-DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPL 283
++L G + KP G D +I Y PQ GT+ D L+ +T D
Sbjct: 383 KLLAG--------VLKPDEGEVDPELKISYKPQYIKPDYDGTVED-LLRSITDDLGSSYY 433
Query: 284 THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 343
E++K + LE LLD+ +LS GE QR+ +A +LDE +
Sbjct: 434 KS----EIIKPLQLERLLDKNV--------KDLSGGELQRVAIAACLSRDADLYLLDEPS 481
Query: 344 SAVTTDMEERF-CAKV--RAMGTSCITISHRPALVAFHDVVL 382
+ + D+E+R AK R T ALV HD+ +
Sbjct: 482 AHL--DVEQRLAVAKAIRRIAEEREAT-----ALVVDHDIYM 516
|
Length = 590 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 68/229 (29%), Positives = 95/229 (41%), Gaps = 61/229 (26%)
Query: 187 VKVVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV- 244
V TP G+V V +L + G L I G +GSGKS L GL +A G
Sbjct: 20 VTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL-------LAANGRI 72
Query: 245 -GSDL--NKEIFYVPQRPYTAVGTLRDQLIY-----PLTS--------DQEVEPLT-HGG 287
GS +EI +P++ + LR + I P+TS +Q +E L H G
Sbjct: 73 GGSATFNGREILNLPEK---ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKG 129
Query: 288 M---------VELLKNVDLEYLLDRYPPE--KEIN-WGDELSLGEQQRLGMARLFYHKPK 335
M V +L V + PE K + + E S G +QR+ +A +PK
Sbjct: 130 MSKAEAFEESVRMLDAVKM--------PEARKRMKMYPHEFSGGMRQRVMIAMALLCRPK 181
Query: 336 FAILDECTSA--VT------TDMEERFCAKVRAMGTSCITISHRPALVA 376
I DE T+A VT T + E R T+ I I+H +VA
Sbjct: 182 LLIADEPTTALDVTVQAQIMTLLNEL----KREFNTAIIMITHDLGVVA 226
|
Length = 330 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 38/164 (23%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 253
G +E++ L +E G L++ GP+G GK++L ++ G P G I G
Sbjct: 13 GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGK--------- 63
Query: 254 YVPQRPYTAVGTLR-----DQLIYPLTSDQE-VE-PLTHGGM---------VELLKNVDL 297
P G R ++ + P + Q+ V L G+ ++LK V L
Sbjct: 64 -----PVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGL 118
Query: 298 EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
E RY W +LS G++QR+G+AR P+ +LDE
Sbjct: 119 EGAEKRYI------W--QLSGGQRQRVGIARALAANPQLLLLDE 154
|
Length = 255 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 38/221 (17%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915
++ I G+ L +TGP+G+GK+++ ++L G+LT PS+ AG V
Sbjct: 21 VSLHIRKGEFLFLTGPSGAGKTTLLKLL-------YGALT-PSRGQVRIAG-----EDVN 67
Query: 916 QRPYTCLGTLRDQI--IYP-----LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 968
+ L LR +I ++ R E AL L +G+K + + L
Sbjct: 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKK----EREIQRRVGAALR 123
Query: 969 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVE 1028
V L + + LS GEQQR+ +AR + P + DE T D+
Sbjct: 124 QVGLE----------HKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS 173
Query: 1029 EQLYRLAK---DMGITFVTSSQRPALIP-FHSLELRLIDGE 1065
E++ L K G T + ++ +L+ + L DG
Sbjct: 174 ERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 52/210 (24%), Positives = 80/210 (38%), Gaps = 40/210 (19%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGL--WPVVSGSLTKPSQHI-----DEEAG 906
+ + + G+ + GPNGSGKS++ + G + V G + + I DE A
Sbjct: 21 KGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80
Query: 907 SGCGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKT 965
+ GIF Q P G T D + A+ ++ LK
Sbjct: 81 A--GIFLAFQYPVEIPGVTNSDFLRA----------AMNARRGARGILPEFIKE---LKE 125
Query: 966 ILEGVRLSY-LLERE-EVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNAT 1023
E + L LER G S GE++R + +L +PK ILDE +
Sbjct: 126 KAELLGLDEEFLERYVNEG----------FSGGEKKRNEILQLLLLEPKLAILDEPDSGL 175
Query: 1024 SVD----VEEQLYRLA-KDMGITFVTSSQR 1048
+D V E + L + G+ +T QR
Sbjct: 176 DIDALKIVAEGINALREEGRGVLIITHYQR 205
|
Length = 251 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 58/226 (25%), Positives = 89/226 (39%), Gaps = 63/226 (27%)
Query: 855 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGC-- 909
L F + G+ + + GP+GSGKS++ R+L L P+ G + + H+ G
Sbjct: 18 GLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77
Query: 910 ----------GIFYVPQR----PYTCLGTLRDQIIYP-----LSREEAELRALKLHGKGE 950
I V Q P+ + L + P ++R EAE RA++L
Sbjct: 78 DEKHLRQMRNKIGMVFQSFNLFPHKTV--LDNVTEAPVLVLGMARAEAEKRAMEL----- 130
Query: 951 KLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHK 1010
L+ V L+ D + LS G+QQR+ +AR +
Sbjct: 131 ----------------LDMVGLA----------DKADHMPAQLSGGQQQRVAIARALAMR 164
Query: 1011 PKFGILDECTNATSVD-VEEQL---YRLAK--DMGITFVTSSQRPA 1050
PK + DE T+A + V E L RLA D+ + VT A
Sbjct: 165 PKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFA 210
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 47/186 (25%), Positives = 71/186 (38%), Gaps = 27/186 (14%)
Query: 201 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 260
L V G + I GP+G+GKS+L ++ G SG I GV D +RP
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGV--DHTASPPA--ERPV 73
Query: 261 TAVGTLRDQLIYPLTSDQEVEPLTHGG----------MVELLKNVDLEYLLDRYPPEKEI 310
+ + + L LT Q + G + V L L R P
Sbjct: 74 SMLFQ-ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG---- 128
Query: 311 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV----RAMGTSCI 366
ELS G++QR+ +AR + +LDE SA+ + A V + +
Sbjct: 129 ----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLL 184
Query: 367 TISHRP 372
++H P
Sbjct: 185 MVTHHP 190
|
Length = 231 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 22/192 (11%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSDLNKE 251
+ N++L V G + G +G+GKS+L R + L SG + G S+L K
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 252 ---IFYVPQR-PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 307
I + Q + T+ + PL D + + ELL V L D YP
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-- 138
Query: 308 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEERFCAKVRAMGT 363
LS G++QR+ +AR PK + DE TSA+ T + E R +G
Sbjct: 139 ------SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL 192
Query: 364 SCITISHRPALV 375
+ + I+H +V
Sbjct: 193 TILLITHEMDVV 204
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 54/220 (24%), Positives = 85/220 (38%), Gaps = 35/220 (15%)
Query: 846 TPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS-------LTKPS 898
TP +K L+ EI G + V G NG+GKS++ + G SG +TK S
Sbjct: 15 TPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKS 74
Query: 899 QHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNI 958
+ A +F P T+ + + SR + R L E+
Sbjct: 75 VA--KRANLLARVFQDPLAGTAPELTIEENLALAESR--GKKRGL-SSALNERR------ 123
Query: 959 LDSYLKTILE-GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILD 1017
S+ + + G+ L L +LS G++Q L + H PK +LD
Sbjct: 124 RSSFRERLARLGLGLENRLSDR----------IGLLSGGQRQALSLLMATLHPPKILLLD 173
Query: 1018 ECTNA----TSVDVEEQLYRLAKDMGIT--FVTSSQRPAL 1051
E T A T+ V E ++ ++ +T VT + AL
Sbjct: 174 EHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDAL 213
|
Length = 263 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 40/242 (16%)
Query: 176 FSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV 235
F +YI G TP ++N++ ++E GS + + G GSGKS+L + L
Sbjct: 5 FENVDYIYSPG----TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS 60
Query: 236 SGHIA------KPGVGS----DLNKEIFYVPQRPYTAV---GTLRDQLIYPLT---SDQE 279
SG I P G+ L K++ V Q P + L+D P S+ E
Sbjct: 61 SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDE 120
Query: 280 VEPLTHGGMVELLKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 338
+ ++ LK V L E L+ + P ELS G+ +R+ +A + ++P+
Sbjct: 121 AKE----KALKWLKKVGLSEDLISKSP--------FELSGGQMRRVAIAGVMAYEPEILC 168
Query: 339 LDECTSAV----TTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEGEWRVH 393
LDE + + +M + F +A G + I ++H VA + D VL L+ G+ H
Sbjct: 169 LDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLE-HGKLIKH 226
Query: 394 DK 395
Sbjct: 227 AS 228
|
Length = 287 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 50/172 (29%), Positives = 73/172 (42%), Gaps = 35/172 (20%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG--VGSDLNK- 250
G L+ L+L G + G NGSGKS+L ++LG P G I + S +K
Sbjct: 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKA 82
Query: 251 ---EIFYVPQRPYTAVGTLRDQLI----YP---------LTSDQEVEPLTHGGMVELLKN 294
++ Y+PQ+ A G +L+ YP ++VE E +
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVE--------EAISL 134
Query: 295 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 346
V L+ L R D LS GE+QR +A L + +LDE TSA+
Sbjct: 135 VGLKPLAHRLV--------DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSAL 178
|
Length = 265 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 28/177 (15%)
Query: 179 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 238
N IE + G ++ L+L + GS + GPNG+GKS+L L G++ G
Sbjct: 2 DNIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGR 61
Query: 239 IAKPGVGSDLNKEIFY--------VPQRPYTAV--GTLRDQLIY-PLT---SDQEVEPLT 284
+ +G ++N E V Q P V T+ D + + P+ EVE
Sbjct: 62 VKV--MGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV 119
Query: 285 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
E LK V + D+ P LS G+++R+ +A + P +LDE
Sbjct: 120 E----EALKAVRMWDFRDKPP--------YHLSYGQKKRVAIAGVLAMDPDVIVLDE 164
|
Length = 274 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 27/225 (12%)
Query: 850 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC 909
K + L++++ PG+ + GPNG+GK+++ +L G P SG +T + G G
Sbjct: 44 KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTL----LGRRFGKGE 99
Query: 910 GIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEG 969
IF + +R L ++ R +R + L G + L L
Sbjct: 100 TIFELRKRIGLVSSELHERF-----RVRETVRDVVLSGFFASIGIYQEDLT---AEDLA- 150
Query: 970 VRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVE- 1028
+LLE A+ + LS GEQ+R+ +AR P+ ILDE +D+
Sbjct: 151 -AAQWLLELLGAKHLADRPFGS-LSQGEQRRVLIARALVKDPELLILDEPAQ--GLDLIA 206
Query: 1029 -EQLYR-----LAKDMGITFVTSSQRPALIP--FHSLELRLIDGE 1065
EQL A + + IP F L L +GE
Sbjct: 207 REQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHR-LLLKEGE 250
|
Length = 257 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 52/206 (25%), Positives = 83/206 (40%), Gaps = 31/206 (15%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913
+ ++ E+ G ++ GP GSGKS + + G SG + + I I Y
Sbjct: 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISY 75
Query: 914 VPQRPYTCLGTLRDQIIYP-LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 972
VPQ + ++P ++ + LK + VD I + + I E + +
Sbjct: 76 VPQ----------NYALFPHMTVYKNIAYGLKK-----RKVDKKEI-ERKVLEIAEMLGI 119
Query: 973 SYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLY 1032
+LL R+ + LS GEQQR+ +AR PK +LDE +A V +E+L
Sbjct: 120 DHLLNRKP----------ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLR 169
Query: 1033 RLAKDMGITFVTSSQRPALIPFHSLE 1058
K + F L H E
Sbjct: 170 EELKKIRKEFGV----TVLHVTHDFE 191
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL 894
L F + G++LLV G NG+GK+++ RVL GL V SG +
Sbjct: 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQI 68
|
Length = 214 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 48/216 (22%), Positives = 86/216 (39%), Gaps = 46/216 (21%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHID----------- 902
+ ++ EI + GP+G GKS+ R+ + ++ + + ID
Sbjct: 20 KGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79
Query: 903 EEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSY 962
+E G+ + QRP ++ + + Y L+++G V +
Sbjct: 80 DELRKNVGMVF--QRPNPFPKSIFENVAY----------GLRVNG-----VKDNAFIRQR 122
Query: 963 LKTILEGVRLSYLLEREEVGWDANLNWED----ILSLGEQQRLGMARLFFHKPKFGILDE 1018
++ L+G L WD + LS G+QQRL +AR P ++DE
Sbjct: 123 VEETLKGAAL----------WDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDE 172
Query: 1019 CTNA----TSVDVEEQLYRLAKDMGITFVTSSQRPA 1050
+A ++ VEE ++ L KD I VT + + A
Sbjct: 173 PASALDPISTAKVEELIHELKKDYTIVIVTHNMQQA 208
|
Length = 250 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 4e-04
Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 32/208 (15%)
Query: 849 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSG 908
+K + +T +I + + GP+G GK+++ R + + + G + + G
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFK-----G 69
Query: 909 CGIFYVPQRPYTCLGTLRDQI--------IYPLSREEAELRALKLHGKGEKLVDTTNILD 960
I+ P + R ++ +P+S + ++HG K + LD
Sbjct: 70 QDIY----DPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSK-----HKLD 120
Query: 961 SYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1020
++ L+ L +EV + N LS G+QQRL +AR +P+ +LDE T
Sbjct: 121 RIVEESLKKAAL-----WDEVKSELNKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPT 174
Query: 1021 NA----TSVDVEEQLYRLAKDMGITFVT 1044
+A + +E+ L L+++ I VT
Sbjct: 175 SALDPIATQRIEKLLEELSENYTIVIVT 202
|
Length = 250 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 42/165 (25%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---------------AKP 242
V ++L V+ G + + GPNG+GK++ F ++ GL SG I A+
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75
Query: 243 GVGSDLNKEIFYVPQRPYTAVG-TLRDQL-----IYPLTSDQEVEPLTHGGMVELLKNVD 296
G+G Y+PQ T+ + + I L+ + E L ELL+
Sbjct: 76 GIG--------YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKL-----EELLEEFH 122
Query: 297 LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
+ +L LS GE++R+ +AR PKF +LDE
Sbjct: 123 ITHLRKSK--------ASSLSGGERRRVEIARALATNPKFLLLDE 159
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 35/195 (17%)
Query: 870 GPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQI 929
GP+G GKS+V R L + V+ G+ + +D E G G+ V R + R
Sbjct: 37 GPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNP 96
Query: 930 IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 989
+S + + LKL+G K LD ++ L G ANL W
Sbjct: 97 FPTMSIRDNVVAGLKLNGVRNK-----KDLDELVEKSLRG---------------ANL-W 135
Query: 990 EDI----------LSLGEQQRLGMARLFFHKPKFGILDECTNA----TSVDVEEQLYRLA 1035
++ LS G+QQRL +AR +P ++DE +A +++ +E+ + L
Sbjct: 136 NEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK 195
Query: 1036 KDMGITFVTSSQRPA 1050
+D I VT + + A
Sbjct: 196 QDYTIVIVTHNMQQA 210
|
Length = 258 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-04
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ----LYRLAKDMGITF--VTSS 1046
LS G+QQR+ +AR +KPK +LDE +A + +Q L L + +GITF VT
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHD 204
Query: 1047 QRPAL 1051
Q AL
Sbjct: 205 QEEAL 209
|
Length = 375 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 53/226 (23%), Positives = 91/226 (40%), Gaps = 49/226 (21%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915
++ I G+ + + G +GSGKS++ +L G L P+ G
Sbjct: 24 VSLSIGKGEIVAIVGSSGSGKSTLLHLL--------GGLDNPTS----------GEVLFN 65
Query: 916 QRPYTCLGTLRDQIIYPLSREEAELRALKL------HGKGEKLVDTT---NILDSYL--- 963
+ + L S E A+LR KL H L D T N+ L
Sbjct: 66 GQSLSKLS----------SNERAKLRNKKLGFIYQFH---HLLPDFTALENVAMPLLIGK 112
Query: 964 KTILEGVRLSYLLEREEVGWDANLNWE-DILSLGEQQRLGMARLFFHKPKFGILDECT-- 1020
K++ E +Y + E+VG + +N LS GE+QR+ +AR ++P + DE T
Sbjct: 113 KSVKEAKERAYEM-LEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGN 171
Query: 1021 --NATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDG 1064
N + + + + L +++ +F+ + L L + DG
Sbjct: 172 LDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDG 217
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 26/172 (15%)
Query: 850 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSG- 908
K + L+F + G+ + GPNG+GKS++ R++ G+ +G +T + A
Sbjct: 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLAR 113
Query: 909 CGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 968
I VPQ L E L + G+ + +T +++ + ++LE
Sbjct: 114 ARIGVVPQ-------------FDNLDLEFTVRENLLVFGRYFGM--STREIEAVIPSLLE 158
Query: 969 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1020
R LE + A+ D LS G ++RL +AR + P+ ILDE T
Sbjct: 159 FAR----LESK-----ADARVSD-LSGGMKRRLTLARALINDPQLLILDEPT 200
|
Length = 340 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 64/220 (29%)
Query: 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVL--RGLWPVVSGSL 894
++ + + S K L + ++ + PG+ + GP+G+GKS++ L R VSG +
Sbjct: 9 LTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEV 68
Query: 895 TKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYP-LSREEAELRALKLHGKGEKLV 953
+ +D+ + I YVPQ D I++P L+ E + A KL G
Sbjct: 69 LINGRPLDKRSFRKI-IGYVPQ----------DDILHPTLTVRETLMFAAKLRG------ 111
Query: 954 DTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKF 1013
LS GE++R+ +A P
Sbjct: 112 ---------------------------------------LSGGERKRVSIALELVSNPSL 132
Query: 1014 GILDECTN----ATSVDVEEQLYRLAKDMGITFVTSSQRP 1049
LDE T+ ++++ V L RLA D G T + S +P
Sbjct: 133 LFLDEPTSGLDSSSALQVMSLLRRLA-DTGRTIICSIHQP 171
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 5e-04
Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 17/206 (8%)
Query: 849 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSG 908
+K + ++ +I + GP+G GKS+ R L + ++ + I+ E
Sbjct: 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83
Query: 909 CGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 968
+ V R + + +P+S + ++HG +K D ++++ L++
Sbjct: 84 PDVDVVELRKNVGM-VFQKPNPFPMSIYDNVAYGPRIHGANKK--DLDGVVENALRSAAL 140
Query: 969 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA----TS 1024
S L+ + LS G+QQRL +AR KPK + DE T+A ++
Sbjct: 141 WDETSDRLKSPALS----------LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPIST 190
Query: 1025 VDVEEQLYRLAKDMGITFVTSSQRPA 1050
+E+ + L KD I VT + + A
Sbjct: 191 ARIEDLIMNLKKDYTIVIVTHNMQQA 216
|
Length = 258 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 33/208 (15%)
Query: 851 LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCG 910
++++ + +I G+ ++ GP+G GKS++ R++ GL + SG L + +++ + G
Sbjct: 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERG 76
Query: 911 IFYVPQRPYTCLGTLRDQIIYP-LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEG 969
+ V Q Y +YP LS E LKL G I + + + E
Sbjct: 77 VGMVFQS-YA---------LYPHLSVAENMSFGLKLAG-----AKKEEI-NQRVNQVAEV 120
Query: 970 VRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE-CTN---ATSV 1025
++L++LL+R+ LS G++QR+ + R +P +LDE +N A V
Sbjct: 121 LQLAHLLDRK----------PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRV 170
Query: 1026 DVEEQLYRLAKDMGIT--FVTSSQRPAL 1051
+ ++ RL K +G T +VT Q A+
Sbjct: 171 QMRIEISRLHKRLGRTMIYVTHDQVEAM 198
|
Length = 369 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 57/248 (22%), Positives = 96/248 (38%), Gaps = 49/248 (19%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HI 239
I+ S + V +++ + L V GS + + GPNG+GK++L R + G +G +
Sbjct: 4 IDVSDL-SVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLV 62
Query: 240 AKPGVGS----DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 295
A V + ++ + VPQ T L+ + +V + G
Sbjct: 63 AGDDVEALSARAASRRVASVPQ------DT-------SLSFEFDVRQVVEMGRTPHRSRF 109
Query: 296 DLEYLLDRYPPEKEINWGD----------ELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
D DR E+ + LS GE+QR+ +AR +LDE T++
Sbjct: 110 DTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTAS 169
Query: 346 VTTDMEERFCAKVRAMGTSCITISHRPALVAFHD----------VVLSLDGEGEWRVHDK 395
+ + + R VR + + A+ A HD +VL DG RV
Sbjct: 170 LDINHQVRTLELVRRLVD-----DGKTAVAAIHDLDLAARYCDELVLLADG----RVRAA 220
Query: 396 RDGSSVVT 403
+ V+T
Sbjct: 221 GPPADVLT 228
|
Length = 402 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 58/238 (24%), Positives = 88/238 (36%), Gaps = 60/238 (25%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV----GSDLN 249
++ +L+L++EPG + G NG+GKS+L + L G G A G LN
Sbjct: 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLN 69
Query: 250 KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP---- 305
E P A R + + P Q +P E++ LL RYP
Sbjct: 70 GE----PLAAIDAPRLARLRAVLP----QAAQPAFAFSAREIV-------LLGRYPHARR 114
Query: 306 ------PEKEINWG---------------DELSLGEQQRLGMARLFYH---------KPK 335
+ EI W LS GE R+ AR+ P+
Sbjct: 115 AGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPR 174
Query: 336 FAILDECTSAVTTDMEERFCAKVRAMG----TSCITISHRPALVAFHDVVLSLDGEGE 389
+ +LDE T+A+ + R VR + + I H P L A H +++ +G
Sbjct: 175 YLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGA 232
|
Length = 272 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 200 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 239
+++ ++ G + I G NG+GKS+L +++ G++ SG +
Sbjct: 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
|
Length = 249 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 6e-04
Identities = 53/212 (25%), Positives = 80/212 (37%), Gaps = 33/212 (15%)
Query: 174 NYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP 233
F + +E V V + L ++ G L + G NGSGKS+L +L GL+
Sbjct: 315 QAFPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ 374
Query: 234 LVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGT---LRDQLIYPLTSDQEVEP------LT 284
SG I G + Y ++ ++AV T L DQL+ P + P L
Sbjct: 375 PQSGEILLDGKPVTAEQPEDY--RKLFSAVFTDFHLFDQLLGP--EGKPANPALVEKWLE 430
Query: 285 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 344
M L+ D + LS G+++RL + + +LDE
Sbjct: 431 RLKMAHKLELEDGRISNLK------------LSKGQKKRLALLLALAEERDILLLDEW-- 476
Query: 345 AVTTD-MEERFCAKV-----RAMGTSCITISH 370
A D R +V + MG + ISH
Sbjct: 477 AADQDPHFRREFYQVLLPLLQEMGKTIFAISH 508
|
Length = 547 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 6e-04
Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 30/166 (18%)
Query: 201 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 260
++ V PG + + GPNG+GKS+LF +L L+ G I+ G DL + P+
Sbjct: 20 VSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISV--AGHDLRRA----PRAAL 73
Query: 261 TAVGTLRDQ--LIYPLTSDQEV----------EPLTHGGMVELLKNVDL-EYLLDRYPPE 307
+G + Q L L+ Q + + ELL + L E D+
Sbjct: 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKV--- 130
Query: 308 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 353
EL+ G ++R+ +AR H+P +LDE T V D R
Sbjct: 131 ------RELNGGHRRRVEIARALLHRPALLLLDEPT--VGLDPASR 168
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 6e-04
Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 34/196 (17%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA---------KPGVGSDL 248
++++ L V PG + G NG+GKS+L +VL G+ G I + + L
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 249 NKEIFY----------VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 298
I Y V + Y + + +E+ +L V L+
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAA----MMLLRVGLK 136
Query: 299 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA-- 356
LD EK N LS+ +Q L +A+ K I+DE TS++T +
Sbjct: 137 VDLD----EKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIM 188
Query: 357 -KVRAMGTSCITISHR 371
++R GT+ + ISH+
Sbjct: 189 NQLRKEGTAIVYISHK 204
|
Length = 510 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 7e-04
Identities = 45/204 (22%), Positives = 79/204 (38%), Gaps = 30/204 (14%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915
L+ EI G+ L + G +G GK+++ R + G K + A + + + P
Sbjct: 24 LSLEIEAGELLALIGKSGCGKTTLLRAIAG--------FVKAAGLTGRIAIADRDLTHAP 75
Query: 916 QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL 975
++ ++P + E + A L + D + LK + G
Sbjct: 76 PHKRGLALLFQNYALFPHLKVEDNV-AFGLRAQKMPKADIAERVADALKLVGLG------ 128
Query: 976 LEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSV----DVEEQL 1031
DA + LS G QQR+ +AR +P +LDE +A ++ E++
Sbjct: 129 --------DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEI 180
Query: 1032 YRLAK---DMGITFVTSSQRPALI 1052
L + ++ I VT Q AL
Sbjct: 181 AALHEELPELTILCVTHDQDDALT 204
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 7e-04
Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 26/219 (11%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
I V P G +EN+ L ++ G + I G NGSGKS+L L GL G +
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61
Query: 242 PGVGS-------DLNKEIFYVPQRPYTA-VG-TLRDQLIYPLTSDQEVEPLTHGGMVELL 292
G+ + + K + V Q P T VG T+ + L + + + P +E+
Sbjct: 62 SGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG-PENLCLPP------IEIR 114
Query: 293 KNVDL---EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 349
K VD E L++Y LS G+ Q + +A + +P+ I DE TS + D
Sbjct: 115 KRVDRALAEIGLEKYRHRSP----KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPD 170
Query: 350 MEERFCAKVRAM---GTSCITISHRPALVAFHDVVLSLD 385
+++ + G + + I+H + D ++ +D
Sbjct: 171 SGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMD 209
|
Length = 274 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 7e-04
Identities = 52/156 (33%), Positives = 73/156 (46%), Gaps = 24/156 (15%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRV-LGGLWPLVSGHIAKPGVGSDLNKEI 252
G LV++ + +V+ G + + GPNG GK++L ++ LG L SG I G+ L E+
Sbjct: 331 GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA-DSGRIH---CGTKL--EV 384
Query: 253 FYVPQRPYTAV----GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD-RYPPE 307
Y Q + A T+ D L QEV MV L YL D + P+
Sbjct: 385 AYFDQ--HRAELDPEKTVMDNLA---EGKQEV-------MVNGRPRHVLGYLQDFLFHPK 432
Query: 308 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 343
+ + LS GE+ RL +ARLF ILDE T
Sbjct: 433 RAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPT 468
|
Length = 635 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 9e-04
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 16/110 (14%)
Query: 835 DSISFSKLDI-ITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS 893
D + FS + +TP K ++F++ G+ L V G GSGKSS L ++ G
Sbjct: 427 DGLFFSNFSLYVTPVLK----NISFKLEKGQLLAVAGSTGSGKSS-------LLMMIMGE 475
Query: 894 LTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRAL 943
L +PS+ + +G I + PQ + GT++D II+ LS +E ++
Sbjct: 476 L-EPSEGKIKHSGR---ISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSV 521
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 46/216 (21%), Positives = 79/216 (36%), Gaps = 55/216 (25%)
Query: 850 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC 909
K I G+ ++ G +GSGKS+ R+L L +G + ++I +++
Sbjct: 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVEL 65
Query: 910 G------IFYVPQR----PYTCLGTLRDQIIYPLS-----REEAELRALKLHGKGEKLVD 954
I V Q+ P+ T+ +E + +AL+L KLV
Sbjct: 66 REVRRKKIGMVFQQFALFPHM---TILQNTSLGPELLGWPEQERKEKALELL----KLVG 118
Query: 955 TTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFG 1014
Y D LS G QQR+G+AR +P
Sbjct: 119 LEEYEHRY---------------------------PDELSGGMQQRVGLARALAAEPDIL 151
Query: 1015 ILDECTNA----TSVDVEEQLYRLAKDMG--ITFVT 1044
++DE +A ++++L +L + I F+T
Sbjct: 152 LMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFIT 187
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 895
I L P + + EI G+ + + GP+G+GKS++ R L GL SG +
Sbjct: 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
|
Length = 258 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 49/216 (22%), Positives = 84/216 (38%), Gaps = 63/216 (29%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913
+ ++ G+ ++ G +GSGKS++ R+L L G +
Sbjct: 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEIL------------------ 86
Query: 914 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYL----KTILEG 969
+ + I LS AELR L+ + + S+ +T+LE
Sbjct: 87 -----------VDGKDIAKLSA--AELRELRRK-------KISMVFQSFALLPHRTVLEN 126
Query: 970 VRLSYLL------EREEVGWDA----NL-NWEDI----LSLGEQQRLGMARLFFHKPKFG 1014
V + EREE +A L + D LS G QQR+G+AR + P
Sbjct: 127 VAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDIL 186
Query: 1015 ILDECTNA----TSVDVEEQLYRLAKDMG--ITFVT 1044
++DE +A +++++L L + I F+T
Sbjct: 187 LMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT 222
|
Length = 386 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 61/247 (24%), Positives = 110/247 (44%), Gaps = 56/247 (22%)
Query: 829 NSTDYQDSISFSKLDII--TPSQKLLA-RQLTFEIVPGKSLLVTGPNGSGKS----SVFR 881
+ D +D ++ L+I QK+ A R L+F + G++L + G +GSGKS ++ R
Sbjct: 5 DELDARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMR 64
Query: 882 VLRGLWPVVSGS---LTKPSQHI---DEEAGS------GCGIFYVPQRPYTCLGTLRDQI 929
+L +V L + S+ + E++ + G + + Q P T L
Sbjct: 65 LLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNP----- 119
Query: 930 IYPLSREEAELRALKLH---GKGEKLVDTTNILDSYLKTILEGVRL---SYLLEREEVGW 983
++ + + AE +++LH + E +V+ K +L+ VR+ +L R
Sbjct: 120 VFTVGEQIAE--SIRLHQGASREEAMVEA--------KRMLDQVRIPEAQTILSR----- 164
Query: 984 DANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK------D 1037
+ LS G +QR+ +A +P I DE T A V ++ Q+ +L K
Sbjct: 165 -----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMS 219
Query: 1038 MGITFVT 1044
MG+ F+T
Sbjct: 220 MGVIFIT 226
|
Length = 623 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 54/220 (24%), Positives = 90/220 (40%), Gaps = 67/220 (30%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSG------------SLTKPSQHI 901
+ + +I K + GP+G GKS++ R L + ++ G ++ P +
Sbjct: 24 KDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83
Query: 902 DE---EAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNI 958
E G V Q+P ++ D + Y L+LHG +K +D I
Sbjct: 84 VELRRRVG------MVFQKPNPFPMSIYDNVAY----------GLRLHGIKDKELD--EI 125
Query: 959 LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI----------LSLGEQQRLGMARLFF 1008
++S LK A L W+++ LS G+QQRL +AR
Sbjct: 126 VESSLK-------------------KAAL-WDEVKDRLHKSALGLSGGQQQRLCIARALA 165
Query: 1009 HKPKFGILDECTNA----TSVDVEEQLYRLAKDMGITFVT 1044
KP+ ++DE T+A +++ +EE + L K I VT
Sbjct: 166 VKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVT 205
|
Length = 253 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 31/194 (15%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA- 240
I+ GV + V+V +L+ + G + GPNG+GKS++ R+L G+ G I
Sbjct: 5 IDLVGVSK-SYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV 63
Query: 241 ----KPGVGSDLNKEIFYVPQ-----RPYTAVGTLRDQLI----YPLTSDQEVEPLTHGG 287
P I VPQ +T R+ L+ Y S +E+E +
Sbjct: 64 LGEPVPSRARLARVAIGVVPQFDNLDPEFTV----RENLLVFGRYFGMSTREIEAV---- 115
Query: 288 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 347
+ LL+ LE D LS G ++RL +AR + P+ ILDE T+ +
Sbjct: 116 IPSLLEFARLESKADVRVA--------LLSGGMKRRLTLARALINDPQLLILDEPTTGLD 167
Query: 348 TDMEERFCAKVRAM 361
++R++
Sbjct: 168 PHARHLIWERLRSL 181
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 0.001
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 48/195 (24%)
Query: 862 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYVPQRPY 919
PG + V G NG+GKS++ R++ G+ + + EA G + Y+PQ P
Sbjct: 32 PGAKIGVLGLNGAGKSTLLRIMAGV-----------DKEFEGEARPAPGIKVGYLPQEPQ 80
Query: 920 -----TCLGTLR-------------DQIIYPLSREEAELRAL-KLHGKGEKLVDTTNI-- 958
T + ++I + +A+ AL G+ ++++D +
Sbjct: 81 LDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWD 140
Query: 959 LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1018
LDS L+ ++ +R WDA + LS GE++R+ + RL KP +LDE
Sbjct: 141 LDSQLEIAMDALRCP--------PWDAKV---TKLSGGERRRVALCRLLLEKPDMLLLDE 189
Query: 1019 CTN---ATSVDVEEQ 1030
TN A SV EQ
Sbjct: 190 PTNHLDAESVAWLEQ 204
|
Length = 556 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 182 IEFSGVKVV----TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 237
I S TP + L+L++ G + + G NG+GKS+L + G SG
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 238 HI 239
I
Sbjct: 62 QI 63
|
Length = 263 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 55/208 (26%), Positives = 83/208 (39%), Gaps = 62/208 (29%)
Query: 870 GPNGSGKSSVFRVLR---GLWP--VVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGT 924
GP+G GKS+ R L L P ++G+++ Q+I Y P
Sbjct: 38 GPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNI-----------YAPNEDVV---Q 83
Query: 925 LRDQI--------IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLL 976
LR Q+ +P S E + L+L G +K V LD ++T L+ +
Sbjct: 84 LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAV-----LDEAVETSLKQAAI---- 134
Query: 977 EREEVGWDANLNWEDI----------LSLGEQQRLGMARLFFHKPKFGILDECTNA---- 1022
W+++ LS G+QQR+ +AR+ KP +LDE T+A
Sbjct: 135 ------------WDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPI 182
Query: 1023 TSVDVEEQLYRLAKDMGITFVTSSQRPA 1050
+S +E L L I VT S A
Sbjct: 183 SSTQIENMLLELRDQYTIILVTHSMHQA 210
|
Length = 252 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 31/161 (19%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 257
++ ++ +E G + GPNG+GK++ ++L GL SG + G+ ++ F
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKF---L 93
Query: 258 RPYTAVGTLRDQL---------------IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD 302
R V + QL IY L + + L + ELL DLE LLD
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDE--LSELL---DLEELLD 148
Query: 303 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 343
P + +LSLG++ R +A H+P+ LDE T
Sbjct: 149 T--PVR------QLSLGQRMRAEIAAALLHEPEILFLDEPT 181
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 53/204 (25%), Positives = 83/204 (40%), Gaps = 66/204 (32%)
Query: 870 GPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY---------------- 913
GP+GSGKS+ R SL + + ID +G I Y
Sbjct: 53 GPSGSGKSTYLR-----------SLNRMNDTIDIARVTG-QILYRGIDINRKEINVYEMR 100
Query: 914 -----VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 968
V QRP ++ + I + AL+ G +K +LD ++T L+
Sbjct: 101 KHIGMVFQRPNPFAKSIYENITF----------ALERAGVKDK-----KVLDEIVETSLK 145
Query: 969 GVRLSYLLEREEVGWDA---NLNWEDI-LSLGEQQRLGMARLFFHKPKFGILDECTNA-- 1022
L WD +L+ + LS G+QQRL +AR KP ++DE +A
Sbjct: 146 QAAL----------WDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALD 195
Query: 1023 --TSVDVEEQLYRLAKDMGITFVT 1044
+++ +EE ++ L K+ I VT
Sbjct: 196 PISTMQLEETMFELKKNYTIIIVT 219
|
Length = 267 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.001
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 312 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME---ERFCAKVRAMG-TSCIT 367
+G LS G++QR+ +AR +PK +LDE TS++ ++ E E+ ++ + IT
Sbjct: 1355 YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIIT 1414
Query: 368 ISHRPALVAFHDVVL 382
I+HR A + D ++
Sbjct: 1415 IAHRIASIKRSDKIV 1429
|
Length = 1466 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 197 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS-----GHIAKPGVG------ 245
+++N+ L + S + GP+G GKS+ R L + L+ GHI GV
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 246 --SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 303
+L K++ V Q+P ++ D + Y L E + VE +++ L D
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVE--ESLKAAALWDE 135
Query: 304 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 346
+K LS G+QQRL +AR P+ ++DE SA+
Sbjct: 136 V-KDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSAL 177
|
Length = 250 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 27/156 (17%)
Query: 202 TLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 261
L VE G + I GP+G+GKS+L ++ G SG + G + +RP
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQ----DHTTTPPSRRP-- 72
Query: 262 AVGTL--RDQLIYPLTSDQEVEPLTHGG----------MVELLKNVDLEYLLDRYPPEKE 309
V L + L LT Q + + G + + + + +E LL R P
Sbjct: 73 -VSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP---- 127
Query: 310 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
+LS G++QR+ +AR + +LDE SA
Sbjct: 128 ----GQLSGGQRQRVALARCLVREQPILLLDEPFSA 159
|
Length = 232 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 49/199 (24%), Positives = 77/199 (38%), Gaps = 41/199 (20%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG----------------HIAK 241
+ +L+ V+PG ++ GPNG+GK++L V+ G G IA+
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 242 PGVGSDLNKEIFY----VPQRPYTAVG---TLRDQLIYPLTSDQEVEPLTHGGMVELLKN 294
G+G K + V + A+ ++ L L +++ + ELL
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR------IDELLAT 134
Query: 295 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF 354
+ L DR LS G++Q L + L PK +LDE A TD E
Sbjct: 135 IGLGDERDRL--------AALLSHGQKQWLEIGMLLAQDPKLLLLDEPV-AGMTDAETEK 185
Query: 355 CA---KVRAMGTSCITISH 370
A K A S + + H
Sbjct: 186 TAELLKSLAGKHSILVVEH 204
|
Length = 249 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 34/171 (19%)
Query: 195 NVLVENLTLKVEPGSNLLITGPNGSGKSS----LFRVL---GGLW----PLVSGHIAKPG 243
NV+V+N++ + PG L + G +GSGKS+ L R++ G +W PL H
Sbjct: 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPL---HNLNRR 355
Query: 244 VGSDLNKEIFYVPQRPYTAVGTLRD--QLI-------YPLTSDQEVEPLTHGGMVELLKN 294
+ I V Q P +++ + Q+I P S + E M E+ +
Sbjct: 356 QLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLD 415
Query: 295 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
+ + RYP E S G++QR+ +AR KP ILDE TS+
Sbjct: 416 PETRH---RYPAE--------FSGGQRQRIAIARALILKPSLIILDEPTSS 455
|
Length = 529 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 61/252 (24%), Positives = 104/252 (41%), Gaps = 50/252 (19%)
Query: 795 ELSGGINRI-----FELEELLDAAQPGDDEISGSSQHKWNSTDYQ--DSISFSKLDIITP 847
EL G +NR+ ++ LL+ + S+ + Y +I+F +P
Sbjct: 438 ELEGDLNRLDDVLRNPVDPLLEEEEAPAA----GSEPSPRLSGYVELRNITFG----YSP 489
Query: 848 SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEE 904
+ L + + PG+ + + G +GSGKS++ +++ GL+ SG + P + I E
Sbjct: 490 LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPRE 549
Query: 905 AGSGCGIFYVPQRPYTCLGTLRDQIIY--PLSREEAELRALK---LHGKGEKLVDTTNIL 959
+ + V Q + GT+RD + P + +RA K +H T+
Sbjct: 550 VLANS-VAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHD------VITSRP 602
Query: 960 DSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDEC 1019
Y + EG AN LS G++QRL +AR P ILDE
Sbjct: 603 GGYDAELAEG--------------GAN------LSGGQRQRLEIARALVRNPSILILDEA 642
Query: 1020 TNATSVDVEEQL 1031
T+A + E+ +
Sbjct: 643 TSALDPETEKII 654
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 27/191 (14%)
Query: 847 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQH--IDEE 904
P + L +I PG+ + + GP+GSGKS++ ++L+ L+ G + I +
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADP 526
Query: 905 AGSGCGIFYVPQRPYTCLGTLRDQIIY--PLSREEAELRALKLHGKGEKLVDTTNILDSY 962
A + V Q ++RD I P + E + A KL G +
Sbjct: 527 AWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHD------------ 574
Query: 963 LKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA 1022
+ + Y E E G AN LS G++QR+ +AR P+ I DE T+A
Sbjct: 575 ---FISELPQGYNTEVGEKG--AN------LSGGQRQRIAIARALVGNPRILIFDEATSA 623
Query: 1023 TSVDVEEQLYR 1033
+ E + R
Sbjct: 624 LDYESEALIMR 634
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLY---RLAKDMGITFV 1043
LS+GE+Q + +AR + ILDE T A + E+L+ R + G+ +
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 51/178 (28%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--------AGS 907
++ + G+ + + GPNG+GK++ F ++ G+ P +G++ ID+E A +
Sbjct: 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNII-----IDDEDISLLPLHARA 76
Query: 908 GCGIFYVPQRP--YTCLGTLRD-----QIIYPLSREEAELRALKLHGKGEKLVDTTNILD 960
GI Y+PQ + L + QI LS E+ E RA +L
Sbjct: 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANEL--------------- 121
Query: 961 SYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1018
+E + +L R+ +G LS GE++R+ +AR PKF +LDE
Sbjct: 122 ------MEEFHIEHL--RDSMG--------QSLSGGERRRVEIARALAANPKFILLDE 163
|
Length = 241 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 994 SLGEQQRLGMARLFFHKPKFGILDECTNATS-VDVEE--QLYRLAKDMGITFVTSS 1046
SLG +QRLG+A + PK ILDE TN + ++E +L R + GIT + SS
Sbjct: 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSS 181
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 850 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 895
KLL L+F++ PG + V GPNG+GKS++FR++ G SG++
Sbjct: 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK 380
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 58/241 (24%), Positives = 90/241 (37%), Gaps = 63/241 (26%)
Query: 183 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSG--- 237
+F G +V+ +N++ +E G L I G +G+GKS L VL G+ + SG
Sbjct: 9 KFDGKEVL--------KNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 238 -HIAK-----------------PGVGSDLNKEI--FYVPQRPYTAVGTLRD----QLIYP 273
H+A P G L E F+ R Q +
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA 120
Query: 274 LTSDQEV-----EPLTHGG---------MVELLKNVDLEYLLDRYPPEKEINWGDELSLG 319
L D V E L G V+L++ V L + + + +LS G
Sbjct: 121 LYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRI--------THIARDLSGG 172
Query: 320 EQQRLGMARLFYHKPKFAILDECTSAV---TTDM-EERFCAKVRAMGTSCITISHRPALV 375
E+QR+ +AR +P + DE T + T + V+A G S + SH P ++
Sbjct: 173 EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232
Query: 376 A 376
Sbjct: 233 E 233
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.002
Identities = 53/210 (25%), Positives = 85/210 (40%), Gaps = 66/210 (31%)
Query: 179 ANYIEFSGVKV--VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 236
A YI ++ +V V P ++++++L PG+ + + G NG+GKS+L R++ G+
Sbjct: 3 AQYI-YTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE 61
Query: 237 GH-IAKPG--VGSDLNKEIFYVPQRPY------------TAVGTLRDQL-----IYPLTS 276
G PG VG Y+PQ P V ++ L IY +
Sbjct: 62 GEARPAPGIKVG--------YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYA 113
Query: 277 DQEVEPLTHGGMVELLK---------------NVD--LEYLLD--RYPPEKEINWGDE-- 315
+ + + L ++D LE +D R PP D
Sbjct: 114 EPDAD------FDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP------WDAKV 161
Query: 316 --LSLGEQQRLGMARLFYHKPKFAILDECT 343
LS GE++R+ + RL KP +LDE T
Sbjct: 162 TKLSGGERRRVALCRLLLEKPDMLLLDEPT 191
|
Length = 556 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 836 SISFSKLDII----TPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVS 891
SI F +D I TP +K ++FE+ G + + G GSGKS++ + L S
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 892 GSLTKPSQHIDEEAGS 907
G++T HI E G+
Sbjct: 62 GTITIAGYHITPETGN 77
|
Length = 287 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 58/249 (23%), Positives = 100/249 (40%), Gaps = 54/249 (21%)
Query: 829 NSTDYQDSISFSKLDIITPSQKL--------LARQLTFEIVPGKSLLVTGPNGSGKSSVF 880
++ I + ++ +Q L + + +I + + GP+G GKS+
Sbjct: 8 VQVKNEEKIETAPKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYI 67
Query: 881 RVLR---GLWPVV--SGSLTKPSQHI------DEEAGSGCGIFYVPQRPYTCLGTLRDQI 929
+ L L P V +G + Q+I EE + G+ + Q+P ++ D +
Sbjct: 68 KTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVF--QKPNPFPKSIYDNV 125
Query: 930 IYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 989
Y K+HG +K LD ++ L G + WD +
Sbjct: 126 TY----------GPKIHGIKDK-----KTLDEIVEKSLRGAAI----------WDELKDR 160
Query: 990 EDI----LSLGEQQRLGMARLFFHKPKFGILDECTNA----TSVDVEEQLYRLAKDMGIT 1041
LS G+QQRL +AR +P ++DE T+A +++ VEE + L KD I
Sbjct: 161 LHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSII 220
Query: 1042 FVTSSQRPA 1050
VT + + A
Sbjct: 221 IVTHNMQQA 229
|
Length = 271 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 47/207 (22%)
Query: 184 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---- 239
+SGV+V+ + + + G + G NG+GKS+L +++ G+ P SG +
Sbjct: 21 YSGVEVL--------KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGG 72
Query: 240 -----AKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-------VEPLTHGG 287
P L I+ VPQ P L++P S +E +
Sbjct: 73 NPCARLTPAKAHQLG--IYLVPQEP----------LLFPNLSVKENILFGLPKRQASMQK 120
Query: 288 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 347
M +LL + + LD + G L + ++Q + + R + ILDE T+++T
Sbjct: 121 MKQLLAALGCQLDLD-------SSAG-SLEVADRQIVEILRGLMRDSRILILDEPTASLT 172
Query: 348 TDMEERFCAKVRAM---GTSCITISHR 371
ER +++R + G + ISH+
Sbjct: 173 PAETERLFSRIRELLAQGVGIVFISHK 199
|
Length = 510 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 56/194 (28%), Positives = 84/194 (43%), Gaps = 24/194 (12%)
Query: 205 VEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQR 258
++PG + I G GSGKSSL + + G I G+ L + + Q
Sbjct: 44 IKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQD 103
Query: 259 PYTAVGTLRDQLI--YPLTSDQEVEPLTHGGMVELLKNV--DLEYLLDRYPPEKEINWGD 314
P G++R L T D+ E L + LKN+ L LD E G+
Sbjct: 104 PILFSGSIRFNLDPECKCTDDRLWEALE----IAQLKNMVKSLPGGLDAVVTEG----GE 155
Query: 315 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM-EERFCAKVRAMG---TSCITISH 370
S+G++Q +AR F K I+DE T+++ DM E KV + +TI+H
Sbjct: 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASI--DMATENILQKVVMTAFADRTVVTIAH 213
Query: 371 RPALVAFHDVVLSL 384
R + + D+VL L
Sbjct: 214 RVSTILDADLVLVL 227
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 35/176 (19%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
++ V+ +++ + L V G +++ GP+G GKS+L R++ GL + SG I
Sbjct: 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWI 63
Query: 242 PG-VGSDL---NKEIFYVPQR----PYTAVGTLRDQLIYPL--------TSDQEVEPLTH 285
G V ++L +++I V Q P+ +V R+ + Y L ++ V
Sbjct: 64 GGRVVNELEPADRDIAMVFQNYALYPHMSV---RENMAYGLKIRGMPKAEIEERVA---- 116
Query: 286 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
E + ++LE LLDR P ELS G++QR+ M R +P + DE
Sbjct: 117 ----EAARILELEPLLDRKP--------RELSGGQRQRVAMGRAIVREPAVFLFDE 160
|
Length = 356 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 239
L +NL L +E G L I G NG GK++L R L G SG +
Sbjct: 331 NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
|
Length = 530 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 19/157 (12%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 257
++++ L+V+ G L+I G NGSGKS++ + + L G + G+ + + ++ +
Sbjct: 26 LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRN 85
Query: 258 RPYTAVGTLRDQLIYPLTSDQ--------EVEPLTHGGMV-ELLKNVDL-EYLLDRYPPE 307
+ +Q++ + + + P V E LK V + EY R+ P
Sbjct: 86 KAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEY--RRHAPH 143
Query: 308 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 344
LS G++QR+ +A + +P+ I DE T+
Sbjct: 144 L-------LSGGQKQRVAIAGILAMRPECIIFDEPTA 173
|
Length = 280 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 46/186 (24%), Positives = 70/186 (37%), Gaps = 33/186 (17%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS---LTKPSQHIDEEAGSGCG-I 911
++FEI G+ + G NG+GKS+ ++L GL SG K EE G +
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102
Query: 912 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR 971
+ + L L + + E+ + + + L + ILD LEG
Sbjct: 103 MGQKLQLWWDLPALDS---LEVLKLIYEIPDDEFAERLDFLTE---ILD------LEGF- 149
Query: 972 LSYLLEREEVGWDANLNWE-DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ 1030
L W LSLG++ R +A H PK LDE T V+ +
Sbjct: 150 ---------------LKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQAN 194
Query: 1031 LYRLAK 1036
+ K
Sbjct: 195 IREFLK 200
|
Length = 325 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.003
Identities = 44/212 (20%), Positives = 81/212 (38%), Gaps = 43/212 (20%)
Query: 849 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSG 908
++ + R L EI PG + V G +G+GK+++ R++ G +P E
Sbjct: 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEV---- 450
Query: 909 CGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKL----HGKGEKLVDTTNILDSYLK 964
P + L P E L L+ ++++ + D+ L
Sbjct: 451 ---------PKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLY 501
Query: 965 TILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE----CT 1020
R + E LS G+++R +A+L +P ++DE
Sbjct: 502 ------RRKF---SE-------------LSTGQKERAKLAKLLAERPNVLLIDEFAAHLD 539
Query: 1021 NATSVDVEEQLYRLAKDMGITFVTSSQRPALI 1052
T+V V ++ LA++ GIT + + RP +
Sbjct: 540 ELTAVRVARKISELAREAGITLIVVTHRPEVG 571
|
Length = 593 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 35/225 (15%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGL--WPVVSGSLTKPSQHIDEEAGSGCGI 911
+ ++F I G+ L + G +G+GKS + VLRG+ + SG + ++ CG
Sbjct: 17 KNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEK-----CGY 71
Query: 912 FYVPQRPYT----CLGTLRDQIIYPLSREEAELRALK------------LHGKGEKLVDT 955
P + C GTL + + + + R ++ L+G L
Sbjct: 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLD-- 129
Query: 956 TNILDSYLKTILEGV----RLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKP 1011
N+L++ + EG R L+E ++ D LS GE+QR+ +AR +P
Sbjct: 130 -NVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARD-LSGGEKQRVVLARQLAKEP 187
Query: 1012 KFGILDECTNA----TSVDVEEQLYRLAKDMGITFVTSSQRPALI 1052
+ DE T T+ V L K GI+ V +S P +I
Sbjct: 188 FLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 44/169 (26%)
Query: 194 GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI------------A 240
G+V++ +++ L + G ++ GP+G GKS+L R++ GL + SG + A
Sbjct: 14 GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA 73
Query: 241 KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT--------SDQEVEPLTHGGMVELL 292
+ GVG Y P+ +V + + + L +Q V + E+L
Sbjct: 74 ERGVGMVFQSYALY----PHLSVA---ENMSFGLKLAGAKKEEINQRVNQVA-----EVL 121
Query: 293 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
+ L +LLDR P LS G++QR+ + R +P +LDE
Sbjct: 122 Q---LAHLLDRKP--------KALSGGQRQRVAIGRTLVAEPSVFLLDE 159
|
Length = 369 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 34/190 (17%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG-------HIAKPGVGSDL-- 248
++ + L ++ G + + G +G GKS+L ++ GL SG I +PG +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 249 -NKEIF---YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRY 304
N + V + AV + L + + + + E + V L D+
Sbjct: 61 QNYSLLPWLTVRENIALAVDRVLPDL--SKSERRAI-------VEEHIALVGLTEAADKR 111
Query: 305 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE---CTSAVT-TDMEERFCAKVRA 360
P +LS G +QR+ +AR +PK +LDE A+T +++E
Sbjct: 112 P--------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEE 163
Query: 361 MGTSCITISH 370
+ + ++H
Sbjct: 164 HRVTVLMVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 25/163 (15%)
Query: 195 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFY 254
++++++ L + PGS + + G NG+GKS+L ++L G VSG I L K I
Sbjct: 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIG-------LAKGI-- 375
Query: 255 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR-----YPPEKE 309
+ Y A + QL + L +D+ PL H + L + L D + +K
Sbjct: 376 --KLGYFA----QHQLEF-LRADE--SPLQH--LARLAPQELEQKLRDYLGGFGFQGDKV 424
Query: 310 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 352
S GE+ RL +A + + +P +LDE T+ + DM +
Sbjct: 425 TEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQ 467
|
Length = 638 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 56/203 (27%), Positives = 79/203 (38%), Gaps = 51/203 (25%)
Query: 870 GPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIF--------------YVP 915
GP+G GKS+ R + V K ID G ++ V
Sbjct: 38 GPSGCGKSTFLRCFNRMNDFVPNCKVKGELDID-----GIDVYSVDTNVVLLRAKVGMVF 92
Query: 916 QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL 975
Q+P ++ D + Y KLHG L LD ++ L V L
Sbjct: 93 QKPNPFPKSIYDNVAY----------GPKLHG----LAKNKKKLDEIVEKSLTSVGL--- 135
Query: 976 LEREEVG---WDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE-CTN----ATSVDV 1027
EE+G D+ LS G+QQRL +AR KP ++DE C+ AT+V +
Sbjct: 136 --WEELGDRLKDSAFE----LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNV-I 188
Query: 1028 EEQLYRLAKDMGITFVTSSQRPA 1050
E + L K+ I VT S + A
Sbjct: 189 ENLIQELKKNFTIIVVTHSMKQA 211
|
Length = 251 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.003
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 993 LSLGEQQRLGMARLFFHKPKFGILDECTNA----TSVDVEEQLYRLAKDMGITFVTSSQR 1048
LS G+QQRL +AR KP ++DE T+A +++ +E+ + L K+ I VT + +
Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQ 207
Query: 1049 PA 1050
A
Sbjct: 208 QA 209
|
Length = 251 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 44/182 (24%)
Query: 200 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGV---GSDLN-- 249
+ L +E + GP+G GKS+ R L + L+ G + G SD++
Sbjct: 21 KINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80
Query: 250 ---KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN-VDLEYLLDRYP 305
K + V Q+P ++ D + Y P THG +K+ L+ ++++
Sbjct: 81 QLRKRVGMVFQQPNPFPMSIYDNVAY--------GPRTHG-----IKDKKKLDEIVEKSL 127
Query: 306 PEKEINWGDE-----------LSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDM 350
+ W DE LS G+QQRL +AR +P+ ++DE TSA+ T +
Sbjct: 128 KGAAL-W-DEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKI 185
Query: 351 EE 352
EE
Sbjct: 186 EE 187
|
Length = 250 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 993 LSLGEQQRLGMARLFFHKPKFGILDECT-NATSV---DVEEQLYRLAKDMGITFVTSSQR 1048
LS G++QRL +AR KPK ++DE T N V +EE L+ L K+ I VT S
Sbjct: 150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHS-- 207
Query: 1049 PA 1050
PA
Sbjct: 208 PA 209
|
Length = 253 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 23/184 (12%)
Query: 182 IEFSGVKVVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
IEF V P V + N+ K+ G + + G +GSGKS++ +L + + G I
Sbjct: 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401
Query: 241 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLT---SDQEVEP---LTHG-G 287
G + L ++ V Q + T+ + + Y T S +++E + +
Sbjct: 402 LDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMD 461
Query: 288 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 347
+ + N LD E G LS G++QR+ +AR ILDE TSA+
Sbjct: 462 FINKMDNG-----LDTVIGEN----GVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
Query: 348 TDME 351
T+ E
Sbjct: 513 TESE 516
|
Length = 582 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.004
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS 893
++F + PG+ + GPNG+GK+++F ++ G SGS
Sbjct: 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGS 56
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 0.004
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 993 LSLGEQQRLGMARLFFHKPKFGILDECTN 1021
LS GE+ RL +A+L P +LDE TN
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTN 99
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.004
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 850 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC 909
K+L R ++ + GK +V G GSGKS++ + L + + G +
Sbjct: 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERS---------- 722
Query: 910 GIFYVPQRPYTCLGTLRDQIIYPLSREEAEL 940
I YVPQ+ + T+R I++ + A L
Sbjct: 723 -IAYVPQQAWIMNATVRGNILFFDEEDAARL 752
|
Length = 1560 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 22/156 (14%)
Query: 200 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI------AKPGVGSDLNKEIF 253
+++ + G I G NGSGKS++ +++ G+ + SG I L K I
Sbjct: 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86
Query: 254 YVPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMV----ELLKNVDLEYLLDRYPPEK 308
V Q P VG++ + Y + E + + M E LK VD +L+R E
Sbjct: 87 IVFQNPDNQFVGSI---VKYDVAFGLENHAVPYDEMHRRVSEALKQVD---MLERADYEP 140
Query: 309 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 344
LS G++QR+ +A + P ILDE TS
Sbjct: 141 N-----ALSGGQKQRVAIAGVLALNPSVIILDEATS 171
|
Length = 269 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1075 | |||
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-128 Score=1162.88 Aligned_cols=967 Identities=19% Similarity=0.253 Sum_probs=643.8
Q ss_pred CcchhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 6 SPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGAT 85 (1075)
Q Consensus 6 ~~~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (1075)
++.+.++..++++.-++.-....+...++.+|.+|+||+.|.+++.+.+ ....+..+++..+.++...+...+
T Consensus 192 a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L---~~~~k~gi~~g~~~G~~~G~~~~~---- 264 (1228)
T KOG0055|consen 192 ARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKAL---ENALKFGIKKGLFKGLGLGFTFFL---- 264 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHH----
Confidence 4456677777777777777777788888888999999999986444433 333343444444444433322211
Q ss_pred HHHHHHHhhhhccccccCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 001446 86 VAVILIIEPFFAGNLKPDT-STLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIED 164 (1075)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~ 164 (1075)
+-..+.+..|+++.+.... .+.|. ++. .+.+++... .++++..+.+..+...+.++.++++.++..+.++...
T Consensus 265 ~~~~~a~~~WyG~~li~~~~~~~g~--v~~---v~~~vl~g~-~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~ 338 (1228)
T KOG0055|consen 265 LFASYALAFWYGSTLILNGGYNGGD--VIT---VFFSVLIGG-MSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYS 338 (1228)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCce--EEE---EEeehhhhh-hhhhccccchHHHhccccchHHHHHHhcCCCCCCccc
Confidence 1122334567876654332 12221 111 112222333 3678888888999999999999999988776654322
Q ss_pred CCCCCCCCCCCCCCCccEEEEeEEEEcCCC--CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeC
Q 001446 165 KSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 242 (1075)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~--~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~ 242 (1075)
.. ........+.++|+||+|+||.. .++|+|+||+|++|+.++|+|||||||||++++|.|+|+|++|+|.+|
T Consensus 339 ~~-----~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~id 413 (1228)
T KOG0055|consen 339 KG-----GRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLID 413 (1228)
T ss_pred cc-----CCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEc
Confidence 10 00111235689999999999964 379999999999999999999999999999999999999999999999
Q ss_pred CcC------ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCC
Q 001446 243 GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWG 313 (1075)
Q Consensus 243 ~~~------~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g 313 (1075)
|.+ +.+|++||.|.|+|.+|.+||+|||.|+.+ ..+.+++.++++..+.++++..+|.+.++ +.|
T Consensus 414 G~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~------dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g 487 (1228)
T KOG0055|consen 414 GEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKP------DATREEIEEAAKAANAHDFILKLPDGYDTLVGERG 487 (1228)
T ss_pred CccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCC------cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCC
Confidence 976 457889999999999999999999999964 35678899999999999999999987655 567
Q ss_pred CCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCCCcEE
Q 001446 314 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWR 391 (1075)
Q Consensus 314 ~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~ 391 (1075)
.+|||||||||||||||+++|+||||||||||||+++++.+.+.|.+ .|+|.|+|+||++.++.+|+|+++++ |.+
T Consensus 488 ~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~--G~I 565 (1228)
T KOG0055|consen 488 VQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEE--GKI 565 (1228)
T ss_pred CCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEEC--CEE
Confidence 89999999999999999999999999999999999999999999975 59999999999999999999999986 457
Q ss_pred EecCCCCcccccccccccc-ccccccc----chhhhhHHHhhhhcccccccCCcc-hhhhHHHHhhcCCCCCCCCCCCCc
Q 001446 392 VHDKRDGSSVVTKSGINMI-KSSETDR----QSDAMAVEQAFVTAKKDSAFSNPK-AQSYVSEVIAASPIADHNVPLPVF 465 (1075)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1075)
++.+.|++++...+.+... ..++.+. ..+..........+...+...... .......... . ..++. ....
T Consensus 566 vE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~-~-~~~~e--~~~~ 641 (1228)
T KOG0055|consen 566 VEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLS-V-KPEGE--DPEE 641 (1228)
T ss_pred EEecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCcccccccc-c-ccccc--cccc
Confidence 8888887776543211100 0000000 000000000000000000000000 0000000000 0 00000 0000
Q ss_pred ccccCCCCcchhhHHhHHHhhhcccchhhhHHHHHHH----HHHHHHHHHHHHhhhhcchHHHHHHhcCHHHHHHHHHHH
Q 001446 466 PQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVA----FLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVS 541 (1075)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (1075)
+..........++++.+.+..++++ ..+.+.+++ ..+++. .++..+..+.....+..........+.+++++
T Consensus 642 ~~~~~~~~~s~~~i~k~~~pe~~~l---~lG~i~a~i~G~~~P~fa~-~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~ 717 (1228)
T KOG0055|consen 642 PVSEEDEKVSFWRIFKLNKPEWPYL---LLGSLGAAIRGATYPLFAY-VFSQVLEAFYPPDDDELKREVRAWALIFLGLG 717 (1228)
T ss_pred ccccccccccHHHHHHhccchhHHH---HHHHHHHHHhhhhHHHHHH-HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 0000001111233333332222221 111111111 111111 11111111110000000000001111234445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHH----H--
Q 001446 542 VLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSG----L-- 615 (1075)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~----~-- 615 (1075)
++..+...+..+.+....+++..+.|..+++++++. +..|||..+++ +.+.+|+++|...+...+.. +
T Consensus 718 ~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~q---d~~wFD~~~ns---g~l~~RLa~Da~~vr~~v~~rl~~vv~ 791 (1228)
T KOG0055|consen 718 IVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQ---EVGWFDDPENS---GALSSRLATDASNVRAAVGDRLSLVVQ 791 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCcccCCCccc---hHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 555555666677888888899889998888888763 56899876654 67889999998886544332 2
Q ss_pred -hhhhhHhHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH-HHHHhccccccccHHHHh-hchhhhhHHHHHHHhhHHhh
Q 001446 616 -VTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLG-FLRSVTPEFGDLTSREQQ-LEGTFRFMHERLRAHAESVA 692 (1075)
Q Consensus 616 -~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~i~ 692 (1075)
+..++.+++..++++|+|++++.+ .++++.+..+ ..+.. .....+... .+...+ ...+..+|.+||+
T Consensus 792 ~~~~~~~~iiiaf~~~W~lalv~la-----~~Pll~~~~~~~~~~~----~~~~~~~~~~~~ea~~-iA~eai~NIrTV~ 861 (1228)
T KOG0055|consen 792 NIAAVIIGIIIAFIYGWRLALVVLA-----TFPLLILSGYLQKKFL----KGFSKDDKKAYEEASK-IAIEAVSNIRTVA 861 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHH-HHHHHHHhHHHHH
Confidence 233344555568899999987521 1111111111 11211 111222222 222223 3344556888999
Q ss_pred hcCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHH
Q 001446 693 FFGGGAREKAMIESRFRELLE-HSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRF 771 (1075)
Q Consensus 693 ~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~ 771 (1075)
+|+.|+ + +.+.|.+.++ ..+...++.++.++.. ..++......++++++|+..+...... +...+ . -
T Consensus 862 al~~e~---~-~~~~y~~~l~~p~~~~~~~~~i~gl~f--~~sqs~~~~~~A~~f~~G~~Li~~g~~--~~~~~--~--~ 929 (1228)
T KOG0055|consen 862 ALCAEE---K-FMELYKEELEKPRKSSFKRGLISGLGF--GFSQSLLFFVYALSFWYGARLISNGEM--TFEDV--F--R 929 (1228)
T ss_pred HHhhHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHhcCCc--CHHHH--H--H
Confidence 987533 3 3445555554 3445556666666543 333444566677888887654322110 01111 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCCcc-
Q 001446 772 LASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQK- 850 (1075)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~- 850 (1075)
+...+....+.+++...+.|++.....|+.+|+++.+.++..+... ..+ ..+| ..+|+|+|+||+|+||++|
T Consensus 930 vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~--~~~---~~~~--~~~G~I~~~~V~F~YPsRP~ 1002 (1228)
T KOG0055|consen 930 VFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDS--TSG---GKLP--NVKGDIEFRNVSFAYPTRPD 1002 (1228)
T ss_pred HHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCC--CCC---Cccc--cceeEEEEeeeEeeCCCCCC
Confidence 1223334556778888899999999999999999998776444321 111 0122 3589999999999999854
Q ss_pred -ccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhh
Q 001446 851 -LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRD 927 (1075)
Q Consensus 851 -~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~ 927 (1075)
+||+|+||+|++||+||+||||||||||++.+|+|||||.+|.|.|||+||+++ +++|++|++|+|||.||++||||
T Consensus 1003 ~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrE 1082 (1228)
T KOG0055|consen 1003 VPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRE 1082 (1228)
T ss_pred chhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHH
Confidence 799999999999999999999999999999999999999999999999999998 67999999999999999999999
Q ss_pred hhcCCC-C-hHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHH
Q 001446 928 QIIYPL-S-REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMA 1004 (1075)
Q Consensus 928 NL~~p~-~-~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiA 1004 (1075)
||.|+. . +++++++|+++|+.| .++.++|+||||.+ +.|.+||||||||||||
T Consensus 1083 NI~YG~~~vs~~eIi~Aak~ANaH------------------------~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIA 1138 (1228)
T KOG0055|consen 1083 NIAYGSEEVSEEEIIEAAKLANAH------------------------NFISSLPQGYDTRVGERGVQLSGGQKQRIAIA 1138 (1228)
T ss_pred HHhccCCCCCHHHHHHHHHHhhhH------------------------HHHhcCcCcccCccCcccCcCCchHHHHHHHH
Confidence 999983 2 345555676666544 45566788999986 68999999999999999
Q ss_pred HHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1005 RLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1005 RAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
||++||||||||||||||||.++|+.+|+.+.. .|+|+|+|||||+||+-.|.+.++.+|.
T Consensus 1139 RAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~ 1201 (1228)
T KOG0055|consen 1139 RAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGK 1201 (1228)
T ss_pred HHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCE
Confidence 999999999999999999999999999999865 5999999999999999999999998885
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-125 Score=1167.33 Aligned_cols=950 Identities=19% Similarity=0.246 Sum_probs=626.4
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 9 FGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAV 88 (1075)
Q Consensus 9 ~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (1075)
..++..++.+..++.-...+.+..+++.||+|++|+.+.+++.+..+...+..++. .....+..++..... .+..
T Consensus 365 ~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~----~~~~~~~~~~~~~~p-~lv~ 439 (1381)
T KOG0054|consen 365 IAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKS----AYLSALNSFLNFFSP-VLVS 439 (1381)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHH
Confidence 34444445555566667889999999999999999999988777665554444332 222222222211111 1111
Q ss_pred HHHHhhh--hccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCC
Q 001446 89 ILIIEPF--FAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKS 166 (1075)
Q Consensus 89 ~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~ 166 (1075)
++.+..| +.++.......+....+|..++ ..+..+...+..+.+.....+|+.+|+..++.... ...
T Consensus 440 ~~tF~~~v~~~~~~lt~~~aF~slalfniLr----------~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~-~~~ 508 (1381)
T KOG0054|consen 440 VVTFVVFVLLLGNLLTASTAFTSLALFNILR----------FPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPD-SVE 508 (1381)
T ss_pred HHHHHHHhhccCccccHhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcc-ccc
Confidence 1111111 1121111111222222333322 23333445556667777888888888765432211 110
Q ss_pred CCCCCCCCCCCCCccEEEEeEEEEcCC--CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCc
Q 001446 167 PQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV 244 (1075)
Q Consensus 167 ~~~~~~~~~~~~~~~i~~~~v~~~~~~--~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~ 244 (1075)
. .........++++|.++.+.. ..+.|+|+||+|++|+.++|+||.||||||||.+|+|+++..+|+|.++|
T Consensus 509 ~-----~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g- 582 (1381)
T KOG0054|consen 509 R-----SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG- 582 (1381)
T ss_pred c-----CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-
Confidence 0 011123456999999999854 34599999999999999999999999999999999999999999999988
Q ss_pred CccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChhHH
Q 001446 245 GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQ 321 (1075)
Q Consensus 245 ~~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqk 321 (1075)
.++||||.||++++||||||+||.++ ++++++++++.|.|.++++.+|.++.+ ++|.+||||||
T Consensus 583 ------siaYv~Q~pWI~ngTvreNILFG~~~-------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQK 649 (1381)
T KOG0054|consen 583 ------SVAYVPQQPWIQNGTVRENILFGSPY-------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQK 649 (1381)
T ss_pred ------eEEEeccccHhhCCcHHHhhhcCccc-------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHH
Confidence 69999999999999999999999654 567899999999999999999998876 57889999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHhhCCeEEEEcCCCcEEEecCCCC
Q 001446 322 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDG 398 (1075)
Q Consensus 322 qRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~~~~~~~~ 398 (1075)
|||+||||+|+++||+|||+|+||+|.++.+++++.+.. .++|+|+|||.+++++.+|.|++|++ |.+.+.+..+
T Consensus 650 qRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~--G~I~~~Gty~ 727 (1381)
T KOG0054|consen 650 QRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKD--GKIVESGTYE 727 (1381)
T ss_pred HHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecC--CeEecccCHH
Confidence 999999999999999999999999999999999998754 48999999999999999999999987 3344444433
Q ss_pred cccccccccccccccccccchhhhhHHHhhhhcccccccCCcchhhhHHHHhhcCCC-CCCCC-CCCCcccccCCCCcch
Q 001446 399 SSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPI-ADHNV-PLPVFPQLKSAPRILP 476 (1075)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~ 476 (1075)
++.......... ..+.+.........+ .......................+. .+... .........++.+.+.
T Consensus 728 el~~~~~~~~~l-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~ 802 (1381)
T KOG0054|consen 728 ELLKSGGDFAEL-AHEEESEQEEEASEK----DLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVS 802 (1381)
T ss_pred HHHhcchhHHHH-hhccchhhccccccc----cccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEee
Confidence 332100000000 000000000000000 0000000000000000000000000 00000 0000000001122222
Q ss_pred hhHHhHHHhhhcccchhh------hHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q 001446 477 LRVADMFKVLVPTVFDKQ------GAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSF 550 (1075)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (1075)
+ ..|+.|+....... ...+...++.+..++|++.|.......... ..+. ..++++|.+.+++..+
T Consensus 803 ~---~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~---~~~~---~~~~~vY~~l~~~~~~ 873 (1381)
T KOG0054|consen 803 W---SVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT---TVST---SFYLGVYALLGVASSL 873 (1381)
T ss_pred H---HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc---CCCc---chHHHHHHHHHHHHHH
Confidence 2 33444443311100 111122233446778998887653211100 0011 1234444444444444
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhccCC-ceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHHHHHHH
Q 001446 551 IAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWF 629 (1075)
Q Consensus 551 ~~~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~-~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~~~~~~ 629 (1075)
+...-.........+....||++++++.++++ .||+. ...|.+.|||++|++.+|..++..+..++.+++.++..
T Consensus 874 ~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt----TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~ 949 (1381)
T KOG0054|consen 874 LTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT----TPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGI 949 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC----CCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333333444456667899999999999875 67773 34578999999999999999999998888887776555
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccH-HHHhhchhhh-----hHHHHHHHhhHHhhhcCCcHHHHHH
Q 001446 630 TWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTS-REQQLEGTFR-----FMHERLRAHAESVAFFGGGAREKAM 703 (1075)
Q Consensus 630 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r-----~~~~~~~~~~~~i~~~~~~~~e~~~ 703 (1075)
...++.+.++. .++.+++.+..++++. ++..++ +.+++++..| ++.|.+ .+..+|++|+.+++
T Consensus 950 ~~vi~~~~P~f--li~~~pl~v~~~~~~~----~Y~~tsReLkRLesitRSPi~sh~~Etl-~GlsTIRAf~~~~r---- 1018 (1381)
T KOG0054|consen 950 LVVISYVTPWF--LIAIIPLGVIYYFVQR----YYLATSRELKRLESITRSPIYSHFSETL-QGLSTIRAFGKEER---- 1018 (1381)
T ss_pred HHHhhHHhHHH--HHHHHHHHHHHHHHHH----HHHHHhHHHHHhhhcccchHHHhHHHHh-cCcceeeeccccHH----
Confidence 44444333221 1111111122222222 233333 4467776655 222332 23567899987554
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHH
Q 001446 704 IESRFRELLEHSL-----LLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQ 778 (1075)
Q Consensus 704 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~ 778 (1075)
|.+.+....+... .....+|+. +..+++...+ .+..++...+. .... ...|..+.++.|. .+
T Consensus 1019 f~~~~~~~~D~~~~~~f~~~~a~RWla-~Rle~ig~~~----v~~~al~~vl~-~~~~---~~~g~vGLslsya----l~ 1085 (1381)
T KOG0054|consen 1019 FIQENDELIDENSRAFFLSISANRWLA-VRLELLGNLV----VLIAALFAVLL-PSGL---ISPGLVGLSLSYA----LQ 1085 (1381)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHH----HHHHHHHHHHc-cCCC---CCcchHHHHHHHH----HH
Confidence 4555555555432 334566654 4334433221 11112221111 1110 1245555555543 33
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeC-CCccccccccc
Q 001446 779 SFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIIT-PSQKLLARQLT 857 (1075)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~y-p~~~~vL~~vs 857 (1075)
+...+++.+....+++....|+|||.+|.+.+++ ++ .......||++||. +|+|+|+|++++| |+.++||||||
T Consensus 1086 lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E-~p-~~~~~~~pp~~WP~---~G~I~f~~~~~RYrp~lp~VLk~is 1160 (1381)
T KOG0054|consen 1086 LTGLLQWLVRQSSELENNMVSVERVLEYTDIPSE-AP-LEIEESRPPPSWPS---KGEIEFEDLSLRYRPNLPLVLKGIS 1160 (1381)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCC-CC-CCCcCCCCCCCCCC---CCeEEEEEeEEEeCCCCcchhcCce
Confidence 4445666677777777778999999999987766 22 11122237889998 8999999999966 66799999999
Q ss_pred eeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCCCCh
Q 001446 858 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSR 935 (1075)
Q Consensus 858 ~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~ 935 (1075)
|+|+||||||||||||||||||+++|+|+.||.+|+|.|||+||+++ ..+|+++++|||||+||+||+|.||| |+..
T Consensus 1161 ~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLD-Pf~e 1239 (1381)
T KOG0054|consen 1161 FTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLD-PFDE 1239 (1381)
T ss_pred EEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccC-cccc
Confidence 99999999999999999999999999999999999999999999998 67899999999999999999999998 7642
Q ss_pred HHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEe
Q 001446 936 EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFG 1014 (1075)
Q Consensus 936 ~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~IL 1014 (1075)
.+|++||++|+.++|++.++++|+|||+.+ ++|+|||.||||++|+||||||++|||
T Consensus 1240 ----------------------~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skIL 1297 (1381)
T KOG0054|consen 1240 ----------------------YSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKIL 1297 (1381)
T ss_pred ----------------------cCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEE
Confidence 568899999999999999999999999986 789999999999999999999999999
Q ss_pred EeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1015 ILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1015 iLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
+||||||++|.+|+..||+++++ ++||||+||||++|+-..|++++|++|.
T Consensus 1298 vLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~ 1350 (1381)
T KOG0054|consen 1298 VLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGR 1350 (1381)
T ss_pred EEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCe
Confidence 99999999999999999999975 7999999999999999999999998875
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-112 Score=1114.93 Aligned_cols=951 Identities=17% Similarity=0.190 Sum_probs=579.7
Q ss_pred chhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 8 AFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVA 87 (1075)
Q Consensus 8 ~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1075)
.+.++..+..+..+++-..+..+..++++||+|++|+.+.+++.+..+...+..++ ......+..++.......++
T Consensus 463 ~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~----~~~~~~~~~~~~~~~~~~v~ 538 (1622)
T PLN03130 463 KMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRK----AQLLSAFNSFILNSIPVLVT 538 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 34444444555556666677888899999999999999888777665544333222 11122222211111111111
Q ss_pred HHHHHhh--hhccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCC
Q 001446 88 VILIIEP--FFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDK 165 (1075)
Q Consensus 88 ~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~ 165 (1075)
++.+.. ++++.+ +.|. +++.+ ..+..+...+..+...+..+.+....++|+.++++.++.......
T Consensus 539 -~~~fg~~~~~~g~L-----t~g~--vf~~l----~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~ 606 (1622)
T PLN03130 539 -VVSFGVFTLLGGDL-----TPAR--AFTSL----SLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNP 606 (1622)
T ss_pred -HHHHHHHHHhCCCC-----CHHH--HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCC
Confidence 111111 122222 3332 23222 222233344555666677888889999999998754332111000
Q ss_pred CCCCCCCCCCCCCCccEEEEeEEEEcCC--CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCc-cEEEeC
Q 001446 166 SPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS-GHIAKP 242 (1075)
Q Consensus 166 ~~~~~~~~~~~~~~~~i~~~~v~~~~~~--~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~-G~i~~~ 242 (1075)
. .....+.++++|++|.|++ ++++|+|+||+|++|++++|+||+|||||||+++|+|+++|++ |+|.+.
T Consensus 607 ------~--~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~ 678 (1622)
T PLN03130 607 ------P--LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR 678 (1622)
T ss_pred ------c--ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc
Confidence 0 0011246999999999974 3679999999999999999999999999999999999999999 999875
Q ss_pred CcCccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChh
Q 001446 243 GVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLG 319 (1075)
Q Consensus 243 ~~~~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgG 319 (1075)
+ +|+||+|+||+|++||||||.|+.+ .+++++.++++.|+|+++++.+|.|+++ +.|.+||||
T Consensus 679 ~-------~Iayv~Q~p~LfngTIreNI~fg~~-------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGG 744 (1622)
T PLN03130 679 G-------TVAYVPQVSWIFNATVRDNILFGSP-------FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGG 744 (1622)
T ss_pred C-------eEEEEcCccccCCCCHHHHHhCCCc-------ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHH
Confidence 4 7999999999999999999999854 2467899999999999999999988765 567899999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH-Hh--cCCeEEEEecChhhHhhCCeEEEEcCCCcEEEecCC
Q 001446 320 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-RA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKR 396 (1075)
Q Consensus 320 qkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l-~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~~~~~~ 396 (1075)
|||||+||||+|++|+|+||||||||||+++++++++.+ +. .++|+|+|||+++.+..+|+|++|++ | ...+.+.
T Consensus 745 QKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~-G-~i~e~Gt 822 (1622)
T PLN03130 745 QKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHE-G-MIKEEGT 822 (1622)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeC-C-EEEEeCC
Confidence 999999999999999999999999999999999987654 32 48999999999999999999999985 3 3444444
Q ss_pred CCccccccccccc-ccccc-cccchhhhhHHHhhhhcccccccCCcchhhhHHHHhhcCCCCCCCCCCCCcccccCCCCc
Q 001446 397 DGSSVVTKSGINM-IKSSE-TDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVFPQLKSAPRI 474 (1075)
Q Consensus 397 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1075)
+++.+........ ..... .+........... ................... ................+..+..+.
T Consensus 823 ~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~e~~~~g~ 898 (1622)
T PLN03130 823 YEELSNNGPLFQKLMENAGKMEEYVEENGEEED--DQTSSKPVANGNANNLKKD--SSSKKKSKEGKSVLIKQEERETGV 898 (1622)
T ss_pred HHHHHhcchhHHHHHHhcccccccccccccccc--ccccccccccccccccccc--ccccccccccchhhhhHHHHhcCc
Confidence 3333211100000 00000 0000000000000 0000000000000000000 000000000000000000011111
Q ss_pred chhhHHhHHHhhhcccch--hhhH----HHHHHHHHHHHHHHHHHHhhhhcchHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 001446 475 LPLRVADMFKVLVPTVFD--KQGA----QLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAAS 548 (1075)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (1075)
+.+ ..|+.|+..... .... .++..++..+..+|++.|....... .+...+ +++++++.+++.
T Consensus 899 v~~---~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~-------~~~~~~--~~~i~~~l~~~~ 966 (1622)
T PLN03130 899 VSW---KVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPK-------THGPLF--YNLIYALLSFGQ 966 (1622)
T ss_pred cCH---HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-------CCchhH--HHHHHHHHHHHH
Confidence 122 223333222110 0000 0111122234556777776432110 000111 222222222222
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCC-ceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHHHHH
Q 001446 549 SFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDIL 627 (1075)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~-~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~~~~ 627 (1075)
.+..++..++......+....++.+++++.++.+ .||+ ....+++.+|+++|++.++..++..+..++..++.++
T Consensus 967 ~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd----~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i 1042 (1622)
T PLN03130 967 VLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFH----TNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLL 1042 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhc----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222223333344445556666666666543 6776 3456789999999999999988776666555544433
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhc----hhhhhHHHHHHHhhHHhhhcCCcHHHHHH
Q 001446 628 WFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLE----GTFRFMHERLRAHAESVAFFGGGAREKAM 703 (1075)
Q Consensus 628 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~i~~~~~~~~e~~~ 703 (1075)
.....++.+... ..++++++++...++..+. .....+.++.+ +.......+...+..+|++|+.++ .
T Consensus 1043 ~~~i~i~~~~~~--~~~~~~pl~~~~~~~~~~~---~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~----~ 1113 (1622)
T PLN03130 1043 STFVLIGIVSTI--SLWAIMPLLVLFYGAYLYY---QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD----R 1113 (1622)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHH----H
Confidence 222222211110 0111111111111111110 01111112221 111122233445678899998644 3
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccch-hhhhhhHHHHHHHHHHHHHH
Q 001446 704 IESRFRELLEHSLLL-----LKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRA-LVSTQGELAHALRFLASVVS 777 (1075)
Q Consensus 704 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~l~~~~~~~~ 777 (1075)
+.+.+.+..+..++. ...+|+.... .++.. .+.+..+. +++...+... .....+.++..+. ++.
T Consensus 1114 f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l-~~~~~----~~i~~~~~-~~v~~~~~~~~~~~~~~~~G~~ls----~~~ 1183 (1622)
T PLN03130 1114 MAEINGRSMDNNIRFTLVNMSSNRWLAIRL-ETLGG----LMIWLTAS-FAVMQNGRAENQAAFASTMGLLLS----YAL 1183 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHH-HHHHcccccccchhhhHHHHHHHH----HHH
Confidence 444555555443321 2333432222 12111 11111111 1111100000 0000122222222 223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCC-cccccccc
Q 001446 778 QSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQL 856 (1075)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL~~v 856 (1075)
.....+..+......++....+++|+.++.+.+++.+... ....+++.||. +|.|+|+||+|+|++ .++||+|+
T Consensus 1184 ~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~--~~~~~~~~wp~---~g~I~f~nVsf~Y~~~~~~VL~~i 1258 (1622)
T PLN03130 1184 NITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVI--ENNRPPPGWPS---SGSIKFEDVVLRYRPELPPVLHGL 1258 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccc--cCCCCCCCCCC---CCcEEEEEEEEEeCCCCCceecce
Confidence 3344555666666667778899999999986554332111 11223456886 689999999998864 56899999
Q ss_pred ceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCCCC
Q 001446 857 TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLS 934 (1075)
Q Consensus 857 s~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~ 934 (1075)
||+|+||||||||||||||||||+++|+|||+|++|+|.|||+||+++ +.+|++|++|||||+||+||||+||++...
T Consensus 1259 s~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~ 1338 (1622)
T PLN03130 1259 SFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNE 1338 (1622)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCC
Confidence 999999999999999999999999999999999999999999999988 568899999999999999999999995321
Q ss_pred hHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCE
Q 001446 935 REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKF 1013 (1075)
Q Consensus 935 ~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~I 1013 (1075)
.+|++++++++.++++++++++|+||||.+ +.|.+|||||||||||||||||+|+|
T Consensus 1339 -----------------------~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~I 1395 (1622)
T PLN03130 1339 -----------------------HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKI 1395 (1622)
T ss_pred -----------------------CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 246778888899999999999999999987 57899999999999999999999999
Q ss_pred eEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1014 GILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1014 LiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
||||||||+||.++|+.|++.+++ ++||+|+||||++++..+|++++|++|.
T Consensus 1396 LILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~ 1449 (1622)
T PLN03130 1396 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGR 1449 (1622)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCE
Confidence 999999999999999999998865 5999999999999999999999998775
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-111 Score=1107.74 Aligned_cols=950 Identities=17% Similarity=0.189 Sum_probs=579.5
Q ss_pred chhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 8 AFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVA 87 (1075)
Q Consensus 8 ~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1075)
...+...+..+..+++-..+..+.++++.||+|++|+.+.+++.+..++..+..++.. .......++......++
T Consensus 463 ~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~----~~~~~~~~~~~~~~~~~- 537 (1495)
T PLN03232 463 KMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQ----LLSAFNSFILNSIPVVV- 537 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-
Confidence 3344444445555566567778888999999999999998877776655444433221 11111111111111111
Q ss_pred HHHHHhhhhcccccc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCC
Q 001446 88 VILIIEPFFAGNLKP-DTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKS 166 (1075)
Q Consensus 88 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~ 166 (1075)
.++ +|++.+.. +..+.|. +++.+ ..+..+...+..+......+.+...+++|+.++++.+++......
T Consensus 538 ~~~----~fg~~~v~~~~lt~g~--vf~~l----~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~- 606 (1495)
T PLN03232 538 TLV----SFGVFVLLGGDLTPAR--AFTSL----SLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNP- 606 (1495)
T ss_pred HHH----HHHHHHHhCCCCCHHH--HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccC-
Confidence 111 11111111 1123332 23221 223333344556666777888899999999998865432211000
Q ss_pred CCCCCCCCCCCCCccEEEEeEEEEcCC--CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCc
Q 001446 167 PQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV 244 (1075)
Q Consensus 167 ~~~~~~~~~~~~~~~i~~~~v~~~~~~--~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~ 244 (1075)
. .....+.++++|++|.|++ ++++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|.+..
T Consensus 607 -----~--~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~--- 676 (1495)
T PLN03232 607 -----P--LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV--- 676 (1495)
T ss_pred -----C--cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE---
Confidence 0 0011246999999999974 367999999999999999999999999999999999999999987642
Q ss_pred CccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChhHH
Q 001446 245 GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQ 321 (1075)
Q Consensus 245 ~~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqk 321 (1075)
++++|+||+|+||+|++||||||.|+.+ .+++++.++++.|++.++++.+|.++++ +.|.+||||||
T Consensus 677 ---~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-------~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 746 (1495)
T PLN03232 677 ---IRGSVAYVPQVSWIFNATVRENILFGSD-------FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQK 746 (1495)
T ss_pred ---ecCcEEEEcCccccccccHHHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHH
Confidence 3568999999999999999999999853 3567899999999999999999988765 56789999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH-Hh--cCCeEEEEecChhhHhhCCeEEEEcCCCcEEEecCCCC
Q 001446 322 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-RA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDG 398 (1075)
Q Consensus 322 qRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l-~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~~~~~~~~ 398 (1075)
|||+||||+|++|+|+||||||||||+++++++++.+ .. .++|+|+|||+++.++.+|+|++|+++ ...+.+.+.
T Consensus 747 QRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G--~i~~~Gt~~ 824 (1495)
T PLN03232 747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEG--MIKEEGTFA 824 (1495)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCC--EEEEecCHH
Confidence 9999999999999999999999999999999998764 32 589999999999999999999999863 344444433
Q ss_pred ccccccccccc-ccccc-cccchhhhhHHHhhhhcccccccCCcchhhhHHHHhhcCCCCCCCCCCCCcccccCCCCcch
Q 001446 399 SSVVTKSGINM-IKSSE-TDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVFPQLKSAPRILP 476 (1075)
Q Consensus 399 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1075)
+.+........ ..... .+.........+.. ............. ... ...............+..++.+...
T Consensus 825 eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~e~~~~g~v~ 897 (1495)
T PLN03232 825 ELSKSGSLFKKLMENAGKMDATQEVNTNDENI---LKLGPTVTIDVSE--RNL--GSTKQGKRGRSVLVKQEERETGIIS 897 (1495)
T ss_pred HHHhcchhHHHHHHhccccccccccccccccc---ccccccccccccc--ccc--ccccccccchhhhhhHHHHhcCccc
Confidence 33211100000 00000 00000000000000 0000000000000 000 0000000000000000000111111
Q ss_pred hhHHhHHHhhhcccch--hhhHH----HHHHHHHHHHHHHHHHHhhhhcchHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q 001446 477 LRVADMFKVLVPTVFD--KQGAQ----LLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSF 550 (1075)
Q Consensus 477 ~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (1075)
+ ..|+.|+..... ..... +...++..+..+|++.|....... ..... .+++++++.+++..+
T Consensus 898 ~---~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~------~~~~~---~~l~~y~~l~~~~~~ 965 (1495)
T PLN03232 898 W---NVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPK------SYSPG---FYIVVYALLGFGQVA 965 (1495)
T ss_pred H---HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC------CCCcc---hHHHHHHHHHHHHHH
Confidence 1 223333222110 00000 111122234567777776432100 00011 122333333332222
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhccCC-ceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHHHHHHH
Q 001446 551 IAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWF 629 (1075)
Q Consensus 551 ~~~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~-~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~~~~~~ 629 (1075)
..+...++......+....++++++++.++.+ .||+ ....+++.+|+++|++.++..++..+..++..++.++..
T Consensus 966 ~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~----~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~ 1041 (1495)
T PLN03232 966 VTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFH----TNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLST 1041 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeC----cCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233333444445555666666666544 6776 345578999999999999999888666655544333222
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhc----hhhhhHHHHHHHhhHHhhhcCCcHHHHHHHH
Q 001446 630 TWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLE----GTFRFMHERLRAHAESVAFFGGGAREKAMIE 705 (1075)
Q Consensus 630 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~ 705 (1075)
...+..+... .+++++++++...+.+.+.. ....+.++.+ +.+-....+...+.++|++|+.+++ +.
T Consensus 1042 ~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~----~~ 1112 (1495)
T PLN03232 1042 FALIGTVSTI--SLWAIMPLLILFYAAYLYYQ---STSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDR----MA 1112 (1495)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHH----HH
Confidence 1111111100 01111111111111111100 0111111111 1111222333456789999997543 33
Q ss_pred HHHHHHHHHHHHH-----HHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccch-hhhhhhHHHHHHHHHHHHHHHH
Q 001446 706 SRFRELLEHSLLL-----LKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRA-LVSTQGELAHALRFLASVVSQS 779 (1075)
Q Consensus 706 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~l~~~~~~~~~~ 779 (1075)
+.+.+..+..++. ...+|+...+ .++.. .+.+..+. +.+...+... .....+.++ .+..+...+
T Consensus 1113 ~~~~~~~~~~~~~~~~~~~~~~wl~~~~-~~~~~----~~~~~~~~-~~v~~~~~~~~~~~~~~~~g----~~~~~~~~~ 1182 (1495)
T PLN03232 1113 KINGKSMDNNIRFTLANTSSNRWLTIRL-ETLGG----VMIWLTAT-FAVLRNGNAENQAGFASTMG----LLLSYTLNI 1182 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHH-HHHHccccccccccchHHHH----HHHHHHHHH
Confidence 4444444433322 1233432222 11110 11111111 1111011100 000011111 122223334
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCC-ccccccccce
Q 001446 780 FLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTF 858 (1075)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL~~vs~ 858 (1075)
..++..+...+.++.....+++||.++.+.+++.+... ....+++.||. +|.|+|+||+|+|++ .++||+|+||
T Consensus 1183 ~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~--~~~~~~~~~p~---~g~I~f~nVsf~Y~~~~~~vL~~isl 1257 (1495)
T PLN03232 1183 TTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAII--ENNRPVSGWPS---RGSIKFEDVHLRYRPGLPPVLHGLSF 1257 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc--cCCCCCCCCCC---CCcEEEEEEEEEECCCCCcccccceE
Confidence 44566677777777888899999999987654332110 11123446876 689999999998854 5789999999
Q ss_pred eecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCCCChH
Q 001446 859 EIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSRE 936 (1075)
Q Consensus 859 ~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~ 936 (1075)
+|+||||||||||||||||||+++|+|+|+|++|+|.|||+||+++ +.+|++|++|||||+||+||||+||++...
T Consensus 1258 ~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~-- 1335 (1495)
T PLN03232 1258 FVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSE-- 1335 (1495)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCC--
Confidence 9999999999999999999999999999999999999999999988 467899999999999999999999995321
Q ss_pred HHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeE
Q 001446 937 EAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGI 1015 (1075)
Q Consensus 937 ~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILi 1015 (1075)
.+|++++++++.++++++++++|+||||.+ +.|.+|||||||||||||||||+|+|||
T Consensus 1336 ---------------------~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILI 1394 (1495)
T PLN03232 1336 ---------------------HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILV 1394 (1495)
T ss_pred ---------------------CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 246778888899999999999999999986 6789999999999999999999999999
Q ss_pred eeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1016 LDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1016 LDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
||||||+||.++|+.|++.+++ ++||+|+||||++++...|++++|++|.
T Consensus 1395 LDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ 1446 (1495)
T PLN03232 1395 LDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQ 1446 (1495)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCE
Confidence 9999999999999999998865 5999999999999999999999998775
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-108 Score=1080.33 Aligned_cols=960 Identities=16% Similarity=0.165 Sum_probs=585.2
Q ss_pred chhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 8 AFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVA 87 (1075)
Q Consensus 8 ~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1075)
.+.++..+..+..+++-..+..+.++++.||+|++|+...+++.+..+...+..++ ..+...+..+.. +....+.
T Consensus 480 ~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~----~~~~~~~~~~~~-~~~~~~~ 554 (1522)
T TIGR00957 480 KTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKK----SAYLHAVGTFTW-VCTPFLV 554 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-HHHHHHH
Confidence 34444444455555666677888889999999999999988777766554433221 122222211111 1111111
Q ss_pred HHHHHhhhhccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCC
Q 001446 88 VILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSP 167 (1075)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~ 167 (1075)
.++.+..|.. ..+...++...++..+ ..+..+...+..+......+.+...+.+|+.++++.+++... . .
T Consensus 555 ~~~~f~~~~~---~~~~~~l~~~~~f~~l----~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~-~--~ 624 (1522)
T TIGR00957 555 ALITFAVYVT---VDENNILDAEKAFVSL----ALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPD-S--I 624 (1522)
T ss_pred HHHHHHHHHH---hcCCCCcCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-c--c
Confidence 1111111110 0001112222233322 112223345566777778888899999999998764432110 0 0
Q ss_pred CCCCCCCCCCCCccEEEEeEEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc
Q 001446 168 QRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS 246 (1075)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~ 246 (1075)
.. ..........++++|+++.|++ .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 625 ~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--- 699 (1522)
T TIGR00957 625 ER--RTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--- 699 (1522)
T ss_pred cc--cccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC---
Confidence 00 0000011236999999999975 35799999999999999999999999999999999999999999999987
Q ss_pred cccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChhHHHH
Q 001446 247 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQR 323 (1075)
Q Consensus 247 ~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqR 323 (1075)
+|+||||+||++++|++|||.++... +++++.++++.|++.++++.+|.++++ +.|.+||||||||
T Consensus 700 ----~i~yv~Q~~~l~~~Ti~eNI~~g~~~-------~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqR 768 (1522)
T TIGR00957 700 ----SVAYVPQQAWIQNDSLRENILFGKAL-------NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQR 768 (1522)
T ss_pred ----EEEEEcCCccccCCcHHHHhhcCCcc-------CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHH
Confidence 69999999999999999999997532 345678899999999999988877644 5678999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh-----cCCeEEEEecChhhHhhCCeEEEEcCCCcEEEecCCCC
Q 001446 324 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA-----MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDG 398 (1075)
Q Consensus 324 l~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~-----~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~~~~~~~~ 398 (1075)
++||||++++|+++|||||||+||+++++++++.+.+ .++|+|+|||+++.+..||+|++|++ | ...+.+...
T Consensus 769 iaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~-G-~i~~~g~~~ 846 (1522)
T TIGR00957 769 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSG-G-KISEMGSYQ 846 (1522)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecC-C-eEEeeCCHH
Confidence 9999999999999999999999999999999988742 37899999999999999999999985 3 233333222
Q ss_pred ccccccccccc----ccccccccc-hhh-------hhHHHhhhhc----c--cccccCC----cchhhhHHHHhh-cCCC
Q 001446 399 SSVVTKSGINM----IKSSETDRQ-SDA-------MAVEQAFVTA----K--KDSAFSN----PKAQSYVSEVIA-ASPI 455 (1075)
Q Consensus 399 ~~~~~~~~~~~----~~~~~~~~~-~~~-------~~~~~~~~~~----~--~~~~~~~----~~~~~~~~~~~~-~~~~ 455 (1075)
+.......... ....+.... .+. .......... . ....... ............ ....
T Consensus 847 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1522)
T TIGR00957 847 ELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAE 926 (1522)
T ss_pred HHHhcchhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence 21110000000 000000000 000 0000000000 0 0000000 000000000000 0000
Q ss_pred CCCCCCCCCcccc----cCCCCcchhhHHhHHHhhhcccchhhhH-----HHHHHHHHHHHHHHHHHHhhhhcchHHHHH
Q 001446 456 ADHNVPLPVFPQL----KSAPRILPLRVADMFKVLVPTVFDKQGA-----QLLAVAFLVVSRTWISDRIASLNGTTVKYV 526 (1075)
Q Consensus 456 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 526 (1075)
............. .+..+.+. ...|+.|+......... .+...++..+..+|++.|.......
T Consensus 927 ~~~~~~~~~~~~~~~~e~~~~g~v~---~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~----- 998 (1522)
T TIGR00957 927 LQKAEAKEETWKLMEADKAQTGQVE---LSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVN----- 998 (1522)
T ss_pred ccccccccchhhhHHHHHHhcCccc---HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----
Confidence 0000000000000 00111111 22334343332111000 0111122335567887776431100
Q ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCC-ceEEEecCCCCCCCCcchhHHHH
Q 001446 527 LEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDL 605 (1075)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~-~~~~~~~~~~~~~~~~~r~s~D~ 605 (1075)
.+......+++++++.+++..+..+...++......+...++|+++++..++.+ .||+ ....+++.+||++|+
T Consensus 999 --~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~----~~~~G~ilnR~s~Di 1072 (1522)
T TIGR00957 999 --GTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFE----RTPSGNLVNRFSKEL 1072 (1522)
T ss_pred --CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhc----cCChHHHHHHHHHHH
Confidence 000000012223322222222222222233333444455566666666666544 6776 345578999999999
Q ss_pred HHHHHHHHHHhhhhhHhHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhc----hhhhhHH
Q 001446 606 EKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLE----GTFRFMH 681 (1075)
Q Consensus 606 ~~~~~~l~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~r~~~ 681 (1075)
+.++..++..+..++..++.++.....+...... ++++++++++...++.... .....+.++.+ +.+....
T Consensus 1073 ~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~s~l~~~~ 1147 (1522)
T TIGR00957 1073 DTVDSMIPPVIKMFMGSLFNVIGALIVILLATPI--AAVIIPPLGLLYFFVQRFY---VASSRQLKRLESVSRSPVYSHF 1147 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHH
Confidence 9999998877666655544332221111111110 1111111111111111110 01111112222 1111222
Q ss_pred HHHHHhhHHhhhcCCcHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccc
Q 001446 682 ERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLL-----LLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDR 756 (1075)
Q Consensus 682 ~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (1075)
.+...+.++|++|++++. +.+.+.+..+..++ ....+|+...+ .++...+ +.+... +.....+.
T Consensus 1148 ~E~l~Gi~tIraf~~~~~----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~--~~v~~~~~- 1216 (1522)
T TIGR00957 1148 NETLLGVSVIRAFEEQER----FIHQSDLKVDENQKAYYPSIVANRWLAVRL-ECVGNCI---VLFAAL--FAVISRHS- 1216 (1522)
T ss_pred HHHhCCcHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHH--HHHHhcCC-
Confidence 333456788999997654 33444455443332 23444543322 2221110 000111 11110110
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCc
Q 001446 757 ALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDS 836 (1075)
Q Consensus 757 ~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~ 836 (1075)
.+.|.++.++.+ ...+..++..+...+.++.....|++|+.++.+.+++.+.. .....+++.||. +|.
T Consensus 1217 ---~~~g~l~~~l~~----~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~--~~~~~~~~~wp~---~g~ 1284 (1522)
T TIGR00957 1217 ---LSAGLVGLSVSY----SLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQ--IQETAPPSGWPP---RGR 1284 (1522)
T ss_pred ---CCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc--ccCCCCCCCCCC---CCc
Confidence 123444433333 33445577778888888888999999999998654432210 011223456886 689
Q ss_pred eEEeeeeeeCCCc-cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEE
Q 001446 837 ISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFY 913 (1075)
Q Consensus 837 I~f~~V~~~yp~~-~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~ 913 (1075)
|+|+||+|+|+++ ++||+|+||+|+||||||||||||||||||+++|+|||||++|+|.|||+||+++ +.+|++|++
T Consensus 1285 I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~i 1364 (1522)
T TIGR00957 1285 VEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITI 1364 (1522)
T ss_pred EEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeE
Confidence 9999999999764 6899999999999999999999999999999999999999999999999999998 468999999
Q ss_pred EcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccC
Q 001446 914 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDI 992 (1075)
Q Consensus 914 VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~ 992 (1075)
|||||+||+||||+||+ |.+. .+|++++++++.++++++++++|+||||.+ +.|.+
T Consensus 1365 VpQdp~LF~gTIr~NLd-p~~~----------------------~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~ 1421 (1522)
T TIGR00957 1365 IPQDPVLFSGSLRMNLD-PFSQ----------------------YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGEN 1421 (1522)
T ss_pred ECCCCcccCccHHHHcC-cccC----------------------CCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCc
Confidence 99999999999999998 4321 346778888899999999999999999987 57899
Q ss_pred CChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
|||||||||||||||||+|||||||||||+||.++|+.|++.+++ ++||+|+||||++++...|++++|++|.
T Consensus 1422 LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~ 1496 (1522)
T TIGR00957 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGE 1496 (1522)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999998865 6999999999999999999999998775
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-107 Score=1055.63 Aligned_cols=982 Identities=15% Similarity=0.178 Sum_probs=583.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 12 LMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILI 91 (1075)
Q Consensus 12 ~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (1075)
.....++..+++-..+.....++++|+.|++|+.+.+++.+......+.. .+.....++....... +.....+
T Consensus 224 ~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~---~k~~~~~~~~~~~~~~----~~~~~~~ 296 (1466)
T PTZ00265 224 NKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYI---LKANFMESLHIGMING----FILASYA 296 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH----HHHHHHH
Confidence 33344455567777888888899999999999999987765544333322 2222222222211111 1111122
Q ss_pred HhhhhccccccCc---------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 001446 92 IEPFFAGNLKPDT---------STLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSI 162 (1075)
Q Consensus 92 ~~~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~ 162 (1075)
+..|+++.+.... .+.|. +++.+ ...+. .+..+..+...+..+.....+++|+.++++.+++...
T Consensus 297 l~~~~G~~lv~~g~~~~~~~~~~t~g~--v~~~~---~~~l~-~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~ 370 (1466)
T PTZ00265 297 FGFWYGTRIIISDLSNQQPNNDFHGGS--VISIL---LGVLI-SMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVEN 370 (1466)
T ss_pred HHHHHHHHHHHcCCcccccccccchhH--HHHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 2335555443321 12222 22211 11121 1223445566677888889999999998876544321
Q ss_pred cCCCCCCCCCCCCCCCCccEEEEeEEEEcCCC--CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEE
Q 001446 163 EDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240 (1075)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~--~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~ 240 (1075)
... ....+....|+++||+|.|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 371 ~~~-------~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 443 (1466)
T PTZ00265 371 NDD-------GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII 443 (1466)
T ss_pred CCC-------CccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEE
Confidence 100 0011112369999999999853 4799999999999999999999999999999999999999999999
Q ss_pred eC-CcC------ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCc-----------------------------------
Q 001446 241 KP-GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQ----------------------------------- 278 (1075)
Q Consensus 241 ~~-~~~------~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~----------------------------------- 278 (1075)
++ |.+ ..++++|+||||+|.+|++|++|||.++.....
T Consensus 444 i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1466)
T PTZ00265 444 INDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLN 523 (1466)
T ss_pred EeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhh
Confidence 94 543 235778999999999999999999998742100
Q ss_pred ----------------ccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChhHHHHHHHHHHHcCCCCEEEE
Q 001446 279 ----------------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAIL 339 (1075)
Q Consensus 279 ----------------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqRl~lAral~~~p~illL 339 (1075)
.....+++++.++++.+++++++.++|.+.++ +.|.+|||||||||+|||||+++|+||||
T Consensus 524 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlL 603 (1466)
T PTZ00265 524 DMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILIL 603 (1466)
T ss_pred hcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 00124567899999999999999999987553 45789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHhhCCeEEEEcCC----------------------------
Q 001446 340 DECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE---------------------------- 387 (1075)
Q Consensus 340 DEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~~~d~i~~l~~~---------------------------- 387 (1075)
|||||+||++++..+.+.+++ .|+|+|+|||+++.++.||+|++|+++
T Consensus 604 DEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1466)
T PTZ00265 604 DEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNK 683 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccccc
Confidence 999999999999999988864 379999999999999999999999763
Q ss_pred -----------------CcEEEecCCCCccccccccc-cc-cccccc--ccch----hhhhHHHhhhhccccccc-CCcc
Q 001446 388 -----------------GEWRVHDKRDGSSVVTKSGI-NM-IKSSET--DRQS----DAMAVEQAFVTAKKDSAF-SNPK 441 (1075)
Q Consensus 388 -----------------g~~~~~~~~~~~~~~~~~~~-~~-~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~-~~~~ 441 (1075)
|+.+++.+.|++++....+. .. ...+.. .... +.....+........... ....
T Consensus 684 ~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (1466)
T PTZ00265 684 DDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEM 763 (1466)
T ss_pred ccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccccccccccccccc
Confidence 22344444444443211100 00 000000 0000 000000000000000000 0000
Q ss_pred hhhh-HHHHh-h---cCCC--C--CCCC---CCCCcccccCCCCcchhhHHhHHHhhhcccchhhhHHHHHHHH---HHH
Q 001446 442 AQSY-VSEVI-A---ASPI--A--DHNV---PLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAF---LVV 506 (1075)
Q Consensus 442 ~~~~-~~~~~-~---~~~~--~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 506 (1075)
.... ..... . .... . .... +.+......+.....+..+..+++.++++......+.+..++. ..+
T Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (1466)
T PTZ00265 764 NGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALSILVAGGLYPV 843 (1466)
T ss_pred cccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000 0 0000 0 0000 0000000000000011111122222222211000111111100 001
Q ss_pred HHHHHHHHhhhhcchHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCceEE
Q 001446 507 SRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYK 586 (1075)
Q Consensus 507 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~ 586 (1075)
..+.++.++...... ...........+.+++++++.+++..+..+....+..++..++|..+++++++. +..||+
T Consensus 844 ~~~~~~~~i~~~~~~--~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~---~~~~fd 918 (1466)
T PTZ00265 844 FALLYAKYVSTLFDF--ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQ---EISFFD 918 (1466)
T ss_pred HHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHhC
Confidence 111112222111000 000000000111122333333444445555666667777777788777777652 335665
Q ss_pred EecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhH-------hHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHh
Q 001446 587 VFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVK-------PSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSV 659 (1075)
Q Consensus 587 ~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (1075)
-. ....+++.+|+++|++.+...+...+..++. .++..++++|+++++. +.+++++...+....
T Consensus 919 ~~--~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~-------~~~~~~~~~~~~~~~ 989 (1466)
T PTZ00265 919 QD--KHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVL-------TGTYFIFMRVFAIRA 989 (1466)
T ss_pred CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 21 1235678899999999988766544433332 2233345566655432 111111111111100
Q ss_pred c----cccccc----cH------HHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001446 660 T----PEFGDL----TS------REQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLF 725 (1075)
Q Consensus 660 ~----~~~~~~----~~------~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1075)
. ...... .. ..++..+.......+...+.++|++|+.+..+.+.+.+..+.......+... +.
T Consensus 990 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~---~~ 1066 (1466)
T PTZ00265 990 RLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTL---VN 1066 (1466)
T ss_pred HHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 0 000000 00 0011111223334455567889999998877666655554444332222111 11
Q ss_pred hhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 001446 726 GILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFE 805 (1075)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~ 805 (1075)
+....+ .++...+..+++++|+........ .+.|.+..++. .+.....+++.+.....++..+..+.+|+++
T Consensus 1067 ~~~~~~--~~~~~~~~~~~~~~~G~~lv~~g~--it~g~l~~~~~----~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ 1138 (1466)
T PTZ00265 1067 SMLWGF--SQSAQLFINSFAYWFGSFLIRRGT--ILVDDFMKSLF----TFLFTGSYAGKLMSLKGDSENAKLSFEKYYP 1138 (1466)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 111112223344445433221111 11222222111 1111223456677788888899999999999
Q ss_pred HHHHHhhcCCCCCcccCCccCcC-CCCCCCCceEEeeeeeeCCCc--cccccccceeecCCCeEEEEcCCCCcHHHHHHH
Q 001446 806 LEELLDAAQPGDDEISGSSQHKW-NSTDYQDSISFSKLDIITPSQ--KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRV 882 (1075)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~w-~~~~~~g~I~f~~V~~~yp~~--~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~l 882 (1075)
+++.+++.+... ... ... +.....|.|+|+||+|+||+. .+||+|+||+|+|||+||||||||||||||+++
T Consensus 1139 ll~~~~~~~~~~---~~~--~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~L 1213 (1466)
T PTZ00265 1139 LIIRKSNIDVRD---NGG--IRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSL 1213 (1466)
T ss_pred HHCCCCcCCCCC---Ccc--cccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 987543221110 000 000 011235789999999999863 489999999999999999999999999999999
Q ss_pred HhCCCCC------------------------------------------------------CCCeEecCCCCCccc--cC
Q 001446 883 LRGLWPV------------------------------------------------------VSGSLTKPSQHIDEE--AG 906 (1075)
Q Consensus 883 L~Rl~~~------------------------------------------------------~sG~I~idg~di~~~--~~ 906 (1075)
|+|||+| ++|+|.+||+||+++ ..
T Consensus 1214 L~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~ 1293 (1466)
T PTZ00265 1214 LMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKD 1293 (1466)
T ss_pred HHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHH
Confidence 9999998 699999999999988 46
Q ss_pred CcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccc
Q 001446 907 SGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 986 (1075)
Q Consensus 907 ~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~ 986 (1075)
+|++|+||||||+||+|||||||.|+.. +.+|++++++++.++++++++++|+||||.
T Consensus 1294 lR~~i~~V~Qep~LF~gTIreNI~~g~~----------------------~at~eeI~~A~k~A~l~~fI~~LP~GydT~ 1351 (1466)
T PTZ00265 1294 LRNLFSIVSQEPMLFNMSIYENIKFGKE----------------------DATREDVKRACKFAAIDEFIESLPNKYDTN 1351 (1466)
T ss_pred HHhhccEeCCCCccccccHHHHHhcCCC----------------------CCCHHHHHHHHHHcCCHHHHHhCccccCCc
Confidence 8899999999999999999999998632 123556667777777888888899999998
Q ss_pred c-ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCchhhccceEEE
Q 001446 987 L-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRL 1061 (1075)
Q Consensus 987 ~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i~~~~~~l~l 1061 (1075)
+ +.|.+|||||||||||||||+|+|+||||||||||||.++|+.|++.+.. .++|+|+||||+++++..|++++|
T Consensus 1352 VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl 1431 (1466)
T PTZ00265 1352 VGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVF 1431 (1466)
T ss_pred cCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEE
Confidence 7 57899999999999999999999999999999999999999999887754 389999999999999999999999
Q ss_pred EcCC
Q 001446 1062 IDGE 1065 (1075)
Q Consensus 1062 ~~g~ 1065 (1075)
++|+
T Consensus 1432 ~~~~ 1435 (1466)
T PTZ00265 1432 NNPD 1435 (1466)
T ss_pred eCCC
Confidence 8754
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-104 Score=1038.77 Aligned_cols=796 Identities=17% Similarity=0.196 Sum_probs=490.1
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCccccccEEEEcCCCCCCcCCHHHHhcCC
Q 001446 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP 273 (1075)
Q Consensus 194 ~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~~~~~tv~~ni~~~ 273 (1075)
++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+. ++|+||||+||++++|++|||.++
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------~~i~yv~Q~~~l~~~Tv~enI~~~ 744 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------RSIAYVPQQAWIMNATVRGNILFF 744 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------CeEEEEeCCCccCCCcHHHHHHcC
Confidence 3568999999999999999999999999999999999999999999875 379999999999999999999986
Q ss_pred CCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Q 001446 274 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 350 (1075)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~ 350 (1075)
.. .+.+++.++++.++++++++.+|.+..+ +.|.+|||||||||+||||++.+|+++|||||||+||+++
T Consensus 745 ~~-------~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~ 817 (1560)
T PTZ00243 745 DE-------EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHV 817 (1560)
T ss_pred Ch-------hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 42 2334677888889999999988766543 4578999999999999999999999999999999999999
Q ss_pred HHHHHHHHH---hcCCeEEEEecChhhHhhCCeEEEEcCCCcEEEecCCCCcccccccccccccccccccch--hhhhHH
Q 001446 351 EERFCAKVR---AMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTKSGINMIKSSETDRQS--DAMAVE 425 (1075)
Q Consensus 351 ~~~i~~~l~---~~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 425 (1075)
.+++++.+. ..|+|+|+|||+++.+..+|+|++|+++ .....+...+.. ................. +.....
T Consensus 818 ~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G--~i~~~G~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ 894 (1560)
T PTZ00243 818 GERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDG--RVEFSGSSADFM-RTSLYATLAAELKENKDSKEGDADA 894 (1560)
T ss_pred HHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECC--EEEEecCHHHHH-hChHHHHHHHhhccccccccccccc
Confidence 988877532 2489999999999999999999999863 233332222111 00000000000000000 000000
Q ss_pred HhhhhcccccccCCcchhhhHHHHhhcCCCCCCCCCCCCccccc----CCCCcchhhHHhHHHhhhcccchhhhHHH--H
Q 001446 426 QAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVFPQLK----SAPRILPLRVADMFKVLVPTVFDKQGAQL--L 499 (1075)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 499 (1075)
+...................... ......+............ +..+.+++ ..|+.|+..+.......+ +
T Consensus 895 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~---~~y~~Y~~~~g~~~~~~~~l~ 969 (1560)
T PTZ00243 895 EVAEVDAAPGGAVDHEPPVAKQE--GNAEGGDGAALDAAAGRLMTREEKASGSVPW---STYVAYLRFCGGLHAAGFVLA 969 (1560)
T ss_pred ccccccccccccccccccccccc--cccccccccccccccchhhhHHHHhcCcccH---HHHHHHHHHhhhHHHHHHHHH
Confidence 00000000000000000000000 0000000000000000000 01111222 223333322111000000 0
Q ss_pred ----HHHHHHHHHHHHHHHhhhhcchHHHHHHhcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001446 500 ----AVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFV-RLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHL 574 (1075)
Q Consensus 500 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l 574 (1075)
..++..+..+|++.|...... .+...++ .|+++.++.. +..++.....+ .........+|+.+
T Consensus 970 ~~~~~~~~~~~~~~wl~~w~~~~~~--------~~~~~~l~~y~~~~~~~~-~~~~l~~~~~~---~~~~~~~~~l~~~l 1037 (1560)
T PTZ00243 970 TFAVTELVTVSSGVWLSMWSTRSFK--------LSAATYLYVYLGIVLLGT-FSVPLRFFLSY---EAMRRGSRNMHRDL 1037 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccC--------CCcccHHHHHHHHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 111223445677766542110 0111111 1111111111 11111111111 11222234566666
Q ss_pred HHHhccCC-ceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 001446 575 LKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGL 653 (1075)
Q Consensus 575 l~~~l~~~-~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 653 (1075)
+++.++.+ .||+ ....+++.+||++|++.++..++..+..++..++.++.....+....+. .+.++++++++..
T Consensus 1038 ~~~ll~~p~~ffd----~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~-~~~~~i~~~~~~~ 1112 (1560)
T PTZ00243 1038 LRSVSRGTMSFFD----TTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPF-VLVALVPCGYLYY 1112 (1560)
T ss_pred HHHHHcCChhhcc----CCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 66666654 6776 3456789999999999999998877666655544433222222211110 0111111111111
Q ss_pred HHHHHhccccccccHHHHhh----chhhhhHHHHHHHhhHHhhhcCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhh
Q 001446 654 GFLRSVTPEFGDLTSREQQL----EGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLL-LLKKKWLFGIL 728 (1075)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~----~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 728 (1075)
.+.+.+ .....+.++. .+.+.....+...+.++|++|+.++...+.+.+..+...+.... ....+|+ .+.
T Consensus 1113 ~i~~~~----~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~-~~~ 1187 (1560)
T PTZ00243 1113 RLMQFY----NSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWL-GVR 1187 (1560)
T ss_pred HHHHHH----HHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 111111 1111122221 11122233444456789999998776655555555554443332 2334443 333
Q ss_pred HHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 001446 729 DDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEE 808 (1075)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~ 808 (1075)
..++...+...+. +...++. ..+... ...|.++. +..+...+..++..+...+..+.....+++||.++.+
T Consensus 1188 ~~~l~~~~~~~~~--~~~~~~~-~~~~~~--~~~g~l~~----~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~ 1258 (1560)
T PTZ00243 1188 VEFLSNIVVTVIA--LIGVIGT-MLRATS--QEIGLVSL----SLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTD 1258 (1560)
T ss_pred HHHHHHHHHHHHH--HHHHHHH-HhccCC--CCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2332211111111 1111110 000000 11222222 2223344556777778888888888999999999986
Q ss_pred HHhhcCCCC-C---------------------cccCCccCcCCCCCCCCceEEeeeeeeCCCc-cccccccceeecCCCe
Q 001446 809 LLDAAQPGD-D---------------------EISGSSQHKWNSTDYQDSISFSKLDIITPSQ-KLLARQLTFEIVPGKS 865 (1075)
Q Consensus 809 ~~~~~~~~~-~---------------------~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~-~~vL~~vs~~I~~Ge~ 865 (1075)
..++++... . .....++..||.....|.|+|+||+|+|+++ ++||+||||+|+||||
T Consensus 1259 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~Gek 1338 (1560)
T PTZ00243 1259 EVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREK 1338 (1560)
T ss_pred cCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCCE
Confidence 432211000 0 0001112234433346899999999999764 6799999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHh
Q 001446 866 LLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRAL 943 (1075)
Q Consensus 866 vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~ 943 (1075)
||||||||||||||+++|+|||+|++|+|.|||+||+++ +.+|++|++|||||+||+||||+||+ |..
T Consensus 1339 VaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNId-p~~--------- 1408 (1560)
T PTZ00243 1339 VGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVD-PFL--------- 1408 (1560)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhC-ccc---------
Confidence 999999999999999999999999999999999999987 46789999999999999999999998 432
Q ss_pred hhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcC-CCEeEeeccCC
Q 001446 944 KLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHK-PKFGILDECTN 1021 (1075)
Q Consensus 944 ~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~-p~ILiLDEATS 1021 (1075)
+.+|++++++++.++++++++++|+||||.+ +.|.+|||||||||||||||||+ |+|||||||||
T Consensus 1409 -------------~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATS 1475 (1560)
T PTZ00243 1409 -------------EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATA 1475 (1560)
T ss_pred -------------CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCc
Confidence 1346778888899999999999999999986 67899999999999999999996 89999999999
Q ss_pred CCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1022 ATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1022 alD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
+||.++|+.|++.+++ .++|+|+||||++++...|++++|++|.
T Consensus 1476 aLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~ 1521 (1560)
T PTZ00243 1476 NIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGA 1521 (1560)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCE
Confidence 9999999999998864 5899999999999999999999998775
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-103 Score=1024.80 Aligned_cols=958 Identities=16% Similarity=0.166 Sum_probs=568.7
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 10 GKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVI 89 (1075)
Q Consensus 10 ~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (1075)
.++..+..+..+++-..+..+.++++.||+|++|+.+.+++.+..+...+..++... .......+. +....+..+
T Consensus 246 ~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~----~~~~~~~~~-~~~~~~~~~ 320 (1490)
T TIGR01271 246 MPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAY----LRYFYSSAF-FFSGFFVVF 320 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-HHHHHHHHH
Confidence 333333444444555577888889999999999999988777766544443332221 111111111 111111111
Q ss_pred HHHhhhhccccccCcchhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCC
Q 001446 90 LIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSL-GTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQ 168 (1075)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 168 (1075)
+.+..|.. .+..+.+ .+|+.+.++ +. +...+ ..+...+..+.+....++|+.+++..++.... ..
T Consensus 321 ~~f~~y~~----~~~~~~~--~~ft~lal~-~l---L~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~-~~--- 386 (1490)
T TIGR01271 321 LSVVPYAL----IKGIILR--RIFTTISYC-IV---LRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTL-EY--- 386 (1490)
T ss_pred HHHHHHHH----hCCCcHH--HHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc-cc---
Confidence 11111110 0111222 223322111 11 11122 23455556677788889999988854332110 00
Q ss_pred CCCCCCCCCCCccEEEEeEEEEcCC---------------------------------CCeeeeeceEEEeCCCEEEEEc
Q 001446 169 RNGSRNYFSEANYIEFSGVKVVTPT---------------------------------GNVLVENLTLKVEPGSNLLITG 215 (1075)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~v~~~~~~---------------------------------~~~~l~~i~l~i~~g~~~~i~G 215 (1075)
......++++|+++.|+. .+++|+|+||+|++|++++|+|
T Consensus 387 -------~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G 459 (1490)
T TIGR01271 387 -------NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAG 459 (1490)
T ss_pred -------cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEEC
Confidence 001123666666665531 1468999999999999999999
Q ss_pred CCcchHHHHHHHHhCCCCCCccEEEeCCcCccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHc
Q 001446 216 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 295 (1075)
Q Consensus 216 ~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (1075)
|||||||||+++|+|+++|++|+|.++| +|+||||+||++++|++|||.|+... +.+++.++++.|
T Consensus 460 ~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------~iayv~Q~~~l~~~Ti~eNI~~g~~~-------~~~~~~~~~~~~ 525 (1490)
T TIGR01271 460 STGSGKSSLLMMIMGELEPSEGKIKHSG-------RISFSPQTSWIMPGTIKDNIIFGLSY-------DEYRYTSVIKAC 525 (1490)
T ss_pred CCCCCHHHHHHHHhCCCCCCCceEEECC-------EEEEEeCCCccCCccHHHHHHhcccc-------chHHHHHHHHHH
Confidence 9999999999999999999999999987 69999999999999999999998532 234577888999
Q ss_pred CChhHHhcCCCCccc---CCCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH-Hh--cCCeEEEEe
Q 001446 296 DLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-RA--MGTSCITIS 369 (1075)
Q Consensus 296 ~l~~~~~~~~~~~~~---~~g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l-~~--~~~t~i~vt 369 (1075)
+|.++++.+|.++.+ +.|.+|||||||||+||||++++|+++||||||||||+++++++++.+ .+ .++|+|+||
T Consensus 526 ~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvt 605 (1490)
T TIGR01271 526 QLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVT 605 (1490)
T ss_pred hHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 999999998877654 457899999999999999999999999999999999999999999753 32 489999999
Q ss_pred cChhhHhhCCeEEEEcCCCcEEEecCCCCccccccc-------------c---cc-------------cc-cc-----cc
Q 001446 370 HRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTKS-------------G---IN-------------MI-KS-----SE 414 (1075)
Q Consensus 370 H~~~~~~~~d~i~~l~~~g~~~~~~~~~~~~~~~~~-------------~---~~-------------~~-~~-----~~ 414 (1075)
|+++.+..||+|++|+++ . ....+...+...... + .. .. .. .+
T Consensus 606 H~~~~~~~ad~ii~l~~g-~-i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1490)
T TIGR01271 606 SKLEHLKKADKILLLHEG-V-CYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPE 683 (1490)
T ss_pred CChHHHHhCCEEEEEECC-E-EEEEcCHHHHHhcChHHHHHHhccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999863 2 222221111100000 0 00 00 00 00
Q ss_pred cc-c----chhh--h------------------------------hHHHhhhhcc------------cccccCCc-----
Q 001446 415 TD-R----QSDA--M------------------------------AVEQAFVTAK------------KDSAFSNP----- 440 (1075)
Q Consensus 415 ~~-~----~~~~--~------------------------------~~~~~~~~~~------------~~~~~~~~----- 440 (1075)
.. . .... . .......... .+......
T Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (1490)
T TIGR01271 684 TIKQSFKQPPPEFAEKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHH 763 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchhccccccccccccccccccccccccccccc
Confidence 00 0 0000 0 0000000000 00000000
Q ss_pred ------chhh---------------------hHHHH-h-hc-CC-CCC-----CC-CCCC------C--cc---c-cc--
Q 001446 441 ------KAQS---------------------YVSEV-I-AA-SP-IAD-----HN-VPLP------V--FP---Q-LK-- 469 (1075)
Q Consensus 441 ------~~~~---------------------~~~~~-~-~~-~~-~~~-----~~-~~~~------~--~~---~-~~-- 469 (1075)
.... ...+. . .. .. ... .. .... . .. . ..
T Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (1490)
T TIGR01271 764 GLQHQAQRRQSVLQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADE 843 (1490)
T ss_pred ccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHH
Confidence 0000 00000 0 00 00 000 00 0000 0 00 0 00
Q ss_pred --CCCCcchhhHHhHHHhhhcccchhhh------HHHHHHHHHHHHHHHHHHHhhhhc----chHH---------HHHHh
Q 001446 470 --SAPRILPLRVADMFKVLVPTVFDKQG------AQLLAVAFLVVSRTWISDRIASLN----GTTV---------KYVLE 528 (1075)
Q Consensus 470 --~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~----~~~~---------~~~~~ 528 (1075)
+..+... +..|+.|+........ ..++..++..+..+|+..|..... .... .....
T Consensus 844 e~~~~g~v~---~~vY~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 920 (1490)
T TIGR01271 844 RENVFETTT---WNTYLRYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIIT 920 (1490)
T ss_pred HHhhcCccc---HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCcccccccccc
Confidence 0111112 2334444433211000 011112233456778877653110 0000 00000
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCC-ceEEEecCCCCCCCCcchhHHHHHH
Q 001446 529 QDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEK 607 (1075)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~-~~~~~~~~~~~~~~~~~r~s~D~~~ 607 (1075)
.....+. +.+++..+++..+..++..++..+...+....+|.++++..++.+ .||+ ....+++.+||++|++.
T Consensus 921 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~----~~~~G~ilnRfs~Di~~ 994 (1490)
T TIGR01271 921 PTSAYYI--FYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLN----TMKAGRILNRFTKDMAI 994 (1490)
T ss_pred CcchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC----CCChhHHHHHHHHHHHH
Confidence 0011111 111111111111111112222233334445566666666666654 5665 33457889999999999
Q ss_pred HHHHHHHHhhhhhHhHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchh----hhhHHHH
Q 001446 608 LTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGT----FRFMHER 683 (1075)
Q Consensus 608 ~~~~l~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~ 683 (1075)
++..++..+..++..++.++.+.+.++.+.+. ++++++++++..++++.+. .+...+.++.+.. ......+
T Consensus 995 id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~--l~l~~~~l~~~~~~~~~~~---~~~~r~l~~~~~~~~s~l~~~~~E 1069 (1490)
T TIGR01271 995 IDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPY--IFIAAIPVAVIFIMLRAYF---LRTSQQLKQLESEARSPIFSHLIT 1069 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999887777666555444333333222211 1111111111111111110 1111111222211 1122233
Q ss_pred HHHhhHHhhhcCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhh
Q 001446 684 LRAHAESVAFFGGGAREKAMIESRFRELLEHSL-LLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQ 762 (1075)
Q Consensus 684 ~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1075)
...+..+|++|+++....+.+.+.......... .....+|+...++.+.. .+. + ....+.++... ...
T Consensus 1070 tl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~-~~~--~-~~~~l~~~~~~-------~~~ 1138 (1490)
T TIGR01271 1070 SLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFV-FFF--I-AVTFIAIGTNQ-------DGE 1138 (1490)
T ss_pred HhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--H-HHHHHHHHHhc-------CCc
Confidence 334678999999877665555444443332222 23445565433322211 100 0 00011111100 112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCc------------ccCCccCcCCC
Q 001446 763 GELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDE------------ISGSSQHKWNS 830 (1075)
Q Consensus 763 g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~------------~~~~~~~~w~~ 830 (1075)
|.++.++.+. ..+..++..+...+..+.....+++||.++.+.+++.+..... ....+|+.||.
T Consensus 1139 g~~g~~l~~~----~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~ 1214 (1490)
T TIGR01271 1139 GEVGIILTLA----MNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPS 1214 (1490)
T ss_pred cHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCC
Confidence 3333333222 2233455566666677778889999999998765443211100 01123446886
Q ss_pred CCCCCceEEeeeeeeCCC-ccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCC
Q 001446 831 TDYQDSISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGS 907 (1075)
Q Consensus 831 ~~~~g~I~f~~V~~~yp~-~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~ 907 (1075)
.|.|+|+||+|+|++ .++||+|+||+|+||||||||||||||||||+++|+|+|+ .+|+|.|||+||+++ +.+
T Consensus 1215 ---~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1215 ---GGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred ---CCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHH
Confidence 689999999998875 6889999999999999999999999999999999999998 799999999999988 458
Q ss_pred cCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc
Q 001446 908 GCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 987 (1075)
Q Consensus 908 r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 987 (1075)
|++|++|||||+||+||||+||+ |.. ..+|++++++++.++|++++..+|+||||.+
T Consensus 1291 R~~is~IpQdp~LF~GTIR~NLd-p~~----------------------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v 1347 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFSGTFRKNLD-PYE----------------------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVL 1347 (1490)
T ss_pred HhceEEEeCCCccCccCHHHHhC-ccc----------------------CCCHHHHHHHHHHCCCHHHHHhCcccccccc
Confidence 89999999999999999999998 542 1357888999999999999999999999987
Q ss_pred -ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcC
Q 001446 988 -NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDG 1064 (1075)
Q Consensus 988 -~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g 1064 (1075)
+.|.+|||||||||||||||||+|||||||||||+||.+++..|++.+++ .+||||+||||++++..+|++++|++|
T Consensus 1348 ~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G 1427 (1490)
T TIGR01271 1348 VDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGS 1427 (1490)
T ss_pred ccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 57889999999999999999999999999999999999999999998865 599999999999999999999999877
Q ss_pred C
Q 001446 1065 E 1065 (1075)
Q Consensus 1065 ~ 1065 (1075)
.
T Consensus 1428 ~ 1428 (1490)
T TIGR01271 1428 S 1428 (1490)
T ss_pred E
Confidence 5
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-77 Score=684.31 Aligned_cols=470 Identities=20% Similarity=0.250 Sum_probs=354.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHh
Q 001446 537 LIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLV 616 (1075)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~ 616 (1075)
+.++++..+++..+..+++.+...+...+.|..+|.+++++ +..||| ..+.+++.+|++.|...+...++..+
T Consensus 194 l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~Q---diaFFD----~nktGeL~SRLtsD~~~vs~svs~nl 266 (716)
T KOG0058|consen 194 LLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQ---DIAFFD----ENKTGELISRLTSDTQIVSNSVSQNL 266 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhc----cCCccHHHhhhhhhHHHHHHHHHHHH
Confidence 34455566667777788888999999999999999988874 567887 34578899999999999877776655
Q ss_pred hhhhHh-------HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhH
Q 001446 617 TGMVKP-------SVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAE 689 (1075)
Q Consensus 617 ~~~i~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 689 (1075)
...+.+ +...++.+|+|+++.. +.+ ++.......+++.+.+++.+.|...+......++..+..+
T Consensus 267 s~~lR~~~~~~g~~~~M~~~S~~Ltlv~~-----i~~---P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~r 338 (716)
T KOG0058|consen 267 SDGLRNLVQGFGGLGFMFSLSWRLTLVTL-----IVV---PIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMR 338 (716)
T ss_pred HHHHHHHHHHHHhHHHHhhhhHHHHHHHH-----HHh---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444433 3334677888876531 111 1112223333444556666667766666667778888899
Q ss_pred HhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHH
Q 001446 690 SVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHAL 769 (1075)
Q Consensus 690 ~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l 769 (1075)
||+.|++|+.|..++.+..++.++..++.......+.....+.. .......++|+........ .+.|++..++
T Consensus 339 TVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~-----~~~~~siL~~Gg~Lv~~g~--mt~g~L~sFl 411 (716)
T KOG0058|consen 339 TVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLG-----NLAVLSILFYGGHLVLTGS--LTSGALSSFL 411 (716)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHH-----hHHHHHHHHhccchhhcCc--cchhHHHHHH
Confidence 99999999999888877777777655443222211111111111 1122234445443322211 2344444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCCc
Q 001446 770 RFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ 849 (1075)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~ 849 (1075)
. +..+...++..+...+.++.+..+|.+|++|++++.+..+.. +. .-|. ..+|.|+|+||+|+||++
T Consensus 412 l----Y~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~-----G~---~~p~-~~~G~IeF~~VsFaYP~R 478 (716)
T KOG0058|consen 412 L----YQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT-----GT---LAPD-HLQGVIEFEDVSFAYPTR 478 (716)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC-----Cc---cccc-cccceEEEEEeeeecCCC
Confidence 3 334556677888888899999999999999999877655432 10 1122 358999999999999986
Q ss_pred c--ccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEEEcCCCCCCCcch
Q 001446 850 K--LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYVPQRPYTCLGTL 925 (1075)
Q Consensus 850 ~--~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~VpQdP~Lf~gTi 925 (1075)
| +||+|+||+|+|||+||+|||||+||||++++|+|||||++|+|.+||+||++++ ++|++|++|.|||+||+|||
T Consensus 479 p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI 558 (716)
T KOG0058|consen 479 PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSI 558 (716)
T ss_pred CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccH
Confidence 4 6999999999999999999999999999999999999999999999999999994 57899999999999999999
Q ss_pred hhhhcCCCC--hHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHH
Q 001446 926 RDQIIYPLS--REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLG 1002 (1075)
Q Consensus 926 r~NL~~p~~--~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrla 1002 (1075)
+|||.|+.. ++|++.+|+++|++++|+ ...|+||||.+ +.|.+||||||||||
T Consensus 559 ~eNI~YG~~~~t~e~i~~AAk~ANah~FI------------------------~~~p~gY~T~VGEkG~qLSGGQKQRIA 614 (716)
T KOG0058|consen 559 RENIAYGLDNATDEEIEAAAKMANAHEFI------------------------TNFPDGYNTVVGEKGSQLSGGQKQRIA 614 (716)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhChHHHH------------------------HhCccccccccCCccccccchHHHHHH
Confidence 999999754 455556788887765544 34578899976 689999999999999
Q ss_pred HHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1003 MARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1003 iARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
|||||+|||+||||||||||||+++|..+|+.+.. .++|||+|||||+|++-.|++.++++|.
T Consensus 615 IARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~ 679 (716)
T KOG0058|consen 615 IARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGR 679 (716)
T ss_pred HHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCe
Confidence 99999999999999999999999999999998854 5899999999999999999999998775
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-72 Score=617.21 Aligned_cols=570 Identities=36% Similarity=0.620 Sum_probs=464.8
Q ss_pred hhHHhHHHhhhcccchhhhHHH-HHHHHHHHHHHHHHHHhhhhcchHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 477 LRVADMFKVLVPTVFDKQGAQL-LAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSI 555 (1075)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (1075)
.+..++++.++++......+.+ ++.++.....+...+.+....+.++.++..++...|..++..++++..+......+.
T Consensus 63 ~k~~~ilkil~p~~~~~~~~~l~l~~~~l~~~~~~~~y~~~~~~~~~y~al~~kd~~~F~~~~~~~~~~~~~~s~~~a~~ 142 (659)
T KOG0060|consen 63 QKFLQILKILFPSTFSSQTALLLLALVALTLLTTADVYMIGNIPTKFYVALINKDAELFKRLLFKYVLLIPGISLLNALL 142 (659)
T ss_pred HHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHhHhheecccchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888775544433 344444444444444455556667777788888888888777777777777777788
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHH
Q 001446 556 RHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKA 635 (1075)
Q Consensus 556 ~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~~~~~~~~~l~~ 635 (1075)
.+....+.++||+++++++++.||+...||++.+.+...+|||||+++|++.++..+..+...++.+++++++|.|+++.
T Consensus 143 ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~ 222 (659)
T KOG0060|consen 143 KFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFE 222 (659)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhh
Confidence 88889999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q 001446 636 LTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHS 715 (1075)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~ 715 (1075)
..++.+++.++.|++++..+.+.+.+++.+++.+++++|++||+.|.+++.|+|.||||++++.|.....++|++++++.
T Consensus 223 s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l 302 (659)
T KOG0060|consen 223 SAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHL 302 (659)
T ss_pred hcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHhhchhhHHHHHH-HHHHHhhcc-cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 716 LLLLKKKWLFGILDDFVTKQLPHNVTWGLS-LLYAMEHKG-DRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKF 793 (1075)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1075)
..+...+|+.++.++++. .+...++|.++ ..+ +.+ .... .+..++...+..-+.++..++.+|+.+......+
T Consensus 303 ~~l~~~r~~l~f~~n~~~-Ylg~ilsy~vi~~p~---Fs~h~y~~-~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~l 377 (659)
T KOG0060|consen 303 RELMSFRFWLGFIDNIFD-YLGGILSYVVIAIPF---FSGHVYDD-LSPAELSGLISNNAFVFIYLISAFGRLVDLSRDL 377 (659)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhhheeeEEeeee---ecccccCC-cCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhH
Confidence 998888888888877665 22222221110 001 111 0111 1244555555544555556777899999999999
Q ss_pred HHHhhhhhhHHHHHHHHhhcCCCC------------CcccCCccCcCCCCC-CCCceEEeeeeeeCCC-cccccccccee
Q 001446 794 VELSGGINRIFELEELLDAAQPGD------------DEISGSSQHKWNSTD-YQDSISFSKLDIITPS-QKLLARQLTFE 859 (1075)
Q Consensus 794 ~~~~~s~~Ri~~~~~~~~~~~~~~------------~~~~~~~~~~w~~~~-~~g~I~f~~V~~~yp~-~~~vL~~vs~~ 859 (1075)
.++++.+.||-++++...+..... .......++.|+... .+-.|+|++|++..|+ ++.+.+|+||+
T Consensus 378 s~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~ 457 (659)
T KOG0060|consen 378 SRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLE 457 (659)
T ss_pred HHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeE
Confidence 999999999999988765433110 000011122333211 1457999999999998 55566779999
Q ss_pred ecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHH
Q 001446 860 IVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAE 939 (1075)
Q Consensus 860 I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~ 939 (1075)
|+.|+.+.|+||||||||||++.|.++|+..+|+|..+..- .-..+-||||.||+-.||+|+++.||....+..
T Consensus 458 V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~------~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~ 531 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDG------GPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMD 531 (659)
T ss_pred ecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccC------CCCceEEecCCCCccccchhheeeccCcccccc
Confidence 99999999999999999999999999999999999865431 013499999999999999999999997643311
Q ss_pred HHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccc--cccccCCChhHHHHHHHHHHhhcCCCEeEee
Q 001446 940 LRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN--LNWEDILSLGEQQRLGMARLFFHKPKFGILD 1017 (1075)
Q Consensus 940 ~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~--~~~g~~LSgGQrQrlaiARAlLr~p~ILiLD 1017 (1075)
.....|++|...|+.++|.+++++. +|+|++ .+|.+.||+||+||||+||.++++|++.|||
T Consensus 532 ---------------~~~~~d~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLD 595 (659)
T KOG0060|consen 532 ---------------SKSASDEDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILD 595 (659)
T ss_pred ---------------ccCCCHHHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEee
Confidence 1224689999999999999999987 899964 5899999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCceEEEecCCCCchhhccceEEEEcCCcceEEecCC
Q 001446 1018 ECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTIS 1074 (1075)
Q Consensus 1018 EATSalD~~~e~~i~~~~~~~~~TvI~IaHRls~i~~~~~~l~l~~g~g~~~~~~~~ 1074 (1075)
|||||+|.+.|.++++.+++.|.|.|+|.||.++++|||.+|.+ ||.|+|+|+.|+
T Consensus 596 E~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfHd~~L~~-~g~g~w~~~~I~ 651 (659)
T KOG0060|consen 596 ECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFHDYVLRM-DGRGSWRFHQID 651 (659)
T ss_pred chhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhhhEEEEe-cCCCceEEEEec
Confidence 99999999999999999999999999999999999999999999 899999999886
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-66 Score=584.44 Aligned_cols=198 Identities=32% Similarity=0.399 Sum_probs=164.7
Q ss_pred cEEEEeEEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCC----ccEEEeCCcC------c-
Q 001446 181 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV----SGHIAKPGVG------S- 246 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~---~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~----~G~i~~~~~~------~- 246 (1075)
.++++|+++.|... .++++|+||++.+||+++|+|+|||||||+.++|+|+.++. +|+|.++|.+ .
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 68999999987532 26999999999999999999999999999999999999988 8999999974 1
Q ss_pred --c-ccccEEEEcCCCCC---CcCCHHHHhcCCCCCCc-ccCcCCHHHHHHHHHHcCChhHHhc--CCCCcccCCCCCCC
Q 001446 247 --D-LNKEIFYVPQRPYT---AVGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLLDR--YPPEKEINWGDELS 317 (1075)
Q Consensus 247 --~-~~~~i~~v~Q~~~~---~~~tv~~ni~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~~~~~~g~~LS 317 (1075)
. ..++|+|+||+|.- +..||.++|.-...... .......+++.++++.++|.+-..+ +| ++||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP--------heLS 156 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP--------HQLS 156 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC--------cccC
Confidence 1 23679999999952 23588887764221111 0122345677889999999876554 88 7999
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 318 LGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 318 gGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
||||||+.||+||+.+|++||+||||++||+.+..+|++.+++ .|+++|+||||+..+. .||+|++|.+
T Consensus 157 GG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~ 230 (539)
T COG1123 157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYK 230 (539)
T ss_pred chHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEEC
Confidence 9999999999999999999999999999999999999888753 5999999999999985 6999999986
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-65 Score=615.54 Aligned_cols=456 Identities=20% Similarity=0.265 Sum_probs=320.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcc-CCceEEEecCCCCCCCCcchhHHHHHHHHHHHHH-------HhhhhhHh
Q 001446 551 IAPSIRHLTARLALGWRIRMTQHLLKSYLR-KNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSG-------LVTGMVKP 622 (1075)
Q Consensus 551 ~~~~~~~~~~~~~~~~r~~l~~~ll~~~l~-~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~-------~~~~~i~~ 622 (1075)
....+.+...+...+.|.... +++|| +..|||... .+++..|++.|++.+.+.+.. .+..++.+
T Consensus 91 q~~c~~~~geRq~~riR~~yl----~~iLrQdi~~fD~~~----~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g 162 (1228)
T KOG0055|consen 91 QVSCWMRTGERQTARIRSKYL----KAILRQDIGWFDTNS----TGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAG 162 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHhCccceeeccc----ccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666665444 44444 458888433 267888999999887665433 33445556
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHH
Q 001446 623 SVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKA 702 (1075)
Q Consensus 623 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~ 702 (1075)
++..+++.|+|+++.... ..+.++.+..+.+. +...+.+++...+.--...++..+..+|+.+|++++.|..
T Consensus 163 ~ii~F~~~W~Ltlv~l~~----~Pli~~~g~~~a~~----~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ 234 (1228)
T KOG0055|consen 163 FVIGFYYGWKLTLVMLSF----IPLIAIAGGLLARF----LSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIE 234 (1228)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHH
Confidence 666688899998774221 11112222222222 2233444444333344556777778899999999887754
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHH
Q 001446 703 MIESRFRELLEHSLLLL-KKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFL 781 (1075)
Q Consensus 703 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~ 781 (1075)
+|.+.++...+.. ++..+.++...+ ..+.....|++++||+..+..... .+.|.+...+ ..+.....
T Consensus 235 ----ry~~~L~~~~k~gi~~g~~~G~~~G~--~~~~~~~~~a~~~WyG~~li~~~~--~~~g~v~~v~----~~vl~g~~ 302 (1228)
T KOG0055|consen 235 ----RYSKALENALKFGIKKGLFKGLGLGF--TFFLLFASYALAFWYGSTLILNGG--YNGGDVITVF----FSVLIGGM 302 (1228)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHhcCC--CCCceEEEEE----eehhhhhh
Confidence 4555555544433 333333332211 123345567888888844321100 0111110000 01111234
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCCcc--cccccccee
Q 001446 782 AFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQK--LLARQLTFE 859 (1075)
Q Consensus 782 ~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~--~vL~~vs~~ 859 (1075)
++++.......+....+++.+|++.++..+..++.. ..+ -+....+|.|+|+||+|+||++| ++|+|+||+
T Consensus 303 sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~--~~~-----~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~ 375 (1228)
T KOG0055|consen 303 SLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYS--KGG-----RVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLK 375 (1228)
T ss_pred hhhccccchHHHhccccchHHHHHHhcCCCCCCccc--ccC-----CcccccccceEEEEEEecCCCCCcchhhCCeEEE
Confidence 556666666777888899999999887665443321 111 12234589999999999999865 799999999
Q ss_pred ecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCCC--Ch
Q 001446 860 IVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPL--SR 935 (1075)
Q Consensus 860 I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p~--~~ 935 (1075)
|++||+|||||+|||||||++++|+|||||++|+|.|||.|++.+ +++|++|++|.|||+||++||+|||.|+. .+
T Consensus 376 i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat 455 (1228)
T KOG0055|consen 376 IPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDAT 455 (1228)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCccc
Confidence 999999999999999999999999999999999999999999987 67899999999999999999999999954 34
Q ss_pred HHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEe
Q 001446 936 EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFG 1014 (1075)
Q Consensus 936 ~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~IL 1014 (1075)
.+++.+|+|+++. ++++..+|+||||.+ +.|.+|||||||||||||||+|+|+||
T Consensus 456 ~~~i~~a~k~ana------------------------~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~IL 511 (1228)
T KOG0055|consen 456 REEIEEAAKAANA------------------------HDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKIL 511 (1228)
T ss_pred HHHHHHHHHHccH------------------------HHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEE
Confidence 5555566665554 345556688999976 678899999999999999999999999
Q ss_pred EeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1015 ILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1015 iLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
||||||||||+++|+.+|+++.. .|+|+|+|||||++++.+|.++++++|.
T Consensus 512 LLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~ 564 (1228)
T KOG0055|consen 512 LLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGK 564 (1228)
T ss_pred EecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCE
Confidence 99999999999999999998864 6999999999999999999999998886
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-63 Score=564.92 Aligned_cols=519 Identities=27% Similarity=0.426 Sum_probs=411.3
Q ss_pred HHHHHHHHHhhhhcchHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCceE
Q 001446 506 VSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFY 585 (1075)
Q Consensus 506 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~ 585 (1075)
+.....+.+++.+++.+++++...|...|+..+.++...++....+.....++...+..+||++|+++++..||++..||
T Consensus 57 l~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y 136 (604)
T COG4178 57 LLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYY 136 (604)
T ss_pred HHHhheeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence 33344555666667788888888888888888887777777776777778889999999999999999999999999999
Q ss_pred EEecCC--CCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHhhch--------------hhHHHHHHHH
Q 001446 586 KVFNMS--SKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQ--------------RGVAILYAYM 649 (1075)
Q Consensus 586 ~~~~~~--~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~~~~~~~~~l~~~~~~--------------~~~~~~~~~~ 649 (1075)
+..... ...+|||||+++|+..+.+....+..+++.++++++.|+..||-+++. ..+.+++.|+
T Consensus 137 ~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya 216 (604)
T COG4178 137 RLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYA 216 (604)
T ss_pred HHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHH
Confidence 877665 455899999999999999999999999999999999999888855442 1233455666
Q ss_pred HHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 001446 650 LLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILD 729 (1075)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1075)
+.+......+++++.+++.+++++|+.||+.+.++++++|.|++|+||+.|+..+..+|....++...+..+...+..+.
T Consensus 217 ~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~ 296 (604)
T COG4178 217 ISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQ 296 (604)
T ss_pred HHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 66666777889999999999999999999999999999999999999999999999999999988766554333222221
Q ss_pred HHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 001446 730 DFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEEL 809 (1075)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~ 809 (1075)
.... .+...+++..+.. ..+.|. ...|. ++.....+++...+++++...++.+++..+...|+.++.+.
T Consensus 297 ~gy~-~~s~v~P~li~ap--~~f~g~----i~~G~----lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~a 365 (604)
T COG4178 297 LGYG-WLSVVLPILIAAP--RYFSGQ----ITFGG----LMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQA 365 (604)
T ss_pred hhhh-HHHHHHHHHhccH--hhhcCc----ChHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 1111 1111111111100 001111 11222 22233455667778899999999999999999999999877
Q ss_pred HhhcCCCCCcccCC-ccCcCCCCCCCCceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCC
Q 001446 810 LDAAQPGDDEISGS-SQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 810 ~~~~~~~~~~~~~~-~~~~w~~~~~~g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~ 888 (1075)
.+..+.+....... ....-.... +..|+|+|++...|++.+.|+++||.|+|||++.|.|+||||||||+++|.|+||
T Consensus 366 i~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP 444 (604)
T COG4178 366 LEAAQMDTEKPARTGRRIDFDDNA-DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP 444 (604)
T ss_pred HHhccCcccccCcccccccccccc-cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc
Confidence 65332211100000 000000111 4689999999999998899999999999999999999999999999999999999
Q ss_pred CCCCeEecCCCCCccccCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHH
Q 001446 889 VVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 968 (1075)
Q Consensus 889 ~~sG~I~idg~di~~~~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~ 968 (1075)
..+|+|.++.. .++.|+||+||+..||+||.|+||.+.+ ...|+++.++|.
T Consensus 445 ~g~G~I~~P~~---------~~~lflpQ~PY~p~GtLre~l~YP~~~~--------------------~~~d~~l~~vL~ 495 (604)
T COG4178 445 WGSGRISMPAD---------SALLFLPQRPYLPQGTLREALCYPNAAP--------------------DFSDAELVAVLH 495 (604)
T ss_pred cCCCceecCCC---------CceEEecCCCCCCCccHHHHHhCCCCCC--------------------CCChHHHHHHHH
Confidence 99999998843 4689999999999999999999997642 256889999999
Q ss_pred hCCchhhhhhhccCCccccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEec
Q 001446 969 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSS 1046 (1075)
Q Consensus 969 ~~~L~~~i~~~~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~Ia 1046 (1075)
+|+|.++++++ |....|...||+|||||||+||++|++||+++|||||||||.++|..+++++++ +++|+|.|+
T Consensus 496 ~vgL~~L~~rl----~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~ 571 (604)
T COG4178 496 KVGLGDLAERL----DEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVG 571 (604)
T ss_pred HcCcHHHHHHH----hccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEec
Confidence 99999999886 555679999999999999999999999999999999999999999999999987 799999999
Q ss_pred CCCCchhhccceEEEEcCCcceEE
Q 001446 1047 QRPALIPFHSLELRLIDGEGNWEL 1070 (1075)
Q Consensus 1047 HRls~i~~~~~~l~l~~g~g~~~~ 1070 (1075)
||.+...||++.|.+ .++|+|.-
T Consensus 572 Hr~tl~~~h~~~l~l-~~~~~~~~ 594 (604)
T COG4178 572 HRPTLWNFHSRQLEL-LDDAGGQN 594 (604)
T ss_pred cchhhHHHHhhheee-cccccccc
Confidence 999999999999999 57777744
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-61 Score=592.69 Aligned_cols=566 Identities=37% Similarity=0.635 Sum_probs=419.2
Q ss_pred hHHhHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 478 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRH 557 (1075)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1075)
++..++++..+++.++..+.++..++..+...+++..+..+.+...+.....+...+...+..+++..++..+...+..+
T Consensus 78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~ 157 (659)
T TIGR00954 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKY 157 (659)
T ss_pred HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666665444444444444555555666666666665555555555544544444444445555566666777
Q ss_pred HHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHhh
Q 001446 558 LTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALT 637 (1075)
Q Consensus 558 ~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~~~~~~~~~l~~~~ 637 (1075)
+..++...+|.+++.++++.+++...+|++...+...+++++|+++|++.+...+...+..++.++++++++.+.++...
T Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~ 237 (659)
T TIGR00954 158 LLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTAL 237 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78888889999999999999999888888665555679999999999999999999999999998888887777776533
Q ss_pred chhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHHHHHHHHHHHHHHH
Q 001446 638 GQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLL 717 (1075)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~ 717 (1075)
.+....++++++++.....+.+.+++.....+.++.++.++..+.+...+.++|++|++++.|.+.+.+.+.++.+...+
T Consensus 238 ~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~ 317 (659)
T TIGR00954 238 GSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNL 317 (659)
T ss_pred chHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455556666667778888999999999999999999999999999999999999999999999999998888776
Q ss_pred HHHHHHHhhhhHHHHHhhchhhHHH-HHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 718 LLKKKWLFGILDDFVTKQLPHNVTW-GLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVEL 796 (1075)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1075)
......++..+..++.......+.+ +++..+.. ..+......+.|.+...+......+..++.+++.+.....++.++
T Consensus 318 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~-~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~ 396 (659)
T TIGR00954 318 IIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFD-KTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRL 396 (659)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555555544443211111111 11111110 000000001123322212222223445677889999999999999
Q ss_pred hhhhhhHHHHHHHHhhcCCCC----Cccc--C------CccCcCC---CCCCCCceEEeeeeeeCCCccccccccceeec
Q 001446 797 SGGINRIFELEELLDAAQPGD----DEIS--G------SSQHKWN---STDYQDSISFSKLDIITPSQKLLARQLTFEIV 861 (1075)
Q Consensus 797 ~~s~~Ri~~~~~~~~~~~~~~----~~~~--~------~~~~~w~---~~~~~g~I~f~~V~~~yp~~~~vL~~vs~~I~ 861 (1075)
.++.+||.++.+.+++.+... .... . ..+..++ .....+.|+|+||+++||+++++|+|+||+|+
T Consensus 397 ~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~il~~isl~i~ 476 (659)
T TIGR00954 397 AGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVP 476 (659)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCCCeeeecceEEEC
Confidence 999999999998765432110 0000 0 0000010 01124679999999999876689999999999
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHH
Q 001446 862 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELR 941 (1075)
Q Consensus 862 ~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~ 941 (1075)
+||+++|+||||||||||+++|.|+|+|.+|+|.+|+ |.++++|||+|++|++|++|||.||....+.
T Consensus 477 ~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~---------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~--- 544 (659)
T TIGR00954 477 SGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA---------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDM--- 544 (659)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC---------CCcEEEECCCCCCCCcCHHHHHhcCCChhhh---
Confidence 9999999999999999999999999999999999875 4579999999999999999999987532110
Q ss_pred HhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCC
Q 001446 942 ALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1021 (1075)
Q Consensus 942 a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATS 1021 (1075)
..+...++++.++++.+++.+++++ |.|+|+..+|+.+||||||||++||||++++|++||||||||
T Consensus 545 ------------~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts 611 (659)
T TIGR00954 545 ------------KRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTS 611 (659)
T ss_pred ------------hccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 0011245678889999999988877 789999988889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCceEEEecCCCCchhhccceEEEEcCCcceEE
Q 001446 1022 ATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWEL 1070 (1075)
Q Consensus 1022 alD~~~e~~i~~~~~~~~~TvI~IaHRls~i~~~~~~l~l~~g~g~~~~ 1070 (1075)
+||.++++.+++.+++.++|+|+|+||++++++||+++++ +|+|+|+|
T Consensus 612 ~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~d~il~l-~~~g~~~~ 659 (659)
T TIGR00954 612 AVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHEYLLYM-DGRGGYQF 659 (659)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhCCEEEEE-eCCCCccC
Confidence 9999999999998877799999999999999999999999 79999986
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-64 Score=601.80 Aligned_cols=197 Identities=24% Similarity=0.317 Sum_probs=166.5
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC--CccEEEeCCcCc-------ccccc
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL--VSGHIAKPGVGS-------DLNKE 251 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~--~~G~i~~~~~~~-------~~~~~ 251 (1075)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.+. ..++.
T Consensus 5 ~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 5 LLEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred eEEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 689999999995 46899999999999999999999999999999999999996 899999998641 12467
Q ss_pred EEEEcCCCCCCc-CCHHHHhcCCCCCC--cc-cCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHH
Q 001446 252 IFYVPQRPYTAV-GTLRDQLIYPLTSD--QE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 327 (1075)
Q Consensus 252 i~~v~Q~~~~~~-~tv~~ni~~~~~~~--~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lA 327 (1075)
++||||+|.++. .|++||+.++.... .. ......+++.++++.+++.+..++.+ .+||||||||++||
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGqkqrv~la 155 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV--------GNLGLGQQQLVEIA 155 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch--------hhCCHHHHHHHHHH
Confidence 999999997765 59999998875321 00 01112345778899999987766655 68999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 328 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 328 ral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|||+.+|+++||||||++||+.....+.+.+++ .|+|+|++|||++.+. .||++++|++
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~ 218 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRD 218 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEEC
Confidence 999999999999999999999999999887754 4889999999999875 6999999985
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-63 Score=590.63 Aligned_cols=461 Identities=20% Similarity=0.287 Sum_probs=319.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHH-
Q 001446 546 AASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSV- 624 (1075)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~- 624 (1075)
+...+..+.+.++..++-..+..++++|+++. +..||. ....+++.+|+ +|++.+...+...+..++..++
T Consensus 209 ~l~~lr~~~~~~~~~rld~~l~~~~~~hll~L---pl~~f~----~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~ 280 (709)
T COG2274 209 LLRLLRTYLIAHLGKRLDLELSGRFFRHLLRL---PLSYFE----KRSVGEIISRV-RELEQIREFLTGSILTLIIDLLF 280 (709)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcC---cHHHcc----CCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666667777777777777777763 224443 23345566665 5666666666554444332222
Q ss_pred ------HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcH
Q 001446 625 ------DILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGA 698 (1075)
Q Consensus 625 ------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~ 698 (1075)
.+++++|.|+++. ++.+.+++++...+ .|.+.+.+.+.-...+.-.....+...+.++++..+.|.
T Consensus 281 ~~i~l~vm~~ys~~L~li~----l~~~~l~~l~~~~~----~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~ 352 (709)
T COG2274 281 ALIFLAVMFLYSWKLTLIV----LAAIPLNVLITLIF----QPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEP 352 (709)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhH
Confidence 2345677776553 12222222222222 222233333333333333344455666789999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHH
Q 001446 699 REKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQ 778 (1075)
Q Consensus 699 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~ 778 (1075)
+-....++.+.+..+...+.....-....+..++. .+...+.+|++........ .+.|.+ ..+.+....
T Consensus 353 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~l~~v~iL~~G~~lVl~~~--lTlG~L----iAf~~l~~~ 421 (709)
T COG2274 353 RFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQ-----QLSSVLILWFGAILVLEGE--LTLGQL----VAFNMLAGY 421 (709)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCC--cchHHH----HHHHHHHHH
Confidence 76666666776666654443332222232222332 2222334444433221111 112222 222334455
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCCc-cccccccc
Q 001446 779 SFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ-KLLARQLT 857 (1075)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~-~~vL~~vs 857 (1075)
...++..+.+...+++++..+.+|+.++.+.+++.+.+.. +.+.| ..+|+|+|+||+|+|+.+ +++|+|+|
T Consensus 422 f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~-----~~~~~---~~~g~I~~~nvsf~y~~~~~~vL~~is 493 (709)
T COG2274 422 FISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT-----LIHLP---KLQGEIEFENVSFRYGPDDPPVLEDLS 493 (709)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc-----ccccc---ccCceEEEEEEEEEeCCCCcchhhcee
Confidence 6678889999999999999999999999887655432210 11122 247999999999998764 67999999
Q ss_pred eeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCC--C
Q 001446 858 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYP--L 933 (1075)
Q Consensus 858 ~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p--~ 933 (1075)
|+|+|||+|||||+||||||||+++|.|+|+|++|+|.+||+|+.++ ..+|++|++|||||+||+|||||||... .
T Consensus 494 L~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~ 573 (709)
T COG2274 494 LEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPE 573 (709)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999998 4589999999999999999999999863 3
Q ss_pred ChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCC
Q 001446 934 SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPK 1012 (1075)
Q Consensus 934 ~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ 1012 (1075)
..+|++++||+.++ .++++.++|.||||.+ +.|.+|||||||||+||||++++|+
T Consensus 574 ~~~e~i~~A~~~ag------------------------~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ 629 (709)
T COG2274 574 ATDEEIIEAAQLAG------------------------AHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPK 629 (709)
T ss_pred CCHHHHHHHHHHhC------------------------cHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCC
Confidence 34445555555554 4455666789999986 6889999999999999999999999
Q ss_pred EeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1013 FGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1013 ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
||||||||||||.++|+.+.+.+.+ .++|+|+||||+++++.+|+++++++|.
T Consensus 630 ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gk 684 (709)
T COG2274 630 ILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGK 684 (709)
T ss_pred EEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCc
Confidence 9999999999999999999887765 4799999999999999999999998775
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=607.77 Aligned_cols=199 Identities=23% Similarity=0.299 Sum_probs=164.1
Q ss_pred ccEEEEeEEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----------
Q 001446 180 NYIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----------- 245 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~---~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~----------- 245 (1075)
..|+++|+++.|++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 47999999999963 2479999999999999999999999999999999999999999999987731
Q ss_pred ---c-----cc-cccEEEEcCCC--CCCc-CCHHHHhcCCCCCC-cccCcCCHHHHHHHHHHcCCh---hHHhcCCCCcc
Q 001446 246 ---S-----DL-NKEIFYVPQRP--YTAV-GTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE---YLLDRYPPEKE 309 (1075)
Q Consensus 246 ---~-----~~-~~~i~~v~Q~~--~~~~-~tv~~ni~~~~~~~-~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~~ 309 (1075)
. .+ +++|+||+|+| .++. .||.||+.++.... ........+++.++++.++|. +..++.|
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~---- 166 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYP---- 166 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCC----
Confidence 0 11 24799999998 3444 69999998763211 111111235677899999995 3466666
Q ss_pred cCCCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEE
Q 001446 310 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSL 384 (1075)
Q Consensus 310 ~~~g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l 384 (1075)
.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.+++ .|+|+|+||||++.+ ..||+|++|
T Consensus 167 ----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 167 ----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred ----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 68999999999999999999999999999999999999988877653 389999999999987 579999999
Q ss_pred cC
Q 001446 385 DG 386 (1075)
Q Consensus 385 ~~ 386 (1075)
++
T Consensus 243 ~~ 244 (623)
T PRK10261 243 YQ 244 (623)
T ss_pred eC
Confidence 85
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-63 Score=593.75 Aligned_cols=197 Identities=24% Similarity=0.247 Sum_probs=166.3
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc-------cccccEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------~~~~~i~ 253 (1075)
.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. ..++.++
T Consensus 5 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 5 YISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred eEEEeeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 689999999995 46799999999999999999999999999999999999999999999998541 1235699
Q ss_pred EEcCCCCCCc-CCHHHHhcCCCCCC----cc---cCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHH
Q 001446 254 YVPQRPYTAV-GTLRDQLIYPLTSD----QE---VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 325 (1075)
Q Consensus 254 ~v~Q~~~~~~-~tv~~ni~~~~~~~----~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~ 325 (1075)
|+||++.++. .|++||+.++.... .. ......+++.++++.+++.+..++.+ .+||||||||++
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgG~~qrv~ 155 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV--------ANLSISHKQMLE 155 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch--------hhCCHHHHHHHH
Confidence 9999987765 49999998764211 00 00112345678899999987777665 689999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 326 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 326 lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|||||+.+|+++||||||++||+.+...+.+.+++ .|+|+|+||||++.+. .||++++|++
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKD 220 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999887754 4899999999999875 7999999985
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-63 Score=592.74 Aligned_cols=197 Identities=25% Similarity=0.352 Sum_probs=166.5
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc------c-ccccEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~-~~~~i~ 253 (1075)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .++.++
T Consensus 4 ~i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 4 LLQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred eEEEeeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 589999999995 46799999999999999999999999999999999999999999999998541 1 245799
Q ss_pred EEcCCCCCCc-CCHHHHhcCCCCCCcc---c-CcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHH
Q 001446 254 YVPQRPYTAV-GTLRDQLIYPLTSDQE---V-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 328 (1075)
Q Consensus 254 ~v~Q~~~~~~-~tv~~ni~~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAr 328 (1075)
|+||++.++. .|++||+.++...... . .....+++.++++.+++.+..++.+ .+||||||||++|||
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~ 154 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV--------GELSIGEQQMVEIAK 154 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch--------hhCCHHHHHHHHHHH
Confidence 9999987765 5999999886432110 0 0111345678899999987777655 689999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 329 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 329 al~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
||+.+|++|||||||++||+.+...+.+.+++ .|+|+|++|||++.+. .||++++|++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRD 216 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999877653 4889999999999874 7999999975
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-62 Score=529.15 Aligned_cols=567 Identities=35% Similarity=0.623 Sum_probs=459.5
Q ss_pred hHHhHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 478 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRH 557 (1075)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1075)
++.-+++..++..++...+++....+.+.+++|++..++.+.|.....+..++...|.+.++-+++.++..++++...++
T Consensus 100 ~l~~L~Kilip~vfc~e~gll~~hs~~Li~RTfLSl~VA~LdGqlVk~Ivrk~~r~F~~~LlkW~liaiPAtFvNS~Iry 179 (728)
T KOG0064|consen 100 RLNVLSKILIPTVFCKETGLLTAQSFFLISRTFLSLFVAKLDGQLVKNIVRKRGRQFLWDLLKWFLIAIPASFVNSAIRY 179 (728)
T ss_pred HHHHHHHHhcchHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence 45556778888888877888888888889999999999999999888888888888877777777888888888889999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHhh
Q 001446 558 LTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALT 637 (1075)
Q Consensus 558 ~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~~~~~~~~~l~~~~ 637 (1075)
+...+++.+|.++.+|+.+.||.+..||++.|..+..-|+||++++|+..+.+..+.+...+..+++.++.++..|.-..
T Consensus 180 le~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~ 259 (728)
T KOG0064|consen 180 LESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSA 259 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988887775443
Q ss_pred chh---hHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 001446 638 GQR---GVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEH 714 (1075)
Q Consensus 638 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~ 714 (1075)
... +..++...+.+...+++.++|+|+++..++.+.++.+|+.|.++.++.|.||+|+|.++|.......|..+.+.
T Consensus 260 ~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~q 339 (728)
T KOG0064|consen 260 TSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQ 339 (728)
T ss_pred ccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 322 23344555566677899999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhhhHHHHHhhchhhHHHHH-HHH--HHHhhcccc-----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 715 SLLLLKKKWLFGILDDFVTKQLPHNVTWGL-SLL--YAMEHKGDR-----ALVSTQGELAHALRFLASVVSQSFLAFGDI 786 (1075)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~-----~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~ 786 (1075)
.....+.+.|+.++..|+............ ++. .+....... ..++...++..+-+. +.....++..+
T Consensus 340 m~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~L----L~saAdAieRl 415 (728)
T KOG0064|consen 340 MNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRL----LLSAADAIERL 415 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHH----HHHHHHHHHHH
Confidence 777778888888888887755432211100 000 000000000 011111122222211 22345577888
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcc-------------cCCccCcCCC---CCCCCceEEeeeeeeCCCcc
Q 001446 787 LELHRKFVELSGGINRIFELEELLDAAQPGDDEI-------------SGSSQHKWNS---TDYQDSISFSKLDIITPSQK 850 (1075)
Q Consensus 787 ~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~-------------~~~~~~~w~~---~~~~g~I~f~~V~~~yp~~~ 850 (1075)
+..+.+++++.+...|+.++.+...+........ +.....+.|. ......|.++||..-.|+..
T Consensus 416 MssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~ 495 (728)
T KOG0064|consen 416 MSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAGD 495 (728)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCcc
Confidence 8999999999999999998766555433221100 0000000000 01234599999999999988
Q ss_pred ccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEcCCCCCCCcchhhhhc
Q 001446 851 LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQII 930 (1075)
Q Consensus 851 ~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~VpQdP~Lf~gTir~NL~ 930 (1075)
.|...+||.|+||..+.|.||+|||||||++.|.|+||...|...++-. .+|.||||.||+--||+||++.
T Consensus 496 vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~---------~~mFYIPQRPYms~gtlRDQII 566 (728)
T KOG0064|consen 496 VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRP---------NNIFYIPQRPYMSGGTLRDQII 566 (728)
T ss_pred eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCC---------cceEeccCCCccCcCcccceee
Confidence 8999999999999999999999999999999999999999999987754 5699999999999999999999
Q ss_pred CCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCChhHHHHHHHHHHhhcC
Q 001446 931 YPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHK 1010 (1075)
Q Consensus 931 ~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~ 1010 (1075)
||++.++-. .....|.++..+|.-|+|.++.++. +|+|...+|-+.||||||||+++||.+.++
T Consensus 567 YPdS~e~~~---------------~kg~~d~dL~~iL~~v~L~~i~qr~-~g~da~~dWkd~LsgGekQR~~mARm~yHr 630 (728)
T KOG0064|consen 567 YPDSSEQMK---------------RKGYTDQDLEAILDIVHLEHILQRE-GGWDAVRDWKDVLSGGEKQRMGMARMFYHR 630 (728)
T ss_pred cCCcHHHHH---------------hcCCCHHHHHHHHHHhhHHHHHHhc-cChhhhccHHhhccchHHHHHHHHHHHhcC
Confidence 998765421 1246789999999999999888875 889999999999999999999999999999
Q ss_pred CCEeEeeccCCCCCHHHHHHHHHHHHhcCceEEEecCCCCchhhccceEEEEcCCcceEEecCC
Q 001446 1011 PKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTIS 1074 (1075)
Q Consensus 1011 p~ILiLDEATSalD~~~e~~i~~~~~~~~~TvI~IaHRls~i~~~~~~l~l~~g~g~~~~~~~~ 1074 (1075)
|+..+|||||||+..|.|..|.+.++..|.+.|+|+||.++++||.+.|.+ ||+|+|.+.+..
T Consensus 631 PkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk~h~~ll~~-dg~g~~q~~~ln 693 (728)
T KOG0064|consen 631 PKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKYHTHLLEF-DGEGGWQFRALN 693 (728)
T ss_pred cchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHHHHHHHHHhc-cCCCCeeeccCC
Confidence 999999999999999999999999988999999999999999999999999 999999997653
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-63 Score=596.75 Aligned_cols=198 Identities=26% Similarity=0.378 Sum_probs=162.8
Q ss_pred cEEEEeEEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC-----CccEEEeCCcCc------
Q 001446 181 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS------ 246 (1075)
Q Consensus 181 ~i~~~~v~~~~~~---~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~------ 246 (1075)
.++++|+++.|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 6899999999963 25799999999999999999999999999999999999986 799999998641
Q ss_pred c---cc-ccEEEEcCCCC--CC-cCCHHHHhcCCCCC-CcccCcCCHHHHHHHHHHcCChh---HHhcCCCCcccCCCCC
Q 001446 247 D---LN-KEIFYVPQRPY--TA-VGTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDE 315 (1075)
Q Consensus 247 ~---~~-~~i~~v~Q~~~--~~-~~tv~~ni~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~~~~g~~ 315 (1075)
. .+ ++++|+||+|. ++ ..|+++|+.++... .........+++.++++.++|.+ ..++.+ .+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~--------~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYP--------HQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCC--------cc
Confidence 1 12 47999999985 33 35899998643211 01111112356778999999975 346655 68
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 316 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 316 LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|||||||||+|||||+.+|++|||||||++||+.+...+.+.+++ .|+|+|+||||++.+. .||+|++|++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~ 232 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQN 232 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEEC
Confidence 999999999999999999999999999999999999999887764 3899999999999875 7999999985
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-63 Score=594.58 Aligned_cols=196 Identities=26% Similarity=0.320 Sum_probs=162.2
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCC--CCCccEEEeCC----------------
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPG---------------- 243 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~--~~~~G~i~~~~---------------- 243 (1075)
|+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.+++
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 46899999995 468999999999999999999999999999999999997 79999999862
Q ss_pred -------cC----------------ccccccEEEEcCC-CCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCCh
Q 001446 244 -------VG----------------SDLNKEIFYVPQR-PYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 298 (1075)
Q Consensus 244 -------~~----------------~~~~~~i~~v~Q~-~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 298 (1075)
.+ ..+++.++|+||+ +.++. .|++||+.++............+++.++++.+++.
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 10 0124569999998 45554 59999998753211111111234677899999998
Q ss_pred hHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhh
Q 001446 299 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPAL 374 (1075)
Q Consensus 299 ~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~ 374 (1075)
+..++.+ .+|||||||||+|||||+.+|++|||||||++||+.+..++.+.+++ .|+|||+||||++.
T Consensus 160 ~~~~~~~--------~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~ 231 (520)
T TIGR03269 160 HRITHIA--------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231 (520)
T ss_pred hhhhcCc--------ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 8888766 68999999999999999999999999999999999999998776643 48899999999998
Q ss_pred Hh-hCCeEEEEcC
Q 001446 375 VA-FHDVVLSLDG 386 (1075)
Q Consensus 375 ~~-~~d~i~~l~~ 386 (1075)
+. .||++++|++
T Consensus 232 ~~~~~d~i~~l~~ 244 (520)
T TIGR03269 232 IEDLSDKAIWLEN 244 (520)
T ss_pred HHHhcCEEEEEeC
Confidence 75 6999999975
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-63 Score=589.16 Aligned_cols=197 Identities=21% Similarity=0.311 Sum_probs=166.6
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc-------cccccEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------~~~~~i~ 253 (1075)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.++
T Consensus 4 ~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 4 YLSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred eEEEeeeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 689999999996 46799999999999999999999999999999999999999999999998541 1356799
Q ss_pred EEcCCCCCCc-CCHHHHhcCCCCCC--cc-cCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHH
Q 001446 254 YVPQRPYTAV-GTLRDQLIYPLTSD--QE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 329 (1075)
Q Consensus 254 ~v~Q~~~~~~-~tv~~ni~~~~~~~--~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAra 329 (1075)
|+||++.++. .|+++|+.++.... .. ......+++.++++.+++.+..++.+ .+||||||||++||||
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~qrv~lara 154 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL--------KYLSIGQRQMVEIAKA 154 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch--------hhCCHHHHHHHHHHHH
Confidence 9999998766 49999999864211 10 01112346778899999976666555 6899999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 330 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 330 l~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|+||||++.+. .||++++|++
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKD 215 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999887764 4899999999999874 6999999985
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-62 Score=587.10 Aligned_cols=196 Identities=23% Similarity=0.328 Sum_probs=162.8
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC--CccEEEeCCcCc-------cccccE
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL--VSGHIAKPGVGS-------DLNKEI 252 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~--~~G~i~~~~~~~-------~~~~~i 252 (1075)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+. ..++.+
T Consensus 2 l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 2 LEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEEEeEEEEeC-CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 78999999995 46799999999999999999999999999999999999987 799999998541 123579
Q ss_pred EEEcCCCCCCc-CCHHHHhcCCCCCCc----ccCcCCHHHHHHHHHHcCChhHH-hcCCCCcccCCCCCCChhHHHHHHH
Q 001446 253 FYVPQRPYTAV-GTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLL-DRYPPEKEINWGDELSLGEQQRLGM 326 (1075)
Q Consensus 253 ~~v~Q~~~~~~-~tv~~ni~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~g~~LSgGqkqRl~l 326 (1075)
+||||++.++. .|++||+.++..... .......+++.++++.+++.+.. ++.+ .+|||||||||+|
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~~qrv~i 152 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV--------GDYGGGQQQLVEI 152 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch--------hhCCHHHHHHHHH
Confidence 99999987665 599999987643210 00111234567889999987644 3333 6899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 327 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 327 Aral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
||||+.+|+++||||||++||+.+...+.+.+++ .|+|+|+||||++.+. .||++++|++
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~ 216 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRD 216 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999887654 5889999999999875 6999999975
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-61 Score=596.76 Aligned_cols=459 Identities=20% Similarity=0.234 Sum_probs=319.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHHHH---
Q 001446 550 FIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDI--- 626 (1075)
Q Consensus 550 ~~~~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~~~--- 626 (1075)
+..+...++..++..++|..+++++++. +..||+ ....+++.+|+++|++.+...+...+..++..++.+
T Consensus 220 l~~~~~~~~~~~~~~~lr~~l~~~ll~~---~~~~f~----~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~ 292 (711)
T TIGR00958 220 LRGGSFNYTMARINLRIREDLFRSLLRQ---DLGFFD----ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGL 292 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHc----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666666777777766653 234554 234577899999999999877765554444433332
Q ss_pred ----HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHH
Q 001446 627 ----LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKA 702 (1075)
Q Consensus 627 ----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~ 702 (1075)
++++|.++++. + +..++...+.....+.......+.++..+.+.....+...+.++|+.|++++.+.+
T Consensus 293 ~~~l~~~s~~l~l~~-------l-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~ 364 (711)
T TIGR00958 293 LGFMLWLSPRLTMVT-------L-INLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEAS 364 (711)
T ss_pred HHHHHHHhHHHHHHH-------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHH
Confidence 33444443321 1 11111112222233333444445455555555556666678899999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 001446 703 MIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLA 782 (1075)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~ 782 (1075)
.+.+..++..+...+.............++. .+...+.++++........ .+.|.+..+ ..+......+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~il~~g~~lv~~g~--it~G~lva~----~~~~~~l~~~ 433 (711)
T TIGR00958 365 RFKEALEETLQLNKRKALAYAGYLWTTSVLG-----MLIQVLVLYYGGQLVLTGK--VSSGNLVSF----LLYQEQLGEA 433 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCC--CCHHHHHHH----HHHHHHHHHH
Confidence 7777666665544332221111111111111 0111111222211110000 112333222 2234456667
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCC--ccccccccceee
Q 001446 783 FGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS--QKLLARQLTFEI 860 (1075)
Q Consensus 783 ~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~--~~~vL~~vs~~I 860 (1075)
+..+...+..+.+..++.+|+.++.+.+++.++. .. ..+++ ..|.|+|+||+|+||+ ++++|+|+||+|
T Consensus 434 l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-----~~-~~~~~---~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i 504 (711)
T TIGR00958 434 VRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT-----GT-LAPLN---LEGLIEFQDVSFSYPNRPDVPVLKGLTFTL 504 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-----CC-CCCCC---CCCeEEEEEEEEECCCCCCCccccCceEEE
Confidence 8888888888999999999999998654322111 00 01112 2578999999999986 358999999999
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHH
Q 001446 861 VPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEA 938 (1075)
Q Consensus 861 ~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~ 938 (1075)
+|||++|||||||||||||+++|+|+|+|++|+|.+||+|++++ +.+|++|++|||||++|+|||||||.|+...
T Consensus 505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~--- 581 (711)
T TIGR00958 505 HPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD--- 581 (711)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCC---
Confidence 99999999999999999999999999999999999999999987 4577889999999999999999999986431
Q ss_pred HHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEee
Q 001446 939 ELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILD 1017 (1075)
Q Consensus 939 ~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLD 1017 (1075)
..|++++++++.++++++++++|+|+||.+ ++|.+||||||||||||||++|+|+|||||
T Consensus 582 -------------------~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILD 642 (711)
T TIGR00958 582 -------------------TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILD 642 (711)
T ss_pred -------------------CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 235667778888888889999999999986 578999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1018 ECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1018 EATSalD~~~e~~i~~~~~~~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
||||+||.++|+.+++.....++|+|+||||+++++.+|++++|++|.
T Consensus 643 EpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ 690 (711)
T TIGR00958 643 EATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGS 690 (711)
T ss_pred ccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCEEEEEECCE
Confidence 999999999999998843336899999999999999999999998765
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-61 Score=579.76 Aligned_cols=192 Identities=21% Similarity=0.262 Sum_probs=162.4
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCccccccEEEEcCCCC
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 260 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~ 260 (1075)
+|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+++|++|++.
T Consensus 1 ml~i~~ls~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----~~i~~~~q~~~ 74 (530)
T PRK15064 1 MLSTANITMQFG-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----ERLGKLRQDQF 74 (530)
T ss_pred CEEEEEEEEEeC-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----CEEEEEeccCC
Confidence 378999999996 468999999999999999999999999999999999999999999999873 46999999987
Q ss_pred CCc-CCHHHHhcCCCCC-------------Cccc-------------------CcCCHHHHHHHHHHcCChhHHh-cCCC
Q 001446 261 TAV-GTLRDQLIYPLTS-------------DQEV-------------------EPLTHGGMVELLKNVDLEYLLD-RYPP 306 (1075)
Q Consensus 261 ~~~-~tv~~ni~~~~~~-------------~~~~-------------------~~~~~~~~~~~l~~~~l~~~~~-~~~~ 306 (1075)
++. .|++||+.++... .... ......++.++++.+++.+... +.+
T Consensus 75 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~- 153 (530)
T PRK15064 75 AFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLM- 153 (530)
T ss_pred cCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCch-
Confidence 665 4999999865310 0000 0011245677888899876443 333
Q ss_pred CcccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChhhHh-hCCeEEEEc
Q 001446 307 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLD 385 (1075)
Q Consensus 307 ~~~~~~g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~t~i~vtH~~~~~~-~~d~i~~l~ 385 (1075)
.+||||||||++|||||+.+|++|||||||++||+.+..++.+.+++.+.|||+||||++.+. .||++++|+
T Consensus 154 -------~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~ 226 (530)
T PRK15064 154 -------SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLD 226 (530)
T ss_pred -------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEe
Confidence 689999999999999999999999999999999999999999999888999999999999875 699999998
Q ss_pred C
Q 001446 386 G 386 (1075)
Q Consensus 386 ~ 386 (1075)
+
T Consensus 227 ~ 227 (530)
T PRK15064 227 Y 227 (530)
T ss_pred C
Confidence 6
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-61 Score=584.72 Aligned_cols=459 Identities=18% Similarity=0.214 Sum_probs=306.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHH-------H
Q 001446 553 PSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSV-------D 625 (1075)
Q Consensus 553 ~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~-------~ 625 (1075)
+....+..++..+.|..+++++++. +..+|+ ....+++.+|+++|++.+...+...+..++..++ .
T Consensus 85 ~~~~~~~~~~~~~lr~~~~~~ll~~---~~~~~~----~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~ 157 (588)
T PRK11174 85 RVGFKAGQHIRQQIRQQVLDKLQQL---GPAWIQ----GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIA 157 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---Cchhhc----cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555556666666666653 234444 2345678899999999998776554444333222 2
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHHH
Q 001446 626 ILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIE 705 (1075)
Q Consensus 626 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~ 705 (1075)
+++++|.++++. +++. ++.........+.......+.++..+.+.....+...+.++|+.|++++.+.+.+.
T Consensus 158 l~~~~~~l~l~~-------l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~ 229 (588)
T PRK11174 158 VFPINWAAGLIL-------LGTA-PLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIR 229 (588)
T ss_pred HHHHHHHHHHHH-------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHH
Confidence 234556554432 1111 11111111111222222223233333344444555667889999999988877777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHH----HHHHHHH-HHHHHHHH
Q 001446 706 SRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGEL----AHALRFL-ASVVSQSF 780 (1075)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~l~~~-~~~~~~~~ 780 (1075)
+..++..+...+..+..........++....... +..+.+....+. .+.|.+ .....++ .......+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~----~t~G~l~~~~~~~~~~~~~~l~~~~~ 301 (588)
T PRK11174 230 SASEDFRQRTMEVLRMAFLSSAVLEFFASISIAL----VAVYFGFSYLGE----LNFGHYGTGVTLFAGFFVLILAPEFY 301 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcc----cccccccccchHHHHHHHHHHhHHHH
Confidence 6666665544333322222222211111110000 101111111111 011211 1111111 12334456
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCCccccccccceee
Q 001446 781 LAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEI 860 (1075)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~~vL~~vs~~I 860 (1075)
.++..+......+..+..+.+|+.++.+.+++.+.. ...+ -+. ...+.|+|+||+|+|++++++|+|+||+|
T Consensus 302 ~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-----~~~~--~~~-~~~~~i~~~~vsf~~~~~~~vL~~i~l~i 373 (588)
T PRK11174 302 QPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQ-----GEKE--LAS-NDPVTIEAEDLEILSPDGKTLAGPLNFTL 373 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC-----Cccc--cCC-CCCceEEEEeeEEeccCCCeeeeeeEEEE
Confidence 678888888888888999999999998653221110 0000 010 11457999999986666678999999999
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHH
Q 001446 861 VPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEA 938 (1075)
Q Consensus 861 ~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~ 938 (1075)
+|||++|||||||||||||+++|.|+| |++|+|.+||+|++++ ..+|++|+||||||+||+|||||||.|+..
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~---- 448 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP---- 448 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC----
Confidence 999999999999999999999999999 8999999999999988 357888999999999999999999998532
Q ss_pred HHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEee
Q 001446 939 ELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILD 1017 (1075)
Q Consensus 939 ~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLD 1017 (1075)
+.+|++++++++.++++++++++|+||||.+ ++|.+||||||||||||||++++|+|||||
T Consensus 449 ------------------~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLD 510 (588)
T PRK11174 449 ------------------DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLD 510 (588)
T ss_pred ------------------CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 1345667777888888888999999999986 678999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1018 ECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1018 EATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
|||||||.++|+.+++.+++ +++|+|+||||+++++.+|+++++++|.
T Consensus 511 E~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~ 560 (588)
T PRK11174 511 EPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQ 560 (588)
T ss_pred CCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCe
Confidence 99999999999999887754 5899999999999999999999998774
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-61 Score=581.24 Aligned_cols=460 Identities=22% Similarity=0.259 Sum_probs=305.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhh-------
Q 001446 548 SSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMV------- 620 (1075)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i------- 620 (1075)
..+..+...+.........|..+++++++. +..+|+ ....+++.+|+++|++.+...+......+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~---~~~~~~----~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~ 141 (567)
T COG1132 69 RALQSYLGSRLGQKIVADLRRDLFEKLLRL---PLSFFD----KAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLI 141 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CHHHhC----cCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333334444445566666677777776653 224444 223577889999999998877766422222
Q ss_pred HhHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHH
Q 001446 621 KPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGARE 700 (1075)
Q Consensus 621 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e 700 (1075)
..++.+++..|+++++.. +..+++.+...++.. +..+.....++..+.+.....+...+.+.++.|+.++.+
T Consensus 142 ~~~~~~~~~~~~l~l~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~ 213 (567)
T COG1132 142 GSLVLLFSLSWRLALILL-----LILPLLALVLSLLAR---KSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRE 213 (567)
T ss_pred HHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHH
Confidence 112222344565554421 111111111111111 111222222222233333334444567789999988777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHH
Q 001446 701 KAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSF 780 (1075)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ 780 (1075)
.+.+.....+.................+..++. .+...+.++++........ .+.|.+... ..+.....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~g~~~~~----~~~~~~~~ 282 (567)
T COG1132 214 LKRFEEANEELRRANLRASRLEALLAPLMLLLS-----SLGTVLVLALGGFLVLSGS--LTVGALAAF----ILYLLRLL 282 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCC--CCHhHHHHH----HHHHHHHH
Confidence 666555555444443222211111111111111 1111222222221100000 112333222 23344555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCCccccccccceee
Q 001446 781 LAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEI 860 (1075)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~~vL~~vs~~I 860 (1075)
.++..+......+.....+.+|++++.+.++...+.+. . .....|+|+|+||+|+||+++++|+|+||+|
T Consensus 283 ~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~-------~---~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i 352 (567)
T COG1132 283 TPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD-------P---LKDTIGSIEFENVSFSYPGKKPVLKDISFSI 352 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC-------C---CCCCCCeEEEEEEEEEcCCCCccccCceEEE
Confidence 67778888888888888999999999875332221110 0 1123578999999999998889999999999
Q ss_pred cCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHH
Q 001446 861 VPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEA 938 (1075)
Q Consensus 861 ~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~ 938 (1075)
+|||+|||||||||||||++++|+|||||++|+|.+||+||+++ +.+|.+|++|||||+||+||||+||.|+...
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~--- 429 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPD--- 429 (567)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCC---
Confidence 99999999999999999999999999999999999999999998 5678999999999999999999999986431
Q ss_pred HHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEee
Q 001446 939 ELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILD 1017 (1075)
Q Consensus 939 ~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLD 1017 (1075)
.+|++++++++.+++.++++++|+||||.+ ++|.+||||||||||||||++|+|||||||
T Consensus 430 -------------------at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILD 490 (567)
T COG1132 430 -------------------ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILD 490 (567)
T ss_pred -------------------CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 124445555555566667777889999987 478999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1018 ECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1018 EATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
||||+||.++|..|++.++. .++|+|+||||+++++..|+++++++|.
T Consensus 491 EaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~ 540 (567)
T COG1132 491 EATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGR 540 (567)
T ss_pred ccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCE
Confidence 99999999999999988753 5889999999999999999999998876
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-60 Score=575.03 Aligned_cols=439 Identities=19% Similarity=0.139 Sum_probs=290.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHHHH-------HHHH
Q 001446 558 LTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDI-------LWFT 630 (1075)
Q Consensus 558 ~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~~~-------~~~~ 630 (1075)
+..+...+.|..+++++++. +..||+ ....++..+|+++|++.+...+...+..++..++.+ ++++
T Consensus 80 ~~~~~~~~lr~~~~~~ll~~---~~~~~~----~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (529)
T TIGR02868 80 AALRSLGRLRVRVYDRLARL---ALAGRR----RFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLS 152 (529)
T ss_pred HHHHHHHHHHHHHHHHhhcc---Cccccc----cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455566666665542 234554 234577889999999999887766554444333322 3345
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHHHHHHHH
Q 001446 631 WRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRE 710 (1075)
Q Consensus 631 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~ 710 (1075)
|.++++. ++..+++.........+.......+.++..+.+.....+...+.++|+.|+.++.+.+.+.+..++
T Consensus 153 ~~l~l~~-------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~ 225 (529)
T TIGR02868 153 VPAALVL-------AAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRE 225 (529)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHH
Confidence 5544332 111111111110111111112222233333444455556666789999999988887777666555
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 711 LLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELH 790 (1075)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~ 790 (1075)
..+...+......+......++. .+...+.++++........ .+.|.+... ..+......++..+....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~g~--~t~g~l~~~----~~~~~~~~~~~~~l~~~~ 294 (529)
T TIGR02868 226 LLAAERRAARATGLGAAAQLLAA-----GLAVLGALWAGGPAVADGT--LAPATLAVL----VLLPLAAFEAFAPLPAAA 294 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCCC--CChhHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 55443332222211111111111 1111122222221100000 112222222 222334455677777777
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCCccccccccceeecCCCeEEEEc
Q 001446 791 RKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTG 870 (1075)
Q Consensus 791 ~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG 870 (1075)
..+.....+.+|+.++.+.+++.+.... ......++ ..+.|+|+||+|+||+++++|+|+||+|+|||++||||
T Consensus 295 ~~~~~~~~~~~ri~~~l~~~~~~~~~~~---~~~~~~~~---~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG 368 (529)
T TIGR02868 295 QALTRVRAAAERIEEVTGAKGPRPEGVV---PAAGALGL---GKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILG 368 (529)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcCCCCC---CCCcccCC---CCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEEC
Confidence 8888888999999998865432211100 00001112 24679999999999877789999999999999999999
Q ss_pred CCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc-cCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCC
Q 001446 871 PNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKG 949 (1075)
Q Consensus 871 ~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~-~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~ 949 (1075)
|||||||||+++|+|+|+|++|+|.+||+|++++ +.+|++|+||||||+||+|||||||.|+.+.
T Consensus 369 ~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~-------------- 434 (529)
T TIGR02868 369 PSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPD-------------- 434 (529)
T ss_pred CCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCC--------------
Confidence 9999999999999999999999999999999987 3467889999999999999999999985421
Q ss_pred cccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHH
Q 001446 950 EKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVE 1028 (1075)
Q Consensus 950 ~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e 1028 (1075)
.+|++++++++.+++++++.++|+||||.+ ++|.+||||||||||||||++++|+||||||||||||.++|
T Consensus 435 --------~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te 506 (529)
T TIGR02868 435 --------ATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTE 506 (529)
T ss_pred --------CCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 235667778888888889999999999986 67899999999999999999999999999999999999999
Q ss_pred HHHHHHHHh--cCceEEEecCCC
Q 001446 1029 EQLYRLAKD--MGITFVTSSQRP 1049 (1075)
Q Consensus 1029 ~~i~~~~~~--~~~TvI~IaHRl 1049 (1075)
+.|++.+.+ .++|+|+||||+
T Consensus 507 ~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 507 SELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHhcCCCEEEEEecCC
Confidence 999988764 589999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-62 Score=516.86 Aligned_cols=199 Identities=27% Similarity=0.381 Sum_probs=163.5
Q ss_pred ccEEEEeEEEEcC---CCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC-----CccEEEeCCcC------
Q 001446 180 NYIEFSGVKVVTP---TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG------ 245 (1075)
Q Consensus 180 ~~i~~~~v~~~~~---~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~-----~~G~i~~~~~~------ 245 (1075)
..++++|+++.+. +...+++++||++++||.++|||+||||||-..+.++|+++. -+|+|.++|.+
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 4688999998764 235799999999999999999999999999999999999975 47899999975
Q ss_pred cc---cc-ccEEEEcCCCCC---CcCCHHHHhcCCCCCCc-ccCcCCHHHHHHHHHHcCChh---HHhcCCCCcccCCCC
Q 001446 246 SD---LN-KEIFYVPQRPYT---AVGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGD 314 (1075)
Q Consensus 246 ~~---~~-~~i~~v~Q~~~~---~~~tv~~ni~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~~~~g~ 314 (1075)
.. +| .+|+++||+|.. +.-||..+|.-+..... .......+++.++|+.+|+.+ .++.+| +
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP--------H 156 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP--------H 156 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC--------c
Confidence 11 22 479999999963 22477777754332211 112334567889999999965 466777 7
Q ss_pred CCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 315 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 315 ~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
+|||||||||.||.||+.+|++||.||||.|||.....+|++.+++ .|..+++||||+..++ .+|+|++|..
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~ 233 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQH 233 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEec
Confidence 9999999999999999999999999999999999999999888764 5999999999999986 6999999975
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=578.40 Aligned_cols=194 Identities=22% Similarity=0.375 Sum_probs=167.5
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc------c-ccccE
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEI 252 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~-~~~~i 252 (1075)
..++++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+. . .++.+
T Consensus 10 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 10 PLLCARSISKQYS-GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred ceEEEEeEEEEeC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 3699999999996 46799999999999999999999999999999999999999999999998531 1 12469
Q ss_pred EEEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 253 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 253 ~~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
+|+||++.++. .|++||+.++... .....+++.++++.+++.+..++.+ .+|||||||||+|||||+
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSA--------GSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCCh--------hhCCHHHHHHHHHHHHHH
Confidence 99999998766 4999999986432 1122356778999999987777665 689999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
.+|++|||||||++||+.+...+.+.+++ .|+|+|++|||++.+ ..||++++|++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRD 215 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999887754 489999999999987 47999999985
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-60 Score=574.66 Aligned_cols=193 Identities=21% Similarity=0.331 Sum_probs=162.2
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCccccccEEEEcCCC
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 259 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~ 259 (1075)
..|+++|+++.|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|+||||+|
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----~~~i~~v~Q~~ 79 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----GIKVGYLPQEP 79 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----CCEEEEEecCC
Confidence 3699999999996357899999999999999999999999999999999999999999999875 24799999999
Q ss_pred CCCc-CCHHHHhcCCCCCC--------------cccC----------------------cCCHHHHHHHHHHcCChhHHh
Q 001446 260 YTAV-GTLRDQLIYPLTSD--------------QEVE----------------------PLTHGGMVELLKNVDLEYLLD 302 (1075)
Q Consensus 260 ~~~~-~tv~~ni~~~~~~~--------------~~~~----------------------~~~~~~~~~~l~~~~l~~~~~ 302 (1075)
.+++ .|++||+.++.... .... .....++.++++.+++.. .+
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~ 158 (556)
T PRK11819 80 QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WD 158 (556)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-cc
Confidence 8776 49999998753100 0000 001234566777777753 34
Q ss_pred cCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChhhHh-hCCeE
Q 001446 303 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVV 381 (1075)
Q Consensus 303 ~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~t~i~vtH~~~~~~-~~d~i 381 (1075)
+.+ .+|||||||||+|||||+.+|+++||||||++||+.+..++.+.+++.+.|+|+||||++.+. .||+|
T Consensus 159 ~~~--------~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i 230 (556)
T PRK11819 159 AKV--------TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWI 230 (556)
T ss_pred Cch--------hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeE
Confidence 433 689999999999999999999999999999999999999999999887789999999999885 68999
Q ss_pred EEEcC
Q 001446 382 LSLDG 386 (1075)
Q Consensus 382 ~~l~~ 386 (1075)
++|++
T Consensus 231 ~~l~~ 235 (556)
T PRK11819 231 LELDR 235 (556)
T ss_pred EEEeC
Confidence 99985
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=577.88 Aligned_cols=194 Identities=24% Similarity=0.301 Sum_probs=162.0
Q ss_pred EEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc-------cccccEEEEc
Q 001446 184 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIFYVP 256 (1075)
Q Consensus 184 ~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------~~~~~i~~v~ 256 (1075)
++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|+|
T Consensus 1 ~~nl~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeC-CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 368899885 46799999999999999999999999999999999999999999999998641 1246799999
Q ss_pred CCCCCCc-CCHHHHhcCCCCCC-cc--cCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcC
Q 001446 257 QRPYTAV-GTLRDQLIYPLTSD-QE--VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 332 (1075)
Q Consensus 257 Q~~~~~~-~tv~~ni~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~ 332 (1075)
|++.++. .|++||+.++.... .. ......+++.++++.+++.+..++.+ .+|||||||||+|||||+.
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV--------ATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch--------hhCCHHHHHHHHHHHHHHh
Confidence 9997654 59999998764211 10 01111245677888999877666655 6899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 333 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 333 ~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
+|++|||||||++||+.+...+.+.+++ .|+|+|++|||++.+. .||++++|++
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~ 209 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRD 209 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999887754 5899999999999875 6999999985
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-60 Score=522.11 Aligned_cols=207 Identities=27% Similarity=0.362 Sum_probs=187.3
Q ss_pred CCceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcE
Q 001446 834 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGI 911 (1075)
Q Consensus 834 ~g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i 911 (1075)
.|.|+|+||+|+|++.++||+|+||+|++||||||||+|||||||++++|+||+| .+|+|+|||+||+.+ +.+|+-|
T Consensus 349 ~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred CCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhe
Confidence 5789999999999988889999999999999999999999999999999999999 999999999999998 4578889
Q ss_pred EEEcCCCCCCCcchhhhhcCCCC--hHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-c
Q 001446 912 FYVPQRPYTCLGTLRDQIIYPLS--REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-N 988 (1075)
Q Consensus 912 ~~VpQdP~Lf~gTir~NL~~p~~--~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~ 988 (1075)
++||||..||++||-+||.|+.. +++++.++| +..++++.+.++|+||+|.+ +
T Consensus 428 g~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~------------------------k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 428 GVVPQDSVLFNDTILYNIKYGNPSASDEEVVEAC------------------------KRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred eEeCCcccccchhHHHHhhcCCCCcCHHHHHHHH------------------------HHcCcHHHHHhccccchhhHhh
Confidence 99999999999999999999653 344444555 45555666777889999976 6
Q ss_pred cccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 989 WEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 989 ~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
.|..||||||||++||||+|++|+|++||||||+||.+||+.|.+.+.. .++|+|.|+||+++.+.+|+++.+++|.
T Consensus 484 rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~ 562 (591)
T KOG0057|consen 484 RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGT 562 (591)
T ss_pred cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCe
Confidence 7889999999999999999999999999999999999999998887654 6999999999999999999999998775
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-61 Score=575.56 Aligned_cols=189 Identities=22% Similarity=0.252 Sum_probs=162.0
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 254 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 254 (1075)
+|+++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.+ ...++.++|
T Consensus 3 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLS-DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcC-CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 589999999996 4569999999999999999999999999999999999999999999998753 122356999
Q ss_pred EcCCCCCC---------cCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHH
Q 001446 255 VPQRPYTA---------VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 325 (1075)
Q Consensus 255 v~Q~~~~~---------~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~ 325 (1075)
++|++... ..|+++|+.++. ...+++.++++.+++.+..++.+ .+||||||||++
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~ 145 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV--------KDPARCEQLAQQFGITALLDRRF--------KYLSTGETRKTL 145 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch--------hHHHHHHHHHHHcCCHhhhhCCc--------ccCCHHHHHHHH
Confidence 99987531 347888875431 12456788999999988887766 689999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 326 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 326 lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|||||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~ 210 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLAD 210 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEEC
Confidence 99999999999999999999999999999888764 3889999999998874 6999999975
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-60 Score=571.60 Aligned_cols=201 Identities=22% Similarity=0.340 Sum_probs=156.9
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCccccccEEEEcCCCC
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 260 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~ 260 (1075)
.++++|+++.|++++++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ +..|+||||+|+
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----~~~i~~v~Q~~~ 78 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----GIKVGYLPQEPQ 78 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----CCEEEEEeccCC
Confidence 689999999996456899999999999999999999999999999999999999999999875 247999999998
Q ss_pred CCc-CCHHHHhcCCCCCC--------------cccCcC------CHHHHHHHHHHcCChhH-------HhcCCCCcccCC
Q 001446 261 TAV-GTLRDQLIYPLTSD--------------QEVEPL------THGGMVELLKNVDLEYL-------LDRYPPEKEINW 312 (1075)
Q Consensus 261 ~~~-~tv~~ni~~~~~~~--------------~~~~~~------~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~~ 312 (1075)
++. .|++||+.++.... ...... ...++.+.++.++.++. ++..........
T Consensus 79 ~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 158 (552)
T TIGR03719 79 LDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDAD 158 (552)
T ss_pred CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCc
Confidence 765 59999998753210 000000 01123333333332211 111100000112
Q ss_pred CCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 313 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 313 g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
..+||||||||++|||||+.+|+++||||||++||+.+..++.+.+++.+.|+|+|||+++.+. .||+++++++
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~ 233 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDR 233 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEEC
Confidence 3689999999999999999999999999999999999999999999887789999999999886 6899999985
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=584.01 Aligned_cols=452 Identities=17% Similarity=0.175 Sum_probs=308.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhH-------HHH
Q 001446 554 SIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPS-------VDI 626 (1075)
Q Consensus 554 ~~~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~-------~~~ 626 (1075)
....+..++...+|..+++++++. +..||+ ....++..+|++ |++.+...+...+..++..+ +.+
T Consensus 199 ~~~~~~~~~~~~l~~~~~~~ll~~---~~~~~~----~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l 270 (686)
T TIGR03797 199 AVLRLETRMDASLQAAVWDRLLRL---PVSFFR----QYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLM 270 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC---CHHHHC----CCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555566666665542 223443 234467788986 67777666554433322222 222
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHHHH
Q 001446 627 LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIES 706 (1075)
Q Consensus 627 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~~ 706 (1075)
++++|.++++.. +++.+++ .+.....+.......+..+..+.......+...+.++++.++.+......+.+
T Consensus 271 ~~~~~~l~li~l----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~ 342 (686)
T TIGR03797 271 FYYSWKLALVAV----ALALVAI----AVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAK 342 (686)
T ss_pred HHHHHHHHHHHH----HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHH
Confidence 344454443321 1111111 11111222223333333444444445555666678999999998887777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 707 RFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDI 786 (1075)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~ 786 (1075)
.+.+..+...+......+...+..++.. +...+.++++........ .+.|.+.. +.........++..+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~il~~g~~lv~~g~--ltiG~lva----~~~l~~~~~~pl~~l 411 (686)
T TIGR03797 343 LFSRQRKLELSAQRIENLLTVFNAVLPV-----LTSAALFAAAISLLGGAG--LSLGSFLA----FNTAFGSFSGAVTQL 411 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCC--CCHHHHHH----HHHHHHHHHHHHHHH
Confidence 7766666554443333222222222211 111112222211110000 11233222 222344556778888
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCC-ccccccccceeecCCCe
Q 001446 787 LELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTFEIVPGKS 865 (1075)
Q Consensus 787 ~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL~~vs~~I~~Ge~ 865 (1075)
......+..+..+.+|+.++.+.+++.+.. .. . + ....|.|+|+||+|+||+ ++++|+|+||+|+|||+
T Consensus 412 ~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-----~~--~--~-~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~ 481 (686)
T TIGR03797 412 SNTLISILAVIPLWERAKPILEALPEVDEA-----KT--D--P-GKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEF 481 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccC-----cC--C--C-CCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCE
Confidence 888889999999999999987643321110 00 0 1 112578999999999974 57899999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHh
Q 001446 866 LLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRAL 943 (1075)
Q Consensus 866 vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~ 943 (1075)
+||||+||||||||+++|+|+|+|++|+|.+||+|++++ +.+|++|++|||||+||+|||||||.++..
T Consensus 482 vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~--------- 552 (686)
T TIGR03797 482 VAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP--------- 552 (686)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC---------
Confidence 999999999999999999999999999999999999987 457889999999999999999999987532
Q ss_pred hhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCC
Q 001446 944 KLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA 1022 (1075)
Q Consensus 944 ~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSa 1022 (1075)
.+|++++++++.++++++++++|+|+||.+ ++|.+||||||||||||||++++|+|||||||||+
T Consensus 553 --------------~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~ 618 (686)
T TIGR03797 553 --------------LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSA 618 (686)
T ss_pred --------------CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 235667778888888889999999999986 67899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1023 TSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1023 lD~~~e~~i~~~~~~~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
||.++|+.+.+.++..++|+|+||||+++++.+|++++|++|.
T Consensus 619 LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Iivl~~G~ 661 (686)
T TIGR03797 619 LDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGR 661 (686)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEEEEECCE
Confidence 9999999999888766899999999999999999999998764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=527.43 Aligned_cols=262 Identities=24% Similarity=0.300 Sum_probs=227.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCCccc
Q 001446 772 LASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKL 851 (1075)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~~ 851 (1075)
+..++.++.++++.+...++.++..-.-+|+++++++.+++..+. ++ ..|-...+|.|+|+||+|.|..++|
T Consensus 481 f~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~----P~----a~pl~~~~G~i~fsnvtF~Y~p~k~ 552 (790)
T KOG0056|consen 481 FLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDL----PG----APPLKVTQGKIEFSNVTFAYDPGKP 552 (790)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcC----CC----CCCccccCCeEEEEEeEEecCCCCc
Confidence 345677889999999999999999888899999988644333211 11 1133345799999999999988999
Q ss_pred cccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhh
Q 001446 852 LARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQI 929 (1075)
Q Consensus 852 vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL 929 (1075)
||+||||+++||++||+|||||+||||++++|+||||.++|+|.|||+||+.+ ..+|++|++||||.+||++||-.||
T Consensus 553 vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNI 632 (790)
T KOG0056|consen 553 VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNI 632 (790)
T ss_pred eeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeehe
Confidence 99999999999999999999999999999999999999999999999999987 5689999999999999999999999
Q ss_pred cC--CCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHH
Q 001446 930 IY--PLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARL 1006 (1075)
Q Consensus 930 ~~--p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARA 1006 (1075)
.| |.+++|++.+|+++|+.||.+.. .|+||+|.+ +.|-.||||||||+||||+
T Consensus 633 ryak~~AsneevyaAAkAA~IHdrIl~------------------------fPegY~t~VGERGLkLSGGEKQRVAiARt 688 (790)
T KOG0056|consen 633 RYAKPSASNEEVYAAAKAAQIHDRILQ------------------------FPEGYNTRVGERGLKLSGGEKQRVAIART 688 (790)
T ss_pred eecCCCCChHHHHHHHHHhhHHHHHhc------------------------CchhhhhhhhhcccccCCcchhhHHHHHH
Confidence 99 55667777888888776554433 366777765 5677899999999999999
Q ss_pred hhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1007 FFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1007 lLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
+|++|.|++|||||||||..+|++||..+.. +++|.|+|||||||+..+|.+|++++|-
T Consensus 689 iLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~ 749 (790)
T KOG0056|consen 689 ILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGR 749 (790)
T ss_pred HhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCe
Confidence 9999999999999999999999999988764 6999999999999999999999998874
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-59 Score=581.34 Aligned_cols=457 Identities=17% Similarity=0.177 Sum_probs=309.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhH-------HH
Q 001446 553 PSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPS-------VD 625 (1075)
Q Consensus 553 ~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~-------~~ 625 (1075)
+....+..++...+|..+++++++. +..||+ ....++..+|++ |++.+...+......++..+ +.
T Consensus 218 ~~~~~~~~~~~~~l~~~~~~~ll~l---~~~~f~----~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 289 (708)
T TIGR01193 218 FLLNVLGQRLSIDIILSYIKHLFEL---PMSFFS----TRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLF 289 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC---CHHHhC----CCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555566666665542 223443 234567888997 78777666554433332222 22
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHHH
Q 001446 626 ILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIE 705 (1075)
Q Consensus 626 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~ 705 (1075)
+++++|.++++. ++.+++...+.....++..+...+..+..+.......+...+.++|+++++++.+.+.+.
T Consensus 290 l~~~~~~l~li~--------l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~ 361 (708)
T TIGR01193 290 LVRQNMLLFLLS--------LLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKID 361 (708)
T ss_pred HHHHhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHH
Confidence 234455544332 111111111112222233333444444444444455556667899999999888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001446 706 SRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGD 785 (1075)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~ 785 (1075)
+.+.+..+...+......+...+..++.. +...+.++++....... ..+.|.+.. +.........++..
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~il~~g~~lv~~g--~ls~G~lva----~~~l~~~~~~pl~~ 430 (708)
T TIGR01193 362 SEFGDYLNKSFKYQKADQGQQAIKAVTKL-----ILNVVILWTGAYLVMRG--KLTLGQLIT----FNALLSYFLTPLEN 430 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcC--CCCHHHHHH----HHHHHHHHHHHHHH
Confidence 77766665544332222111111111111 11111222221111000 012233322 22334456678888
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCCccccccccceeecCCCe
Q 001446 786 ILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKS 865 (1075)
Q Consensus 786 ~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~ 865 (1075)
+......+.+...+++|+.++.+.+++.+... .....++ ..|.|+|+||+|+|++++++|+|+||+|+|||+
T Consensus 431 l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~-----~~~~~~~---~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~ 502 (708)
T TIGR01193 431 IINLQPKLQAARVANNRLNEVYLVDSEFINKK-----KRTELNN---LNGDIVINDVSYSYGYGSNILSDISLTIKMNSK 502 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccccc-----cccCCCC---CCCcEEEEEEEEEcCCCCcceeceeEEECCCCE
Confidence 88889999999999999999986543322110 0011111 257899999999998777899999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHh
Q 001446 866 LLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRAL 943 (1075)
Q Consensus 866 vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~ 943 (1075)
||||||||||||||+++|.|+|+|++|+|.+||+|++++ +.+|++|+||||||+||+|||||||.++..
T Consensus 503 vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~--------- 573 (708)
T TIGR01193 503 TTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAK--------- 573 (708)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCC---------
Confidence 999999999999999999999999999999999999988 457889999999999999999999997521
Q ss_pred hhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCC
Q 001446 944 KLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA 1022 (1075)
Q Consensus 944 ~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSa 1022 (1075)
++..|++++++++.+++++++.++|.||||.+ ++|.+|||||||||+||||++++|+|||||||||+
T Consensus 574 ------------~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~ 641 (708)
T TIGR01193 574 ------------ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSN 641 (708)
T ss_pred ------------CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCcccc
Confidence 11235566777777888888888999999986 67899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHh-cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1023 TSVDVEEQLYRLAKD-MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1023 lD~~~e~~i~~~~~~-~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
||.++|+.+++.++. .++|+|+||||+++++.+|+++++++|.
T Consensus 642 LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G~ 685 (708)
T TIGR01193 642 LDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGK 685 (708)
T ss_pred CCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEEEECCE
Confidence 999999999887765 5899999999999999999999998775
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-59 Score=581.47 Aligned_cols=461 Identities=21% Similarity=0.234 Sum_probs=308.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHHHH-------
Q 001446 554 SIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDI------- 626 (1075)
Q Consensus 554 ~~~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~~~------- 626 (1075)
....+..++...++..+++++++. +..||+ ....++..+|++.| +.+...+...+..++..++.+
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~ll~l---~~~~~~----~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l 288 (710)
T TIGR03796 217 YLRRLQIKLAVGMSARFLWHILRL---PVRFFA----QRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLM 288 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC---CHHHHc----CCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555666655542 223443 23456788899888 456655554443333333222
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHHHH
Q 001446 627 LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIES 706 (1075)
Q Consensus 627 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~~ 706 (1075)
++++|.++++. ++..++...+.....+.......+.++..+.......+...+.++|+.++++....+.+.+
T Consensus 289 ~~~~~~l~li~--------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~ 360 (710)
T TIGR03796 289 LLYDPVLTLIG--------IAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAG 360 (710)
T ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHH
Confidence 33444443331 1111111111122222223333333333344444445555678999999998888777776
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 707 RFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDI 786 (1075)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~ 786 (1075)
.+.+..+...+......+...+..++.... ..+.++++........ .+.|.+.. +.........++..+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~il~~g~~~v~~g~--lt~G~lva----~~~l~~~~~~p~~~l 429 (710)
T TIGR03796 361 YQAKLLNAQQELGVLTQILGVLPTLLTSLN-----SALILVVGGLRVMEGQ--LTIGMLVA----FQSLMSSFLEPVNNL 429 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCC--CCHHHHHH----HHHHHHHHHHHHHHH
Confidence 666666554433322222222222221111 1111222211110000 12233322 223344566778888
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCC-ccccccccceeecCCCe
Q 001446 787 LELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTFEIVPGKS 865 (1075)
Q Consensus 787 ~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL~~vs~~I~~Ge~ 865 (1075)
......+..+..+.+|+.++++.+++.+............ +.....|.|+|+||+|+||+ .+++|+|+||+|+|||+
T Consensus 430 ~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~--~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~ 507 (710)
T TIGR03796 430 VGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSE--PSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQR 507 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccc--cCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCE
Confidence 8888899999999999999986543322110000000000 10112578999999999986 57899999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHh
Q 001446 866 LLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRAL 943 (1075)
Q Consensus 866 vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~ 943 (1075)
||||||||||||||+++|+|+|+|++|+|.+||+|++++ +.+|++|+||||||+||+|||||||.+...
T Consensus 508 vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~--------- 578 (710)
T TIGR03796 508 VALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP--------- 578 (710)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCC---------
Confidence 999999999999999999999999999999999999987 457889999999999999999999986421
Q ss_pred hhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCC
Q 001446 944 KLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA 1022 (1075)
Q Consensus 944 ~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSa 1022 (1075)
+..|++++++++.+++++++.++|+|+||.+ ++|.+||||||||||||||++++|+|||||||||+
T Consensus 579 -------------~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~ 645 (710)
T TIGR03796 579 -------------TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSA 645 (710)
T ss_pred -------------CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECcccc
Confidence 1235667777888888888999999999986 67899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1023 TSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1023 lD~~~e~~i~~~~~~~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
||.++|+.+.+.++..++|+|+||||+++++.+|++++|++|.
T Consensus 646 LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~G~ 688 (710)
T TIGR03796 646 LDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGK 688 (710)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeCCE
Confidence 9999999999888778999999999999999999999998764
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-59 Score=566.55 Aligned_cols=192 Identities=22% Similarity=0.286 Sum_probs=156.7
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCccccccEEEEcCCCC
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 260 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~ 260 (1075)
+|.++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|. ..++|++|++.
T Consensus 1 ~i~i~nls~~~g-~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~-----~~i~~~~q~~~ 74 (638)
T PRK10636 1 MIVFSSLQIRRG-VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN-----WQLAWVNQETP 74 (638)
T ss_pred CEEEEEEEEEeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----CEEEEEecCCC
Confidence 378999999995 568999999999999999999999999999999999999999999999873 25999999764
Q ss_pred CCcCCHHHHhcCCCC---------------C------------CcccCcCCHHHHHHHHHHcCCh-hHHhcCCCCcccCC
Q 001446 261 TAVGTLRDQLIYPLT---------------S------------DQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINW 312 (1075)
Q Consensus 261 ~~~~tv~~ni~~~~~---------------~------------~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~ 312 (1075)
.+..++.+.+.-... . ..........++.++++.+|+. +..++.+
T Consensus 75 ~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~------- 147 (638)
T PRK10636 75 ALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPV------- 147 (638)
T ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCch-------
Confidence 444455444321100 0 0000011234677788888886 4555544
Q ss_pred CCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 313 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 313 g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
.+|||||||||+|||||+.+|++|||||||++||+.+..++.+.+++.+.|+|+||||.+++. .||++++|++
T Consensus 148 -~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~ 221 (638)
T PRK10636 148 -SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQ 221 (638)
T ss_pred -hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeC
Confidence 689999999999999999999999999999999999999999999988889999999999885 6999999985
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=602.56 Aligned_cols=201 Identities=19% Similarity=0.267 Sum_probs=162.6
Q ss_pred ceEEeeeeeeCC---CccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCC---CCCCeEecCCCCCccccCCcC
Q 001446 836 SISFSKLDIITP---SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP---VVSGSLTKPSQHIDEEAGSGC 909 (1075)
Q Consensus 836 ~I~f~~V~~~yp---~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~---~~sG~I~idg~di~~~~~~r~ 909 (1075)
.++++||++.|+ +.+++|+|||++|+|||.+||+||||||||||+++|.|+.+ +++|+|.+||.+++. ..|+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~--~~~~ 836 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS--SFQR 836 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh--hhhc
Confidence 379999999875 24679999999999999999999999999999999999998 688999999998853 3466
Q ss_pred cEEEEcCCCC-CCCcchhhhhcCCC------ChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccC
Q 001446 910 GIFYVPQRPY-TCLGTLRDQIIYPL------SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVG 982 (1075)
Q Consensus 910 ~i~~VpQdP~-Lf~gTir~NL~~p~------~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~G 982 (1075)
+++||||++. ++..|+||||.+.. ..+++ ..++.+.++++.++|.+.
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~-------------------~~~~~v~~~l~~l~L~~~------- 890 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKS-------------------EKMEYVEEVIKLLEMESY------- 890 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHH-------------------HHHHHHHHHHHHcCChhh-------
Confidence 7999999976 45679999998521 10000 012345677787777443
Q ss_pred Ccccc-ccccCCChhHHHHHHHHHHhhcCCC-EeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch--hhc
Q 001446 983 WDANL-NWEDILSLGEQQRLGMARLFFHKPK-FGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI--PFH 1055 (1075)
Q Consensus 983 ldt~~-~~g~~LSgGQrQrlaiARAlLr~p~-ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i--~~~ 1055 (1075)
.|+.+ +.+..||||||||++|||||+++|+ ||+||||||+||..+...+.+.+++ .|+|||+++|+++.. +..
T Consensus 891 ~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~ 970 (1394)
T TIGR00956 891 ADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEF 970 (1394)
T ss_pred CCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhc
Confidence 34443 2345799999999999999999997 9999999999999999888777653 589999999999863 678
Q ss_pred cceEEEEcC
Q 001446 1056 SLELRLIDG 1064 (1075)
Q Consensus 1056 ~~~l~l~~g 1064 (1075)
|+++.|.+|
T Consensus 971 D~vl~L~~G 979 (1394)
T TIGR00956 971 DRLLLLQKG 979 (1394)
T ss_pred CEEEEEcCC
Confidence 999999665
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-58 Score=556.16 Aligned_cols=456 Identities=22% Similarity=0.241 Sum_probs=310.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHH-------H
Q 001446 553 PSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSV-------D 625 (1075)
Q Consensus 553 ~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~-------~ 625 (1075)
+.......+.....|.++++++++. +..+|+ ....++..+|+++|++.+...+...+..++..++ .
T Consensus 82 ~~~~~~~~~~~~~lR~~l~~~l~~~---~~~~~~----~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (574)
T PRK11160 82 LVSHDATFRVLTHLRVFTFSKLLPL---SPAGLA----RYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIG 154 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc---ChHhhc----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555666677777776652 223443 2345678899999999998877655544433322 2
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHHH
Q 001446 626 ILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIE 705 (1075)
Q Consensus 626 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~ 705 (1075)
++++.|.++++... +++.+.+. ......+.......+.++..+.+.....+...+.+++++|+.++.+.+.+.
T Consensus 155 l~~~~~~l~l~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~ 227 (574)
T PRK11160 155 LSFFDLTLALTLGG-----ILLLLLLL--LPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLE 227 (574)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHH
Confidence 34556666544211 11111110 001111111222333344444455555666667889999999988888777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001446 706 SRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGD 785 (1075)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~ 785 (1075)
+..++..+...+..+...+......++. .+..++.++++....... .+.|.+..++.+.. .....++..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~g~~~~~g~---~t~g~l~a~~~~~~---~~~~~~~~~ 296 (574)
T PRK11160 228 QTEQQWLAAQRRQANLTGLSQALMILAN-----GLTVVLMLWLAAGGVGGN---AQPGALIALFVFAA---LAAFEALMP 296 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhccc---cchhHHHHHHHHHH---HHHHHHHHH
Confidence 7776666555443332222222222221 111122222222211110 11233322222211 112234555
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCCc-cccccccceeecCCC
Q 001446 786 ILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ-KLLARQLTFEIVPGK 864 (1075)
Q Consensus 786 ~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~-~~vL~~vs~~I~~Ge 864 (1075)
+......+.+...+.+|+.++.+.+++.+.. ....+ + ...+.|+|+||+|+||+. +++|+|+||+|+|||
T Consensus 297 l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~----~~~~~---~--~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~ 367 (574)
T PRK11160 297 VAGAFQHLGQVIASARRINEITEQKPEVTFP----TTSTA---A--ADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGE 367 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC----cccCC---C--CCCCeEEEEEEEEECCCCCCcceecceEEECCCC
Confidence 6666777788889999999998754321110 00000 1 124689999999999864 689999999999999
Q ss_pred eEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHH
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRA 942 (1075)
Q Consensus 865 ~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a 942 (1075)
++|||||||||||||+++|.|+|+|++|+|.+||+|++++ ..+|++|++|||||+||+|||||||.++..
T Consensus 368 ~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~-------- 439 (574)
T PRK11160 368 KVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP-------- 439 (574)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCC--------
Confidence 9999999999999999999999999999999999999987 357888999999999999999999987532
Q ss_pred hhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCC
Q 001446 943 LKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1021 (1075)
Q Consensus 943 ~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATS 1021 (1075)
+..|++++++++.++++++++. |+||||.+ ++|.+||||||||+|||||++++|+|||||||||
T Consensus 440 --------------~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts 504 (574)
T PRK11160 440 --------------NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTE 504 (574)
T ss_pred --------------ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 1246677788889999999999 99999986 6789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1022 ATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1022 alD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
+||.++|+.+++.+.+ .++|+|+||||+++++.+|+++++++|.
T Consensus 505 ~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~ 550 (574)
T PRK11160 505 GLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQ 550 (574)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCe
Confidence 9999999999888754 5899999999999999999999998775
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-58 Score=570.28 Aligned_cols=456 Identities=18% Similarity=0.185 Sum_probs=309.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHH-------
Q 001446 552 APSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSV------- 624 (1075)
Q Consensus 552 ~~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~------- 624 (1075)
.+....+..++...+|..+++|+++.. ..| + ....++..+|+ +|++.+...+...+..++..++
T Consensus 208 ~~~~~~~~~~~~~~l~~~~~~~ll~l~---~~~-~----~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~ 278 (694)
T TIGR03375 208 SYFLDVAGKKADLILSAKLFERVLGLR---MEA-R----PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLL 278 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC---ccc-C----CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 333444445555555666666665432 222 2 23456778898 7998888776554333322222
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHH
Q 001446 625 DILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMI 704 (1075)
Q Consensus 625 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~ 704 (1075)
.+++++|.++++. ++.+++...+.....++......+..+..+.......+...+.++|+.++.+..+.+.+
T Consensus 279 ~l~~~~~~l~li~--------l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~ 350 (694)
T TIGR03375 279 VIAIIGGPLVWVP--------LVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRW 350 (694)
T ss_pred HHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHH
Confidence 2234445444332 11111111111222223333333434444444445555666789999999988887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001446 705 ESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFG 784 (1075)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~ 784 (1075)
.+.+.+..+...+......+...+..++.. +...+.++++....... ..+.|.+.. +..+......++.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~il~~g~~~v~~g--~ls~G~l~a----~~~~~~~~~~p~~ 419 (694)
T TIGR03375 351 EQTVAALARSGLKSRFLSNLATNFAQFIQQ-----LVSVAIVVVGVYLISDG--ELTMGGLIA----CVMLSGRALAPLG 419 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcC--CCCHHHHHH----HHHHHHHHHHHHH
Confidence 766666655444332222222222111111 11111222221111000 012233322 2233445567788
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCC-ccccccccceeecCC
Q 001446 785 DILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTFEIVPG 863 (1075)
Q Consensus 785 ~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL~~vs~~I~~G 863 (1075)
.+.....++.+...+.+|+.++.+.+++.+... .. . . .....|.|+|+||+|+||+ .+++|+|+||+|+||
T Consensus 420 ~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~----~~-~-~--~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G 491 (694)
T TIGR03375 420 QLAGLLTRYQQAKTALQSLDELMQLPVERPEGT----RF-L-H--RPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPG 491 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC----CC-C-C--CCCccceEEEEEEEEEeCCCCccceeeeeEEECCC
Confidence 888888889999999999999987543221110 00 0 0 0112578999999999986 568999999999999
Q ss_pred CeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHH
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELR 941 (1075)
Q Consensus 864 e~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~ 941 (1075)
|++||||+||||||||+++|+|+|+|++|+|.+||+|++++ +.+|++|++|||||++|+|||||||.++..
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~------- 564 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP------- 564 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC-------
Confidence 99999999999999999999999999999999999999987 457889999999999999999999987532
Q ss_pred HhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEeeccC
Q 001446 942 ALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1020 (1075)
Q Consensus 942 a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEAT 1020 (1075)
+.+|++++++++.++++++++.+|+||||.+ ++|.+||||||||||||||++++|+|+||||||
T Consensus 565 ---------------~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~T 629 (694)
T TIGR03375 565 ---------------YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPT 629 (694)
T ss_pred ---------------CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1235667777788888888889999999986 678999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1021 NATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1021 SalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
|+||.++|+.+++.+.+ .++|+|+||||+++++.+|+++++++|.
T Consensus 630 s~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~ 676 (694)
T TIGR03375 630 SAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGR 676 (694)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCE
Confidence 99999999999887754 5899999999999999999999998774
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-58 Score=560.60 Aligned_cols=453 Identities=17% Similarity=0.263 Sum_probs=310.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHHHH-------HH
Q 001446 556 RHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDI-------LW 628 (1075)
Q Consensus 556 ~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~~~-------~~ 628 (1075)
..+........|..+++++++. +..+|+ ....++..+|+++|++.+...+...+..++..++.+ ++
T Consensus 90 ~~~~~~~~~~lr~~~~~~l~~~---~~~~~~----~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (582)
T PRK11176 90 SWVSGKVVMTMRRRLFGHMMGM---PVSFFD----KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFY 162 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC---CHHHhC----CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666665542 122332 234567889999999998877665555444433333 33
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHHHHHH
Q 001446 629 FTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRF 708 (1075)
Q Consensus 629 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~ 708 (1075)
++|.++++. ++ .+++.........++......+.++..+.+.....+...+.++++.++.++.+.+.+.+..
T Consensus 163 ~~~~l~l~~-------l~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~ 234 (582)
T PRK11176 163 YSWQLSLIL-------IV-IAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVS 234 (582)
T ss_pred HHHHHHHHH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHH
Confidence 344433221 11 1111122222223333333444344444444445555667889999999888877777766
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 709 RELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILE 788 (1075)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 788 (1075)
++..+...+..+...+......++... ...+.++++...... + ..+.|.+..+ .......+.++..+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~g~~~~~~-g-~is~g~~~~~----~~~~~~~~~pl~~l~~ 303 (582)
T PRK11176 235 NRMRQQGMKMVSASSISDPIIQLIASL-----ALAFVLYAASFPSVM-D-TLTAGTITVV----FSSMIALMRPLKSLTN 303 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHc-C-CCCHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 666655544433332222222222111 111111111110000 0 0122333222 2233445667888888
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCC-ccccccccceeecCCCeEE
Q 001446 789 LHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTFEIVPGKSLL 867 (1075)
Q Consensus 789 ~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL~~vs~~I~~Ge~va 867 (1075)
....+.....+.+|+.++.+.+++.+.. . ...+ ...+.|+|+||+|+||+ .+++|+|+||+|+|||++|
T Consensus 304 ~~~~~~~~~~~~~ri~~~~~~~~~~~~~------~--~~~~--~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~a 373 (582)
T PRK11176 304 VNAQFQRGMAACQTLFAILDLEQEKDEG------K--RVIE--RAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVA 373 (582)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCCC------C--cCCC--CCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEE
Confidence 8888888889999999887643221110 0 0111 12467999999999986 4789999999999999999
Q ss_pred EEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhh
Q 001446 868 VTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKL 945 (1075)
Q Consensus 868 IvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~ 945 (1075)
|||+||||||||+++|+|+|+|++|+|.+||+|+++++ .+|++|+||||||++|+||||+||.++...
T Consensus 374 IvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~---------- 443 (582)
T PRK11176 374 LVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTE---------- 443 (582)
T ss_pred EECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCC----------
Confidence 99999999999999999999999999999999999873 567889999999999999999999975321
Q ss_pred cCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCC
Q 001446 946 HGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATS 1024 (1075)
Q Consensus 946 ~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD 1024 (1075)
...|++++++++.++++++++++|+|+||.+ ++|.+||||||||||||||++|+|+|||||||||+||
T Consensus 444 -----------~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD 512 (582)
T PRK11176 444 -----------QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512 (582)
T ss_pred -----------CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCC
Confidence 1246677888888899999999999999976 6788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1025 VDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1025 ~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
.++|..+.+.+.. .++|+|+||||+++++.+|+++++++|.
T Consensus 513 ~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~ 555 (582)
T PRK11176 513 TESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGE 555 (582)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCE
Confidence 9999998887754 5899999999999999999999998765
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-58 Score=559.98 Aligned_cols=191 Identities=21% Similarity=0.237 Sum_probs=152.8
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEc
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~Vp 915 (1075)
-|+++||++.|++ .++|+|+||+|++|+++||+||||||||||+++|.|+++|++|+|.+ |.+ .+|+|++
T Consensus 319 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~--------~~i~y~~ 388 (635)
T PRK11147 319 VFEMENVNYQIDG-KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK--------LEVAYFD 388 (635)
T ss_pred eEEEeeeEEEECC-eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC--------cEEEEEe
Confidence 4899999999964 56999999999999999999999999999999999999999999998 432 2599999
Q ss_pred CCC-CCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchh-hhhhhccCCccccccccC
Q 001446 916 QRP-YTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY-LLEREEVGWDANLNWEDI 992 (1075)
Q Consensus 916 QdP-~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~-~i~~~~~Gldt~~~~g~~ 992 (1075)
|++ .+++ -|+++|+.++..... ....+..+.+.++.+++.. .. +.. ...
T Consensus 389 q~~~~l~~~~tv~e~l~~~~~~~~------------------~~~~~~~~~~~l~~~~l~~~~~-------~~~---~~~ 440 (635)
T PRK11147 389 QHRAELDPEKTVMDNLAEGKQEVM------------------VNGRPRHVLGYLQDFLFHPKRA-------MTP---VKA 440 (635)
T ss_pred CcccccCCCCCHHHHHHhhccccc------------------ccchHHHHHHHHHhcCCCHHHH-------hCh---hhh
Confidence 986 3655 499999975321000 0001233455666665521 11 111 246
Q ss_pred CChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHhcCceEEEecCCCCch-hhccceEEEE-cC
Q 001446 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALI-PFHSLELRLI-DG 1064 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~~~~TvI~IaHRls~i-~~~~~~l~l~-~g 1064 (1075)
||||||||++||||++++|++|||||||++||..+...+.+.++..+.|||+|+|++..+ .++|+++.+. +|
T Consensus 441 LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g 514 (635)
T PRK11147 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNG 514 (635)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999999999999999999998877677999999999866 5899999995 44
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=502.79 Aligned_cols=422 Identities=20% Similarity=0.224 Sum_probs=278.5
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhhhHhHHHH-------HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccc
Q 001446 594 SIDADQRITHDLEKLTTDLSGLVTGMVKPSVDI-------LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDL 666 (1075)
Q Consensus 594 ~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (1075)
.++..+|+..|++.++..+.-++...+..++.+ .+++|.+++..+.. +.+..+++...+++.- ...
T Consensus 114 ~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~---ll~~lli~P~~~~~~~----~~~ 186 (573)
T COG4987 114 SGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLI---LLLLLLIIPTLFYRAG----RKF 186 (573)
T ss_pred hHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHhh----hhh
Confidence 467899999999999988766655544433332 23444444332111 1111111111111111 112
Q ss_pred cHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHH
Q 001446 667 TSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSL 746 (1075)
Q Consensus 667 ~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (1075)
..+..+..+.+|...............||+++..++.++..-....+..++..+...+......++. ..+..++.+
T Consensus 187 ~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~----g~~v~~~l~ 262 (573)
T COG4987 187 GAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIA----GLLVIGLLL 262 (573)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 2222333334444444443444556677776655444433333333322222222222222212111 112222233
Q ss_pred HHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCcc
Q 001446 747 LYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDIL-ELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQ 825 (1075)
Q Consensus 747 ~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~ 825 (1075)
|.+.....+.. ..+ ......+ ++...+.+|..+. ..+....+...|+.|+.++.+.+++...+ .
T Consensus 263 w~a~~~~~G~~--~~~--~aa~~ll---~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~-----~--- 327 (573)
T COG4987 263 WMAAQVGAGAL--AQP--GAALALL---VIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP-----D--- 327 (573)
T ss_pred HHHhcCcCCCc--chh--HHHHHHH---HHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC-----c---
Confidence 33332111100 000 0111111 1122233344444 44455666667788888876543332211 0
Q ss_pred CcCCCCCCCCceEEeeeeeeCCCc-cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc
Q 001446 826 HKWNSTDYQDSISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE 904 (1075)
Q Consensus 826 ~~w~~~~~~g~I~f~~V~~~yp~~-~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~ 904 (1075)
+..+.. ...++++||+|+||+. +++|+|+||++++||||||+|||||||||++++|.|-|+|++|+|..+|.+++.+
T Consensus 328 ~~~~~~--~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l 405 (573)
T COG4987 328 EQTATT--GQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL 405 (573)
T ss_pred cccCCc--cceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhC
Confidence 001111 1279999999999985 4899999999999999999999999999999999999999999999999999999
Q ss_pred cC--CcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccC
Q 001446 905 AG--SGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVG 982 (1075)
Q Consensus 905 ~~--~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~G 982 (1075)
+. +|..|++++|+++||+||||+||.... ++.+|++++++++.|+|.++++..|+|
T Consensus 406 ~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~----------------------~~AsDEel~~aL~qvgL~~l~~~~p~g 463 (573)
T COG4987 406 DEQALRETISVLTQRVHLFSGTLRDNLRLAN----------------------PDASDEELWAALQQVGLEKLLESAPDG 463 (573)
T ss_pred ChhhHHHHHhhhccchHHHHHHHHHHHhhcC----------------------CCCCHHHHHHHHHHcCHHHHHHhChhh
Confidence 54 788999999999999999999997422 234688899999999999999999999
Q ss_pred Ccccc-ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceE
Q 001446 983 WDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLEL 1059 (1075)
Q Consensus 983 ldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l 1059 (1075)
|+|.+ +.|..|||||||||||||+||++.+|+||||||.+||.+||++|.+.+.+ +|+|+|+|+||+...+..|+++
T Consensus 464 l~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIi 543 (573)
T COG4987 464 LNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRII 543 (573)
T ss_pred hhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEE
Confidence 99986 67899999999999999999999999999999999999999999887754 6999999999999999999999
Q ss_pred EEEcCC
Q 001446 1060 RLIDGE 1065 (1075)
Q Consensus 1060 ~l~~g~ 1065 (1075)
++++|+
T Consensus 544 vl~~Gk 549 (573)
T COG4987 544 VLDNGK 549 (573)
T ss_pred EEECCe
Confidence 998884
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-56 Score=574.73 Aligned_cols=199 Identities=20% Similarity=0.237 Sum_probs=171.8
Q ss_pred ccEEEEeEEEEcC-CCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----ccccccEE
Q 001446 180 NYIEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIF 253 (1075)
Q Consensus 180 ~~i~~~~v~~~~~-~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~ 253 (1075)
..|+++|+++.|+ +++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ...++.+|
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE
Confidence 3689999999995 35789999999999999999999999999999999999999999999999964 13457899
Q ss_pred EEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcC
Q 001446 254 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 332 (1075)
Q Consensus 254 ~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~ 332 (1075)
||||++.++. .|++||+.++...........++++.++++.++|.+..++.+ .+|||||||||+|||||+.
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~--------~~LSGGqKQRLsLArALi~ 1078 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEA--------QDLSGGMQRKLSVAIAFVG 1078 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHHHHc
Confidence 9999998776 599999987533221111122356788999999998888766 6899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 333 KPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 333 ~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
+|+++||||||+|||+.+++.+++.+++ .|+|+|++||+++.+. .||+|++|++
T Consensus 1079 ~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~ 1135 (2272)
T TIGR01257 1079 DAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQ 1135 (2272)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999998865 4899999999999885 6999999986
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-57 Score=549.65 Aligned_cols=451 Identities=17% Similarity=0.194 Sum_probs=302.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHH-------
Q 001446 552 APSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSV------- 624 (1075)
Q Consensus 552 ~~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~------- 624 (1075)
.+....+..++..+.|..+++++++. +..+|+ ....++..+|+++|++.+...+...+..++..++
T Consensus 65 ~~~~~~~~~~~~~~lr~~l~~~l~~~---~~~~~~----~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~ 137 (529)
T TIGR02857 65 ERAAARAAAAVKSQLRERLLAAVAAL---GPGWLQ----GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILA 137 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC---Cchhhc----cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555666666666543 234443 2345678899999999988766554433333222
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHH
Q 001446 625 DILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMI 704 (1075)
Q Consensus 625 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~ 704 (1075)
.++++.|.++++. ++..+ +...+.....+.......+.++..+.......+...+.++|+.|+.++.+.+.+
T Consensus 138 ~l~~~~~~l~~~~-------l~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~ 209 (529)
T TIGR02857 138 AVFPADWISGLIL-------LLTAP-LIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAI 209 (529)
T ss_pred HHHHHhHHHHHHH-------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHH
Confidence 2234455444331 11111 111111111222222223333333334444455556789999999988887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhh-cccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001446 705 ESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEH-KGDRALVSTQGELAHALRFLASVVSQSFLAF 783 (1075)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~ 783 (1075)
.+..++..+...+..+...+......++.... ..+..++.+... .+. .+.|.+.. +..+......++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~----~t~g~~~~----~~~~~~~~~~pl 277 (529)
T TIGR02857 210 ARSSEEYRERTMRVLRIAFLSSAVLELFATLS----VALVAVYIGFRLLAGD----LDLATGLF----VLLLAPEFYLPL 277 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCC----CCHHHHHH----HHHHHHHHHHHH
Confidence 66665555544333222222222222211110 001111111111 111 11222222 222334556677
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCCc-cccccccceeecC
Q 001446 784 GDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ-KLLARQLTFEIVP 862 (1075)
Q Consensus 784 ~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~-~~vL~~vs~~I~~ 862 (1075)
..+......+.....+.+|+.++.+.+++.. . .. +.+.+ ..+.|+|+||+|+||+. +++|+|+||+|+|
T Consensus 278 ~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~--~---~~--~~~~~---~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~ 347 (529)
T TIGR02857 278 RQLGADYHARADGVAAAEALFAVLDAPRPLA--G---KA--PVTAA---PAPSLEFSGLSVAYPGRRAPALRPVSFTVPP 347 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccC--C---Cc--CCCCC---CCCeEEEEEEEEECCCCCcccccceeEEECC
Confidence 7888888888889999999999876321110 0 00 00111 13679999999999874 5899999999999
Q ss_pred CCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHH
Q 001446 863 GKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAEL 940 (1075)
Q Consensus 863 Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~ 940 (1075)
||++|||||||||||||+++|.|+|+|++|+|.+||.|++++ +.+|++++||||||++|+|||||||.++...
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~----- 422 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPD----- 422 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCC-----
Confidence 999999999999999999999999999999999999999987 4568889999999999999999999875321
Q ss_pred HHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEeecc
Q 001446 941 RALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDEC 1019 (1075)
Q Consensus 941 ~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEA 1019 (1075)
..|++++++++.++++++++++|+||||.+ ++|.+||||||||++||||++++|+|+|||||
T Consensus 423 -----------------~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ 485 (529)
T TIGR02857 423 -----------------ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEP 485 (529)
T ss_pred -----------------CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 235667778888899999999999999986 57899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEE
Q 001446 1020 TNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRL 1061 (1075)
Q Consensus 1020 TSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l 1061 (1075)
||+||.++++.+++.+.+ .++|+|+||||+++++.+|+++++
T Consensus 486 ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 486 TAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999887765 589999999999999999999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-57 Score=554.11 Aligned_cols=460 Identities=16% Similarity=0.214 Sum_probs=314.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHH
Q 001446 556 RHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKA 635 (1075)
Q Consensus 556 ~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~~~~~~~~~l~~ 635 (1075)
.....+....+|..+++++++. +..+++ ....++..+|+++|++.+...+...+..++..++.++.+...++.
T Consensus 79 ~~~~~~~~~~lr~~l~~~~~~~---~~~~~~----~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~ 151 (571)
T TIGR02203 79 SWVSNKVVRDIRVRMFEKLLGL---PVSFFD----RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLY 151 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC---CHHHhC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555432 122332 234567889999999999888776655555444333322222222
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q 001446 636 LTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHS 715 (1075)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~ 715 (1075)
+.+...+. +++..++...+.....++......+.++..+.......+...+.++++.++.++.....+.+.+++..+..
T Consensus 152 ~~~~l~~i-~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~ 230 (571)
T TIGR02203 152 YSWQLTLI-VVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLA 230 (571)
T ss_pred HhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 22111111 11111222222223333334444444555555556666777788999999998877776666666655544
Q ss_pred HHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 716 LLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVE 795 (1075)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1075)
.+..+...+...+..++... ...+.++++....... ..+.|.+... ..++.....++..+......+.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~g--~lt~g~l~a~----~~~~~~~~~pl~~l~~~~~~~~~ 299 (571)
T TIGR02203 231 MKMTSAGSISSPITQLIASL-----ALAVVLFIALFQAQAG--SLTAGDFTAF----ITAMIALIRPLKSLTNVNAPMQR 299 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcC--CCCHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333333222222222111 1111112211110000 0122333222 23345566788888888899999
Q ss_pred HhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCC-ccccccccceeecCCCeEEEEcCCCC
Q 001446 796 LSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGS 874 (1075)
Q Consensus 796 ~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL~~vs~~I~~Ge~vaIvG~SGs 874 (1075)
...+.+|+.++.+.+++.+.. .. ..+ ...+.|+|+||+|+||+ ++++|+|+||+|+|||+++|+|+|||
T Consensus 300 ~~~~~~ri~~~l~~~~~~~~~-----~~---~~~--~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGs 369 (571)
T TIGR02203 300 GLAAAESLFTLLDSPPEKDTG-----TR---AIE--RARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGS 369 (571)
T ss_pred HHHHHHHHHHHHcCCCCCCCC-----CC---CCC--CCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCC
Confidence 999999999987643221110 00 011 12467999999999986 56899999999999999999999999
Q ss_pred cHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCccc
Q 001446 875 GKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKL 952 (1075)
Q Consensus 875 GKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~ 952 (1075)
|||||+++|.|+|+|++|+|.+||+|++.+ +.+|++++||||+|++|+|||||||.++...
T Consensus 370 GKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~----------------- 432 (571)
T TIGR02203 370 GKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTE----------------- 432 (571)
T ss_pred CHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCC-----------------
Confidence 999999999999999999999999999987 4567889999999999999999999976320
Q ss_pred ccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHH
Q 001446 953 VDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQL 1031 (1075)
Q Consensus 953 ~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i 1031 (1075)
+..|++++++++.+++++++.++|+|+||.+ ++|.+||||||||||||||++++|+|+|||||||+||.++++.+
T Consensus 433 ----~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i 508 (571)
T TIGR02203 433 ----QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLV 508 (571)
T ss_pred ----CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 1346678888899999999999999999986 67899999999999999999999999999999999999999999
Q ss_pred HHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1032 YRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1032 ~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
.+.++. +++|+|+||||++..+++|+++++++|.
T Consensus 509 ~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~ 544 (571)
T TIGR02203 509 QAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGR 544 (571)
T ss_pred HHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCE
Confidence 887754 5899999999999999999999997664
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-57 Score=553.94 Aligned_cols=445 Identities=17% Similarity=0.191 Sum_probs=297.3
Q ss_pred HHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHHHHH-------HHHHH
Q 001446 560 ARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDIL-------WFTWR 632 (1075)
Q Consensus 560 ~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~~~~-------~~~~~ 632 (1075)
.+.....|..+++++++. +..+|+ ....++..+|+++|++.+...+...+..++..++.++ ++.|.
T Consensus 94 ~~~~~~lr~~l~~~l~~~---~~~~~~----~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (592)
T PRK10790 94 VGVVQQLRTDVMDAALRQ---PLSAFD----TQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWR 166 (592)
T ss_pred HHHHHHHHHHHHHHHHcC---CHHHhC----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555554432 123443 3345778899999999998877665555444433322 23344
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHHHHHHHHHH
Q 001446 633 MKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELL 712 (1075)
Q Consensus 633 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~ 712 (1075)
++++. ++..++. ........+.......+.++..+.......+...+.++++.|+.++.....+.+..++..
T Consensus 167 l~li~-------l~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~ 238 (592)
T PRK10790 167 MALVA-------IMIFPAV-LVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHY 238 (592)
T ss_pred HHHHH-------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 33221 1111111 111111111111222222222222333344555667899999987666555555444444
Q ss_pred HHHHHHHHHHHH-hhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 713 EHSLLLLKKKWL-FGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHR 791 (1075)
Q Consensus 713 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 791 (1075)
+...+..+...+ ......++.. .+..++.++++....+. .+.|.+.. +..+...+..++..+.....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~----is~g~l~a----~~~~~~~~~~pl~~l~~~~~ 306 (592)
T PRK10790 239 MARMQTLRLDGFLLRPLLSLFSA----LILCGLLMLFGFSASGT----IEVGVLYA----FISYLGRLNEPLIELTTQQS 306 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC----cCHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 332222221111 1111111110 01111111111111111 11222222 22334456677888888888
Q ss_pred HHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCCccccccccceeecCCCeEEEEcC
Q 001446 792 KFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGP 871 (1075)
Q Consensus 792 ~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~ 871 (1075)
.+.+...+.+|+.++.+.+++... . . ..++ ..+.|+|+||+|+||+++++|+|+||+|+|||++||||+
T Consensus 307 ~~~~~~~s~~ri~~~l~~~~~~~~----~-~---~~~~---~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~ 375 (592)
T PRK10790 307 MLQQAVVAGERVFELMDGPRQQYG----N-D---DRPL---QSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGH 375 (592)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCC----C-C---ccCC---CCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECC
Confidence 889999999999998764321110 0 0 0111 246799999999998767899999999999999999999
Q ss_pred CCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCC
Q 001446 872 NGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKG 949 (1075)
Q Consensus 872 SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~ 949 (1075)
||||||||+++|.|+|+|++|+|.+||.|++++ +.+|++|+||||||+||+||||+||.++.+
T Consensus 376 SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~--------------- 440 (592)
T PRK10790 376 TGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRD--------------- 440 (592)
T ss_pred CCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCC---------------
Confidence 999999999999999999999999999999987 357889999999999999999999997532
Q ss_pred cccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHH
Q 001446 950 EKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVE 1028 (1075)
Q Consensus 950 ~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e 1028 (1075)
..|++++++++.++++++++.+|+||||.+ +.|.+||||||||||||||++++|+|||||||||+||.+++
T Consensus 441 --------~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~ 512 (592)
T PRK10790 441 --------ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTE 512 (592)
T ss_pred --------CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 235667788889999999999999999986 57889999999999999999999999999999999999999
Q ss_pred HHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1029 EQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1029 ~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
+.|.+.++. .++|+|+||||+++++..|++++|++|.
T Consensus 513 ~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~ 551 (592)
T PRK10790 513 QAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQ 551 (592)
T ss_pred HHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCE
Confidence 999887754 5899999999999999999999998775
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-56 Score=547.42 Aligned_cols=457 Identities=17% Similarity=0.217 Sum_probs=301.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccCC-ceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHHHH------
Q 001446 554 SIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDI------ 626 (1075)
Q Consensus 554 ~~~~~~~~~~~~~r~~l~~~ll~~~l~~~-~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~~~------ 626 (1075)
....+..+...+++.++...+++..++.+ .+|+ ..+.++..+|+++|++.+...+...+..++..++..
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~----~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (588)
T PRK13657 75 LVARHADRLAHRRRLAVLTEYFERIIQLPLAWHS----QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPL 150 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHC----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555544444554444432 3443 234567889999999988765544443333322221
Q ss_pred -HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHHH
Q 001446 627 -LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIE 705 (1075)
Q Consensus 627 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~ 705 (1075)
++++|.++++. +++ +++...+.....+.......+.++..+.+.....+...+.++++.|+.++.+...+.
T Consensus 151 ~~~~~~~l~l~~-------l~~-~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~ 222 (588)
T PRK13657 151 ALFMNWRLSLVL-------VVL-GIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALR 222 (588)
T ss_pred HHHHHHHHHHHH-------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHH
Confidence 23344433221 111 111111122222222222333333333444444555567789999999888777776
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhh--cccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001446 706 SRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEH--KGDRALVSTQGELAHALRFLASVVSQSFLAF 783 (1075)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~ 783 (1075)
+...+..+...+......+...+..++.. +...+.++++... .+. .+.|.+...+ .+...++.++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~v~~g~----lt~g~~~a~~----~l~~~~~~~l 289 (588)
T PRK13657 223 DIADNLLAAQMPVLSWWALASVLNRAAST-----ITMLAILVLGAALVQKGQ----LRVGEVVAFV----GFATLLIGRL 289 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCC----cCHHHHHHHH----HHHHHHHHHH
Confidence 66666655443332222112222111111 1111112222111 111 1223333222 2234455667
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCCccccccccceeecCC
Q 001446 784 GDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPG 863 (1075)
Q Consensus 784 ~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~~vL~~vs~~I~~G 863 (1075)
..+......+.....+++|+.++.+.+++.+.. ... ..++ ...+.|+|+||+|.||+.+++|+|+||+|+||
T Consensus 290 ~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~~~--~~~~--~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G 361 (588)
T PRK13657 290 DQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP----PGA--IDLG--RVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPG 361 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC----CCC--CCcC--CCCCeEEEEEEEEEeCCCCceecceeEEECCC
Confidence 777777777777777778877775432211110 000 0111 12467999999999987678999999999999
Q ss_pred CeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHH
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELR 941 (1075)
Q Consensus 864 e~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~ 941 (1075)
|+++|||+||||||||+++|.|+|+|++|+|.+||.|+++++ .+|++|+||||||+||+|||||||.++..
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~------- 434 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP------- 434 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCC-------
Confidence 999999999999999999999999999999999999999883 56788999999999999999999997532
Q ss_pred HhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEeeccC
Q 001446 942 ALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1020 (1075)
Q Consensus 942 a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEAT 1020 (1075)
+..|++++++++.+++.+++.++|+|+||.+ ++|.+||||||||||||||++++|+||||||||
T Consensus 435 ---------------~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpt 499 (588)
T PRK13657 435 ---------------DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEAT 499 (588)
T ss_pred ---------------CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1236667788888899999999999999975 678899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1021 NATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1021 SalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
|+||.++++.+.+.++. .++|+|+||||++.++.+|+++.+++|.
T Consensus 500 s~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~ 546 (588)
T PRK13657 500 SALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGR 546 (588)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCE
Confidence 99999999999887754 4899999999999999999999998775
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-56 Score=499.25 Aligned_cols=474 Identities=18% Similarity=0.243 Sum_probs=319.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHH----H
Q 001446 538 IGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDL----S 613 (1075)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l----~ 613 (1075)
++..++..++..++......+..+.+...+..+.+.+++...+..+-+. .....+...+.+++-++.+...+ |
T Consensus 43 ~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~---~~~~~g~~atl~~egve~l~~Y~~ryLP 119 (559)
T COG4988 43 LILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFI---AQKPAGSAATLALEGIEQLEPYYARYLP 119 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhh---cCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444555555555556666666666666666665554322111 11233455677777777765554 4
Q ss_pred HHhhhhhHhHHH---HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHH-HhhchhhhhHHHHHHHhhH
Q 001446 614 GLVTGMVKPSVD---ILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSRE-QQLEGTFRFMHERLRAHAE 689 (1075)
Q Consensus 614 ~~~~~~i~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~ 689 (1075)
..+..++.+++. ++++.|.-+++. .++.+.+++....+-... ...+.++ ..+......++.+++ ..+
T Consensus 120 q~~~~~ivp~~i~i~v~~~~w~aalIl-----lit~PlIPlfMilvg~~a---~~~s~~~~~~~~~ls~~FLD~Lr-GL~ 190 (559)
T COG4988 120 QMFLSAIVPLLILIAIFFFNWAAALIL-----LITAPLIPLFMILVGLAA---KDASEKQFSALARLSGHFLDRLR-GLE 190 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHhc-ChH
Confidence 444444544433 356777766552 122222222222211111 1111111 111111123334443 568
Q ss_pred HhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHH-HHhhcccchhhhhhhHHHHH
Q 001446 690 SVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLY-AMEHKGDRALVSTQGELAHA 768 (1075)
Q Consensus 690 ~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~ 768 (1075)
|+++|+..+.+.+.+.+.-+++.+..+...+...+.....+|++... .+++.+| +..+.+. |.+..+
T Consensus 191 TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~ls-----iAlvAv~~g~~ll~~-------G~ltl~ 258 (559)
T COG4988 191 TLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLS-----IALVAVYIGFRLLGE-------GDLTLF 258 (559)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcc-------CCccHH
Confidence 99999998887777766666666666666666666555555554322 2222222 2222110 111111
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCC
Q 001446 769 LRF-LASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITP 847 (1075)
Q Consensus 769 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp 847 (1075)
..+ +....-..+.++.++...+..-....++.+.++.+.+.+....+... .....|. ...+|.++|++|.||
T Consensus 259 ~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~----~~~~~~~---~~~ei~~~~l~~~y~ 331 (559)
T COG4988 259 AGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGE----KAEVANE---PPIEISLENLSFRYP 331 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc----ccccccC---CCceeeecceEEecC
Confidence 111 11122345678888888888877777889999998764432211110 0011121 134566669999999
Q ss_pred CccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEEEcCCCCCCCcch
Q 001446 848 SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYVPQRPYTCLGTL 925 (1075)
Q Consensus 848 ~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~VpQdP~Lf~gTi 925 (1075)
+++++++|+||+++||+++||||+||||||||+++|.||.+|++|+|.+||+|+++++ .+|+++++|||+||+|.|||
T Consensus 332 ~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTi 411 (559)
T COG4988 332 DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTI 411 (559)
T ss_pred CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccH
Confidence 9889999999999999999999999999999999999999999999999999999983 57889999999999999999
Q ss_pred hhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHH
Q 001446 926 RDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMA 1004 (1075)
Q Consensus 926 r~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiA 1004 (1075)
||||.+... +.+|+++.++++.++|+++++. |+|+||.+ ++|.+|||||+||+++|
T Consensus 412 reNi~l~~~----------------------~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLA 468 (559)
T COG4988 412 RENILLARP----------------------DASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALA 468 (559)
T ss_pred HHHhhccCC----------------------cCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHH
Confidence 999986432 1346778888899999999998 99999986 68899999999999999
Q ss_pred HHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1005 RLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1005 RAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
||+++++++++||||||+||.|+|+.|.+.+.+ +++|||+||||+..++-.|+++++++|.
T Consensus 469 RAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~ 531 (559)
T COG4988 469 RALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGR 531 (559)
T ss_pred HHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCc
Confidence 999999999999999999999999998877654 5899999999999999999999998775
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=553.52 Aligned_cols=193 Identities=23% Similarity=0.266 Sum_probs=151.4
Q ss_pred CceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEE
Q 001446 835 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 914 (1075)
Q Consensus 835 g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~V 914 (1075)
.-|+++||++.|++.+++|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.+++. .+|+|+
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~---------~~igyv 577 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK---------VRMAVF 577 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc---------eeEEEE
Confidence 35999999999976667999999999999999999999999999999999999999999998752 469999
Q ss_pred cCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchh-hhhhhccCCccccccccCC
Q 001446 915 PQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY-LLEREEVGWDANLNWEDIL 993 (1075)
Q Consensus 915 pQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~-~i~~~~~Gldt~~~~g~~L 993 (1075)
||++. ..-++.+|.... .... .+...++.+.++|+.+++.. .... ....|
T Consensus 578 ~Q~~~-~~l~~~~~~~~~---------~~~~---------~~~~~~~~i~~~L~~~gl~~~~~~~----------~~~~L 628 (718)
T PLN03073 578 SQHHV-DGLDLSSNPLLY---------MMRC---------FPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTL 628 (718)
T ss_pred ecccc-ccCCcchhHHHH---------HHHh---------cCCCCHHHHHHHHHHCCCChHHhcC----------Ccccc
Confidence 99973 222444443210 0000 01122455677788877742 1111 13579
Q ss_pred ChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHhcCceEEEecCCCCchh-hccceEEEEcCC
Q 001446 994 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIP-FHSLELRLIDGE 1065 (1075)
Q Consensus 994 SgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~~~~TvI~IaHRls~i~-~~~~~l~l~~g~ 1065 (1075)
|||||||++||||++++|++|||||||++||.++...+.+.+...+.|+|+|+|++..+. +.|+++.|.+|.
T Consensus 629 SgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~ 701 (718)
T PLN03073 629 SGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGK 701 (718)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999988887777654559999999998665 789999997653
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=486.45 Aligned_cols=260 Identities=22% Similarity=0.297 Sum_probs=217.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCCcccccc
Q 001446 775 VVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLAR 854 (1075)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~~vL~ 854 (1075)
.+.+...+++-+...+.++.+...-.++.+++.+.+.+.... ...|+-|| ...|.|.|+||+|.|...+|+|+
T Consensus 208 ll~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~-----pda~~L~~--~~~g~v~F~~V~F~y~~~r~iL~ 280 (497)
T COG5265 208 LLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDA-----PDAPPLWP--VRLGAVAFINVSFAYDPRRPILN 280 (497)
T ss_pred HHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccC-----CCCccccc--cccceEEEEEEEeeccccchhhc
Confidence 334555566666667777777667777777776654433221 12234565 34789999999999988899999
Q ss_pred ccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCC
Q 001446 855 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYP 932 (1075)
Q Consensus 855 ~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p 932 (1075)
|+||++++|+++||||+||+||||+.++|+||||+++|.|.|||+||+.+ +.+|+.||+||||.+||++|+..|+.|+
T Consensus 281 ~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~yg 360 (497)
T COG5265 281 GISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYG 360 (497)
T ss_pred CccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999987 5678889999999999999999999995
Q ss_pred C--ChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhc
Q 001446 933 L--SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFH 1009 (1075)
Q Consensus 933 ~--~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr 1009 (1075)
. .++++.+.|+ +...+.++++.+|+||||.+ +.|--||||||||+||||++|+
T Consensus 361 r~~at~eev~aaa------------------------~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk 416 (497)
T COG5265 361 RPDATAEEVGAAA------------------------EAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK 416 (497)
T ss_pred CccccHHHHHHHH------------------------HHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc
Confidence 4 3344444444 44445566777789999976 6778899999999999999999
Q ss_pred CCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1010 KPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1010 ~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
+|+||+|||||||||..||++||..+++ .|+|.++|||||+|+-.+|.+++|++|.
T Consensus 417 ~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~ 474 (497)
T COG5265 417 NPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGR 474 (497)
T ss_pred CCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCE
Confidence 9999999999999999999999998865 6999999999999999999999998875
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=547.89 Aligned_cols=456 Identities=16% Similarity=0.206 Sum_probs=308.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHH-------
Q 001446 552 APSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSV------- 624 (1075)
Q Consensus 552 ~~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~------- 624 (1075)
.+....+..++...+|..+++++++. +..||+ ....++..+|+ +|++.+...+...+..++..++
T Consensus 200 ~~~~~~~~~~~~~~l~~~~~~~l~~l---~~~~f~----~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~ 271 (694)
T TIGR01846 200 TYLFAHLTSRIDVELGARLYRHLLGL---PLGYFE----SRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLA 271 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHcC----CCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555666666666542 234444 23456778898 6998888776554433332222
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHH
Q 001446 625 DILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMI 704 (1075)
Q Consensus 625 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~ 704 (1075)
.+++++|.++++. + +.+++...+.....+.......+..+..+.......+...+.++|+.++.+..+.+.+
T Consensus 272 ~l~~~~~~l~li~-------l-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~ 343 (694)
T TIGR01846 272 VMFFYSPTLTGVV-------I-GSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRW 343 (694)
T ss_pred HHHHHHHHHHHHH-------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHH
Confidence 2234455544332 1 1111111111111122222222323333334444455566789999999988887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001446 705 ESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFG 784 (1075)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~ 784 (1075)
.+.+.+..+...+..+...+...+..++... ...+.++++....... ..+.|.+.. +.........++.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~il~~g~~lv~~g--~it~G~lia----~~~l~~~~~~pl~ 412 (694)
T TIGR01846 344 DRQLAAYVAASFRVTNLGNIAGQAIELIQKL-----TFAILLWFGAHLVIGG--ALSPGQLVA----FNMLAGRVTQPVL 412 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhHHHHHHHHHcC--CCCHHHHHH----HHHHHHHHHHHHH
Confidence 7776666655443332222222222222111 1111222222111000 012233222 2234455667888
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCC-ccccccccceeecCC
Q 001446 785 DILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTFEIVPG 863 (1075)
Q Consensus 785 ~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL~~vs~~I~~G 863 (1075)
.+......+.+...+.+|+.++.+.+++.+.. .. ...+ ...|.|+|+||+|.||+ .+++|+|+||+|+||
T Consensus 413 ~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-----~~--~~~~--~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G 483 (694)
T TIGR01846 413 RLAQLWQDFQQTGIALERLGDILNSPTEPRSA-----GL--AALP--ELRGAITFENIRFRYAPDSPEVLSNLNLDIKPG 483 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-----CC--CCCC--CCCCeEEEEEEEEEcCCCCccccccceEEECCC
Confidence 88888999999999999999998654322110 00 0111 12578999999999975 467999999999999
Q ss_pred CeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHH
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELR 941 (1075)
Q Consensus 864 e~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~ 941 (1075)
|++||||+||||||||+++|.|+|+|++|+|.+||+|++++ +.+|+++++|||||++|+|||||||.++..
T Consensus 484 ~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~------- 556 (694)
T TIGR01846 484 EFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP------- 556 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC-------
Confidence 99999999999999999999999999999999999999987 357888999999999999999999987432
Q ss_pred HhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEeeccC
Q 001446 942 ALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1020 (1075)
Q Consensus 942 a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEAT 1020 (1075)
+.++++++++++.++++++++++|+||||.+ +.|.+||||||||+|||||++++|+||||||||
T Consensus 557 ---------------~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpt 621 (694)
T TIGR01846 557 ---------------GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEAT 621 (694)
T ss_pred ---------------CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 1235667777788888888999999999986 578899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1021 NATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1021 SalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
|+||.++|+.+.+.+++ .++|+|+||||+++++..|+++++++|.
T Consensus 622 s~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~ 668 (694)
T TIGR01846 622 SALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQ 668 (694)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCE
Confidence 99999999999887754 5899999999999999999999997764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=539.81 Aligned_cols=456 Identities=17% Similarity=0.218 Sum_probs=312.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHHH-------
Q 001446 553 PSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVD------- 625 (1075)
Q Consensus 553 ~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~~------- 625 (1075)
+....+..++...+|..+++++++. +..+|+ ....++..+|+++|++.+...+...+..++..++.
T Consensus 80 ~~~~~~~~~~~~~lr~~l~~~l~~~---~~~~~~----~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 152 (576)
T TIGR02204 80 YLVTWLGERVVADIRRAVFAHLISL---SPSFFD----KNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIM 152 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHc----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555556666666666643 223333 23346788999999999977765544443332222
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHHH
Q 001446 626 ILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIE 705 (1075)
Q Consensus 626 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~ 705 (1075)
++++.|.++++. + +..++.........+.......+.++..+.+.....+...+.++++.++.++.+...+.
T Consensus 153 ~~~~~~~l~~~~-------l-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~ 224 (576)
T TIGR02204 153 MFITSPKLTSLV-------L-LAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFG 224 (576)
T ss_pred HHHHhHHHHHHH-------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHH
Confidence 223344443321 1 11111111122222333344444455555566666777778899999999888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhh--cccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001446 706 SRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEH--KGDRALVSTQGELAHALRFLASVVSQSFLAF 783 (1075)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~ 783 (1075)
+.+.+..+...+......+...+..++.. +..++.++++... .+. .+.|.+.. +..+......++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~v~~g~----lt~g~~~~----~~~~~~~~~~pl 291 (576)
T TIGR02204 225 GAVEKAYEAARQRIRTRALLTAIVIVLVF-----GAIVGVLWVGAHDVIAGK----MSAGTLGQ----FVFYAVMVAGSI 291 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCC----CCHHHHHH----HHHHHHHHHHHH
Confidence 76666665443332222111111111110 1111111111111 111 11222222 222334456678
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCCc--cccccccceeec
Q 001446 784 GDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ--KLLARQLTFEIV 861 (1075)
Q Consensus 784 ~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~--~~vL~~vs~~I~ 861 (1075)
..+......+.+...+.+|+.++.+.+++.+... ...+.+++ ..+.|+|+||+|.||+. +++|+|+||+|+
T Consensus 292 ~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~----~~~~~~~~---~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~ 364 (576)
T TIGR02204 292 GTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA----HPKTLPVP---LRGEIEFEQVNFAYPARPDQPALDGLNLTVR 364 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC----CCccCCcC---CCceEEEEEEEEECCCCCCCccccceeEEec
Confidence 8888888888999999999999876432211110 00011122 24679999999999853 689999999999
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHH
Q 001446 862 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAE 939 (1075)
Q Consensus 862 ~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~ 939 (1075)
|||+++|+|+||||||||+++|.|+|+|++|+|.+||+|++++ ..+|++|+||||||++|+|||||||.++.+.
T Consensus 365 ~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~---- 440 (576)
T TIGR02204 365 PGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPD---- 440 (576)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCC----
Confidence 9999999999999999999999999999999999999999987 3467789999999999999999999976421
Q ss_pred HHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEeec
Q 001446 940 LRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDE 1018 (1075)
Q Consensus 940 ~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDE 1018 (1075)
..|++++++++.+++.++++++|+|+||.+ ++|.+||||||||+|||||++++|+||||||
T Consensus 441 ------------------~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDE 502 (576)
T TIGR02204 441 ------------------ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDE 502 (576)
T ss_pred ------------------CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeC
Confidence 235667788888999889999999999986 5788999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1019 CTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1019 ATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
|||+||.++++.+.+.++. +++|+|+||||++.++.+|+++++++|.
T Consensus 503 pts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~ 551 (576)
T TIGR02204 503 ATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGR 551 (576)
T ss_pred cccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCE
Confidence 9999999999988877654 5899999999999999999999998775
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-57 Score=538.57 Aligned_cols=182 Identities=25% Similarity=0.286 Sum_probs=152.0
Q ss_pred EEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEE-----------eCCcCc-----c---
Q 001446 187 VKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA-----------KPGVGS-----D--- 247 (1075)
Q Consensus 187 v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~-----------~~~~~~-----~--- 247 (1075)
+++.|..+..+|++++ .+++|++++|+||||||||||+|+|+|+++|++|+|. ++|.+- .
T Consensus 79 ~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~ 157 (590)
T PRK13409 79 PVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYN 157 (590)
T ss_pred ceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhc
Confidence 6677854457999999 9999999999999999999999999999999999997 777541 1
Q ss_pred ccccEEEEc----CCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHH
Q 001446 248 LNKEIFYVP----QRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 323 (1075)
Q Consensus 248 ~~~~i~~v~----Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqR 323 (1075)
.+.++++.+ |.|.++.+|++||+... ...+++.++++.+++.+..++.+ .+||||||||
T Consensus 158 ~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~--------~~LSgGe~qr 220 (590)
T PRK13409 158 GEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDI--------SELSGGELQR 220 (590)
T ss_pred cCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHH
Confidence 112345444 45666678999998642 12346788999999988777765 6899999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 324 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 324 l~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
++|||||+++|+++||||||++||+....++.+.+++. |+|+|+||||++.+. .+|+++++.+
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999998877654 899999999999885 6899999964
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-55 Score=509.79 Aligned_cols=191 Identities=25% Similarity=0.362 Sum_probs=156.5
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCccccccEEEEcCCCC
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 260 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~ 260 (1075)
.|.++|+++.| +++++|+|+||++.+|+++||||+||||||||||+|+|...|++|+|..++ .-+++|++|++.
T Consensus 3 ~i~~~~ls~~~-g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~-----~~~v~~l~Q~~~ 76 (530)
T COG0488 3 MITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK-----GLRVGYLSQEPP 76 (530)
T ss_pred eEEEeeeEEee-CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC-----CceEEEeCCCCC
Confidence 58999999999 578999999999999999999999999999999999999999999999875 237999999998
Q ss_pred CCcC-CHHHHhcCCCCCCccc------------C------------------cCCHHHHHHHHHHcCChhHHhcCCCCcc
Q 001446 261 TAVG-TLRDQLIYPLTSDQEV------------E------------------PLTHGGMVELLKNVDLEYLLDRYPPEKE 309 (1075)
Q Consensus 261 ~~~~-tv~~ni~~~~~~~~~~------------~------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 309 (1075)
.... ||.+.+..+....... . ...+.++..++..+++.+. ++
T Consensus 77 ~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~------ 149 (530)
T COG0488 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DR------ 149 (530)
T ss_pred cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cC------
Confidence 8765 9999887654210000 0 0011233344444444433 22
Q ss_pred cCCCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 310 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 310 ~~~g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
...+||||||.|++|||||+.+||+|||||||++||.++..++.+.|++...|+|+||||..++. .|++|+.++.
T Consensus 150 --~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~ 225 (530)
T COG0488 150 --PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDR 225 (530)
T ss_pred --chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecC
Confidence 13689999999999999999999999999999999999999999999876449999999999996 6899999985
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=526.60 Aligned_cols=463 Identities=15% Similarity=0.157 Sum_probs=304.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhccC-CceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHHHH--
Q 001446 550 FIAPSIRHLTARLALGWRIRMTQHLLKSYLRK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDI-- 626 (1075)
Q Consensus 550 ~~~~~~~~~~~~~~~~~r~~l~~~ll~~~l~~-~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~~~-- 626 (1075)
+..+...++..+...+.+..+..++++..++. ..||+ ..+.++..+|+++|++.+...+...+..++..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~----~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~ 146 (585)
T TIGR01192 71 IAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQ----QRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFL 146 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555554445555555443 34554 234577889999999998766655544433333222
Q ss_pred -----HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHH
Q 001446 627 -----LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREK 701 (1075)
Q Consensus 627 -----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~ 701 (1075)
++++|.++++. ++ .+++...+...+.+.......+.++..+.+.....+...+.++|+.|+.+..+.
T Consensus 147 ~~~~l~~~~~~l~li~-------l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~ 218 (585)
T TIGR01192 147 LIPTAFAMDWRLSIVL-------MV-LGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAET 218 (585)
T ss_pred HHHHHHHHHHHHHHHH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHH
Confidence 34455554432 11 111111111222222222222222222333334445556788999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHH
Q 001446 702 AMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFL 781 (1075)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~ 781 (1075)
+.+.+..++..+...+..+...+...+..++.. +...+.++++....... ..+.|.+..+ ..+...+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~g~~~v~~g--~it~g~l~a~----~~~~~~l~~ 287 (585)
T TIGR01192 219 SALKQFTNNLLSAQYPVLDWWALASGLNRMAST-----ISMMCILVIGTVLVIKG--ELSVGEVIAF----IGFANLLIG 287 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcC--CCCHHHHHHH----HHHHHHHHH
Confidence 777666666554443333222222222111111 11111122221111000 0112332222 223334556
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCCccccccccceeec
Q 001446 782 AFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIV 861 (1075)
Q Consensus 782 ~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~~vL~~vs~~I~ 861 (1075)
++..+......+.+...+.+|+.++.+.+++.++. ..+..++ ...+.|+|+||+|.||+.+++|+|+||+|+
T Consensus 288 ~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~------~~~~~~~--~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~ 359 (585)
T TIGR01192 288 RLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP------ADAPELP--NVKGAVEFRHITFEFANSSQGVFDVSFEAK 359 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC------ccCCCCC--CCCCeEEEEEEEEECCCCCccccceeEEEc
Confidence 77777777777888888899998876543221110 0001122 124679999999999876679999999999
Q ss_pred CCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHH
Q 001446 862 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAE 939 (1075)
Q Consensus 862 ~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~ 939 (1075)
+||++|||||||||||||+++|.|+|+|++|+|.+||.|+++++ .+|.++++|||||++|++|+||||.++...
T Consensus 360 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~---- 435 (585)
T TIGR01192 360 AGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREG---- 435 (585)
T ss_pred CCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCC----
Confidence 99999999999999999999999999999999999999998873 467789999999999999999999875321
Q ss_pred HHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEeec
Q 001446 940 LRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDE 1018 (1075)
Q Consensus 940 ~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDE 1018 (1075)
..|++++++++.+++++++..+|+|+||.+ ++|.+|||||||||+|||||+++|+||||||
T Consensus 436 ------------------~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDE 497 (585)
T TIGR01192 436 ------------------ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDE 497 (585)
T ss_pred ------------------CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 124455666677777778888899999976 5788999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1019 CTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1019 ATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
|||+||.++++.+.+.+.+ .++|+|+||||+++++.+|+++++++|.
T Consensus 498 pts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~ 546 (585)
T TIGR01192 498 ATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGR 546 (585)
T ss_pred CccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCE
Confidence 9999999999999887754 5899999999999999999999998775
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-55 Score=528.36 Aligned_cols=450 Identities=16% Similarity=0.182 Sum_probs=298.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHHH-------H-HHH
Q 001446 558 LTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVD-------I-LWF 629 (1075)
Q Consensus 558 ~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~~-------~-~~~ 629 (1075)
...+...++|..+++++++. +..+|+ ....+++.+|+++|++.+.......+..++..++. + +++
T Consensus 63 ~~~~~~~~lr~~l~~~ll~~---~~~~~~----~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (569)
T PRK10789 63 ASYQLAVELREDFYRQLSRQ---HPEFYL----RHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQI 135 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcC---CHHHHc----CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666542 223443 23456788999999999875544333333322111 1 234
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHHHHHHH
Q 001446 630 TWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFR 709 (1075)
Q Consensus 630 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~ 709 (1075)
+|.++++. ++.+++...+.....++......+.++..+.+.....+...+.++++.|+.++.+.+.+.+...
T Consensus 136 ~~~l~li~--------l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~ 207 (569)
T PRK10789 136 SWQLTLLA--------LLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAE 207 (569)
T ss_pred hHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHH
Confidence 55544332 1111111111222222222222233333333434445555678899999998887777766665
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 710 ELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILEL 789 (1075)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~ 789 (1075)
+..+...+................ .+...+.++++........ .+.|.+..+ ..+......++..+...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~g~~lv~~g~--lt~g~l~a~----~~~~~~~~~pl~~l~~~ 276 (569)
T PRK10789 208 DTGKKNMRVARIDARFDPTIYIAI-----GMANLLAIGGGSWMVVNGS--LTLGQLTSF----VMYLGLMIWPMLALAWM 276 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCC--cCHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 554443332221111111111111 0111111222211110000 112332222 22333455677777778
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCC-ccccccccceeecCCCeEEE
Q 001446 790 HRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTFEIVPGKSLLV 868 (1075)
Q Consensus 790 ~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL~~vs~~I~~Ge~vaI 868 (1075)
...+.....+.+|+.++.+.+++.+.. .. ..+ ...+.|+|+||+|.||+ .+++|+|+||+|+|||+++|
T Consensus 277 ~~~~~~~~~a~~ri~~ll~~~~~~~~~----~~----~~~--~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~i 346 (569)
T PRK10789 277 FNIVERGSAAYSRIRAMLAEAPVVKDG----SE----PVP--EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGI 346 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccCC----CC----CCC--CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEE
Confidence 888888889999999987643221110 00 001 12468999999999986 46899999999999999999
Q ss_pred EcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhc
Q 001446 869 TGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLH 946 (1075)
Q Consensus 869 vG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~ 946 (1075)
|||||||||||+++|.|+|+|++|+|.+||.|++++ ..+|+++++|||+|++|+||||+||.++...
T Consensus 347 vG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~----------- 415 (569)
T PRK10789 347 CGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPD----------- 415 (569)
T ss_pred ECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCC-----------
Confidence 999999999999999999999999999999999877 3567889999999999999999999875321
Q ss_pred CCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCH
Q 001446 947 GKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSV 1025 (1075)
Q Consensus 947 ~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~ 1025 (1075)
..|++++++++.+++++.+.++|+|+||.+ ++|.+||||||||+|||||++++|+|||||||||+||.
T Consensus 416 -----------~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~ 484 (569)
T PRK10789 416 -----------ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDG 484 (569)
T ss_pred -----------CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCH
Confidence 235566677778888888888899999986 57889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1026 DVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1026 ~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
++++.+.+.++. .++|+|+|+||+++++.+|+++++++|.
T Consensus 485 ~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~ 526 (569)
T PRK10789 485 RTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGH 526 (569)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCE
Confidence 999998887754 5899999999999999999999997764
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-54 Score=558.73 Aligned_cols=207 Identities=22% Similarity=0.273 Sum_probs=159.3
Q ss_pred ceEEeeeeeeCCC------------ccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCC--CCCeEecCCCCC
Q 001446 836 SISFSKLDIITPS------------QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPV--VSGSLTKPSQHI 901 (1075)
Q Consensus 836 ~I~f~~V~~~yp~------------~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~--~sG~I~idg~di 901 (1075)
.++|+||+++.+. ...+|+|||++|+|||.+||+||||||||||+++|.|..++ .+|+|.++|.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6899999997541 23699999999999999999999999999999999999874 689999999887
Q ss_pred ccccCCcCcEEEEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhc
Q 001446 902 DEEAGSGCGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREE 980 (1075)
Q Consensus 902 ~~~~~~r~~i~~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~ 980 (1075)
+... .|..++||+|++.+++ .|++|||.++.. ++. ..... ....++.+.++++.++|.+..
T Consensus 947 ~~~~-~~~~igyv~Q~d~~~~~lTV~E~L~~~a~--------lr~---~~~~~--~~~~~~~v~~vl~~lgL~~~~---- 1008 (1470)
T PLN03140 947 KQET-FARISGYCEQNDIHSPQVTVRESLIYSAF--------LRL---PKEVS--KEEKMMFVDEVMELVELDNLK---- 1008 (1470)
T ss_pred ChHH-hhhheEEEccccccCCCCcHHHHHHHHHH--------hCC---CCCCC--HHHHHHHHHHHHHHCCChhHh----
Confidence 5432 3456999999998776 599999975310 000 00000 000123456677778775432
Q ss_pred cCCccccc--cccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCc--hh
Q 001446 981 VGWDANLN--WEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPAL--IP 1053 (1075)
Q Consensus 981 ~Gldt~~~--~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~--i~ 1053 (1075)
|+.+. ....||||||||++|||+|+.+|+||+||||||+||..+...+.+.+++ .|+|||+++|+++. .+
T Consensus 1009 ---~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~ 1085 (1470)
T PLN03140 1009 ---DAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1085 (1470)
T ss_pred ---CCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHH
Confidence 33321 1246999999999999999999999999999999999998887776643 58999999999984 57
Q ss_pred hccceEEEEc
Q 001446 1054 FHSLELRLID 1063 (1075)
Q Consensus 1054 ~~~~~l~l~~ 1063 (1075)
..|+++.|.+
T Consensus 1086 ~~D~vllL~~ 1095 (1470)
T PLN03140 1086 AFDELLLMKR 1095 (1470)
T ss_pred hCCEEEEEcC
Confidence 8899999964
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=515.50 Aligned_cols=448 Identities=20% Similarity=0.236 Sum_probs=296.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHH-HhhhhhHhH------HHH
Q 001446 554 SIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSG-LVTGMVKPS------VDI 626 (1075)
Q Consensus 554 ~~~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~-~~~~~i~~~------~~~ 626 (1075)
....+..+.....|..+++++++..+. ..+...+++++|++.+...+.. .+..++..+ +.+
T Consensus 69 ~~~~~~~~~~~~lr~~~~~~ll~~~~~------------~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l 136 (544)
T TIGR01842 69 VLVRIGEKLDGALNQPIFAASFSATLR------------RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVC 136 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccc------------CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 333344455555566666665543211 1123467889999998776544 222222221 122
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHHHH
Q 001446 627 LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIES 706 (1075)
Q Consensus 627 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~~ 706 (1075)
+++.|.++++. ++..++. ........+.......+.++..+.......+...+.++++.|+.++.+.+.+.+
T Consensus 137 ~~~~~~l~li~-------l~~~~l~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~ 208 (544)
T TIGR01842 137 FLLHPWIGILA-------LGGAVVL-VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGR 208 (544)
T ss_pred HHHhhHHHHHH-------HHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHH
Confidence 33444444321 1111111 111111111111222223333333444445556678999999998887777766
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 707 RFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDI 786 (1075)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~ 786 (1075)
.+++..+...+.............++.. +...+.++++....... ..+.|.+..+ ..+......++..+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~g~~l~~~g--~it~g~l~a~----~~~~~~~~~pl~~l 277 (544)
T TIGR01842 209 FHSKYLSAQSAASDRAGMLSNLSKYFRI-----VLQSLVLGLGAYLAIDG--EITPGMMIAG----SILVGRALAPIDGA 277 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcC--CCCHHHHHHH----HHHHHHHHHHHHHH
Confidence 6666555443322222111111111110 01111122221111000 0122333222 22334556788888
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCC-ccccccccceeecCCCe
Q 001446 787 LELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQLTFEIVPGKS 865 (1075)
Q Consensus 787 ~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL~~vs~~I~~Ge~ 865 (1075)
......+.+...+.+|+.++.+.+++.++ .. ..+ ...+.|+|+||+|+||+ .+++|+|+||+|+|||+
T Consensus 278 ~~~~~~~~~~~~~~~ri~~~l~~~~~~~~-----~~----~~~--~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~ 346 (544)
T TIGR01842 278 IGGWKQFSGARQAYKRLNELLANYPSRDP-----AM----PLP--EPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEA 346 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccC-----CC----CCC--CCCCeEEEEEEEEEcCCCCccccccceEEEcCCCE
Confidence 88888889999999999999864322111 00 011 12467999999999986 46899999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHh
Q 001446 866 LLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRAL 943 (1075)
Q Consensus 866 vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~ 943 (1075)
+|||||||||||||+++|.|+|+|++|+|.+||+|+++++ .+|+++++|||||++|+||+||||.+...
T Consensus 347 ~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~--------- 417 (544)
T TIGR01842 347 LAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGE--------- 417 (544)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCC---------
Confidence 9999999999999999999999999999999999998873 46778999999999999999999985321
Q ss_pred hhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCC
Q 001446 944 KLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA 1022 (1075)
Q Consensus 944 ~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSa 1022 (1075)
+..+++++++++.++++++++.+|+|+||.. ++|.+||||||||+|||||++++|+|||||||||+
T Consensus 418 -------------~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~ 484 (544)
T TIGR01842 418 -------------NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSN 484 (544)
T ss_pred -------------CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 0234556677778888888888999999976 57899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHh---cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1023 TSVDVEEQLYRLAKD---MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1023 lD~~~e~~i~~~~~~---~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
||.++++.+.+.+.+ .++|+|+|+||+++++.+|+++++++|.
T Consensus 485 LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~ 530 (544)
T TIGR01842 485 LDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGR 530 (544)
T ss_pred cCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCE
Confidence 999999998887654 4799999999999999999999997765
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-55 Score=484.69 Aligned_cols=389 Identities=45% Similarity=0.788 Sum_probs=333.5
Q ss_pred ccccCcchhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 2 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKY 81 (1075)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1075)
.|.+.+++++++.+|+++|+|||+.|+++|+|+|+||||+|+..|+...+++|+++.++.++.+...+|++++++++- |
T Consensus 243 ~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~-Y 321 (659)
T KOG0060|consen 243 NKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFD-Y 321 (659)
T ss_pred HhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 577889999999999999999999999999999999999999999999999999999999999999999999999887 9
Q ss_pred HHHHHHHHHHHhhhhccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 001446 82 LGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELS 161 (1075)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~ 161 (1075)
++.+++++++..|+|.++.. +..+ ...+...+.....+++.++++++.++..-..+.++.++.+|+.++++...+..
T Consensus 322 lg~ilsy~vi~~p~Fs~h~y-~~~s--~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~ 398 (659)
T KOG0060|consen 322 LGGILSYVVIAIPFFSGHVY-DDLS--PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLS 398 (659)
T ss_pred HHhhheeeEEeeeeeccccc-CCcC--HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhc
Confidence 99999999999999998743 3322 23455566666778888899999999999999999999999999876654433
Q ss_pred ccCCC---------------CCCCCCCCCCCCCccEEEEeEEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCcchHHHHH
Q 001446 162 IEDKS---------------PQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLF 225 (1075)
Q Consensus 162 ~~~~~---------------~~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl 225 (1075)
....+ ....+..+..+.++.|++++|++..|+ +..+++|+||+|+.|+.+.|+||||||||+|+
T Consensus 399 ~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLl 478 (659)
T KOG0060|consen 399 SGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLL 478 (659)
T ss_pred cCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHH
Confidence 21100 001111222344578999999999998 66788899999999999999999999999999
Q ss_pred HHHhCCCCCCccEEEeCCcCccccccEEEEcCCCCCCcCCHHHHhcCCCCCCc-ccCcCCHHHHHHHHHHcCChhHHhcC
Q 001446 226 RVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLLDRY 304 (1075)
Q Consensus 226 ~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~ 304 (1075)
|.+.|+|+..+|++..+.... .+.+.|+||.||+..||+||++.||..... ..+..+++++.+.|+.++|.++.++.
T Consensus 479 RvlggLWp~~~G~l~k~~~~~--~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ 556 (659)
T KOG0060|consen 479 RVLGGLWPSTGGKLTKPTDGG--PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLERE 556 (659)
T ss_pred HHHhcccccCCCeEEecccCC--CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHh
Confidence 999999999999998865321 145999999999999999999999965433 23456788999999999999998885
Q ss_pred CC-C--cccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChhhHhhCCeE
Q 001446 305 PP-E--KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVV 381 (1075)
Q Consensus 305 ~~-~--~~~~~g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~t~i~vtH~~~~~~~~d~i 381 (1075)
.. + .+.+|...||+|||||+++||.+|++|++.||||.|||+|.+.|..+++.+++.|+|.|.|+||.++.++||.+
T Consensus 557 ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfHd~~ 636 (659)
T KOG0060|consen 557 GGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFHDYV 636 (659)
T ss_pred CCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhhhEE
Confidence 42 2 23478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcEEEecCC
Q 001446 382 LSLDGEGEWRVHDKR 396 (1075)
Q Consensus 382 ~~l~~~g~~~~~~~~ 396 (1075)
+.|++.|+|.++.-+
T Consensus 637 L~~~g~g~w~~~~I~ 651 (659)
T KOG0060|consen 637 LRMDGRGSWRFHQID 651 (659)
T ss_pred EEecCCCceEEEEec
Confidence 999999999887544
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-55 Score=497.86 Aligned_cols=370 Identities=24% Similarity=0.310 Sum_probs=282.0
Q ss_pred ccCcchhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 4 NFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLG 83 (1075)
Q Consensus 4 ~~~~~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1075)
.++....++..+.|+.-|+....-.....++.+|+.|++|+.|.+++.+..++..+-. ++......+..+....++
T Consensus 307 ~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~----~k~a~a~~~f~~~~~~~~ 382 (716)
T KOG0058|consen 307 IYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLS----KKEAVAYGIFFGSTNLLG 382 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHH----HHHHHHhhHhHhHHHHHH
Confidence 3444555566566666666655555666666669999999999986666655544332 222221111111111111
Q ss_pred HHHHHHHHHhhhhccccccCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 001446 84 ATVAVILIIEPFFAGNLKPDT-STLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSI 162 (1075)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~ 162 (1075)
.. ..+...|+++++..++ .+.|.. .+.+.+ -..+..++..+...+..+.+..++..|++++++..+....
T Consensus 383 ~~---~~~siL~~Gg~Lv~~g~mt~g~L--~sFllY----~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~ 453 (716)
T KOG0058|consen 383 NL---AVLSILFYGGHLVLTGSLTSGAL--SSFLLY----QVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPL 453 (716)
T ss_pred hH---HHHHHHHhccchhhcCccchhHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCC
Confidence 11 1222336777776543 334432 222222 2234456677778888899999999999999998776644
Q ss_pred cCCCCCCCCCCCCCCCCccEEEEeEEEEcCCC--CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEE
Q 001446 163 EDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240 (1075)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~--~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~ 240 (1075)
. ... .+..-.+.|+|+||+|.||.. .++|+|+||+|+|||++|+|||||+||||+.++|.++|+|++|+|.
T Consensus 454 ~-G~~------~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il 526 (716)
T KOG0058|consen 454 T-GTL------APDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526 (716)
T ss_pred C-Ccc------ccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 2 110 011235689999999999964 4699999999999999999999999999999999999999999999
Q ss_pred eCCcC------ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---C
Q 001446 241 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---N 311 (1075)
Q Consensus 241 ~~~~~------~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~ 311 (1075)
+||.+ ..+|++||+|.|+|.+|++||+|||.||.. ..+++++..+.+.++.++++..+|++.++ +
T Consensus 527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~------~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGE 600 (716)
T KOG0058|consen 527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD------NATDEEIEAAAKMANAHEFITNFPDGYNTVVGE 600 (716)
T ss_pred ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC------CCCHHHHHHHHHHhChHHHHHhCccccccccCC
Confidence 99986 346889999999999999999999999975 45788999999999999999999998765 5
Q ss_pred CCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCCCc
Q 001446 312 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGE 389 (1075)
Q Consensus 312 ~g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~g~ 389 (1075)
.|.+|||||||||||||||++||.||||||+|||||.+++..+.+.+.+ .++|||+|+|+++.++.+|+|+++++ |
T Consensus 601 kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~--G 678 (716)
T KOG0058|consen 601 KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDK--G 678 (716)
T ss_pred ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcC--C
Confidence 6889999999999999999999999999999999999999999999864 48999999999999999999999986 3
Q ss_pred EEEecCCCCccc
Q 001446 390 WRVHDKRDGSSV 401 (1075)
Q Consensus 390 ~~~~~~~~~~~~ 401 (1075)
..++.+.|++++
T Consensus 679 ~V~E~G~h~eLl 690 (716)
T KOG0058|consen 679 RVVEMGTHDELL 690 (716)
T ss_pred eEEecccHHHHh
Confidence 456666666554
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-53 Score=508.97 Aligned_cols=461 Identities=13% Similarity=0.112 Sum_probs=289.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhH---
Q 001446 547 ASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPS--- 623 (1075)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~--- 623 (1075)
+..+..+....+..+...++|.++++++++. +..||+ ....+++.+|+++|++.+...+.. +..++..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~---~~~~~~----~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~ 140 (555)
T TIGR01194 69 FRIGADIFPAYAGMHIIANLRIALCEKILGA---PIEEID----RRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIF 140 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHH----hcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHH
Confidence 3334444455556666677787777777652 223443 234577899999999998876543 22222222
Q ss_pred ----HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHH
Q 001446 624 ----VDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAR 699 (1075)
Q Consensus 624 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~ 699 (1075)
+.+++++|.++++. + +.+++...+.....+.......+.++..+.+.....+...+.++++.|+.++.
T Consensus 141 ~~~~~~l~~~~~~L~li~-------l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~ 212 (555)
T TIGR01194 141 FFCIAYLAYLSVPMFAIT-------I-SAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRL 212 (555)
T ss_pred HHHHHHHHHHhHHHHHHH-------H-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHH
Confidence 22234455554432 1 11111111111111111122222233333344444455556788888876321
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHH
Q 001446 700 EKAMIESRFRELLEHSLLLL-KKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQ 778 (1075)
Q Consensus 700 e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~ 778 (1075)
. ...+++.+..+...+.. ...........+. .....+..++.++++... +. .+.|.+..+ ..+...
T Consensus 213 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~----~t~g~l~a~----~~~~~~ 279 (555)
T TIGR01194 213 S--FAHGAIQESANNIADLHIIEILIFIAAENFG--QLLFFLLIGCALFAAAMF-AS----IDAAAISAF----VLALLY 279 (555)
T ss_pred H--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh-cC----CCHHHHHHH----HHHHHH
Confidence 1 11223333332222111 1111111111100 000111112222222111 10 122332222 223345
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCCc----ccccc
Q 001446 779 SFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ----KLLAR 854 (1075)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~----~~vL~ 854 (1075)
+..++..+......+.....+++|+.++.+.++++++............-+.....+.|+|+||+|+||+. +++|+
T Consensus 280 l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~ 359 (555)
T TIGR01194 280 IKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALG 359 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceec
Confidence 56788888888899999999999999997643221111000000000000001124679999999999852 36999
Q ss_pred ccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEEEcCCCCCCCcchhhhhcCC
Q 001446 855 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYVPQRPYTCLGTLRDQIIYP 932 (1075)
Q Consensus 855 ~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~VpQdP~Lf~gTir~NL~~p 932 (1075)
|+||+|++||++|||||||||||||+++|.|+|+|++|+|.+||.|+++++ .+|.++++|||||++|++|+++|+. |
T Consensus 360 ~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~-~ 438 (555)
T TIGR01194 360 PIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEG-E 438 (555)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccc-c
Confidence 999999999999999999999999999999999999999999999999873 4677899999999999999999963 3
Q ss_pred CChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCChhHHHHHHHHHHhhcCCC
Q 001446 933 LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPK 1012 (1075)
Q Consensus 933 ~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ 1012 (1075)
... +++++++++.+++++.++.+|+||||. .+||||||||||||||++++|+
T Consensus 439 ~~~------------------------~~~~~~~~~~~~l~~~~~~lp~g~~t~----~~LSgGq~qRlalaRall~~~~ 490 (555)
T TIGR01194 439 HAS------------------------LDNAQQYLQRLEIADKVKIEDGGFSTT----TALSTGQQKRLALICAWLEDRP 490 (555)
T ss_pred chh------------------------HHHHHHHHHHcCCchhhcccccccCCc----ccCCHHHHHHHHHHHHHHcCCC
Confidence 222 344566777888888888889999985 5699999999999999999999
Q ss_pred EeEeeccCCCCCHHHHHHHHHHH-H---hcCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1013 FGILDECTNATSVDVEEQLYRLA-K---DMGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1013 ILiLDEATSalD~~~e~~i~~~~-~---~~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
|||||||||+||+++++.+++.+ + ..++|+|+||||+++++..|+++++++|.
T Consensus 491 ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~ 547 (555)
T TIGR01194 491 ILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGC 547 (555)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCE
Confidence 99999999999999999887643 2 35899999999999999999999998764
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-53 Score=486.95 Aligned_cols=364 Identities=31% Similarity=0.530 Sum_probs=307.0
Q ss_pred ccCcchhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 4 NFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLG 83 (1075)
Q Consensus 4 ~~~~~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1075)
+++|++.++|.+++++||+||+.|.|+|+|+|+||+|+||+.|+++++++|..+.+++++.+....++.+++..+.. ++
T Consensus 225 ~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~-~s 303 (604)
T COG4178 225 LIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGW-LS 303 (604)
T ss_pred HHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhH-HH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999888763 55
Q ss_pred HHHHHHHHHhhhhccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 001446 84 ATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIE 163 (1075)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~ 163 (1075)
.+++++...|.||.|.+. +|..+. ..+.|..+..+++.++..+.++..+++...|+.+|....+....+
T Consensus 304 ~v~P~li~ap~~f~g~i~-----~G~lmq------a~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~ 372 (604)
T COG4178 304 VVLPILIAAPRYFSGQIT-----FGGLMQ------AVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMD 372 (604)
T ss_pred HHHHHHhccHhhhcCcCh-----HHHHHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 577777788889999884 443321 123455566777888888888888888888888876544321111
Q ss_pred CCCCCCCCCCCCCCC--CccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEe
Q 001446 164 DKSPQRNGSRNYFSE--ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241 (1075)
Q Consensus 164 ~~~~~~~~~~~~~~~--~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~ 241 (1075)
..............+ ...++++|+++..|++++.++++||++++||.+.|.||||||||||+|+|+|+||..+|+|.+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~ 452 (604)
T COG4178 373 TEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISM 452 (604)
T ss_pred ccccCcccccccccccccceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceec
Confidence 111110000000011 467999999999999899999999999999999999999999999999999999999999998
Q ss_pred CCcCccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHH
Q 001446 242 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQ 321 (1075)
Q Consensus 242 ~~~~~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqk 321 (1075)
+. ..++.|+||.||++.||+||.++||.... ..+++++.++|.+|+|.++.+++ +...+|...||+|||
T Consensus 453 P~-----~~~~lflpQ~PY~p~GtLre~l~YP~~~~----~~~d~~l~~vL~~vgL~~L~~rl--~~~~~W~~vLS~GEq 521 (604)
T COG4178 453 PA-----DSALLFLPQRPYLPQGTLREALCYPNAAP----DFSDAELVAVLHKVGLGDLAERL--DEEDRWDRVLSGGEQ 521 (604)
T ss_pred CC-----CCceEEecCCCCCCCccHHHHHhCCCCCC----CCChHHHHHHHHHcCcHHHHHHH--hccCcHhhhcChhHH
Confidence 84 24699999999999999999999997642 26788999999999999999984 445568899999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCCCcE
Q 001446 322 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEW 390 (1075)
Q Consensus 322 qRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~ 390 (1075)
|||++||.++++|++++|||+|||||++++..+++.+++ .+.|+|.|+|+..+..+|++.+.+.+.+++
T Consensus 522 QRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~~~~~ 592 (604)
T COG4178 522 QRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLDDAGG 592 (604)
T ss_pred HHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecccccc
Confidence 999999999999999999999999999999999999998 699999999999999999999998775543
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=545.40 Aligned_cols=488 Identities=14% Similarity=0.129 Sum_probs=313.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhh-----
Q 001446 545 SAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGM----- 619 (1075)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~----- 619 (1075)
+++..+..+++..+..+...++|..+++++++. +..||+.. ..+.+.+|++.|++.+...+...+..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~---~~~~fd~~----~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~ 183 (1466)
T PTZ00265 111 FILSFISSFCMDVVTTKILKTLKLEFLKSVFYQ---DGQFHDNN----PGSKLTSDLDFYLEQVNAGIGTKFITIFTYAS 183 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455556666777777777777776652 23566521 224567888888887665544333332
Q ss_pred --hHhHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCc
Q 001446 620 --VKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGG 697 (1075)
Q Consensus 620 --i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~ 697 (1075)
+..++..++++|+|+++... +++++++.. ....+.......+.++..+......++...+.++|++|+.+
T Consensus 184 ~~i~~~i~~~~~sw~Lalv~l~-----~~pl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e 255 (1466)
T PTZ00265 184 AFLGLYIWSLFKNARLTLCITC-----VFPLIYICG---VICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGE 255 (1466)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccC
Confidence 33334445678888765311 111111111 11111222223333333344445566666788999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccch------hhhhhhHHHHHHHH
Q 001446 698 AREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRA------LVSTQGELAHALRF 771 (1075)
Q Consensus 698 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~l~~ 771 (1075)
..+.+.+.+......+...+......+...+..+ ...+.+++++||+........ .-.+.|.+...+..
T Consensus 256 ~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~-----~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~ 330 (1466)
T PTZ00265 256 KTILKKFNLSEKLYSKYILKANFMESLHIGMING-----FILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLG 330 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHH
Confidence 8877766544444333332222111111111111 112334455555543221100 00011222211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCCc--
Q 001446 772 LASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQ-- 849 (1075)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~-- 849 (1075)
....+..++.+...+..+.....+++|++++++.+++.++. .. +...+. .+.|+|+||+|+||+.
T Consensus 331 ----~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~---~~---~~~~~~---~~~I~~~nVsf~Y~~~~~ 397 (1466)
T PTZ00265 331 ----VLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENN---DD---GKKLKD---IKKIQFKNVRFHYDTRKD 397 (1466)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CC---CccCCC---CCcEEEEEEEEEcCCCCC
Confidence 11112233445555666777888999999998654332210 00 011221 2479999999999864
Q ss_pred cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEec-CCCCCccc--cCCcCcEEEEcCCCCCCCcchh
Q 001446 850 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK-PSQHIDEE--AGSGCGIFYVPQRPYTCLGTLR 926 (1075)
Q Consensus 850 ~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~i-dg~di~~~--~~~r~~i~~VpQdP~Lf~gTir 926 (1075)
.++|+|+||+|+|||++|||||||||||||+++|.|+|+|++|+|.+ ||+|++++ ..+|++|++|||+|+||++||+
T Consensus 398 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~ 477 (1466)
T PTZ00265 398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIK 477 (1466)
T ss_pred CceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHH
Confidence 47999999999999999999999999999999999999999999999 67999876 3568889999999999999999
Q ss_pred hhhcCCCCh-H----------------HHH---HHHhhh------------cCCCccc---ccccccchHHHHHHHHhCC
Q 001446 927 DQIIYPLSR-E----------------EAE---LRALKL------------HGKGEKL---VDTTNILDSYLKTILEGVR 971 (1075)
Q Consensus 927 ~NL~~p~~~-~----------------~~~---~~a~~~------------~~~~~~~---~~~~~~~d~~i~~~l~~~~ 971 (1075)
+||.|+... . ++. ....+. ....+.+ .......|++++++++.++
T Consensus 478 eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~ 557 (1466)
T PTZ00265 478 NNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVL 557 (1466)
T ss_pred HHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhC
Confidence 999985310 0 000 000000 0000000 0012356788999999999
Q ss_pred chhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEec
Q 001446 972 LSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSS 1046 (1075)
Q Consensus 972 L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~Ia 1046 (1075)
+++++.++|+||||.+ +.+.+|||||||||||||||+++|+|||||||||+||.+++..+++.+++ .|+|+|+||
T Consensus 558 l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIs 637 (1466)
T PTZ00265 558 IHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIA 637 (1466)
T ss_pred cHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 9999999999999986 46789999999999999999999999999999999999999999887754 389999999
Q ss_pred CCCCchhhccceEEEEcCC
Q 001446 1047 QRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1047 HRls~i~~~~~~l~l~~g~ 1065 (1075)
||++++++.|++++|.+|.
T Consensus 638 Hrls~i~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 638 HRLSTIRYANTIFVLSNRE 656 (1466)
T ss_pred CCHHHHHhCCEEEEEeCCc
Confidence 9999999999999998874
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-52 Score=501.34 Aligned_cols=369 Identities=22% Similarity=0.297 Sum_probs=294.4
Q ss_pred cCcchhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 5 FSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGA 84 (1075)
Q Consensus 5 ~~~~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1075)
+.|.+.+.+.++.+..++--..+.+...++|+||..+.|.....+|++.|.+..+...+..+.....+....++.....
T Consensus 313 ~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~- 391 (709)
T COG2274 313 FQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSS- 391 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-
Confidence 5688888888888888888888999999999999999999999999999988766544333333333333333322111
Q ss_pred HHHHHHHHhhhhcccccc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 001446 85 TVAVILIIEPFFAGNLKP-DTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIE 163 (1075)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~ 163 (1075)
+...|+|..++. +..++|...++..+ ...+.+.+..++..+.++.+++.+.+|+.++++.++|.+.+
T Consensus 392 ------v~iL~~G~~lVl~~~lTlG~LiAf~~l------~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~ 459 (709)
T COG2274 392 ------VLILWFGAILVLEGELTLGQLVAFNML------AGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD 459 (709)
T ss_pred ------HHHHHHHHHHHhcCCcchHHHHHHHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 111255555443 34466654444322 22233445667777889999999999999998877664332
Q ss_pred CCCCCCCCCCCCCCCCccEEEEeEEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeC
Q 001446 164 DKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 242 (1075)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~ 242 (1075)
... ...+...+.++++||+|+|+.+ .++|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.+|
T Consensus 460 ~~~------~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~d 533 (709)
T COG2274 460 KTL------IHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLD 533 (709)
T ss_pred ccc------ccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 110 0112235789999999999755 469999999999999999999999999999999999999999999999
Q ss_pred CcC------ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCC
Q 001446 243 GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWG 313 (1075)
Q Consensus 243 ~~~------~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g 313 (1075)
|.+ ..+|++|+||+|++.+|++|++|||.++.+ ..+++++.++++..+.++++.++|.+.++ +.|
T Consensus 534 g~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p------~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G 607 (709)
T COG2274 534 GVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP------EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGG 607 (709)
T ss_pred CEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC------CCCHHHHHHHHHHhCcHHHHHhcccccccccccCC
Confidence 986 457899999999999999999999999864 34578899999999999999999998765 678
Q ss_pred CCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChhhHhhCCeEEEEcCCCcEE
Q 001446 314 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGEGEWR 391 (1075)
Q Consensus 314 ~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~ 391 (1075)
.+||||||||++|||||+++|+||||||||||||+++++.+++.+.+. |+|+|+||||++.++.||+|++|++ |..
T Consensus 608 ~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~--Gki 685 (709)
T COG2274 608 ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQ--GKI 685 (709)
T ss_pred CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccC--Cce
Confidence 999999999999999999999999999999999999999999999874 6999999999999999999999986 446
Q ss_pred EecCCCCcc
Q 001446 392 VHDKRDGSS 400 (1075)
Q Consensus 392 ~~~~~~~~~ 400 (1075)
++.+.+++.
T Consensus 686 v~~gs~~el 694 (709)
T COG2274 686 VEQGSHEEL 694 (709)
T ss_pred eccCCHHHH
Confidence 666555544
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-50 Score=483.41 Aligned_cols=246 Identities=17% Similarity=0.168 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCCccccccccce
Q 001446 779 SFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTF 858 (1075)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~~~~vL~~vs~ 858 (1075)
...++..+......+.....+.+|+.++.+.+++.+. . ...+ -+ ..+.|+|+||+|+||+.+++|+|+||
T Consensus 275 ~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~----~-~~~~--~~---~~~~i~~~~v~f~y~~~~~~l~~i~~ 344 (547)
T PRK10522 275 LRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF----P-RPQA--FP---DWQTLELRNVTFAYQDNGFSVGPINL 344 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc----c-cccc--cC---cCceEEEEEEEEEeCCCCeEEecceE
Confidence 3457777888888888888999999998643211110 0 0000 01 13579999999999976789999999
Q ss_pred eecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcchhhhhcCCCChH
Q 001446 859 EIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSRE 936 (1075)
Q Consensus 859 ~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~ 936 (1075)
+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++. +.+|+++++|||||++|+||+++| . +. .+
T Consensus 345 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n-~-~~-~~ 421 (547)
T PRK10522 345 TIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE-G-KP-AN 421 (547)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc-c-Cc-hH
Confidence 9999999999999999999999999999999999999999999876 356788999999999999999998 1 21 11
Q ss_pred HHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCChhHHHHHHHHHHhhcCCCEeEe
Q 001446 937 EAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGIL 1016 (1075)
Q Consensus 937 ~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiL 1016 (1075)
+++++++++.+++.+.+.. ++|. ..|.+||||||||+|||||++++|+||||
T Consensus 422 -----------------------~~~~~~~~~~~~l~~~~~~-~~~~----~~G~~LSgGq~qRl~lARal~~~~~ilil 473 (547)
T PRK10522 422 -----------------------PALVEKWLERLKMAHKLEL-EDGR----ISNLKLSKGQKKRLALLLALAEERDILLL 473 (547)
T ss_pred -----------------------HHHHHHHHHHcCCchhhhc-cccC----CCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2334555666666544332 2221 12678999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHH----hcCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1017 DECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1017 DEATSalD~~~e~~i~~~~~----~~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
|||||+||.++++.+.+.+. ..++|+|+||||+++++..|+++++++|.
T Consensus 474 DE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~ 526 (547)
T PRK10522 474 DEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQ 526 (547)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCE
Confidence 99999999999998876653 24899999999999999999999998765
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-51 Score=457.73 Aligned_cols=198 Identities=27% Similarity=0.372 Sum_probs=165.3
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-------ccccccE
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 252 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-------~~~~~~i 252 (1075)
..++++|++++|+ +.++|+++||++.+||+++++|.||+|||||+|+|+|.++|++|+|.++|+. ......|
T Consensus 7 ~ll~~~~i~K~Fg-gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 7 PLLELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred ceeeeecceEEcC-CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 4689999999996 5789999999999999999999999999999999999999999999999964 1234579
Q ss_pred EEEcCCCCCCc-CCHHHHhcCCCCCCcccC----cCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHH
Q 001446 253 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVE----PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 327 (1075)
Q Consensus 253 ~~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lA 327 (1075)
+.|+|++.+++ .||.|||.++........ .....+..++|+.+++....+.. ..+||+||||.|+||
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~--------v~~LsiaqrQ~VeIA 157 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTL--------VGDLSIAQRQMVEIA 157 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhh--------hhhCCHHHHHHHHHH
Confidence 99999998754 699999988765432111 12234556778888875223332 268999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH---HhcCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 328 RLFYHKPKFAILDECTSAVTTDMEERFCAKV---RAMGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 328 ral~~~p~illLDEpts~LD~~~~~~i~~~l---~~~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
||+..+++++|||||||+|+....+.+++.+ ++.|.++|+|||+++.+ +.||+|.+|.+
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRD 220 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRD 220 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeC
Confidence 9999999999999999999999888887765 45799999999999887 57999999975
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=433.08 Aligned_cols=254 Identities=28% Similarity=0.384 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCC-ccccccc
Q 001446 777 SQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS-QKLLARQ 855 (1075)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~-~~~vL~~ 855 (1075)
.....++-..+..+.++..+..|..|+.++++..+...+. .|-+..+|.+..+++++.-|+ .+|+|+|
T Consensus 286 gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~-----------m~LP~P~g~L~Ve~l~~~PPg~~~pil~~ 354 (580)
T COG4618 286 GRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAER-----------MPLPAPQGALSVERLTAAPPGQKKPILKG 354 (580)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC-----------CCCCCCCceeeEeeeeecCCCCCCcceec
Confidence 4556688888889999999999999999988754332211 111223799999999997776 5699999
Q ss_pred cceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEEEcCCCCCCCcchhhhhcC-C
Q 001446 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYVPQRPYTCLGTLRDQIIY-P 932 (1075)
Q Consensus 856 vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~VpQdP~Lf~gTir~NL~~-p 932 (1075)
+||+++|||-+||+||||||||||.++|.|.|+|.+|+|.+||-|++..+ .+-.+|+|.|||--||+|||+|||.- .
T Consensus 355 isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~ 434 (580)
T COG4618 355 ISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFG 434 (580)
T ss_pred ceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999884 46668999999999999999999973 2
Q ss_pred -CChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcC
Q 001446 933 -LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHK 1010 (1075)
Q Consensus 933 -~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~ 1010 (1075)
+...+.+++|++.++. ++++-++|+||||.+ +.|..|||||||||++|||+..+
T Consensus 435 ~~~d~~kIieAA~lAgv------------------------HelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~ 490 (580)
T COG4618 435 EEADPEKVIEAARLAGV------------------------HELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGD 490 (580)
T ss_pred ccCCHHHHHHHHHHcCh------------------------HHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCC
Confidence 2233445677766554 345566789999986 67899999999999999999999
Q ss_pred CCEeEeeccCCCCCHHHHHHHHHHH---HhcCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1011 PKFGILDECTNATSVDVEEQLYRLA---KDMGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1011 p~ILiLDEATSalD~~~e~~i~~~~---~~~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
|++++||||-|+||.+-|.++.+.+ +.+|+|+|+||||.+.+...|+++.+.+|.
T Consensus 491 P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~ 548 (580)
T COG4618 491 PFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGR 548 (580)
T ss_pred CcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCCh
Confidence 9999999999999999999887665 447999999999999999999999998774
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-49 Score=482.78 Aligned_cols=382 Identities=37% Similarity=0.697 Sum_probs=297.1
Q ss_pred ccccCcchhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 2 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKY 81 (1075)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1075)
.+.++|++.++..++++.+++++..+.++++|+|+||+|++|+.|.+++.+.++++.+...+..+....+..+..++..+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 335 (659)
T TIGR00954 256 LTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKY 335 (659)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999888887777666666666655544
Q ss_pred HHHHHHHHHHHhhhhccc-cccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001446 82 LGATVAVILIIEPFFAGN-LKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISREL 160 (1075)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~ 160 (1075)
....++++++..+++... ...+..+.|.. ++.+......+..++.++..+......+.+...+.+|+.++++..++.
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~--~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~ 413 (659)
T TIGR00954 336 TWSAVGLVAVSIPIFDKTHPAFLEMSEEEL--MQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDV 413 (659)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333323333211 11122233422 221112223445566778888888899999999999999998765543
Q ss_pred cccC---CCCCC--CC------------CCCCCCCCccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHH
Q 001446 161 SIED---KSPQR--NG------------SRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSS 223 (1075)
Q Consensus 161 ~~~~---~~~~~--~~------------~~~~~~~~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKST 223 (1075)
.... ..... .. ........+.++++||++.|++++++|+|+||++++||+++|+|||||||||
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKST 493 (659)
T TIGR00954 414 KSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSS 493 (659)
T ss_pred hcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHH
Confidence 2100 00000 00 0000112356999999999986678999999999999999999999999999
Q ss_pred HHHHHhCCCCCCccEEEeCCcCccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcc-cCcCCHHHHHHHHHHcCChhHHh
Q 001446 224 LFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLD 302 (1075)
Q Consensus 224 Ll~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~ 302 (1075)
|+++|+|+++|++|+|.+++ +++++||||+|+++++|++||+.++...... .....++++.++++.++++++.+
T Consensus 494 Ll~lL~Gl~~~~~G~i~~~~-----~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~ 568 (659)
T TIGR00954 494 LFRILGELWPVYGGRLTKPA-----KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILE 568 (659)
T ss_pred HHHHHhCCCCCCCCeEeecC-----CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHh
Confidence 99999999999999999875 4579999999999999999999987532211 11235667889999999999887
Q ss_pred cCCCC--cccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChhhHhhCCe
Q 001446 303 RYPPE--KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDV 380 (1075)
Q Consensus 303 ~~~~~--~~~~~g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~t~i~vtH~~~~~~~~d~ 380 (1075)
+ |.+ +..+|+.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++.|+|+|+||||++.++.||+
T Consensus 569 ~-~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~d~ 647 (659)
T TIGR00954 569 R-EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHEY 647 (659)
T ss_pred h-cCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhCCE
Confidence 7 443 3335778999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred EEEEcCCCcEE
Q 001446 381 VLSLDGEGEWR 391 (1075)
Q Consensus 381 i~~l~~~g~~~ 391 (1075)
+++++++|+|.
T Consensus 648 il~l~~~g~~~ 658 (659)
T TIGR00954 648 LLYMDGRGGYQ 658 (659)
T ss_pred EEEEeCCCCcc
Confidence 99999888774
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=486.17 Aligned_cols=372 Identities=17% Similarity=0.236 Sum_probs=269.3
Q ss_pred cchhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 7 PAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATV 86 (1075)
Q Consensus 7 ~~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (1075)
+...+...+.++..+++...+....++.++||.|++|+.+.+++.+..++..+...+..+.......+..++.. +..+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 262 (588)
T PRK11174 185 MGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFAS-ISIA- 262 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-
Confidence 33444444555666777777888888999999999999999888777766655543333322222222111111 1110
Q ss_pred HHHHHHhhhhccccccCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 001446 87 AVILIIEPFFAGNLKPDTS--TLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIED 164 (1075)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~ 164 (1075)
..+++.+.++.+.+..+.. .++....+ ........++..+..+......+.+...+++|+.++++.+++... .
T Consensus 263 ~~~~~~~~~~~g~~t~G~l~~~~~~~~~~----~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~-~ 337 (588)
T PRK11174 263 LVAVYFGFSYLGELNFGHYGTGVTLFAGF----FVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQ-Q 337 (588)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC-C
Confidence 1111111122233332221 11111111 111222344556667777778889999999999998765432110 0
Q ss_pred CCCCCCCCCCCCCCCccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCc
Q 001446 165 KSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV 244 (1075)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~ 244 (1075)
.. ........+.++++||+|.|++++++|+|+||+|++|++++|+||||||||||+++|+|++ |++|+|.++|.
T Consensus 338 ~~-----~~~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~ 411 (588)
T PRK11174 338 GE-----KELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGI 411 (588)
T ss_pred Cc-----cccCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCE
Confidence 00 0000011235999999987766678999999999999999999999999999999999999 89999999997
Q ss_pred C------ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCC
Q 001446 245 G------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDE 315 (1075)
Q Consensus 245 ~------~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~ 315 (1075)
+ ..++++|+||||+|++|++||+|||.++.+ ..+++++.++++.++++++++++|.+.++ +.|.+
T Consensus 412 ~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~------~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~ 485 (588)
T PRK11174 412 ELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP------DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485 (588)
T ss_pred ecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC------CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCC
Confidence 5 346789999999999999999999999742 35678999999999999999999987655 56889
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCCCcEEEe
Q 001446 316 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVH 393 (1075)
Q Consensus 316 LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~~~ 393 (1075)
||||||||++|||||+++|+|+|||||||+||+++++.+.+.+++ .++|+|+|||+++.++.+|+|++++++ ..++
T Consensus 486 LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G--~i~e 563 (588)
T PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDG--QIVQ 563 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCC--eEee
Confidence 999999999999999999999999999999999999999998876 489999999999999999999999863 3445
Q ss_pred cCCCCc
Q 001446 394 DKRDGS 399 (1075)
Q Consensus 394 ~~~~~~ 399 (1075)
.+.+++
T Consensus 564 ~G~~~e 569 (588)
T PRK11174 564 QGDYAE 569 (588)
T ss_pred cCCHHH
Confidence 444433
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=491.03 Aligned_cols=364 Identities=21% Similarity=0.229 Sum_probs=278.8
Q ss_pred cCcchhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 5 FSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGA 84 (1075)
Q Consensus 5 ~~~~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1075)
+.+.+.+...+..+.++++...+....+++++||.++.|+.+.+++.+.+++..+...+..+...+...+..++.. +
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~-- 371 (686)
T TIGR03797 295 LGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPV-L-- 371 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--
Confidence 3445566666777777888888899999999999999999999988888887766555444333333332222211 1
Q ss_pred HHHHHHHHhhhhccccc-cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 001446 85 TVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIE 163 (1075)
Q Consensus 85 ~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~ 163 (1075)
....+++ +++.+. .+..+.|...++. ..+..++..+..+.....++.....+.+|+.++++.+++....
T Consensus 372 ~~~~il~----~g~~lv~~g~ltiG~lva~~------~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 441 (686)
T TIGR03797 372 TSAALFA----AAISLLGGAGLSLGSFLAFN------TAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA 441 (686)
T ss_pred HHHHHHH----HHHHHHHcCCCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 1111111 222211 1223455432222 2233444556677778888999999999999887654432110
Q ss_pred CCCCCCCCCCCCCCCCccEEEEeEEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeC
Q 001446 164 DKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 242 (1075)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~ 242 (1075)
. .......+.++++||+|.|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+|
T Consensus 442 ~--------~~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 513 (686)
T TIGR03797 442 K--------TDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYD 513 (686)
T ss_pred c--------CCCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEEC
Confidence 0 000111346999999999964 5689999999999999999999999999999999999999999999999
Q ss_pred CcC------ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCC
Q 001446 243 GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWG 313 (1075)
Q Consensus 243 ~~~------~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g 313 (1075)
|.+ ..+|++|+||||+|++|++|++|||.++.+ .+++++.++++.++++++++++|.+.++ +.|
T Consensus 514 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-------~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G 586 (686)
T TIGR03797 514 GQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-------LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGG 586 (686)
T ss_pred CEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-------CCHHHHHHHHHHcCcHHHHHhccccccccccCCC
Confidence 975 356789999999999999999999998743 3577899999999999999999987654 568
Q ss_pred CCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChhhHhhCCeEEEEcCCCcEEEe
Q 001446 314 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVH 393 (1075)
Q Consensus 314 ~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~~~ 393 (1075)
.+||||||||++|||||+++|+++|||||||+||+++++++++.+++.++|+|+|||+++.++.+|+|++|+++ ..++
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Iivl~~G--~iv~ 664 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAG--RVVQ 664 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEEEEECC--EEEE
Confidence 89999999999999999999999999999999999999999999988889999999999999999999999863 3444
Q ss_pred cCCCC
Q 001446 394 DKRDG 398 (1075)
Q Consensus 394 ~~~~~ 398 (1075)
.+.++
T Consensus 665 ~G~~~ 669 (686)
T TIGR03797 665 QGTYD 669 (686)
T ss_pred ECCHH
Confidence 44443
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=491.12 Aligned_cols=368 Identities=21% Similarity=0.295 Sum_probs=275.5
Q ss_pred ccCcchhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 4 NFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLG 83 (1075)
Q Consensus 4 ~~~~~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1075)
.+.+...++..+.++.++++...+....+++++|+.|++|+.+.+++.+..++..+..++..............+.. +.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 398 (711)
T TIGR00958 320 VFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGM-LI 398 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 34455666677777888888888999999999999999999999988888777665544333222222222211111 11
Q ss_pred HHHHHHHHHhhhhccccc-cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 001446 84 ATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSI 162 (1075)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~ 162 (1075)
.+ .++. +++.+. .+..+.|....+ ......+...+..+......+.+...+.+|+.++++.+++...
T Consensus 399 ~~--~il~----~g~~lv~~g~it~G~lva~------~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 466 (711)
T TIGR00958 399 QV--LVLY----YGGQLVLTGKVSSGNLVSF------LLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPL 466 (711)
T ss_pred HH--HHHH----HHHHHHHcCCCCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 11 1111 111111 122244433221 1223344556667777788899999999999998865443211
Q ss_pred cCCCCCCCCCCCCCCCCccEEEEeEEEEcCC--CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEE
Q 001446 163 EDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240 (1075)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~--~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~ 240 (1075)
.. .....+..+.|+++||+|.||+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 467 ~~-------~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 539 (711)
T TIGR00958 467 TG-------TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL 539 (711)
T ss_pred CC-------CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 10 0001112346999999999985 35899999999999999999999999999999999999999999999
Q ss_pred eCCcC------ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---C
Q 001446 241 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---N 311 (1075)
Q Consensus 241 ~~~~~------~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~ 311 (1075)
+||.+ ..++++|+||||+|++|++|++|||.++.+ ..+++++.++++.++++++++++|.+.++ +
T Consensus 540 idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~------~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige 613 (711)
T TIGR00958 540 LDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT------DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGE 613 (711)
T ss_pred ECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCC------CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccC
Confidence 99975 346789999999999999999999999853 23567899999999999999999976554 5
Q ss_pred CCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChhhHhhCCeEEEEcCCCcEE
Q 001446 312 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWR 391 (1075)
Q Consensus 312 ~g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~ 391 (1075)
+|.+||||||||++||||++++|+|+|||||||+||+++++.+.+.....++|+|+|||+++.+..+|+|++|++ |..
T Consensus 614 ~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~IivL~~--G~i 691 (711)
T TIGR00958 614 KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQILVLKK--GSV 691 (711)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCEEEEEEC--CEE
Confidence 678999999999999999999999999999999999999999998444468999999999999999999999986 335
Q ss_pred EecCCCCc
Q 001446 392 VHDKRDGS 399 (1075)
Q Consensus 392 ~~~~~~~~ 399 (1075)
++.+++++
T Consensus 692 ve~Gt~~e 699 (711)
T TIGR00958 692 VEMGTHKQ 699 (711)
T ss_pred EEeeCHHH
Confidence 55554443
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=493.98 Aligned_cols=373 Identities=23% Similarity=0.294 Sum_probs=279.0
Q ss_pred cCcchhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 5 FSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGA 84 (1075)
Q Consensus 5 ~~~~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1075)
+.+...+...+.++.++++...+.....++++||.+++|+.+.+++.+.+.+..+...+..+...+...+..++.... .
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~ 391 (710)
T TIGR03796 313 VSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLN-S 391 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 344555666667777788888888888999999999999999999988887766655444333333333222222111 1
Q ss_pred HHHHHHHHhhhhccccc-cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 001446 85 TVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIE 163 (1075)
Q Consensus 85 ~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~ 163 (1075)
+ .++ ++++.+. .+..+.|...++ ...+..++..+..+.....++.....+.+|+.++++.+++....
T Consensus 392 ~--~il----~~g~~~v~~g~lt~G~lva~------~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~ 459 (710)
T TIGR03796 392 A--LIL----VVGGLRVMEGQLTIGMLVAF------QSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLE 459 (710)
T ss_pred H--HHH----HHHHHHHHcCCCCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 1 111 1222111 122345533222 12233444566677777888999999999999988654432111
Q ss_pred CCCCCCCCCCCCCCCCccEEEEeEEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeC
Q 001446 164 DKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 242 (1075)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~ 242 (1075)
................+.|+++||+|.|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+|
T Consensus 460 ~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 539 (710)
T TIGR03796 460 EEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFD 539 (710)
T ss_pred cccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 000000000000112356999999999985 4689999999999999999999999999999999999999999999999
Q ss_pred CcC------ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCC
Q 001446 243 GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWG 313 (1075)
Q Consensus 243 ~~~------~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g 313 (1075)
|.+ .+++++|+||||+|++|++|++|||.++.+ ..+++++.++++.++++++++++|.+.++ +.|
T Consensus 540 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~------~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 540 GIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP------TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred CEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCC------CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 975 346889999999999999999999998632 24678899999999999999999987554 578
Q ss_pred CCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChhhHhhCCeEEEEcCCCcEEEe
Q 001446 314 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVH 393 (1075)
Q Consensus 314 ~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~~~ 393 (1075)
.+|||||||||+|||||+++|+++|||||||+||+++++.+++.+++.++|+|+|||+++.+..+|+|++|+++ ..++
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~G--~i~~ 691 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERG--KVVQ 691 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeCC--EEEE
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999863 3444
Q ss_pred cCCCC
Q 001446 394 DKRDG 398 (1075)
Q Consensus 394 ~~~~~ 398 (1075)
.+.++
T Consensus 692 ~G~~~ 696 (710)
T TIGR03796 692 RGTHE 696 (710)
T ss_pred ecCHH
Confidence 44443
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-49 Score=433.49 Aligned_cols=356 Identities=22% Similarity=0.260 Sum_probs=249.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001446 16 EQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 95 (1075)
Q Consensus 16 ~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (1075)
..+.+.+....+-....|=|.||.||-|+.|.++......+..+.-.+........++.|..++...-..+.++.... .
T Consensus 206 ~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~g-i 284 (591)
T KOG0057|consen 206 MNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNG-I 284 (591)
T ss_pred HHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh-h
Confidence 333444443344445568999999999999998766665555444333333333334444433321111111111111 1
Q ss_pred hccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCC
Q 001446 96 FAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNY 175 (1075)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (1075)
+++.+ +.|...++..+.. .+-..+..+...+..+.+...-...+.... +.+.+..+. ....
T Consensus 285 ~~~~m-----tvgdlv~~n~l~~------qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~--~~~~~i~~~------~~~i 345 (591)
T KOG0057|consen 285 AAGKM-----TVGDLVMVNSLLF------QLSLPLNFLGSVYRELRQALTDMRTLFILL--EVDEDIQEA------ALPI 345 (591)
T ss_pred hhccc-----cccchhhHHHHHH------HHHhHHHHHHHHHHHHHHHHHhHHHHHhhh--hhhhhhhhc------cCCc
Confidence 22333 4443332222111 111223333334444433322222221111 111111110 0011
Q ss_pred CCCCccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------cccc
Q 001446 176 FSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLN 249 (1075)
Q Consensus 176 ~~~~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~ 249 (1075)
....+.|+|+||+|+|++++++|+++||+|++||.+||+|+|||||||++|+|.++++ ++|+|++||++ ..+|
T Consensus 346 ~~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR 424 (591)
T KOG0057|consen 346 ELFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLR 424 (591)
T ss_pred ccCCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhh
Confidence 1234569999999999888889999999999999999999999999999999999999 99999999986 3578
Q ss_pred ccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChhHHHHHHH
Q 001446 250 KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGM 326 (1075)
Q Consensus 250 ~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqRl~l 326 (1075)
+.||||||+..+|++||.+||.||.. ..+++++.++++.+++++.+.++|.+..+ ++|..|||||||||+|
T Consensus 425 ~~Ig~VPQd~~LFndTIl~NI~YGn~------sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvsl 498 (591)
T KOG0057|consen 425 QSIGVVPQDSVLFNDTILYNIKYGNP------SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSL 498 (591)
T ss_pred hheeEeCCcccccchhHHHHhhcCCC------CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHH
Confidence 89999999999999999999999965 35678899999999999999999988655 6788999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCCCcEEEecCCCCcc
Q 001446 327 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSS 400 (1075)
Q Consensus 327 Aral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~~~~~~~~~~ 400 (1075)
|||++++|+|+++|||||+||.++|+++++.+.+ .++|+|+|.||+++++.+|+|+++++++ ..+.+.+.++
T Consensus 499 aRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~--v~e~gth~el 572 (591)
T KOG0057|consen 499 ARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGT--VKEYGTHSEL 572 (591)
T ss_pred HHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCe--eEEeccHHHH
Confidence 9999999999999999999999999999999876 4999999999999999999999999743 4444455444
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=438.49 Aligned_cols=346 Identities=22% Similarity=0.329 Sum_probs=268.9
Q ss_pred HHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cccccCc
Q 001446 26 LHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFA-GNLKPDT 104 (1075)
Q Consensus 26 ~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 104 (1075)
-++++| ..+++++|+..+...+++.+.-++..+...++.+..+..+.+..++. +++..+..+.+...+.+ |.+
T Consensus 182 FLD~Lr-GL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa-~lsiAlvAv~~g~~ll~~G~l---- 255 (559)
T COG4988 182 FLDRLR-GLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFA-YLSIALVAVYIGFRLLGEGDL---- 255 (559)
T ss_pred HHHHhc-ChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCc----
Confidence 466666 68999999999999999988888888887777777666665555543 33333322222222233 222
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCCCCCccEEE
Q 001446 105 STLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEF 184 (1075)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 184 (1075)
++..+ + .++-..+-+|..+-.+...+|.-....++++.+..+.+.+.+....... . .....+...++.
T Consensus 256 -tl~~~--l----~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~-~----~~~~~~~~ei~~ 323 (559)
T COG4988 256 -TLFAG--L----FVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEK-A----EVANEPPIEISL 323 (559)
T ss_pred -cHHHH--H----HHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccc-c----ccccCCCceeee
Confidence 32211 1 2223445677888888888888888888889988887654432111100 0 001111234556
Q ss_pred EeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEEEcCC
Q 001446 185 SGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQR 258 (1075)
Q Consensus 185 ~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~ 258 (1075)
+|+++.||+++++++|+||++++|++++|+|+||||||||+++|+|+.+|++|+|.+||.+ ..++++++||+|+
T Consensus 324 ~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~ 403 (559)
T COG4988 324 ENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQN 403 (559)
T ss_pred cceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCC
Confidence 6999999988899999999999999999999999999999999999999999999999975 3578999999999
Q ss_pred CCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChhHHHHHHHHHHHcCCCC
Q 001446 259 PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPK 335 (1075)
Q Consensus 259 ~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqRl~lAral~~~p~ 335 (1075)
|++|.+|+||||.++.. ..+++++.++++..++.++.+. |.+.++ +.|..|||||+|||++||||+++++
T Consensus 404 p~lf~gTireNi~l~~~------~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 404 PYLFAGTIRENILLARP------DASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred CccccccHHHHhhccCC------cCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 99999999999999854 3567889999999999999998 776543 6788999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCCCcEEEecCCCC
Q 001446 336 FAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDG 398 (1075)
Q Consensus 336 illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~~~~~~~~ 398 (1075)
++|+||||++||.++++.+.+.+.+ +++|+|+||||++.+..+|+|++|+++ ..++.+.+.
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G--~l~~~g~~~ 539 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNG--RLVEQGTHE 539 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCC--ceeccCCHH
Confidence 9999999999999999999998865 489999999999999999999999974 244444443
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-48 Score=506.65 Aligned_cols=441 Identities=18% Similarity=0.158 Sum_probs=276.2
Q ss_pred HHHHhHHHHHHHHHHHHHhccCC-ceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHhhc
Q 001446 560 ARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTG 638 (1075)
Q Consensus 560 ~~~~~~~r~~l~~~ll~~~l~~~-~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~~~~~~~~~l~~~~~ 638 (1075)
.+...+.|..+...+++..++-. .+++ ....+++.++++.|++.+.... ..+..++..++.++...+.++...+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~----~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg 440 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARK----NFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLG 440 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcC----CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666665554422 2221 2235678899999999988765 3333333333332222222221111
Q ss_pred hh---hHHHHHHHHHHHHHHHHHhccccccccHHHHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q 001446 639 QR---GVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHS 715 (1075)
Q Consensus 639 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~ 715 (1075)
.. +++++++++++...+.+ .......+..+..........+..++.++|+.|++|+...+.+.+...+..+..
T Consensus 441 ~~~l~~~~v~~l~~pl~~~~~~----~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~ 516 (1495)
T PLN03232 441 VASLFGSLILFLLIPLQTLIVR----KMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWF 516 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 11 11111111111111111 112222222222222223334555678899999987766554443322222222
Q ss_pred HHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 716 LLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVE 795 (1075)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1075)
.+. .++.. +..++....+..+ ..+.++....... ..+.+.+..++ ..+..+..++..+......+.+
T Consensus 517 ~~~---~~~~~-~~~~~~~~~~~~~---~~~~fg~~~v~~~--~lt~g~vf~~l----~l~~~l~~pl~~l~~~~~~~~~ 583 (1495)
T PLN03232 517 RKA---QLLSA-FNSFILNSIPVVV---TLVSFGVFVLLGG--DLTPARAFTSL----SLFAVLRSPLNMLPNLLSQVVN 583 (1495)
T ss_pred HHH---HHHHH-HHHHHHHHHHHHH---HHHHHHHHHHhCC--CCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 211 11111 1111111111110 0111111110000 01122222222 2333445567777777788889
Q ss_pred HhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCC--ccccccccceeecCCCeEEEEcCCC
Q 001446 796 LSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS--QKLLARQLTFEIVPGKSLLVTGPNG 873 (1075)
Q Consensus 796 ~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~--~~~vL~~vs~~I~~Ge~vaIvG~SG 873 (1075)
+..+.+|+.++++.+++.+.. .++ ..+ ..+.|+|+||+|+||+ ++++|+|+||+|++||+++||||||
T Consensus 584 a~~s~~Ri~~~L~~~~~~~~~------~~~-~~~---~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sG 653 (1495)
T PLN03232 584 ANVSLQRIEELLLSEERILAQ------NPP-LQP---GAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTG 653 (1495)
T ss_pred HHHHHHHHHHHHcCccccccc------cCC-cCC---CCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCC
Confidence 999999999998644321110 000 001 1357999999999985 4689999999999999999999999
Q ss_pred CcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccc
Q 001446 874 SGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLV 953 (1075)
Q Consensus 874 sGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~ 953 (1075)
||||||+++|+|+|+|.+|.+. .+|.+|+||||+|+||+|||||||.++...
T Consensus 654 SGKSTLl~lLlG~~~~~~G~i~----------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~------------------ 705 (1495)
T PLN03232 654 EGKTSLISAMLGELSHAETSSV----------VIRGSVAYVPQVSWIFNATVRENILFGSDF------------------ 705 (1495)
T ss_pred CcHHHHHHHHhCCCcccCCCEE----------EecCcEEEEcCccccccccHHHHhhcCCcc------------------
Confidence 9999999999999999998763 245679999999999999999999986432
Q ss_pred cccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHH
Q 001446 954 DTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLY 1032 (1075)
Q Consensus 954 ~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~ 1032 (1075)
.+++++++++.++|.+.++.+|+|+||.+ +.|.+||||||||||||||++++|+|+||||||||||.++++.+.
T Consensus 706 -----~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~ 780 (1495)
T PLN03232 706 -----ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVF 780 (1495)
T ss_pred -----CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence 23445667777777777888899999986 678999999999999999999999999999999999999998775
Q ss_pred H-HHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1033 R-LAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1033 ~-~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
+ .+.. +++|+|+||||+++++..|++++|++|.
T Consensus 781 ~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~ 816 (1495)
T PLN03232 781 DSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGM 816 (1495)
T ss_pred HHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCE
Confidence 4 3433 5899999999999999999999998775
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=487.46 Aligned_cols=368 Identities=21% Similarity=0.270 Sum_probs=278.0
Q ss_pred ccCcchhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 4 NFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLG 83 (1075)
Q Consensus 4 ~~~~~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1075)
.+.+...+...+.++..+++...+....+++++||.+++|+.+.+++.+.+.+..+...+..+..........++.. +.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 392 (708)
T TIGR01193 314 LFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKL-IL 392 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 34555667777777777888888888889999999999999999999888877666544333322222222222111 11
Q ss_pred HHHHHHHHHhhhhccccc-cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 001446 84 ATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSI 162 (1075)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~ 162 (1075)
. ..++ ++++.+. .+..+.|...++. .....++..+..+.....++.....+.+|+.++++.+++...
T Consensus 393 ~--i~il----~~g~~lv~~g~ls~G~lva~~------~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 460 (708)
T TIGR01193 393 N--VVIL----WTGAYLVMRGKLTLGQLITFN------ALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFIN 460 (708)
T ss_pred H--HHHH----HHHHHHHHcCCCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 1 1111 1222211 1223455432221 223334456667777788899999999999998765443221
Q ss_pred cCCCCCCCCCCCCCCCCccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeC
Q 001446 163 EDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 242 (1075)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~ 242 (1075)
... ........+.|+++||+|.|++++++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+|
T Consensus 461 ~~~------~~~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~id 534 (708)
T TIGR01193 461 KKK------RTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLN 534 (708)
T ss_pred ccc------ccCCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEC
Confidence 100 00011123569999999999866789999999999999999999999999999999999999999999999
Q ss_pred CcC------ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCC
Q 001446 243 GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWG 313 (1075)
Q Consensus 243 ~~~------~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g 313 (1075)
|.+ ..+|++|+||||+|++|++||+|||.++.. ...+++++.++++.++++++++++|.+.++ ++|
T Consensus 535 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~-----~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G 609 (708)
T TIGR01193 535 GFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAK-----ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEG 609 (708)
T ss_pred CEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCC-----CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCC
Confidence 975 356789999999999999999999998732 124677899999999999999999987554 578
Q ss_pred CCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh-cCCeEEEEecChhhHhhCCeEEEEcCCCcEEE
Q 001446 314 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA-MGTSCITISHRPALVAFHDVVLSLDGEGEWRV 392 (1075)
Q Consensus 314 ~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~-~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~~ 392 (1075)
.+||||||||++||||++++|+++|||||||+||+++++.+++.+++ .++|+|+||||++.+..+|+|++|+++ ..+
T Consensus 610 ~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G--~i~ 687 (708)
T TIGR01193 610 SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHG--KII 687 (708)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEEEECC--EEE
Confidence 89999999999999999999999999999999999999999998876 479999999999999999999999863 344
Q ss_pred ecCCC
Q 001446 393 HDKRD 397 (1075)
Q Consensus 393 ~~~~~ 397 (1075)
+.+.+
T Consensus 688 ~~G~~ 692 (708)
T TIGR01193 688 EQGSH 692 (708)
T ss_pred EECCH
Confidence 44444
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=504.60 Aligned_cols=244 Identities=19% Similarity=0.187 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCC--ccccccc
Q 001446 778 QSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS--QKLLARQ 855 (1075)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~--~~~vL~~ 855 (1075)
.+..++..+......+.++..+.+|+.++++.++..+.. .++ .-+ ..+.|+|+||+|+|++ ++++|+|
T Consensus 566 ~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~------~~~-~~~---~~~~I~~~nvsf~y~~~~~~~vL~~ 635 (1622)
T PLN03130 566 VLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLP------NPP-LEP---GLPAISIKNGYFSWDSKAERPTLSN 635 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc------CCc-ccC---CCCceEEEeeEEEccCCCCCceeec
Confidence 345566677777788888999999999997543221100 000 001 1357999999999985 3689999
Q ss_pred cceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCC-CeEecCCCCCccccCCcCcEEEEcCCCCCCCcchhhhhcCCCC
Q 001446 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVS-GSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLS 934 (1075)
Q Consensus 856 vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~s-G~I~idg~di~~~~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~ 934 (1075)
+||+|++||+++||||||||||||+++|+|+++|.+ |+|.+ |.+|+||||+|++|+|||||||.++.+
T Consensus 636 inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-----------~~~Iayv~Q~p~LfngTIreNI~fg~~ 704 (1622)
T PLN03130 636 INLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-----------RGTVAYVPQVSWIFNATVRDNILFGSP 704 (1622)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-----------cCeEEEEcCccccCCCCHHHHHhCCCc
Confidence 999999999999999999999999999999999999 99974 456999999999999999999998643
Q ss_pred hHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCE
Q 001446 935 REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKF 1013 (1075)
Q Consensus 935 ~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~I 1013 (1075)
. .+++++++++.++|.+.++.+|+|++|.+ +.|.+||||||||||||||++++|+|
T Consensus 705 ~-----------------------d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~I 761 (1622)
T PLN03130 705 F-----------------------DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV 761 (1622)
T ss_pred c-----------------------cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 2 23456677788888888889999999986 67899999999999999999999999
Q ss_pred eEeeccCCCCCHHHHHHHH-HHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1014 GILDECTNATSVDVEEQLY-RLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1014 LiLDEATSalD~~~e~~i~-~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
+||||||||||+++++.+. +.++. +++|+|+||||++.++..|++++|++|.
T Consensus 762 lLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~ 816 (1622)
T PLN03130 762 YIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGM 816 (1622)
T ss_pred EEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCE
Confidence 9999999999999998764 44433 5899999999999999999999998775
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=483.30 Aligned_cols=367 Identities=23% Similarity=0.313 Sum_probs=277.9
Q ss_pred ccCcchhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 4 NFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLG 83 (1075)
Q Consensus 4 ~~~~~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1075)
.+.+.+.+...+..+.++++...+.....++++||.++.|+.+.+++.+.+++..+...+..+.......+..++.. +.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 382 (694)
T TIGR03375 304 LLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQ-LV 382 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 34556667777777788888888888899999999999999999999888877766544433322222222222111 11
Q ss_pred HHHHHHHHHhhhhccccc-cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 001446 84 ATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSI 162 (1075)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~ 162 (1075)
.+ .++ ++++.+. .+..+.|...++ ...+..++..+..+......+.....+.+|+.++++.+++...
T Consensus 383 ~~--~il----~~g~~~v~~g~ls~G~l~a~------~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 383 SV--AIV----VVGVYLISDGELTMGGLIAC------VMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HH--HHH----HHHHHHHHcCCCCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 11 111 1222211 122345533222 2223344455666777778889999999999998865443211
Q ss_pred cCCCCCCCCCCCCCCCCccEEEEeEEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEe
Q 001446 163 EDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241 (1075)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~ 241 (1075)
... ........+.|+++||+|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 451 ~~~------~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 524 (694)
T TIGR03375 451 GTR------FLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLL 524 (694)
T ss_pred CCC------CCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 000 0001112346999999999975 457999999999999999999999999999999999999999999999
Q ss_pred CCcC------ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CC
Q 001446 242 PGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NW 312 (1075)
Q Consensus 242 ~~~~------~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~ 312 (1075)
||.+ ..++++|+||||+|++|++|++|||.++.+ ..+++++.++++.++++++++++|.+.++ ++
T Consensus 525 dg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~------~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 525 DGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP------YADDEEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred CCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC------CCCHHHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 9975 356789999999999999999999998743 24678899999999999999999987554 57
Q ss_pred CCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCCCcE
Q 001446 313 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEW 390 (1075)
Q Consensus 313 g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~ 390 (1075)
|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++ .++|+|+||||++.++.||+|++|+++ .
T Consensus 599 G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G--~ 676 (694)
T TIGR03375 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNG--R 676 (694)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCC--E
Confidence 889999999999999999999999999999999999999999999876 379999999999999999999999863 3
Q ss_pred EEecCCC
Q 001446 391 RVHDKRD 397 (1075)
Q Consensus 391 ~~~~~~~ 397 (1075)
.++.+.+
T Consensus 677 i~e~G~~ 683 (694)
T TIGR03375 677 IVADGPK 683 (694)
T ss_pred EEeeCCH
Confidence 4444444
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=430.83 Aligned_cols=358 Identities=22% Similarity=0.310 Sum_probs=263.5
Q ss_pred HHHHHHHHHHHHH-HHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001446 15 KEQQLEGEYRQLH-SRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIE 93 (1075)
Q Consensus 15 ~~~~~e~~~r~~l-~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (1075)
...+..+.+|..+ +.+...+| ..+||.++..+..+.+.-+...+..++..+...+.+. +..++..+... ...
T Consensus 189 ~l~~~r~~lr~~~td~v~G~~E-L~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a----~~~l~~g~~v~--~~l 261 (573)
T COG4987 189 HLAQGRAALRSQFTDWVQGQAE-LLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDA----ILLLIAGLLVI--GLL 261 (573)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH-HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH--HHH
Confidence 3444456666644 44555555 9999999999876666655555554444333333332 22222221111 122
Q ss_pred hhhccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCC
Q 001446 94 PFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLS-ISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGS 172 (1075)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 172 (1075)
.|+++....|..+...+ ++..+ ++...+.++..+. .+...+.+....+.|+.++.+.+++...++.+
T Consensus 262 ~w~a~~~~~G~~~~~~a-a~~ll-----~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~------ 329 (573)
T COG4987 262 LWMAAQVGAGALAQPGA-ALALL-----VIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQ------ 329 (573)
T ss_pred HHHHhcCcCCCcchhHH-HHHHH-----HHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCccc------
Confidence 35665544443321111 11111 1123334444444 56677888888899998877665544322110
Q ss_pred CCCCCCCccEEEEeEEEEcCCCC-eeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------
Q 001446 173 RNYFSEANYIEFSGVKVVTPTGN-VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------ 245 (1075)
Q Consensus 173 ~~~~~~~~~i~~~~v~~~~~~~~-~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------ 245 (1075)
.......++++||+|+||+.+ ++|+|+||++++||+++|+|+||||||||+++|.|.|+|++|+|..+|.+
T Consensus 330 --~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~ 407 (573)
T COG4987 330 --TATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDE 407 (573)
T ss_pred --cCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCCh
Confidence 111112699999999999765 79999999999999999999999999999999999999999999999965
Q ss_pred ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChhHHH
Q 001446 246 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQ 322 (1075)
Q Consensus 246 ~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkq 322 (1075)
+++++.|++++|++++|.+|+|+|+....+ ..++++++++++++||++++...|.+..+ +.|..|||||||
T Consensus 408 ~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~------~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r 481 (573)
T COG4987 408 QALRETISVLTQRVHLFSGTLRDNLRLANP------DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481 (573)
T ss_pred hhHHHHHhhhccchHHHHHHHHHHHhhcCC------CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH
Confidence 346778999999999999999999998754 36789999999999999999998876543 668999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCCCcEEEecCCCCcc
Q 001446 323 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSS 400 (1075)
Q Consensus 323 Rl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~~~~~~~~~~ 400 (1075)
|++|||+|+++.+++||||||.|||+.+++++++.+.+ .|+|+|+|||++..++.+|+|++|++ |..+++++++++
T Consensus 482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~--Gkiie~G~~~~L 559 (573)
T COG4987 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDN--GKIIEEGTHAEL 559 (573)
T ss_pred HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEEC--CeeeecCCHHhh
Confidence 99999999999999999999999999999999999876 49999999999999999999999997 346666666655
Q ss_pred c
Q 001446 401 V 401 (1075)
Q Consensus 401 ~ 401 (1075)
+
T Consensus 560 l 560 (573)
T COG4987 560 L 560 (573)
T ss_pred h
Confidence 4
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=474.92 Aligned_cols=366 Identities=20% Similarity=0.270 Sum_probs=274.6
Q ss_pred ccCcchhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 4 NFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLG 83 (1075)
Q Consensus 4 ~~~~~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1075)
.+.+.+.+...+.++..+++...+.....+.++||.|+.|+.+.+++.+..++..+...+..+..........++... .
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 262 (582)
T PRK11176 184 VVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASL-A 262 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 344555666666677777787788888899999999999999999888888777666554443333333322222211 1
Q ss_pred HHHHHHHHHhhhhcccc-ccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 001446 84 ATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSI 162 (1075)
Q Consensus 84 ~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~ 162 (1075)
.+ .++ ++++.. ..+..+.|...++ ...+..++..+..+......+.....+.+|+.++++.+++...
T Consensus 263 ~~--~i~----~~g~~~~~~g~is~g~~~~~------~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 330 (582)
T PRK11176 263 LA--FVL----YAASFPSVMDTLTAGTITVV------FSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE 330 (582)
T ss_pred HH--HHH----HHHHHHHHcCCCCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC
Confidence 11 111 111111 1122244433221 1223334556667777788889999999999887654332111
Q ss_pred cCCCCCCCCCCCCCCCCccEEEEeEEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEe
Q 001446 163 EDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241 (1075)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~ 241 (1075)
. . ....+..+.++++||+|.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 331 ~--~------~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i 402 (582)
T PRK11176 331 G--K------RVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILL 402 (582)
T ss_pred C--C------cCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEE
Confidence 0 0 0011123469999999999753 68999999999999999999999999999999999999999999999
Q ss_pred CCcC------ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CC
Q 001446 242 PGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NW 312 (1075)
Q Consensus 242 ~~~~------~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~ 312 (1075)
+|.+ ..+++.|+||||+|++|++|++|||.++.+ +..++++++++++.++++++++++|.+.++ ++
T Consensus 403 ~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-----~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 403 DGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYART-----EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred CCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCC-----CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 9975 245788999999999999999999998742 124678899999999999999999987654 56
Q ss_pred CCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCCCcE
Q 001446 313 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEW 390 (1075)
Q Consensus 313 g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~ 390 (1075)
|.+||||||||++|||||+++|+++|||||||+||++++..+++.+.+ .++|+|+||||++.++.||+|++++++ .
T Consensus 478 g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g--~ 555 (582)
T PRK11176 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDG--E 555 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECC--E
Confidence 889999999999999999999999999999999999999999998876 479999999999999999999999863 3
Q ss_pred EEecCCC
Q 001446 391 RVHDKRD 397 (1075)
Q Consensus 391 ~~~~~~~ 397 (1075)
..+.+.+
T Consensus 556 i~e~g~~ 562 (582)
T PRK11176 556 IVERGTH 562 (582)
T ss_pred EEEeCCH
Confidence 4444443
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=427.53 Aligned_cols=197 Identities=28% Similarity=0.371 Sum_probs=169.9
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-------ccccccEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-------~~~~~~i~ 253 (1075)
.++++++++.|| +..++++|||+|++||+.+|+|+||+|||||+++|.|+++|++|+|.++|+. +..+..||
T Consensus 4 ~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 4 ALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred eEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 589999999998 7889999999999999999999999999999999999999999999999974 23556799
Q ss_pred EEcCCCCCCc-CCHHHHhcCCCCCCcc---cCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHH
Q 001446 254 YVPQRPYTAV-GTLRDQLIYPLTSDQE---VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 329 (1075)
Q Consensus 254 ~v~Q~~~~~~-~tv~~ni~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAra 329 (1075)
+|+|++.+++ .||.|||..+...... ......+++.++.+..|+.-..+... ..||-||||||.|-+|
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V--------~dLsVG~qQRVEIlKa 154 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV--------ADLSVGEQQRVEILKA 154 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee--------ecCCcchhHHHHHHHH
Confidence 9999998766 5999999998754311 11223456777888888876666554 6899999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 330 FYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 330 l~~~p~illLDEpts~LD~~~~~~i~~~l~---~~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
||++|++||||||||-|-|...+++++.++ +.|+|||+|||.++.+. .||++-+|..
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~ 215 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRR 215 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeC
Confidence 999999999999999999999998887665 56999999999998875 6999999975
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=430.37 Aligned_cols=391 Identities=38% Similarity=0.720 Sum_probs=321.3
Q ss_pred CccccCcchhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 1 MMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLK 80 (1075)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1075)
+||.++|+|+++.+++.++++.+|+.|+++.+|.|+||||+|.+.|.+++++.|+.++.....+++.+.|+.+...|+++
T Consensus 280 iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mK 359 (728)
T KOG0064|consen 280 ILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMK 359 (728)
T ss_pred HHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccccccCcc-h---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001446 81 YLGATVAVILIIEPFFAGNLKPDTS-T---LGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVI 156 (1075)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~ 156 (1075)
|.+...+++++..|.+.+....+.. . -+.. ....+...-..+.+...++..++.++..+.++.++..|+.++++.
T Consensus 360 YvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~s-rt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v 438 (728)
T KOG0064|consen 360 YTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNS-RTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSV 438 (728)
T ss_pred HhhccCceEEEEeeeeecccCCCCcccccccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9988877777766766555433211 0 1110 011111222456677788999999999999999999999876543
Q ss_pred hhhccccC--C-CCC-----------CCCC----CCCCCCCccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCc
Q 001446 157 SRELSIED--K-SPQ-----------RNGS----RNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNG 218 (1075)
Q Consensus 157 ~~~~~~~~--~-~~~-----------~~~~----~~~~~~~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~G 218 (1075)
..+..... . ... .++. .........|.++|+.+..|.+..++..++|+|++|-.+.|+||||
T Consensus 439 ~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNG 518 (728)
T KOG0064|consen 439 LHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNG 518 (728)
T ss_pred HHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCcceeecceeEEecCCceEEEECCCC
Confidence 33221100 0 000 0000 0001123459999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhCCCCCCccEEEeCCcCccccccEEEEcCCCCCCcCCHHHHhcCCCCCCccc-CcCCHHHHHHHHHHcCC
Q 001446 219 SGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDL 297 (1075)
Q Consensus 219 sGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~-~~~~~~~~~~~l~~~~l 297 (1075)
||||+|+|+|.|+||...|...++. ..+|.|+||.||+-.||+||+|.||...++.. ....+.++..+|..+.|
T Consensus 519 CGKSSLfRILggLWPvy~g~L~~P~-----~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L 593 (728)
T KOG0064|consen 519 CGKSSLFRILGGLWPVYNGLLSIPR-----PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHL 593 (728)
T ss_pred ccHHHHHHHHhccCcccCCeeecCC-----CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhH
Confidence 9999999999999999999998876 34699999999999999999999998755432 35678889999999999
Q ss_pred hhHHhcCCC-CcccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCCeEEEEecChhhHh
Q 001446 298 EYLLDRYPP-EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA 376 (1075)
Q Consensus 298 ~~~~~~~~~-~~~~~~g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~~~~t~i~vtH~~~~~~ 376 (1075)
++.+.+-.. +...+|-..||||||||+++||.+|++|+..+|||.|||+.++.+..+++..+..|.+.|.|||++.+.+
T Consensus 594 ~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk 673 (728)
T KOG0064|consen 594 EHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWK 673 (728)
T ss_pred HHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHHH
Confidence 998887432 2344788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEEEEcCCCcEEEecCCC
Q 001446 377 FHDVVLSLDGEGEWRVHDKRD 397 (1075)
Q Consensus 377 ~~d~i~~l~~~g~~~~~~~~~ 397 (1075)
++.+.+..|++|+|.....+.
T Consensus 674 ~h~~ll~~dg~g~~q~~~ln~ 694 (728)
T KOG0064|consen 674 YHTHLLEFDGEGGWQFRALNT 694 (728)
T ss_pred HHHHHHhccCCCCeeeccCCh
Confidence 999999999999998765443
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=463.45 Aligned_cols=334 Identities=22% Similarity=0.267 Sum_probs=244.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001446 16 EQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 95 (1075)
Q Consensus 16 ~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (1075)
.++.++++...+....++.++|+.|+.|+.+.+++.+..++..+...+..+..........++. ......+ .+
T Consensus 185 ~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~ 257 (529)
T TIGR02868 185 LARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAA---GLAVLGA----LW 257 (529)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH----HH
Confidence 4455577777888888999999999999999988887776655543332222211111111111 1111111 12
Q ss_pred hccccc-cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCC
Q 001446 96 FAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRN 174 (1075)
Q Consensus 96 ~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (1075)
+++.+. .+..+.|...++. .....++..+..+......+.......+|+.++++.+++...... .. ...
T Consensus 258 ~g~~~~~~g~~t~g~l~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~--~~--~~~ 327 (529)
T TIGR02868 258 AGGPAVADGTLAPATLAVLV------LLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVV--PA--AGA 327 (529)
T ss_pred HHHHHHhCCCCChhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCC--CC--Ccc
Confidence 222211 1222333222211 112223344455555667788888999999988765433211000 00 000
Q ss_pred CCCCCccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----cccc
Q 001446 175 YFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLN 249 (1075)
Q Consensus 175 ~~~~~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~ 249 (1075)
..+..+.++++||+|.|++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.+ .+++
T Consensus 328 ~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr 407 (529)
T TIGR02868 328 LGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELR 407 (529)
T ss_pred cCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHH
Confidence 11123469999999999876789999999999999999999999999999999999999999999999975 2456
Q ss_pred ccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChhHHHHHHH
Q 001446 250 KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGM 326 (1075)
Q Consensus 250 ~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqRl~l 326 (1075)
++|+||||+|++|++||+|||.++.+ ..+++++.++++.+++++++.++|.+.++ ++|.+||||||||++|
T Consensus 408 ~~i~~V~Q~~~lF~~TI~eNI~~g~~------~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiai 481 (529)
T TIGR02868 408 RRISVFAQDAHLFDTTVRDNLRLGRP------DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLAL 481 (529)
T ss_pred hheEEEccCcccccccHHHHHhccCC------CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHH
Confidence 78999999999999999999999743 24678899999999999999999987655 5788999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecCh
Q 001446 327 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRP 372 (1075)
Q Consensus 327 Aral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~ 372 (1075)
|||++++|+++|||||||+||+++++.+.+.+++ .++|+|+||||+
T Consensus 482 ARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 482 ARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999876 389999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=468.29 Aligned_cols=357 Identities=22% Similarity=0.301 Sum_probs=274.0
Q ss_pred cCcchhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 5 FSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGA 84 (1075)
Q Consensus 5 ~~~~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1075)
+.+...+...++.+.++++...+....++.++|+.+++|+.+.+++.+.+++..+...+..+.......+...+.. +..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 252 (571)
T TIGR02203 174 VSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIAS-LAL 252 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3445556667778888899999999999999999999999999988888877766655444433333333332221 111
Q ss_pred HHHHHHHHhhhhccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 001446 85 TVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIED 164 (1075)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~ 164 (1075)
++.+++.....+.+.+ +.|...++. ..+..++..+..+......+...+...+|+.++++.+++....
T Consensus 253 ~~~~~~g~~~~~~g~l-----t~g~l~a~~------~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~- 320 (571)
T TIGR02203 253 AVVLFIALFQAQAGSL-----TAGDFTAFI------TAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG- 320 (571)
T ss_pred HHHHHHHHHHHHcCCC-----CHhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-
Confidence 1111111111122222 444332221 2334455666777777888999999999998877543322110
Q ss_pred CCCCCCCCCCCCCCCccEEEEeEEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCC
Q 001446 165 KSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG 243 (1075)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~ 243 (1075)
. .......+.++++||+|+|++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 321 -~------~~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g 393 (571)
T TIGR02203 321 -T------RAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDG 393 (571)
T ss_pred -C------CCCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECC
Confidence 0 000112346999999999975 46799999999999999999999999999999999999999999999999
Q ss_pred cC------ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCC
Q 001446 244 VG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGD 314 (1075)
Q Consensus 244 ~~------~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~ 314 (1075)
.+ .+++++++||||+|++|++|++|||.++.. +..+++++.++++.++++++++++|.+.++ ++|.
T Consensus 394 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-----~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~ 468 (571)
T TIGR02203 394 HDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRT-----EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGV 468 (571)
T ss_pred EeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCC-----CCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCC
Confidence 65 346788999999999999999999998742 134678899999999999999999976544 5688
Q ss_pred CCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 315 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 315 ~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
+||||||||++||||++++|+++|||||||+||+++++.+++.+++ .++|+|+|||+.+.+..||+|+++++
T Consensus 469 ~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~ 542 (571)
T TIGR02203 469 LLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDD 542 (571)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999998876 37999999999999999999999986
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-47 Score=459.89 Aligned_cols=361 Identities=22% Similarity=0.314 Sum_probs=265.7
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 10 GKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVI 89 (1075)
Q Consensus 10 ~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (1075)
.+...+.++.++++...+.....++++|+.|+.|+.+.+++.+..++..+...+..+.......+..++. ......+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i 262 (574)
T PRK11160 186 KKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILAN---GLTVVLM 262 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3444556667778888888888999999999999999988888777666554443332222222211111 1111111
Q ss_pred HHHhhhhccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCC
Q 001446 90 LIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQR 169 (1075)
Q Consensus 90 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 169 (1075)
+ ++++.+..+..+.|...++.. +. ....+..+..+......+.+...+++|+.++++.+++......
T Consensus 263 ~----~~g~~~~~g~~t~g~l~a~~~--~~---~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~---- 329 (574)
T PRK11160 263 L----WLAAGGVGGNAQPGALIALFV--FA---ALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTT---- 329 (574)
T ss_pred H----HHHHHHhccccchhHHHHHHH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc----
Confidence 1 222222122223443222111 11 1111233344455667788888899999998765443211000
Q ss_pred CCCCCCCCCCccEEEEeEEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC---
Q 001446 170 NGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--- 245 (1075)
Q Consensus 170 ~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~--- 245 (1075)
. ......+.++++||+|.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 330 --~-~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~ 406 (574)
T PRK11160 330 --S-TAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD 406 (574)
T ss_pred --c-CCCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 0 001123469999999999764 579999999999999999999999999999999999999999999999975
Q ss_pred ---ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChh
Q 001446 246 ---SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLG 319 (1075)
Q Consensus 246 ---~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgG 319 (1075)
..++++|+||||+|++|++|++|||.++.+ ..+++++.++++.+++++++++ |.+.++ +.|.+||||
T Consensus 407 ~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~------~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgG 479 (574)
T PRK11160 407 YSEAALRQAISVVSQRVHLFSATLRDNLLLAAP------NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGG 479 (574)
T ss_pred CCHHHHHhheeEEcccchhhcccHHHHhhcCCC------ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHH
Confidence 346788999999999999999999998753 2467789999999999999999 987665 568899999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCCCcEEEecCCC
Q 001446 320 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRD 397 (1075)
Q Consensus 320 qkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~~~~~~~ 397 (1075)
||||++||||++++|+++|||||||+||+++++.+.+.+.+ .++|+|+|||+++.+..+|+|++|+++ ..++.+.+
T Consensus 480 qrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G--~i~~~g~~ 557 (574)
T PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNG--QIIEQGTH 557 (574)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCC--eEEEeCCH
Confidence 99999999999999999999999999999999999998875 489999999999999999999999863 34444444
Q ss_pred C
Q 001446 398 G 398 (1075)
Q Consensus 398 ~ 398 (1075)
+
T Consensus 558 ~ 558 (574)
T PRK11160 558 Q 558 (574)
T ss_pred H
Confidence 3
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-47 Score=464.65 Aligned_cols=368 Identities=20% Similarity=0.213 Sum_probs=267.1
Q ss_pred cCcchhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 5 FSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGA 84 (1075)
Q Consensus 5 ~~~~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1075)
+.+...+...+.++.++++...+.....+++.|+.|+.++.+.+++.+..+++.+...+..+..........+... +..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 254 (588)
T PRK13657 176 VMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAAST-ITM 254 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3444555555556666777778888889999999999999999988888877766554433332222222222111 111
Q ss_pred HHHHHHHHhhhhccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 001446 85 TVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIED 164 (1075)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~ 164 (1075)
+..+++....++.+.+ +.|...++. ..+..++..+..+......+.......+|+.++.+.+++...
T Consensus 255 ~~~~~~g~~~v~~g~l-----t~g~~~a~~------~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-- 321 (588)
T PRK13657 255 LAILVLGAALVQKGQL-----RVGEVVAFV------GFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRD-- 321 (588)
T ss_pred HHHHHHHHHHHHcCCc-----CHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--
Confidence 1111111111122332 444332221 122334445555566666777777778888776543322110
Q ss_pred CCCCCCCCCCCCCCCccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCc
Q 001446 165 KSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV 244 (1075)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~ 244 (1075)
. . .........+.++++||+|.||+++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 322 ~--~--~~~~~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~ 397 (588)
T PRK13657 322 P--P--GAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGT 397 (588)
T ss_pred C--C--CCCCcCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE
Confidence 0 0 00000111246999999999986567999999999999999999999999999999999999999999999996
Q ss_pred C------ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCC
Q 001446 245 G------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDE 315 (1075)
Q Consensus 245 ~------~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~ 315 (1075)
+ ..++++|+||||+|++|++|++|||.++.+ ..+++++.++++.++++++++++|.+.++ ++|.+
T Consensus 398 ~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~------~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~ 471 (588)
T PRK13657 398 DIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP------DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQ 471 (588)
T ss_pred EhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCC------CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCC
Confidence 5 346789999999999999999999998742 23577899999999999999999876543 56789
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCCCcEEEe
Q 001446 316 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVH 393 (1075)
Q Consensus 316 LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~~~ 393 (1075)
||||||||++|||||+++|+++|||||||+||+++++.+++.+++ .++|+|+||||++.++.+|+|++|+++ ...+
T Consensus 472 LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G--~i~~ 549 (588)
T PRK13657 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNG--RVVE 549 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECC--EEEE
Confidence 999999999999999999999999999999999999999998875 479999999999999999999999863 3444
Q ss_pred cCCCC
Q 001446 394 DKRDG 398 (1075)
Q Consensus 394 ~~~~~ 398 (1075)
.+.++
T Consensus 550 ~g~~~ 554 (588)
T PRK13657 550 SGSFD 554 (588)
T ss_pred eCCHH
Confidence 44433
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-47 Score=462.60 Aligned_cols=361 Identities=24% Similarity=0.332 Sum_probs=267.7
Q ss_pred cHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 13 MSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILII 92 (1075)
Q Consensus 13 ~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (1075)
....++..+++...+....++.+.|+.|+.++.+.+++.+..+...+...+..+..........++. ......++.+
T Consensus 180 ~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 256 (567)
T COG1132 180 SRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLS---SLGTVLVLAL 256 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3334444466666777777888899999999999877766665554443222222222211111111 1111111111
Q ss_pred hhhhccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCC
Q 001446 93 EPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGS 172 (1075)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 172 (1075)
+.+. ...+..+.|... .+...+..++..+..+......+.+...+++|+.++++.+++......
T Consensus 257 ~~~~---~~~~~~~~g~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~------- 320 (567)
T COG1132 257 GGFL---VLSGSLTVGALA------AFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD------- 320 (567)
T ss_pred HHHH---HHcCCCCHhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC-------
Confidence 1111 001112333221 222334445556667777777888889999999998876443221110
Q ss_pred CCCCCCCccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------c
Q 001446 173 RNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------S 246 (1075)
Q Consensus 173 ~~~~~~~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~ 246 (1075)
......+.|+++||+|.|++++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.+ .
T Consensus 321 -~~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~ 399 (567)
T COG1132 321 -PLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLD 399 (567)
T ss_pred -CCCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHH
Confidence 011223569999999999877899999999999999999999999999999999999999999999999975 4
Q ss_pred cccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChhHHHH
Q 001446 247 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQR 323 (1075)
Q Consensus 247 ~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqR 323 (1075)
.+|++|+||||+|++|++||+|||.++.+. .+++++.++++.+++++++.++|.+.++ +.|.+||||||||
T Consensus 400 ~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~------at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQr 473 (567)
T COG1132 400 SLRKRIGIVSQDPLLFSGTIRENIALGRPD------ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQR 473 (567)
T ss_pred HHHHhccEEcccceeecccHHHHHhcCCCC------CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHH
Confidence 578999999999999999999999998642 5678999999999999999999876554 4678999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCCCcEEEecCCCCccc
Q 001446 324 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSV 401 (1075)
Q Consensus 324 l~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~~~~~~~~~~~ 401 (1075)
++||||++++|+|++||||||+||++++..+.+.+++ .++|+|+|+||++.++.||+|++|+++ ..++.++|.+++
T Consensus 474 laiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G--~i~e~G~h~eLl 551 (567)
T COG1132 474 LAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNG--RIVERGTHEELL 551 (567)
T ss_pred HHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECC--EEEEecCHHHHH
Confidence 9999999999999999999999999999999998863 578999999999999999999999973 366666665553
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-47 Score=457.52 Aligned_cols=352 Identities=20% Similarity=0.301 Sum_probs=261.6
Q ss_pred cchhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 7 PAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATV 86 (1075)
Q Consensus 7 ~~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (1075)
+.+.+...+.++.++++...+....++.++|+.|+.|+.+.+++.+..++..+...+..+..........++.. +..++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 244 (529)
T TIGR02857 166 WAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT-LSVAL 244 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 33444555566666777778888889999999999999999888877766655543333332222222222111 11111
Q ss_pred HHHHHHhhhhccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCC
Q 001446 87 AVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKS 166 (1075)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~ 166 (1075)
.+ ++ .+..+..+..+.|...++ ......++..+..+......+.+....++|+.++++.+++.. ..
T Consensus 245 ~~-~~----~~~~~~~g~~t~g~~~~~------~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~---~~ 310 (529)
T TIGR02857 245 VA-VY----IGFRLLAGDLDLATGLFV------LLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA---GK 310 (529)
T ss_pred HH-HH----HHHHHHcCCCCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC---CC
Confidence 00 11 111111222244432211 122233445566667777888999999999998875322111 00
Q ss_pred CCCCCCCCCCCCCccEEEEeEEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC
Q 001446 167 PQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG 245 (1075)
Q Consensus 167 ~~~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~ 245 (1075)
.. ......+.++++||+|.||++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 311 ----~~-~~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~ 385 (529)
T TIGR02857 311 ----AP-VTAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVP 385 (529)
T ss_pred ----cC-CCCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEe
Confidence 00 001112469999999999864 479999999999999999999999999999999999999999999999975
Q ss_pred ------ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCC
Q 001446 246 ------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDEL 316 (1075)
Q Consensus 246 ------~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~L 316 (1075)
.+++++++||||+|++|++|++||+.++.+ ..+++++.++++.++++++++++|.+.++ ++|.+|
T Consensus 386 i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~------~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~L 459 (529)
T TIGR02857 386 LADADADSWRDQIAWVPQHPFLFAGTIAENIRLARP------DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGL 459 (529)
T ss_pred hhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCC------CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccC
Confidence 346788999999999999999999998743 23567899999999999999999976544 578899
Q ss_pred ChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEE
Q 001446 317 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSL 384 (1075)
Q Consensus 317 SgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l 384 (1075)
|||||||++||||++++|+++|||||||+||+++++.+++.+++ .++|+|+||||++.++.||+|++|
T Consensus 460 SgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 460 SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999999999999999998876 489999999999999999999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-47 Score=462.21 Aligned_cols=355 Identities=20% Similarity=0.260 Sum_probs=262.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q 001446 15 KEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWW-FGMIQDFLLKYLGATVAVILIIE 93 (1075)
Q Consensus 15 ~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 93 (1075)
+.++..+++...+.....+.++|+.|+.|+.+.+++.+..++..+...+..+.... ...+..++...+ .++.+++
T Consensus 195 ~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-- 270 (592)
T PRK10790 195 RVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALI--LCGLLML-- 270 (592)
T ss_pred HHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH--
Confidence 33445566777788888999999999999999888777766544433222211111 111111111111 0111111
Q ss_pred hhhccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCC
Q 001446 94 PFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSR 173 (1075)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1075)
++ ....+..+.|...++ ......+...+..+......+.+...+++|+.++++.+++.. .. .
T Consensus 271 --~~-~~~~g~is~g~l~a~------~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~---~~-~----- 332 (592)
T PRK10790 271 --FG-FSASGTIEVGVLYAF------ISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQY---GN-D----- 332 (592)
T ss_pred --HH-HHHCCCcCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC---CC-C-----
Confidence 11 111222344432221 122334445566677777889999999999988875432210 00 0
Q ss_pred CCCCCCccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------cc
Q 001446 174 NYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SD 247 (1075)
Q Consensus 174 ~~~~~~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~ 247 (1075)
......+.++++||+|.|++++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.+ ..
T Consensus 333 ~~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~ 412 (592)
T PRK10790 333 DRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSV 412 (592)
T ss_pred ccCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHH
Confidence 011123469999999999866789999999999999999999999999999999999999999999999975 35
Q ss_pred ccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChhHHHHH
Q 001446 248 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRL 324 (1075)
Q Consensus 248 ~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqRl 324 (1075)
++++|+||||+|++|++|++|||.++. ..+++++.++++.++++++++++|.+.++ +.|.+||||||||+
T Consensus 413 l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-------~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRi 485 (592)
T PRK10790 413 LRQGVAMVQQDPVVLADTFLANVTLGR-------DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLL 485 (592)
T ss_pred HHhheEEEccCCccccchHHHHHHhCC-------CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 678999999999999999999999974 23577899999999999999999987554 46789999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCCCcEEEecCCCCcc
Q 001446 325 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSS 400 (1075)
Q Consensus 325 ~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~~~~~~~~~~ 400 (1075)
+|||||+++|+++|||||||+||+++++.+.+.+++ .++|+|+||||++.++.+|+|++|++ |..++.+.++++
T Consensus 486 alARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~--G~i~~~G~~~~L 561 (592)
T PRK10790 486 ALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHR--GQAVEQGTHQQL 561 (592)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEEC--CEEEEEcCHHHH
Confidence 999999999999999999999999999999998875 37999999999999999999999986 334454444433
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=459.43 Aligned_cols=359 Identities=22% Similarity=0.313 Sum_probs=271.0
Q ss_pred cCcchhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 5 FSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGA 84 (1075)
Q Consensus 5 ~~~~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1075)
+.+...+...+.++.++++...+....+++++||.+++|+.+.+++.+.+++..+...+..+...+......++.. +
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 254 (576)
T TIGR02204 178 FGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVF-G-- 254 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--
Confidence 4455566777778888899999999999999999999999999988888877666554433332222222111110 1
Q ss_pred HHHHHHHHhhhhccccc-cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 001446 85 TVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIE 163 (1075)
Q Consensus 85 ~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~ 163 (1075)
....++ ++++.+. .+..+.|...++. .....++..+..+......+.....+.+|+.++++.+++....
T Consensus 255 ~~~~~~----~~g~~~v~~g~lt~g~~~~~~------~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 255 AIVGVL----WVGAHDVIAGKMSAGTLGQFV------FYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHH----HHHHHHHHcCCCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 111111 1222111 1222444322221 2223344566777778888999999999998887644322110
Q ss_pred CCCCCCCCCCCCCCCCccEEEEeEEEEcCCC--CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEe
Q 001446 164 DKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241 (1075)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~--~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~ 241 (1075)
... .....+..+.++++||+|.||++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 325 ~~~-----~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i 399 (576)
T TIGR02204 325 AHP-----KTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILL 399 (576)
T ss_pred CCC-----ccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 000 00001113469999999999753 57999999999999999999999999999999999999999999999
Q ss_pred CCcC------ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CC
Q 001446 242 PGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NW 312 (1075)
Q Consensus 242 ~~~~------~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~ 312 (1075)
||.+ ..++++|+|+||+|++|++|++|||.++.+. .+++++.++++.+++.++++++|.+.++ ++
T Consensus 400 ~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~------~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~ 473 (576)
T TIGR02204 400 DGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPD------ATDEEVEAAARAAHAHEFISALPEGYDTYLGER 473 (576)
T ss_pred CCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCC------CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCC
Confidence 9964 3456789999999999999999999987532 3567899999999999999999876543 56
Q ss_pred CCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCC
Q 001446 313 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 387 (1075)
Q Consensus 313 g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~ 387 (1075)
|.+||||||||++||||++++|+++|||||||+||+++++.+++.+++ .++|+|+|||+++.+..+|++++++++
T Consensus 474 g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g 550 (576)
T TIGR02204 474 GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQG 550 (576)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999999999988876 489999999999999999999999863
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=411.95 Aligned_cols=346 Identities=22% Similarity=0.338 Sum_probs=264.2
Q ss_pred hhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCcchhhHHH
Q 001446 32 THAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAK 111 (1075)
Q Consensus 32 ~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 111 (1075)
-|-|+||-|++|++|-++..+.-..+.+..++....-..++..|+.+.. ++...+.+++ .|+. +.+..+.|...
T Consensus 406 lNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~-lgll~gsll~--aY~V---t~q~ltVGDfV 479 (790)
T KOG0056|consen 406 LNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIG-LGLLAGSLLC--AYRV---TEQTLTVGDFV 479 (790)
T ss_pred hcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hHHhhhhhee--eeee---eecccccccee
Confidence 4889999999999999766665555444433333333344444444432 2333222221 1211 12223344322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCCCCCccEEEEeEEEEc
Q 001446 112 MLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVT 191 (1075)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~ 191 (1075)
+| ...++.+.+.+..+-..++.++.-..-.++++++++.++++.... +........+.|+|+||+|.|
T Consensus 480 lf------~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P------~a~pl~~~~G~i~fsnvtF~Y 547 (790)
T KOG0056|consen 480 LF------LTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLP------GAPPLKVTQGKIEFSNVTFAY 547 (790)
T ss_pred hH------HHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCC------CCCCccccCCeEEEEEeEEec
Confidence 22 234455555666666666667766666778888776655542211 111112235789999999999
Q ss_pred CCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEEEcCCCCCCcCC
Q 001446 192 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGT 265 (1075)
Q Consensus 192 ~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~~~~~t 265 (1075)
..++++|+|+||+++||+.++++||||+||||++|+|.++++..+|.|.+||+| ..+|+.||.|||+..+|+.|
T Consensus 548 ~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdT 627 (790)
T KOG0056|consen 548 DPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDT 627 (790)
T ss_pred CCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecce
Confidence 889999999999999999999999999999999999999999999999999987 45789999999999999999
Q ss_pred HHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChhHHHHHHHHHHHcCCCCEEEEeCC
Q 001446 266 LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDEC 342 (1075)
Q Consensus 266 v~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqRl~lAral~~~p~illLDEp 342 (1075)
+..||.|+.+. .+++++.++.+..++++.+-.+|++..+ ++|-.||||||||||+||+++++|.|++|||+
T Consensus 628 I~yNIryak~~------AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEA 701 (790)
T KOG0056|consen 628 ILYNIRYAKPS------ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEA 701 (790)
T ss_pred eeeheeecCCC------CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcch
Confidence 99999998643 4667899999999999999999988654 67889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCCCcEEEecCCCCccccc
Q 001446 343 TSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVT 403 (1075)
Q Consensus 343 ts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~~~~~~~~~~~~~ 403 (1075)
|||||..+++.|...|.+ .++|.|+|.|+++.+-++|.|+++++ |.+++.++|.+++..
T Consensus 702 TSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~--G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 702 TSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISN--GRIVERGRHEELLKR 762 (790)
T ss_pred hhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeC--CeEeecCcHHHHHhc
Confidence 999999999999999876 59999999999999999999999986 457777777666543
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=463.29 Aligned_cols=356 Identities=21% Similarity=0.260 Sum_probs=271.4
Q ss_pred cCcchhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 5 FSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGA 84 (1075)
Q Consensus 5 ~~~~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1075)
+++.+.+...+..+..+++...+.....++++||.++.|+.+.+++.+.+++..+...+..+..........++.. +
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~-- 374 (694)
T TIGR01846 298 VGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQK-L-- 374 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--
Confidence 4455556666666777788888888889999999999999999999888877665544433332222222222111 1
Q ss_pred HHHHHHHHhhhhccccc-cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 001446 85 TVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIE 163 (1075)
Q Consensus 85 ~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~ 163 (1075)
....++ ++++.+. .+..+.|...++. .....++..+..+......+.....+.+|+.++++.+++....
T Consensus 375 ~~~~il----~~g~~lv~~g~it~G~lia~~------~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 444 (694)
T TIGR01846 375 TFAILL----WFGAHLVIGGALSPGQLVAFN------MLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA 444 (694)
T ss_pred HHHHhH----HHHHHHHHcCCCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC
Confidence 111111 2222221 1233455432222 2233445566677777888999999999999887654432110
Q ss_pred CCCCCCCCCCCCCCCCccEEEEeEEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeC
Q 001446 164 DKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 242 (1075)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~-~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~ 242 (1075)
. ........+.++++||+|.|++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+|
T Consensus 445 -~------~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~id 517 (694)
T TIGR01846 445 -G------LAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVD 517 (694)
T ss_pred -C------CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 0 0001112356999999999974 4579999999999999999999999999999999999999999999999
Q ss_pred CcC------ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCC
Q 001446 243 GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWG 313 (1075)
Q Consensus 243 ~~~------~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g 313 (1075)
|.+ .+++++|+||||+|++|++|++|||.++.+ ..+++++.++++.++++++++++|.+.++ +.|
T Consensus 518 g~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~------~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g 591 (694)
T TIGR01846 518 GVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP------GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKG 591 (694)
T ss_pred CEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC------CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCC
Confidence 975 346788999999999999999999998642 24677899999999999999999976554 567
Q ss_pred CCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 314 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 314 ~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++ .++|+|+|||+++.++.+|+|++|++
T Consensus 592 ~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~ 666 (694)
T TIGR01846 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEK 666 (694)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeC
Confidence 89999999999999999999999999999999999999999998876 47999999999999999999999986
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-48 Score=379.13 Aligned_cols=197 Identities=28% Similarity=0.382 Sum_probs=173.7
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-------ccccccEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-------~~~~~~i~ 253 (1075)
.|+++|++++|. +..+|+++|++|++||+++|+||||||||||||+|.|+.+|++|+|.++|.+ ..+|+++|
T Consensus 2 mi~i~~l~K~fg-~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEeC-CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 589999999995 6789999999999999999999999999999999999999999999999953 24678999
Q ss_pred EEcCCCCCCc-CCHHHHhcCCCCC-CcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 254 YVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 254 ~v~Q~~~~~~-~tv~~ni~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
+|||+..+|+ .|+.||+.++... .+.......+...+.|+++||.+..+.+| .+|||||||||||||||+
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP--------~qLSGGQqQRVAIARALa 152 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP--------AQLSGGQQQRVAIARALA 152 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc--------cccCcHHHHHHHHHHHHc
Confidence 9999999887 5999999986432 12222234456778999999999999999 799999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHH---HhcCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKV---RAMGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l---~~~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
.+|+++|+|||||||||+...++.+.+ .+.|.|.|+|||++.+++ .+|||+.||+
T Consensus 153 M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~ 211 (240)
T COG1126 153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQ 211 (240)
T ss_pred CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeC
Confidence 999999999999999999998877654 457999999999999986 5899999986
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=443.85 Aligned_cols=349 Identities=21% Similarity=0.292 Sum_probs=260.6
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 10 GKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVI 89 (1075)
Q Consensus 10 ~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (1075)
.+...+.++..+++...+....+++++||.|+.|+.+.+++.+.+++..+...+..+..........++.. +..+ .+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~ 242 (544)
T TIGR01842 166 KKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRI-VLQS--LV 242 (544)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HH
Confidence 33444455566677777788888999999999999999888888777665544333322222221111111 1111 11
Q ss_pred HHHhhhhccccc-cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCC
Q 001446 90 LIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQ 168 (1075)
Q Consensus 90 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 168 (1075)
+ ++++.+. .+..+.|...++ ...+..++..+..+......+.+...+.+|+.++++.+++... .
T Consensus 243 ~----~~g~~l~~~g~it~g~l~a~------~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~--~--- 307 (544)
T TIGR01842 243 L----GLGAYLAIDGEITPGMMIAG------SILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP--A--- 307 (544)
T ss_pred H----HHHHHHHHcCCCCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC--C---
Confidence 1 1222211 122244433221 2223344556677777788889999999999988765432210 0
Q ss_pred CCCCCCCCCCCccEEEEeEEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC--
Q 001446 169 RNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-- 245 (1075)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-- 245 (1075)
. ......+.++++|++|.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 308 --~--~~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~ 383 (544)
T TIGR01842 308 --M--PLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLK 383 (544)
T ss_pred --C--CCCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehh
Confidence 0 001123469999999999753 689999999999999999999999999999999999999999999999965
Q ss_pred ----ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCCh
Q 001446 246 ----SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSL 318 (1075)
Q Consensus 246 ----~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSg 318 (1075)
..+++.++||||+|++|++|++||+.++.+ ..+++++.++++.++++++++++|.+.++ ++|.+|||
T Consensus 384 ~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSg 457 (544)
T TIGR01842 384 QWDRETFGKHIGYLPQDVELFPGTVAENIARFGE------NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSG 457 (544)
T ss_pred hCCHHHHhhheEEecCCcccccccHHHHHhccCC------CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCH
Confidence 235678999999999999999999986432 24567888999999999999999876443 56889999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 319 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 319 GqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
|||||++||||++++|+++|||||||+||+++++.+.+.+++ .++|+|+|||+++.+..||+|+++++
T Consensus 458 Gq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~ 528 (544)
T TIGR01842 458 GQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQD 528 (544)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999998865 47999999999999999999999986
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=444.84 Aligned_cols=356 Identities=19% Similarity=0.187 Sum_probs=257.5
Q ss_pred cchhhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 7 PAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATV 86 (1075)
Q Consensus 7 ~~~~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (1075)
+...+...+.++..+++...+....+++++|+.|+.|+.+.+++.+..++..+...+..+..........++. .+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 254 (585)
T TIGR01192 178 QRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMAS-TISM-- 254 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--
Confidence 3333344444455566667777778899999999999999988888777665554333322222211111111 1111
Q ss_pred HHHHHHhhhhccccc-cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCC
Q 001446 87 AVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDK 165 (1075)
Q Consensus 87 ~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~ 165 (1075)
..+++ +++.+. .+..+.|...++. ..+..++..+..+......+.......+|+.++.+.+++......
T Consensus 255 ~~v~~----~g~~~v~~g~it~g~l~a~~------~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~ 324 (585)
T TIGR01192 255 MCILV----IGTVLVIKGELSVGEVIAFI------GFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPAD 324 (585)
T ss_pred HHHHH----HHHHHHHcCCCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcc
Confidence 11111 122111 1222444332221 122233344555666667778888888998887654332111000
Q ss_pred CCCCCCCCCCCCCCccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC
Q 001446 166 SPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG 245 (1075)
Q Consensus 166 ~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~ 245 (1075)
........+.++++||+|.|++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 325 ------~~~~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 398 (585)
T TIGR01192 325 ------APELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGID 398 (585)
T ss_pred ------CCCCCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEE
Confidence 00001113469999999999866679999999999999999999999999999999999999999999999964
Q ss_pred ------ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCC
Q 001446 246 ------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDEL 316 (1075)
Q Consensus 246 ------~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~L 316 (1075)
..+++.++||||+|++|++|++||+.++.+ ..+++++.++++.+++++++.++|.+.++ ++|.+|
T Consensus 399 ~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~------~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~L 472 (585)
T TIGR01192 399 INTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE------GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRL 472 (585)
T ss_pred hhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCC------CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCC
Confidence 245678999999999999999999998743 23567788999999999999888875443 568899
Q ss_pred ChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCC
Q 001446 317 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 387 (1075)
Q Consensus 317 SgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~ 387 (1075)
|||||||++|||||+++|+++|||||||+||+++++.+.+.+.+ .++|+|+|||+++.+..+|+|++|+++
T Consensus 473 SgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G 545 (585)
T TIGR01192 473 SGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQG 545 (585)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECC
Confidence 99999999999999999999999999999999999999998865 489999999999999999999999863
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=443.13 Aligned_cols=350 Identities=17% Similarity=0.201 Sum_probs=256.2
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 10 GKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVI 89 (1075)
Q Consensus 10 ~~~~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (1075)
.+...+.++..+++...+.....+.++||.|+.|+.+.+++.+..++..+...+..+..... ..............+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 238 (569)
T PRK10789 162 HERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARF---DPTIYIAIGMANLLA 238 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 33344445555666667777778899999999999999888877765544433322222111 111111011111111
Q ss_pred HHHhhhhccccc-cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCC
Q 001446 90 LIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQ 168 (1075)
Q Consensus 90 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 168 (1075)
++ +++.+. .+..+.|...++.. ....++..+..+......+.+...+.+|+.++++.+++.....
T Consensus 239 l~----~g~~lv~~g~lt~g~l~a~~~------~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---- 304 (569)
T PRK10789 239 IG----GGSWMVVNGSLTLGQLTSFVM------YLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---- 304 (569)
T ss_pred HH----HHHHHHHcCCcCHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC----
Confidence 11 111111 12224443322211 1223334455566667788888999999998876543211100
Q ss_pred CCCCCCCCCCCccEEEEeEEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC--
Q 001446 169 RNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-- 245 (1075)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~v~~~~~~~-~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-- 245 (1075)
.......+.++++|++|.|+++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 305 ----~~~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~ 380 (569)
T PRK10789 305 ----EPVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLT 380 (569)
T ss_pred ----CCCCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHh
Confidence 0001123469999999999753 579999999999999999999999999999999999999999999999975
Q ss_pred ----ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCCh
Q 001446 246 ----SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSL 318 (1075)
Q Consensus 246 ----~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSg 318 (1075)
..++++++|+||+|++|++|++|||.++.+ ..+++++.++++.+++++++.++|.+.++ +.|.+|||
T Consensus 381 ~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~------~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSg 454 (569)
T PRK10789 381 KLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP------DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSG 454 (569)
T ss_pred hCCHHHHHhheEEEccCCeeccccHHHHHhcCCC------CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCH
Confidence 245678999999999999999999998743 23567888999999999999999876544 56789999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 319 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 319 GqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
|||||++||||++++|+++|||||||+||+++++.+.+.+++ .++|+|+|||+++.++.+|+|++|++
T Consensus 455 Gq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~ 524 (569)
T PRK10789 455 GQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQH 524 (569)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeC
Confidence 999999999999999999999999999999999999998875 58999999999999999999999986
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=394.79 Aligned_cols=336 Identities=23% Similarity=0.300 Sum_probs=253.5
Q ss_pred HHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc-
Q 001446 24 RQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKP- 102 (1075)
Q Consensus 24 r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 102 (1075)
.......+.|+|.|++.|....-.++|.+..........+.-..+..++.....+-..+... ++- .+..+..
T Consensus 198 ~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~---iLg----~GA~Lvi~ 270 (580)
T COG4618 198 NQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSA---VLG----LGAWLVIK 270 (580)
T ss_pred HHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHh----cceeeEEc
Confidence 34677788899999999999999999988877665554433333333333322222111111 111 1222222
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCCCCCccE
Q 001446 103 DTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYI 182 (1075)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 182 (1075)
+..+.|. +++.- -...-....+-..+..++.+...+.+.+|+.+++...+.... ....+.+.+.+
T Consensus 271 ge~t~G~--mIA~S----Il~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~---------~m~LP~P~g~L 335 (580)
T COG4618 271 GEITPGM--MIAGS----ILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE---------RMPLPAPQGAL 335 (580)
T ss_pred CcCCcch--hhHHH----HHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC---------CCCCCCCCcee
Confidence 2223332 22110 011122233445667788888888889999888765443211 01112235689
Q ss_pred EEEeEEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEEE
Q 001446 183 EFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 255 (1075)
Q Consensus 183 ~~~~v~~~~~~-~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v 255 (1075)
.++++++..|+ .+++++++||++++||.++|+||||||||||.|+|.|.|+|.+|.|++||-+ ..+.++|||+
T Consensus 336 ~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYL 415 (580)
T COG4618 336 SVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYL 415 (580)
T ss_pred eEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcC
Confidence 99999998775 4589999999999999999999999999999999999999999999999965 3456899999
Q ss_pred cCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChhHHHHHHHHHHHcC
Q 001446 256 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYH 332 (1075)
Q Consensus 256 ~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqRl~lAral~~ 332 (1075)
||+-.+|.|||.|||+-.. ++.+.+.+.++.+..+.++++-++|+++++ +.|..|||||||||+||||||.
T Consensus 416 PQdVeLF~GTIaeNIaRf~------~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG 489 (580)
T COG4618 416 PQDVELFDGTIAENIARFG------EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG 489 (580)
T ss_pred cccceecCCcHHHHHHhcc------ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcC
Confidence 9999999999999997432 234667899999999999999999998877 4578999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH---HhcCCeEEEEecChhhHhhCCeEEEEcCC
Q 001446 333 KPKFAILDECTSAVTTDMEERFCAKV---RAMGTSCITISHRPALVAFHDVVLSLDGE 387 (1075)
Q Consensus 333 ~p~illLDEpts~LD~~~~~~i~~~l---~~~~~t~i~vtH~~~~~~~~d~i~~l~~~ 387 (1075)
+|.+++||||-|+||.+.|..+.+.+ ++.|.|+|+|||+++.+..+|+|++|+++
T Consensus 490 ~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G 547 (580)
T COG4618 490 DPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDG 547 (580)
T ss_pred CCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCC
Confidence 99999999999999999999998876 45799999999999999999999999863
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-46 Score=377.73 Aligned_cols=199 Identities=28% Similarity=0.359 Sum_probs=176.8
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-ccccccEEEEcCCC
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRP 259 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-~~~~~~i~~v~Q~~ 259 (1075)
.++++++++.|++ ..+|+|+||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|.. .....+++||||++
T Consensus 3 ~l~i~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 3 LLEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred eEEEEeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 5889999999964 789999999999999999999999999999999999999999999999964 34456899999999
Q ss_pred CCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEEE
Q 001446 260 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 338 (1075)
Q Consensus 260 ~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~ill 338 (1075)
.+++ .||+||+.++............+++.++|+.+||.++.+++| .+|||||||||||||||+.+|++|+
T Consensus 82 ~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P--------~qLSGGMrQRVaiARAL~~~P~lLL 153 (248)
T COG1116 82 ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP--------HQLSGGMRQRVAIARALATRPKLLL 153 (248)
T ss_pred cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc--------cccChHHHHHHHHHHHHhcCCCEEE
Confidence 8776 699999999987644333344567889999999999999999 7999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHH----hcCCeEEEEecChhhH-hhCCeEEEEcCCC
Q 001446 339 LDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALV-AFHDVVLSLDGEG 388 (1075)
Q Consensus 339 LDEpts~LD~~~~~~i~~~l~----~~~~t~i~vtH~~~~~-~~~d~i~~l~~~g 388 (1075)
||||++|||..++..+.+.+. +.++|+++||||.+.. ..+|||++|.+..
T Consensus 154 lDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P 208 (248)
T COG1116 154 LDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRP 208 (248)
T ss_pred EcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCC
Confidence 999999999999998887654 4689999999999876 5699999998753
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=472.63 Aligned_cols=359 Identities=18% Similarity=0.243 Sum_probs=258.5
Q ss_pred HHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 001446 23 YRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKP 102 (1075)
Q Consensus 23 ~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (1075)
+-..+....++.++|+.|+.|+.+.+++.+..+...+..........|......++...+...++++.+.. .+.+.
T Consensus 1136 l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~-~~~~~--- 1211 (1560)
T PTZ00243 1136 VFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIG-TMLRA--- 1211 (1560)
T ss_pred HHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcc---
Confidence 34566777788999999999999998887777766655444344445554443333222111111111111 11111
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccC--C-------------C-
Q 001446 103 DTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIED--K-------------S- 166 (1075)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~--~-------------~- 166 (1075)
+..+.|... .+......+...+..+......+......++|+.++++..++..... . +
T Consensus 1212 ~~~~~g~l~------~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 1285 (1560)
T PTZ00243 1212 TSQEIGLVS------LSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADV 1285 (1560)
T ss_pred CCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccccccccccc
Confidence 111222111 11122233444555666666778888888899988875322211000 0 0
Q ss_pred -----CCCCCCC---CCCCCCccEEEEeEEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCcc
Q 001446 167 -----PQRNGSR---NYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 237 (1075)
Q Consensus 167 -----~~~~~~~---~~~~~~~~i~~~~v~~~~~~~-~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G 237 (1075)
....... ...+..+.|+|+||+|+|+++ .++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|
T Consensus 1286 ~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G 1365 (1560)
T PTZ00243 1286 TGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGG 1365 (1560)
T ss_pred ccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 0000000 011123579999999999765 4599999999999999999999999999999999999999999
Q ss_pred EEEeCCcC------ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc-
Q 001446 238 HIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI- 310 (1075)
Q Consensus 238 ~i~~~~~~------~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~- 310 (1075)
+|.+||.+ .++|++|+||||+|.+|++|||+||.... ..++++++++++.+++++++.++|.+.++
T Consensus 1366 ~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~-------~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~ 1438 (1560)
T PTZ00243 1366 EIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL-------EASSAEVWAALELVGLRERVASESEGIDSR 1438 (1560)
T ss_pred EEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc-------CCCHHHHHHHHHHCCChHHHhhCccccccc
Confidence 99999976 35788999999999999999999996431 34678899999999999999999876554
Q ss_pred --CCCCCCChhHHHHHHHHHHHcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEc
Q 001446 311 --NWGDELSLGEQQRLGMARLFYHK-PKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLD 385 (1075)
Q Consensus 311 --~~g~~LSgGqkqRl~lAral~~~-p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~ 385 (1075)
+.|.+||||||||++|||||+++ |+|||||||||+||+++++.+.+.+++ .++|+|+|+||++.+..||+|++|+
T Consensus 1439 vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1439 VLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMD 1518 (1560)
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEE
Confidence 56889999999999999999996 899999999999999999999999876 4899999999999999999999998
Q ss_pred CCCcEEEecCCCCcc
Q 001446 386 GEGEWRVHDKRDGSS 400 (1075)
Q Consensus 386 ~~g~~~~~~~~~~~~ 400 (1075)
+ |..++.+.+.++
T Consensus 1519 ~--G~VvE~Gt~~eL 1531 (1560)
T PTZ00243 1519 H--GAVAEMGSPREL 1531 (1560)
T ss_pred C--CEEEEECCHHHH
Confidence 6 345555544433
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=386.80 Aligned_cols=205 Identities=27% Similarity=0.366 Sum_probs=183.3
Q ss_pred cEEEEeEEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC---------cc
Q 001446 181 YIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SD 247 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~----~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~---------~~ 247 (1075)
+|++++|++.|+.+ .++|+|+||+|++||+.+|+|.||+|||||+|++.++..|++|+|.++|.+ ..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 47899999998752 469999999999999999999999999999999999999999999999964 23
Q ss_pred ccccEEEEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHH
Q 001446 248 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 326 (1075)
Q Consensus 248 ~~~~i~~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~l 326 (1075)
.|++||++||++.++. .||.+|++||+......+.....++.++|+.+||.+..+++| .+|||||||||+|
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP--------~qLSGGQKQRVaI 152 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP--------AQLSGGQKQRVAI 152 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc--------hhcCcchhhHHHH
Confidence 5789999999999887 699999999988766444455678899999999999999999 7999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcCCCcEEEecC
Q 001446 327 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEWRVHDK 395 (1075)
Q Consensus 327 Aral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~~g~~~~~~~ 395 (1075)
||||+.+|+|||.|||||||||++.+.|++.|++ .|.|+++|||.++.++ .||++.+|++ |..++.+
T Consensus 153 ARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~--G~lvE~G 224 (339)
T COG1135 153 ARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQ--GRLVEEG 224 (339)
T ss_pred HHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeC--CEEEEec
Confidence 9999999999999999999999999999998864 5999999999999996 6999999986 3344433
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=472.85 Aligned_cols=352 Identities=18% Similarity=0.205 Sum_probs=257.2
Q ss_pred HHHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cccc
Q 001446 22 EYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF-AGNL 100 (1075)
Q Consensus 22 ~~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l 100 (1075)
.+-..+.....+.++|++|+.|+.+.++..+..+...+..........|++....++. .++..++.....+ .+.+
T Consensus 1142 ~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~ 1217 (1522)
T TIGR00957 1142 PVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVG----NCIVLFAALFAVISRHSL 1217 (1522)
T ss_pred HHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCC
Confidence 3334566677889999999999988776666655544443332333334433322221 1111111100011 1222
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCCCCCc
Q 001446 101 KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEAN 180 (1075)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1075)
+.|... .+......+...+..+...+..++....+++|+.++.+.+++...... .......++..+
T Consensus 1218 -----~~g~l~------~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~---~~~~~~~wp~~g 1283 (1522)
T TIGR00957 1218 -----SAGLVG------LSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQ---ETAPPSGWPPRG 1283 (1522)
T ss_pred -----CHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc---CCCCCCCCCCCC
Confidence 223211 111222334445566677778888888999999998765443211000 000011123346
Q ss_pred cEEEEeEEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEE
Q 001446 181 YIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~-~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~ 253 (1075)
.|+|+||+++|+++ .++|+|+||+|++||++||||++|||||||+++|.|+++|++|+|.+||.+ .++|++|+
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~ 1363 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKIT 1363 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCe
Confidence 79999999999754 579999999999999999999999999999999999999999999999976 35788999
Q ss_pred EEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChhHHHHHHHHHHH
Q 001446 254 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 330 (1075)
Q Consensus 254 ~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqRl~lAral 330 (1075)
||||+|.+|++|||+||... ...++++++++++.+++++++.++|.+.++ +.|.+||||||||++|||||
T Consensus 1364 iVpQdp~LF~gTIr~NLdp~-------~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARAL 1436 (1522)
T TIGR00957 1364 IIPQDPVLFSGSLRMNLDPF-------SQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARAL 1436 (1522)
T ss_pred EECCCCcccCccHHHHcCcc-------cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999732 124678899999999999999999876554 56789999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCCCcEEEecCCCCcc
Q 001446 331 YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSS 400 (1075)
Q Consensus 331 ~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~~~~~~~~~~ 400 (1075)
+++|+|||||||||+||.++++.+.+.+++ .++|+|+|+||++.+..+|+|++|++ |..++.+.+.++
T Consensus 1437 Lr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~--G~IvE~G~~~eL 1506 (1522)
T TIGR00957 1437 LRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDK--GEVAEFGAPSNL 1506 (1522)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEEC--CEEEEECCHHHH
Confidence 999999999999999999999999999976 48999999999999999999999986 345555554443
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-44 Score=392.31 Aligned_cols=181 Identities=23% Similarity=0.261 Sum_probs=137.5
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEc
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~Vp 915 (1075)
.|.|+||+|.|++++.++++++|-|.++++||+|||+|+|||||++++.+...|..|.|....+ .+++...
T Consensus 389 vi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H---------~~~~~y~ 459 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH---------NKLPRYN 459 (614)
T ss_pred eEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc---------ccchhhh
Confidence 5899999999998888999999999999999999999999999999999999999999864333 1233223
Q ss_pred CCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCccccccc-ccchHHHHHHHHhCCchhhhhhhccCCccccccccCCC
Q 001446 916 QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTT-NILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 994 (1075)
Q Consensus 916 QdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~-~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 994 (1075)
|. ..+.++|-....+-...+. + ....+++..+|...||... .....-++||
T Consensus 460 Qh-------~~e~ldl~~s~le~~~~~~------------~~~~~~e~~r~ilgrfgLtgd---------~q~~p~~~LS 511 (614)
T KOG0927|consen 460 QH-------LAEQLDLDKSSLEFMMPKF------------PDEKELEEMRSILGRFGLTGD---------AQVVPMSQLS 511 (614)
T ss_pred hh-------hHhhcCcchhHHHHHHHhc------------cccchHHHHHHHHHHhCCCcc---------ccccchhhcc
Confidence 32 2233333211111111111 1 1234567777888777421 1111235799
Q ss_pred hhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHhcCceEEEecCCCCchh
Q 001446 995 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIP 1053 (1075)
Q Consensus 995 gGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~~~~TvI~IaHRls~i~ 1053 (1075)
+|||-|+++||++++.|.||||||||++||.++...+.+.+.+..-+||.|+|...+|.
T Consensus 512 ~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~ 570 (614)
T KOG0927|consen 512 DGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLIS 570 (614)
T ss_pred cccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHH
Confidence 99999999999999999999999999999999999999999888889999999987664
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=369.57 Aligned_cols=198 Identities=30% Similarity=0.416 Sum_probs=170.7
Q ss_pred EEEEeEEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC---------c-cc
Q 001446 182 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------S-DL 248 (1075)
Q Consensus 182 i~~~~v~~~~~~~---~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~---------~-~~ 248 (1075)
++++||++.|..+ .++|+++||+|++||+++|+|||||||||||++|.|+..|++|.|.++|.+ . -.
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 5789999988643 379999999999999999999999999999999999999999999999954 1 12
Q ss_pred cccEEEEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHh-cCCCCcccCCCCCCChhHHHHHHH
Q 001446 249 NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD-RYPPEKEINWGDELSLGEQQRLGM 326 (1075)
Q Consensus 249 ~~~i~~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~~g~~LSgGqkqRl~l 326 (1075)
+++||||||+..+.+ .|++||+.+|.............+..++++.+||.+... +.| .+|||||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p--------~eLSGGqqQRVAI 153 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP--------SELSGGQQQRVAI 153 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc--------hhcCHHHHHHHHH
Confidence 467999999998655 699999998754433222123456778899999997777 667 6999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHhhCCeEEEEcCC
Q 001446 327 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 387 (1075)
Q Consensus 327 Aral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~~~d~i~~l~~~ 387 (1075)
||||+.+|+++|.||||.+||.++.+.+++.+++ .|+|+|+||||+....+|||++.+.++
T Consensus 154 ARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG 218 (226)
T COG1136 154 ARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDG 218 (226)
T ss_pred HHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999988764 488999999999999999999999864
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-45 Score=364.97 Aligned_cols=197 Identities=27% Similarity=0.373 Sum_probs=174.8
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 254 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 254 (1075)
+|+|+||++.|. ++.+++|+||+|++||+++++|||||||||+||+|.++++|++|+|.++|.+ .++|++|||
T Consensus 1 MI~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 1 MIEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred CceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 479999999996 6789999999999999999999999999999999999999999999999975 357899999
Q ss_pred EcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCCh--hHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 255 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 255 v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
|-|..-+|+ .||.|||.+-....+..+...++++.+.++.++|+ ++.+++| ++|||||||||.+||||+
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP--------~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP--------HELSGGQQQRVGVARALA 151 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc--------hhcCcchhhHHHHHHHHh
Confidence 999987766 69999998754433333334567788999999996 4899999 799999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~----~~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
.+|+++|||||++||||-++..+.+.++ +.++|+|+||||++.. +.+|+|.+|++
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~ 211 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDA 211 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecC
Confidence 9999999999999999999999888764 3599999999999875 78999999985
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=346.90 Aligned_cols=198 Identities=26% Similarity=0.357 Sum_probs=178.1
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC---------cccccc
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLNKE 251 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~---------~~~~~~ 251 (1075)
+|+|+||++.|+++.++|+|+||+|++||++.|+||||||||||+|+|.+..+|++|+|.++|.+ .-+|++
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 47899999999999889999999999999999999999999999999999999999999999975 135789
Q ss_pred EEEEcCCCCCC-cCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHH
Q 001446 252 IFYVPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 330 (1075)
Q Consensus 252 i~~v~Q~~~~~-~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral 330 (1075)
||+|||+.-+. ..||.||++|+....+.......+++.++|+.+||.+....+| .+||||||||++||||+
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP--------~~LSGGEQQRvaIARAi 152 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP--------SQLSGGEQQRVAIARAI 152 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc--------cccCchHHHHHHHHHHH
Confidence 99999998765 4699999999987655544455678889999999999999999 69999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHhh-CCeEEEEcC
Q 001446 331 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSLDG 386 (1075)
Q Consensus 331 ~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~~-~d~i~~l~~ 386 (1075)
+.+|++||.||||.+|||....+|++.+.+ .|+||++.|||.+++.. -.+++.+++
T Consensus 153 V~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~ 212 (223)
T COG2884 153 VNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALED 212 (223)
T ss_pred ccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeC
Confidence 999999999999999999999998887754 69999999999999975 467788875
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=378.39 Aligned_cols=348 Identities=21% Similarity=0.314 Sum_probs=262.0
Q ss_pred HHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhccccccC
Q 001446 26 LHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEP--FFAGNLKPD 103 (1075)
Q Consensus 26 ~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~ 103 (1075)
.++.+. |=|+||.|+.|+.|..++....+...+...+......++++.|..+... ....+++..+ ...+.+
T Consensus 125 aidsLl-nfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~---~l~~~m~~s~~~v~~g~~--- 197 (497)
T COG5265 125 AIDSLL-NFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFST---GLRVMMTMSALGVEEGQL--- 197 (497)
T ss_pred HHHHHh-hhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHhhcHHHHhhccC---
Confidence 444443 7889999999999998777666665555444443445555555544321 1111111111 223333
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCC-CCCccE
Q 001446 104 TSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYF-SEANYI 182 (1075)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i 182 (1075)
+.|.......+ +......+..+..++..+.+...-.++++++.+.+.+...... . ...+ ...+.+
T Consensus 198 --TvgD~V~~Nal------l~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pd-a-----~~L~~~~~g~v 263 (497)
T COG5265 198 --TVGDLVNVNAL------LFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPD-A-----PPLWPVRLGAV 263 (497)
T ss_pred --CchhHHhHHHH------HhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCC-C-----ccccccccceE
Confidence 44433222221 1222223334455667777777667777666554443321100 0 0111 234679
Q ss_pred EEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEEEc
Q 001446 183 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVP 256 (1075)
Q Consensus 183 ~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~ 256 (1075)
.|+||+|.|...+++|+++||++++|+.++|+||+|+||||++++|.+++++++|.|.++|++ ..+|+.||.||
T Consensus 264 ~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VP 343 (497)
T COG5265 264 AFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVP 343 (497)
T ss_pred EEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCc
Confidence 999999999888999999999999999999999999999999999999999999999999986 35788999999
Q ss_pred CCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChhHHHHHHHHHHHcCC
Q 001446 257 QRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHK 333 (1075)
Q Consensus 257 Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqRl~lAral~~~ 333 (1075)
|+..+|+.|+..|+.|+.+ ..+++++..+++.+.+++++..+|.+..+ ++|-.|||||||||||||+++++
T Consensus 344 QDtvLFNDti~yni~ygr~------~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~ 417 (497)
T COG5265 344 QDTVLFNDTIAYNIKYGRP------DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKN 417 (497)
T ss_pred ccceehhhhHHHHHhccCc------cccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcC
Confidence 9999999999999999864 35677899999999999999999987654 67889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCCCcEEEecCCCCcccc
Q 001446 334 PKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVV 402 (1075)
Q Consensus 334 p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~~~~~~~~~~~~ 402 (1075)
|+|++|||+||+||.++++.++..|++ .|+|.++|.|+++.+..+|.|+++++ |.+++.++|.+++.
T Consensus 418 p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~--g~i~erg~h~~ll~ 486 (497)
T COG5265 418 PPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDN--GRIVERGTHEELLA 486 (497)
T ss_pred CCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeC--CEEEecCcHHHHHH
Confidence 999999999999999999999999986 59999999999999999999999997 45777777766643
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=454.04 Aligned_cols=352 Identities=19% Similarity=0.268 Sum_probs=252.4
Q ss_pred HHHHHHHHHhhHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 001446 23 YRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKP 102 (1075)
Q Consensus 23 ~r~~l~~i~~~~e~I~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (1075)
+...+.....+.++|++|+.|+.+.+++.+..+...+.+........|+.....++...+...+ .++. ++....
T Consensus 1063 l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~-~~l~----~~~~~~- 1136 (1490)
T TIGR01271 1063 IFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAV-TFIA----IGTNQD- 1136 (1490)
T ss_pred HHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----HHHhcC-
Confidence 3345666678899999999999999888877765444443333333444433332221111111 1111 111111
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCC-----------CCCC
Q 001446 103 DTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSP-----------QRNG 171 (1075)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~-----------~~~~ 171 (1075)
+....|.. +. ....+...+..+......+.....+++|+.++.+.+++........ ....
T Consensus 1137 ~~g~~g~~--l~-------~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 1207 (1490)
T TIGR01271 1137 GEGEVGII--LT-------LAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPH 1207 (1490)
T ss_pred CccHHHHH--HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCC
Confidence 11122211 11 1122223344455556677777888899988876544321100000 0000
Q ss_pred CCCCCCCCccEEEEeEEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----
Q 001446 172 SRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----- 245 (1075)
Q Consensus 172 ~~~~~~~~~~i~~~~v~~~~~~-~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~----- 245 (1075)
....++..+.|+|+||+++|++ .+++|+|+||+|++||+++|+|+||||||||+++|+|+++ .+|+|.+||.+
T Consensus 1208 ~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~ 1286 (1490)
T TIGR01271 1208 AQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVT 1286 (1490)
T ss_pred CCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCC
Confidence 0011233467999999999975 4689999999999999999999999999999999999997 79999999976
Q ss_pred -ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChhHH
Q 001446 246 -SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQ 321 (1075)
Q Consensus 246 -~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqk 321 (1075)
.++|++|+||||+|.+|+||||+||... ...++++++++|+.+++.+++.++|.+.++ +.|.+||||||
T Consensus 1287 ~~~lR~~is~IpQdp~LF~GTIR~NLdp~-------~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQr 1359 (1490)
T TIGR01271 1287 LQTWRKAFGVIPQKVFIFSGTFRKNLDPY-------EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHK 1359 (1490)
T ss_pred HHHHHhceEEEeCCCccCccCHHHHhCcc-------cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHH
Confidence 3578899999999999999999999542 134678999999999999999998876443 56789999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCCCcEEEecCCCCc
Q 001446 322 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGS 399 (1075)
Q Consensus 322 qRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~~~~~~~~~~ 399 (1075)
||++|||||+++|+|||||||||+||.+++..|.+.+++ .++|+|+||||++.+..+|+|++|++ |..++.+.+.+
T Consensus 1360 QrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~--G~ivE~g~p~~ 1437 (1490)
T TIGR01271 1360 QLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEG--SSVKQYDSIQK 1437 (1490)
T ss_pred HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEEC--CEEEEeCCHHH
Confidence 999999999999999999999999999999999999986 48999999999999999999999986 33455444433
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=414.28 Aligned_cols=348 Identities=15% Similarity=0.169 Sum_probs=239.6
Q ss_pred cHHHHHHHHHHHHHHHHHHhhHHHHHhcCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 13 MSKEQQLEGEYRQLHSRLRTHAESIAFYGGEN--KEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVIL 90 (1075)
Q Consensus 13 ~~~~~~~e~~~r~~l~~i~~~~e~I~~~~~e~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (1075)
..+.++.++++...+.....+.++|+.|+.++ .+.+++.+..++..+...+ ...................++..+
T Consensus 180 ~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 256 (555)
T TIGR01194 180 FHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII---EILIFIAAENFGQLLFFLLIGCAL 256 (555)
T ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555677677777778899999999854 3444444433333222211 111111111111100111111111
Q ss_pred HHhhhhccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCC
Q 001446 91 IIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRN 170 (1075)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 170 (1075)
++++.. +..+.|...++ ...+..++..+..+......+.+...+++|+.++++...+...........
T Consensus 257 ----~~~~~~--~~~t~g~l~a~------~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~ 324 (555)
T TIGR01194 257 ----FAAAMF--ASIDAAAISAF------VLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDAD 324 (555)
T ss_pred ----HHHHHh--cCCCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 122111 12234432222 122233445666777777888999999999998865321110000000000
Q ss_pred CC--CCCCCCCccEEEEeEEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCc
Q 001446 171 GS--RNYFSEANYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV 244 (1075)
Q Consensus 171 ~~--~~~~~~~~~i~~~~v~~~~~~~----~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~ 244 (1075)
.. .......+.++++||+|.|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 325 ~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~ 404 (555)
T TIGR01194 325 NVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGA 404 (555)
T ss_pred cccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 00 0000113469999999999752 36999999999999999999999999999999999999999999999996
Q ss_pred C------ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCCh
Q 001446 245 G------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSL 318 (1075)
Q Consensus 245 ~------~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSg 318 (1075)
+ .++++.++||+|+|++|++|+++|+. ...+++++.++++.++++++.+++|.+.++. .+|||
T Consensus 405 ~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~---------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~--~~LSg 473 (555)
T TIGR01194 405 AVSADSRDDYRDLFSAIFADFHLFDDLIGPDEG---------EHASLDNAQQYLQRLEIADKVKIEDGGFSTT--TALST 473 (555)
T ss_pred ECCCCCHHHHHhhCcEEccChhhhhhhhhcccc---------cchhHHHHHHHHHHcCCchhhcccccccCCc--ccCCH
Confidence 5 24567899999999999999999951 1235667889999999999999988765543 68999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 319 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 319 GqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~----~~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
|||||++||||++++|+++|||||||+||+++++.+.+.+. ..++|+|+||||++.+..||+|+++++
T Consensus 474 Gq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~ 545 (555)
T TIGR01194 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAA 545 (555)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999987542 358999999999999999999999986
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=364.36 Aligned_cols=198 Identities=29% Similarity=0.405 Sum_probs=172.2
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-ccc--cccEEEEc
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDL--NKEIFYVP 256 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-~~~--~~~i~~v~ 256 (1075)
..|+++|+++.|.++ ++|+|+||++++|++++|+||||+|||||+|+|+|+++|.+|+|.+.|.+ ... +.+|||||
T Consensus 3 ~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 3 PMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred cEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 368999999999755 79999999999999999999999999999999999999999999999864 112 35799999
Q ss_pred CCC---CCCcCCHHHHhcCCCCCCcc----cCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHH
Q 001446 257 QRP---YTAVGTLRDQLIYPLTSDQE----VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 329 (1075)
Q Consensus 257 Q~~---~~~~~tv~~ni~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAra 329 (1075)
|.. |-|+.||+|-+..+...... ....+.+++.++|+.+|+.++.++.. .+|||||+|||.||||
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i--------~~LSGGQ~QRV~lARA 153 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQI--------GELSGGQKQRVLLARA 153 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcc--------cccCcHHHHHHHHHHH
Confidence 965 56788999999887543221 12234578899999999999998865 6899999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 330 FYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 330 l~~~p~illLDEpts~LD~~~~~~i~~~l~---~~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|+++|++|+|||||+|+|+.++..+++.++ +.|+||++||||++.+ .++|+|+.+++
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~ 214 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR 214 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC
Confidence 999999999999999999999999888765 3599999999999987 57999999975
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=410.57 Aligned_cols=446 Identities=18% Similarity=0.271 Sum_probs=278.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHh
Q 001446 557 HLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKAL 636 (1075)
Q Consensus 557 ~~~~~~~~~~r~~l~~~ll~~~l~~~~~~~~~~~~~~~~~~~~r~s~D~~~~~~~l~~~~~~~i~~~~~~~~~~~~l~~~ 636 (1075)
+...+...++|..+...+.+.-++-...-+ .....+++.|-++.|++.+.+....+ ..+...++.++...+.|+..
T Consensus 264 ~~~~~~g~r~R~al~~~IY~K~L~ls~~~~---~~~t~G~ivNlms~D~~ri~~~~~~~-h~~w~~Plqi~~~l~lLy~~ 339 (1381)
T KOG0054|consen 264 FVSFRVGMRLRSALISAIYRKALRLSNSAR---GETTVGEIVNLMSVDAQRLSDAACFL-HLLWSAPLQIILALYLLYGL 339 (1381)
T ss_pred HHHHhhhhhHHHHHHHHHHHhhhcCchhhc---cCCCcchhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888877776665322111 23346788999999999998765432 22233333333333333333
Q ss_pred hch---hhHHHHHHHHHHHHHHHHHhccccccccHH-HHhhchhhhhHHHHHHHhhHHhhhcCCcHHHHHHHHHHHHHHH
Q 001446 637 TGQ---RGVAILYAYMLLGLGFLRSVTPEFGDLTSR-EQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELL 712 (1075)
Q Consensus 637 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~ 712 (1075)
.|+ .+++++++++++.....+... +...+ +...+...+. ..++.++++.|+.|+||+.-.+ ..++..
T Consensus 340 LG~sa~~G~~~~il~~p~n~~~a~~~~----~~q~~~m~~~D~Rik~-~nEiL~~IkviK~yaWE~~F~~----~I~~~R 410 (1381)
T KOG0054|consen 340 LGPSALAGVAVMVLLIPLNSFLAKKIA----KFQKRLMKRKDERIKL-MNEILNGIKVIKLYAWEKPFLK----KIEDLR 410 (1381)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhHHHHH-HHHHHhhhHhhhhHhhHHHHHH----HHHHHH
Confidence 322 223333333333333222211 11111 1112222222 2345567889999998664333 333333
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhchhhHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001446 713 EHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRK 792 (1075)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 792 (1075)
+......++..+......++....+..+.+..-..|.. ..+. ..+......++ +.+..+-.++..+-.....
T Consensus 411 ~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~-~~~~---~lt~~~aF~sl----alfniLr~pl~~~P~~i~~ 482 (1381)
T KOG0054|consen 411 QKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVL-LLGN---LLTASTAFTSL----ALFNILRFPLFMLPSVISQ 482 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCc---cccHhHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 22222222222211111111111111111111111111 0010 01111111111 1223334455566666677
Q ss_pred HHHHhhhhhhHHHHHHHHhhcCCCCCcccCCccCcCCCCCCCCceEEeeeeeeCCC--ccccccccceeecCCCeEEEEc
Q 001446 793 FVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS--QKLLARQLTFEIVPGKSLLVTG 870 (1075)
Q Consensus 793 ~~~~~~s~~Ri~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~g~I~f~~V~~~yp~--~~~vL~~vs~~I~~Ge~vaIvG 870 (1075)
..++..|++|+.+++..++..+.... . . +....+-.|+++|.+|+..+ .++.|+||||+|++|+.+||||
T Consensus 483 ~vqa~VS~~Ri~~fl~~~e~~~~~~~-~-----~--~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG 554 (1381)
T KOG0054|consen 483 LVQAKVSLKRLKEFLLSEELDPDSVE-R-----S--PDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVG 554 (1381)
T ss_pred HHHHHHHHHHHHHHhcCcccCccccc-c-----C--CCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEEC
Confidence 78889999999999864332211100 0 0 11112346999999997643 4569999999999999999999
Q ss_pred CCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCc
Q 001446 871 PNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGE 950 (1075)
Q Consensus 871 ~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~ 950 (1075)
++|||||||+++|+|-.+..+|++.++|. ++||||+|.+|+|||||||.++.+.+++.
T Consensus 555 ~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-----------iaYv~Q~pWI~ngTvreNILFG~~~d~~r----------- 612 (1381)
T KOG0054|consen 555 PVGSGKSSLLSAILGEMPKLSGSVAVNGS-----------VAYVPQQPWIQNGTVRENILFGSPYDEER----------- 612 (1381)
T ss_pred CCCCCHHHHHHHHhcCcccccceEEEcCe-----------EEEeccccHhhCCcHHHhhhcCccccHHH-----------
Confidence 99999999999999999999999999985 99999999999999999999876543322
Q ss_pred ccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHH
Q 001446 951 KLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEE 1029 (1075)
Q Consensus 951 ~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~ 1029 (1075)
-.++++.+.|..-++.+|.|=.|.+ ++|-+|||||||||++|||+.++++|.+||.|-||+|+.+-+
T Consensus 613 ------------Y~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~ 680 (1381)
T KOG0054|consen 613 ------------YDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGK 680 (1381)
T ss_pred ------------HHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhH
Confidence 2345556666666777788867765 789999999999999999999999999999999999999988
Q ss_pred HHHHH-HHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 1030 QLYRL-AKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1030 ~i~~~-~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
.|.+. ++. +++|+|.|||.++..+..|.++.|+||+
T Consensus 681 ~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~ 719 (1381)
T KOG0054|consen 681 HIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGK 719 (1381)
T ss_pred HHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCe
Confidence 77653 322 5899999999999999999999998876
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=385.74 Aligned_cols=207 Identities=20% Similarity=0.239 Sum_probs=184.2
Q ss_pred CceEEeeeeeeCCC-ccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcE
Q 001446 835 DSISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGI 911 (1075)
Q Consensus 835 g~I~f~~V~~~yp~-~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i 911 (1075)
|.|+|+||++.|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|.+||.++..+ ..+|++|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 57999999999974 5679999999999999999999999999999999999998 799999999999876 3457789
Q ss_pred EEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccc
Q 001446 912 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWE 990 (1075)
Q Consensus 912 ~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g 990 (1075)
+||||+|.+|++|+++|++ +... ..+++++++++.++|...+...|+++++.+ ++|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~-~~~~----------------------~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLD-PYGK----------------------WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred EEECCCcccchhhHHHHhh-hccC----------------------CCHHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 9999999999999999997 3211 124456777888899888888899999976 578
Q ss_pred cCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 991 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 991 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
.+||+|||||+|||||++++|+||||||||++||.++...+++.+++ .++|+|+|+||++++...|++++|.+|.
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~ 213 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENK 213 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCe
Confidence 99999999999999999999999999999999999999999888764 4899999999999988899999997664
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=365.33 Aligned_cols=198 Identities=28% Similarity=0.385 Sum_probs=173.9
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 254 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 254 (1075)
.++++|+++.|+ ++++++|+||++++||+++|+||||||||||||+|+|+++|.+|+|.++|++ +++.++++|
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 488999999996 7899999999999999999999999999999999999999999999999975 356789999
Q ss_pred EcCCCCCCc-CCHHHHhcCCCCCCcc----cCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHH
Q 001446 255 VPQRPYTAV-GTLRDQLIYPLTSDQE----VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 329 (1075)
Q Consensus 255 v~Q~~~~~~-~tv~~ni~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAra 329 (1075)
|||.+..+. .||+|-+.+|...... ....+.+.+.++|+.+++.++.++.. .+||||||||+.||||
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~--------~~LSGGerQrv~iArA 152 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV--------DELSGGERQRVLIARA 152 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc--------cccChhHHHHHHHHHH
Confidence 999986654 5999999988654211 12233446788999999999999865 6899999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcCC
Q 001446 330 FYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 387 (1075)
Q Consensus 330 l~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~~ 387 (1075)
|+++|++++||||||+||.....++++.+++ .|+|+|+|+||++.. ++||+++.|+++
T Consensus 153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G 215 (258)
T COG1120 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDG 215 (258)
T ss_pred HhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999888754 489999999999986 689999999863
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=404.43 Aligned_cols=239 Identities=20% Similarity=0.230 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCCCCCccEEEEeEEEEcCCCCeeeeeceEEEe
Q 001446 127 FQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVE 206 (1075)
Q Consensus 127 ~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~l~~i~l~i~ 206 (1075)
...+..+......+.....+.+|+.++.+.+++... .. ....+..+.++++||+|.|++++++|+|+||+++
T Consensus 276 ~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~--~~------~~~~~~~~~i~~~~v~f~y~~~~~~l~~i~~~i~ 347 (547)
T PRK10522 276 RTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF--PR------PQAFPDWQTLELRNVTFAYQDNGFSVGPINLTIK 347 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--cc------ccccCcCceEEEEEEEEEeCCCCeEEecceEEEc
Confidence 345666777777888889999999887543221110 00 0001112469999999999866689999999999
Q ss_pred CCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEEEcCCCCCCcCCHHHHhcCCCCCCccc
Q 001446 207 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV 280 (1075)
Q Consensus 207 ~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~ 280 (1075)
+||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..++++++||||+|++|++|+++| +
T Consensus 348 ~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~------- 417 (547)
T PRK10522 348 RGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G------- 417 (547)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-------
Confidence 999999999999999999999999999999999999975 246788999999999999999998 1
Q ss_pred CcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 001446 281 EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 360 (1075)
Q Consensus 281 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~ 360 (1075)
...+++++.++++.+++.+..+. +.+. ..|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.+
T Consensus 418 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~--~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~ 494 (547)
T PRK10522 418 KPANPALVEKWLERLKMAHKLEL-EDGR--ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLP 494 (547)
T ss_pred CchHHHHHHHHHHHcCCchhhhc-cccC--CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 12345677889999998876543 2111 13679999999999999999999999999999999999999998887642
Q ss_pred ----cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 361 ----MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 361 ----~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
.++|+|+|||+++.++.+|+|+++++
T Consensus 495 ~~~~~~~tvi~itH~~~~~~~~d~i~~l~~ 524 (547)
T PRK10522 495 LLQEMGKTIFAISHDDHYFIHADRLLEMRN 524 (547)
T ss_pred HHHhCCCEEEEEEechHHHHhCCEEEEEEC
Confidence 48999999999999999999999986
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-43 Score=343.60 Aligned_cols=197 Identities=23% Similarity=0.290 Sum_probs=166.0
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCc---cccCCcCcEE
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHID---EEAGSGCGIF 912 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~---~~~~~r~~i~ 912 (1075)
-|+++||+.+|. ...||+|||++|++||.|+|+||||||||||+++|.+|-+|++|+|.+||.++. ++..+|++++
T Consensus 2 mi~i~~l~K~fg-~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEeC-CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 389999999995 457999999999999999999999999999999999999999999999998775 3466788999
Q ss_pred EEcCCCCCCC-cchhhhhcCCC------ChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcc
Q 001446 913 YVPQRPYTCL-GTLRDQIIYPL------SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 985 (1075)
Q Consensus 913 ~VpQdP~Lf~-gTir~NL~~p~------~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 985 (1075)
+|+|..-||+ -|+-+|+.++. +.+++ .+...+.|+.|||.+....
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA---------------------~~~A~~lL~~VGL~~ka~~------- 132 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEA---------------------REKALELLEKVGLADKADA------- 132 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHH---------------------HHHHHHHHHHcCchhhhhh-------
Confidence 9999999997 59999998632 12221 2233467888988665433
Q ss_pred ccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHH---HhcCceEEEecCCCC-chhhccceEEE
Q 001446 986 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLA---KDMGITFVTSSQRPA-LIPFHSLELRL 1061 (1075)
Q Consensus 986 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~---~~~~~TvI~IaHRls-~i~~~~~~l~l 1061 (1075)
+..+||||||||+||||||.-+|+|+++||||||||+|.-..+.+.+ ++.|.|+|+|+|-+. ..+..|+++.+
T Consensus 133 ---yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFm 209 (240)
T COG1126 133 ---YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFM 209 (240)
T ss_pred ---CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEe
Confidence 35679999999999999999999999999999999999876665554 346999999999998 45689999999
Q ss_pred EcC
Q 001446 1062 IDG 1064 (1075)
Q Consensus 1062 ~~g 1064 (1075)
++|
T Consensus 210 d~G 212 (240)
T COG1126 210 DQG 212 (240)
T ss_pred eCC
Confidence 766
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=346.70 Aligned_cols=198 Identities=23% Similarity=0.350 Sum_probs=173.9
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC---------cccccc
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLNKE 251 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~---------~~~~~~ 251 (1075)
.|+++||++.||+++++|+||||+|++||+++|+||||||||||||+|.|+++|++|+|.++|.+ ..++++
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999954 245789
Q ss_pred EEEEcCCCCCCc-CCHHHHhcCCCCCCc--------ccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHH
Q 001446 252 IFYVPQRPYTAV-GTLRDQLIYPLTSDQ--------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 322 (1075)
Q Consensus 252 i~~v~Q~~~~~~-~tv~~ni~~~~~~~~--------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkq 322 (1075)
|||++|.+.+.+ .||.+|++.+..... .....+...+.++|+++|+.+..-... .+|||||||
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--------~~LSGGQQQ 154 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--------STLSGGQQQ 154 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh--------ccCCcchhH
Confidence 999999998765 599999987653321 112334456778999999988766543 689999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 323 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 323 Rl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
||+|||||+.+|+++|.|||+++|||.+.+.+++.+++ .|.|+|+.-|+++++ ++||||+-|++
T Consensus 155 RVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~ 223 (258)
T COG3638 155 RVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKA 223 (258)
T ss_pred HHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecC
Confidence 99999999999999999999999999999999998864 589999999999997 58999999986
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-43 Score=362.21 Aligned_cols=203 Identities=23% Similarity=0.284 Sum_probs=171.3
Q ss_pred eEEeeeeeeCCC----ccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc-----cCC
Q 001446 837 ISFSKLDIITPS----QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-----AGS 907 (1075)
Q Consensus 837 I~f~~V~~~yp~----~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~-----~~~ 907 (1075)
|+|++|+..|+. ..++|+||||+|++||..||+|+||+|||||++++-+|-.|++|+|.+||.|+..+ ..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 789999998876 25699999999999999999999999999999999999999999999999999887 245
Q ss_pred cCcEEEEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccc
Q 001446 908 GCGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 986 (1075)
Q Consensus 908 r~~i~~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~ 986 (1075)
|++|++|+|++-|++ -|+.+|+.||..- ++.. .......+.+.|+-|||.+...+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLei----------ag~~------k~ei~~RV~elLelVgL~dk~~~-------- 137 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLEL----------AGVP------KAEIKQRVAELLELVGLSDKADR-------- 137 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhh----------cCCC------HHHHHHHHHHHHHHcCChhhhcc--------
Confidence 788999999999998 7999999998631 0100 00113456677888888544332
Q ss_pred cccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHH----hcCceEEEecCCCCch-hhccceEEE
Q 001446 987 LNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPALI-PFHSLELRL 1061 (1075)
Q Consensus 987 ~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~----~~~~TvI~IaHRls~i-~~~~~~l~l 1061 (1075)
..++||||||||++|||||..+|+||+.||||||||++|-+.|.++++ +.|.|+++|+|-++.+ +++|++.+|
T Consensus 138 --yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm 215 (339)
T COG1135 138 --YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVL 215 (339)
T ss_pred --CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEe
Confidence 357899999999999999999999999999999999999887776664 3699999999999955 599999999
Q ss_pred EcCC
Q 001446 1062 IDGE 1065 (1075)
Q Consensus 1062 ~~g~ 1065 (1075)
++|.
T Consensus 216 ~~G~ 219 (339)
T COG1135 216 DQGR 219 (339)
T ss_pred eCCE
Confidence 8775
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=374.69 Aligned_cols=197 Identities=26% Similarity=0.382 Sum_probs=176.0
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC----ccccccEEEEc
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 256 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~----~~~~~~i~~v~ 256 (1075)
.|+++||++.|.+.. +++++||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|.+ ....++|++||
T Consensus 3 ~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred EEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 589999999996433 9999999999999999999999999999999999999999999999975 22357899999
Q ss_pred CCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCC
Q 001446 257 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 335 (1075)
Q Consensus 257 Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~ 335 (1075)
|+.-+++ .||+|||.||+......+...+.++.++++.++|++++++.| .+|||||||||||||||+++|+
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P--------~~LSGGQrQRVAlaRAlVr~P~ 153 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP--------LQLSGGQRQRVALARALVRKPK 153 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc--------ccCChhhHHHHHHHHHHhcCCC
Confidence 9997765 699999999988765555566788999999999999999999 6999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHH----hcCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 336 FAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 336 illLDEpts~LD~~~~~~i~~~l~----~~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
++|||||+|+||.+.+..+...++ +.+.|+|+||||...+ ..+|+|.+|++
T Consensus 154 v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~ 209 (338)
T COG3839 154 VFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMND 209 (338)
T ss_pred EEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeC
Confidence 999999999999998887766654 3589999999998765 57999999984
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-43 Score=340.99 Aligned_cols=201 Identities=22% Similarity=0.251 Sum_probs=170.5
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCc-----cEEEeCCcC--------c
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS-----GHIAKPGVG--------S 246 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~-----G~i~~~~~~--------~ 246 (1075)
..++++|++++|. ++.+|+|||++|++++++|++||||||||||||++.++.+... |+|.++|++ .
T Consensus 6 ~~~~~~~l~~yYg-~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 6 PAIEVRDLNLYYG-DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred ceeEecceeEEEC-chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 4689999999995 6789999999999999999999999999999999999988775 999999975 2
Q ss_pred cccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHh-cCCCCcccCCCCCCChhHHHHHH
Q 001446 247 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD-RYPPEKEINWGDELSLGEQQRLG 325 (1075)
Q Consensus 247 ~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~~g~~LSgGqkqRl~ 325 (1075)
.+|++||+|||.|.-|+.||+||+.||....+.....-++.+++.|+.+.|++..+ ++. ..+..||||||||++
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~-----~sa~~LSGGQQQRLc 159 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLH-----KSALGLSGGQQQRLC 159 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhh-----CCccCCChhHHHHHH
Confidence 47899999999999999999999999976554433344566788899999876543 321 123679999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 326 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 326 lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|||||.-+|++||||||||||||.+..+|-+.+.+ .+.|||+|||++.... ..|+...+-.
T Consensus 160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~ 223 (253)
T COG1117 160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYL 223 (253)
T ss_pred HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcc
Confidence 99999999999999999999999999888777654 4789999999998764 5788877764
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=343.18 Aligned_cols=204 Identities=23% Similarity=0.274 Sum_probs=167.3
Q ss_pred CceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCC-----CeEecCCCCCccc----c
Q 001446 835 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVS-----GSLTKPSQHIDEE----A 905 (1075)
Q Consensus 835 g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~s-----G~I~idg~di~~~----~ 905 (1075)
..++++|++++|. ...+|+|||+.|++++.+|++|||||||||+++.|-|+.|... |+|.+||.||.+. .
T Consensus 6 ~~~~~~~l~~yYg-~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 6 PAIEVRDLNLYYG-DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred ceeEecceeEEEC-chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 4689999999996 5679999999999999999999999999999999999999876 9999999999864 3
Q ss_pred CCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcc
Q 001446 906 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 985 (1075)
Q Consensus 906 ~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 985 (1075)
.+|.++++|.|.|--|+.||+||+.|+.. .++..+ ...|+.+...|+++.||+.+.. .|+.
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r----------~~g~~~------~~ldeiVe~sLk~AaLWdEVKD---rL~~ 145 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLR----------LHGIKD------KELDEIVESSLKKAALWDEVKD---RLHK 145 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHH----------hhccch------HHHHHHHHHHHHHhHhHHHhHH---HhhC
Confidence 57889999999999999999999999642 111111 1246667788899999987742 2332
Q ss_pred ccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCC-chhhccceEEE
Q 001446 986 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPA-LIPFHSLELRL 1061 (1075)
Q Consensus 986 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls-~i~~~~~~l~l 1061 (1075)
. +..|||||||||||||||.-+|+||+|||||||||+-+-..|.+++.+ .+-|+|+|+|.+. ..+..|+.-.+
T Consensus 146 s---a~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf 221 (253)
T COG1117 146 S---ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFF 221 (253)
T ss_pred C---ccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhh
Confidence 2 345999999999999999999999999999999999887777776654 5889999999984 44544444443
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=345.63 Aligned_cols=197 Identities=34% Similarity=0.467 Sum_probs=171.2
Q ss_pred cEEEEeEEEEcCCCC---eeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-------ccccc
Q 001446 181 YIEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNK 250 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~---~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-------~~~~~ 250 (1075)
.++++|+++.|+.++ ++|++|||++.+||+++|+|+||||||||.++|+|+.+|++|+|.++|.. ...++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 589999999997654 59999999999999999999999999999999999999999999999954 13467
Q ss_pred cEEEEcCCCCC---CcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCCh-hHHhcCCCCcccCCCCCCChhHHHHHHH
Q 001446 251 EIFYVPQRPYT---AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGM 326 (1075)
Q Consensus 251 ~i~~v~Q~~~~---~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqkqRl~l 326 (1075)
.|-+|||+|+- +..||++-|.-|...... .....++.++++.+||. .+++++| .+|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~--~~~~~~i~~~L~~VgL~~~~l~R~P--------~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGL--SKSQQRIAELLDQVGLPPSFLDRRP--------HELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCc--cHHHHHHHHHHHHcCCCHHHHhcCc--------hhcChhHHHHHHH
Confidence 89999999973 456999988877654221 12344588999999996 4788888 6899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcCC
Q 001446 327 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 387 (1075)
Q Consensus 327 Aral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~~ 387 (1075)
||||..+|++||||||||+||......+++.+.+ .+.|+|+||||+..+. .||||++|+++
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G 218 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNG 218 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCC
Confidence 9999999999999999999999999999887743 5889999999999986 59999999973
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=376.21 Aligned_cols=199 Identities=25% Similarity=0.382 Sum_probs=176.0
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC----ccccccEEEE
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYV 255 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~----~~~~~~i~~v 255 (1075)
..++++||++.|. +..+++|+||+|++||+++++||||||||||||+|+|+..|++|+|.++|++ ...++.|++|
T Consensus 4 ~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 4 PALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred ceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence 4689999999996 6789999999999999999999999999999999999999999999999975 2336789999
Q ss_pred cCCCCCCc-CCHHHHhcCCCCCCcccC-cCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCC
Q 001446 256 PQRPYTAV-GTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 333 (1075)
Q Consensus 256 ~Q~~~~~~-~tv~~ni~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~ 333 (1075)
||+.-+|+ .||+|||.||+....... ....+++.++++.++|.++.++.| .+|||||||||||||||..+
T Consensus 83 FQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p--------~qLSGGQqQRVALARAL~~~ 154 (352)
T COG3842 83 FQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP--------HQLSGGQQQRVALARALVPE 154 (352)
T ss_pred ecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh--------hhhChHHHHHHHHHHHhhcC
Confidence 99998876 699999999988332211 224468899999999999999998 79999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHH----hcCCeEEEEecChhh-HhhCCeEEEEcCC
Q 001446 334 PKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPAL-VAFHDVVLSLDGE 387 (1075)
Q Consensus 334 p~illLDEpts~LD~~~~~~i~~~l~----~~~~t~i~vtH~~~~-~~~~d~i~~l~~~ 387 (1075)
|++||||||+|+||.+.+.++...++ +.|+|.|+||||.+. +..+|+|.+|+++
T Consensus 155 P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G 213 (352)
T COG3842 155 PKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDG 213 (352)
T ss_pred cchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCC
Confidence 99999999999999999988877664 459999999999876 4789999999863
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=341.48 Aligned_cols=198 Identities=28% Similarity=0.368 Sum_probs=171.1
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC---------ccccc
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLNK 250 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~---------~~~~~ 250 (1075)
..|++++|++.+ +++.+++|+||+|++||+++|+||||||||||+|+|.|+++|++|+|.++|.+ ..+++
T Consensus 7 ~~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 7 PLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred ceEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 469999999998 46789999999999999999999999999999999999999999999999975 24578
Q ss_pred cEEEEcCCCCCCcC-CHHHHhcCCCCCCccc-CcCCHHHHHHHHHHcCChhH-HhcCCCCcccCCCCCCChhHHHHHHHH
Q 001446 251 EIFYVPQRPYTAVG-TLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGMA 327 (1075)
Q Consensus 251 ~i~~v~Q~~~~~~~-tv~~ni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~g~~LSgGqkqRl~lA 327 (1075)
++|++||.--+|.. ||+||+.||....... +..-++.+..-|+.+||... .+.+| .+||||+++|+|||
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P--------sELSGGM~KRvaLA 157 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP--------SELSGGMRKRVALA 157 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc--------hhhcchHHHHHHHH
Confidence 99999999999986 9999999987543221 11223334556888999887 88888 79999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 328 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 328 ral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
||++.+|+++++||||+||||.+...+-+++++ .|.|+|+||||++.+. .||+++++.+
T Consensus 158 RAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~ 221 (263)
T COG1127 158 RAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLAD 221 (263)
T ss_pred HHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeC
Confidence 999999999999999999999988876665543 4999999999998774 6899999976
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=356.63 Aligned_cols=199 Identities=30% Similarity=0.439 Sum_probs=178.9
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-------ccccccEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-------~~~~~~i~ 253 (1075)
.++++|+++.|+++.++|+++||+|++||.++|+|+||||||||+++++|+++|++|.|.++|.+ ..+++++|
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 58899999999876789999999999999999999999999999999999999999999999964 24678999
Q ss_pred EEcCCC--CCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 254 YVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 254 ~v~Q~~--~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
||+|+| .++..||.+.+.|+...........++++.++++.+++.++.++.| .+||||||||||||.+|+
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p--------~~LSGGqkqRvaIA~vLa 154 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP--------FNLSGGQKQRVAIAGVLA 154 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc--------cccCCcceeeHHhhHHHH
Confidence 999999 4677899999999977655443345677889999999999999888 699999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CCeEEEEecChhhHh-hCCeEEEEcCC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDGE 387 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~-~~t~i~vtH~~~~~~-~~d~i~~l~~~ 387 (1075)
.+|+++|||||||+||+...+.+++.+++ . |+|+|++|||++.+. +||++++|+++
T Consensus 155 ~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G 215 (235)
T COG1122 155 MGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDG 215 (235)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999888764 3 689999999999886 59999999863
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=351.08 Aligned_cols=198 Identities=28% Similarity=0.409 Sum_probs=173.7
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCc---Cc----cccccEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV---GS----DLNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~---~~----~~~~~i~ 253 (1075)
+|+++|+++.++ ..++++|+|++|+.||.+++.||||||||||||+|+|+..|++|.|.++|. |. ...++||
T Consensus 2 ~i~i~~~~~~~~-~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 2 SIRINNVKKRFG-AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ceeehhhhhhcc-cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 467888888775 567899999999999999999999999999999999999999999999997 41 2246899
Q ss_pred EEcCCCCCCc-CCHHHHhcCCCCCCccc--CcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHH
Q 001446 254 YVPQRPYTAV-GTLRDQLIYPLTSDQEV--EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 330 (1075)
Q Consensus 254 ~v~Q~~~~~~-~tv~~ni~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral 330 (1075)
||+|+.-+|. .||.+||.||....... +...+.++.+.|+.+.|+.+.+++| .+|||||||||||||||
T Consensus 81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP--------~QLSGGQrQRVALARAL 152 (345)
T COG1118 81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP--------AQLSGGQRQRVALARAL 152 (345)
T ss_pred EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc--------hhcChHHHHHHHHHHHh
Confidence 9999988765 69999999998644221 2345677889999999999999999 69999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcCC
Q 001446 331 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 387 (1075)
Q Consensus 331 ~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~~ 387 (1075)
...|++||||||+++||.+.+..+.++|++ .|.|+++||||.+.+ +.+|+|++|+++
T Consensus 153 A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G 214 (345)
T COG1118 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQG 214 (345)
T ss_pred hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCC
Confidence 999999999999999999999988887764 499999999999876 689999999874
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=327.69 Aligned_cols=202 Identities=24% Similarity=0.320 Sum_probs=173.3
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc-----cCCcCcE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-----AGSGCGI 911 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~-----~~~r~~i 911 (1075)
|+|+||+..||+++++|+||||+|++||.+-++|||||||||++++|++.-.|++|+|.++|.|++.+ +.+|++|
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 78999999999998899999999999999999999999999999999999999999999999999876 4579999
Q ss_pred EEEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccc
Q 001446 912 FYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 990 (1075)
Q Consensus 912 ~~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 990 (1075)
++|.||--|.. -|+.||+.||..-- + ..+......+.++|+.|||.+-...+|
T Consensus 82 GvVFQD~rLL~~~tvyeNVA~pL~v~----------G------~~~~~i~~rV~~~L~~VgL~~k~~~lP---------- 135 (223)
T COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVI----------G------KPPREIRRRVSEVLDLVGLKHKARALP---------- 135 (223)
T ss_pred eeEeeeccccccchHhhhhhhhhhcc----------C------CCHHHHHHHHHHHHHHhccchhhhcCc----------
Confidence 99999998764 69999999986310 0 001112455678899999977666554
Q ss_pred cCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCchh-hccceEEEEcC
Q 001446 991 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIP-FHSLELRLIDG 1064 (1075)
Q Consensus 991 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i~-~~~~~l~l~~g 1064 (1075)
.+||||||||+|||||++.+|++||-||||.+||+++-..|.+++.+ .|.||++.+|.+++++ +..+++.+++|
T Consensus 136 ~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~G 213 (223)
T COG2884 136 SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDG 213 (223)
T ss_pred cccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCC
Confidence 56999999999999999999999999999999999998888777654 6999999999998775 55678888766
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=376.93 Aligned_cols=210 Identities=20% Similarity=0.220 Sum_probs=171.2
Q ss_pred cCCCCCCCCceEEeeeeeeCCC-ccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCC-----CCCCeEecCCCC
Q 001446 827 KWNSTDYQDSISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP-----VVSGSLTKPSQH 900 (1075)
Q Consensus 827 ~w~~~~~~g~I~f~~V~~~yp~-~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~-----~~sG~I~idg~d 900 (1075)
.||. .+.|+|+||++.|++ .+++|+|+||+|++||++|||||||||||||+++|+|+++ |.+|+|.+||+|
T Consensus 74 ~~~~---~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~ 150 (329)
T PRK14257 74 DFNH---ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTN 150 (329)
T ss_pred CCCc---CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE
Confidence 5776 578999999999974 4679999999999999999999999999999999999997 469999999999
Q ss_pred Cccc----cCCcCcEEEEcCCCCCCCcchhhhhcCCCC---h-HHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCc
Q 001446 901 IDEE----AGSGCGIFYVPQRPYTCLGTLRDQIIYPLS---R-EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 972 (1075)
Q Consensus 901 i~~~----~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~---~-~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L 972 (1075)
++.. ..+|.+++||||+|.+|++|+++||+|+.. . +++.+ ++.+.++++.++|
T Consensus 151 i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~-------------------~~~~~~~l~~~~L 211 (329)
T PRK14257 151 TRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKIL-------------------EKIVEKSLKSAAL 211 (329)
T ss_pred ccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHH-------------------HHHHHHHHHHcCC
Confidence 9732 245778999999999999999999986311 1 11111 1223445566665
Q ss_pred hhhhhhhccCCcccc-ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCC
Q 001446 973 SYLLEREEVGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRP 1049 (1075)
Q Consensus 973 ~~~i~~~~~Gldt~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRl 1049 (1075)
++ ++++.. ..+.+||||||||+|||||++++|+|||||||||+||.++...+++.++. .++|+|+|||++
T Consensus 212 ~~-------~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l 284 (329)
T PRK14257 212 WD-------EVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSM 284 (329)
T ss_pred cc-------hhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 32 222222 45678999999999999999999999999999999999999888887754 479999999999
Q ss_pred Cchh-hccceEEEEcCC
Q 001446 1050 ALIP-FHSLELRLIDGE 1065 (1075)
Q Consensus 1050 s~i~-~~~~~l~l~~g~ 1065 (1075)
.++. ++|++++|.+|.
T Consensus 285 ~~i~~~~Driivl~~G~ 301 (329)
T PRK14257 285 AQAQRISDETVFFYQGW 301 (329)
T ss_pred HHHHHhCCEEEEEECCE
Confidence 9764 699999997664
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=360.53 Aligned_cols=190 Identities=21% Similarity=0.237 Sum_probs=150.8
Q ss_pred CceEEeeeeeeCCCcc-ccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEE
Q 001446 835 DSISFSKLDIITPSQK-LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913 (1075)
Q Consensus 835 g~I~f~~V~~~yp~~~-~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~ 913 (1075)
..+.|.+|+|.|+.++ +.++++++.++.-+++++||++|+||||+++++.+=..|..|.+.+.+ |.+|++
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~---------r~ri~~ 431 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP---------RLRIKY 431 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc---------cceecc
Confidence 4689999999776544 899999999999999999999999999999999998888999887655 467998
Q ss_pred EcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCC
Q 001446 914 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 993 (1075)
Q Consensus 914 VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~L 993 (1075)
-.|.-+=| +.-|. ...+... ...|...++++...+..+||..-+... .-..|
T Consensus 432 f~Qhhvd~---l~~~v--------~~vd~~~--------~~~pG~~~ee~r~hl~~~Gl~g~la~~---------si~~L 483 (582)
T KOG0062|consen 432 FAQHHVDF---LDKNV--------NAVDFME--------KSFPGKTEEEIRRHLGSFGLSGELALQ---------SIASL 483 (582)
T ss_pred hhHhhhhH---HHHHh--------HHHHHHH--------HhCCCCCHHHHHHHHHhcCCCchhhhc---------ccccc
Confidence 88865432 11111 1111111 123455788889888888774322211 12469
Q ss_pred ChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHhcCceEEEecCCCCchhhccceEEE
Q 001446 994 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRL 1061 (1075)
Q Consensus 994 SgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~~~~TvI~IaHRls~i~~~~~~l~l 1061 (1075)
|||||-|++||-....+|.+|||||||..||.++-.++-+.++..+--||+|+|..+.++-...++..
T Consensus 484 SGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wv 551 (582)
T KOG0062|consen 484 SGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWV 551 (582)
T ss_pred CCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEE
Confidence 99999999999999999999999999999999999999998887778999999999999887777777
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=316.62 Aligned_cols=195 Identities=25% Similarity=0.348 Sum_probs=170.6
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC----ccccccEEEEcC
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 257 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~----~~~~~~i~~v~Q 257 (1075)
+.+++|.+.|.. .=-.++++|++||+++|+|||||||||||++|+|+..|.+|+|.++|++ ....+-++++||
T Consensus 2 l~L~~V~~~y~~---~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQ 78 (231)
T COG3840 2 LALDDVRFSYGH---LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78 (231)
T ss_pred ccccceEEeeCc---ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhh
Confidence 567889988853 2235789999999999999999999999999999999999999999986 234567999999
Q ss_pred CCCCCcC-CHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCE
Q 001446 258 RPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 336 (1075)
Q Consensus 258 ~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~i 336 (1075)
+..+|.- ||.+|+.+|....-.......+++..++.++||..+.+++| .+||||||||+||||+|+++.+|
T Consensus 79 EnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP--------~~LSGGqRQRvALARclvR~~Pi 150 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP--------GELSGGQRQRVALARCLVREQPI 150 (231)
T ss_pred ccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc--------cccCchHHHHHHHHHHHhccCCe
Confidence 9999975 99999999876554444556778899999999999999999 69999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHH----HhcCCeEEEEecChhhHh-hCCeEEEEcCC
Q 001446 337 AILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALVA-FHDVVLSLDGE 387 (1075)
Q Consensus 337 llLDEpts~LD~~~~~~i~~~l----~~~~~t~i~vtH~~~~~~-~~d~i~~l~~~ 387 (1075)
++||||+|+|||..+.++...+ .+.+.|+++|||+++.+. .+|++++++++
T Consensus 151 lLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~G 206 (231)
T COG3840 151 LLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNG 206 (231)
T ss_pred EEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCC
Confidence 9999999999999998877654 456899999999998875 69999999863
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=342.46 Aligned_cols=204 Identities=25% Similarity=0.311 Sum_probs=165.6
Q ss_pred eEEeeeeeeCCCc---cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc------CC
Q 001446 837 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA------GS 907 (1075)
Q Consensus 837 I~f~~V~~~yp~~---~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~------~~ 907 (1075)
++++||+..|..+ ..+|+++||+|++||.|+|+||||||||||+++|.++-.|++|.|.++|.|+..++ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 5789999977643 47999999999999999999999999999999999999999999999999998762 24
Q ss_pred cCcEEEEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccc
Q 001446 908 GCGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 986 (1075)
Q Consensus 908 r~~i~~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~ 986 (1075)
|.+|+||+|+..|.+ -|++||+..|.... +.. .......+.+.++.+||.+....
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~----------~~~------~~~~~~~~~~l~~~lgl~~~~~~-------- 137 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIA----------GKS------AGRRKRAAEELLEVLGLEDRLLK-------- 137 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHc----------CCC------hhHHHHHHHHHHHhcCChhhhcc--------
Confidence 567999999999876 59999998653100 000 00012334456677777543320
Q ss_pred cccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHH----hcCceEEEecCCCCchhhccceEEEE
Q 001446 987 LNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPALIPFHSLELRLI 1062 (1075)
Q Consensus 987 ~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~----~~~~TvI~IaHRls~i~~~~~~l~l~ 1062 (1075)
....+||||||||+||||||+.+|+|++.||||++||.++.+.+.++++ +.|+|+|+|+|......+.|+++.+.
T Consensus 138 -~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~ 216 (226)
T COG1136 138 -KKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELK 216 (226)
T ss_pred -CCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEe
Confidence 1135799999999999999999999999999999999999988777654 35899999999999999999999998
Q ss_pred cCC
Q 001446 1063 DGE 1065 (1075)
Q Consensus 1063 ~g~ 1065 (1075)
||.
T Consensus 217 dG~ 219 (226)
T COG1136 217 DGK 219 (226)
T ss_pred CCe
Confidence 886
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=370.07 Aligned_cols=198 Identities=26% Similarity=0.340 Sum_probs=171.4
Q ss_pred cEEEEeEEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc---------cc
Q 001446 181 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DL 248 (1075)
Q Consensus 181 ~i~~~~v~~~~~~---~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~ 248 (1075)
+|+++|+++.|++ ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. ..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 3789999999963 24799999999999999999999999999999999999999999999999641 13
Q ss_pred cccEEEEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHH
Q 001446 249 NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 327 (1075)
Q Consensus 249 ~~~i~~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lA 327 (1075)
+++|+|+||++.++. .|++||+.++............+++.++++.++|.+..+++| .+|||||||||+||
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~--------~~LSgGqkQRV~IA 152 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP--------SNLSGGQKQRVAIA 152 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh--------hhCCHHHHHHHHHH
Confidence 568999999998875 699999998753221111123456788999999999888887 68999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 328 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 328 ral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|||+.+|++||||||||+||+.+...+++.+++ .|.|+|+|||+++.+. .||++++|++
T Consensus 153 RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~ 216 (343)
T TIGR02314 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISN 216 (343)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999887764 3899999999999984 6999999986
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=349.39 Aligned_cols=197 Identities=26% Similarity=0.370 Sum_probs=168.7
Q ss_pred EEEEeEEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc---------ccccc
Q 001446 182 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNKE 251 (1075)
Q Consensus 182 i~~~~v~~~~~~~-~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~~~ 251 (1075)
++++|+++.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 7899999999654 4799999999999999999999999999999999999999999999998641 13467
Q ss_pred EEEEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHH
Q 001446 252 IFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 330 (1075)
Q Consensus 252 i~~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral 330 (1075)
++|+||+|.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~laral 153 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP--------MQLSGGEQQRVAIARAI 153 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHHHHH
Confidence 999999998776 599999987532211111112456788999999998888776 68999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 331 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 331 ~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
+.+|+++||||||++||+.+++.+.+.+++ .|+|+|+||||++.+. .||++++|++
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~ 213 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSR 213 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999888764 3889999999999885 6999999975
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=368.26 Aligned_cols=198 Identities=25% Similarity=0.390 Sum_probs=171.8
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC----ccccccEEEEc
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 256 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~----~~~~~~i~~v~ 256 (1075)
.++++|+++.|++++++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ...+++|+|||
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 48999999999545789999999999999999999999999999999999999999999999964 12246899999
Q ss_pred CCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCC
Q 001446 257 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 335 (1075)
Q Consensus 257 Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~ 335 (1075)
|++.+|+ .||+||+.|+............+++.++++.++|+++.++.| .+|||||||||+|||||+.+|+
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LSgGq~QRvalARAL~~~P~ 154 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP--------RELSGGQRQRVAMGRAIVREPA 154 (356)
T ss_pred CCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999886 599999999764321111122356788999999999999988 6899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 336 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 336 illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
+||||||||+||+.++..+.+.+++ .|+|+|+||||.+.+ ..||+|++|++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~ 210 (356)
T PRK11650 155 VFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNG 210 (356)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999988887653 389999999999876 57999999985
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=306.56 Aligned_cols=198 Identities=29% Similarity=0.381 Sum_probs=173.4
Q ss_pred cEEEEeEEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----c----c-
Q 001446 181 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----S----D- 247 (1075)
Q Consensus 181 ~i~~~~v~~~~~~---~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~----~- 247 (1075)
.|+++++++.-++ ...+|++++|.|++||.++|+||||||||||+-+++|+-.|++|+|.+.|++ . .
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 5788888876543 3479999999999999999999999999999999999999999999999864 1 1
Q ss_pred ccccEEEEcCCCC-CCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHH
Q 001446 248 LNKEIFYVPQRPY-TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 326 (1075)
Q Consensus 248 ~~~~i~~v~Q~~~-~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~l 326 (1075)
..+++|||||... +++.|-.||+..|.....+..........+.|+.+||.+.+..+| .+|||||||||||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP--------~qLSGGEQQRVAi 157 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP--------AQLSGGEQQRVAL 157 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc--------cccCchHHHHHHH
Confidence 2468999999986 467899999999987655433334556788999999999999999 7999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 327 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 327 Aral~~~p~illLDEpts~LD~~~~~~i~~~l~----~~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
|||+...|++|+.||||-+||.++.+++.+.+. +.|.|.|+||||+.+...|+|++.|..
T Consensus 158 ARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~ 221 (228)
T COG4181 158 ARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRS 221 (228)
T ss_pred HHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeec
Confidence 999999999999999999999999999888763 469999999999999999999999975
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=336.96 Aligned_cols=205 Identities=21% Similarity=0.315 Sum_probs=168.1
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEc
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~Vp 915 (1075)
.|+++|++++|.+. +||+||||+|++|+.++|+||+|||||||+++++|+..|.+|+|.+.|.+++.... +.+|+|||
T Consensus 4 ~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~-~~~IgYVP 81 (254)
T COG1121 4 MIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK-RLRIGYVP 81 (254)
T ss_pred EEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc-CCeEEEcC
Confidence 58999999999866 69999999999999999999999999999999999999999999999998776532 45799999
Q ss_pred CCC---CCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccC
Q 001446 916 QRP---YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 992 (1075)
Q Consensus 916 QdP---~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 992 (1075)
|.. .-|+-|++|-+..+.... ............+.+.++|+.||++++..+. -..
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~------------~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~----------i~~ 139 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGK------------KGWFRRLNKKDKEKVDEALERVGMEDLRDRQ----------IGE 139 (254)
T ss_pred cccccCCCCCcCHHHHHHccCccc------------ccccccccHHHHHHHHHHHHHcCchhhhCCc----------ccc
Confidence 966 347788998876542110 0001111111236678899999998776543 246
Q ss_pred CChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCC-chhhccceEEEEcCC
Q 001446 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls-~i~~~~~~l~l~~g~ 1065 (1075)
|||||+||+.|||||+.+|++|+|||||+++|+.++..+++++++ .||||++|+|.++ ..+|.|+++-| ++.
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~ 215 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRH 215 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCe
Confidence 999999999999999999999999999999999999998887643 5999999999996 67899999988 443
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=346.55 Aligned_cols=197 Identities=29% Similarity=0.437 Sum_probs=167.9
Q ss_pred EEEEeEEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc-c---------c
Q 001446 182 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-D---------L 248 (1075)
Q Consensus 182 i~~~~v~~~~~~~---~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~-~---------~ 248 (1075)
++++|+++.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4689999999643 6799999999999999999999999999999999999999999999998641 1 2
Q ss_pred cccEEEEcCCCCCCcC-CHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHH
Q 001446 249 NKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 327 (1075)
Q Consensus 249 ~~~i~~v~Q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lA 327 (1075)
++.++|+||+|.++.. |++||+.++............+++.++++.+++.+..++.+ .+||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la 152 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP--------SELSGGQQQRVAIA 152 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcCh--------hhcCHHHHHHHHHH
Confidence 3579999999988775 99999987543211111112346778999999988877766 68999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 328 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 328 ral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
|||+.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+..||++++|++
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~ 215 (218)
T cd03255 153 RALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRD 215 (218)
T ss_pred HHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeC
Confidence 999999999999999999999999999887754 37899999999998889999999976
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=363.39 Aligned_cols=198 Identities=26% Similarity=0.398 Sum_probs=172.6
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC----ccccccEEEE
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYV 255 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~----~~~~~~i~~v 255 (1075)
..|+++|+++.|+ +.++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ...+++|+||
T Consensus 5 ~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 5 NFVVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred cEEEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4799999999995 4679999999999999999999999999999999999999999999999964 1224689999
Q ss_pred cCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCC
Q 001446 256 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 334 (1075)
Q Consensus 256 ~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p 334 (1075)
||++.+|+ .|++||+.|+............+++.++++.+++.++.++.| .+|||||||||+|||||+.+|
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~--------~~LSgGq~QRVaLARaL~~~P 155 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV--------DQISGGQQQRVALARALILKP 155 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHHHHcCC
Confidence 99998886 599999999864322111223457788999999999988887 689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 335 KFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 335 ~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
+++|||||||+||+..+.++.+.+++ .|+|+|+||||.+.+ ..+|+|++|++
T Consensus 156 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~ 212 (351)
T PRK11432 156 KVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNK 212 (351)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999998887753 489999999999886 67999999986
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=343.41 Aligned_cols=197 Identities=27% Similarity=0.347 Sum_probs=167.8
Q ss_pred EEEEeEEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-ccccccEEEEcC
Q 001446 182 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQ 257 (1075)
Q Consensus 182 i~~~~v~~~~~~~---~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-~~~~~~i~~v~Q 257 (1075)
++++|+++.|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 4689999999642 579999999999999999999999999999999999999999999999864 234568999999
Q ss_pred CCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCE
Q 001446 258 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 336 (1075)
Q Consensus 258 ~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~i 336 (1075)
+|.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+.+|++
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrl~la~al~~~p~l 152 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP--------HQLSGGMRQRVALARALAVDPDV 152 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc--------ccCCHHHHHHHHHHHHHHcCCCE
Confidence 998876 699999987532111111112356778999999988888766 68999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 337 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 337 llLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
+||||||++||+.++..+++.+++ .++|+|++||+++.+ ..||++++|++
T Consensus 153 llLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 207 (220)
T cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSA 207 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 999999999999999999888753 378999999999976 57999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=339.44 Aligned_cols=192 Identities=30% Similarity=0.404 Sum_probs=166.4
Q ss_pred EEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC---ccccccEEEEcCCC
Q 001446 183 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---SDLNKEIFYVPQRP 259 (1075)
Q Consensus 183 ~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~---~~~~~~i~~v~Q~~ 259 (1075)
+++|+++.|++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+||+|
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 367899998643679999999999999999999999999999999999999999999999864 22356799999998
Q ss_pred --CCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEE
Q 001446 260 --YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 337 (1075)
Q Consensus 260 --~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~il 337 (1075)
.++..|++||+.++..... ....++.++++.+++.+..++.| .+||||||||++|||||+.+|+++
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 81 DYQLFTDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHP--------LSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCc--------hhCCHHHHHHHHHHHHHHhCCCEE
Confidence 3567899999987643211 12356788999999998888776 689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 338 ILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 338 lLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 201 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLAN 201 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999888764 4889999999999885 6999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=329.74 Aligned_cols=200 Identities=21% Similarity=0.234 Sum_probs=167.1
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEc
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~Vp 915 (1075)
.+++++|+..|++ ..||+|+||+|++||.|+|+||||||||||++++.||..|++|+|.++|..+... ...++||+
T Consensus 3 ~l~i~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p---~~~~~~vF 78 (248)
T COG1116 3 LLEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP---GPDIGYVF 78 (248)
T ss_pred eEEEEeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC---CCCEEEEe
Confidence 4789999999976 7899999999999999999999999999999999999999999999999987433 34599999
Q ss_pred CCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCC
Q 001446 916 QRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 994 (1075)
Q Consensus 916 QdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 994 (1075)
|++.||+ -|+++|+.+|..... . ......+.+.++|+.+||..+-+. +..+||
T Consensus 79 Q~~~LlPW~Tv~~NV~l~l~~~~--~--------------~~~e~~~~a~~~L~~VgL~~~~~~----------~P~qLS 132 (248)
T COG1116 79 QEDALLPWLTVLDNVALGLELRG--K--------------SKAEARERAKELLELVGLAGFEDK----------YPHQLS 132 (248)
T ss_pred ccCcccchhhHHhhheehhhccc--c--------------chHhHHHHHHHHHHHcCCcchhhc----------CccccC
Confidence 9999998 699999988653100 0 000012345678899998655433 346799
Q ss_pred hhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHH----HhcCceEEEecCCCC-chhhccceEEEEcCC
Q 001446 995 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLA----KDMGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 995 gGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~----~~~~~TvI~IaHRls-~i~~~~~~l~l~~g~ 1065 (1075)
||||||+||||||+.+|+||+||||-||||+-|...+|+.+ ++.++||+.|||..+ .+-..|++++|.++-
T Consensus 133 GGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P 208 (248)
T COG1116 133 GGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRP 208 (248)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCC
Confidence 99999999999999999999999999999999988877654 346899999999995 888999999997654
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=325.66 Aligned_cols=203 Identities=29% Similarity=0.355 Sum_probs=161.1
Q ss_pred ceEEeeeeeeCCCcc---ccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc---CCcC
Q 001446 836 SISFSKLDIITPSQK---LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGC 909 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~---~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~---~~r~ 909 (1075)
-++.+|++++|+... ++|+||||+|.+||++||||+||||||||.++|.|+-.|.+|+|.+||..+.... ..+.
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 378999999998765 7999999999999999999999999999999999999999999999998776642 3355
Q ss_pred cEEEEcCCCCC---CCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccc
Q 001446 910 GIFYVPQRPYT---CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 986 (1075)
Q Consensus 910 ~i~~VpQdP~L---f~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~ 986 (1075)
.+-+|+|||+- ..-|+++-|.-| +...+.+ ....++.++|+.|||..-.-
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Ep----------l~~~~~~--------~~~~~i~~~L~~VgL~~~~l--------- 135 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEP----------LRPHGLS--------KSQQRIAELLDQVGLPPSFL--------- 135 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhh----------hccCCcc--------HHHHHHHHHHHHcCCCHHHH---------
Confidence 69999999973 123555544322 2211111 12334778888888843221
Q ss_pred cccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHH----hcCceEEEecCCCCchh-hccceEEE
Q 001446 987 LNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPALIP-FHSLELRL 1061 (1075)
Q Consensus 987 ~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~----~~~~TvI~IaHRls~i~-~~~~~l~l 1061 (1075)
..+...||||||||+||||||.-+||+||||||||+||+-++..|.+++. +.+.|+|.|+|.++.+. ++|++.+|
T Consensus 136 ~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm 215 (252)
T COG1124 136 DRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVM 215 (252)
T ss_pred hcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeee
Confidence 12345699999999999999999999999999999999999998877653 36889999999999765 78999999
Q ss_pred EcCC
Q 001446 1062 IDGE 1065 (1075)
Q Consensus 1062 ~~g~ 1065 (1075)
.+|.
T Consensus 216 ~~G~ 219 (252)
T COG1124 216 DNGQ 219 (252)
T ss_pred eCCe
Confidence 7765
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=342.00 Aligned_cols=196 Identities=30% Similarity=0.440 Sum_probs=166.5
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC----ccccccEEEEcC
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 257 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~----~~~~~~i~~v~Q 257 (1075)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYG-SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeC-CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 46899999996 4679999999999999999999999999999999999999999999999864 123457999999
Q ss_pred CCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCE
Q 001446 258 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 336 (1075)
Q Consensus 258 ~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~i 336 (1075)
+|.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+.+|++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP--------HELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 998775 599999987532211111112345778899999988888766 68999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 337 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 337 llLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
+||||||++||+.++..+++.+++ .|+|+|++||+++.+ ..||++++|++
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~ 206 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNE 206 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEEC
Confidence 999999999999999999888764 388999999999986 56999999986
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=340.85 Aligned_cols=197 Identities=30% Similarity=0.438 Sum_probs=168.2
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc---------cccccE
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNKEI 252 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~~~i 252 (1075)
++++|+++.|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 78999999996456899999999999999999999999999999999999999999999998641 135679
Q ss_pred EEEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 253 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 253 ~~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
+|+||+|.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~ 153 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP--------EQLSGGEQQRVAIARAIV 153 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHHHHHh
Confidence 99999998875 599999987532111111112356778999999988777766 689999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+. .||++++|++
T Consensus 154 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~ 212 (214)
T TIGR02673 154 NSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDD 212 (214)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecC
Confidence 99999999999999999999999888764 4899999999999876 5999999975
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=321.99 Aligned_cols=166 Identities=54% Similarity=0.997 Sum_probs=152.8
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCccccccEEEEcCCCCC
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 261 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~~ 261 (1075)
++++|+++.|++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++. ++++|++|++.+
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----~~i~~~~q~~~~ 75 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----EDLLFLPQRPYL 75 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----ceEEEECCCCcc
Confidence 468999999975568999999999999999999999999999999999999999999999873 579999999998
Q ss_pred CcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeC
Q 001446 262 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341 (1075)
Q Consensus 262 ~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~illLDE 341 (1075)
+..|++||+.++ .+ .+||||||||++||||++++|+++||||
T Consensus 76 ~~~tv~~nl~~~------------------------------~~--------~~LS~G~~~rv~laral~~~p~~lllDE 117 (166)
T cd03223 76 PLGTLREQLIYP------------------------------WD--------DVLSGGEQQRLAFARLLLHKPKFVFLDE 117 (166)
T ss_pred ccccHHHHhhcc------------------------------CC--------CCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 888999999753 12 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEEecChhhHhhCCeEEEEcCCCcE
Q 001446 342 CTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEW 390 (1075)
Q Consensus 342 pts~LD~~~~~~i~~~l~~~~~t~i~vtH~~~~~~~~d~i~~l~~~g~~ 390 (1075)
||++||+.+.+.+.+.+++.+.|+|++||+.+....||++++++++|+|
T Consensus 118 Pt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~~~d~i~~l~~~~~~ 166 (166)
T cd03223 118 ATSALDEESEDRLYQLLKELGITVISVGHRPSLWKFHDRVLDLDGEGGW 166 (166)
T ss_pred CccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHhhCCEEEEEcCCCCC
Confidence 9999999999999999988889999999999988899999999987754
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=351.55 Aligned_cols=199 Identities=24% Similarity=0.329 Sum_probs=170.8
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 254 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 254 (1075)
.++++|+++.|+++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 58999999999755679999999999999999999999999999999999999999999999964 123567999
Q ss_pred EcCCC--CCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcC
Q 001446 255 VPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 332 (1075)
Q Consensus 255 v~Q~~--~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~ 332 (1075)
+||+| .++..|+++|+.++............+++.++++.++|.+..++.| .+||||||||++|||||+.
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP--------YHLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh--------hhCCHHHHHHHHHHHHHHc
Confidence 99998 5677899999987633211111112345778999999998888877 6899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhH-hhCCeEEEEcCC
Q 001446 333 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 387 (1075)
Q Consensus 333 ~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~-~~~d~i~~l~~~ 387 (1075)
+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+ +.||++++|+++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999888754 389999999999987 579999999863
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=345.90 Aligned_cols=198 Identities=22% Similarity=0.336 Sum_probs=175.1
Q ss_pred cEEEEeEEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEE
Q 001446 181 YIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~-~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~ 253 (1075)
.|+++|+++.|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|.++|.+ ..++++|+
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 4899999999974 4679999999999999999999999999999999999998 78999999964 24567899
Q ss_pred EEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChhHHHHHHHHHHH
Q 001446 254 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 330 (1075)
Q Consensus 254 ~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqRl~lAral 330 (1075)
|+||+|.+|++|+++|+.... ...++++.++++.++|.+..+++|.+..+ +.|..||||||||++||||+
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~-------~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYG-------KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred EECCCcccchhhHHHHhhhcc-------CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999996321 12356788899999999999998865332 46788999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 331 YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 331 ~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
+++|+++||||||++||+.+...+.+.+++ .++|+|+|||+++.+..||+|++|++
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~ 211 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEE 211 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecC
Confidence 999999999999999999999999998875 47899999999999988999999986
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=361.64 Aligned_cols=198 Identities=25% Similarity=0.384 Sum_probs=172.4
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC----ccccccEEEEc
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 256 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~----~~~~~~i~~v~ 256 (1075)
.++++|+++.|+ +..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ...++.++|||
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 4 YLSIDNIRKRFG-AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred EEEEEEEEEEeC-CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 589999999996 4679999999999999999999999999999999999999999999999964 12356799999
Q ss_pred CCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCC
Q 001446 257 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 335 (1075)
Q Consensus 257 Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~ 335 (1075)
|++.+|+ .||+||+.|+.............++.++++.++|+++.++.| .+|||||||||+|||||+.+|+
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~--------~~LSgGq~QRvaLARaL~~~P~ 154 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP--------GQLSGGQQQRVALARALATSPG 154 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9998886 699999998754321111123456889999999999999887 6899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcCC
Q 001446 336 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 387 (1075)
Q Consensus 336 illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~~ 387 (1075)
++|||||||+||+.++..+.+.+++ .|.|+|+||||.+.+ ..||+|++|+++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G 211 (353)
T TIGR03265 155 LLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHG 211 (353)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999998887754 489999999999986 579999999863
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=345.17 Aligned_cols=196 Identities=27% Similarity=0.365 Sum_probs=166.4
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc---------cccccE
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNKEI 252 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~~~i 252 (1075)
++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.+
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 46899999995 46799999999999999999999999999999999999999999999998541 235679
Q ss_pred EEEcCCCCCCcC-CHHHHhcCCCCCCc-ccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHH
Q 001446 253 FYVPQRPYTAVG-TLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 330 (1075)
Q Consensus 253 ~~v~Q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral 330 (1075)
+|+||++.++.. |++||+.++..... .......+++.++++.+++.+..++.+ .+||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~ia~al 151 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP--------AELSGGMKKRVALARAL 151 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHHH
Confidence 999999988775 99999987532110 001112345678899999988777766 68999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 331 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 331 ~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
+.+|+++||||||++||+.++..+.+.+++ .|+|+|+|||+++.+. .||++++|++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~ 212 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYD 212 (235)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEEC
Confidence 999999999999999999999999888764 3889999999999875 6999999986
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=335.57 Aligned_cols=206 Identities=25% Similarity=0.291 Sum_probs=168.7
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEE
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFY 913 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~ 913 (1075)
.++++|++|.|+ ++++|+|+||+|++||.++|+||+|||||||+++|.|+..|.+|+|.+||.++.+++ .+-++++|
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 378999999997 678999999999999999999999999999999999999999999999999999873 35567999
Q ss_pred EcCCCCC-CCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccch-HHHHHHHHhCCchhhhhhhccCCcccccccc
Q 001446 914 VPQRPYT-CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILD-SYLKTILEGVRLSYLLEREEVGWDANLNWED 991 (1075)
Q Consensus 914 VpQdP~L-f~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d-~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 991 (1075)
|||+|.. |.-|++|=+.++....... + . .....| +.+.++|+.+++.++.++. -.
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~-----------~-~-~~~~~D~~~v~~aL~~~~~~~la~r~----------~~ 137 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGL-----------F-G-RPSKEDEEIVEEALELLGLEHLADRP----------VD 137 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCccccc-----------c-c-CCCHhHHHHHHHHHHHhCcHHHhcCc----------cc
Confidence 9999754 5569999887643210000 0 0 001112 2466778888887776543 24
Q ss_pred CCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHH----hcCceEEEecCCCC-chhhccceEEEEcCC
Q 001446 992 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 992 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~----~~~~TvI~IaHRls-~i~~~~~~l~l~~g~ 1065 (1075)
.||||||||+.|||||.++|+||+||||||+||...+-.+.++++ +.|+|+|+|.|.+. ..+|.|+++.|.+|+
T Consensus 138 ~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~ 216 (258)
T COG1120 138 ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGK 216 (258)
T ss_pred ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCe
Confidence 699999999999999999999999999999999999887766654 35899999999996 789999999998876
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=339.39 Aligned_cols=197 Identities=25% Similarity=0.337 Sum_probs=167.7
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc---------cccccE
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNKEI 252 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~~~i 252 (1075)
++++|+++.|++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 46899999997556799999999999999999999999999999999999999999999998631 134679
Q ss_pred EEEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 253 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 253 ~~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
+|+||+|.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~ 152 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP--------AELSGGEQQRVAIARAIV 152 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh--------hhcCHHHHHHHHHHHHHH
Confidence 99999998877 599999987532211111112345778899999988877766 689999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||+.+.+. .||++++|++
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 211 (214)
T cd03292 153 NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALER 211 (214)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999887754 4799999999999886 5899999975
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=343.44 Aligned_cols=197 Identities=24% Similarity=0.310 Sum_probs=167.2
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc-cccccEEEEcCCC
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-DLNKEIFYVPQRP 259 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~-~~~~~i~~v~Q~~ 259 (1075)
+++++|+++.|+ ++++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+. .....++|+||++
T Consensus 1 ml~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~ 79 (255)
T PRK11248 1 MLQISHLYADYG-GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE 79 (255)
T ss_pred CEEEEEEEEEeC-CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC
Confidence 378999999996 46799999999999999999999999999999999999999999999998642 2334699999999
Q ss_pred CCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEEE
Q 001446 260 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 338 (1075)
Q Consensus 260 ~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~ill 338 (1075)
.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+.+|+++|
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGq~qrl~laral~~~p~lll 151 (255)
T PRK11248 80 GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYI--------WQLSGGQRQRVGIARALAANPQLLL 151 (255)
T ss_pred ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCCh--------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8776 599999987532111111112345778999999988777765 6899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 339 LDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 339 LDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|||||++||+.+...+.+.+++ .|+|+|++||+++.+ ..||++++|++
T Consensus 152 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~ 204 (255)
T PRK11248 152 LDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSP 204 (255)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999887754 389999999999987 46999999985
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=341.17 Aligned_cols=198 Identities=24% Similarity=0.360 Sum_probs=168.0
Q ss_pred cEEEEeEEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc-c--------c
Q 001446 181 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-D--------L 248 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~---~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~-~--------~ 248 (1075)
.++++||++.|+++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 68999999999743 4799999999999999999999999999999999999999999999998641 1 1
Q ss_pred -cccEEEEcCCCCCCcC-CHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHH
Q 001446 249 -NKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 326 (1075)
Q Consensus 249 -~~~i~~v~Q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~l 326 (1075)
++.++|+||+|.++.. |++||+.++............+++.++++.+++.+..++.+ .+||||||||++|
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgG~~qrl~l 156 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP--------SELSGGERQRVAI 156 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCh--------hhCCHHHHHHHHH
Confidence 2579999999987764 99999987432111111112346778999999988777765 6899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 327 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 327 Aral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
|||++.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+..+|++++|++
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~ 220 (233)
T PRK11629 157 ARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRD 220 (233)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEEC
Confidence 9999999999999999999999999999887754 37999999999999988899999976
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=359.62 Aligned_cols=198 Identities=26% Similarity=0.405 Sum_probs=171.7
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc----cccccEEEE
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYV 255 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v 255 (1075)
..++++|+++.|+ +.++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|.+. ..++.++||
T Consensus 13 ~~L~l~~l~~~~~-~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 91 (375)
T PRK09452 13 PLVELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTV 91 (375)
T ss_pred ceEEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4699999999996 46799999999999999999999999999999999999999999999999641 224679999
Q ss_pred cCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCC
Q 001446 256 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 334 (1075)
Q Consensus 256 ~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p 334 (1075)
||++.+|+ .||+||+.|+............+++.++++.++|.++.++.| .+|||||||||+|||||+.+|
T Consensus 92 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p--------~~LSgGq~QRVaLARaL~~~P 163 (375)
T PRK09452 92 FQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP--------HQLSGGQQQRVAIARAVVNKP 163 (375)
T ss_pred ecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh--------hhCCHHHHHHHHHHHHHhcCC
Confidence 99998876 499999999764322111112346778999999999999988 689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 335 KFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 335 ~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
+++|||||||+||...+..+.+.+++ .|+|+|+||||.+.+ ..+|+|++|++
T Consensus 164 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~ 220 (375)
T PRK09452 164 KVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRD 220 (375)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999998887754 489999999999886 57999999986
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=337.67 Aligned_cols=194 Identities=32% Similarity=0.462 Sum_probs=165.1
Q ss_pred EEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-ccccccEEEEcCCCCC-
Q 001446 184 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRPYT- 261 (1075)
Q Consensus 184 ~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-~~~~~~i~~v~Q~~~~- 261 (1075)
++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+||+|.+
T Consensus 2 ~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 2 VEDLTVSYG-GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred cccceeEEC-CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 678999886 3679999999999999999999999999999999999999999999999865 2345679999999876
Q ss_pred --CcCCHHHHhcCCCCCCc----ccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCC
Q 001446 262 --AVGTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 335 (1075)
Q Consensus 262 --~~~tv~~ni~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~ 335 (1075)
+..|++||+.++..... .......+++.++++.+++.+..++.+ .+||||||||++|||||+.+|+
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~al~~~p~ 152 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI--------GELSGGQQQRVLLARALVQDPD 152 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc--------ccCCHHHHHHHHHHHHHHcCCC
Confidence 45799999987643210 001112356778999999988877766 6899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 336 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 336 illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 207 (213)
T cd03235 153 LLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR 207 (213)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcC
Confidence 9999999999999999999887764 4789999999999875 6999999975
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=339.17 Aligned_cols=197 Identities=25% Similarity=0.361 Sum_probs=166.6
Q ss_pred EEEEeEEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc------c---cc
Q 001446 182 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D---LN 249 (1075)
Q Consensus 182 i~~~~v~~~~~~~---~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~---~~ 249 (1075)
++++||++.|+++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . ++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 6899999999642 4799999999999999999999999999999999999999999999998641 1 12
Q ss_pred -ccEEEEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHH
Q 001446 250 -KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 327 (1075)
Q Consensus 250 -~~i~~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lA 327 (1075)
+.++|+||++.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la 153 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP--------SELSGGERQRVAIA 153 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHH
Confidence 57999999998875 599999987432111101112345678899999988877766 68999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 328 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 328 ral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
|||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+..+|++++|++
T Consensus 154 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~ 216 (221)
T TIGR02211 154 RALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKD 216 (221)
T ss_pred HHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeC
Confidence 999999999999999999999999999887753 37899999999999888999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-39 Score=338.49 Aligned_cols=196 Identities=29% Similarity=0.420 Sum_probs=164.3
Q ss_pred EEEeEEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEEE
Q 001446 183 EFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 255 (1075)
Q Consensus 183 ~~~~v~~~~~~~-~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v 255 (1075)
+++|+++.|++. +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 367999998642 579999999999999999999999999999999999999999999999853 1234679999
Q ss_pred cCCCC--CCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCC
Q 001446 256 PQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 333 (1075)
Q Consensus 256 ~Q~~~--~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~ 333 (1075)
||+|. ++..|++||+.++.............++.++++.+++.+..++.+ .+||||||||++|||||+.+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP--------FTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHHHHHHHHHHHhcC
Confidence 99983 567899999987532111001112345677899999988777766 68999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHhh-CCeEEEEcC
Q 001446 334 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSLDG 386 (1075)
Q Consensus 334 p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~~-~d~i~~l~~ 386 (1075)
|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+.. ||++++|++
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999888754 37899999999998864 999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=351.23 Aligned_cols=197 Identities=25% Similarity=0.357 Sum_probs=166.8
Q ss_pred EEEEeEEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc--------ccc
Q 001446 182 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLN 249 (1075)
Q Consensus 182 i~~~~v~~~~~~~----~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~--------~~~ 249 (1075)
++++||++.|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 7899999999742 4799999999999999999999999999999999999999999999999641 235
Q ss_pred ccEEEEcCCC--CCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCCh--hHHhcCCCCcccCCCCCCChhHHHHHH
Q 001446 250 KEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQRLG 325 (1075)
Q Consensus 250 ~~i~~v~Q~~--~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~g~~LSgGqkqRl~ 325 (1075)
++++||||+| .++..|++||+.++............+++.++++.++|. +..++.+ .+||||||||++
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~--------~~LSgGq~qrv~ 154 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSP--------FELSGGQKRRVA 154 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCc--------ccCCHHHHHHHH
Confidence 6899999998 466789999998753221111111234577899999997 5566655 689999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 326 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 326 lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|||||+.+|+++||||||++||+.+..++.+.+++ .|+|+|++||+++.+ ..||+|++|++
T Consensus 155 iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~ 220 (287)
T PRK13637 155 IAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNK 220 (287)
T ss_pred HHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999887753 389999999999987 57999999986
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=359.74 Aligned_cols=198 Identities=22% Similarity=0.311 Sum_probs=171.4
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCc--cEEEeCCcCc----cccccEE
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS--GHIAKPGVGS----DLNKEIF 253 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~--G~i~~~~~~~----~~~~~i~ 253 (1075)
+.++++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+. ..++.|+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 4 GGIRIDHLRVAYG-ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred eEEEEEEEEEEEC-CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEE
Confidence 4689999999996 4679999999999999999999999999999999999999999 9999998641 2346799
Q ss_pred EEcCCCCCCcC-CHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcC
Q 001446 254 YVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 332 (1075)
Q Consensus 254 ~v~Q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~ 332 (1075)
||||++.+|.. ||+||+.|+.............++.++++.++|+++.++.| .+|||||||||+|||||+.
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~--------~~LSgGq~QRvaLARAL~~ 154 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP--------AQLSGGMQQRIAIARAIAI 154 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh--------hhCCHHHHHHHHHHHHHhc
Confidence 99999988764 99999998754222111122356788999999999999988 6899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---c--CCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 333 KPKFAILDECTSAVTTDMEERFCAKVRA---M--GTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 333 ~p~illLDEpts~LD~~~~~~i~~~l~~---~--~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
+|+++|||||||+||+..+..+.+.+++ . |+|+|+||||++.+ ..+|+|++|++
T Consensus 155 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~ 214 (362)
T TIGR03258 155 EPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKD 214 (362)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999998887653 2 78999999999986 57999999986
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=349.41 Aligned_cols=198 Identities=28% Similarity=0.361 Sum_probs=169.9
Q ss_pred cEEEEeEEEEcCC--CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccE
Q 001446 181 YIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 252 (1075)
Q Consensus 181 ~i~~~~v~~~~~~--~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i 252 (1075)
.++++|+++.|++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 5899999999964 2469999999999999999999999999999999999999999999999964 1245689
Q ss_pred EEEcCCCC--CCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHH
Q 001446 253 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 330 (1075)
Q Consensus 253 ~~v~Q~~~--~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral 330 (1075)
+|+||+|. ++..|++|||.++............+++.++++.++|.++.++.| .+||||||||++|||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LSgGq~qrv~lAral 155 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP--------ARLSGGQKQRVAIAGAV 155 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc--------ccCCHHHHHHHHHHHHH
Confidence 99999984 456799999998643211111112356788999999998888877 68999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 331 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 331 ~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
+.+|++|||||||++||+.+...+.+.+++ .|+|+|++||+++.+..||++++|++
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~ 215 (279)
T PRK13650 156 AMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKN 215 (279)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEEC
Confidence 999999999999999999999998887653 38999999999998888999999976
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=341.15 Aligned_cols=197 Identities=27% Similarity=0.390 Sum_probs=167.0
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc----cccccEEEEc
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVP 256 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v~ 256 (1075)
.++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|+|
T Consensus 2 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 2 SIEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 3789999999964 6799999999999999999999999999999999999999999999998641 1245799999
Q ss_pred CCCCCCc-CCHHHHhcCCCCCCcc----cCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 257 QRPYTAV-GTLRDQLIYPLTSDQE----VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 257 Q~~~~~~-~tv~~ni~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
|+|.++. .|++||+.++...... ......+++.++++.+++.+..++.+ .+||||||||++|||||+
T Consensus 81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~ 152 (239)
T cd03296 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP--------AQLSGGQRQRVALARALA 152 (239)
T ss_pred cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh--------hhCCHHHHHHHHHHHHHh
Confidence 9998875 5999999876432111 00112345678899999988877766 689999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+ ..||++++|++
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~ 212 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNK 212 (239)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999887754 378999999999976 46999999975
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=352.78 Aligned_cols=200 Identities=22% Similarity=0.273 Sum_probs=168.5
Q ss_pred CccEEEEeEEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC--c------
Q 001446 179 ANYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--S------ 246 (1075)
Q Consensus 179 ~~~i~~~~v~~~~~~~----~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~--~------ 246 (1075)
...|+++|+++.|+++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 3579999999999642 469999999999999999999999999999999999999999999999843 1
Q ss_pred --------------cccccEEEEcCCC--CCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCCh-hHHhcCCCCcc
Q 001446 247 --------------DLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKE 309 (1075)
Q Consensus 247 --------------~~~~~i~~v~Q~~--~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~ 309 (1075)
.++++++||||+| +++..|++||+.++.............++.++++.++|. .+.++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---- 174 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP---- 174 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc----
Confidence 2356799999998 678889999998864221111111234567789999996 5666655
Q ss_pred cCCCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhH-hhCCeEEEEc
Q 001446 310 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLD 385 (1075)
Q Consensus 310 ~~~g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~-~~~d~i~~l~ 385 (1075)
.+||||||||++|||||+.+|+++||||||++||+.++..+++.+++ .|+|+|+||||++.+ ..||+|++|+
T Consensus 175 ----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~ 250 (320)
T PRK13631 175 ----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMD 250 (320)
T ss_pred ----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 68999999999999999999999999999999999999999887753 489999999999976 5799999998
Q ss_pred C
Q 001446 386 G 386 (1075)
Q Consensus 386 ~ 386 (1075)
+
T Consensus 251 ~ 251 (320)
T PRK13631 251 K 251 (320)
T ss_pred C
Confidence 6
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=338.56 Aligned_cols=197 Identities=24% Similarity=0.310 Sum_probs=167.4
Q ss_pred EEEEeEEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----ccccccEE
Q 001446 182 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIF 253 (1075)
Q Consensus 182 i~~~~v~~~~~~~---~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~ 253 (1075)
++++|+++.|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 7899999999743 179999999999999999999999999999999999999999999999864 13456899
Q ss_pred EEcCCCCCCcC-CHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcC
Q 001446 254 YVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 332 (1075)
Q Consensus 254 ~v~Q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~ 332 (1075)
|+||+|.++.. |++||+.+.............+++.++++.+++.+..++.+ .+||||||||++||||++.
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV--------GGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhh--------hhcCHHHHHHHHHHHHHhc
Confidence 99999988774 99999976432111111112346778999999988877765 6899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 333 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 333 ~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .+|++++|++
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~ 211 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHR 211 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999888764 4889999999998764 6999999976
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=313.05 Aligned_cols=198 Identities=26% Similarity=0.311 Sum_probs=172.1
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----ccccccEEEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 255 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v 255 (1075)
++++.+++++|++...+++|+||+++.||+++|.||||+||||+||+|++++.|++|+|.++|.+ ...+++||.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 47889999999875569999999999999999999999999999999999999999999999975 3467899999
Q ss_pred cCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCC
Q 001446 256 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 334 (1075)
Q Consensus 256 ~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p 334 (1075)
+-+..++. .|++|||.|..............++.++.+.++|.+.+++.. .++|-|+||||+|||||+++|
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv--------~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRV--------GEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHH--------hhhchhhHHHHHHHHHHhcCC
Confidence 96665655 599999987543333333344667888999999999998865 589999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHH---hcCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 335 KFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 335 ~illLDEpts~LD~~~~~~i~~~l~---~~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
++++|||||||||..+.+.+.+.++ ..|+++|+.||.++.++ .||+++++++
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~ 208 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHK 208 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEec
Confidence 9999999999999999988877654 46999999999999987 8999999986
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=337.06 Aligned_cols=197 Identities=25% Similarity=0.337 Sum_probs=166.8
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc---------cccccE
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNKEI 252 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~~~i 252 (1075)
++++|+++.|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 78999999995456899999999999999999999999999999999999999999999998641 135679
Q ss_pred EEEcCCCCC-CcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 253 FYVPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 253 ~~v~Q~~~~-~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
+|+||+|.+ +..|++||+.++............+++.++++.+++.+..++.+ .+||||||||++||||++
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~ 153 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP--------IQLSGGEQQRVGIARAVV 153 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCc--------hhCCHHHHHHHHHHHHHH
Confidence 999999986 45699999987532211111112235668899999988877766 689999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
.+|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++.+. .||++++|++
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 212 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSD 212 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999998887754 4789999999999886 5899999986
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=357.27 Aligned_cols=198 Identities=27% Similarity=0.376 Sum_probs=169.2
Q ss_pred cEEEEeEEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc---------cc
Q 001446 181 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DL 248 (1075)
Q Consensus 181 ~i~~~~v~~~~~~---~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~ 248 (1075)
+|+++|+++.|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 3789999999962 35799999999999999999999999999999999999999999999998641 12
Q ss_pred cccEEEEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHH
Q 001446 249 NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 327 (1075)
Q Consensus 249 ~~~i~~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lA 327 (1075)
+++|+|+||++.++. .|++||+.++............+++.++++.++|.+..++.| .+||||||||++||
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LSgGq~qRv~lA 152 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP--------AQLSGGQKQRVAIA 152 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh--------hhCCHHHHHHHHHH
Confidence 568999999998876 699999987643211111112346778999999998888776 68999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 328 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 328 ral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|||+++|+++||||||++||+.++..+++.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~ 216 (343)
T PRK11153 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDA 216 (343)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999888764 3889999999999875 6999999986
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=335.51 Aligned_cols=196 Identities=24% Similarity=0.375 Sum_probs=166.0
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc----cccccEEEEcC
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVPQ 257 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v~Q 257 (1075)
++++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|+||
T Consensus 1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 468999999864 6799999999999999999999999999999999999999999999998641 12357999999
Q ss_pred CCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCE
Q 001446 258 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 336 (1075)
Q Consensus 258 ~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~i 336 (1075)
++.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+.+|++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP--------KQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 998875 599999987532211111112345678899999988888776 68999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 337 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 337 llLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
+||||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|+++++++
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 206 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMND 206 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 999999999999999999887754 3889999999998875 6999999975
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=350.74 Aligned_cols=197 Identities=19% Similarity=0.266 Sum_probs=167.1
Q ss_pred EEEEeEEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------------
Q 001446 182 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------------ 245 (1075)
Q Consensus 182 i~~~~v~~~~~~~----~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------------ 245 (1075)
|+++|+++.|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 7899999999753 259999999999999999999999999999999999999999999998642
Q ss_pred ------------------ccccccEEEEcCCC--CCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCCh-hHHhcC
Q 001446 246 ------------------SDLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRY 304 (1075)
Q Consensus 246 ------------------~~~~~~i~~v~Q~~--~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~ 304 (1075)
..+++.||||||+| .++..||+|||.|+............+++.++++.++|. ++.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 162 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRS 162 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC
Confidence 12356799999987 467779999999864322111112245678899999996 677776
Q ss_pred CCCcccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhH-hhCCe
Q 001446 305 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDV 380 (1075)
Q Consensus 305 ~~~~~~~~g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~-~~~d~ 380 (1075)
| .+||||||||++|||||+.+|+++||||||++||+.....+.+.+++ .|+|+|+||||++.+ ..||+
T Consensus 163 ~--------~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adr 234 (305)
T PRK13651 163 P--------FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKR 234 (305)
T ss_pred h--------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCE
Confidence 6 68999999999999999999999999999999999999998887754 489999999999876 67999
Q ss_pred EEEEcC
Q 001446 381 VLSLDG 386 (1075)
Q Consensus 381 i~~l~~ 386 (1075)
|++|++
T Consensus 235 v~vl~~ 240 (305)
T PRK13651 235 TIFFKD 240 (305)
T ss_pred EEEEEC
Confidence 999976
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=355.48 Aligned_cols=197 Identities=26% Similarity=0.402 Sum_probs=170.2
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc----cccccEEEEc
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVP 256 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v~ 256 (1075)
.|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..+++++|||
T Consensus 2 ~L~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSFG-RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEeC-CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 378999999996 46799999999999999999999999999999999999999999999999641 2346799999
Q ss_pred CCCCCCc-CCHHHHhcCCCCCC----cccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 257 QRPYTAV-GTLRDQLIYPLTSD----QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 257 Q~~~~~~-~tv~~ni~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
|++.+++ .|++||+.|+.... ........+++.++++.++|.++.++.| .+||||||||++|||||+
T Consensus 81 Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP--------AQLSGGQKQRVALARALA 152 (353)
T ss_pred cCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh--------hhCCHHHHHHHHHHHHHh
Confidence 9998876 59999999875421 1011122456788999999999888887 689999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
.+|+++||||||++||+.++..+.+.+++ .|+|+|+||||++.+ ..||+|++|++
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~ 212 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQ 212 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999998887753 388999999999986 56999999986
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=349.61 Aligned_cols=198 Identities=23% Similarity=0.288 Sum_probs=167.6
Q ss_pred cEEEEeEEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc----------
Q 001446 181 YIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------- 246 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~----~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------- 246 (1075)
+|+++|+++.|+.+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 37899999999743 2599999999999999999999999999999999999999999999998641
Q ss_pred cccccEEEEcCCC--CCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCCh-hHHhcCCCCcccCCCCCCChhHHHH
Q 001446 247 DLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 323 (1075)
Q Consensus 247 ~~~~~i~~v~Q~~--~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqkqR 323 (1075)
.+++.++||+|+| .++..|+.||+.|+.............++.++++.++|. ++.++.| ..||||||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--------~~LSgGqkqr 152 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSP--------FELSGGQMRR 152 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCc--------ccCCHHHHHH
Confidence 2356799999998 677789999998864321111112234577889999995 4666655 6899999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 324 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 324 l~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
++|||||+.+|+++||||||++||+.++..+.+.+++ .|+|+|++|||++.+ ..||+|++|++
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~ 219 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEK 219 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999998887753 489999999999987 57999999986
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=359.18 Aligned_cols=197 Identities=21% Similarity=0.339 Sum_probs=169.4
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc----cccccEEEEc
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVP 256 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v~ 256 (1075)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..+++|+|||
T Consensus 3 ~l~i~~l~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAYG-DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 489999999996 46799999999999999999999999999999999999999999999998641 2246799999
Q ss_pred CCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCC
Q 001446 257 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 335 (1075)
Q Consensus 257 Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~ 335 (1075)
|++.++. .|++||+.++............+++.++++.++|.++.++.| .+|||||||||+|||||+.+|+
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~--------~~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP--------KALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9998876 599999998753221111122356788999999998888877 6899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 336 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 336 illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
+|||||||++||+.+++.+.+.+++ .|+|+|+||||++.+ ..||++++|++
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~ 209 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDA 209 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999988877653 389999999999876 57999999986
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=346.49 Aligned_cols=202 Identities=22% Similarity=0.303 Sum_probs=173.2
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEc
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~Vp 915 (1075)
.|+++||+..|.+.. +|+|+||+|+.||.++|+|||||||||++++|.||.+|++|+|.|||.|+++++..+++|++|+
T Consensus 3 ~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred EEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 589999999997655 9999999999999999999999999999999999999999999999999999976667799999
Q ss_pred CCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCC
Q 001446 916 QRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 994 (1075)
Q Consensus 916 QdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 994 (1075)
|++-||+- |+++||.||..... . .....+..+.++.+.++|.++.++.| .+||
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~~----------~------~k~ei~~rV~eva~~L~l~~lL~r~P----------~~LS 135 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLRG----------V------PKAEIDKRVKEVAKLLGLEHLLNRKP----------LQLS 135 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhCC----------C------chHHHHHHHHHHHHHcCChhHHhcCc----------ccCC
Confidence 99999975 99999999864210 0 00012556777888899988888775 5689
Q ss_pred hhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHH----HhcCceEEEecCCC-CchhhccceEEEEcC
Q 001446 995 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLA----KDMGITFVTSSQRP-ALIPFHSLELRLIDG 1064 (1075)
Q Consensus 995 gGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~----~~~~~TvI~IaHRl-s~i~~~~~~l~l~~g 1064 (1075)
||||||+||||||+|+|++++||||.|+||......+...+ ++.+.|+|.|+|+. +.+...|++.++.+|
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G 210 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDG 210 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCC
Confidence 99999999999999999999999999999999876654433 33589999999999 588899999999645
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=338.88 Aligned_cols=192 Identities=21% Similarity=0.309 Sum_probs=168.7
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-ccccccEEEEcCC
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQR 258 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-~~~~~~i~~v~Q~ 258 (1075)
..|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|++|+
T Consensus 11 ~~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~ 89 (257)
T PRK11247 11 TPLLLNAVSKRYG-ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQD 89 (257)
T ss_pred CcEEEEEEEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecC
Confidence 4699999999996 4679999999999999999999999999999999999999999999998854 3446789999999
Q ss_pred CCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEE
Q 001446 259 PYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 337 (1075)
Q Consensus 259 ~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~il 337 (1075)
+.++. .|++||+.++... ..++++.++++.+++.+..++.+ .+||||||||++|||||+.+|+++
T Consensus 90 ~~l~~~~tv~enl~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGqkqrl~laraL~~~p~ll 155 (257)
T PRK11247 90 ARLLPWKKVIDNVGLGLKG------QWRDAALQALAAVGLADRANEWP--------AALSGGQKQRVALARALIHRPGLL 155 (257)
T ss_pred ccCCCCCcHHHHHHhcccc------hHHHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 98776 6999999876321 12356778999999988877766 689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 338 ILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 338 lLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
||||||++||+.+...+.+.+++ .++|+|++||+++.+ ..||++++|++
T Consensus 156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~ 209 (257)
T PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEE 209 (257)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999998887753 379999999999986 57999999986
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=341.33 Aligned_cols=197 Identities=24% Similarity=0.352 Sum_probs=167.3
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc---------cccccE
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNKEI 252 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~~~i 252 (1075)
++++|+++.|+.++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 78999999996346799999999999999999999999999999999999999999999998641 135679
Q ss_pred EEEcCCCCCCc-CCHHHHhcCCCCCCc--------ccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHH
Q 001446 253 FYVPQRPYTAV-GTLRDQLIYPLTSDQ--------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 323 (1075)
Q Consensus 253 ~~v~Q~~~~~~-~tv~~ni~~~~~~~~--------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqR 323 (1075)
+|+||++.++. .|++||+.++..... .......+++.++++.+++.+..++.+ .+||||||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qr 153 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA--------DQLSGGQQQR 153 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHHHH
Confidence 99999998776 599999987542110 001122356778899999988777765 6899999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 324 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 324 l~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
++|||||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..||++++|++
T Consensus 154 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKA 221 (243)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 9999999999999999999999999999998887754 378999999999987 57999999986
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=337.02 Aligned_cols=196 Identities=23% Similarity=0.241 Sum_probs=166.4
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----ccccccEEEEc
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 256 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v~ 256 (1075)
|+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+|
T Consensus 1 i~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYG-DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEEC-CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 46899999986 4679999999999999999999999999999999999999999999999854 12346799999
Q ss_pred CCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCC
Q 001446 257 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 335 (1075)
Q Consensus 257 Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~ 335 (1075)
|++.++. .|+++|+.++...........++++.++++.+++.+..++.+ .+||||||||++||||++.+|+
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qr~~la~al~~~p~ 151 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV--------KTYSGGMRRRLEIARSLVHRPE 151 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9998776 499999987532111111112346778999999988877766 6899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 336 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 336 illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~ 207 (220)
T cd03265 152 VLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDH 207 (220)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999887754 3889999999999875 6999999986
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=350.50 Aligned_cols=206 Identities=23% Similarity=0.231 Sum_probs=168.8
Q ss_pred CCCccEEEEeEEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCC-----CCccEEEeCCcCc----
Q 001446 177 SEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS---- 246 (1075)
Q Consensus 177 ~~~~~i~~~~v~~~~~~-~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~---- 246 (1075)
+..+.|+++|+++.|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 76 ~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred CcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34568999999999963 4579999999999999999999999999999999999986 5799999999752
Q ss_pred ----cccccEEEEcCCCCCCcCCHHHHhcCCCCCCccc-CcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHH
Q 001446 247 ----DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQ 321 (1075)
Q Consensus 247 ----~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqk 321 (1075)
.+++.++||||+|+++++|++||+.|+....... .....+.+.++++.+++.+.++.. ..+.+.+||||||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~----~~~~~~~LSgGqk 231 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDD----LDKAGNALSGGQQ 231 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhh----hhCCcccCCHHHH
Confidence 3467899999999999999999999753221110 001112356778888875432211 1133579999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhh-CCeEEEEcC
Q 001446 322 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAF-HDVVLSLDG 386 (1075)
Q Consensus 322 qRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~-~d~i~~l~~ 386 (1075)
||++||||++++|+|+||||||+|||+++...+.+.+++ .++|+|+|||+++.+.. ||+|++|++
T Consensus 232 qRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~ 299 (329)
T PRK14257 232 QRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQ 299 (329)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999998887764 37899999999999875 999999986
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=337.37 Aligned_cols=197 Identities=21% Similarity=0.248 Sum_probs=166.9
Q ss_pred EEEEeEEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----ccccccEEEE
Q 001446 182 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 255 (1075)
Q Consensus 182 i~~~~v~~~~~~~-~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v 255 (1075)
|+++|+++.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..++++++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 4689999999643 679999999999999999999999999999999999999999999999864 1245679999
Q ss_pred cCCCCCC-cCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCC
Q 001446 256 PQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 334 (1075)
Q Consensus 256 ~Q~~~~~-~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p 334 (1075)
+|++.++ ..|+++|+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+.+|
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p 152 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRA--------RTLSGGMKRKLSLAIALIGGP 152 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChh--------hhCCHHHHHHHHHHHHHhcCC
Confidence 9999887 4699999987532111111112345778899999988777655 689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 335 KFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 335 ~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .||+++++++
T Consensus 153 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 207 (220)
T cd03263 153 SVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSD 207 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEEC
Confidence 99999999999999999999988865 3689999999999885 6999999986
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=336.12 Aligned_cols=199 Identities=28% Similarity=0.357 Sum_probs=168.8
Q ss_pred ccEEEEeEEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc-c--------
Q 001446 180 NYIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-D-------- 247 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~---~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~-~-------- 247 (1075)
..++++|+++.|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 368999999999653 3699999999999999999999999999999999999999999999998641 1
Q ss_pred c-cccEEEEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHH
Q 001446 248 L-NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 325 (1075)
Q Consensus 248 ~-~~~i~~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~ 325 (1075)
. ++.++|+||+|.++. .|+.||+.++............+++.++++.+++.+..++.+ .+||||||||++
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Ge~qrl~ 156 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP--------AQLSGGEQQRVA 156 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh--------hhCCHHHHHHHH
Confidence 1 247999999998876 499999986432111111122456788999999998888776 689999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 326 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 326 lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
|||||+.+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+..+|+++++++
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~ 221 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVN 221 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999887753 37899999999998888999999975
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=350.69 Aligned_cols=198 Identities=24% Similarity=0.294 Sum_probs=168.9
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----ccccccEEE
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFY 254 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~ 254 (1075)
..++++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++|||
T Consensus 6 ~~i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 6 APIDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred ceEEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 4699999999996 4679999999999999999999999999999999999999999999999965 134578999
Q ss_pred EcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCC
Q 001446 255 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 333 (1075)
Q Consensus 255 v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~ 333 (1075)
|||++.++. .|++||+.+..............++.++++.+++.+..++.+ .+||||||||++|||||+++
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~aL~~~ 156 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKV--------GELSGGMKRRLTLARALVND 156 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCch--------hhCCHHHHHHHHHHHHHhCC
Confidence 999998775 699999986322111111112345678899999988777755 68999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 334 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 334 p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|+++||||||+|||+.+++.+.+.+++ .|+|+|++||+++.+. .||+|++|++
T Consensus 157 P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~ 213 (306)
T PRK13537 157 PDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEE 213 (306)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999887764 4899999999999885 6999999986
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=356.68 Aligned_cols=198 Identities=23% Similarity=0.391 Sum_probs=171.0
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC----ccccccEEEE
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYV 255 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~----~~~~~~i~~v 255 (1075)
..++++|+++.|+ +.++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ...++.++||
T Consensus 18 ~~l~l~~v~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 96 (377)
T PRK11607 18 PLLEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM 96 (377)
T ss_pred ceEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4699999999985 4679999999999999999999999999999999999999999999999964 1235689999
Q ss_pred cCCCCCCcC-CHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCC
Q 001446 256 PQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 334 (1075)
Q Consensus 256 ~Q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p 334 (1075)
||++.+|.. |+.||+.|+............+++.++++.+++.++.++.| .+|||||||||+|||||+.+|
T Consensus 97 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~--------~~LSgGq~QRVaLARAL~~~P 168 (377)
T PRK11607 97 FQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP--------HQLSGGQRQRVALARSLAKRP 168 (377)
T ss_pred eCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHHHhcCC
Confidence 999988864 99999998754321111222456788999999999988887 689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHH----hcCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 335 KFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 335 ~illLDEpts~LD~~~~~~i~~~l~----~~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
++||||||||+||...+..+.+.++ +.|.|+|+||||.+.+ ..+|++++|++
T Consensus 169 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~ 225 (377)
T PRK11607 169 KLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNR 225 (377)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999988876543 3589999999999985 57999999986
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=339.63 Aligned_cols=197 Identities=23% Similarity=0.354 Sum_probs=166.8
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc---------cccccE
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNKEI 252 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~~~i 252 (1075)
++++|+++.|++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 46899999996436799999999999999999999999999999999999999999999998641 134679
Q ss_pred EEEcCCCCCCc-CCHHHHhcCCCCCC--------cccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHH
Q 001446 253 FYVPQRPYTAV-GTLRDQLIYPLTSD--------QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 323 (1075)
Q Consensus 253 ~~v~Q~~~~~~-~tv~~ni~~~~~~~--------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqR 323 (1075)
+|+||++.++. .|++||+.++.... ........+++.++++.+++.+..++.+ .+||||||||
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qr 152 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA--------DQLSGGQQQR 152 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc--------ccCCHHHHHH
Confidence 99999998766 69999998753211 0001122345778899999987777755 6899999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 324 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 324 l~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
++|||||+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 153 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~ 220 (241)
T cd03256 153 VAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKD 220 (241)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999887754 3899999999999886 7999999986
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=355.66 Aligned_cols=186 Identities=28% Similarity=0.330 Sum_probs=161.3
Q ss_pred CCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccc----cccEEEEcCCCCCC
Q 001446 193 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDL----NKEIFYVPQRPYTA 262 (1075)
Q Consensus 193 ~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~----~~~i~~v~Q~~~~~ 262 (1075)
+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+ +++++||||+++++
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 35679999999999999999999999999999999999999999999999964 122 56899999999998
Q ss_pred c-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeC
Q 001446 263 V-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341 (1075)
Q Consensus 263 ~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~illLDE 341 (1075)
+ .||+||+.++............+++.++++.++|+.+.++.| .+|||||||||+|||||+.+|+++||||
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p--------~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP--------DELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 7 599999998643222111123456788999999999988887 6899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 342 CTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 342 pts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|||+||+.++..+++.+.+ .++|+|+||||++.+ +.||+|++|++
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~ 205 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKA 205 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999887753 389999999999975 67999999976
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=347.05 Aligned_cols=198 Identities=28% Similarity=0.374 Sum_probs=169.9
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----ccccccEEEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 255 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v 255 (1075)
.++++|+++.|..++.+|+|+||+|++|++++++||||||||||+|+|+|++.|++|+|.++|.+ ...++++||+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 47889999999645789999999999999999999999999999999999999999999999965 2456789999
Q ss_pred cCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCC
Q 001446 256 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 334 (1075)
Q Consensus 256 ~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p 334 (1075)
||+|.++. .|++||+.|.............+++.++++.++|.+..++.. ..||+|||||++||+||+++|
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~lS~G~kqrl~ia~aL~~~P 155 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKV--------RTLSGGMKQRLSIALALLHDP 155 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcch--------hhcCHHHHHHHHHHHHHhcCC
Confidence 99998665 599999987543322111233567889999999998544433 689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cC-CeEEEEecChhhHhh-CCeEEEEcC
Q 001446 335 KFAILDECTSAVTTDMEERFCAKVRA---MG-TSCITISHRPALVAF-HDVVLSLDG 386 (1075)
Q Consensus 335 ~illLDEpts~LD~~~~~~i~~~l~~---~~-~t~i~vtH~~~~~~~-~d~i~~l~~ 386 (1075)
+++||||||+|||+.++..+.+.+++ .| +||+++||.++.+.. ||+|+++++
T Consensus 156 ~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~ 212 (293)
T COG1131 156 ELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILND 212 (293)
T ss_pred CEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeC
Confidence 99999999999999999999888764 35 799999999998864 999999986
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=348.43 Aligned_cols=197 Identities=23% Similarity=0.284 Sum_probs=166.2
Q ss_pred EEEEeEEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc----------c
Q 001446 182 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------D 247 (1075)
Q Consensus 182 i~~~~v~~~~~~~----~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~----------~ 247 (1075)
++++|+++.|++. .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. .
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999642 4699999999999999999999999999999999999999999999999631 2
Q ss_pred ccccEEEEcCCC--CCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCCh-hHHhcCCCCcccCCCCCCChhHHHHH
Q 001446 248 LNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRL 324 (1075)
Q Consensus 248 ~~~~i~~v~Q~~--~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqkqRl 324 (1075)
.+++|+||||+| .++..|++||+.++............+++.++++.++|. +..++.| .+||||||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~~LSgGq~qrv 154 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSP--------FELSGGQMRRV 154 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCc--------ccCCHHHHHHH
Confidence 346799999998 567789999998763221111111224577889999996 5566655 68999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 325 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 325 ~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
+|||||+.+|+++||||||++||+.+...+.+.+++ .|.|||++||+++.+ ..||+|++|++
T Consensus 155 ~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~ 221 (290)
T PRK13634 155 AIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHK 221 (290)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999998887753 389999999999987 57999999985
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=346.34 Aligned_cols=199 Identities=22% Similarity=0.314 Sum_probs=169.8
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc--------ccccc
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKE 251 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~--------~~~~~ 251 (1075)
..++++|+++.|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 3699999999997557899999999999999999999999999999999999999999999999641 24567
Q ss_pred EEEEcCCC--CCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHH
Q 001446 252 IFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 329 (1075)
Q Consensus 252 i~~v~Q~~--~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAra 329 (1075)
++|+||+| .++..|++||+.++............+++.++++.++|.++.++.+ .+||||||||++||||
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LS~G~~qrl~lara 155 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPT--------HCLSFGQKKRVAIAGV 155 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCc--------ccCCHHHHHHHHHHHH
Confidence 99999998 4677899999987532211111112345778899999988877765 6899999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 330 FYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 330 l~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|+.+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~ 217 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKE 217 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999988887753 3899999999999986 7999999986
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=332.89 Aligned_cols=196 Identities=26% Similarity=0.328 Sum_probs=166.4
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC--ccccccEEEEcCCC
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--SDLNKEIFYVPQRP 259 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~--~~~~~~i~~v~Q~~ 259 (1075)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||++
T Consensus 1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 46899999986 4679999999999999999999999999999999999999999999999865 23456899999999
Q ss_pred CCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEEE
Q 001446 260 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 338 (1075)
Q Consensus 260 ~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~ill 338 (1075)
.++. .|++||+.+.............+++.++++.+++.+..++.+ .+||||||||++||||++.+|+++|
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~~~p~~ll 151 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV--------EELSKGNQQKVQFIAAVIHDPELLI 151 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcH--------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8876 499999986432111111112345778899999988777755 6899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 339 LDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 339 LDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .||++++|++
T Consensus 152 lDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 203 (210)
T cd03269 152 LDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNK 203 (210)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeC
Confidence 9999999999999999888764 4789999999999874 6999999986
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=352.94 Aligned_cols=203 Identities=21% Similarity=0.251 Sum_probs=168.0
Q ss_pred eEEeeeeeeCCC---ccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc-----CCc
Q 001446 837 ISFSKLDIITPS---QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSG 908 (1075)
Q Consensus 837 I~f~~V~~~yp~---~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~-----~~r 908 (1075)
|+|+||+++|++ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999963 247999999999999999999999999999999999999999999999999997652 246
Q ss_pred CcEEEEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc
Q 001446 909 CGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 987 (1075)
Q Consensus 909 ~~i~~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 987 (1075)
.+|+||||++.+|+ .|+++|+.+|... .+.. ....++.+.++++.++|.+...+.
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~----------~~~~------~~~~~~~v~e~l~~vgL~~~~~~~-------- 137 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLEL----------DNTP------KDEIKRKVTELLALVGLGDKHDSY-------- 137 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHcCCchhhhCC--------
Confidence 68999999999995 7999999875310 0000 000123456778888886554332
Q ss_pred ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEE
Q 001446 988 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLI 1062 (1075)
Q Consensus 988 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~~~~l~l~ 1062 (1075)
...||||||||++|||||+.+|+|||||||||+||+++...+.+++++ .+.|+|+|+|+++.+ +++|+++.|.
T Consensus 138 --~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~ 215 (343)
T TIGR02314 138 --PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVIS 215 (343)
T ss_pred --hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 356999999999999999999999999999999999999887776643 389999999999876 7899999998
Q ss_pred cCC
Q 001446 1063 DGE 1065 (1075)
Q Consensus 1063 ~g~ 1065 (1075)
+|.
T Consensus 216 ~G~ 218 (343)
T TIGR02314 216 NGE 218 (343)
T ss_pred CCE
Confidence 775
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=344.67 Aligned_cols=198 Identities=25% Similarity=0.328 Sum_probs=168.9
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc-------cccccEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------~~~~~i~ 253 (1075)
+++++|+++.|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.++
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 378999999996556799999999999999999999999999999999999999999999998641 2346799
Q ss_pred EEcCCCC--CCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 254 YVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 254 ~v~Q~~~--~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
|+||+|. ++..|++||+.++............+++.++++.+++.+..++.+ ..||||||||++|||||+
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSP--------KTLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCc--------ccCCHHHHHHHHHHHHHH
Confidence 9999985 456799999987532211111112345778899999998888766 689999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+..||+++++++
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~ 210 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDR 210 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEEC
Confidence 99999999999999999999999887753 48999999999999988999999986
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=344.53 Aligned_cols=198 Identities=27% Similarity=0.373 Sum_probs=170.5
Q ss_pred cEEEEeEEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEE
Q 001446 181 YIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~-~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~ 253 (1075)
.++++||++.|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 5899999999964 4579999999999999999999999999999999999999999999999964 12356799
Q ss_pred EEcCCC--CCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 254 YVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 254 ~v~Q~~--~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
|+||+| .++..|++||+.++............+++.++++.++|.++.++.| ..||||||||++|||||+
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP--------HRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc--------ccCCHHHHHHHHHHHHHH
Confidence 999998 4566799999987632211111112345788999999999888877 689999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
.+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+..||+++++++
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~ 215 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNK 215 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEEC
Confidence 99999999999999999999999888764 27999999999999888999999986
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=316.19 Aligned_cols=212 Identities=21% Similarity=0.253 Sum_probs=169.2
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc-----cCCcCc
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-----AGSGCG 910 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~-----~~~r~~ 910 (1075)
.|+++||+..||++..+|+||||+|++||.|||+||||||||||++.|.|++||++|+|.++|.++... ..+|.+
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 489999999999999999999999999999999999999999999999999999999999999999876 234678
Q ss_pred EEEEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccccc
Q 001446 911 IFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 989 (1075)
Q Consensus 911 i~~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~ 989 (1075)
+++|.|.|-|-+ -|+-+|+..+.-.....+.-+ .+. .+........++|+.+|+.+..-. .
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~sl--fgl------fsk~dk~~Al~aLervgi~~~A~q----------r 144 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSL--FGL------FSKEDKAQALDALERVGILDKAYQ----------R 144 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHH--hCC------CCHHHHHHHHHHHHHcCcHHHHHH----------H
Confidence 999999999875 589999865421111111110 000 001112334567788877443221 2
Q ss_pred ccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHH----hcCceEEEecCCCC-chhhccceEEEEcC
Q 001446 990 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPA-LIPFHSLELRLIDG 1064 (1075)
Q Consensus 990 g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~----~~~~TvI~IaHRls-~i~~~~~~l~l~~g 1064 (1075)
.++|||||+||++|||||..+|+|++-|||||+||+.+-+.+.+.++ +.|.|+|+.-|.+. ..+|+++++-|.+|
T Consensus 145 a~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G 224 (258)
T COG3638 145 ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAG 224 (258)
T ss_pred hccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCC
Confidence 45799999999999999999999999999999999999887766654 36999999999998 55799999999777
Q ss_pred C
Q 001446 1065 E 1065 (1075)
Q Consensus 1065 ~ 1065 (1075)
.
T Consensus 225 ~ 225 (258)
T COG3638 225 R 225 (258)
T ss_pred c
Confidence 5
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=330.92 Aligned_cols=192 Identities=22% Similarity=0.273 Sum_probs=167.2
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc----cccccEEEEcC
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVPQ 257 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v~Q 257 (1075)
++++|+++.|+ ++++|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|.+. ..++.++|+||
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEEC-CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 46899999995 46899999999999999999999999999999999999999999999998641 23567999999
Q ss_pred CCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCE
Q 001446 258 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 336 (1075)
Q Consensus 258 ~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~i 336 (1075)
++.++. .|++||+.++..... ...+++.++++.+++.+..++.+ .+||||||||++||||++.+|++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLG----IRKKRIDEVLDVVGLKDSAKKKV--------KGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHhhhH--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 998764 699999987532111 13456788999999988877765 68999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 337 AILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 337 llLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
+||||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|++++|++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~ 201 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINK 201 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEEC
Confidence 999999999999999999887764 4899999999999885 6999999986
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=335.52 Aligned_cols=203 Identities=25% Similarity=0.321 Sum_probs=165.3
Q ss_pred eEEeeeeeeCCCc-cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc-----CCcCc
Q 001446 837 ISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCG 910 (1075)
Q Consensus 837 I~f~~V~~~yp~~-~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~-----~~r~~ 910 (1075)
|+++||++.|++. +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+ ..|.+
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 6899999999754 57999999999999999999999999999999999999999999999999886542 23567
Q ss_pred EEEEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccccc
Q 001446 911 IFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 989 (1075)
Q Consensus 911 i~~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~ 989 (1075)
++|+||+|.+|. .|+++|+.++... .+. .....++.+.++++.+++.+...+.
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~----------~~~------~~~~~~~~~~~~l~~~~l~~~~~~~---------- 135 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRI----------IGV------PPRDANERVSAALEKVGLEGKAHAL---------- 135 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHh----------cCC------CHHHHHHHHHHHHHHcCChhhhhCC----------
Confidence 999999999987 5999999754210 000 0001134466777888775544332
Q ss_pred ccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCchh-hccceEEEEcCC
Q 001446 990 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIP-FHSLELRLIDGE 1065 (1075)
Q Consensus 990 g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i~-~~~~~l~l~~g~ 1065 (1075)
...||||||||++|||||+++|+||||||||++||.++...+.+.+++ .++|+|+|+|+++.+. +.|+++.+.+|.
T Consensus 136 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 136 PMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGR 215 (216)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 246999999999999999999999999999999999999888776643 4899999999998764 789999997653
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=333.04 Aligned_cols=195 Identities=25% Similarity=0.324 Sum_probs=165.9
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc-----cccccEEEEc
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-----DLNKEIFYVP 256 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~-----~~~~~i~~v~ 256 (1075)
++++|+++.|+ ++++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.++|+|
T Consensus 1 i~~~~~~~~~~-~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYG-KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEEC-CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 47899999985 457999999999999 9999999999999999999999999999999998641 2356799999
Q ss_pred CCCCCCcC-CHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCC
Q 001446 257 QRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 335 (1075)
Q Consensus 257 Q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~ 335 (1075)
|+|.++.. |++||+.+.............+++.++++.+++.+..++.+ .+||||||||++|||||+.+|+
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p~ 150 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI--------GSLSGGMRRRVGIAQALVGDPS 150 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99988775 99999986432111111112345778899999988777765 6899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 336 FAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 336 illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
++||||||++||+.+.+.+.+.+++. +.|+|++||+++.+. .+|++++|++
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~ 204 (211)
T cd03264 151 ILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNK 204 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999988653 689999999999885 6999999986
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=346.82 Aligned_cols=197 Identities=20% Similarity=0.305 Sum_probs=166.7
Q ss_pred EEEEeEEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc----------c
Q 001446 182 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------D 247 (1075)
Q Consensus 182 i~~~~v~~~~~~~----~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~----------~ 247 (1075)
++++|+++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999642 4699999999999999999999999999999999999999999999998541 2
Q ss_pred ccccEEEEcCCC--CCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCCh-hHHhcCCCCcccCCCCCCChhHHHHH
Q 001446 248 LNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRL 324 (1075)
Q Consensus 248 ~~~~i~~v~Q~~--~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqkqRl 324 (1075)
++++|+||||+| .++..|+.||+.++............+++.++++.+||. +..++.+ .+||||||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~~LSgGq~qrv 154 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--------FQMSGGQMRKI 154 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCc--------ccCCHHHHHHH
Confidence 456899999998 567779999998863221111111234567889999996 5666655 68999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 325 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 325 ~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
+|||||+.+|+++||||||++||+.+...+.+.+++ .|+|+|+|||+++.+ ..||++++|++
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~ 221 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKE 221 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999887753 389999999999987 57999999986
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=354.47 Aligned_cols=198 Identities=23% Similarity=0.321 Sum_probs=171.2
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 254 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 254 (1075)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .+++++++|
T Consensus 3 ~L~~~nls~~y~-~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFG-DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 589999999996 5789999999999999999999999999999999999999999999999964 234678999
Q ss_pred EcCCCCC-CcCCHHHHhcCCCCCCc-cc---CcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHH
Q 001446 255 VPQRPYT-AVGTLRDQLIYPLTSDQ-EV---EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 329 (1075)
Q Consensus 255 v~Q~~~~-~~~tv~~ni~~~~~~~~-~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAra 329 (1075)
|+|++.+ +..|++||+.++..... .. .....+++.++++.+++.++.++.+ .+||||||||++||||
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~--------~~LSgGerQRv~IArA 153 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV--------TSLSGGERQRVLLARA 153 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHH
Confidence 9999986 56799999988643210 00 1223456788999999998888765 6899999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhH-hhCCeEEEEcCC
Q 001446 330 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 387 (1075)
Q Consensus 330 l~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~-~~~d~i~~l~~~ 387 (1075)
|+++|++|||||||++||+.++..+++.+++ .|+|+|++||+++.+ +.||++++|+++
T Consensus 154 L~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADG 215 (402)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999988887754 488999999999998 579999999863
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=333.98 Aligned_cols=208 Identities=26% Similarity=0.313 Sum_probs=178.3
Q ss_pred CceEEeeeeeeCCC-ccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcE
Q 001446 835 DSISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGI 911 (1075)
Q Consensus 835 g~I~f~~V~~~yp~-~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i 911 (1075)
|.|+++|+++.|++ .+++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++...+ ..+.++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 46899999999985 357999999999999999999999999999999999999999999999999887642 346679
Q ss_pred EEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccc
Q 001446 912 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWE 990 (1075)
Q Consensus 912 ~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g 990 (1075)
+|+||+|.+|++|+++||.+.... ...++.++++.+++.+.+..++.|+++.. .+.
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~-----------------------~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~ 137 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEY-----------------------SDEELWQALERVGLKEFVESLPGGLDTVVEEGG 137 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCC-----------------------CHHHHHHHHHHhCcHHHHHhcccccccccccCC
Confidence 999999999999999999742111 12334556677777777777778888875 366
Q ss_pred cCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 991 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 991 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
..||+|||||++|||||+++|+++||||||++||..+...+.+.+++ .+.|+|+++|+++.+...|+++.|.+|.
T Consensus 138 ~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~ 214 (221)
T cd03244 138 ENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGR 214 (221)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCe
Confidence 88999999999999999999999999999999999999888877754 4789999999999888899999997654
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=336.58 Aligned_cols=196 Identities=26% Similarity=0.362 Sum_probs=165.8
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc-----cccccEEEEc
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-----DLNKEIFYVP 256 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~-----~~~~~i~~v~ 256 (1075)
++++|+++.|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|+|
T Consensus 2 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 2 LEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred EEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 78999999996 46799999999999999999999999999999999999999999999998541 1235799999
Q ss_pred CCCCC-CcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCC
Q 001446 257 QRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 335 (1075)
Q Consensus 257 Q~~~~-~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~ 335 (1075)
|++.+ +..|+++|+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+.+|+
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrl~laral~~~p~ 152 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKV--------RELNGGHRRRVEIARALLHRPA 152 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCCh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99977 45799999986532111111112345678899999987776655 6899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 336 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 336 illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+..||++++|++
T Consensus 153 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~ 207 (236)
T TIGR03864 153 LLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHR 207 (236)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeC
Confidence 9999999999999999999887753 37899999999999888999999985
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=343.16 Aligned_cols=199 Identities=26% Similarity=0.383 Sum_probs=169.8
Q ss_pred ccEEEEeEEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccE
Q 001446 180 NYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 252 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~-~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i 252 (1075)
..++++|+++.|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.+
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 46999999999963 5679999999999999999999999999999999999999999999999864 1345679
Q ss_pred EEEcCCC--CCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHH
Q 001446 253 FYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 330 (1075)
Q Consensus 253 ~~v~Q~~--~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral 330 (1075)
+|+||+| .++..|++||+.++.............++.++++.+++.+..++.+ .+||||||||++|||||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral 157 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP--------QNLSGGQKQRVAIASVL 157 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc--------ccCCHHHHHHHHHHHHH
Confidence 9999998 4556799999987532211111112235678899999998888876 68999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CCeEEEEecChhhHhhCCeEEEEcC
Q 001446 331 YHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 331 ~~~p~illLDEpts~LD~~~~~~i~~~l~~---~-~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
+.+|+++||||||++||+.+.+.+++.+++ . ++|+|++||+++.+..||++++|++
T Consensus 158 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~ 217 (271)
T PRK13632 158 ALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSE 217 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEEC
Confidence 999999999999999999999999888764 2 4899999999998888999999986
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=336.50 Aligned_cols=197 Identities=29% Similarity=0.394 Sum_probs=167.4
Q ss_pred EEEEeEEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc---------ccc
Q 001446 182 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLN 249 (1075)
Q Consensus 182 i~~~~v~~~~~~~---~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~ 249 (1075)
++++|+++.|++. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999643 2899999999999999999999999999999999999999999999998641 124
Q ss_pred ccEEEEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHH
Q 001446 250 KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 328 (1075)
Q Consensus 250 ~~i~~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAr 328 (1075)
+.++|+||+|.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~ 153 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP--------AQLSGGQKQRVGIAR 153 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh--------hhCCHHHHHHHHHHH
Confidence 67999999998886 599999987532111111112345778899999988877766 689999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 329 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 329 al~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
||+.+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+. .+|++++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~ 216 (233)
T cd03258 154 ALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEK 216 (233)
T ss_pred HHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999887753 3889999999999875 6999999976
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=331.90 Aligned_cols=199 Identities=24% Similarity=0.377 Sum_probs=169.2
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc------cccccEE
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEIF 253 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~~~~i~ 253 (1075)
..|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ..++.++
T Consensus 6 ~~i~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 6 PLLQLQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred ceEEEeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 3699999999986 46799999999999999999999999999999999999999999999998531 2356799
Q ss_pred EEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCCh-hHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcC
Q 001446 254 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 332 (1075)
Q Consensus 254 ~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~ 332 (1075)
|+||++.++..|++||+.++...... ....+++.++++.+++. ...++.+ .+||||||||++|||||++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQ--QPDPAIFLDDLERFALPDTILTKNI--------AELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCC--ChHHHHHHHHHHHcCCChHHhcCCc--------ccCCHHHHHHHHHHHHHhc
Confidence 99999998888999999874321111 11234567899999995 4556554 6899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHhhCCeEEEEcCCCc
Q 001446 333 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGEGE 389 (1075)
Q Consensus 333 ~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~~~d~i~~l~~~g~ 389 (1075)
+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+..||++++|+++++
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~ 215 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAG 215 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccc
Confidence 9999999999999999999998887754 37899999999999888999999976543
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=333.82 Aligned_cols=199 Identities=26% Similarity=0.415 Sum_probs=168.7
Q ss_pred EEEEeEEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEE
Q 001446 182 IEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 254 (1075)
Q Consensus 182 i~~~~v~~~~~~-~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 254 (1075)
++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 468999999964 3579999999999999999999999999999999999999999999999864 123567999
Q ss_pred EcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcc---cCCCCCCChhHHHHHHHHHHHc
Q 001446 255 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE---INWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 255 v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---~~~g~~LSgGqkqRl~lAral~ 331 (1075)
+||+++++..|++||+.++... .....+.+.++..++.+.++.+|.+.. .....+|||||||||+||||++
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~------~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 154 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPG------MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALI 154 (237)
T ss_pred EcCCchhccchHHHHhhccCCC------CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9999998888999999875421 123345566677777777776653322 1245789999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
.+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+..||+++++++
T Consensus 155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~ 211 (237)
T cd03252 155 HNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEK 211 (237)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999988865 37899999999999988999999986
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=315.93 Aligned_cols=166 Identities=52% Similarity=0.955 Sum_probs=152.2
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEcC
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 916 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~VpQ 916 (1075)
|+++|++++|++.+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|. .+++|+||
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---------~~i~~~~q 71 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---------EDLLFLPQ 71 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---------ceEEEECC
Confidence 578999999976667999999999999999999999999999999999999999999999874 56999999
Q ss_pred CCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCChh
Q 001446 917 RPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLG 996 (1075)
Q Consensus 917 dP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSgG 996 (1075)
+|.++++|+++|+.++. ...||+|
T Consensus 72 ~~~~~~~tv~~nl~~~~--------------------------------------------------------~~~LS~G 95 (166)
T cd03223 72 RPYLPLGTLREQLIYPW--------------------------------------------------------DDVLSGG 95 (166)
T ss_pred CCccccccHHHHhhccC--------------------------------------------------------CCCCCHH
Confidence 99999999999997420 1248999
Q ss_pred HHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHhcCceEEEecCCCCchhhccceEEEEcCCcce
Q 001446 997 EQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNW 1068 (1075)
Q Consensus 997 QrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~~~~TvI~IaHRls~i~~~~~~l~l~~g~g~~ 1068 (1075)
||||++||||++++|+++||||||++||.++...+.+.+++.++|+|+|+|+++...+.|+++.+ +++|.|
T Consensus 96 ~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~~~d~i~~l-~~~~~~ 166 (166)
T cd03223 96 EQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWKFHDRVLDL-DGEGGW 166 (166)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHhhCCEEEEE-cCCCCC
Confidence 99999999999999999999999999999999999888876689999999999999999999999 788887
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=331.48 Aligned_cols=196 Identities=27% Similarity=0.358 Sum_probs=166.8
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc--------cccccEE
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEIF 253 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~--------~~~~~i~ 253 (1075)
++++|+++.|++ +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 468999999964 6799999999999999999999999999999999999999999999998531 2356799
Q ss_pred EEcCCCCCCc-CCHHHHhcCCCCC-CcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 254 YVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 254 ~v~Q~~~~~~-~tv~~ni~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
|+||+|.++. .|++||+.++... .........+++.++++.+++.+..++.+ .+||||||||++||||++
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~ 151 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP--------AQLSGGQQQRVAIARALA 151 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc--------cccCHHHHHHHHHHHHHh
Confidence 9999998876 6999999875321 11111112345678899999988888776 689999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~ 210 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDD 210 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999888764 4789999999999885 6999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=358.60 Aligned_cols=189 Identities=21% Similarity=0.335 Sum_probs=149.2
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC---CccEEEeCCcC-cc--ccccEEEEcCCCCC-CcCCHH
Q 001446 195 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL---VSGHIAKPGVG-SD--LNKEIFYVPQRPYT-AVGTLR 267 (1075)
Q Consensus 195 ~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~---~~G~i~~~~~~-~~--~~~~i~~v~Q~~~~-~~~tv~ 267 (1075)
..+|+|++.-++||+.+.+.||.||||||||++|+|..+- ..|+|.++|.+ ++ -++.++|++|+... +..|||
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4799999999999999999999999999999999998753 35799999976 11 25679999998754 556999
Q ss_pred HHhcCCCCCCcc---cCcCCHHH-----HHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEEEE
Q 001446 268 DQLIYPLTSDQE---VEPLTHGG-----MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 339 (1075)
Q Consensus 268 ~ni~~~~~~~~~---~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~illL 339 (1075)
|-+.|....... ..+.++.+ .+.+++.+||++..+....+ +. ....|||||+||++|-+++.+|+++++
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGn-d~--~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGN-DM--VRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecc-cc--cccccCcccceeeeeeeeecCcceeee
Confidence 999875432211 11122222 34678899998877765422 22 246999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChh--hHhhCCeEEEEcC
Q 001446 340 DECTSAVTTDMEERFCAKVRA----MGTSCITISHRPA--LVAFHDVVLSLDG 386 (1075)
Q Consensus 340 DEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~--~~~~~d~i~~l~~ 386 (1075)
||+|.|||..+.-++.+.+++ .+.|.++.-|+.. .....|.|++|.+
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e 337 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE 337 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec
Confidence 999999999999999998875 3778888888654 4567899999976
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=334.31 Aligned_cols=198 Identities=24% Similarity=0.293 Sum_probs=165.9
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCC-----CCCccEEEeCCcCc--------cc
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW-----PLVSGHIAKPGVGS--------DL 248 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~-----~~~~G~i~~~~~~~--------~~ 248 (1075)
|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.+. .+
T Consensus 1 i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYG-DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 46899999996 457999999999999999999999999999999999999 99999999998641 13
Q ss_pred cccEEEEcCCCCCCcCCHHHHhcCCCCCCcccC-cCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHH
Q 001446 249 NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 327 (1075)
Q Consensus 249 ~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lA 327 (1075)
+++++|+||++.++..|++||+.++........ ...++++.++++.+++.+..++.+. ..+||||||||++||
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~~LSgG~~qrv~la 153 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH------ALGLSGGQQQRLCLA 153 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC------cccCCHHHHHHHHHH
Confidence 467999999998887799999987543211111 0123567788999999877665420 168999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 328 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 328 ral~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|||+.+|+++||||||++||+.++..+.+.+++. .+|+|++||+++.+. .||++++|++
T Consensus 154 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 215 (227)
T cd03260 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLN 215 (227)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999888652 379999999999865 7999999986
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=302.08 Aligned_cols=205 Identities=21% Similarity=0.246 Sum_probs=174.3
Q ss_pred cEEEEeEEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-ccccccEEEEcCC
Q 001446 181 YIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQR 258 (1075)
Q Consensus 181 ~i~~~~v~~~~~~-~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-~~~~~~i~~v~Q~ 258 (1075)
.+.+++++.+|++ .+.+|+|+|++|.+||.++++|||||||||||++++|+.+|..|+|.++|.. ..-...=|.|+|+
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 3567788888864 2359999999999999999999999999999999999999999999999853 1112346999999
Q ss_pred CCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEE
Q 001446 259 PYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 337 (1075)
Q Consensus 259 ~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~il 337 (1075)
+-+++ .++.||+.|+.......+....+...+.+..+||.+.-++++ -+||||||||+.|||||..+|++|
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i--------~qLSGGmrQRvGiARALa~eP~~L 154 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYI--------WQLSGGMRQRVGIARALAVEPQLL 154 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccce--------EeecchHHHHHHHHHHhhcCcceE
Confidence 97655 699999999987665544445566788999999999888776 589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH----hcCCeEEEEecChhhHh-hCCeEEEEcCCCcEEEe
Q 001446 338 ILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALVA-FHDVVLSLDGEGEWRVH 393 (1075)
Q Consensus 338 lLDEpts~LD~~~~~~i~~~l~----~~~~t~i~vtH~~~~~~-~~d~i~~l~~~g~~~~~ 393 (1075)
+||||+++||.-+++++.+.|- +.|+.+++|||+.+..- .++++++|++..+.+++
T Consensus 155 lLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~ 215 (259)
T COG4525 155 LLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVE 215 (259)
T ss_pred eecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeE
Confidence 9999999999999999888764 45999999999998764 68999999986665554
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=317.19 Aligned_cols=199 Identities=24% Similarity=0.276 Sum_probs=169.3
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEEE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYV 914 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~V 914 (1075)
|+|+||++.|. ...+++|+||+|++||.+.++|||||||||+++.+.|+++|++|+|.|||.||++++ .+|.+|+||
T Consensus 2 I~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 2 IEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred ceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 79999999986 567999999999999999999999999999999999999999999999999999985 478889999
Q ss_pred cCCCCCCC-cchhhhhcC-CCC-h-HHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchh--hhhhhccCCccccc
Q 001446 915 PQRPYTCL-GTLRDQIIY-PLS-R-EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY--LLEREEVGWDANLN 988 (1075)
Q Consensus 915 pQdP~Lf~-gTir~NL~~-p~~-~-~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~--~i~~~~~Gldt~~~ 988 (1075)
-|.--||+ -||.+||.. |.- . +.+ ..+..+.+.++.++|.. +..+-
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~-------------------~i~~r~~ELl~lvgL~p~~~~~Ry--------- 132 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKE-------------------RIKKRADELLDLVGLDPSEYADRY--------- 132 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHH-------------------HHHHHHHHHHHHhCCCHHHHhhcC---------
Confidence 99999996 699999975 321 0 111 11345667778888743 33333
Q ss_pred cccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHH----hcCceEEEecCCCC-chhhccceEEEEc
Q 001446 989 WEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPA-LIPFHSLELRLID 1063 (1075)
Q Consensus 989 ~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~----~~~~TvI~IaHRls-~i~~~~~~l~l~~ 1063 (1075)
...|||||+||+.+||||..+|+||++|||-||||+-+...+|+.+. +.++|+|.|+|..+ .++..|++.+|.+
T Consensus 133 -P~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~ 211 (309)
T COG1125 133 -PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDA 211 (309)
T ss_pred -chhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecC
Confidence 46799999999999999999999999999999999999888887553 35999999999995 8999999999965
Q ss_pred CC
Q 001446 1064 GE 1065 (1075)
Q Consensus 1064 g~ 1065 (1075)
|+
T Consensus 212 G~ 213 (309)
T COG1125 212 GE 213 (309)
T ss_pred Ce
Confidence 54
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=332.15 Aligned_cols=201 Identities=27% Similarity=0.426 Sum_probs=172.2
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 254 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 254 (1075)
.++++|+++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 48899999999754579999999999999999999999999999999999999999999999854 124567999
Q ss_pred EcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcc---cCCCCCCChhHHHHHHHHHHHc
Q 001446 255 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE---INWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 255 v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---~~~g~~LSgGqkqRl~lAral~ 331 (1075)
+||+++++..|++||+.++... ....++.++++.+++.++.+++|.+.. .....+||||||||++|||||+
T Consensus 82 ~~q~~~~~~~tv~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~ 155 (229)
T cd03254 82 VLQDTFLFSGTIMENIRLGRPN------ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAML 155 (229)
T ss_pred ecCCchhhhhHHHHHHhccCCC------CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9999998888999999876431 123456677888888888877653322 1235789999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 387 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~ 387 (1075)
.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+..||++++|+++
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g 213 (229)
T cd03254 156 RDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDG 213 (229)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCC
Confidence 99999999999999999999999888765 378999999999998889999999863
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=323.86 Aligned_cols=191 Identities=28% Similarity=0.441 Sum_probs=165.3
Q ss_pred EEEEeEEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCccccccEEEEcC
Q 001446 182 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 257 (1075)
Q Consensus 182 i~~~~v~~~~~~~----~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q 257 (1075)
++++||++.|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+|+||
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------~i~~~~q 73 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------SIAYVSQ 73 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------EEEEEec
Confidence 4689999999754 3799999999999999999999999999999999999999999999987 6999999
Q ss_pred CCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcc---cCCCCCCChhHHHHHHHHHHHcCCC
Q 001446 258 RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE---INWGDELSLGEQQRLGMARLFYHKP 334 (1075)
Q Consensus 258 ~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---~~~g~~LSgGqkqRl~lAral~~~p 334 (1075)
+|.+++.|++||+.++... ..++..++++.+++.+.++..|.+.. .....+||||||||++||||++.+|
T Consensus 74 ~~~l~~~t~~enl~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 74 EPWIQNGTIRENILFGKPF-------DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred CchhccCcHHHHhccCCCc-------CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999986432 23345677888888888877664322 2345789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHH-HH---hcCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 335 KFAILDECTSAVTTDMEERFCAK-VR---AMGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 335 ~illLDEpts~LD~~~~~~i~~~-l~---~~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
+++||||||++||+...+.+.+. ++ +.+.|+|++||+++.+..+|++++|++
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~ 202 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDN 202 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeC
Confidence 99999999999999999888774 33 247899999999999888999999975
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=340.09 Aligned_cols=209 Identities=23% Similarity=0.255 Sum_probs=178.3
Q ss_pred CCceEEeeeeeeCCCc-cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCc
Q 001446 834 QDSISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCG 910 (1075)
Q Consensus 834 ~g~I~f~~V~~~yp~~-~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~ 910 (1075)
.|.|+++|++++|++. .++|+|+||+|+|||.+||+|+||||||||+++|.|+++|.+|+|.+||.++...+ ..|.+
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 6789999999999763 57999999999999999999999999999999999999999999999999987653 34667
Q ss_pred EEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-cc
Q 001446 911 IFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NW 989 (1075)
Q Consensus 911 i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~ 989 (1075)
++|+||+|.+|++|+++|+.+.... .++.+.++++.+++...++..|.|+++.. .+
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~~-----------------------~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~ 153 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECKC-----------------------TDDRLWEALEIAQLKNMVKSLPGGLDAVVTEG 153 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCCC-----------------------CHHHHHHHHHHhCcHHHHhhcccccCcEeccC
Confidence 9999999999999999999732110 12233445556666667777777888865 45
Q ss_pred ccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 990 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 990 g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
+..||+|||||++||||++++|++|||||||++||+++...+.+.+++ .++|+|+++|+++.+...|+++.|.+|.
T Consensus 154 ~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~ 231 (257)
T cd03288 154 GENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGI 231 (257)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCE
Confidence 678999999999999999999999999999999999999888777654 4899999999999888899999997654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=337.93 Aligned_cols=196 Identities=28% Similarity=0.407 Sum_probs=165.5
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc------c-ccccEEE
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEIFY 254 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~-~~~~i~~ 254 (1075)
++++|+++.|+ ++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .+..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFG-GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEEC-CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 46899999996 46799999999999999999999999999999999999999999999998641 1 2356999
Q ss_pred EcCCCCCCcC-CHHHHhcCCCCCCccc----------CcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHH
Q 001446 255 VPQRPYTAVG-TLRDQLIYPLTSDQEV----------EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 323 (1075)
Q Consensus 255 v~Q~~~~~~~-tv~~ni~~~~~~~~~~----------~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqR 323 (1075)
+||++.++.. |++||+.++....... .....+++.++++.+++.+..++.+ .+||||||||
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qr 151 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA--------GELSYGQQRR 151 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh--------hhCCHHHHHH
Confidence 9999988775 9999998754221100 0112345678899999987777655 6899999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 324 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 324 l~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
++|||||+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .||+++++++
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999888754 5789999999999885 6999999986
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=329.02 Aligned_cols=199 Identities=31% Similarity=0.444 Sum_probs=173.5
Q ss_pred cEEEEeEEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEE
Q 001446 181 YIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~-~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~ 253 (1075)
.++++|+++.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 47899999999753 579999999999999999999999999999999999999999999999864 13456899
Q ss_pred EEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChhHHHHHHHHHHH
Q 001446 254 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 330 (1075)
Q Consensus 254 ~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqRl~lAral 330 (1075)
|+||+|.++..|++||+.+... ....++.++++.+++.+..+++|.+... .+...||||||||++|||||
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~-------~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGE-------YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred EECCCCccccchHHHHhCcCCC-------CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 9999999988999999975321 2345677888999999888876654332 35679999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 331 YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 331 ~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
+.+|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+..||++++|++
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~ 212 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDK 212 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEEC
Confidence 999999999999999999999999998875 37899999999999988999999986
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=347.66 Aligned_cols=197 Identities=25% Similarity=0.282 Sum_probs=166.6
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----ccccccEEEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 255 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v 255 (1075)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+
T Consensus 4 ~i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 4 AIDLVGVSKSYG-DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred EEEEEeEEEEeC-CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEE
Confidence 589999999996 4679999999999999999999999999999999999999999999999864 1235689999
Q ss_pred cCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCC
Q 001446 256 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 334 (1075)
Q Consensus 256 ~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p 334 (1075)
||++.++. .|++||+.+.............+++.++++.+++.+..++.+ .+||||||||++|||||+.+|
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~--------~~LSgG~~qrv~la~al~~~p 154 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRV--------ALLSGGMKRRLTLARALINDP 154 (303)
T ss_pred eccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCch--------hhCCHHHHHHHHHHHHHhcCC
Confidence 99998775 699999975321111101111234667888999988777765 689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 335 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 335 ~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 155 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~ 210 (303)
T TIGR01288 155 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLES 210 (303)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999888764 4899999999999885 6999999986
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=334.99 Aligned_cols=203 Identities=25% Similarity=0.312 Sum_probs=165.5
Q ss_pred eEEeeeeeeCCCc---cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc------CC
Q 001446 837 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA------GS 907 (1075)
Q Consensus 837 I~f~~V~~~yp~~---~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~------~~ 907 (1075)
|+++||++.|++. .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+ ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 5789999999753 57999999999999999999999999999999999999999999999999887643 13
Q ss_pred cCcEEEEcCCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccc
Q 001446 908 GCGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 986 (1075)
Q Consensus 908 r~~i~~VpQdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~ 986 (1075)
+.+++|+||+|.+|.+ |+++|+.++.... +. .....++.+.++++.++|.+.....
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~------- 137 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLA----------GV------PKKERRERAEELLERVGLGDRLNHY------- 137 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhc----------CC------CHHHHHHHHHHHHHHcCCchhhhcC-------
Confidence 4579999999999986 9999997632100 00 0000123456677777775443322
Q ss_pred cccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCchhhccceEEEE
Q 001446 987 LNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRLI 1062 (1075)
Q Consensus 987 ~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i~~~~~~l~l~ 1062 (1075)
...||||||||++||||++++|++|||||||++||+++...+.+.+++ .++|+|+|+|+++.+.+.|+++.|.
T Consensus 138 ---~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~ 214 (218)
T cd03255 138 ---PSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELR 214 (218)
T ss_pred ---hhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEee
Confidence 346999999999999999999999999999999999999888776643 3899999999999888999999997
Q ss_pred cCC
Q 001446 1063 DGE 1065 (1075)
Q Consensus 1063 ~g~ 1065 (1075)
+|.
T Consensus 215 ~G~ 217 (218)
T cd03255 215 DGK 217 (218)
T ss_pred CCc
Confidence 663
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=337.21 Aligned_cols=198 Identities=27% Similarity=0.378 Sum_probs=166.0
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEEE
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 255 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v 255 (1075)
++++|+++.|++.+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 4689999999643679999999999999999999999999999999999999999999999864 1235679999
Q ss_pred cCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChh--HHhcCCCCcccCCCCCCChhHHHHHHHHHHHcC
Q 001446 256 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY--LLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 332 (1075)
Q Consensus 256 ~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~ 332 (1075)
||+|.++. .|++||+.++............+++.++++.+++.. ..++.+ .+||||||||++|||||+.
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--------~~LS~G~~qrv~laral~~ 152 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYP--------HELSGGQQQRVGVARALAA 152 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcCh--------hhCCHHHHHHHHHHHHHhc
Confidence 99998875 699999987532211111112345778899999985 666655 6899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcCC
Q 001446 333 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 387 (1075)
Q Consensus 333 ~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~~ 387 (1075)
+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+ ..+|++++|+++
T Consensus 153 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G 212 (242)
T cd03295 153 DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNG 212 (242)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999887764 389999999999976 579999999863
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=333.37 Aligned_cols=194 Identities=29% Similarity=0.366 Sum_probs=167.7
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 254 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 254 (1075)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSF-GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 488999999986 4679999999999999999999999999999999999999999999999864 123567999
Q ss_pred EcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCCh-hHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCC
Q 001446 255 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 333 (1075)
Q Consensus 255 v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~ 333 (1075)
+||+|.++..|++||+.++..... ....++.++++.+++. +..++.+ .+||||||||++||||++.+
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDV--------KNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCCc--------ccCCHHHHHHHHHHHHHhcC
Confidence 999999888899999987543211 1234677889999996 5666655 68999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcCC
Q 001446 334 PKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 387 (1075)
Q Consensus 334 p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~~ 387 (1075)
|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 999999999999999999998887754 3899999999999875 69999999863
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=326.09 Aligned_cols=194 Identities=25% Similarity=0.356 Sum_probs=162.7
Q ss_pred eEEeeeeeeCCCc----cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEE
Q 001446 837 ISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIF 912 (1075)
Q Consensus 837 I~f~~V~~~yp~~----~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~ 912 (1075)
|+++||++.|++. +++|+|+||+|++||.++|+||+|||||||+++|.|+++|++|+|.+|| +++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-----------~i~ 69 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-----------SIA 69 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-----------EEE
Confidence 5799999999764 4799999999999999999999999999999999999999999999998 499
Q ss_pred EEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-cccc
Q 001446 913 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWED 991 (1075)
Q Consensus 913 ~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~ 991 (1075)
|+||+|.+|++|+++|+.++.... ++...++++.+++.+.+...|.|+++.. ....
T Consensus 70 ~~~q~~~l~~~t~~enl~~~~~~~-----------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 126 (204)
T cd03250 70 YVSQEPWIQNGTIRENILFGKPFD-----------------------EERYEKVIKACALEPDLEILPDGDLTEIGEKGI 126 (204)
T ss_pred EEecCchhccCcHHHHhccCCCcC-----------------------HHHHHHHHHHcCcHHHHHhccCcccceecCCCC
Confidence 999999999999999998753211 1122334445555555666667777754 3457
Q ss_pred CCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHH-HHH---hcCceEEEecCCCCchhhccceEEEEcC
Q 001446 992 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR-LAK---DMGITFVTSSQRPALIPFHSLELRLIDG 1064 (1075)
Q Consensus 992 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~-~~~---~~~~TvI~IaHRls~i~~~~~~l~l~~g 1064 (1075)
.||+|||||++||||++.+|+++||||||++||.++.+.+.+ +++ ..+.|+|+|+|+++.+...|+++.|.+|
T Consensus 127 ~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G 203 (204)
T cd03250 127 NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203 (204)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCC
Confidence 799999999999999999999999999999999998776654 333 2479999999999988889999999766
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=327.82 Aligned_cols=194 Identities=23% Similarity=0.328 Sum_probs=164.2
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC----ccccccEEEEcC
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 257 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~----~~~~~~i~~v~Q 257 (1075)
++++|+++.|++ +. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 i~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 1 VRLDKIRFSYGE-QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred CEEEeEEEEeCC-Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 468999999863 33 39999999999999999999999999999999999999999999864 112457999999
Q ss_pred CCCCCcC-CHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCE
Q 001446 258 RPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 336 (1075)
Q Consensus 258 ~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~i 336 (1075)
+|.++.. |++||+.++...........++++.++++.+++.+..++.| .+||||||||++||||++.+|++
T Consensus 78 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP--------GELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred ccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc--------ccCCHHHHHHHHHHHHHhcCCCE
Confidence 9988765 99999987643111111123456788999999998888876 68999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 337 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 337 llLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
+||||||++||+.++..+.+.+++ .++|+|++||+++.+. .||++++|++
T Consensus 150 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 204 (211)
T cd03298 150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDN 204 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEEC
Confidence 999999999999999999887753 3889999999999885 6999999986
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=335.30 Aligned_cols=196 Identities=22% Similarity=0.287 Sum_probs=165.0
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc------c-ccccEEE
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEIFY 254 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~-~~~~i~~ 254 (1075)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeC-CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 46899999996 46799999999999999999999999999999999999999999999998641 1 2356999
Q ss_pred EcCCCCCCcC-CHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCC
Q 001446 255 VPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 333 (1075)
Q Consensus 255 v~Q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~ 333 (1075)
+||++.++.. |++||+.++.............++.++++.+++.+..++.+ .+||||||||++|||||+.+
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKA--------SSLSGGERRRVEIARALATN 151 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHHHHHhcC
Confidence 9999988775 99999987532111111112345678899999988777765 68999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 334 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 334 p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+ ..||++++|++
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 208 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYE 208 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999998887754 488999999999765 57999999986
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=328.11 Aligned_cols=200 Identities=31% Similarity=0.504 Sum_probs=171.7
Q ss_pred cEEEEeEEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc------cccccEE
Q 001446 181 YIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~-~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~~~~i~ 253 (1075)
.++++|+++.|++. +++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|.+. ..++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 47899999999643 5799999999999999999999999999999999999999999999998641 2345799
Q ss_pred EEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChhHHHHHHHHHHH
Q 001446 254 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 330 (1075)
Q Consensus 254 ~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqRl~lAral 330 (1075)
|+||+++++..|++||+.++... ....++.++++.+++.+..++.|.+..+ ....+||||||||++||||+
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al 155 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPL------ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL 155 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCC------CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH
Confidence 99999998888999999875321 1244567888999999888877643221 23468999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChhhHhhCCeEEEEcC
Q 001446 331 YHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 331 ~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
+.+|+++||||||++||+.+...+.+.+++. ++|+|++||+++.+..||+++++++
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~ 213 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDS 213 (220)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999988753 4799999999998889999999986
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=348.82 Aligned_cols=198 Identities=25% Similarity=0.296 Sum_probs=168.3
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----ccccccEEE
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFY 254 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~ 254 (1075)
..|+++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|
T Consensus 40 ~~i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~ 118 (340)
T PRK13536 40 VAIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGV 118 (340)
T ss_pred eeEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEE
Confidence 4699999999996 4679999999999999999999999999999999999999999999999964 134578999
Q ss_pred EcCCCCCC-cCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCC
Q 001446 255 VPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 333 (1075)
Q Consensus 255 v~Q~~~~~-~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~ 333 (1075)
+||++.++ ..|++||+.+.............+++.++++.++|.+..++.+ .+||||||||++|||||+++
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~--------~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARV--------SDLSGGMKRRLTLARALIND 190 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCCh--------hhCCHHHHHHHHHHHHHhcC
Confidence 99999876 4699999975321111111112344667889999988777765 68999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 334 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 334 p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|+++||||||+|||+.++..+.+.+++ .|+|+|++||+++.+. .||+|++|++
T Consensus 191 P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~ 247 (340)
T PRK13536 191 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEA 247 (340)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999988765 4899999999999885 7999999986
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=336.24 Aligned_cols=207 Identities=19% Similarity=0.263 Sum_probs=169.9
Q ss_pred eEEeeeeeeCCC-ccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEE
Q 001446 837 ISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFY 913 (1075)
Q Consensus 837 I~f~~V~~~yp~-~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~ 913 (1075)
|+++||++.|++ ..++|+|+||+|++||.++|+|+||||||||+++|.|+++|.+|+|.++|.++...+ ..|.+++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 578999999975 467999999999999999999999999999999999999999999999999887542 34567999
Q ss_pred EcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccC
Q 001446 914 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDI 992 (1075)
Q Consensus 914 VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~ 992 (1075)
+||+|.+|+.|+++||.++..... ...+.+.++..++.++++..|.|+++.. ....+
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~----------------------~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 138 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMS----------------------MERVIEAAKLAGAHDFISELPEGYDTIVGEQGAG 138 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCC----------------------HHHHHHHHHHcCcHHHHHhCcccccchhhcCCCc
Confidence 999999999999999986432100 1112223334444555555556666543 24578
Q ss_pred CChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
||||||||++||||++++|++|||||||++||..+...+.+.+++ .++|+|+++|+++.+...|+++.|.+|.
T Consensus 139 LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~ 213 (237)
T cd03252 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGR 213 (237)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999888877654 4899999999999888899999997664
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=341.31 Aligned_cols=198 Identities=25% Similarity=0.332 Sum_probs=168.6
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 254 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 254 (1075)
.++++|+++.|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 48899999999755679999999999999999999999999999999999999999999999864 123467999
Q ss_pred EcCCCC--CCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcC
Q 001446 255 VPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 332 (1075)
Q Consensus 255 v~Q~~~--~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~ 332 (1075)
+||+|. ++..|+.||+.++............+++.++++.+++.+..++.+ ..||||||||++|||||+.
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP--------HHLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc--------ccCCHHHHHHHHHHHHHHc
Confidence 999983 566799999987532111111112345678999999998888876 6899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 333 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 333 ~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+ ..||++++|++
T Consensus 155 ~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~ 213 (277)
T PRK13652 155 EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDK 213 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999998887753 389999999999988 57999999986
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=348.82 Aligned_cols=202 Identities=19% Similarity=0.213 Sum_probs=164.8
Q ss_pred CceEEeeeeeeCCCc----cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc------
Q 001446 835 DSISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE------ 904 (1075)
Q Consensus 835 g~I~f~~V~~~yp~~----~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~------ 904 (1075)
..|+++||+|.|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 358999999999742 4699999999999999999999999999999999999999999999999887542
Q ss_pred ------------cCCcCcEEEEcCCC--CCCCcchhhhhcCCCC---hHHHHHHHhhhcCCCcccccccccchHHHHHHH
Q 001446 905 ------------AGSGCGIFYVPQRP--YTCLGTLRDQIIYPLS---REEAELRALKLHGKGEKLVDTTNILDSYLKTIL 967 (1075)
Q Consensus 905 ------------~~~r~~i~~VpQdP--~Lf~gTir~NL~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l 967 (1075)
..+|.+++||+|+| .+|++|+++||.++.. .+.+. ....+.+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~-------------------~~~~~~~~l 160 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSE-------------------AKKLAKFYL 160 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHH-------------------HHHHHHHHH
Confidence 13466799999999 7999999999986421 01100 012334566
Q ss_pred HhCCch-hhhhhhccCCccccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEE
Q 001446 968 EGVRLS-YLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFV 1043 (1075)
Q Consensus 968 ~~~~L~-~~i~~~~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI 1043 (1075)
+.++|. .... ....+||||||||+||||||+++|+|||||||||+||..+...+.+.+++ .++|+|
T Consensus 161 ~~~gL~~~~~~----------~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~Tii 230 (320)
T PRK13631 161 NKMGLDDSYLE----------RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVF 230 (320)
T ss_pred HHcCCChhHhc----------CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 666663 2221 12467999999999999999999999999999999999999888777643 589999
Q ss_pred EecCCCCch-hhccceEEEEcCC
Q 001446 1044 TSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 1044 ~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
+|+|+++.+ ++.|++++|.+|.
T Consensus 231 ivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 231 VITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred EEecCHHHHHHhCCEEEEEECCE
Confidence 999999865 7899999997765
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=294.69 Aligned_cols=185 Identities=27% Similarity=0.408 Sum_probs=161.2
Q ss_pred CCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEEEcCCCCCCcCCH
Q 001446 193 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTL 266 (1075)
Q Consensus 193 ~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v~Q~~~~~~~tv 266 (1075)
++.++|+++||++.+||+++|+||||||||||+|+++-+.+|++|++++.|++ ..+|.+|+||.|.|.+|.+||
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 45789999999999999999999999999999999999999999999999975 346889999999999999999
Q ss_pred HHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCC
Q 001446 267 RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 346 (1075)
Q Consensus 267 ~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~illLDEpts~L 346 (1075)
.||+.||...... ..+.....+.++++++.+..-..+ ..+||||||||+||+|-|.--|+||+||||||+|
T Consensus 94 eDNlifP~~~r~r--r~dr~aa~~llar~~l~~~~L~k~-------it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 94 EDNLIFPWQIRNR--RPDRAAALDLLARFALPDSILTKN-------ITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hhccccchHHhcc--CCChHHHHHHHHHcCCchhhhcch-------hhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 9999998654332 346667788999999976543322 2689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHH----HhcCCeEEEEecChhh-HhhCCeEEEEcC
Q 001446 347 TTDMEERFCAKV----RAMGTSCITISHRPAL-VAFHDVVLSLDG 386 (1075)
Q Consensus 347 D~~~~~~i~~~l----~~~~~t~i~vtH~~~~-~~~~d~i~~l~~ 386 (1075)
|+.+.+.+-+.+ ++.+..++.||||.+. ++++|+++.+..
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~ 209 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQP 209 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEecc
Confidence 999988765544 5678999999999987 789999998865
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=332.04 Aligned_cols=197 Identities=31% Similarity=0.428 Sum_probs=161.6
Q ss_pred EEEEeEEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc---------ccc
Q 001446 182 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLN 249 (1075)
Q Consensus 182 i~~~~v~~~~~~~---~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~ 249 (1075)
++++||++.|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 7899999999643 2799999999999999999999999999999999999999999999998641 234
Q ss_pred ccEEEEcCCCC--CC-cCCHHHHhcCCCCCCcccC-cCCHHH-HHHHHHHcCCh-hHHhcCCCCcccCCCCCCChhHHHH
Q 001446 250 KEIFYVPQRPY--TA-VGTLRDQLIYPLTSDQEVE-PLTHGG-MVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 323 (1075)
Q Consensus 250 ~~i~~v~Q~~~--~~-~~tv~~ni~~~~~~~~~~~-~~~~~~-~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqkqR 323 (1075)
+.++|+||+|. ++ ..|+++|+.++........ ...... ..++++.+++. ...++.+ .+||||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~~qr 153 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYP--------HELSGGQRQR 153 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCc--------hhcCHHHHHH
Confidence 67999999993 43 4699999976422111000 011112 24678888885 5666655 6899999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 324 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 324 l~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~-~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
++|||||+.+|+++||||||++||+.+++.+.+.+++ . |+|+|++||+++.+. .||++++|++
T Consensus 154 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 221 (228)
T cd03257 154 VAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYA 221 (228)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeC
Confidence 9999999999999999999999999999999888754 2 789999999999886 7999999986
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=343.22 Aligned_cols=198 Identities=26% Similarity=0.352 Sum_probs=166.2
Q ss_pred cEEEEeEEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc----------
Q 001446 181 YIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------- 246 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~----~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------- 246 (1075)
.++++|+++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 37899999999632 4699999999999999999999999999999999999999999999999641
Q ss_pred cccccEEEEcCCC--CCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCCh-hHHhcCCCCcccCCCCCCChhHHHH
Q 001446 247 DLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 323 (1075)
Q Consensus 247 ~~~~~i~~v~Q~~--~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqkqR 323 (1075)
..++.++|+||+| .++..|++||+.++............+++.++++.++|. ++.++.+ .+||||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~~LSgGq~qr 153 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSP--------FELSGGQMRR 153 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCc--------ccCCHHHHHH
Confidence 1245799999998 466689999998753211111111234567889999997 5667665 6899999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 324 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 324 l~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
++|||||+.+|++|||||||++||+.+...+.+.+++ .|+|+|++||+++.+ ..||++++|++
T Consensus 154 l~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~ 220 (287)
T PRK13641 154 VAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEH 220 (287)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999998887764 489999999999987 57999999986
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=326.78 Aligned_cols=201 Identities=27% Similarity=0.355 Sum_probs=171.8
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcc---ccCCcCcEE
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE---EAGSGCGIF 912 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~---~~~~r~~i~ 912 (1075)
.|+++|++|+|+++.++|+|+||+|++||.++|+|+||||||||+++|.|++.|++|.|.+||.+++. ...+|++++
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 47899999999887889999999999999999999999999999999999999999999999999873 356788899
Q ss_pred EEcCCC--CCCCcchhhhhcCCCCh---HHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc
Q 001446 913 YVPQRP--YTCLGTLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 987 (1075)
Q Consensus 913 ~VpQdP--~Lf~gTir~NL~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 987 (1075)
+|.|+| .+|..||.+.+.|+... ..++ .+..+.++++.+++.++.++.
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e-------------------~~~rv~~~l~~vgl~~~~~r~-------- 135 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREE-------------------IEERVAEALELVGLEELLDRP-------- 135 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHH-------------------HHHHHHHHHHHcCchhhccCC--------
Confidence 999999 79999999999984321 1111 134566788888886654443
Q ss_pred ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCC-chhhccceEEEE
Q 001446 988 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPA-LIPFHSLELRLI 1062 (1075)
Q Consensus 988 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls-~i~~~~~~l~l~ 1062 (1075)
..+||||||||+|||.+|..+|+|||||||||+||....+.+.+.+++ .+.|+|+|+|++. ...+.|+++++.
T Consensus 136 --p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 136 --PFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred --ccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 356999999999999999999999999999999999998877766543 3689999999997 556799999998
Q ss_pred cCC
Q 001446 1063 DGE 1065 (1075)
Q Consensus 1063 ~g~ 1065 (1075)
+|.
T Consensus 214 ~G~ 216 (235)
T COG1122 214 DGK 216 (235)
T ss_pred CCE
Confidence 875
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-38 Score=331.43 Aligned_cols=202 Identities=25% Similarity=0.313 Sum_probs=164.4
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEcC
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 916 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~VpQ 916 (1075)
|+++||++.|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++...+..+.+++||||
T Consensus 1 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYGS-VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeCC-eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 578999999965 5799999999999999999999999999999999999999999999999998765444567999999
Q ss_pred CCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCCh
Q 001446 917 RPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 995 (1075)
Q Consensus 917 dP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 995 (1075)
+|.+|. .|+++|+.++.... +. .....++.+.++++.+++.+..... ...|||
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LSg 133 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLR----------GV------PKAEIRARVRELLELVGLEGLLNRY----------PHELSG 133 (213)
T ss_pred chhhccCCcHHHHHHhHHHHc----------CC------CHHHHHHHHHHHHHHcCChhhhhcC----------hhhCCH
Confidence 999886 59999997532100 00 0000123456677777775443322 246999
Q ss_pred hHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCc-hhhccceEEEEcCC
Q 001446 996 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPAL-IPFHSLELRLIDGE 1065 (1075)
Q Consensus 996 GQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~-i~~~~~~l~l~~g~ 1065 (1075)
|||||++|||||+++|++|||||||++||.++...+.+.+++ .++|+|+|+|+++. .++.|+++.|.+|.
T Consensus 134 G~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~ 208 (213)
T cd03259 134 GQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGR 208 (213)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999888776643 38999999999985 57899999997664
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=340.74 Aligned_cols=198 Identities=22% Similarity=0.303 Sum_probs=169.9
Q ss_pred cEEEEeEEEEcCC-----CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc-------cc
Q 001446 181 YIEFSGVKVVTPT-----GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DL 248 (1075)
Q Consensus 181 ~i~~~~v~~~~~~-----~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------~~ 248 (1075)
.++++|+++.|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 6899999999974 25799999999999999999999999999999999999999999999998541 23
Q ss_pred cccEEEEcCCCC--CCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHH
Q 001446 249 NKEIFYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 326 (1075)
Q Consensus 249 ~~~i~~v~Q~~~--~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~l 326 (1075)
++.++|+||+|. ++..|+.+|+.++...........++++.++++.++|.++.++.+ .+||||||||++|
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LS~G~~qrv~l 155 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP--------HLLSGGQKQRVAI 155 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc--------ccCCHHHHHHHHH
Confidence 567999999984 555689999988643211111122356778999999999888877 6899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 327 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 327 Aral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
||||+.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+..||++++|++
T Consensus 156 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~ 219 (280)
T PRK13633 156 AGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDS 219 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEEC
Confidence 9999999999999999999999999999887753 38999999999999888999999986
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=341.94 Aligned_cols=201 Identities=23% Similarity=0.332 Sum_probs=175.3
Q ss_pred CceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEE
Q 001446 835 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 914 (1075)
Q Consensus 835 g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~V 914 (1075)
..|+|+||+..|. +..+|+|+||+|++||.+.+.|||||||||++++|.||..|++|+|.+||.||..+...+++|++|
T Consensus 4 ~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 4 PALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred ceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence 4699999999997 678999999999999999999999999999999999999999999999999999997777789999
Q ss_pred cCCCCCCC-cchhhhhcCCCCh----HHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccccc
Q 001446 915 PQRPYTCL-GTLRDQIIYPLSR----EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 989 (1075)
Q Consensus 915 pQdP~Lf~-gTir~NL~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~ 989 (1075)
+|+.-||+ -||++|+.||... .+++ .+..+.++|+.++|.++-.+.
T Consensus 83 FQ~YALFPHltV~~NVafGLk~~~~~~~~~-------------------i~~rv~e~L~lV~L~~~~~R~---------- 133 (352)
T COG3842 83 FQSYALFPHMTVEENVAFGLKVRKKLKKAE-------------------IKARVEEALELVGLEGFADRK---------- 133 (352)
T ss_pred ecCcccCCCCcHHHHhhhhhhhcCCCCHHH-------------------HHHHHHHHHHHcCchhhhhhC----------
Confidence 99999997 6999999998751 1111 134567888899987766554
Q ss_pred ccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHH----HhcCceEEEecCCC-CchhhccceEEEEcC
Q 001446 990 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLA----KDMGITFVTSSQRP-ALIPFHSLELRLIDG 1064 (1075)
Q Consensus 990 g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~----~~~~~TvI~IaHRl-s~i~~~~~~l~l~~g 1064 (1075)
..+||||||||+||||||..+|++|+||||-||||......++..+ ++.|.|.|.|+|.- +-+...|++.+|.+|
T Consensus 134 p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G 213 (352)
T COG3842 134 PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDG 213 (352)
T ss_pred hhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCC
Confidence 3569999999999999999999999999999999999877666544 34699999999999 588999999999777
Q ss_pred C
Q 001446 1065 E 1065 (1075)
Q Consensus 1065 ~ 1065 (1075)
.
T Consensus 214 ~ 214 (352)
T COG3842 214 R 214 (352)
T ss_pred c
Confidence 5
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=333.48 Aligned_cols=209 Identities=23% Similarity=0.329 Sum_probs=175.2
Q ss_pred CceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEE
Q 001446 835 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIF 912 (1075)
Q Consensus 835 g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~ 912 (1075)
|.|+++|+++.|++.+++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++...+ ..|.+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 1 GEIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred CeEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 46899999999976567999999999999999999999999999999999999999999999999887642 3466799
Q ss_pred EEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-cccc
Q 001446 913 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWED 991 (1075)
Q Consensus 913 ~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~ 991 (1075)
|+||+|.+|.+|+++|+.++.... .+..+.++++.+++....+..|.|+++.. ....
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~----------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 138 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNA----------------------TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGG 138 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCC----------------------CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCC
Confidence 999999999999999998642210 11223344555566666666666777654 3456
Q ss_pred CCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 992 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 992 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
.||+|||||++|||||+++|++|||||||++||..+...+.+.++. .++|+|+|+|.++.+...|+++.|.+|.
T Consensus 139 ~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~ 214 (229)
T cd03254 139 NLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGK 214 (229)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCe
Confidence 8999999999999999999999999999999999999888777644 4799999999999888899999997776
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=330.16 Aligned_cols=209 Identities=26% Similarity=0.362 Sum_probs=176.2
Q ss_pred CceEEeeeeeeCCCc-cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcE
Q 001446 835 DSISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGI 911 (1075)
Q Consensus 835 g~I~f~~V~~~yp~~-~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i 911 (1075)
|+|+++|+++.|++. .++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|.++|.++...+ ..+.++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 468999999999753 57999999999999999999999999999999999999999999999999876542 235679
Q ss_pred EEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccc
Q 001446 912 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWE 990 (1075)
Q Consensus 912 ~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g 990 (1075)
+|+||+|.+|..|+++|+.++.... ....+.++++.+++.+..+..|.|+++.. ...
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~----------------------~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 138 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLA----------------------DDERILRAAELAGVTDFVNKHPNGLDLQIGERG 138 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCC----------------------CHHHHHHHHHHcCcHHHHHhccccccceecCCC
Confidence 9999999999999999997642110 11233455666777777777778888765 345
Q ss_pred cCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 991 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 991 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
..||||||||++||||++.+|++|||||||++||.++...+.+.+++ .++|+|+|+|+++...+.|+++.+.+|.
T Consensus 139 ~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~ 215 (220)
T cd03245 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGR 215 (220)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCe
Confidence 68999999999999999999999999999999999999988887754 2589999999999889999999997653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=328.28 Aligned_cols=196 Identities=22% Similarity=0.309 Sum_probs=161.6
Q ss_pred EEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEcCC
Q 001446 838 SFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQR 917 (1075)
Q Consensus 838 ~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~VpQd 917 (1075)
+++||+++|++..++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.. ...+.+++|+||+
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~i~~~~q~ 79 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA-KERRKSIGYVMQD 79 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh-HHhhcceEEEecC
Confidence 367899999753679999999999999999999999999999999999999999999999998764 2344579999999
Q ss_pred C--CCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCCh
Q 001446 918 P--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 995 (1075)
Q Consensus 918 P--~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 995 (1075)
| .+|..|+++|+.++..... ..+..+.++++.+++.+..... ...|||
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~--------------------~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 129 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELD--------------------AGNEQAETVLKDLDLYALKERH----------PLSLSG 129 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcC--------------------ccHHHHHHHHHHcCCchhcCCC----------chhCCH
Confidence 8 4678999999986421100 0123456777887775543332 246999
Q ss_pred hHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhccceEEEEcC
Q 001446 996 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDG 1064 (1075)
Q Consensus 996 GQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~~~l~l~~g 1064 (1075)
|||||++||||++++|++|||||||++||.++...+.+.+++ .++|+|+++|+++.+ ++.|+++.|.+|
T Consensus 130 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 202 (205)
T cd03226 130 GQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANG 202 (205)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999888777643 489999999999866 589999999765
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=328.74 Aligned_cols=192 Identities=25% Similarity=0.330 Sum_probs=162.8
Q ss_pred EEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc----------cccccEE
Q 001446 184 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKEIF 253 (1075)
Q Consensus 184 ~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~----------~~~~~i~ 253 (1075)
++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+- ..++.++
T Consensus 1 i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFG-DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEEC-CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 468899886 46799999999999999999999999999999999999999999999998641 1245799
Q ss_pred EEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcC
Q 001446 254 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 332 (1075)
Q Consensus 254 ~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~ 332 (1075)
|++|++.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||++
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI--------YELSGGEQQRVALARAILK 151 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCCh--------hhCCHHHHHHHHHHHHHHc
Confidence 9999998876 699999987432111111122356778999999988777765 6899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHhhCCeEEEE
Q 001446 333 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSL 384 (1075)
Q Consensus 333 ~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~~~d~i~~l 384 (1075)
+|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++....||++++|
T Consensus 152 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 152 DPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999888764 389999999999988889999864
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=339.01 Aligned_cols=198 Identities=25% Similarity=0.372 Sum_probs=167.1
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc---------cccc
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLNK 250 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~~ 250 (1075)
..|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 6 NLVDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred ceEEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4699999999985 46799999999999999999999999999999999999999999999998531 1245
Q ss_pred cEEEEcCCCCCCcC-CHHHHhcCCCCCCc-ccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHH
Q 001446 251 EIFYVPQRPYTAVG-TLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 328 (1075)
Q Consensus 251 ~i~~v~Q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAr 328 (1075)
+++|+||++.++.. |+.||+.++..... ........++.++++.+++.+..++.+ .+||||||||++|||
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGq~qrv~lar 156 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMP--------SELSGGMARRAALAR 156 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHHH
Confidence 79999999988775 99999986532110 001112245667899999988777766 689999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 329 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 329 al~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~ 219 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVAD 219 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEEC
Confidence 99999999999999999999999998887754 2789999999998875 6999999986
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=339.56 Aligned_cols=197 Identities=25% Similarity=0.364 Sum_probs=167.8
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc--------cccccEE
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEIF 253 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~--------~~~~~i~ 253 (1075)
++++|+++.|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.|+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 78999999997556799999999999999999999999999999999999999999999999541 1356799
Q ss_pred EEcCCC--CCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 254 YVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 254 ~v~Q~~--~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
|+||+| .++..|+.||+.++............+++.++++.+++.++.++.+ .+||||||||++|||||+
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~LS~Gq~qrv~laral~ 153 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPP--------HHLSGGQKKRVAIAGILA 153 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCCh--------hhCCHHHHHHHHHHHHHh
Confidence 999997 4667899999987532111111112345778999999988877766 689999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
.+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 154 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~ 212 (275)
T PRK13639 154 MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSD 212 (275)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999888764 4899999999999875 7999999986
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=330.01 Aligned_cols=199 Identities=30% Similarity=0.462 Sum_probs=170.2
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEEE
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 255 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v 255 (1075)
++++|+++.|++++++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 4689999999755679999999999999999999999999999999999999999999999854 1235679999
Q ss_pred cCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcc---cCCCCCCChhHHHHHHHHHHHcC
Q 001446 256 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE---INWGDELSLGEQQRLGMARLFYH 332 (1075)
Q Consensus 256 ~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---~~~g~~LSgGqkqRl~lAral~~ 332 (1075)
||+|+++..|++||+.++... .....+.+.++.+++.+..+.+|.+.. ..+..+||||||||++|||||+.
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~------~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~ 154 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPD------ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK 154 (236)
T ss_pred CCCChhhcchHHHHHhhcCCC------CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999886431 123345667778888887777654322 23457899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChhhHhhCCeEEEEcC
Q 001446 333 KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 333 ~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
+|+++||||||++||+.+...+.+.+++. |+|+|++||+.+.+..||++++|++
T Consensus 155 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~ 210 (236)
T cd03253 155 NPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKD 210 (236)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEEC
Confidence 99999999999999999999998887642 7899999999999988999999986
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=340.10 Aligned_cols=199 Identities=27% Similarity=0.388 Sum_probs=169.7
Q ss_pred ccEEEEeEEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCc---cEEEeCCcCc------ccc
Q 001446 180 NYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS---GHIAKPGVGS------DLN 249 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~-~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~---G~i~~~~~~~------~~~ 249 (1075)
..++++|+++.|++ .+++++++||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.+. ..+
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 46999999999964 3579999999999999999999999999999999999999988 8999999641 235
Q ss_pred ccEEEEcCCCC--CCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHH
Q 001446 250 KEIFYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 327 (1075)
Q Consensus 250 ~~i~~v~Q~~~--~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lA 327 (1075)
++++|+||+|. ++..|+.||+.++............+++.++++.++|.+..++.| .+||||||||++||
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~LS~G~~qrv~la 155 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP--------ANLSGGQKQRVAIA 155 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc--------ccCCHHHHHHHHHH
Confidence 67999999984 566899999987532211111112245778899999998888877 68999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 328 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 328 ral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
|||+.+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+..||++++|++
T Consensus 156 ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~ 218 (282)
T PRK13640 156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDD 218 (282)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999887754 37899999999999888999999975
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=329.26 Aligned_cols=202 Identities=23% Similarity=0.250 Sum_probs=163.7
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc-----CCcCcE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCGI 911 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~-----~~r~~i 911 (1075)
|+++||+++|++.+++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+ ..|.++
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999976567999999999999999999999999999999999999999999999999886542 235679
Q ss_pred EEEcCCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccc
Q 001446 912 FYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 990 (1075)
Q Consensus 912 ~~VpQdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 990 (1075)
+||||+|.+|.. |+++|+.++..... . .....++.+.++++.+++....... .
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~----------~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~ 134 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTG----------V------PPREIRKRVPAALELVGLSHKHRAL----------P 134 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcC----------C------CHHHHHHHHHHHHHHcCCHHHhhCC----------h
Confidence 999999999984 99999975421000 0 0001123456677777775443322 2
Q ss_pred cCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCchh-hccceEEEEcC
Q 001446 991 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIP-FHSLELRLIDG 1064 (1075)
Q Consensus 991 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i~-~~~~~l~l~~g 1064 (1075)
..||||||||++||||++++|+|+||||||++||.++...+.+.+++ .++|+|+|+|++..+. +.|+++.|.+|
T Consensus 135 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G 212 (214)
T cd03292 135 AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERG 212 (214)
T ss_pred hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 46999999999999999999999999999999999999888776643 4899999999998765 68999999765
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=339.75 Aligned_cols=197 Identities=23% Similarity=0.272 Sum_probs=165.5
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc--------cccccE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEI 252 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~--------~~~~~i 252 (1075)
+++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.+
T Consensus 1 ml~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRYQ-DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEcC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 378999999996 46799999999999999999999999999999999999999999999998641 234679
Q ss_pred EEEcCCCC--CCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHH
Q 001446 253 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 330 (1075)
Q Consensus 253 ~~v~Q~~~--~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral 330 (1075)
+|+||+|. ++..|+.+|+.++............+++.++++.+++.++.++.+ .+||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrl~laraL 151 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPI--------QCLSHGQKKRVAIAGAL 151 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCc--------hhCCHHHHHHHHHHHHH
Confidence 99999985 456789999987532111111112234667899999988777655 68999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 331 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 331 ~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+ ..||++++|++
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~ 211 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQ 211 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999888764 488999999999988 46999999986
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=333.30 Aligned_cols=197 Identities=28% Similarity=0.385 Sum_probs=166.9
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 254 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 254 (1075)
.++++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLG-GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 478999999996 4679999999999999999999999999999999999999999999999853 123467999
Q ss_pred EcCCCCC-CcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc--
Q 001446 255 VPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY-- 331 (1075)
Q Consensus 255 v~Q~~~~-~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~-- 331 (1075)
+||++.+ +..|++||+.++.............++.++++.+++.+..++.+ .+||||||||++|||||+
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGe~qrv~la~al~~~ 152 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDY--------PQLSGGEQQRVQLARVLAQL 152 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCc--------ccCCHHHHHHHHHHHHHhcc
Confidence 9999977 55799999987543211111112345778899999988777766 689999999999999999
Q ss_pred ----CCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 332 ----HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 332 ----~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
.+|+++||||||++||+.+...+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 153 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 216 (258)
T PRK13548 153 WEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQ 216 (258)
T ss_pred cccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEEC
Confidence 59999999999999999999988887653 4789999999999875 7999999985
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=329.60 Aligned_cols=194 Identities=22% Similarity=0.342 Sum_probs=162.5
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc------c-ccccEEE
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEIFY 254 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~-~~~~i~~ 254 (1075)
|+++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYG-KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecC-CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 46899999986 45799999999999999999999999999999999999999999999998541 1 2457999
Q ss_pred EcCCCCCCcC-CHHHHhcCCCCCCcccCcCCHHHHHHHHHHc-CChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcC
Q 001446 255 VPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNV-DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 332 (1075)
Q Consensus 255 v~Q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~ 332 (1075)
+||++.++.. |++||+.++..... ......++.++++.+ ++.+..++.+ .+||||||||++|||||+.
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~ 149 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLA--------GTLSGGEQQMLAIARALMS 149 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCch--------hhCCHHHHHHHHHHHHHhc
Confidence 9999988775 99999987643211 111233455677776 4666566544 6899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 333 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 333 ~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+ ..||++++|++
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 207 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLER 207 (222)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeC
Confidence 9999999999999999999999888764 478999999999986 56999999975
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=333.61 Aligned_cols=197 Identities=23% Similarity=0.259 Sum_probs=166.1
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCC-----ccEEEeCCcCc--------c
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVGS--------D 247 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~-----~G~i~~~~~~~--------~ 247 (1075)
+++++|+++.|+ +.++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+. .
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 1 AIEIENLNLFYG-EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred CEEEEEEEEEEC-CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 378999999996 457999999999999999999999999999999999999998 99999998641 1
Q ss_pred ccccEEEEcCCCCCCcCCHHHHhcCCCCCCcc-cCcCCHHHHHHHHHHcCCh----hHHhcCCCCcccCCCCCCChhHHH
Q 001446 248 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQQ 322 (1075)
Q Consensus 248 ~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~~~~~g~~LSgGqkq 322 (1075)
.++.++|+||++.++..|++||+.++...... ......+++.++++.+++. +..++.+ .+|||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgG~~q 151 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSA--------LGLSGGQQQ 151 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCc--------ccCCHHHHH
Confidence 34679999999988889999999875322110 0111234567889999997 5555554 689999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 323 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 323 Rl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+ ..||++++|++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYD 218 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999888764 258999999999977 46999999986
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=328.46 Aligned_cols=202 Identities=24% Similarity=0.323 Sum_probs=164.2
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc-----CCcCcE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCGI 911 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~-----~~r~~i 911 (1075)
|+++|+++.|+++.++|+|+||+|++||+++|+||||||||||+++|.|+++|.+|+|.++|.++...+ ..+.++
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 689999999965567999999999999999999999999999999999999999999999999987642 245679
Q ss_pred EEEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccc
Q 001446 912 FYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 990 (1075)
Q Consensus 912 ~~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 990 (1075)
+|+||+|.+|. .|+++|+.++... .+. .+...++.+.++++.+++.+..... .
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~----------~~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~ 135 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEV----------RGK------KEREIQRRVGAALRQVGLEHKADAF----------P 135 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHH----------cCC------CHHHHHHHHHHHHHHcCChhhhhCC----------h
Confidence 99999999986 6999999753100 000 0001134456677777775433222 2
Q ss_pred cCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCchh-hccceEEEEcC
Q 001446 991 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIP-FHSLELRLIDG 1064 (1075)
Q Consensus 991 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i~-~~~~~l~l~~g 1064 (1075)
..||||||||++|||||+++|++|||||||++||.++...+.+.+++ .++|+|+|+|+++.+. +.|+++.|.+|
T Consensus 136 ~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 136 EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCC
Confidence 46999999999999999999999999999999999999888777653 4899999999998654 78999999765
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=349.56 Aligned_cols=204 Identities=18% Similarity=0.262 Sum_probs=169.7
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEc
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~Vp 915 (1075)
.|+++||++.|++..++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++......+.+|+|||
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 38999999999655679999999999999999999999999999999999999999999999999987644456799999
Q ss_pred CCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCC
Q 001446 916 QRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 994 (1075)
Q Consensus 916 QdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 994 (1075)
|+|.||+ .|+++||.|+..... . .....+..+.++++.++|.++..+.| ..||
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~----------~------~~~~~~~~~~~~l~~~gL~~~~~~~~----------~~LS 136 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKIRG----------M------PKAEIEERVAEAARILELEPLLDRKP----------RELS 136 (356)
T ss_pred CCccccCCCCHHHHHHhHHhhcC----------C------CHHHHHHHHHHHHHHcCChhHhhCCh----------hhCC
Confidence 9999996 599999998642100 0 00001234567788888876655442 4699
Q ss_pred hhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHH----hcCceEEEecCCCC-chhhccceEEEEcCC
Q 001446 995 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 995 gGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~----~~~~TvI~IaHRls-~i~~~~~~l~l~~g~ 1065 (1075)
||||||+||||||+++|++||||||||+||..+...+.+.++ +.+.|+|.|+|.+. ...+.|+++.|.+|.
T Consensus 137 gGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~ 212 (356)
T PRK11650 137 GGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGV 212 (356)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999887766553 24899999999996 668899999997664
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=343.98 Aligned_cols=199 Identities=29% Similarity=0.386 Sum_probs=166.6
Q ss_pred ccEEEEeEEEEcCC------------CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc-
Q 001446 180 NYIEFSGVKVVTPT------------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS- 246 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~------------~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~- 246 (1075)
..++++|+++.|+. ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 46999999998863 24699999999999999999999999999999999999999999999999641
Q ss_pred --------cccccEEEEcCCCC--CC-cCCHHHHhcCCCCCC--cccCcCCHHHHHHHHHHcCCh-hHHhcCCCCcccCC
Q 001446 247 --------DLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSD--QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINW 312 (1075)
Q Consensus 247 --------~~~~~i~~v~Q~~~--~~-~~tv~~ni~~~~~~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~ 312 (1075)
.++++|+||||+|. ++ ..|+.+|+.++.... ........+++.++++.+++. +..+++|
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p------- 159 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP------- 159 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc-------
Confidence 13568999999983 44 479999997653211 011112234567889999994 5677777
Q ss_pred CCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 313 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 313 g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
.+|||||||||+|||||+.+|++||+||||++||..+...+.+.+++ .|.|+|+||||++.+. .||+|++|.+
T Consensus 160 -~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 160 -HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 68999999999999999999999999999999999999998887753 3899999999999986 6999999985
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=340.89 Aligned_cols=197 Identities=23% Similarity=0.304 Sum_probs=164.1
Q ss_pred EEEEeEEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc----------c
Q 001446 182 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------D 247 (1075)
Q Consensus 182 i~~~~v~~~~~~~----~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~----------~ 247 (1075)
++++|+++.|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 7899999999742 4699999999999999999999999999999999999999999999998531 1
Q ss_pred ccccEEEEcCCC--CCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCCh-hHHhcCCCCcccCCCCCCChhHHHHH
Q 001446 248 LNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRL 324 (1075)
Q Consensus 248 ~~~~i~~v~Q~~--~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqkqRl 324 (1075)
+++.|+|+||+| .++..|++||+.++............+.+.++++.+++. ...++.+ .+||||||||+
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~~qrv 154 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNP--------FELSGGQMRRV 154 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCc--------ccCCHHHHHHH
Confidence 346799999998 567789999998753211110111123456788889996 3555544 68999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 325 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 325 ~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
+|||||+.+|+++||||||++||+.+++.+.+.+++ .++|+|++||+++.+ ..||++++|++
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~ 220 (280)
T PRK13649 155 AIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEK 220 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999888764 488999999999987 47999999986
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=324.51 Aligned_cols=194 Identities=22% Similarity=0.321 Sum_probs=164.7
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC----ccccccEEEEcC
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 257 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~----~~~~~~i~~v~Q 257 (1075)
++++|+++.|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 ~~~~~l~~~~~~---~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 1 LALDKVRYEYEH---LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred CeEEeeeEEeCC---cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 368999999852 5689999999999999999999999999999999999999999999864 134567999999
Q ss_pred CCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCE
Q 001446 258 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 336 (1075)
Q Consensus 258 ~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~i 336 (1075)
+|.++. .|++||+.++.............++.++++.+++.+..++.| .+||||||||++||||++.+|++
T Consensus 78 ~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP--------EQLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred cCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc--------ccCCHHHHHHHHHHHHHhcCCCE
Confidence 998876 499999986532111011122456778999999998888877 68999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 337 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 337 llLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
+||||||++||+.+...+.+.+++ .+.|+|++||+.+.+. .+|++++|++
T Consensus 150 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~ 204 (213)
T TIGR01277 150 LLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQ 204 (213)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEEC
Confidence 999999999999999998887754 3789999999999875 6999999975
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=341.49 Aligned_cols=199 Identities=24% Similarity=0.257 Sum_probs=164.5
Q ss_pred ccEEEEeEEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC----------
Q 001446 180 NYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------- 245 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~----~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~---------- 245 (1075)
+.++++|+++.|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 469999999999653 259999999999999999999999999999999999999999999998853
Q ss_pred -ccccccEEEEcCCCC--CCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCCh-hHHhcCCCCcccCCCCCCChhHH
Q 001446 246 -SDLNKEIFYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 321 (1075)
Q Consensus 246 -~~~~~~i~~v~Q~~~--~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqk 321 (1075)
..+++.++|+||+|. ++..|++||+.++............+++.++++.+++. ++.++.+ .+||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~--------~~LS~Gq~ 156 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSP--------FELSGGQK 156 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCCh--------hhCCHHHH
Confidence 123567999999983 56679999998753211111111123456788888984 5666654 68999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 322 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 322 qRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
||++|||||+.+|++|||||||++||+.+++.+.+.+++ .|+|+|++||+++.+ ..||++++|++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~ 226 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHE 226 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999998887653 388999999999986 57999999986
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=348.52 Aligned_cols=183 Identities=26% Similarity=0.337 Sum_probs=157.1
Q ss_pred eeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc------c----ccccEEEEcCCCCCCc-C
Q 001446 196 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D----LNKEIFYVPQRPYTAV-G 264 (1075)
Q Consensus 196 ~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~----~~~~i~~v~Q~~~~~~-~ 264 (1075)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .+++++|+||++.++. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 489999999999999999999999999999999999999999999998641 1 1357999999998876 5
Q ss_pred CHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCC
Q 001446 265 TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 344 (1075)
Q Consensus 265 tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~illLDEpts 344 (1075)
|++||+.++............+++.++++.++|.+..++.| .+||||||||++|||||+.+|++|||||||+
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~--------~~LSgGq~QRv~LArAL~~~P~iLLLDEPts 193 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP--------DELSGGMRQRVGLARALAINPDILLMDEAFS 193 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc--------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 99999988643211111122356778999999998888887 6899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 345 AVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 345 ~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
+||+.+++.+.+.+++ .++|+|++||+++.+ ..||++++|++
T Consensus 194 ~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~ 240 (400)
T PRK10070 194 ALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQN 240 (400)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEEC
Confidence 9999999999887753 488999999999987 57999999986
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=337.28 Aligned_cols=199 Identities=26% Similarity=0.329 Sum_probs=168.5
Q ss_pred ccEEEEeEEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc------cccccE
Q 001446 180 NYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEI 252 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~-~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~~~~i 252 (1075)
+.++++|+++.|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.+
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 469999999999753 4699999999999999999999999999999999999999999999999641 245679
Q ss_pred EEEcCCCC--CCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHH
Q 001446 253 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 330 (1075)
Q Consensus 253 ~~v~Q~~~--~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral 330 (1075)
+|+||+|. ++..|+++|+.++............+++.++++.+++.++.++.+ .+||||||||++||||+
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral 157 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEP--------NALSGGQKQRVAIAGVL 157 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCc--------ccCCHHHHHHHHHHHHH
Confidence 99999985 455689999987643211111112345678899999988777765 68999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 331 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 331 ~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+..||++++|++
T Consensus 158 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~ 217 (269)
T PRK13648 158 ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNK 217 (269)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEEC
Confidence 999999999999999999999998887754 37899999999998878999999986
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=331.45 Aligned_cols=196 Identities=27% Similarity=0.392 Sum_probs=166.8
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc--------cccccEE
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEIF 253 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~--------~~~~~i~ 253 (1075)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.++
T Consensus 2 l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFG-PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEEC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 78999999986 46799999999999999999999999999999999999999999999998541 2356799
Q ss_pred EEcCCCCCCc-CCHHHHhcCCCCC-CcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 254 YVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 254 ~v~Q~~~~~~-~tv~~ni~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
|+||++.++. .|+++|+.++... .........+++.++++.+++.+..++.+ ..||||||||++||||++
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP--------SELSGGQQQRVAIARALA 152 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh--------hhcCHHHHHHHHHHHHHh
Confidence 9999998775 5999999875311 11111112345678899999988777766 689999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+. .||++++|++
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 211 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDK 211 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999887753 4899999999999885 6999999986
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=294.42 Aligned_cols=203 Identities=18% Similarity=0.224 Sum_probs=168.1
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEcC
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 916 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~VpQ 916 (1075)
|.+++|.|.|...+ -.++++|++||+|||+||||||||||++++.||..|.+|+|.|+|+|.......++-++++.|
T Consensus 2 l~L~~V~~~y~~~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQ 78 (231)
T COG3840 2 LALDDVRFSYGHLP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78 (231)
T ss_pred ccccceEEeeCcce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhh
Confidence 45778899886543 357899999999999999999999999999999999999999999999988666667999999
Q ss_pred CCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCCh
Q 001446 917 RPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 995 (1075)
Q Consensus 917 dP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 995 (1075)
|.-||. -||.+|+..+.+.. ++ +.....+.+..++..+||..+..++| ..|||
T Consensus 79 EnNLFaHLtV~qNigLGl~P~------Lk----------L~a~~r~~v~~aa~~vGl~~~~~RLP----------~~LSG 132 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPG------LK----------LNAEQREKVEAAAAQVGLAGFLKRLP----------GELSG 132 (231)
T ss_pred ccccchhhhhhhhhcccCCcc------cc----------cCHHHHHHHHHHHHHhChhhHhhhCc----------cccCc
Confidence 999997 59999998754320 00 00011344667788999988877775 45899
Q ss_pred hHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHH----HHHHhcCceEEEecCCCC-chhhccceEEEEcCCcce
Q 001446 996 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLY----RLAKDMGITFVTSSQRPA-LIPFHSLELRLIDGEGNW 1068 (1075)
Q Consensus 996 GQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~----~~~~~~~~TvI~IaHRls-~i~~~~~~l~l~~g~g~~ 1068 (1075)
|||||+|+||+|+|+-+||+||||-||||+.....|. ++..+++.|+++|+|.++ ..+..++++.+++|.=.|
T Consensus 133 GqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~ 210 (231)
T COG3840 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAA 210 (231)
T ss_pred hHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEe
Confidence 9999999999999999999999999999998766554 444568999999999995 778999999998886444
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=332.25 Aligned_cols=207 Identities=27% Similarity=0.355 Sum_probs=173.7
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEEE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYV 914 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~V 914 (1075)
|+++|+++.|++..++|+|+||+|++||.++|+||+|||||||+++|.|+++|.+|+|.+||.++...+ ..|..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 578999999976567999999999999999999999999999999999999999999999999887652 345679999
Q ss_pred cCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccCC
Q 001446 915 PQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDIL 993 (1075)
Q Consensus 915 pQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~L 993 (1075)
||+|.+|++|+++|+.++... ..+..+.+.++.+++.+.+..++.|+++.. .+...|
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~----------------------~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~L 138 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPD----------------------ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKL 138 (236)
T ss_pred CCCChhhcchHHHHHhhcCCC----------------------CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcC
Confidence 999999999999999865321 011223344455566666666667777765 356789
Q ss_pred ChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 994 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 994 SgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
|+|||||++|||||+++|++|||||||++||.++...+.+.+++ .+.|+|+|+|+++.+..+|+++.|.+|.
T Consensus 139 S~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~ 212 (236)
T cd03253 139 SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGR 212 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999888777643 3789999999999888899999997664
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=338.12 Aligned_cols=195 Identities=26% Similarity=0.315 Sum_probs=164.4
Q ss_pred EEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc------c----ccccE
Q 001446 183 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D----LNKEI 252 (1075)
Q Consensus 183 ~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~----~~~~i 252 (1075)
.++|+++.|. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .++++
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 5668888874 56799999999999999999999999999999999999999999999998541 1 13579
Q ss_pred EEEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 253 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 253 ~~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
+|+||++.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Gq~qrv~lAral~ 176 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP--------DELSGGMQQRVGLARALA 176 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc--------ccCCHHHHHHHHHHHHHh
Confidence 99999998875 699999987532111111112345778999999998888877 689999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+ ..||++++|++
T Consensus 177 ~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~ 236 (269)
T cd03294 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKD 236 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 99999999999999999999999887753 379999999999886 57999999985
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=333.56 Aligned_cols=198 Identities=27% Similarity=0.353 Sum_probs=168.2
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEE
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 253 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~ 253 (1075)
..++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++
T Consensus 10 ~~l~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 10 TTFALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred ceEEEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 4699999999996 4689999999999999999999999999999999999999999999999854 12356799
Q ss_pred EEcCCCCCCc-CCHHHHhcCCCCCCc----ccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHH
Q 001446 254 YVPQRPYTAV-GTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 328 (1075)
Q Consensus 254 ~v~Q~~~~~~-~tv~~ni~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAr 328 (1075)
|+||++.++. .|+.||+.++..... .......+++.++++.+++.+..++.+ .+||||||||++|||
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~lar 160 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV--------DSLSGGERQRAWIAM 160 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc--------ccCCHHHHHHHHHHH
Confidence 9999986655 599999987532110 001112346778999999988888776 689999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 329 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 329 al~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
||+.+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+ ..||++++|++
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~ 223 (265)
T PRK10575 161 LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRG 223 (265)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999988887753 379999999999987 57999999986
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=331.79 Aligned_cols=203 Identities=20% Similarity=0.243 Sum_probs=163.0
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc-----CCcCcE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCGI 911 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~-----~~r~~i 911 (1075)
|+++||++.|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++...+ ..|.++
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFGG-RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 578999999964 56999999999999999999999999999999999999999999999999886542 245679
Q ss_pred EEEcCCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccc
Q 001446 912 FYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 990 (1075)
Q Consensus 912 ~~VpQdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 990 (1075)
+||||+|.+|++ |+++|+.++..... +. .....++.+.++++.+++.+...+. .
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~---------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~ 134 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHT---------RL------SEEEIREIVLEKLEAVGLRGAEDLY----------P 134 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhcc---------CC------CHHHHHHHHHHHHHHcCCchhhcCC----------h
Confidence 999999999986 99999975311000 00 0000123455667777774433222 2
Q ss_pred cCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 991 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 991 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
..||||||||++|||||+++|+||||||||++||..+...+.+.+++ .++|+|+|+|+++.+ .+.|+++.|.+|.
T Consensus 135 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~ 214 (235)
T cd03261 135 AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGK 214 (235)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCe
Confidence 46999999999999999999999999999999999999888776643 389999999999855 5799999997654
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=336.98 Aligned_cols=198 Identities=23% Similarity=0.303 Sum_probs=168.3
Q ss_pred cEEEEeEEEEcCCC--CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccE
Q 001446 181 YIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 252 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~--~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i 252 (1075)
.++++|+++.|++. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 58999999999742 469999999999999999999999999999999999999999999999864 1245679
Q ss_pred EEEcCCCC--CCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHH
Q 001446 253 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 330 (1075)
Q Consensus 253 ~~v~Q~~~--~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral 330 (1075)
+|+||+|. ++..|+.||+.++............+++.++++.+++.++.++.+ ..||||||||++|||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~lAraL 155 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP--------ARLSGGQKQRVAVAGII 155 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCc--------ccCCHHHHHHHHHHHHH
Confidence 99999984 566799999987532111111111245678899999988887766 68999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 331 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 331 ~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
+.+|+++||||||++||+.+...+.+.+++ .|.|+|++||+++.+..||++++|++
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~ 215 (277)
T PRK13642 156 ALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKA 215 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 999999999999999999999999887753 38999999999999888999999986
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=333.38 Aligned_cols=211 Identities=23% Similarity=0.272 Sum_probs=165.8
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc-----CCcCcE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCGI 911 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~-----~~r~~i 911 (1075)
|+++||+++|+..+++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++...+ ..|.++
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 689999999973467999999999999999999999999999999999999999999999999887542 235679
Q ss_pred EEEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccc
Q 001446 912 FYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 990 (1075)
Q Consensus 912 ~~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 990 (1075)
+||||+|.+|. .|+++|+.++........... .+ ......++.+.++++.+++....... .
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~l~~~~l~~~~~~~----------~ 143 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSL--LG------RFSEEDKERALSALERVGLADKAYQR----------A 143 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhhh--hc------cccHHHHHHHHHHHHHcCcHhhhcCC----------c
Confidence 99999999886 599999976432100000000 00 00011134566777777775433221 3
Q ss_pred cCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 991 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 991 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
..||||||||++|||||+++|++|||||||++||.++...+.+.+++ .++|+|+|+|+++.+ ++.|+++.|.+|.
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~ 223 (243)
T TIGR02315 144 DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGE 223 (243)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 56999999999999999999999999999999999999887776643 379999999999876 7899999997664
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=322.06 Aligned_cols=197 Identities=18% Similarity=0.305 Sum_probs=165.7
Q ss_pred EEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc----------cccccE
Q 001446 183 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKEI 252 (1075)
Q Consensus 183 ~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~----------~~~~~i 252 (1075)
.+.|+.+.|+.+.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 4678899998667899999999999999999999999999999999999999999999998641 123579
Q ss_pred EEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChhHHHHHHHHHH
Q 001446 253 FYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARL 329 (1075)
Q Consensus 253 ~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqRl~lAra 329 (1075)
+|++|+|.++..|++||+.++... ...+..++++.+++.+..+..|.+..+ .....||||||||++||||
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lara 154 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSPF-------NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARA 154 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCcC-------CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHH
Confidence 999999998888999999876321 233456778888888777665543222 2357899999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHH--H---HHhcCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 330 FYHKPKFAILDECTSAVTTDMEERFCA--K---VRAMGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 330 l~~~p~illLDEpts~LD~~~~~~i~~--~---l~~~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
++.+|+++||||||++||+.+.+.+++ . +++.|.|+|++||+.+.+..+|++++|++
T Consensus 155 l~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~ 216 (218)
T cd03290 155 LYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKD 216 (218)
T ss_pred HhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecC
Confidence 999999999999999999999987776 2 33458999999999999888999999975
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=327.15 Aligned_cols=200 Identities=26% Similarity=0.410 Sum_probs=168.7
Q ss_pred EEEEeEEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEE
Q 001446 182 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 254 (1075)
Q Consensus 182 i~~~~v~~~~~~~-~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 254 (1075)
++++|+++.|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999643 379999999999999999999999999999999999999999999999854 123567999
Q ss_pred EcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcc---cCCCCCCChhHHHHHHHHHHHc
Q 001446 255 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE---INWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 255 v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---~~~g~~LSgGqkqRl~lAral~ 331 (1075)
+||+++++..|++||+.++... .....+.+.++..++.+..+.+|.+.. .....+||||||||++|||||+
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 154 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPG------ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL 154 (234)
T ss_pred eCCCCeeccccHHHHhhccCCC------CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHh
Confidence 9999999889999999886432 123345566677777777766643221 1235789999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 387 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~ 387 (1075)
.+|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++.+..||++++|+++
T Consensus 155 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G 212 (234)
T cd03251 155 KDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDG 212 (234)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCC
Confidence 99999999999999999999999988865 388999999999998889999999863
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=328.77 Aligned_cols=202 Identities=26% Similarity=0.424 Sum_probs=161.5
Q ss_pred CccEEEEeEEEEcCCC--CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccc
Q 001446 179 ANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNK 250 (1075)
Q Consensus 179 ~~~i~~~~v~~~~~~~--~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~ 250 (1075)
.+.++++|+++.|++. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 3579999999999752 479999999999999999999999999999999999999999999999864 12346
Q ss_pred cEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCc---ccCCCCCCChhHHHHHHHH
Q 001446 251 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEK---EINWGDELSLGEQQRLGMA 327 (1075)
Q Consensus 251 ~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---~~~~g~~LSgGqkqRl~lA 327 (1075)
.++|+||++.++..|++||+.++.... ...++.+..+..++.+.++.++.+. ......+||||||||++||
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~------~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSC------SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCC------CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 799999999988889999998764321 1111122222223333333322110 0112378999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 328 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 328 ral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
|||+++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+..||++++|++
T Consensus 163 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~ 223 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDG 223 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecC
Confidence 999999999999999999999999999988865 36899999999999888999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=341.29 Aligned_cols=197 Identities=22% Similarity=0.329 Sum_probs=168.3
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----ccccccEEEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 255 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v 255 (1075)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~ 80 (301)
T TIGR03522 2 SIRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence 378999999995 4679999999999999999999999999999999999999999999999964 1245679999
Q ss_pred cCCCCCCcC-CHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCC
Q 001446 256 PQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 334 (1075)
Q Consensus 256 ~Q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p 334 (1075)
||+|.++.. |+.||+.+.............+++.++++.+++.+..++.+ ..||||||||++|||||+++|
T Consensus 81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKI--------GQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCch--------hhCCHHHHHHHHHHHHHhcCC
Confidence 999988765 99999976432111111112346778999999998877765 689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 335 KFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 335 ~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
+++||||||+|||+.+.+.+.+.+++. ++|+|++||+++.+. .||++++|++
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~ 207 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINK 207 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999887653 789999999999775 6999999986
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=324.65 Aligned_cols=204 Identities=18% Similarity=0.280 Sum_probs=167.1
Q ss_pred EEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc------CCcCcE
Q 001446 838 SFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA------GSGCGI 911 (1075)
Q Consensus 838 ~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~------~~r~~i 911 (1075)
.+.|+.|.|+...++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+ ..|..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 46688899987678999999999999999999999999999999999999999999999999876532 234579
Q ss_pred EEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccc
Q 001446 912 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWE 990 (1075)
Q Consensus 912 ~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g 990 (1075)
+|+||+|.+|+.|+++||.++....+ ....++++.+++.+.++..|.|+++.. ...
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 138 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSPFNK-----------------------QRYKAVTDACSLQPDIDLLPFGDQTEIGERG 138 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCcCCH-----------------------HHHHHHHHHhCcHHHHHhCcCccccCcccCC
Confidence 99999999999999999987532111 112234455555555555566777654 345
Q ss_pred cCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHH--HH---HhcCceEEEecCCCCchhhccceEEEEcC
Q 001446 991 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR--LA---KDMGITFVTSSQRPALIPFHSLELRLIDG 1064 (1075)
Q Consensus 991 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~--~~---~~~~~TvI~IaHRls~i~~~~~~l~l~~g 1064 (1075)
..||+|||||++||||++++|+||||||||++||..+...+.+ ++ ++.+.|+|+++|+.+.+.+.|+++.+.+|
T Consensus 139 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G 217 (218)
T cd03290 139 INLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217 (218)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCC
Confidence 6899999999999999999999999999999999998776654 33 33579999999999988999999999765
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=330.46 Aligned_cols=206 Identities=21% Similarity=0.287 Sum_probs=165.2
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEcC
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 916 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~VpQ 916 (1075)
|+++||++.|++ +++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++...+..+.+++||||
T Consensus 3 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 3 IEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 789999999975 5799999999999999999999999999999999999999999999999988765444567999999
Q ss_pred CCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCCh
Q 001446 917 RPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 995 (1075)
Q Consensus 917 dP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 995 (1075)
+|.+|. .|+++|+.++..... ..... .....++.+.++++.++|.+..... ...||+
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~----------~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 139 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVKP----------RSERP--PEAEIRAKVHELLKLVQLDWLADRY----------PAQLSG 139 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhcc----------ccccC--CHHHHHHHHHHHHHHcCChhhhhcC----------hhhCCH
Confidence 999986 599999986421000 00000 0000123455667777775443322 346999
Q ss_pred hHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCc-hhhccceEEEEcCC
Q 001446 996 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPAL-IPFHSLELRLIDGE 1065 (1075)
Q Consensus 996 GQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~-i~~~~~~l~l~~g~ 1065 (1075)
|||||++|||||+++|++|||||||++||.++...+.+.+++ .++|+|+|+|+++. ..+.|+++.|.+|.
T Consensus 140 G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~ 214 (239)
T cd03296 140 GQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGR 214 (239)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 999999999999999999999999999999999888776643 37899999999985 56899999997664
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=325.59 Aligned_cols=197 Identities=25% Similarity=0.428 Sum_probs=168.1
Q ss_pred EEEEeEEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc---------ccc
Q 001446 182 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLN 249 (1075)
Q Consensus 182 i~~~~v~~~~~~~---~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~---------~~~ 249 (1075)
++++|+++.|+++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 6899999998642 6799999999999999999999999999999999999999999999998641 134
Q ss_pred ccEEEEcCCCCCCc-CCHHHHhcCCCCCCcc-cCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHH
Q 001446 250 KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 327 (1075)
Q Consensus 250 ~~i~~v~Q~~~~~~-~tv~~ni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lA 327 (1075)
+.++|+||+|.++. .|+.||+.++...... ......+++.++++.+++.+..++.+ .+||||||||++||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~lS~G~~qrv~la 153 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP--------HNLSGGQKQRVAIA 153 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh--------hhCCHHHHHHHHHH
Confidence 67999999998876 6999999875321111 01112345778999999988888876 68999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 328 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 328 ral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
||++.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++....||++++|++
T Consensus 154 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~ 216 (220)
T TIGR02982 154 RALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMED 216 (220)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEEC
Confidence 999999999999999999999999988887753 37999999999998888999999975
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=345.79 Aligned_cols=201 Identities=21% Similarity=0.274 Sum_probs=169.9
Q ss_pred CceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEE
Q 001446 835 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 914 (1075)
Q Consensus 835 g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~V 914 (1075)
..|+++||++.|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++......+++++||
T Consensus 5 ~~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 5 NFVVLKNITKRFGS-NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred cEEEEEeEEEEECC-eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 46999999999964 56999999999999999999999999999999999999999999999999998775555679999
Q ss_pred cCCCCCCCc-chhhhhcCCCCh---HHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccc
Q 001446 915 PQRPYTCLG-TLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 990 (1075)
Q Consensus 915 pQdP~Lf~g-Tir~NL~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 990 (1075)
+|+|.||+. |+++|+.|+... ... ..++.+.++++.++|.++..+. .
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~-------------------~~~~~v~~~l~~~gl~~~~~r~----------~ 134 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKMLGVPKE-------------------ERKQRVKEALELVDLAGFEDRY----------V 134 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhHcCCCHH-------------------HHHHHHHHHHHHcCCchhhcCC----------h
Confidence 999999975 999999986421 000 0134556777888886554433 3
Q ss_pred cCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCc-hhhccceEEEEcCC
Q 001446 991 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPAL-IPFHSLELRLIDGE 1065 (1075)
Q Consensus 991 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~-i~~~~~~l~l~~g~ 1065 (1075)
..||||||||+||||||+++|++||||||||+||..+...+.+.+++ .++|+|.|+|.++. ..+.|++++|.+|.
T Consensus 135 ~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~ 214 (351)
T PRK11432 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGK 214 (351)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 56999999999999999999999999999999999998887766542 48999999999974 58899999998765
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=329.04 Aligned_cols=204 Identities=22% Similarity=0.283 Sum_probs=164.8
Q ss_pred ceEEeeeeeeCCCc---cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccC-----C
Q 001446 836 SISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG-----S 907 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~---~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~-----~ 907 (1075)
-|+++||++.|++. .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+. .
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 48999999999752 579999999999999999999999999999999999999999999999999876531 2
Q ss_pred -cCcEEEEcCCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcc
Q 001446 908 -GCGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 985 (1075)
Q Consensus 908 -r~~i~~VpQdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 985 (1075)
+.+++|+||+|.+|++ |+++|+.++... .+.. ....++.+.++++.++|.+.....
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~gl~~~~~~~------ 142 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLI----------GKKK------PAEINSRALEMLAAVGLEHRANHR------ 142 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHh----------cCCC------HHHHHHHHHHHHHHcCCchhhhCC------
Confidence 2569999999999875 999999753110 0000 000123456677777775433222
Q ss_pred ccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCchhhccceEEE
Q 001446 986 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRL 1061 (1075)
Q Consensus 986 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i~~~~~~l~l 1061 (1075)
...||||||||++||||++++|+||||||||++||.++...+.+.+++ .|+|+|+|+|+++.+...++++.|
T Consensus 143 ----~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l 218 (233)
T PRK11629 143 ----PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM 218 (233)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEE
Confidence 346999999999999999999999999999999999999887776643 489999999999988878899999
Q ss_pred EcCC
Q 001446 1062 IDGE 1065 (1075)
Q Consensus 1062 ~~g~ 1065 (1075)
.+|.
T Consensus 219 ~~G~ 222 (233)
T PRK11629 219 RDGR 222 (233)
T ss_pred ECCE
Confidence 7654
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=329.52 Aligned_cols=197 Identities=25% Similarity=0.337 Sum_probs=167.6
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc-------cccccEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------~~~~~i~ 253 (1075)
.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++
T Consensus 2 ~i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 2 ILYLEGLSVSFDG-FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eEEEEeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 5889999999964 6799999999999999999999999999999999999999999999998641 1234699
Q ss_pred EEcCCCCCCcC-CHHHHhcCCCCCCcc--------cCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHH
Q 001446 254 YVPQRPYTAVG-TLRDQLIYPLTSDQE--------VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 324 (1075)
Q Consensus 254 ~v~Q~~~~~~~-tv~~ni~~~~~~~~~--------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl 324 (1075)
|+||++.++.. |++||+.++...... .......++.++++.+++.+..++.+ .+||||||||+
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Ge~qrv 152 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA--------GLLSHGQKQWL 152 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHH
Confidence 99999988875 999999875321110 00112346778899999987777655 68999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 325 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 325 ~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
+||||++.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+. .||+++++++
T Consensus 153 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQ 217 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999998875 3689999999999885 6999999986
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=333.24 Aligned_cols=197 Identities=25% Similarity=0.347 Sum_probs=165.8
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc--------------
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------------- 246 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------------- 246 (1075)
.++++|+++.|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFH-GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 589999999996 45799999999999999999999999999999999999999999999988531
Q ss_pred cccccEEEEcCCCCCCc-CCHHHHhcCCCCC-CcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHH
Q 001446 247 DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 324 (1075)
Q Consensus 247 ~~~~~i~~v~Q~~~~~~-~tv~~ni~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl 324 (1075)
.+++.++|+||++.++. .|++||+.++... .........+++.++++.+++.+..++.+ .+||||||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~Gq~qrv 153 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYP--------RRLSGGQQQRV 153 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCCh--------hhCChHHHHHH
Confidence 13457999999998775 6999999764211 11111112345677889999987766655 68999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 325 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 325 ~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
+|||||+.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .||++++|++
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~ 219 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQ 219 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 999999999999999999999999999999887754 4889999999999885 6999999986
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=326.34 Aligned_cols=202 Identities=21% Similarity=0.252 Sum_probs=162.8
Q ss_pred eEEeeeeeeCCCc---cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccC-----Cc
Q 001446 837 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG-----SG 908 (1075)
Q Consensus 837 I~f~~V~~~yp~~---~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~-----~r 908 (1075)
|+++||++.|++. .++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++...+. .|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 6899999999752 479999999999999999999999999999999999999999999999998876521 12
Q ss_pred -CcEEEEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccc
Q 001446 909 -CGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 986 (1075)
Q Consensus 909 -~~i~~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~ 986 (1075)
.+++||||+|.+|. .|+++|+.++.... ... .....+.+.++++.+++.+.....
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~----------~~~------~~~~~~~~~~~l~~~~l~~~~~~~------- 138 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIG----------KKS------VKEAKERAYEMLEKVGLEHRINHR------- 138 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhc----------CCC------HHHHHHHHHHHHHHcCChhhhhCC-------
Confidence 56999999999986 59999997531100 000 000123355667777765433222
Q ss_pred cccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCchhhccceEEEE
Q 001446 987 LNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRLI 1062 (1075)
Q Consensus 987 ~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i~~~~~~l~l~ 1062 (1075)
...||||||||++||||++++|+||||||||++||.++...+.+.+++ .++|+|+|+|+++.+...|+++.|.
T Consensus 139 ---~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~ 215 (221)
T TIGR02211 139 ---PSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMK 215 (221)
T ss_pred ---hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEe
Confidence 346999999999999999999999999999999999999888776642 3799999999999888889999997
Q ss_pred cC
Q 001446 1063 DG 1064 (1075)
Q Consensus 1063 ~g 1064 (1075)
+|
T Consensus 216 ~G 217 (221)
T TIGR02211 216 DG 217 (221)
T ss_pred CC
Confidence 65
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=331.89 Aligned_cols=199 Identities=20% Similarity=0.206 Sum_probs=165.7
Q ss_pred CccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCC-----CCccEEEeCCcCc-------
Q 001446 179 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 246 (1075)
Q Consensus 179 ~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~------- 246 (1075)
.+.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 11 ~~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYG-KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeC-CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 35799999999996 4579999999999999999999999999999999999986 5899999998541
Q ss_pred -cccccEEEEcCCCCCCcCCHHHHhcCCCCCC-cccCcCCHHHHHHHHHHcCChh----HHhcCCCCcccCCCCCCChhH
Q 001446 247 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGE 320 (1075)
Q Consensus 247 -~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGq 320 (1075)
.++++++|+||++.++..|+++|+.++.... .......++++.++++.+++.. ..++.+ .+|||||
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~Gq 161 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSG--------YSLSGGQ 161 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCC--------CCCCHHH
Confidence 2356799999999888899999998753211 1111112345778899988743 344433 6899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 321 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 321 kqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|||++|||||+.+|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+ ..+|++++|++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 230 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYL 230 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999888865 368999999999987 47999999986
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=329.93 Aligned_cols=197 Identities=25% Similarity=0.354 Sum_probs=166.4
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc------------cc
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------------DL 248 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------------~~ 248 (1075)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+- ..
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYG-AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEEC-CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 478999999996 46799999999999999999999999999999999999999999999998631 13
Q ss_pred cccEEEEcCCCCCCc-CCHHHHhcCCC-CCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHH
Q 001446 249 NKEIFYVPQRPYTAV-GTLRDQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 326 (1075)
Q Consensus 249 ~~~i~~v~Q~~~~~~-~tv~~ni~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~l 326 (1075)
++.++|+||+|.++. .|+.||+.+.. ............++.++++.+++.+..++.+ .+||||||||++|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrv~l 152 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP--------LHLSGGQQQRVAI 152 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHH
Confidence 457999999998876 49999997421 1100001112345678899999988888776 6899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 327 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 327 Aral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|||++.+|+++||||||++||+.+...+.+.+++ .|+|+|++||+.+.+. .+|++++|++
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~ 216 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMEN 216 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999999887764 4899999999999885 6999999985
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=332.54 Aligned_cols=198 Identities=22% Similarity=0.264 Sum_probs=164.6
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCC-----CCccEEEeCCcCc--------
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS-------- 246 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~-------- 246 (1075)
+.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 5 ~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 5 PKMEARGLSFFYG-DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred cEEEEeeeEEEEC-CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 4699999999996 4579999999999999999999999999999999999974 6899999998541
Q ss_pred cccccEEEEcCCCCCCcCCHHHHhcCCCCCCccc-CcCCHHHHHHHHHHcCChhH----HhcCCCCcccCCCCCCChhHH
Q 001446 247 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 321 (1075)
Q Consensus 247 ~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~g~~LSgGqk 321 (1075)
.+++.++|+||++.++..|++||+.++....... .....+++.++++.+++.+. .++.+ .+||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgGq~ 155 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESA--------LGLSGGQQ 155 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc--------ccCCHHHH
Confidence 2356799999999888889999998753211110 11123456778888888542 33333 68999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 322 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 322 qRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+ ..||++++|++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~ 223 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYM 223 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999888764 378999999999987 57999999986
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=340.04 Aligned_cols=203 Identities=22% Similarity=0.242 Sum_probs=164.5
Q ss_pred eEEeeeeeeCCCc----cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc----CCc
Q 001446 837 ISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA----GSG 908 (1075)
Q Consensus 837 I~f~~V~~~yp~~----~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~----~~r 908 (1075)
|+++||++.|++. +++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+++... ..|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 7899999999752 47999999999999999999999999999999999999999999999999987532 345
Q ss_pred CcEEEEcCCC--CCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCch--hhhhhhccCCc
Q 001446 909 CGIFYVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS--YLLEREEVGWD 984 (1075)
Q Consensus 909 ~~i~~VpQdP--~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~--~~i~~~~~Gld 984 (1075)
.+++||||+| .+|..|+++||.++.... +.. .....+.+.++++.++|. ++..+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~----------~~~------~~~~~~~~~~~l~~~gL~~~~~~~~------ 140 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINL----------GLS------EEEIENRVKRAMNIVGLDYEDYKDK------ 140 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHC----------CCC------HHHHHHHHHHHHHHcCCCchhhccC------
Confidence 6899999998 578899999997632100 000 000123455677777774 22211
Q ss_pred cccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceE
Q 001446 985 ANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLEL 1059 (1075)
Q Consensus 985 t~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~~~~l 1059 (1075)
....||||||||++|||||+.+|++|||||||++||+.+...+.+++++ .+.|||+|+|+++.+ ++.|+++
T Consensus 141 ----~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 141 ----SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred ----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 2357999999999999999999999999999999999999888776643 389999999999865 7899999
Q ss_pred EEEcCC
Q 001446 1060 RLIDGE 1065 (1075)
Q Consensus 1060 ~l~~g~ 1065 (1075)
.|.+|.
T Consensus 217 ~l~~G~ 222 (287)
T PRK13637 217 VMNKGK 222 (287)
T ss_pred EEECCE
Confidence 998775
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=327.80 Aligned_cols=207 Identities=25% Similarity=0.365 Sum_probs=166.8
Q ss_pred CCceEEeeeeeeCCCc--cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcC
Q 001446 834 QDSISFSKLDIITPSQ--KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGC 909 (1075)
Q Consensus 834 ~g~I~f~~V~~~yp~~--~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~ 909 (1075)
.|.|+++|+++.|++. .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++...+ ..+.
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 5789999999999753 47999999999999999999999999999999999999999999999999887642 3456
Q ss_pred cEEEEcCCCCCCCcchhhhhcCCCCh--HHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc
Q 001446 910 GIFYVPQRPYTCLGTLRDQIIYPLSR--EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 987 (1075)
Q Consensus 910 ~i~~VpQdP~Lf~gTir~NL~~p~~~--~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 987 (1075)
+++|+||+|.+|.+|+++|+.++... .++..+. .+..++...++..+.|+++..
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~------------------------~~~~~~~~~l~~l~~gl~~~~ 144 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEA------------------------AQKAHAHSFISELASGYDTEV 144 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHH------------------------HHHcCcHHHHHhccccccchh
Confidence 79999999999999999999864321 1111111 111122223333333444433
Q ss_pred -ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcC
Q 001446 988 -NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDG 1064 (1075)
Q Consensus 988 -~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g 1064 (1075)
.....||||||||++||||++++|++|||||||++||.++...+.+.+++ .++|+|+|+|+++.+...|+++.|.+|
T Consensus 145 ~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g 224 (226)
T cd03248 145 GEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGG 224 (226)
T ss_pred hcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCC
Confidence 23567999999999999999999999999999999999999988877654 368999999999988999999999655
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=318.95 Aligned_cols=186 Identities=26% Similarity=0.393 Sum_probs=158.7
Q ss_pred CccEEEEeEEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------cccccc
Q 001446 179 ANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKE 251 (1075)
Q Consensus 179 ~~~i~~~~v~~~~~~~-~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~ 251 (1075)
.+.++++|+++.|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 4 HGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 3569999999999753 479999999999999999999999999999999999999999999999864 124568
Q ss_pred EEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 252 IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 252 i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
++|+||+|.++.+|+++|+.+... ...+++.+.++ .++. ...||||||||++||||++
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-------~~~~~~~~~l~-------~~~~--------~~~LS~G~~qrv~laral~ 141 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-------YSDEEIYGALR-------VSEG--------GLNLSQGQRQLLCLARALL 141 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-------CCHHHHHHHhh-------ccCC--------CCcCCHHHHHHHHHHHHHh
Confidence 999999999988999999975321 12233334443 2222 3689999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
.+|+++||||||++||+.+...+.+.+++ .++|+|++||+.+.+..+|++++|++
T Consensus 142 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~ 198 (207)
T cd03369 142 KRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDA 198 (207)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEEC
Confidence 99999999999999999999999988875 37899999999999878999999986
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=336.48 Aligned_cols=204 Identities=20% Similarity=0.291 Sum_probs=167.5
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEE
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFY 913 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~ 913 (1075)
-|+++||++.|++..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .++.+++|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 4899999999986567999999999999999999999999999999999999999999999999887542 34567999
Q ss_pred EcCCC--CCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccccccc
Q 001446 914 VPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 991 (1075)
Q Consensus 914 VpQdP--~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 991 (1075)
|||+| .+|..|+++|+.++.... +.. ....+..+.++++.++|.....+. ..
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~----------~~~------~~~~~~~~~~~l~~~~L~~~~~~~----------~~ 137 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNM----------GLD------KDEVERRVEEALKAVRMWDFRDKP----------PY 137 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHc----------CCC------HHHHHHHHHHHHHHCCCHHHhcCC----------hh
Confidence 99999 688899999998642100 000 000123456677888875544333 24
Q ss_pred CCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 992 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 992 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
.||||||||++|||||+++|++|||||||++||..+...+.+++++ .++|+|+|+|+++.+ ++.|+++.|.+|.
T Consensus 138 ~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~ 215 (274)
T PRK13647 138 HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGR 215 (274)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999887776643 489999999999876 7999999998776
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=327.99 Aligned_cols=203 Identities=23% Similarity=0.280 Sum_probs=164.5
Q ss_pred eEEeeeeeeCCCc---cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc-cCCcCcEE
Q 001446 837 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIF 912 (1075)
Q Consensus 837 I~f~~V~~~yp~~---~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~-~~~r~~i~ 912 (1075)
|+++||++.|++. +++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++... ...|.+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 6899999999753 2799999999999999999999999999999999999999999999999988653 23456799
Q ss_pred EEcCCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccccccc
Q 001446 913 YVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 991 (1075)
Q Consensus 913 ~VpQdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 991 (1075)
|+||+|.+|.+ |+++|+.++... .+. .....++.+.++++.+++.+..... ..
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~----------~~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~ 135 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGL----------YGL------KGDELTARLEELADRLGMEELLDRR----------VG 135 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHH----------cCC------CHHHHHHHHHHHHHHcCCHHHHhhh----------hh
Confidence 99999999985 999999753110 000 0000123456677777775544332 34
Q ss_pred CCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCc-hhhccceEEEEcCC
Q 001446 992 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPAL-IPFHSLELRLIDGE 1065 (1075)
Q Consensus 992 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~-i~~~~~~l~l~~g~ 1065 (1075)
.||||||||++||||++++|+||||||||++||..+.+.+.+.+++ .++|+|+|+|++.. .++.|+++.+.+|.
T Consensus 136 ~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 213 (218)
T cd03266 136 GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGR 213 (218)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 6999999999999999999999999999999999999888777643 48999999999975 56899999997664
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=331.75 Aligned_cols=211 Identities=26% Similarity=0.296 Sum_probs=166.0
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc-----CCcCcE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCGI 911 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~-----~~r~~i 911 (1075)
|+++||+++|++..++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+ ..+.++
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999975467999999999999999999999999999999999999999999999999887542 235679
Q ss_pred EEEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccc
Q 001446 912 FYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 990 (1075)
Q Consensus 912 ~~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 990 (1075)
+||||+|.+|. .|+++|+.++........... .+. .....++.+.++++.+++...... ..
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~l~~~~l~~~~~~----------~~ 142 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSL--FGL------FPKEEKQRALAALERVGLLDKAYQ----------RA 142 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhh--ccc------CcHHHHHHHHHHHHHcCChhhhCC----------Cc
Confidence 99999999887 699999976432100000000 000 000113445667777777543322 13
Q ss_pred cCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCchh-hccceEEEEcCC
Q 001446 991 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIP-FHSLELRLIDGE 1065 (1075)
Q Consensus 991 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i~-~~~~~l~l~~g~ 1065 (1075)
..||||||||++||||++++|+|||||||||+||..+...+.+.+++ .++|+|+|+|+++.+. +.|+++.|.+|.
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~ 222 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR 222 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 57999999999999999999999999999999999999888776643 3899999999998776 899999997765
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=318.84 Aligned_cols=192 Identities=27% Similarity=0.328 Sum_probs=167.2
Q ss_pred eeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------c---c-ccccEEEEcCCCCCC-cCC
Q 001446 197 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------S---D-LNKEIFYVPQRPYTA-VGT 265 (1075)
Q Consensus 197 ~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~---~-~~~~i~~v~Q~~~~~-~~t 265 (1075)
-++|+||+++.||+..|+|-||||||||+|++.++++|++|+|.++|.+ . + .++++++|||+.-++ ..|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 4789999999999999999999999999999999999999999999975 1 1 246899999998765 469
Q ss_pred HHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 001446 266 LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345 (1075)
Q Consensus 266 v~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~illLDEpts~ 345 (1075)
|.||..||+...........++..+.|+.+||+.+.+++| .+||||+||||.|||||..+|+|||||||+||
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp--------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSA 194 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP--------NELSGGMQQRVGLARALANDPDILLMDEAFSA 194 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc--------ccccchHHHHHHHHHHHccCCCEEEecCchhh
Confidence 9999999988766555556678889999999999999999 69999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH----hcCCeEEEEecChhhH-hhCCeEEEEcCCCcEEEecCCCC
Q 001446 346 VTTDMEERFCAKVR----AMGTSCITISHRPALV-AFHDVVLSLDGEGEWRVHDKRDG 398 (1075)
Q Consensus 346 LD~~~~~~i~~~l~----~~~~t~i~vtH~~~~~-~~~d~i~~l~~~g~~~~~~~~~~ 398 (1075)
|||--+.++.+.|. +.++|+|+||||++.. +..|||..|++ |.+++.++..
T Consensus 195 LDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkd--G~ivQ~Gtp~ 250 (386)
T COG4175 195 LDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKD--GEIVQVGTPE 250 (386)
T ss_pred cChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecC--CeEEEeCCHH
Confidence 99998888877653 4589999999999875 78999999986 3455544443
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=324.67 Aligned_cols=194 Identities=21% Similarity=0.317 Sum_probs=164.8
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc----cccccEEEEcC
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVPQ 257 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v~Q 257 (1075)
++++||++.|++ .. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|+||
T Consensus 2 l~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 2 LKLTDITWLYHH-LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred eEEEEEEEEECC-cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 789999999963 32 399999999999999999999999999999999999999999998641 12457999999
Q ss_pred CCCCCcC-CHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCE
Q 001446 258 RPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 336 (1075)
Q Consensus 258 ~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~i 336 (1075)
++.++.. |+.||+.++...........++++.++++.+++.+..++.| ..||||||||++||||++++|++
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~~p~l 150 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP--------GQLSGGQRQRVALARCLVREQPI 150 (232)
T ss_pred ccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc--------ccCCHHHHHHHHHHHHHhcCCCE
Confidence 9988774 99999987632110011123456788999999998888877 68999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 337 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 337 llLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
+||||||++||+.+++.+.+.+++ .|+|+|++||+++.+. .+|++++|++
T Consensus 151 llLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 205 (232)
T PRK10771 151 LLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVAD 205 (232)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999999999998887753 3789999999999875 6999999985
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=324.20 Aligned_cols=198 Identities=24% Similarity=0.261 Sum_probs=163.7
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEcC
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 916 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~VpQ 916 (1075)
|+++||++.|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.++|.++......+.+++||||
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYGK-KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEECC-eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 578999999964 5799999999999999999999999999999999999999999999999988654334567999999
Q ss_pred CCCCC-CcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCCh
Q 001446 917 RPYTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 995 (1075)
Q Consensus 917 dP~Lf-~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 995 (1075)
+|.+| ..|+++|+.++... .+ ..+..+.++++.+++.+..... ...|||
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~----------~~----------~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 129 (208)
T cd03268 80 APGFYPNLTARENLRLLARL----------LG----------IRKKRIDEVLDVVGLKDSAKKK----------VKGFSL 129 (208)
T ss_pred CCccCccCcHHHHHHHHHHh----------cC----------CcHHHHHHHHHHcCCHHHHhhh----------HhhCCH
Confidence 99888 47999999753210 00 0134456677777775544332 346999
Q ss_pred hHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 996 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 996 GQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
|||||++||||++++|++|||||||++||.++...+.+.+++ .++|+|+|+|++..+ ++.|+++.|.+|.
T Consensus 130 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~ 203 (208)
T cd03268 130 GMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGK 203 (208)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999888776643 489999999999866 6899999997653
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=331.44 Aligned_cols=198 Identities=23% Similarity=0.257 Sum_probs=164.6
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC-----CccEEEeCCcCc--------
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------- 246 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~-------- 246 (1075)
..++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 6 AIIETENLNLFYT-DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred ceEEEeeeEEEeC-CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 4799999999996 46799999999999999999999999999999999999997 489999998541
Q ss_pred cccccEEEEcCCCCCCcCCHHHHhcCCCCCCccc-CcCCHHHHHHHHHHcCCh----hHHhcCCCCcccCCCCCCChhHH
Q 001446 247 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQ 321 (1075)
Q Consensus 247 ~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~~~~~~g~~LSgGqk 321 (1075)
..++.++|+||++.++..|++||+.++....... ....++++.++++.+++. +..++.+ .+||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LSgG~~ 156 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNA--------LSLSGGQQ 156 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCc--------ccCCHHHH
Confidence 2356799999999888889999998764221110 111234567788888874 2334433 68999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 322 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 322 qRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
||++|||||+.+|+++||||||++||+.+...+++.+++ .+.|+|++||+++.+ ..+|++++|++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~ 224 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLN 224 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999888765 368999999999987 46999999986
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=326.95 Aligned_cols=200 Identities=28% Similarity=0.440 Sum_probs=168.1
Q ss_pred EEEEeEEEEcCC--CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc------cccccEE
Q 001446 182 IEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEIF 253 (1075)
Q Consensus 182 i~~~~v~~~~~~--~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~~~~i~ 253 (1075)
++++|+++.|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 468999999964 35799999999999999999999999999999999999999999999998541 2345799
Q ss_pred EEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcc---cCCCCCCChhHHHHHHHHHHH
Q 001446 254 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE---INWGDELSLGEQQRLGMARLF 330 (1075)
Q Consensus 254 ~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---~~~g~~LSgGqkqRl~lAral 330 (1075)
|+||++.++..|++||+.++.... ...++.+.++.+++.++.+.+|.+.. .....+||||||||++|||||
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDA------TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCC------CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 999999888889999998864321 22345566777788777766653221 123478999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcCC
Q 001446 331 YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 387 (1075)
Q Consensus 331 ~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~ 387 (1075)
+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+..||++++|+++
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G 213 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNG 213 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECC
Confidence 999999999999999999999999988764 478999999999998899999999863
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=339.03 Aligned_cols=199 Identities=25% Similarity=0.336 Sum_probs=166.2
Q ss_pred ccEEEEeEEEEcCC---------CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc----
Q 001446 180 NYIEFSGVKVVTPT---------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---- 246 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~---------~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~---- 246 (1075)
..|+++|+++.|+. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 36899999999863 24799999999999999999999999999999999999999999999999641
Q ss_pred -----cccccEEEEcCCCC--CCc-CCHHHHhcCCCCCC-cccCcCCHHHHHHHHHHcCCh-hHHhcCCCCcccCCCCCC
Q 001446 247 -----DLNKEIFYVPQRPY--TAV-GTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDEL 316 (1075)
Q Consensus 247 -----~~~~~i~~v~Q~~~--~~~-~tv~~ni~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~L 316 (1075)
.++++|+||||+|. +.. .|+.+++..+.... ........+++.++++.++|. ...+++| .+|
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p--------~~L 155 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYP--------HMF 155 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCC--------ccC
Confidence 23568999999994 333 59999886542211 111112335678899999996 4667776 689
Q ss_pred ChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 317 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 317 SgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|||||||++|||||+.+|++||+||||++||..+...+++.+++ .|.|+|+||||++.+. .||+|++|.+
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~ 230 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYL 230 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999887753 4899999999999986 6999999986
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=331.87 Aligned_cols=198 Identities=21% Similarity=0.266 Sum_probs=167.0
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc-------------
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------------- 246 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------------- 246 (1075)
+.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 4699999999996 46799999999999999999999999999999999999999999999998531
Q ss_pred ------cccccEEEEcCCCCCCc-CCHHHHhcCCCC-CCcccCcCCHHHHHHHHHHcCChhHH-hcCCCCcccCCCCCCC
Q 001446 247 ------DLNKEIFYVPQRPYTAV-GTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLEYLL-DRYPPEKEINWGDELS 317 (1075)
Q Consensus 247 ------~~~~~i~~v~Q~~~~~~-~tv~~ni~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~g~~LS 317 (1075)
.+++.++|+||++.++. .|++||+.++.. ..........+++.++++.+++.+.. ++.+ .+||
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~~LS 154 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYP--------VHLS 154 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCc--------ccCC
Confidence 12467999999998876 599999976421 11111112234577889999998764 5544 6899
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 318 LGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 318 gGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
||||||++|||||+++|+++||||||++||+.+.+.+.+.+++ .|+|+|+|||+++.+. .||+++++++
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~ 227 (257)
T PRK10619 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQ 227 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999999999999999887654 4899999999999886 5999999986
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=336.86 Aligned_cols=204 Identities=25% Similarity=0.328 Sum_probs=166.8
Q ss_pred ceEEeeeeeeCCC--ccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcE
Q 001446 836 SISFSKLDIITPS--QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGI 911 (1075)
Q Consensus 836 ~I~f~~V~~~yp~--~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i 911 (1075)
-|+++||+++|++ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|.+|+|.+||.++... ..+|.++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 4899999999974 25699999999999999999999999999999999999999999999999998754 2345679
Q ss_pred EEEcCCCC--CCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccccc
Q 001446 912 FYVPQRPY--TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 989 (1075)
Q Consensus 912 ~~VpQdP~--Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~ 989 (1075)
+||||+|. ++..|+++||.++.... +. .+...++.+.++++.++|.+.....
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~----------~~------~~~~~~~~~~~~l~~~gL~~~~~~~---------- 137 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENK----------GI------PHEEMKERVNEALELVGMQDFKERE---------- 137 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhC----------CC------CHHHHHHHHHHHHHHCCCHhHhhCC----------
Confidence 99999993 56779999998642100 00 0000123456778888886554433
Q ss_pred ccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 990 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 990 g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
...||||||||++|||||+++|++|||||||++||..+...+.+.+++ .|+|+|+|+|++..+.+.|+++.+.+|.
T Consensus 138 ~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~ 217 (279)
T PRK13650 138 PARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQ 217 (279)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 246999999999999999999999999999999999999887776542 3899999999998888999999997664
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=325.15 Aligned_cols=200 Identities=27% Similarity=0.404 Sum_probs=159.5
Q ss_pred EEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEcCC
Q 001446 838 SFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQR 917 (1075)
Q Consensus 838 ~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~VpQd 917 (1075)
+++||++.|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.. .|.+++||||+
T Consensus 1 ~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~---~~~~i~~v~q~ 76 (213)
T cd03235 1 EVEDLTVSYGG-HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEK---ERKRIGYVPQR 76 (213)
T ss_pred CcccceeEECC-EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHH---HHhheEEeccc
Confidence 36789998875 569999999999999999999999999999999999999999999999998752 35579999999
Q ss_pred CCC---CCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCC
Q 001446 918 PYT---CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 994 (1075)
Q Consensus 918 P~L---f~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 994 (1075)
|.+ |+.|+++|+.++...... .........++.+.++++.+++.+..... ...||
T Consensus 77 ~~~~~~~~~tv~e~l~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS 134 (213)
T cd03235 77 RSIDRDFPISVRDVVLMGLYGHKG------------LFRRLSKADKAKVDEALERVGLSELADRQ----------IGELS 134 (213)
T ss_pred cccccCCCCcHHHHHHhccccccc------------cccCCCHHHHHHHHHHHHHcCCHHHHhCC----------cccCC
Confidence 987 568999999764321000 00000001133456777777775443322 34699
Q ss_pred hhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhccceEEEEc
Q 001446 995 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLID 1063 (1075)
Q Consensus 995 gGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~~~l~l~~ 1063 (1075)
||||||++|||||+++|++|||||||++||.++...+.+.+++ .++|+|+|+|+++.+ ++.|+++.|.+
T Consensus 135 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 207 (213)
T cd03235 135 GGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR 207 (213)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcC
Confidence 9999999999999999999999999999999999887776643 579999999999866 68899999954
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=328.05 Aligned_cols=201 Identities=24% Similarity=0.347 Sum_probs=173.2
Q ss_pred CccEEEEeEEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------cccccc
Q 001446 179 ANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKE 251 (1075)
Q Consensus 179 ~~~i~~~~v~~~~~~~-~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~ 251 (1075)
.+.++++|+++.|++. +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+++.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 4679999999999753 579999999999999999999999999999999999999999999999864 134567
Q ss_pred EEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcc---cCCCCCCChhHHHHHHHHH
Q 001446 252 IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE---INWGDELSLGEQQRLGMAR 328 (1075)
Q Consensus 252 i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---~~~g~~LSgGqkqRl~lAr 328 (1075)
++|++|+|+++.+|+++|+..... ....++.++++.+++.+.++.+|.+.. ..++.+||||||||++|||
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lar 169 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECK-------CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLAR 169 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCC-------CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHH
Confidence 999999999998999999864311 123456677888888888887764322 2456799999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 329 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 329 al~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
||+++|+++||||||++||+.+...+.+.+++ .+.|+|++||+++.+..||++++|++
T Consensus 170 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~ 229 (257)
T cd03288 170 AFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSR 229 (257)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEEC
Confidence 99999999999999999999999999888765 48999999999999988999999986
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=330.70 Aligned_cols=199 Identities=19% Similarity=0.224 Sum_probs=165.1
Q ss_pred CCccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCC-----CCccEEEeCCcCc------
Q 001446 178 EANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------ 246 (1075)
Q Consensus 178 ~~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~------ 246 (1075)
....++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 10 ~~~~l~i~nl~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 10 KNIIISLQNVTISYG-TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CCceEEEEeEEEEEC-CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 345799999999996 4679999999999999999999999999999999999987 6899999998531
Q ss_pred --cccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChh----HHhcCCCCcccCCCCCCChhH
Q 001446 247 --DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGE 320 (1075)
Q Consensus 247 --~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGq 320 (1075)
.+++.++|+||++.++..|++||+.++...... ....++++.++++.+++.. ..++.+ .+|||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LS~G~ 159 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGY-TGDMDELVERSLRKAAVWDECKDKLNESG--------YSLSGGQ 159 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCC-cHHHHHHHHHHHHHhCCcchhhhhhCCCc--------ccCCHHH
Confidence 234679999999988878999999876432111 1112345667788887643 233332 6899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 321 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 321 kqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|||++|||||+.+|+++||||||++||+.+...+.+.+++ .+.|+|++||+++.+ ..||++++|++
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 9999999999999999999999999999999999988864 368999999999877 57999999985
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=331.61 Aligned_cols=198 Identities=23% Similarity=0.260 Sum_probs=164.0
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC-----CccEEEeCCcCc--------
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------- 246 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~-------- 246 (1075)
..++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 11 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 11 PQIKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eeEEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 4799999999985 46799999999999999999999999999999999999985 899999998541
Q ss_pred cccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChh----HHhcCCCCcccCCCCCCChhHHH
Q 001446 247 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQQ 322 (1075)
Q Consensus 247 ~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGqkq 322 (1075)
.+++.++|+||++.++..|++||+.++...........++++.++++.+++.. ..++.+ .+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgG~~q 161 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPA--------LSLSGGQQQ 161 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh--------hhCCHHHHH
Confidence 23567999999998888999999987532111111111234677888888742 233332 689999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 323 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 323 Rl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+ ..||++++|++
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~ 228 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLM 228 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999888764 378999999999987 56999999986
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=329.86 Aligned_cols=198 Identities=21% Similarity=0.325 Sum_probs=168.2
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 254 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 254 (1075)
+++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYG-TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEEC-CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 478999999996 4689999999999999999999999999999999999999999999999864 123457999
Q ss_pred EcCCCCCCcC-CHHHHhcCCCCCC----cccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHH
Q 001446 255 VPQRPYTAVG-TLRDQLIYPLTSD----QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 329 (1075)
Q Consensus 255 v~Q~~~~~~~-tv~~ni~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAra 329 (1075)
+||++.++.. |+.||+.++.... ........+++.++++.+++.+..++.+ .+||||||||++||||
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~lara 152 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL--------TDLSGGQRQRAFLAMV 152 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc--------ccCCHHHHHHHHHHHH
Confidence 9999987765 9999998753210 0001122345778899999988877766 6899999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcCC
Q 001446 330 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 387 (1075)
Q Consensus 330 l~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~~ 387 (1075)
++.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .+|++++++++
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANG 214 (255)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999888754 4889999999999874 79999999863
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=329.02 Aligned_cols=197 Identities=22% Similarity=0.252 Sum_probs=164.9
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCC---CCccEEEeCCcC------cccccc
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---LVSGHIAKPGVG------SDLNKE 251 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~---~~~G~i~~~~~~------~~~~~~ 251 (1075)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ ...++.
T Consensus 2 ~~~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYG-KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEEC-CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 478999999996 4679999999999999999999999999999999999974 799999999964 123567
Q ss_pred EEEEcCCCCCCcCCHHHHhcCCCCCCccc--CcCCHHHHHHHHHHcCChhH----HhcCCCCcccCCCCCCChhHHHHHH
Q 001446 252 IFYVPQRPYTAVGTLRDQLIYPLTSDQEV--EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQRLG 325 (1075)
Q Consensus 252 i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~g~~LSgGqkqRl~ 325 (1075)
++|+||+|.++..|++||+.++....... ....++++.++++.+++.+. .++. +.+||||||||++
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~~qrv~ 152 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQN--------ALALSGGQQQRLC 152 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCC--------cccCCHHHHHHHH
Confidence 99999999988899999998753221110 11223456788999999543 3332 3689999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 326 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 326 lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|||||+++|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+ ..+|++++|++
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 216 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHL 216 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEEC
Confidence 99999999999999999999999999999888865 489999999999977 47999999986
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=333.30 Aligned_cols=198 Identities=29% Similarity=0.369 Sum_probs=164.3
Q ss_pred cEEEEeEEEEcCC--------CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc------
Q 001446 181 YIEFSGVKVVTPT--------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------ 246 (1075)
Q Consensus 181 ~i~~~~v~~~~~~--------~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------ 246 (1075)
.++++||++.|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 4889999999963 36799999999999999999999999999999999999999999999998641
Q ss_pred ---cccccEEEEcCCCC--CC-cCCHHHHhcCCCCCC-cccCcCCHHHHHHHHHHcCCh-hHHhcCCCCcccCCCCCCCh
Q 001446 247 ---DLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSL 318 (1075)
Q Consensus 247 ---~~~~~i~~v~Q~~~--~~-~~tv~~ni~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSg 318 (1075)
.+++.|+|+||+|. ++ ..|++||+.++.... ........+++.++++.+++. ...++.+ .+|||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~~LSg 153 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLP--------RQLSG 153 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCCh--------hhCCH
Confidence 13467999999983 43 469999997543211 111112235677889999996 5566654 68999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 319 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 319 GqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 154 Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~ 226 (265)
T TIGR02769 154 GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDK 226 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeC
Confidence 999999999999999999999999999999999988887753 3899999999999886 7999999985
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=323.59 Aligned_cols=202 Identities=20% Similarity=0.287 Sum_probs=163.3
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEcC
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 916 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~VpQ 916 (1075)
|+++||+++|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|.+|+|.+||.++...+..+.+++|+||
T Consensus 1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 578999999875 5799999999999999999999999999999999999999999999999998765444567999999
Q ss_pred CCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCCh
Q 001446 917 RPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 995 (1075)
Q Consensus 917 dP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 995 (1075)
+|.+|. .|+++|+.++.... +. .....++.+.++++.+++.+..... ...|||
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 133 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLR----------KV------PKDEIDERVREVAELLQIEHLLDRK----------PKQLSG 133 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhc----------CC------CHHHHHHHHHHHHHHcCCHHHHhCC----------hhhCCH
Confidence 999985 69999997642100 00 0000123455667777775443322 246999
Q ss_pred hHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 996 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 996 GQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
|||||++||||++++|+++||||||++||.++...+.+.+++ .++|+|+|+|++..+ .+.|+++.+.+|.
T Consensus 134 G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~ 208 (213)
T cd03301 134 GQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQ 208 (213)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 999999999999999999999999999999999888776643 389999999999754 5789999997653
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=326.31 Aligned_cols=203 Identities=18% Similarity=0.238 Sum_probs=163.2
Q ss_pred eEEeeeeeeCCCc-cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc-cCCcCcEEEE
Q 001446 837 ISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYV 914 (1075)
Q Consensus 837 I~f~~V~~~yp~~-~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~-~~~r~~i~~V 914 (1075)
|+++||++.|++. +++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++... ...+.+++||
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 5789999999753 6799999999999999999999999999999999999999999999999988653 2345679999
Q ss_pred cCCCCCC-CcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCC
Q 001446 915 PQRPYTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 993 (1075)
Q Consensus 915 pQdP~Lf-~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~L 993 (1075)
||+|.+| ..|+++|+.++... .+.. ....++.+.++++.++|.+..... ...|
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~~l~~~~~~~----------~~~L 134 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARL----------KGLP------KSEIKEEVELLLRVLGLTDKANKR----------ARTL 134 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHcCCHHHHhCh----------hhhC
Confidence 9999998 57999999753110 0000 000123455667777774433221 2469
Q ss_pred ChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 994 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 994 SgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
|+|||||++||||++++|++|||||||++||..+...+.+.+++ .++|+|+++|+++.+ ++.|+++.+.+|.
T Consensus 135 S~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 135 SGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 99999999999999999999999999999999999888777654 468999999999866 5799999997654
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=330.99 Aligned_cols=196 Identities=27% Similarity=0.351 Sum_probs=166.3
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc---------------
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------------- 246 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~--------------- 246 (1075)
|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFG-ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeC-CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 46899999996 46899999999999999999999999999999999999999999999998531
Q ss_pred ----cccccEEEEcCCCCCCc-CCHHHHhcCCCCC-CcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhH
Q 001446 247 ----DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGE 320 (1075)
Q Consensus 247 ----~~~~~i~~v~Q~~~~~~-~tv~~ni~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGq 320 (1075)
.+++.++|++|++.++. .|+.||+.++... ........++++.++++.+++.+..++.+ .+|||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~ 151 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP--------AQLSGGQ 151 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh--------hhcCHHH
Confidence 13567999999998775 6999999874211 01011112345778899999988888766 6899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 321 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 321 kqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|||++|||||+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+ ..+|++++|++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~ 222 (252)
T TIGR03005 152 QQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDK 222 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999999999998887753 388999999999987 57999999986
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=325.00 Aligned_cols=202 Identities=22% Similarity=0.226 Sum_probs=163.5
Q ss_pred eEEeeeeeeCCCc---cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEE
Q 001446 837 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913 (1075)
Q Consensus 837 I~f~~V~~~yp~~---~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~ 913 (1075)
|+++|+++.|++. +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++.. .+.+++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~---~~~~i~~ 77 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG---PGPDRGY 77 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc---ccCcEEE
Confidence 5789999999752 579999999999999999999999999999999999999999999999988763 3567999
Q ss_pred EcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccC
Q 001446 914 VPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 992 (1075)
Q Consensus 914 VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 992 (1075)
|||+|.+|+ .|+++|+.++.... +.. ....++.+.++++.+++.+..... ...
T Consensus 78 v~q~~~~~~~~tv~e~l~~~~~~~----------~~~------~~~~~~~~~~~l~~~~l~~~~~~~----------~~~ 131 (220)
T cd03293 78 VFQQDALLPWLTVLDNVALGLELQ----------GVP------KAEARERAEELLELVGLSGFENAY----------PHQ 131 (220)
T ss_pred EecccccccCCCHHHHHHHHHHHc----------CCC------HHHHHHHHHHHHHHcCChhhhhCC----------ccc
Confidence 999999987 69999997532100 000 001123456677777775544332 246
Q ss_pred CChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCC-chhhccceEEEEcCCcc
Q 001446 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPA-LIPFHSLELRLIDGEGN 1067 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls-~i~~~~~~l~l~~g~g~ 1067 (1075)
||||||||++|||||+++|+++||||||++||..+...+.+.+++ .++|+|+|+|+++ ..++.|+++.|.+|+|.
T Consensus 132 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 132 LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 999999999999999999999999999999999999888776643 3899999999998 45789999999743443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=320.53 Aligned_cols=195 Identities=21% Similarity=0.292 Sum_probs=162.5
Q ss_pred CCCCCCCCceEEeeeeeeCCCc-cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc-
Q 001446 828 WNSTDYQDSISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA- 905 (1075)
Q Consensus 828 w~~~~~~g~I~f~~V~~~yp~~-~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~- 905 (1075)
||. .+.|+++|++++|++. .++|+|+||+|++||.++|+|++|||||||+++|.|+++|.+|+|.++|.++...+
T Consensus 1 ~~~---~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~ 77 (207)
T cd03369 1 WPE---HGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPL 77 (207)
T ss_pred CCC---CCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCH
Confidence 665 5789999999999753 57999999999999999999999999999999999999999999999999886542
Q ss_pred -CCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCc
Q 001446 906 -GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWD 984 (1075)
Q Consensus 906 -~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gld 984 (1075)
..|.+++||||+|.+|++|+++|+.+..... +.++.++++ + +
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~-----------------------~~~~~~~l~---~-----------~ 120 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYS-----------------------DEEIYGALR---V-----------S 120 (207)
T ss_pred HHHHhhEEEEecCCcccCccHHHHhcccCCCC-----------------------HHHHHHHhh---c-----------c
Confidence 2456799999999999999999997422111 111222222 1 1
Q ss_pred cccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEE
Q 001446 985 ANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLI 1062 (1075)
Q Consensus 985 t~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~ 1062 (1075)
.+...||+|||||++||||++++|+|+||||||++||.++...+.+.+++ .++|+|+|+|+++.+...|+++.|.
T Consensus 121 ---~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~ 197 (207)
T cd03369 121 ---EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMD 197 (207)
T ss_pred ---CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEE
Confidence 12356999999999999999999999999999999999999888877754 4899999999999877789999997
Q ss_pred cCC
Q 001446 1063 DGE 1065 (1075)
Q Consensus 1063 ~g~ 1065 (1075)
+|.
T Consensus 198 ~g~ 200 (207)
T cd03369 198 AGE 200 (207)
T ss_pred CCE
Confidence 653
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=324.38 Aligned_cols=200 Identities=25% Similarity=0.289 Sum_probs=162.6
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc-----CCcCcE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCGI 911 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~-----~~r~~i 911 (1075)
|+++||++.|++..++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+ ..|.++
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 689999999965567999999999999999999999999999999999999999999999999887642 135679
Q ss_pred EEEcCCCCCC-CcchhhhhcCCCC---hHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc
Q 001446 912 FYVPQRPYTC-LGTLRDQIIYPLS---REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 987 (1075)
Q Consensus 912 ~~VpQdP~Lf-~gTir~NL~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 987 (1075)
+|+||+|.+| ..|+++|+.++.. ...+ ..++.+.++++.+++.....+.
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~-------------------~~~~~~~~~l~~~~l~~~~~~~-------- 134 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGD-------------------DIRRRVSAALDKVGLLDKAKNF-------- 134 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhcCCCHH-------------------HHHHHHHHHHHHcCChhhhhCC--------
Confidence 9999999874 6799999986421 0000 0122345566777765433222
Q ss_pred ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhccceEEEEc
Q 001446 988 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLID 1063 (1075)
Q Consensus 988 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~~~l~l~~ 1063 (1075)
...||+|||||++||||++++|++|||||||++||.++...+.+.+++ .+.|+|+|+|+++.+ .+.|+++.|.+
T Consensus 135 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 212 (222)
T PRK10908 135 --PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSD 212 (222)
T ss_pred --chhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 346999999999999999999999999999999999998877766543 478999999999866 46899999976
Q ss_pred CC
Q 001446 1064 GE 1065 (1075)
Q Consensus 1064 g~ 1065 (1075)
|.
T Consensus 213 G~ 214 (222)
T PRK10908 213 GH 214 (222)
T ss_pred CE
Confidence 64
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=330.82 Aligned_cols=199 Identities=19% Similarity=0.196 Sum_probs=165.9
Q ss_pred CccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC-----CccEEEeCCcCc-------
Q 001446 179 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS------- 246 (1075)
Q Consensus 179 ~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~------- 246 (1075)
.+.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 17 ~~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 17 EIKMRARDVSVFYG-EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CceEEEEeEEEEEC-CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 35799999999996 46799999999999999999999999999999999999975 899999998541
Q ss_pred -cccccEEEEcCCCCCCcCCHHHHhcCCCCCCcc--cCcCCHHHHHHHHHHcCChhH----HhcCCCCcccCCCCCCChh
Q 001446 247 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLG 319 (1075)
Q Consensus 247 -~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~g~~LSgG 319 (1075)
.+++.++|+||+|.++..|++||+.++...... ......+++.++++.+++.+. .++.+ .+||||
T Consensus 96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgG 167 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPG--------TGLSGG 167 (267)
T ss_pred HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCc--------ccCCHH
Confidence 235679999999998888999999875321111 011123456788999998642 33333 689999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 320 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 320 qkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
||||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+ ..||++++|++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~ 237 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHL 237 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEEC
Confidence 99999999999999999999999999999999999888864 368999999999988 56899999986
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=317.87 Aligned_cols=192 Identities=27% Similarity=0.363 Sum_probs=163.9
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----ccccccEEEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 255 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v 255 (1075)
+++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~ 79 (204)
T PRK13538 1 MLEARNLACERD-ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYL 79 (204)
T ss_pred CeEEEEEEEEEC-CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEe
Confidence 378999999986 4679999999999999999999999999999999999999999999999854 1235679999
Q ss_pred cCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCC
Q 001446 256 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 334 (1075)
Q Consensus 256 ~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p 334 (1075)
+|++.++. .|++||+.++..... ....+++.++++.+++.+..++.+ ..||||||||++||||++++|
T Consensus 80 ~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 80 GHQPGIKTELTALENLRFYQRLHG---PGDDEALWEALAQVGLAGFEDVPV--------RQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred CCccccCcCCcHHHHHHHHHHhcC---ccHHHHHHHHHHHcCCHHHhhCCh--------hhcCHHHHHHHHHHHHHhcCC
Confidence 99987765 599999987542211 123456788999999988777655 689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHhh-CCeEEEE
Q 001446 335 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSL 384 (1075)
Q Consensus 335 ~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~~-~d~i~~l 384 (1075)
+++||||||++||+.+.+.+.+.+++ .+.|+|++||+.+++.. .++++++
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999887764 37899999999999854 4677665
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=306.07 Aligned_cols=205 Identities=20% Similarity=0.238 Sum_probs=166.4
Q ss_pred CceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc-----CCcC
Q 001446 835 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGC 909 (1075)
Q Consensus 835 g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~-----~~r~ 909 (1075)
-.|++++|+++| +++.||+||||+|++||.++|+|+||||||||++++.|++.|++|+|.++|.||..++ ..|.
T Consensus 7 ~~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 7 PLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred ceEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 369999999998 4578999999999999999999999999999999999999999999999999998872 3577
Q ss_pred cEEEEcCCCCCCCc-chhhhhcCCCCh----HHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCc
Q 001446 910 GIFYVPQRPYTCLG-TLRDQIIYPLSR----EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWD 984 (1075)
Q Consensus 910 ~i~~VpQdP~Lf~g-Tir~NL~~p~~~----~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gld 984 (1075)
+++++.|.--||+. |++||+.||... .+..+ ++.+..-|+.|||......
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i-------------------~~lv~~KL~~VGL~~~~~~------ 140 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLI-------------------RELVLMKLELVGLRGAAAD------ 140 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHH-------------------HHHHHHHHHhcCCChhhhh------
Confidence 89999999999976 999999998532 11111 1122233566666433111
Q ss_pred cccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHH----hcCceEEEecCCCC-chhhccceE
Q 001446 985 ANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPA-LIPFHSLEL 1059 (1075)
Q Consensus 985 t~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~----~~~~TvI~IaHRls-~i~~~~~~l 1059 (1075)
-..+.||||.|.|.||||||.-+|+||++|||||+||+-+-..+.++++ ..+.|+|+|+|.+. +....|++.
T Consensus 141 ---~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~ 217 (263)
T COG1127 141 ---LYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVA 217 (263)
T ss_pred ---hCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEE
Confidence 1246799999999999999999999999999999999987665555443 35999999999995 667889999
Q ss_pred EEEcCCcce
Q 001446 1060 RLIDGEGNW 1068 (1075)
Q Consensus 1060 ~l~~g~g~~ 1068 (1075)
.+.||+=-|
T Consensus 218 ~L~~gkv~~ 226 (263)
T COG1127 218 VLADGKVIA 226 (263)
T ss_pred EEeCCEEEE
Confidence 998776433
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=315.93 Aligned_cols=188 Identities=27% Similarity=0.404 Sum_probs=162.3
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----ccccccEEEEc
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 256 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v~ 256 (1075)
++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++++++|+|
T Consensus 1 l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERD-GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeC-CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 46899999985 4679999999999999999999999999999999999999999999999854 22456899999
Q ss_pred CCCCCC-cCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCC
Q 001446 257 QRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 335 (1075)
Q Consensus 257 Q~~~~~-~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~ 335 (1075)
|++.++ ..|++||+.+.... ..++++.++++.+++.+..++.+ .+||||||||++||||++.+|+
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHAD------HSDEQVEEALARVGLNGFEDRPV--------AQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred cccccCCCcCHHHHHHhhccc------ccHHHHHHHHHHcCChhhhcCch--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 999775 47999999875321 13566788999999987776654 6899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhh-HhhCCeEEEE
Q 001446 336 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPAL-VAFHDVVLSL 384 (1075)
Q Consensus 336 illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~-~~~~d~i~~l 384 (1075)
++||||||++||+.+.+.+.+.+++ .|.|+|++||+... ...+++++++
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999988764 48999999998664 4678888876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=330.46 Aligned_cols=198 Identities=21% Similarity=0.252 Sum_probs=168.1
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEE
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 253 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~ 253 (1075)
..|+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++
T Consensus 6 ~~l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 6 ARLRGEQLTLGYG-KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred cEEEEEEEEEEEC-CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 4699999999996 4679999999999999999999999999999999999999999999999864 12345799
Q ss_pred EEcCCCCCCc-CCHHHHhcCCCCCCc----ccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHH
Q 001446 254 YVPQRPYTAV-GTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 328 (1075)
Q Consensus 254 ~v~Q~~~~~~-~tv~~ni~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAr 328 (1075)
|+||++.++. .|++||+.++..... ........++.++++.+++.+..++.+ .+||||||||++|||
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Gq~qrv~lar 156 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV--------DTLSGGQRQRAWIAM 156 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc--------ccCChHHHHHHHHHH
Confidence 9999998765 699999987532110 001112345778999999988877766 689999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 329 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 329 al~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|++.+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+ ..||++++|++
T Consensus 157 al~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 219 (265)
T PRK10253 157 VLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALRE 219 (265)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999887754 378999999999876 57999999986
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=308.47 Aligned_cols=160 Identities=34% Similarity=0.590 Sum_probs=145.7
Q ss_pred EEEEeEEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEE
Q 001446 182 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 254 (1075)
Q Consensus 182 i~~~~v~~~~~~~-~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 254 (1075)
++++|+++.|+++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..++++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 4689999999743 469999999999999999999999999999999999999999999999854 124568999
Q ss_pred EcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCC
Q 001446 255 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 334 (1075)
Q Consensus 255 v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p 334 (1075)
++|+|.++..|++||+ ||||||||++||||++.+|
T Consensus 81 ~~q~~~~~~~tv~~~l---------------------------------------------LS~G~~qrv~la~al~~~p 115 (173)
T cd03246 81 LPQDDELFSGSIAENI---------------------------------------------LSGGQRQRLGLARALYGNP 115 (173)
T ss_pred ECCCCccccCcHHHHC---------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 9999988888999887 8999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 335 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 335 ~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
+++||||||++||+.++..+.+.+++ .|+|+|++||+.+.+..||++++|++
T Consensus 116 ~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~ 170 (173)
T cd03246 116 RILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLED 170 (173)
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 99999999999999999999887754 47899999999999889999999985
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=326.10 Aligned_cols=193 Identities=25% Similarity=0.356 Sum_probs=161.6
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc-------cccccEEE
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIFY 254 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------~~~~~i~~ 254 (1075)
|+++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYG-QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeC-CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 46899999996 46899999999999999999999999999999999999999999999998541 12457999
Q ss_pred EcCCCCCCcC-CHHHHhcCCCCCCcccCcCCHHHHHHHHHHcC-ChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcC
Q 001446 255 VPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 332 (1075)
Q Consensus 255 v~Q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~ 332 (1075)
+||++.++.. |+++|+.++...... ...+...++++.++ +.+..++.+ .+||||||||++|||||++
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~---~~~~~~~~~l~~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPR---RSRKIPDEIYELFPVLKEMLGRRG--------GDLSGGQQQQLAIARALVT 148 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCc---chHHHHHHHHHHHHhHHHHhhCCh--------hhCCHHHHHHHHHHHHHhc
Confidence 9999988775 999999875322111 11233456677766 455555554 6899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 333 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 333 ~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
+|+++||||||++||+.+...+.+.+.+ .++|+|++||+++.+. .||+++++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~ 207 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMER 207 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999887764 3789999999999886 6999999986
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=326.67 Aligned_cols=197 Identities=23% Similarity=0.302 Sum_probs=165.5
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc------c-ccccEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~-~~~~i~ 253 (1075)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .++.++
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 588999999996 46899999999999999999999999999999999999999999999998541 1 346799
Q ss_pred EEcCCCCCCc-CCHHHHhcCCCCCCc-ccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 254 YVPQRPYTAV-GTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 254 ~v~Q~~~~~~-~tv~~ni~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
|+||++.++. .|++||+.+...... ........++.++++.+++.+..++.+ .+||||||||++||||++
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG--------QSLSGGERRRVEIARALA 153 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcch--------hhCCHHHHHHHHHHHHHh
Confidence 9999998776 599999987532211 011112345778899999987766654 689999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~---~~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
.+|+++||||||++||+.+...+.+.++ +.|+|+|++||+++.+ ..||++++|++
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQ 212 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeC
Confidence 9999999999999999999998877664 3589999999999766 57999999975
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=329.43 Aligned_cols=197 Identities=22% Similarity=0.317 Sum_probs=166.0
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc------c-ccccEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~-~~~~i~ 253 (1075)
.++++|+++.|+ ++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .+..++
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 5 LLSVSGLMMRFG-GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred eEEEeeEEEEEC-CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 689999999996 46899999999999999999999999999999999999999999999998641 1 234599
Q ss_pred EEcCCCCCCcC-CHHHHhcCCCCCC-------cc--------cCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCC
Q 001446 254 YVPQRPYTAVG-TLRDQLIYPLTSD-------QE--------VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELS 317 (1075)
Q Consensus 254 ~v~Q~~~~~~~-tv~~ni~~~~~~~-------~~--------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LS 317 (1075)
|+||+|.++.. |++||+.++.... .. .......++.++++.+++.+..++.+ .+||
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS 155 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA--------GNLA 155 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh--------hhCC
Confidence 99999988875 9999998753210 00 00011235667888999988777765 6899
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 318 LGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 318 gGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~-~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
||||||++|||||+.+|+++||||||++||+.+...+.+.+.+ . |+|+|++||+++.+ ..||+++++++
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999887753 3 78999999999987 46999999986
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=340.74 Aligned_cols=186 Identities=27% Similarity=0.330 Sum_probs=158.9
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCc----C------cc---c-cccEEEEcCCC
Q 001446 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV----G------SD---L-NKEIFYVPQRP 259 (1075)
Q Consensus 194 ~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~----~------~~---~-~~~i~~v~Q~~ 259 (1075)
...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. + .. . +++++||||++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 456899999999999999999999999999999999999999999999984 2 01 1 25799999999
Q ss_pred CCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEEE
Q 001446 260 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 338 (1075)
Q Consensus 260 ~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~ill 338 (1075)
.+++ .|++||+.++............+++.++++.++|.++.++.| .+||||||||++|||||+.+|+++|
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~--------~~LSgGq~QRV~LARALa~~P~ILL 187 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP--------GELSGGMQQRVGLARAFAMDADILL 187 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9887 699999998743211111122356778999999998888877 6899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcCC
Q 001446 339 LDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 387 (1075)
Q Consensus 339 LDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~~ 387 (1075)
|||||++||+.++..+++.+.+ .++|+|+||||++.+ +.+|+|++|+++
T Consensus 188 lDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G 241 (382)
T TIGR03415 188 MDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGG 241 (382)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999887753 389999999999986 679999999863
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=339.84 Aligned_cols=185 Identities=25% Similarity=0.278 Sum_probs=157.8
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----ccccccEEEEcCCCCCCcC-CHH
Q 001446 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVPQRPYTAVG-TLR 267 (1075)
Q Consensus 194 ~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v~Q~~~~~~~-tv~ 267 (1075)
++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+||++.++.. |++
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 4679999999999999999999999999999999999999999999999964 1235679999999988764 999
Q ss_pred HHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 001446 268 DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 347 (1075)
Q Consensus 268 ~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD 347 (1075)
||+.+.............+++.++++.+++.+..++.+ .+||||||||++|||||+++|+++||||||+|||
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 156 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPV--------GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLD 156 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 99986432111111112345778999999988777765 6899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 348 TDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 348 ~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
+.+++.+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 157 ~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~ 199 (302)
T TIGR01188 157 PRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDH 199 (302)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEEC
Confidence 9999999887754 4899999999999875 6999999986
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=322.62 Aligned_cols=201 Identities=25% Similarity=0.340 Sum_probs=160.1
Q ss_pred EEeeeeeeCCCc-cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEEE
Q 001446 838 SFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYV 914 (1075)
Q Consensus 838 ~f~~V~~~yp~~-~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~V 914 (1075)
+++||++.|++. .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++...+ ..+.+++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 368899988752 57999999999999999999999999999999999999999999999999887542 345679999
Q ss_pred cCCC--CCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccC
Q 001446 915 PQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 992 (1075)
Q Consensus 915 pQdP--~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 992 (1075)
||+| .++..|+++|+.++.... +.. ....+..+.++++.+++.....+. ...
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~----------~~~------~~~~~~~~~~~l~~~~l~~~~~~~----------~~~ 134 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENL----------GLP------EEEIEERVEEALELVGLEGLRDRS----------PFT 134 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHc----------CCC------HHHHHHHHHHHHHHcCcHhhhcCC----------ccc
Confidence 9998 467889999997531100 000 000123345666777765433222 356
Q ss_pred CChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCchh-hccceEEEEcC
Q 001446 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIP-FHSLELRLIDG 1064 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i~-~~~~~l~l~~g 1064 (1075)
||||||||++|||||+++|++|||||||++||.++...+.+.+++ .++|+|+|+|++..+. +.|+++.|.+|
T Consensus 135 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 135 LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999888776643 4799999999998664 68999999765
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=328.33 Aligned_cols=197 Identities=30% Similarity=0.395 Sum_probs=166.6
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc------cccccEEEE
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEIFYV 255 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~~~~i~~v 255 (1075)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.++|+
T Consensus 2 l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAG-GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 68999999986 46899999999999999999999999999999999999999999999998641 234579999
Q ss_pred cCCCCC-CcCCHHHHhcCCCCCC-cc---cCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHH
Q 001446 256 PQRPYT-AVGTLRDQLIYPLTSD-QE---VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 330 (1075)
Q Consensus 256 ~Q~~~~-~~~tv~~ni~~~~~~~-~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral 330 (1075)
||++.+ +..|++||+.++.... .. ......+++.++++.+++.+..++.+ ..||||||||++||||+
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al 152 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM--------STLSGGERQRVHVARAL 152 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHHHHHHHHHHH
Confidence 999864 4579999998753211 00 01112346778999999988777765 68999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhH-hhCCeEEEEcCC
Q 001446 331 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 387 (1075)
Q Consensus 331 ~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~-~~~d~i~~l~~~ 387 (1075)
+.+|+++||||||++||+.+...+.+.+++ .+.|+|++||+++.+ ..||++++|+++
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGG 213 (256)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999887764 378999999999998 579999999863
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=326.73 Aligned_cols=207 Identities=21% Similarity=0.311 Sum_probs=170.1
Q ss_pred eEEeeeeeeCCCc-cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEE
Q 001446 837 ISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFY 913 (1075)
Q Consensus 837 I~f~~V~~~yp~~-~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~ 913 (1075)
|+++|+++.|++. .++|+|+||++++||.++|+||+|||||||+++|.|+++|++|+|.++|.++...+ ..|.+++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5789999999754 47999999999999999999999999999999999999999999999998886542 23567999
Q ss_pred EcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccC
Q 001446 914 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDI 992 (1075)
Q Consensus 914 VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~ 992 (1075)
+||+|.+|..|+++|+.++..... ...+.+.++..++...++..+.|+++.. .....
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 138 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGAT----------------------REEVEEAARAANAHEFIMELPEGYDTVIGERGVK 138 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCC----------------------HHHHHHHHHHcCcHHHHHhcccCcceeeccCCCc
Confidence 999999999999999986432100 1112223344445555555555666644 24568
Q ss_pred CChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
||+|||||++|||||+++|+++||||||++||.++...+.+.+++ .+.|+|+|+|+++.+...|+++.|.+|.
T Consensus 139 LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~ 213 (234)
T cd03251 139 LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGK 213 (234)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCe
Confidence 999999999999999999999999999999999999988877754 4889999999999888899999997765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=321.31 Aligned_cols=201 Identities=22% Similarity=0.271 Sum_probs=162.7
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc-CCcCcEEEEc
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-GSGCGIFYVP 915 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~-~~r~~i~~Vp 915 (1075)
|+++||++.|++ .++|+|+||+|++| .++|+||||||||||+++|.|+++|.+|+|.++|.++...+ ..+.+++|+|
T Consensus 1 i~~~~~~~~~~~-~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYGK-KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEECC-EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 579999999865 47999999999999 99999999999999999999999999999999999887542 3456799999
Q ss_pred CCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCC
Q 001446 916 QRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 994 (1075)
Q Consensus 916 QdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 994 (1075)
|+|.+|.+ |+++|+.++.... +.. ....++.+.++++.+++.+..+.. ...||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~----------~~~------~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS 132 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLK----------GIP------SKEVKARVDEVLELVNLGDRAKKK----------IGSLS 132 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHh----------CCC------HHHHHHHHHHHHHHCCCHHHHhCc----------hhhCC
Confidence 99999986 9999997531100 000 000123455677777775433221 24699
Q ss_pred hhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 995 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 995 gGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
||||||++||||++++|++|||||||++||..+...+.+.+++ .+.|+|+|+|+++.+ ++.|+++.+.+|.
T Consensus 133 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~ 206 (211)
T cd03264 133 GGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGK 206 (211)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999888877754 368999999999876 5899999997653
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=324.84 Aligned_cols=197 Identities=27% Similarity=0.401 Sum_probs=167.0
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc----cccccEEEEcC
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVPQ 257 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v~Q 257 (1075)
++++|+++.|+ ++++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|+||
T Consensus 1 i~i~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFG-SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEEC-CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 46899999996 45799999999999999999999999999999999999999999999998641 23467999999
Q ss_pred CCCCCcC-CHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCE
Q 001446 258 RPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 336 (1075)
Q Consensus 258 ~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~i 336 (1075)
+|.++.. |++||+.+.............+++.++++.+++.+..++.+ .+||||||||++|||||+++|++
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP--------NQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 9988865 99999987533211111112345678899999988777765 68999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh---c-CCeEEEEecChhhH-hhCCeEEEEcCC
Q 001446 337 AILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALV-AFHDVVLSLDGE 387 (1075)
Q Consensus 337 llLDEpts~LD~~~~~~i~~~l~~---~-~~t~i~vtH~~~~~-~~~d~i~~l~~~ 387 (1075)
+||||||++||+.+++.+.+.+++ . ++|+|++||+++.+ +.||++++++++
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g 207 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNG 207 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECC
Confidence 999999999999999999888764 3 78999999999986 469999999863
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=309.88 Aligned_cols=163 Identities=29% Similarity=0.438 Sum_probs=147.9
Q ss_pred EEEEeEEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----ccccccEEEE
Q 001446 182 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 255 (1075)
Q Consensus 182 i~~~~v~~~~~~~-~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v 255 (1075)
++++|+++.|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4689999999754 379999999999999999999999999999999999999999999999864 1235679999
Q ss_pred cCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCC
Q 001446 256 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 335 (1075)
Q Consensus 256 ~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~ 335 (1075)
||+|+++..|++||+ + ..||||||||++||||++++|+
T Consensus 81 ~q~~~~~~~tv~~~i----------------------------------~--------~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 81 NQRPYLFDTTLRNNL----------------------------------G--------RRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred ccCCeeecccHHHhh----------------------------------c--------ccCCHHHHHHHHHHHHHhcCCC
Confidence 999988888999887 2 5799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 336 FAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 336 illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
++||||||++||+.+++.+++.+++ .+.|+|++||+.+.+..+|++++|++
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~ 171 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLEN 171 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEEC
Confidence 9999999999999999999888865 37899999999999988999999985
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=300.96 Aligned_cols=197 Identities=22% Similarity=0.278 Sum_probs=168.5
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc-------cccccEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------~~~~~i~ 253 (1075)
.+..+|+.++|. ++++++++||++++||++++.||||+||||.+.++.|+.+|++|+|.+++.+- .-|..||
T Consensus 4 ~L~a~~l~K~y~-kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 4 TLVAENLAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred EEEehhhhHhhC-CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 578899999984 67899999999999999999999999999999999999999999999999761 2245699
Q ss_pred EEcCCCCCCcC-CHHHHhcCCCCCCcccC--cCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHH
Q 001446 254 YVPQRPYTAVG-TLRDQLIYPLTSDQEVE--PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 330 (1075)
Q Consensus 254 ~v~Q~~~~~~~-tv~~ni~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral 330 (1075)
|+||+|.+|.. ||+|||..-....+... .....++.+.|+.+.+.+..++. +.+||||||+|+.|||||
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~--------a~sLSGGERRR~EIARaL 154 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSK--------AYSLSGGERRRVEIARAL 154 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCc--------ccccccchHHHHHHHHHH
Confidence 99999999986 99999986554332111 23344577899999999988875 379999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHH---HHHhcCCeEEEEecChh-hHhhCCeEEEEcC
Q 001446 331 YHKPKFAILDECTSAVTTDMEERFCA---KVRAMGTSCITISHRPA-LVAFHDVVLSLDG 386 (1075)
Q Consensus 331 ~~~p~illLDEpts~LD~~~~~~i~~---~l~~~~~t~i~vtH~~~-~~~~~d~i~~l~~ 386 (1075)
+.+|++++||||++|+||.....|.+ .|+..|..|++.-|+.. .+..|||.|++..
T Consensus 155 a~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~ 214 (243)
T COG1137 155 AANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISD 214 (243)
T ss_pred hcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEec
Confidence 99999999999999999988776655 56677999999999974 5789999999975
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=326.13 Aligned_cols=205 Identities=23% Similarity=0.278 Sum_probs=164.0
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCC-----CCCCCeEecCCCCCcccc----CC
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLW-----PVVSGSLTKPSQHIDEEA----GS 907 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~-----~~~sG~I~idg~di~~~~----~~ 907 (1075)
|+++||++.|++ .++|+|+||+|++||+++|+|+||||||||+++|.|++ +|.+|+|.++|.++...+ ..
T Consensus 1 i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGD-KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 578999999975 47999999999999999999999999999999999999 999999999999886542 23
Q ss_pred cCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc
Q 001446 908 GCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 987 (1075)
Q Consensus 908 r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 987 (1075)
|.+++|+||+|.+|..|+++|+.++.... +.. .....+..+.++++.+++.+.....+ +
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~----------~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~---~--- 138 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLH----------GIK-----LKEELDERVEEALRKAALWDEVKDRL---H--- 138 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhc----------CCC-----cHHHHHHHHHHHHHHcCCChHHhccC---C---
Confidence 56799999999999889999997542100 000 00001234566777777754332210 0
Q ss_pred ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCch-hhccceEEEEcC
Q 001446 988 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLIDG 1064 (1075)
Q Consensus 988 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i-~~~~~~l~l~~g 1064 (1075)
...||||||||++|||||+++|++|||||||++||.++...+.+.+++ ..+|+|+|+|+++.+ ++.|+++.|.+|
T Consensus 139 --~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 216 (227)
T cd03260 139 --ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNG 216 (227)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 256999999999999999999999999999999999999888777654 238999999999864 689999999776
Q ss_pred C
Q 001446 1065 E 1065 (1075)
Q Consensus 1065 ~ 1065 (1075)
.
T Consensus 217 ~ 217 (227)
T cd03260 217 R 217 (227)
T ss_pred E
Confidence 5
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=328.02 Aligned_cols=197 Identities=24% Similarity=0.295 Sum_probs=163.6
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC-----CccEEEeCCcC------cccc
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG------SDLN 249 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~-----~~G~i~~~~~~------~~~~ 249 (1075)
.++++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ ..++
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFGQ-VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEECC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 5899999999864 6799999999999999999999999999999999999974 79999999864 1345
Q ss_pred ccEEEEcCCCCCC-cCCHHHHhcCCCCCCcc--cCcCCHHHHHHHHHHcCChh----HHhcCCCCcccCCCCCCChhHHH
Q 001446 250 KEIFYVPQRPYTA-VGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQQ 322 (1075)
Q Consensus 250 ~~i~~v~Q~~~~~-~~tv~~ni~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGqkq 322 (1075)
+.|+|+||+|.++ ..|++||+.++...... ......+++.++++.+++.+ ..++.+ .+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgG~~q 153 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPA--------GKLSGGQQQ 153 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCc--------ccCCHHHHH
Confidence 6899999999754 57999999875322111 01112345678899999854 233333 689999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 323 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 323 Rl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+ ..||++++|++
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 220 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYK 220 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 99999999999999999999999999999999988865 378999999999987 47999999975
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=300.96 Aligned_cols=196 Identities=22% Similarity=0.320 Sum_probs=162.1
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-------ccccccEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-------~~~~~~i~ 253 (1075)
.++++|++..|. ..++|+++||++++||+++|+|+||+|||||||+|+|+.++.+|+|.++|.+ ...+..|+
T Consensus 3 mL~v~~l~~~YG-~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 3 MLEVENLSAGYG-KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred ceeEEeEeeccc-ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 689999999985 5789999999999999999999999999999999999999999999999976 12356799
Q ss_pred EEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcC-ChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 254 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 254 ~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
||||...+|. .||+||+..+...... ........+++.+.+- |.+..++. +.+|||||||.+||||||+
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~--------aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQR--------AGTLSGGEQQMLAIARALM 152 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCc--------ccCCChHHHHHHHHHHHHh
Confidence 9999998876 5999999987543321 1111112445555553 34444443 4799999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~-~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
.+|++|+|||||.||-|...++|++.+++ . |.||++|-++.... +.+|+.|+|++
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~ 212 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLEN 212 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeC
Confidence 99999999999999999999998887653 3 77999999999876 58999999986
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=335.19 Aligned_cols=204 Identities=19% Similarity=0.239 Sum_probs=164.5
Q ss_pred eEEeeeeeeCCCc----cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc------cC
Q 001446 837 ISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE------AG 906 (1075)
Q Consensus 837 I~f~~V~~~yp~~----~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~------~~ 906 (1075)
|+++||++.|++. +++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999742 4699999999999999999999999999999999999999999999999998642 23
Q ss_pred CcCcEEEEcCCC--CCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCch-hhhhhhccCC
Q 001446 907 SGCGIFYVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLEREEVGW 983 (1075)
Q Consensus 907 ~r~~i~~VpQdP--~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~-~~i~~~~~Gl 983 (1075)
.|.+|+||||+| .+|..|+++||.++.... +.. ....++.+.++++.++|. +....
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~----------~~~------~~~~~~~~~~~l~~~gL~~~~~~~----- 141 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNF----------KMN------LDEVKNYAHRLLMDLGFSRDVMSQ----- 141 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHc----------CCC------HHHHHHHHHHHHHHcCCChhhhhC-----
Confidence 466899999998 688899999998642100 000 000123345667777663 22211
Q ss_pred ccccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhccce
Q 001446 984 DANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLE 1058 (1075)
Q Consensus 984 dt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~~~~ 1058 (1075)
....||||||||++|||||+.+|+||||||||++||+.+...+.+++++ .|+|||+|+|+++.+ ++.|++
T Consensus 142 -----~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri 216 (286)
T PRK13646 142 -----SPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEV 216 (286)
T ss_pred -----CcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE
Confidence 2457999999999999999999999999999999999999888776643 489999999999865 689999
Q ss_pred EEEEcCCc
Q 001446 1059 LRLIDGEG 1066 (1075)
Q Consensus 1059 l~l~~g~g 1066 (1075)
+.|.+|.-
T Consensus 217 ~~l~~G~i 224 (286)
T PRK13646 217 IVMKEGSI 224 (286)
T ss_pred EEEECCEE
Confidence 99987763
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=328.82 Aligned_cols=212 Identities=23% Similarity=0.292 Sum_probs=163.2
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc---CCcCcEEE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIFY 913 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~---~~r~~i~~ 913 (1075)
|+++||++.|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|.+|+|.++|.++...+ ..+.+++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFGG-LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEECC-EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 478999999975 56999999999999999999999999999999999999999999999999887653 23456999
Q ss_pred EcCCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccC
Q 001446 914 VPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 992 (1075)
Q Consensus 914 VpQdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 992 (1075)
|||+|.+|.+ |+++|+.++....... ...+. . .........+.+.++++.+++...... ....
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~-~~~~~--~---~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~ 143 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGS-GLLLA--R---ARREEREARERAEELLERVGLADLADR----------PAGE 143 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhcccc-ccccc--c---ccccHHHHHHHHHHHHHHcCccchhhC----------Chhh
Confidence 9999999987 9999997542100000 00000 0 000000112345566777766433221 1356
Q ss_pred CChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
||||||||++||||++++|++|||||||++||.++...+.+.+++ .++|+|+|+|+++.+ .+.|+++.+.+|.
T Consensus 144 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 220 (236)
T cd03219 144 LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGR 220 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999888776643 589999999999876 6799999997654
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=313.56 Aligned_cols=188 Identities=23% Similarity=0.256 Sum_probs=140.1
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEc
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~Vp 915 (1075)
.+-+.||+|.||+.+|.+++++|-|.--.+|+||||+|.||||++.+|.|-.+|..|...-+ .|.+|++.-
T Consensus 586 vLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn---------hrL~iG~Fd 656 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN---------HRLRIGWFD 656 (807)
T ss_pred eeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc---------ceeeeechh
Confidence 46689999999999999999999999999999999999999999999999999999987533 356799888
Q ss_pred CCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCCh
Q 001446 916 QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 995 (1075)
Q Consensus 916 QdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 995 (1075)
|.. -+.|. +..+. .+.+. ..-+..-.+....|...||.... .|. .-..|||
T Consensus 657 Qh~-------~E~L~-~Eetp---~EyLq---------r~FNlpyq~ARK~LG~fGL~sHA-------HTi--kikdLSG 707 (807)
T KOG0066|consen 657 QHA-------NEALN-GEETP---VEYLQ---------RKFNLPYQEARKQLGTFGLASHA-------HTI--KIKDLSG 707 (807)
T ss_pred hhh-------HHhhc-cccCH---HHHHH---------HhcCCChHHHHHHhhhhhhhhcc-------ceE--eeeecCC
Confidence 864 22232 11110 01110 00111223334444444442211 111 1235899
Q ss_pred hHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHhcCceEEEecCCCCchhhccceEEE
Q 001446 996 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRL 1061 (1075)
Q Consensus 996 GQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~~~~TvI~IaHRls~i~~~~~~l~l 1061 (1075)
|||-|+++|-.-|+.|+||||||||.+||.++..++-+.+.+.+..||+|+|...+|.--+-.|.+
T Consensus 708 GQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwV 773 (807)
T KOG0066|consen 708 GQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWV 773 (807)
T ss_pred cchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEE
Confidence 999999999999999999999999999999999999999988888999999999887655555544
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=327.07 Aligned_cols=207 Identities=25% Similarity=0.353 Sum_probs=170.2
Q ss_pred eEEeeeeeeCCC--ccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEE
Q 001446 837 ISFSKLDIITPS--QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIF 912 (1075)
Q Consensus 837 I~f~~V~~~yp~--~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~ 912 (1075)
|+++|+++.|++ ..++|+|+||+|++||.++|+|+||||||||+++|.|+++|.+|+|.++|.++...+ ..+.+++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 578999999975 357999999999999999999999999999999999999999999999999886542 2345799
Q ss_pred EEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-cccc
Q 001446 913 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWED 991 (1075)
Q Consensus 913 ~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~ 991 (1075)
|+||+|.+|+.|+++|+.++.... ....+.+.++..++..+.+.+|.|+++.. ....
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 138 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDA----------------------TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGS 138 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCC----------------------CHHHHHHHHHHcChHHHHHhhccccceeeccCCc
Confidence 999999999999999998643210 01112233344455555555666777654 3457
Q ss_pred CCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 992 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 992 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
+||||||||++||||++++|++|||||||++||..+...+.+.+++ .++|+|+++|+++.+.+.|+++.|.+|.
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~ 214 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQ 214 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCE
Confidence 8999999999999999999999999999999999999888877654 5899999999999888999999997764
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=341.94 Aligned_cols=203 Identities=20% Similarity=0.250 Sum_probs=169.4
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEc
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~Vp 915 (1075)
.|+++||++.|++ ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++......+++++||+
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 4 YLSIDNIRKRFGA-FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred EEEEEEEEEEeCC-eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 4899999999975 569999999999999999999999999999999999999999999999999987654456799999
Q ss_pred CCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCC
Q 001446 916 QRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 994 (1075)
Q Consensus 916 QdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 994 (1075)
|++.||+ .|+++|+.|+..... . .....+..+.++++.++|.++.++. ...||
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~----------~------~~~~~~~~~~~~l~~l~L~~~~~~~----------~~~LS 136 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKNRG----------M------GRAEVAERVAELLDLVGLPGSERKY----------PGQLS 136 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHhcC----------C------CHHHHHHHHHHHHHHcCCCchhhCC----------hhhCC
Confidence 9999996 699999997632100 0 0000134466778888886655443 35699
Q ss_pred hhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCC-chhhccceEEEEcCC
Q 001446 995 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 995 gGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls-~i~~~~~~l~l~~g~ 1065 (1075)
||||||+||||||+++|++|+||||||+||..+...+.+.+++ .++|+|.|+|+++ .....|+++.|.+|.
T Consensus 137 gGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~ 212 (353)
T TIGR03265 137 GGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGV 212 (353)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999998887766543 4899999999998 468899999998775
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=324.68 Aligned_cols=195 Identities=18% Similarity=0.223 Sum_probs=162.9
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc-------cccccEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------~~~~~i~ 253 (1075)
.++++|+++.|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 5 MLSFDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEEeEEEeeC-CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 689999999986 46799999999999999999999999999999999999999999999999641 1346799
Q ss_pred EEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHc-CChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 254 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV-DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 254 ~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
|+||++.++. .|+++|+.++..... .....+++.++++.+ ++.+..++.+ .+||||||||++||||++
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~ 153 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAE--RDQFQERIKWVYELFPRLHERRIQRA--------GTMSGGEQQMLAIGRALM 153 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccC--hhHHHHHHHHHHHHHHHHHHHHhCch--------hhCCHHHHHHHHHHHHHH
Confidence 9999998877 499999987532111 111223455666766 4665555544 689999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..||++++|++
T Consensus 154 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 212 (237)
T PRK11614 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLEN 212 (237)
T ss_pred hCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeC
Confidence 99999999999999999999998887753 489999999999865 67999999986
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=320.49 Aligned_cols=203 Identities=22% Similarity=0.255 Sum_probs=162.9
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcc--c--cCCcCcEE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE--E--AGSGCGIF 912 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~--~--~~~r~~i~ 912 (1075)
|+++||++.|++ .++|+|+||+|+|||++||+||||||||||+++|.|+++|++|+|.++|.++.. . ...+.+++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 578999999975 579999999999999999999999999999999999999999999999998853 1 23456799
Q ss_pred EEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccccccc
Q 001446 913 YVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 991 (1075)
Q Consensus 913 ~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 991 (1075)
|+||+|.+|. .|+++|+.++..... +. .....++.+.++++.+++.....+. ..
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~---------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~ 134 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVK---------GM------SKAEAEERALELLEKVGLADKADAY----------PA 134 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhc---------CC------CHHHHHHHHHHHHHHcCCHhHhhhC----------cc
Confidence 9999999986 699999976421000 00 0000123345666777765443322 24
Q ss_pred CCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 992 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 992 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
.||||||||++||||++++|++|||||||++||.++...+.+.+++ .++|+|+++|+++.+ ++.|+++.|.+|.
T Consensus 135 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 135 QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 6999999999999999999999999999999999999888776643 489999999999876 6899999997653
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=327.06 Aligned_cols=199 Identities=24% Similarity=0.252 Sum_probs=163.4
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEE
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFY 913 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~ 913 (1075)
.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++... ...|.+++|
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSFG-KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 4889999999964 5799999999999999999999999999999999999999999999999988754 234567999
Q ss_pred EcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCch-hhhhhhccCCccccccccC
Q 001446 914 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLEREEVGWDANLNWEDI 992 (1075)
Q Consensus 914 VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~-~~i~~~~~Gldt~~~~g~~ 992 (1075)
+||+|.+|+.|+++|+.++..... ..+..+.++++.+++. +.... ....
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~--------------------~~~~~~~~~l~~~~l~~~~~~~----------~~~~ 131 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKG--------------------EKNVDVEYYLSIVGLNKEYATR----------DVKN 131 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcC--------------------cHHHHHHHHHHHcCCCHHHhhC----------Cccc
Confidence 999999999999999976421000 0123345566666663 22211 1356
Q ss_pred CChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
||||||||++||||++++|++|||||||++||.++...+.+.+++ .|+|+|+|+|+++.+ .+.|+++.|.+|.
T Consensus 132 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~ 209 (241)
T PRK14250 132 LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGI 209 (241)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999998887776543 389999999999865 5899999997664
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=317.50 Aligned_cols=195 Identities=23% Similarity=0.303 Sum_probs=165.7
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc---cccccEEEEc
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---DLNKEIFYVP 256 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~---~~~~~i~~v~ 256 (1075)
..++++|+++.|+ ++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|++
T Consensus 10 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~ 88 (214)
T PRK13543 10 PLLAAHALAFSRN-EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLG 88 (214)
T ss_pred ceEEEeeEEEecC-CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEee
Confidence 4699999999986 45799999999999999999999999999999999999999999999998641 2345699999
Q ss_pred CCCCCCcC-CHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCC
Q 001446 257 QRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 335 (1075)
Q Consensus 257 Q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~ 335 (1075)
|++.++.. |++||+.+...... ...++...++++.+++.+..++.+ .+||||||||++||||++.+|+
T Consensus 89 q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~~p~ 157 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCGLHG---RRAKQMPGSALAIVGLAGYEDTLV--------RQLSAGQKKRLALARLWLSPAP 157 (214)
T ss_pred cCcccccCCcHHHHHHHHHHhcC---CcHHHHHHHHHHHcCChhhccCCh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99988775 99999976432111 112345677889999987766655 6899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 336 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 336 illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
++||||||++||+.+.+.+.+.+++ .|.|+|++||+.+.+ ..+|++++++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 158 LWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999887754 489999999999987 57899998863
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=326.62 Aligned_cols=194 Identities=21% Similarity=0.248 Sum_probs=162.1
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEc
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~Vp 915 (1075)
.|+++||++.|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.. .+.+++|+|
T Consensus 12 ~l~i~~l~~~~~~-~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---~~~~i~~v~ 87 (257)
T PRK11247 12 PLLLNAVSKRYGE-RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAE---AREDTRLMF 87 (257)
T ss_pred cEEEEEEEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHH---hhCceEEEe
Confidence 5999999999964 579999999999999999999999999999999999999999999999976643 356799999
Q ss_pred CCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCC
Q 001446 916 QRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 994 (1075)
Q Consensus 916 QdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 994 (1075)
|+|.+|+ .|+++|+.++.... .+..+.++++.++|.+..... ...||
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~----------------------~~~~~~~~l~~~gl~~~~~~~----------~~~LS 135 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQ----------------------WRDAALQALAAVGLADRANEW----------PAALS 135 (257)
T ss_pred cCccCCCCCcHHHHHHhcccch----------------------HHHHHHHHHHHcCChhHhcCC----------hhhCC
Confidence 9999987 69999998653210 123345566777765433222 35699
Q ss_pred hhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 995 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 995 gGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
||||||++|||||+++|++|||||||++||..+...+.+.+++ .++|+|+|+|+++.+ ++.|+++.|.+|.
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~ 211 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGK 211 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999887766543 489999999999864 7899999997664
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=318.95 Aligned_cols=200 Identities=21% Similarity=0.236 Sum_probs=162.6
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEcC
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 916 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~VpQ 916 (1075)
|+++|+++.|++. . .|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+..+.+++|+||
T Consensus 1 i~~~~l~~~~~~~-~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 1 VRLDKIRFSYGEQ-P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred CEEEeEEEEeCCE-e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 5789999998743 2 399999999999999999999999999999999999999999999998765444567999999
Q ss_pred CCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCCh
Q 001446 917 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 995 (1075)
Q Consensus 917 dP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 995 (1075)
+|.+|.+ |+++|+.++...... .....++.+.++++.+++.+..... ...||+
T Consensus 78 ~~~~~~~~tv~enl~~~~~~~~~----------------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 131 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLSPGLK----------------LTAEDRQAIEVALARVGLAGLEKRL----------PGELSG 131 (211)
T ss_pred ccccCCCCcHHHHHhcccccccC----------------ccHHHHHHHHHHHHHcCCHHHHhCC----------cccCCH
Confidence 9999986 999999865321000 0001134566777877775444332 246999
Q ss_pred hHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 996 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 996 GQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
|||||++||||++++|++|||||||++||.++...+.+.+++ .++|+|+|+|+++.+ ++.|+++.+.+|.
T Consensus 132 G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 206 (211)
T cd03298 132 GERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGR 206 (211)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCE
Confidence 999999999999999999999999999999999887776643 389999999999866 6799999997654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=340.33 Aligned_cols=206 Identities=21% Similarity=0.294 Sum_probs=168.0
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEcC
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 916 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~VpQ 916 (1075)
|+++|+++.|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++......+.+++||||
T Consensus 3 L~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 3 IEIANIKKSFGR-TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEeCC-eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 789999999975 5699999999999999999999999999999999999999999999999999876545567999999
Q ss_pred CCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCCh
Q 001446 917 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 995 (1075)
Q Consensus 917 dP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 995 (1075)
+|.+|+. |+++|+.|+...... . .+ . .....++.+.++++.++|.++..+. ...|||
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~~~-~-----~~----~--~~~~~~~~~~~~l~~~~L~~~~~~~----------~~~LSg 139 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVLPR-R-----ER----P--NAAAIKAKVTQLLEMVQLAHLADRY----------PAQLSG 139 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhccc-c-----cC----C--CHHHHHHHHHHHHHHcCCchhhhCC----------hhhCCH
Confidence 9999974 999999986421000 0 00 0 0001134556778888875544333 356999
Q ss_pred hHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCC-chhhccceEEEEcCC
Q 001446 996 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 996 GQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls-~i~~~~~~l~l~~g~ 1065 (1075)
|||||++|||||+++|++||||||||+||..+...+.+.+++ .++|+|+|+|+++ ...+.|+++.|.+|.
T Consensus 140 Gq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~ 214 (353)
T PRK10851 140 GQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGN 214 (353)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999998877766543 3899999999997 578899999997764
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=320.20 Aligned_cols=192 Identities=28% Similarity=0.298 Sum_probs=165.4
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc--cccccEEEEcCCC
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--DLNKEIFYVPQRP 259 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~--~~~~~i~~v~Q~~ 259 (1075)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ...+.++|+||++
T Consensus 1 l~l~~v~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRFG-KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 46899999986 46799999999999999999999999999999999999999999999998641 1124799999999
Q ss_pred CCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEEE
Q 001446 260 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 338 (1075)
Q Consensus 260 ~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~ill 338 (1075)
.++. .|++||+.++.... .....++.++++.+++++..++.+ .+||||||||++||||++.+|+++|
T Consensus 80 ~~~~~~t~~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~~rv~laral~~~p~lll 147 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLL----GLPDSRIDEVLNIVDLTNTGKKKA--------KQFSLGMKQRLGIAIALLNHPKLLI 147 (223)
T ss_pred CccccCCHHHHHHHHHHHc----CCCHHHHHHHHHHcCCcHHHhhhH--------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8765 59999997643211 113456788999999998877765 6899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 339 LDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 339 LDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|||||++||+.+.+.+.+.+++ .|.|+|++||+++.+ ..||++++|++
T Consensus 148 lDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 199 (223)
T TIGR03740 148 LDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISE 199 (223)
T ss_pred ECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeC
Confidence 9999999999999999888754 478999999999987 47999999976
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=335.48 Aligned_cols=198 Identities=22% Similarity=0.282 Sum_probs=161.7
Q ss_pred cEEEEeEEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCC----CCccEEEeCCcCc------c
Q 001446 181 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP----LVSGHIAKPGVGS------D 247 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~---~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~----~~~G~i~~~~~~~------~ 247 (1075)
.++++|+++.|+.. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 48999999999643 469999999999999999999999999999999999997 4899999999641 1
Q ss_pred ----ccccEEEEcCCCC--CC-cCCHHHHhcCCCCCC-cccCcCCHHHHHHHHHHcCChh---HHhcCCCCcccCCCCCC
Q 001446 248 ----LNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDEL 316 (1075)
Q Consensus 248 ----~~~~i~~v~Q~~~--~~-~~tv~~ni~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~~~~g~~L 316 (1075)
.++.|+||||+|. +. ..|+.+++..+.... ........+++.++++.++|.+ ..+++| .+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p--------~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYP--------HQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCc--------hhC
Confidence 1246999999984 32 347877765432111 0111123456788999999964 456666 689
Q ss_pred ChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 317 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 317 SgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
||||||||+|||||+.+|++||+||||++||+.++..+++.+++ .|.|+|+||||++.+ ..+|+|++|.+
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~ 229 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYA 229 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999887753 489999999999988 57999999986
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=333.23 Aligned_cols=204 Identities=18% Similarity=0.279 Sum_probs=165.1
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcc--c--cCCcCcE
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE--E--AGSGCGI 911 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~--~--~~~r~~i 911 (1075)
-|+++||++.|++++++|+|+||+|++||.+||+|+||||||||+++|.|+++|.+|+|.++|.++.. . ...|.++
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i 84 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV 84 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence 48999999999755679999999999999999999999999999999999999999999999998842 1 2345679
Q ss_pred EEEcCCC--CCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccccc
Q 001446 912 FYVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 989 (1075)
Q Consensus 912 ~~VpQdP--~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~ 989 (1075)
+|+||+| .+|+.|+++|+.++.... +. .....+..+.++++.++|.....+.
T Consensus 85 g~v~q~~~~~~~~~tv~e~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~gL~~~~~~~---------- 138 (283)
T PRK13636 85 GMVFQDPDNQLFSASVYQDVSFGAVNL----------KL------PEDEVRKRVDNALKRTGIEHLKDKP---------- 138 (283)
T ss_pred EEEecCcchhhccccHHHHHHhHHHHc----------CC------CHHHHHHHHHHHHHHCCChhhhhCC----------
Confidence 9999999 678899999997631100 00 0000123345667777775443222
Q ss_pred ccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEEcC
Q 001446 990 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDG 1064 (1075)
Q Consensus 990 g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~~~~l~l~~g 1064 (1075)
...||||||||++|||||+++|+||||||||++||.++...+.+++++ .|+|+|+|+|+++.+ .+.|+++.|.+|
T Consensus 139 ~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G 218 (283)
T PRK13636 139 THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEG 218 (283)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 457999999999999999999999999999999999999877766542 389999999999876 489999999877
Q ss_pred C
Q 001446 1065 E 1065 (1075)
Q Consensus 1065 ~ 1065 (1075)
.
T Consensus 219 ~ 219 (283)
T PRK13636 219 R 219 (283)
T ss_pred E
Confidence 5
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=294.31 Aligned_cols=197 Identities=26% Similarity=0.349 Sum_probs=166.9
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 254 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 254 (1075)
+|+.+|+++.- .++.+|+++||++++||.++|+||||+|||||||.|+|++.|++|++.++|.+ .++.++-+.
T Consensus 1 mi~a~nls~~~-~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 1 MIRAENLSYSL-AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred CeeeeeeEEEe-ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 47889999876 46889999999999999999999999999999999999999999999999975 234567899
Q ss_pred EcCCCCC-CcCCHHHHhcCCCCCCcccCc--CCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 255 VPQRPYT-AVGTLRDQLIYPLTSDQEVEP--LTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 255 v~Q~~~~-~~~tv~~ni~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
+||+..+ |..||+|-+.+|......-.. .+..-..+++..+++..+..+.. .+|||||||||.|||.|.
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y--------~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY--------RTLSGGEQQRVQLARVLA 151 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch--------hhcCchHHHHHHHHHHHH
Confidence 9999765 778999999998654322111 22223678899999999988865 589999999999999998
Q ss_pred C------CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 332 H------KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 332 ~------~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
. ++++|+||||||+||......+++..++ .|..|+.|-||+++. .+||+|++|.+
T Consensus 152 Ql~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~ 216 (259)
T COG4559 152 QLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQ 216 (259)
T ss_pred HccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeC
Confidence 5 4569999999999999988888877654 588999999999987 58999999986
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=341.02 Aligned_cols=203 Identities=24% Similarity=0.286 Sum_probs=165.0
Q ss_pred eEEeeeeeeCC--C-ccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc-----CCc
Q 001446 837 ISFSKLDIITP--S-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSG 908 (1075)
Q Consensus 837 I~f~~V~~~yp--~-~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~-----~~r 908 (1075)
|+++||+++|+ + ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+ ..|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68999999997 2 357999999999999999999999999999999999999999999999999987652 235
Q ss_pred CcEEEEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc
Q 001446 909 CGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 987 (1075)
Q Consensus 909 ~~i~~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 987 (1075)
.+|+||||+|.+|. .|+++|+.++... .+.. ....++.+.++++.++|.+.....
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~----------~~~~------~~~~~~~~~~~l~~~gL~~~~~~~-------- 137 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLEL----------AGTP------KAEIKARVTELLELVGLSDKADRY-------- 137 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHcCCchhhhCC--------
Confidence 67999999999986 6999999864210 0000 000123455677777775443322
Q ss_pred ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEE
Q 001446 988 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLI 1062 (1075)
Q Consensus 988 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~~~~l~l~ 1062 (1075)
...||||||||++|||||+++|+|||||||||+||..+...+.+.+++ .++|+|+|+|+++.+ ++.|+++.|.
T Consensus 138 --~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~ 215 (343)
T PRK11153 138 --PAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVID 215 (343)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999888776643 389999999999865 5799999997
Q ss_pred cCC
Q 001446 1063 DGE 1065 (1075)
Q Consensus 1063 ~g~ 1065 (1075)
+|.
T Consensus 216 ~G~ 218 (343)
T PRK11153 216 AGR 218 (343)
T ss_pred CCE
Confidence 664
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=329.26 Aligned_cols=198 Identities=25% Similarity=0.353 Sum_probs=163.1
Q ss_pred cEEEEeEEEEcCC--------CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc------
Q 001446 181 YIEFSGVKVVTPT--------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------ 246 (1075)
Q Consensus 181 ~i~~~~v~~~~~~--------~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------ 246 (1075)
.|+++||++.|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 6899999999852 24799999999999999999999999999999999999999999999998541
Q ss_pred cccccEEEEcCCCC--CCc-CCHHHHhcCCCCCCc-ccCcCCHHHHHHHHHHcCCh-hHHhcCCCCcccCCCCCCChhHH
Q 001446 247 DLNKEIFYVPQRPY--TAV-GTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 321 (1075)
Q Consensus 247 ~~~~~i~~v~Q~~~--~~~-~tv~~ni~~~~~~~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGqk 321 (1075)
..++.++|+||+|. ++. .|+.+|+.++..... .......+++.++++.+++. +..+..+ .+||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~~ 155 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYP--------HMLAPGQK 155 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCc--------hhcCHHHH
Confidence 12357999999984 333 489999876422110 01111234577889999994 5556554 68999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 322 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 322 qRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 156 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~ 225 (267)
T PRK15112 156 QRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQ 225 (267)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 999999999999999999999999999999999887764 3889999999999986 5999999985
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=322.96 Aligned_cols=196 Identities=23% Similarity=0.353 Sum_probs=166.7
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc----cccccEEEEcC
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVPQ 257 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v~Q 257 (1075)
++++|+++.|++ +++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|++|
T Consensus 1 l~~~~l~~~~~~-~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 468999999964 5799999999999999999999999999999999999999999999998641 23467999999
Q ss_pred CCCCCcC-CHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCE
Q 001446 258 RPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 336 (1075)
Q Consensus 258 ~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~i 336 (1075)
++.++.+ |+++|+.++.............++.++++.+++.+..++.+ ..||||||||++||||++.+|++
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP--------SQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 9988864 99999986432111111112346678899999998888876 68999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 337 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 337 llLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
+||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+. .||+++++++
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~ 206 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNK 206 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 999999999999999999887753 3899999999999874 6999999986
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=321.20 Aligned_cols=185 Identities=31% Similarity=0.422 Sum_probs=161.9
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCccccccEEEEcCCCC
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 260 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~~~ 260 (1075)
.++++|+++.|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +..++|+||++.
T Consensus 4 ~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----~~~i~~v~q~~~ 77 (251)
T PRK09544 4 LVSLENVSVSFG-QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----KLRIGYVPQKLY 77 (251)
T ss_pred EEEEeceEEEEC-CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----ccCEEEeccccc
Confidence 689999999996 46799999999999999999999999999999999999999999999987 347999999987
Q ss_pred CCc---CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEE
Q 001446 261 TAV---GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 337 (1075)
Q Consensus 261 ~~~---~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~il 337 (1075)
++. .|+++++.+.. ...++++.++++.+++.+..++.+ ..||||||||++||||++.+|+++
T Consensus 78 ~~~~l~~~~~~~~~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGq~qrv~laral~~~p~ll 142 (251)
T PRK09544 78 LDTTLPLTVNRFLRLRP-------GTKKEDILPALKRVQAGHLIDAPM--------QKLSGGETQRVLLARALLNRPQLL 142 (251)
T ss_pred cccccChhHHHHHhccc-------cccHHHHHHHHHHcCChHHHhCCh--------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 654 37888875421 123456788999999998887765 689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh---c-CCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 338 ILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 338 lLDEpts~LD~~~~~~i~~~l~~---~-~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
||||||++||+.+...+.+.+++ . ++|+|++||+++.+ ..||++++|++
T Consensus 143 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~ 196 (251)
T PRK09544 143 VLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH 196 (251)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC
Confidence 99999999999999998887753 2 89999999999987 57999999963
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=321.28 Aligned_cols=198 Identities=25% Similarity=0.369 Sum_probs=164.4
Q ss_pred cEEEEeEEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCC---CCccEEEeCCcC---cccccc
Q 001446 181 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---LVSGHIAKPGVG---SDLNKE 251 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~---~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~---~~~G~i~~~~~~---~~~~~~ 251 (1075)
.+.++||++.|++. +++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ ...++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 36799999999764 689999999999999999999999999999999999999 999999999864 234678
Q ss_pred EEEEcCCCCCCcC-CHHHHhcCCCCCCc--c-cCcCCHHHHHH-HHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHH
Q 001446 252 IFYVPQRPYTAVG-TLRDQLIYPLTSDQ--E-VEPLTHGGMVE-LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 326 (1075)
Q Consensus 252 i~~v~Q~~~~~~~-tv~~ni~~~~~~~~--~-~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~l 326 (1075)
++|+||++.++.. |++||+.++..... . .......++.+ .++.+++.+..++.+ ..||||||||++|
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~l 154 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV--------KGISGGERRRVSI 154 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc--------cCcCHHHHHHHHH
Confidence 9999999988876 99999987432110 0 01111123344 788888877666554 6899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecCh--hhHhhCCeEEEEcC
Q 001446 327 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRP--ALVAFHDVVLSLDG 386 (1075)
Q Consensus 327 Aral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~--~~~~~~d~i~~l~~ 386 (1075)
||||+.+|+++||||||++||+.+...+.+.+++ .+.|+|++||+. +....+|++++|++
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~ 219 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS 219 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999888754 478999999997 34578999999986
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=316.11 Aligned_cols=174 Identities=25% Similarity=0.305 Sum_probs=146.1
Q ss_pred CCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc--------cccccEEEEcCCC--CCC
Q 001446 193 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEIFYVPQRP--YTA 262 (1075)
Q Consensus 193 ~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~--------~~~~~i~~v~Q~~--~~~ 262 (1075)
+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+++.++|+||+| .++
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 456799999999999999999999999999999999999999999999998541 2345799999998 466
Q ss_pred cCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeCC
Q 001446 263 VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 342 (1075)
Q Consensus 263 ~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~illLDEp 342 (1075)
..|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+.+|+++|||||
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT--------HCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 7799999987532111111112345678899999988887766 68999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCeEEEEecChhh
Q 001446 343 TSAVTTDMEERFCAKVRA---MGTSCITISHRPAL 374 (1075)
Q Consensus 343 ts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~ 374 (1075)
|++||+.+.+.+.+.+++ .|+|+|++||+++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999887754 48899999999864
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=327.29 Aligned_cols=199 Identities=22% Similarity=0.240 Sum_probs=165.7
Q ss_pred CccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCC-----CCccEEEeCCcCc-------
Q 001446 179 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 246 (1075)
Q Consensus 179 ~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~------- 246 (1075)
...++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 18 ~~~l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 18 EIALSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CeEEEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 45799999999995 4789999999999999999999999999999999999996 5899999998641
Q ss_pred -cccccEEEEcCCCCCCcCCHHHHhcCCCCCCccc-CcCCHHHHHHHHHHcCChh----HHhcCCCCcccCCCCCCChhH
Q 001446 247 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGE 320 (1075)
Q Consensus 247 -~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGq 320 (1075)
..++.++|+||++.++..|++||+.++....... ....++++.++++.+++.+ ..++.+ .+|||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~--------~~LS~G~ 168 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSA--------LTLSGGQ 168 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCc--------ccCCHHH
Confidence 2356799999999888889999998763221110 1112345677888888853 233333 6899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 321 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 321 kqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|||++||||++.+|+++||||||++||+.+...+.+.+++ .+.|+|++||+++.+ ..||++++|++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 237 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYL 237 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999999999999888764 368999999999887 57999999986
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=318.41 Aligned_cols=200 Identities=22% Similarity=0.291 Sum_probs=161.4
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEcC
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 916 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~VpQ 916 (1075)
|+++|+++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.. ..+.+++|+||
T Consensus 1 l~~~~l~~~~~~-~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGR-VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI--AARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECC-EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH--HHHccEEEecc
Confidence 578999998864 579999999999999999999999999999999999999999999999998764 23557999999
Q ss_pred CCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCCh
Q 001446 917 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 995 (1075)
Q Consensus 917 dP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 995 (1075)
+|.+|.+ |+++|+.++... .+.. ....++.+.++++.+++....... ...|||
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 131 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQL----------KGLK------KEEARRRIDEWLERLELSEYANKR----------VEELSK 131 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHH----------cCCC------hHHHHHHHHHHHHHcCChHHHhCc----------HhhCCH
Confidence 9999975 999999753100 0000 001123455677777765433221 346999
Q ss_pred hHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 996 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 996 GQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
|||||++||||++++|+++||||||++||.++...+.+.+++ .++|+|+|+|++..+ ++.|+++.+.+|.
T Consensus 132 G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 205 (210)
T cd03269 132 GNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGR 205 (210)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCE
Confidence 999999999999999999999999999999999888776643 478999999999865 6899999996653
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=313.94 Aligned_cols=187 Identities=23% Similarity=0.327 Sum_probs=161.4
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----ccccccEEEEc
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 256 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v~ 256 (1075)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+|
T Consensus 2 l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 2 LDVIELDFDYH-DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEEEeC-CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 78999999986 4679999999999999999999999999999999999999999999999864 12356899999
Q ss_pred CCCCCC-cCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCC
Q 001446 257 QRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 335 (1075)
Q Consensus 257 Q~~~~~-~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~ 335 (1075)
|++.++ ..|+++|+.++.... ....++.++++.+++.+..++.+ .+||||||||++||||++++|+
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFS-----PGAVGITELCRLFSLEHLIDYPC--------GLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcC-----cchHHHHHHHHHcCCchhhhCCh--------hhcCHHHHHHHHHHHHHhcCCC
Confidence 999875 579999998763211 12346778999999887666544 5899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHhhCCeEE
Q 001446 336 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVL 382 (1075)
Q Consensus 336 illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~~~d~i~ 382 (1075)
++||||||++||+.+.+.+.+.+++ .+.|+|++||+.+.+..+|.-.
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 9999999999999999999888764 4889999999999998888644
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=327.68 Aligned_cols=198 Identities=23% Similarity=0.265 Sum_probs=163.7
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCC-----CCccEEEeCCcCc--------
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS-------- 246 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~-------- 246 (1075)
..++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 20 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 20 HILEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred ceEEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 4699999999996 4679999999999999999999999999999999999864 7899999998541
Q ss_pred cccccEEEEcCCCCCCcCCHHHHhcCCCCCCccc-CcCCHHHHHHHHHHcCCh----hHHhcCCCCcccCCCCCCChhHH
Q 001446 247 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQ 321 (1075)
Q Consensus 247 ~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~~~~~~g~~LSgGqk 321 (1075)
..++.++|+||++.++..|++||+.++....... ....++.+.++++.+++. +..++.+ .+||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgGq~ 170 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSA--------LSLSGGQQ 170 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCc--------ccCCHHHH
Confidence 2356799999999988889999998753211110 111234466778888874 3334433 68999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 322 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 322 qRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+ ..||++++|++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~ 238 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLN 238 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999888765 368999999999976 47999999986
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=325.92 Aligned_cols=197 Identities=25% Similarity=0.293 Sum_probs=163.6
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCC-----CCccEEEeCCcCc--------c
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS--------D 247 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~--------~ 247 (1075)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYG-NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEEC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 589999999996 4679999999999999999999999999999999999997 4899999998641 2
Q ss_pred ccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccC-cCCHHHHHHHHHHcCCh----hHHhcCCCCcccCCCCCCChhHHH
Q 001446 248 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQQ 322 (1075)
Q Consensus 248 ~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~-~~~~~~~~~~l~~~~l~----~~~~~~~~~~~~~~g~~LSgGqkq 322 (1075)
+++.++|++|++.++..|++||+.++........ .....++.++++.+++. +..++.+ .+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~Gq~q 154 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNA--------QAFSGGQQQ 154 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccCh--------hhCCHHHHH
Confidence 3567999999999888999999987532111110 11224566788888884 2233332 689999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 323 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 323 Rl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|++|||||+.+|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++.+. .+|++++|++
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~ 221 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMN 221 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEEC
Confidence 99999999999999999999999999999999888865 3789999999999875 6999999986
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=342.45 Aligned_cols=205 Identities=18% Similarity=0.254 Sum_probs=169.5
Q ss_pred CCceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCC--CeEecCCCCCccccCCcCcE
Q 001446 834 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVS--GSLTKPSQHIDEEAGSGCGI 911 (1075)
Q Consensus 834 ~g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~s--G~I~idg~di~~~~~~r~~i 911 (1075)
.|.|+++||+++|++ ..+|+|+||+|++||.++|+||||||||||+++|.|+++|++ |+|.+||.++......+.+|
T Consensus 3 ~~~l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~i 81 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA-NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGL 81 (362)
T ss_pred ceEEEEEEEEEEECC-eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCE
Confidence 367999999999975 569999999999999999999999999999999999999999 99999999987664445679
Q ss_pred EEEcCCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccc
Q 001446 912 FYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 990 (1075)
Q Consensus 912 ~~VpQdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 990 (1075)
+||+|+|.||+. |+++||.|+..... . .....+..+.++++.++|.++..+. .
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~~----------~------~~~~~~~~v~~~l~~~gL~~~~~~~----------~ 135 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQK----------M------PKADIAERVADALKLVGLGDAAAHL----------P 135 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHcC----------C------CHHHHHHHHHHHHHhcCCCchhhCC----------h
Confidence 999999999976 99999987532100 0 0000123456678888886655444 2
Q ss_pred cCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----c-CceEEEecCCCCc-hhhccceEEEEcC
Q 001446 991 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----M-GITFVTSSQRPAL-IPFHSLELRLIDG 1064 (1075)
Q Consensus 991 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~-~~TvI~IaHRls~-i~~~~~~l~l~~g 1064 (1075)
..||||||||+||||||+++|++||||||||+||..+...+.+.+++ . |.|+|.|+|+++. ..+.|++++|.+|
T Consensus 136 ~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G 215 (362)
T TIGR03258 136 AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDG 215 (362)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999998877665532 3 7899999999974 6789999999776
Q ss_pred C
Q 001446 1065 E 1065 (1075)
Q Consensus 1065 ~ 1065 (1075)
.
T Consensus 216 ~ 216 (362)
T TIGR03258 216 R 216 (362)
T ss_pred E
Confidence 4
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=324.79 Aligned_cols=202 Identities=23% Similarity=0.248 Sum_probs=163.5
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEcC
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 916 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~VpQ 916 (1075)
|+++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++... +.+++|+||
T Consensus 2 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---~~~~~~v~q 77 (255)
T PRK11248 2 LQISHLYADYGG-KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP---GAERGVVFQ 77 (255)
T ss_pred EEEEEEEEEeCC-eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC---CCcEEEEeC
Confidence 689999999965 5799999999999999999999999999999999999999999999999987642 245899999
Q ss_pred CCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCCh
Q 001446 917 RPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 995 (1075)
Q Consensus 917 dP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 995 (1075)
+|.+|+ .|+++|+.++... .+.. ....+..+.++++.+++.+..... ...|||
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~gl~~~~~~~----------~~~LSg 131 (255)
T PRK11248 78 NEGLLPWRNVQDNVAFGLQL----------AGVE------KMQRLEIAHQMLKKVGLEGAEKRY----------IWQLSG 131 (255)
T ss_pred CCccCCCCcHHHHHHhHHHH----------cCCC------HHHHHHHHHHHHHHcCChhHhhCC----------hhhCCH
Confidence 999887 6999999754210 0000 000123456677777775443222 356999
Q ss_pred hHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEEcCCcce
Q 001446 996 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGEGNW 1068 (1075)
Q Consensus 996 GQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~~~~l~l~~g~g~~ 1068 (1075)
|||||++|||||+++|++|||||||++||.++...+.+.+++ .++|+|+|+|+++.+ .+.|+++.|.+|+|..
T Consensus 132 Gq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i 209 (255)
T PRK11248 132 GQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRV 209 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEE
Confidence 999999999999999999999999999999999888776643 389999999999865 6889999997656654
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=326.53 Aligned_cols=196 Identities=27% Similarity=0.332 Sum_probs=162.8
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC--ccc-cccEEEEcC
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--SDL-NKEIFYVPQ 257 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~--~~~-~~~i~~v~Q 257 (1075)
.++++|+++.|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ... ++.++|+||
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 58999999999756789999999999999999999999999999999999999999999999964 112 246999999
Q ss_pred CCCC---CcCCHHHHhcCCCCCC-c---ccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHH
Q 001446 258 RPYT---AVGTLRDQLIYPLTSD-Q---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 330 (1075)
Q Consensus 258 ~~~~---~~~tv~~ni~~~~~~~-~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral 330 (1075)
+|.+ +..++++|+.++.... . .......+++.++++.+++.+..++.+ .+||||||||++|||||
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgG~~qrv~laraL 157 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI--------GELSGGQKKRVFLARAI 157 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc--------ccCCHHHHHHHHHHHHH
Confidence 9864 3457899987642110 0 001112345677889999988777765 68999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhH-hhCCeEEEE
Q 001446 331 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSL 384 (1075)
Q Consensus 331 ~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~-~~~d~i~~l 384 (1075)
+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..||+++.+
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~ 215 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV 215 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999888754 488999999999876 579999777
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=314.13 Aligned_cols=192 Identities=28% Similarity=0.356 Sum_probs=164.1
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc---cccccEEEEcC
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---DLNKEIFYVPQ 257 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~---~~~~~i~~v~Q 257 (1075)
.++++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|++|
T Consensus 2 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 2 MLEGEDLACVRGG-RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEEeEEEEECC-eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence 4789999999964 5799999999999999999999999999999999999999999999998641 14567999998
Q ss_pred CCCCC-cCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCE
Q 001446 258 RPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 336 (1075)
Q Consensus 258 ~~~~~-~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~i 336 (1075)
++.++ ..|++||+.+..... ...+.++.++++.+++.+..+..+ .+||||||||++||||++++|++
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 81 RNAMKPALTVAENLEFWAAFL----GGEELDIAAALEAVGLAPLAHLPF--------GYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred CCcCCCCCcHHHHHHHHHHhc----CCcHHHHHHHHHHcCCHHHHcCCh--------hhcCHHHHHHHHHHHHHhcCCCE
Confidence 87664 579999997643211 112345788999999987766544 68999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 337 AILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 337 llLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
+||||||++||+.+...+.+.+++ .|+|+|++||+.+.+.. |+++.++.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999888764 48999999999999887 99988753
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=339.63 Aligned_cols=207 Identities=31% Similarity=0.428 Sum_probs=175.4
Q ss_pred CccEEEEeEEEEcCC------C----CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC---
Q 001446 179 ANYIEFSGVKVVTPT------G----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--- 245 (1075)
Q Consensus 179 ~~~i~~~~v~~~~~~------~----~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~--- 245 (1075)
.+.++++|+++.|.. + ..+++||||++.+||+++|||+||||||||.|+|+|+.+|++|+|.++|.+
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 456889999998863 1 368999999999999999999999999999999999999999999999864
Q ss_pred -----ccccccEEEEcCCCCC---CcCCHHHHhcCCCCCCccc-CcCCHHHHHHHHHHcCChh-HHhcCCCCcccCCCCC
Q 001446 246 -----SDLNKEIFYVPQRPYT---AVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDE 315 (1075)
Q Consensus 246 -----~~~~~~i~~v~Q~~~~---~~~tv~~ni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~g~~ 315 (1075)
...++++-++||+|+. +..||+++|..+....... .....+++.++++.++|.. +++++| ++
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP--------~e 429 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP--------HE 429 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc--------hh
Confidence 2345789999999974 4469999998876533221 1223456888999999987 789998 69
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcCCCcE
Q 001446 316 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEW 390 (1075)
Q Consensus 316 LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~~g~~ 390 (1075)
||||||||+||||||..+|+++++|||||+||+.+...+.+.+++ .|.|.|+||||+..++ .||+|.+|.+ |.
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~--G~ 507 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYD--GR 507 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEEC--Ce
Confidence 999999999999999999999999999999999999999887753 5999999999999997 5999999986 34
Q ss_pred EEecC
Q 001446 391 RVHDK 395 (1075)
Q Consensus 391 ~~~~~ 395 (1075)
+++.+
T Consensus 508 iVE~G 512 (539)
T COG1123 508 IVEEG 512 (539)
T ss_pred EEEeC
Confidence 55443
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=332.93 Aligned_cols=200 Identities=21% Similarity=0.217 Sum_probs=163.4
Q ss_pred eEEeeeeeeCCCc----cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc------cC
Q 001446 837 ISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE------AG 906 (1075)
Q Consensus 837 I~f~~V~~~yp~~----~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~------~~ 906 (1075)
|+|+||++.|+.. +++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++... ..
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 7899999999743 3699999999999999999999999999999999999999999999999998531 23
Q ss_pred CcCcEEEEcCCC--CCCCcchhhhhcCCCC---hHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCch-hhhhhhc
Q 001446 907 SGCGIFYVPQRP--YTCLGTLRDQIIYPLS---REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLEREE 980 (1075)
Q Consensus 907 ~r~~i~~VpQdP--~Lf~gTir~NL~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~-~~i~~~~ 980 (1075)
.|.+++||+|+| .+|..|+.+|+.++.. .... ..+..+.++++.++|. .+..+
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~-------------------~~~~~~~~~l~~~~L~~~~~~~-- 140 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKE-------------------KAEKIAAEKLEMVGLADEFWEK-- 140 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHH-------------------HHHHHHHHHHHHcCCChhhccC--
Confidence 456799999998 7899999999976321 0000 0123455667777763 22221
Q ss_pred cCCccccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhcc
Q 001446 981 VGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHS 1056 (1075)
Q Consensus 981 ~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~ 1056 (1075)
....||||||||++|||||+.+|+||||||||++||+++...+.+.+++ .++|||+|+|+++.+ .+.|
T Consensus 141 --------~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~d 212 (288)
T PRK13643 141 --------SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYAD 212 (288)
T ss_pred --------CcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 1356999999999999999999999999999999999999887776543 489999999999865 7899
Q ss_pred ceEEEEcCC
Q 001446 1057 LELRLIDGE 1065 (1075)
Q Consensus 1057 ~~l~l~~g~ 1065 (1075)
+++.|.+|.
T Consensus 213 ri~~l~~G~ 221 (288)
T PRK13643 213 YVYLLEKGH 221 (288)
T ss_pred EEEEEECCE
Confidence 999997765
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=323.05 Aligned_cols=202 Identities=18% Similarity=0.276 Sum_probs=162.1
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc-CCcCcEEEEc
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-GSGCGIFYVP 915 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~-~~r~~i~~Vp 915 (1075)
|+++|+++.|++ +++|+|+||+|++||.+||+||||||||||+++|.|+++|.+|+|.+||.++...+ ..+.+++|+|
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 2 LEVAGLSFAYGA-RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred EEEEeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 689999999974 57999999999999999999999999999999999999999999999999887542 2234799999
Q ss_pred CCCCC-CCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCC
Q 001446 916 QRPYT-CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 994 (1075)
Q Consensus 916 QdP~L-f~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 994 (1075)
|+|.+ +..|+++|+.++..... . .....++.+.++++.+++...... ....||
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~----------~------~~~~~~~~~~~~l~~~gl~~~~~~----------~~~~LS 134 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHG----------L------SRAEARERIAALLARLGLAERADD----------KVRELN 134 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcC----------C------CHHHHHHHHHHHHHHcCChhhhcC----------ChhhCC
Confidence 99988 56799999975321000 0 000012334566677766433221 134699
Q ss_pred hhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 995 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 995 gGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
||||||++||||++++|+|+||||||++||.++...+.+.+++ .++|+|+|+|+++.+...|+++.|.+|.
T Consensus 135 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~ 209 (236)
T TIGR03864 135 GGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGR 209 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCe
Confidence 9999999999999999999999999999999999888776543 4899999999999888899999997664
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=329.36 Aligned_cols=204 Identities=22% Similarity=0.316 Sum_probs=166.3
Q ss_pred ceEEeeeeeeCCC-ccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEE
Q 001446 836 SISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIF 912 (1075)
Q Consensus 836 ~I~f~~V~~~yp~-~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~ 912 (1075)
.|+++|+++.|++ .+++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++...+ .+|.+++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 5899999999974 568999999999999999999999999999999999999999999999999987542 3466799
Q ss_pred EEcCCC--CCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccc
Q 001446 913 YVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 990 (1075)
Q Consensus 913 ~VpQdP--~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 990 (1075)
|+||+| .++..|+++||.++.... +. ......+.+.++++.++|.+..... .
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~ 140 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENK----------KV------PPKKMKDIIDDLAKKVGMEDYLDKE----------P 140 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHc----------CC------CHHHHHHHHHHHHHHcCCHHHhhCC----------c
Confidence 999999 466789999997632100 00 0000122345667777775544332 2
Q ss_pred cCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---c-CceEEEecCCCCchhhccceEEEEcCC
Q 001446 991 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---M-GITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 991 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~-~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
..||||||||++|||||+++|++|||||||++||..+...+.+.+++ . ++|+|+++|+++.+.+.|+++.|.+|.
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~ 219 (271)
T PRK13632 141 QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGK 219 (271)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCE
Confidence 56999999999999999999999999999999999999888777643 2 589999999999888999999997765
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=325.26 Aligned_cols=197 Identities=24% Similarity=0.305 Sum_probs=160.7
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCC--CCCccEEEeCCcCc------c-ccccE
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVGS------D-LNKEI 252 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~--~~~~G~i~~~~~~~------~-~~~~i 252 (1075)
|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|.+. . .+..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVE-DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEEC-CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 46899999996 467999999999999999999999999999999999994 79999999998641 1 13359
Q ss_pred EEEcCCCCCCcC-CHHHHhcCCCCCCcc-------cCcCCHHHHHHHHHHcCChh-HHhcCCCCcccCCCCCCChhHHHH
Q 001446 253 FYVPQRPYTAVG-TLRDQLIYPLTSDQE-------VEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQR 323 (1075)
Q Consensus 253 ~~v~Q~~~~~~~-tv~~ni~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~g~~LSgGqkqR 323 (1075)
+|+||+|.++.. |+++|+.+....... ......+++.++++.+++.+ ..++.+ ...||||||||
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-------~~~LS~G~~qr 152 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSV-------NEGFSGGEKKR 152 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhccccc-------ccCcCHHHHHH
Confidence 999999987765 999999764221100 00111345678888999973 445543 12599999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHhh--CCeEEEEcC
Q 001446 324 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF--HDVVLSLDG 386 (1075)
Q Consensus 324 l~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~~--~d~i~~l~~ 386 (1075)
++|||||+.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+.. ||++++|++
T Consensus 153 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~ 220 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLD 220 (243)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeC
Confidence 9999999999999999999999999999999888764 47899999999999864 799999986
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=324.62 Aligned_cols=199 Identities=21% Similarity=0.209 Sum_probs=164.6
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC-----CccEEEeCCcCc--------
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------- 246 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~-------- 246 (1075)
..++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 3 IKMESKNLNLWYG-EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred cEEEEEEeEEEEC-CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 3689999999996 46799999999999999999999999999999999999875 799999998641
Q ss_pred cccccEEEEcCCCCCCcCCHHHHhcCCCCCCcc-cCcCCHHHHHHHHHHcCChh----HHhcCCCCcccCCCCCCChhHH
Q 001446 247 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 321 (1075)
Q Consensus 247 ~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGqk 321 (1075)
..++.++|+||++.++..|++||+.++...... ......+++.++++.+++.+ ..++.+ ..||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~~ 153 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSA--------LKLSGGQQ 153 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCc--------ccCCHHHH
Confidence 235679999999998889999999875322111 01112345667888888743 333333 68999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChhhHh-hCCeEEEEcCC
Q 001446 322 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 387 (1075)
Q Consensus 322 qRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~~ 387 (1075)
||++||||++.+|+++||||||++||+.+...+.+.+++. ++|+|++||+++.+. .||++++++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G 222 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMG 222 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999998887652 689999999999875 69999999863
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=325.98 Aligned_cols=198 Identities=22% Similarity=0.236 Sum_probs=163.4
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCC--C---CccEEEeCCcCc--------
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVGS-------- 246 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~--~---~~G~i~~~~~~~-------- 246 (1075)
..++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 11 ~~l~i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 11 EVYQINGMNLWYG-QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred ceEEEeeEEEEEC-CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 4799999999986 4579999999999999999999999999999999999987 3 699999998641
Q ss_pred cccccEEEEcCCCCCCcCCHHHHhcCCCCCCccc-CcCCHHHHHHHHHHcCChhH----HhcCCCCcccCCCCCCChhHH
Q 001446 247 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 321 (1075)
Q Consensus 247 ~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~g~~LSgGqk 321 (1075)
.+++.++|+||++.++..|++||+.++....... .....+++.++++.+++.+. .++. ..+||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--------~~~LS~Gq~ 161 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ--------ALSLSGGQQ 161 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCC--------cccCCHHHH
Confidence 2356799999999988889999998753221110 01112345677888888542 3332 368999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 322 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 322 qRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+. .||++++|++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 229 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYM 229 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999888765 3789999999999874 7999999986
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=325.15 Aligned_cols=197 Identities=19% Similarity=0.250 Sum_probs=166.6
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCC---ccEEEeCCcCc-----------
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVGS----------- 246 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~---~G~i~~~~~~~----------- 246 (1075)
.++++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 4 ~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 4 IIRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred EEEEeeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 689999999986 568999999999999999999999999999999999999986 49999999541
Q ss_pred cccccEEEEcCCCCCCc-CCHHHHhcCCCCCCc--------ccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCC
Q 001446 247 DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQ--------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELS 317 (1075)
Q Consensus 247 ~~~~~i~~v~Q~~~~~~-~tv~~ni~~~~~~~~--------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LS 317 (1075)
.+++.++|+||++.++. .|+++|+.++..... ........++.++++.+++.+..++.+ .+||
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS 154 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV--------STLS 154 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc--------cccC
Confidence 12457999999998776 599999987532110 001112346788999999988777765 6899
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 318 LGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 318 gGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+++.+ ..||+++++++
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~ 228 (262)
T PRK09984 155 GGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQ 228 (262)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999888764 379999999999975 67999999986
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=324.47 Aligned_cols=202 Identities=22% Similarity=0.325 Sum_probs=162.8
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc---CCcCcEEE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIFY 913 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~---~~r~~i~~ 913 (1075)
|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+ ..+.+++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYGK-RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeCC-EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 578999999974 56999999999999999999999999999999999999999999999999887653 23456999
Q ss_pred EcCCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccC
Q 001446 914 VPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 992 (1075)
Q Consensus 914 VpQdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 992 (1075)
+||+|.+|++ |+++|+.++.... +. .....+..+.++++.+++.+.... ....
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~ 133 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIR----------GL------SKKEREEKLEELLEEFHITHLRKS----------KASS 133 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhc----------CC------CHHHHHHHHHHHHHHcCChhhhhC----------Chhh
Confidence 9999999987 9999997532100 00 000012334566677666443222 1356
Q ss_pred CChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCC-chhhccceEEEEcCC
Q 001446 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls-~i~~~~~~l~l~~g~ 1065 (1075)
||+|||||++||||++++|++|||||||++||.++.+.+.+.+++ .++|+|+++|+++ ..++.|+++.|.+|.
T Consensus 134 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 210 (232)
T cd03218 134 LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGK 210 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 999999999999999999999999999999999999888776643 4899999999995 677899999997765
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=324.65 Aligned_cols=203 Identities=25% Similarity=0.267 Sum_probs=163.0
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEEE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYV 914 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~V 914 (1075)
++++||++.|++..++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++...+ ..+.+++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 478999999975356999999999999999999999999999999999999999999999999887642 345679999
Q ss_pred cCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchh--hhhhhccCCcccccccc
Q 001446 915 PQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY--LLEREEVGWDANLNWED 991 (1075)
Q Consensus 915 pQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~--~i~~~~~Gldt~~~~g~ 991 (1075)
||+|.+|. .|+++|+.++... .+.. ....++.+.++++.+++.. .... ...
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~----------~~~~------~~~~~~~~~~~l~~l~l~~~~~~~~----------~~~ 134 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKL----------LKWP------KEKIRERADELLALVGLDPAEFADR----------YPH 134 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHcCCCcHHHHhc----------Chh
Confidence 99999996 6999999753110 0000 0001234556777777642 2111 135
Q ss_pred CCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCc-hhhccceEEEEcCC
Q 001446 992 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPAL-IPFHSLELRLIDGE 1065 (1075)
Q Consensus 992 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~-i~~~~~~l~l~~g~ 1065 (1075)
+||||||||++||||++++|++|||||||++||.++...+.+.+++ .++|+|+|+|+++. .++.|+++.|.+|.
T Consensus 135 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~ 213 (242)
T cd03295 135 ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGE 213 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 7999999999999999999999999999999999998887766543 38999999999984 57899999998765
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=322.57 Aligned_cols=200 Identities=22% Similarity=0.338 Sum_probs=158.8
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc---CCcCcEEE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIFY 913 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~---~~r~~i~~ 913 (1075)
|+++||++.|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+ ..|.+++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGK-SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCC-eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 578999999975 47999999999999999999999999999999999999999999999999887653 23457999
Q ss_pred EcCCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhC-CchhhhhhhccCCcccccccc
Q 001446 914 VPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGV-RLSYLLEREEVGWDANLNWED 991 (1075)
Q Consensus 914 VpQdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~-~L~~~i~~~~~Gldt~~~~g~ 991 (1075)
+||+|.+|.+ |+++|+.++....... .....+.++++.+ ++.+. ++. ...
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~------------------~~~~~~~~~l~~~~~l~~~-------~~~---~~~ 131 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRA------------------KRKARLERVYELFPRLKER-------RKQ---LAG 131 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCch------------------hHHHHHHHHHHHHHhhhhh-------hhC---chh
Confidence 9999999987 9999997642110000 0011223334433 12111 121 134
Q ss_pred CCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCc-hhhccceEEEEcCC
Q 001446 992 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPAL-IPFHSLELRLIDGE 1065 (1075)
Q Consensus 992 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~-i~~~~~~l~l~~g~ 1065 (1075)
.||||||||++||||++++|++|||||||++||.++...+.+.+++ .++|+|+++|+++. .++.|+++.+.+|.
T Consensus 132 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 209 (222)
T cd03224 132 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGR 209 (222)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCe
Confidence 6999999999999999999999999999999999999888777643 47999999999985 57899999997654
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=324.62 Aligned_cols=196 Identities=24% Similarity=0.319 Sum_probs=165.0
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCC--------ccEEEeCCcCc------c
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV--------SGHIAKPGVGS------D 247 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~--------~G~i~~~~~~~------~ 247 (1075)
|+++|+++.|. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+. .
T Consensus 2 l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 2 LTADHLHVARR-HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred eEEEEEEEEEC-CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 78999999985 468999999999999999999999999999999999999998 99999998641 2
Q ss_pred ccccEEEEcCCCC-CCcCCHHHHhcCCCCCC----cccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHH
Q 001446 248 LNKEIFYVPQRPY-TAVGTLRDQLIYPLTSD----QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 322 (1075)
Q Consensus 248 ~~~~i~~v~Q~~~-~~~~tv~~ni~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkq 322 (1075)
+++.++|+||++. ++..|++||+.++.... ........+.+.++++.+++.+..++.+ .+|||||||
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~q 152 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV--------TTLSGGELA 152 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHHH
Confidence 3456899999986 46689999998753211 0001112345678899999988777655 689999999
Q ss_pred HHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 323 RLGMARLFY---------HKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 323 Rl~lAral~---------~~p~illLDEpts~LD~~~~~~i~~~l~~---~-~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|++|||||+ .+|+++||||||++||+.+.+.+.+.+++ . |+|+|+|||+++.+. .||++++|++
T Consensus 153 rv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~ 230 (272)
T PRK13547 153 RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLAD 230 (272)
T ss_pred HHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999 59999999999999999999999887753 2 789999999999885 7999999986
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=342.87 Aligned_cols=203 Identities=20% Similarity=0.332 Sum_probs=166.4
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEc
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~Vp 915 (1075)
.|+++|+++.|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++......+.+++|||
T Consensus 3 ~l~i~~l~~~~~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAYGD-VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEeCC-eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 4899999999964 569999999999999999999999999999999999999999999999999876644456799999
Q ss_pred CCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCC
Q 001446 916 QRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 994 (1075)
Q Consensus 916 QdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 994 (1075)
|+|.+|+. |+++|+.|+.... +. .....++.+.++++.++|.++..+. ...||
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~----------~~------~~~~~~~~~~~~l~~lgL~~~~~~~----------~~~LS 135 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLA----------GA------KKEEINQRVNQVAEVLQLAHLLDRK----------PKALS 135 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhc----------CC------CHHHHHHHHHHHHHHcCChhhhcCC----------hhhCC
Confidence 99999975 9999998753100 00 0000123456677888875544332 24699
Q ss_pred hhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCC-chhhccceEEEEcCC
Q 001446 995 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 995 gGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls-~i~~~~~~l~l~~g~ 1065 (1075)
||||||++|||||+++|++||||||||+||..+...+.+.+++ .+.|+|+|+|+++ ...+.|+++.|.+|.
T Consensus 136 gGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~ 211 (369)
T PRK11000 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 211 (369)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999998877665532 4899999999997 457899999997764
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=323.02 Aligned_cols=203 Identities=22% Similarity=0.291 Sum_probs=164.4
Q ss_pred eEEeeeeeeCCCc---cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc-----CCc
Q 001446 837 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSG 908 (1075)
Q Consensus 837 I~f~~V~~~yp~~---~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~-----~~r 908 (1075)
|+++|+++.|++. .++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.+||.++...+ ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 6899999999754 27999999999999999999999999999999999999999999999999887542 125
Q ss_pred CcEEEEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc
Q 001446 909 CGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 987 (1075)
Q Consensus 909 ~~i~~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 987 (1075)
.+++|+||+|.+|. .|+++|+.++... .+. ......+.+.++++.+++.+.....
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~----------~~~------~~~~~~~~~~~~l~~~~l~~~~~~~-------- 137 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEI----------AGV------PKAEIEERVLELLELVGLEDKADAY-------- 137 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHH----------cCC------CHHHHHHHHHHHHHHCCChhhhhcC--------
Confidence 67999999999997 6999999753110 000 0000123456677777775443322
Q ss_pred ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEE
Q 001446 988 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLI 1062 (1075)
Q Consensus 988 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~~~~l~l~ 1062 (1075)
...||+|||||++||||++++|++|||||||++||..+...+.+.+++ .++|+|+|+|+++.+ ++.|+++.|.
T Consensus 138 --~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 138 --PAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999888776643 389999999999875 6789999997
Q ss_pred cCC
Q 001446 1063 DGE 1065 (1075)
Q Consensus 1063 ~g~ 1065 (1075)
+|.
T Consensus 216 ~G~ 218 (233)
T cd03258 216 KGE 218 (233)
T ss_pred CCE
Confidence 664
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=325.33 Aligned_cols=197 Identities=26% Similarity=0.321 Sum_probs=162.6
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC-----CccEEEeCCcCc--------c
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS--------D 247 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~--------~ 247 (1075)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+. .
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYG-SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeC-CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 589999999996 46799999999999999999999999999999999999987 499999998541 2
Q ss_pred ccccEEEEcCCCCCCcC-CHHHHhcCCCCCCcc--cCcCCHHHHHHHHHHcCChh----HHhcCCCCcccCCCCCCChhH
Q 001446 248 LNKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGE 320 (1075)
Q Consensus 248 ~~~~i~~v~Q~~~~~~~-tv~~ni~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGq 320 (1075)
++++++|+||++.++.. |++||+.++...... .....++++.++++.+++.. ..++.+ .+|||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~ 154 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYP--------SNLSGGQ 154 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccCh--------hhCCHHH
Confidence 34679999999988865 999999875321110 01112245677888888753 233333 6899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 321 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 321 kqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+. .||++++|++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 223 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYL 223 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEEC
Confidence 9999999999999999999999999999999999888765 3689999999999864 6999999986
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=325.37 Aligned_cols=209 Identities=19% Similarity=0.215 Sum_probs=166.1
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCC---CCCCeEecCCCCCcccc--CCcCc
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP---VVSGSLTKPSQHIDEEA--GSGCG 910 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~---~~sG~I~idg~di~~~~--~~r~~ 910 (1075)
.|+++||++.|++ +++|+|+||+|++||.++|+|+||||||||+++|.|+++ |++|+|.+||.++...+ ..|.+
T Consensus 2 ~~~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYGK-KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEECC-EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 3789999999974 579999999999999999999999999999999999985 68999999999987652 34667
Q ss_pred EEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccc
Q 001446 911 IFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 990 (1075)
Q Consensus 911 i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 990 (1075)
++|+||+|.+|+.|+++|+.++..... . . ......++.+.++++.+++...+... ++ ...
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~----------~---~-~~~~~~~~~~~~~l~~~~l~~~~~~~---~~---~~~ 140 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHG----------M---I-KNKDEEEALVVDCLQKVGLFEEVKDK---LK---QNA 140 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcC----------c---c-cChHHHHHHHHHHHHHcCCChhhhHH---hc---CCc
Confidence 999999999999999999976421000 0 0 00001133456677777774322111 01 124
Q ss_pred cCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCc-hhhccceEEEEcCC
Q 001446 991 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPAL-IPFHSLELRLIDGE 1065 (1075)
Q Consensus 991 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~-i~~~~~~l~l~~g~ 1065 (1075)
..||+|||||++||||++++|++|||||||++||.++...+.+.+++ .++|+|+|+|+++. .++.|+++.|.+|.
T Consensus 141 ~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 218 (246)
T PRK14269 141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE 218 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCE
Confidence 57999999999999999999999999999999999999888777654 48999999999985 56899999997765
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=324.02 Aligned_cols=198 Identities=23% Similarity=0.268 Sum_probs=162.9
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCC--CC---CccEEEeCCcCc--------c
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PL---VSGHIAKPGVGS--------D 247 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~--~~---~~G~i~~~~~~~--------~ 247 (1075)
.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+. +| ++|+|.++|.+. .
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 5 ILQVSDLSVYYN-KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred eEEEEeeEEEEC-CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 689999999996 467999999999999999999999999999999999985 36 599999998531 2
Q ss_pred ccccEEEEcCCCCCCcCCHHHHhcCCCCCCccc-CcCCHHHHHHHHHHcCChh----HHhcCCCCcccCCCCCCChhHHH
Q 001446 248 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQQ 322 (1075)
Q Consensus 248 ~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGqkq 322 (1075)
+++.++|+||+|.++..|++||+.++....... ....++++.++++.+++.. ..++.+ .+|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~~q 155 (252)
T PRK14239 84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSA--------LGLSGGQQQ 155 (252)
T ss_pred hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCc--------ccCCHHHHH
Confidence 356799999999988899999998653211111 1112345667788888743 334433 689999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhH-hhCCeEEEEcCC
Q 001446 323 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 387 (1075)
Q Consensus 323 Rl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~~ 387 (1075)
|++||||++.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+ ..||++++|+++
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDG 223 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999988865 368999999999876 579999999863
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=339.66 Aligned_cols=200 Identities=25% Similarity=0.320 Sum_probs=169.0
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEc
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~Vp 915 (1075)
.|+++|++++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++......+.+++||+
T Consensus 14 ~L~l~~l~~~~~~-~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vf 92 (375)
T PRK09452 14 LVELRGISKSFDG-KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVF 92 (375)
T ss_pred eEEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 5899999999964 569999999999999999999999999999999999999999999999999987654456799999
Q ss_pred CCCCCCCc-chhhhhcCCCCh---HHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccccccc
Q 001446 916 QRPYTCLG-TLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 991 (1075)
Q Consensus 916 QdP~Lf~g-Tir~NL~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 991 (1075)
|++.||+. |+++||.|+... ... ..+..+.++++.++|.++..+.| .
T Consensus 93 Q~~~lfp~ltv~eNi~~~l~~~~~~~~-------------------~~~~~~~~~l~~~~l~~~~~~~p----------~ 143 (375)
T PRK09452 93 QSYALFPHMTVFENVAFGLRMQKTPAA-------------------EITPRVMEALRMVQLEEFAQRKP----------H 143 (375)
T ss_pred cCcccCCCCCHHHHHHHHHhhcCCCHH-------------------HHHHHHHHHHHHcCCchhhhCCh----------h
Confidence 99999975 999999876421 000 01234566778888866655443 4
Q ss_pred CCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCC-chhhccceEEEEcCC
Q 001446 992 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 992 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls-~i~~~~~~l~l~~g~ 1065 (1075)
.||||||||+||||||+++|++||||||||+||..+...+.+.++. .+.|+|.|+|++. ...+.|+++.|.+|.
T Consensus 144 ~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~ 222 (375)
T PRK09452 144 QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGR 222 (375)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999998887766543 4899999999997 467899999998775
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=326.24 Aligned_cols=198 Identities=23% Similarity=0.306 Sum_probs=163.9
Q ss_pred CccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCC-----CCccEEEeCCcCc-------
Q 001446 179 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 246 (1075)
Q Consensus 179 ~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~------- 246 (1075)
...++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 37 ~~~l~i~~l~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 37 ETVIEARDLNVFYG-DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred CceEEEEEEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 45699999999996 4679999999999999999999999999999999999997 6899999998531
Q ss_pred -cccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChh----HHhcCCCCcccCCCCCCChhHH
Q 001446 247 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 321 (1075)
Q Consensus 247 -~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGqk 321 (1075)
.+++.++|+||++.++..|++||+.++...... .....+++.++++.+++.. ..++.+ .+||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~--------~~LSgGe~ 186 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGY-DGDIDERVEESLRRAALWDEVKDQLDSSG--------LDLSGGQQ 186 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCC-cHHHHHHHHHHHHHcCCCchhHHHHhCCc--------ccCCHHHH
Confidence 235679999999988878999999865321111 1112346778888888853 344443 68999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChhhHh-hCCeEE-EEcC
Q 001446 322 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVL-SLDG 386 (1075)
Q Consensus 322 qRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~vtH~~~~~~-~~d~i~-~l~~ 386 (1075)
||++|||||+.+|++|||||||++||+.+.+.+.+.+++. +.|+|++||+++.+. .+|+++ ++++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~ 255 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTG 255 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeC
Confidence 9999999999999999999999999999999998888653 579999999999875 699976 4564
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=320.89 Aligned_cols=195 Identities=27% Similarity=0.394 Sum_probs=165.7
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc----cccccEEEEcC
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----DLNKEIFYVPQ 257 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~----~~~~~i~~v~Q 257 (1075)
|+++|+++.|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|+||
T Consensus 1 l~~~~l~~~~~~--~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 1 LKVENLSKDWKE--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred CeeEeEEEEeCC--ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence 468999999863 389999999999999999999999999999999999999999999999641 12467999999
Q ss_pred CCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCE
Q 001446 258 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 336 (1075)
Q Consensus 258 ~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~i 336 (1075)
++.++. .|+.||+.++............+++.++++.+++.+..++.+ .+||||||||++||||++.+|++
T Consensus 79 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP--------ETLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred cCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc--------ccCCHHHHHHHHHHHHHHcCCCE
Confidence 998775 699999987532211111112345678899999998888876 68999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 337 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 337 llLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
++|||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|++++|++
T Consensus 151 lllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~ 205 (235)
T cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLN 205 (235)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 999999999999999999887764 2899999999999875 6999999986
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=332.41 Aligned_cols=200 Identities=22% Similarity=0.233 Sum_probs=163.1
Q ss_pred eEEeeeeeeCCCc----cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc------cC
Q 001446 837 ISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE------AG 906 (1075)
Q Consensus 837 I~f~~V~~~yp~~----~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~------~~ 906 (1075)
|+++||+++|++. .++|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.++... ..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999752 4699999999999999999999999999999999999999999999999988531 23
Q ss_pred CcCcEEEEcCCC--CCCCcchhhhhcCCCC---hHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCch-hhhhhhc
Q 001446 907 SGCGIFYVPQRP--YTCLGTLRDQIIYPLS---REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLEREE 980 (1075)
Q Consensus 907 ~r~~i~~VpQdP--~Lf~gTir~NL~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~-~~i~~~~ 980 (1075)
.|.+++||||+| .+|+.|+++||.++.. .+.. ...+.+.++++.++|. .+...
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~-------------------~~~~~~~~~l~~~gL~~~~~~~-- 141 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEE-------------------DAKQKAREMIELVGLPEELLAR-- 141 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHH-------------------HHHHHHHHHHHHCCCChhhhhC--
Confidence 456799999998 6888999999976311 0000 0112345667777774 22211
Q ss_pred cCCccccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhc
Q 001446 981 VGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFH 1055 (1075)
Q Consensus 981 ~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~ 1055 (1075)
....||||||||++|||||+.+|++|||||||++||+.+...+.+++++ .|.|||+|+|+++.+ ++.
T Consensus 142 --------~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~ 213 (290)
T PRK13634 142 --------SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYA 213 (290)
T ss_pred --------CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 1356999999999999999999999999999999999999887776643 389999999999865 789
Q ss_pred cceEEEEcCC
Q 001446 1056 SLELRLIDGE 1065 (1075)
Q Consensus 1056 ~~~l~l~~g~ 1065 (1075)
|+++.|.+|.
T Consensus 214 drv~~l~~G~ 223 (290)
T PRK13634 214 DQIVVMHKGT 223 (290)
T ss_pred CEEEEEECCE
Confidence 9999998775
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=323.03 Aligned_cols=198 Identities=23% Similarity=0.257 Sum_probs=163.4
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCC--C---CccEEEeCCcCc--------
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVGS-------- 246 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~--~---~~G~i~~~~~~~-------- 246 (1075)
+.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 3 ~~l~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFG-KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 4689999999996 4679999999999999999999999999999999999986 4 689999998541
Q ss_pred cccccEEEEcCCCCCCc-CCHHHHhcCCCCCCccc-CcCCHHHHHHHHHHcCChhH----HhcCCCCcccCCCCCCChhH
Q 001446 247 DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGE 320 (1075)
Q Consensus 247 ~~~~~i~~v~Q~~~~~~-~tv~~ni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~g~~LSgGq 320 (1075)
.+++.++|+||++.++. .|++||+.++....... ....++++.++++.+++... .++. ..+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~G~ 153 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSN--------AMELSGGQ 153 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCC--------cCcCCHHH
Confidence 23567999999998877 59999998653211110 11123456778888888542 2332 26899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 321 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 321 kqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|||++|||||+.+|+++||||||++||+.+.+.+.+.+++. ++|+|++||+++.+ ..||++++|++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~ 222 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYM 222 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEEC
Confidence 99999999999999999999999999999999998887653 68999999999987 57999999986
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=323.16 Aligned_cols=197 Identities=22% Similarity=0.274 Sum_probs=162.7
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCC---CCC--CccEEEeCCcCc--------c
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL---WPL--VSGHIAKPGVGS--------D 247 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~---~~~--~~G~i~~~~~~~--------~ 247 (1075)
.++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+ .+| ++|+|.++|.+. .
T Consensus 3 ~l~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 3 KIDARDVNFWYGD-FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred EEEEEEEEEEECC-EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 6899999999964 6799999999999999999999999999999999997 454 589999998641 2
Q ss_pred ccccEEEEcCCCCCCcCCHHHHhcCCCCCCccc-CcCCHHHHHHHHHHcCChhH----HhcCCCCcccCCCCCCChhHHH
Q 001446 248 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 322 (1075)
Q Consensus 248 ~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~g~~LSgGqkq 322 (1075)
.++.++|+||++.++..|++||+.++....... .....+++.++++.+++.+. .++.+ .+|||||||
T Consensus 82 ~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~~q 153 (250)
T PRK14245 82 LRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESA--------FALSGGQQQ 153 (250)
T ss_pred HhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCc--------ccCCHHHHH
Confidence 345799999999888889999998753211100 11123456778888888542 33333 689999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 323 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 323 Rl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+ ..||++++|++
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~ 220 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYM 220 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEEC
Confidence 99999999999999999999999999999999988865 378999999999987 56999999986
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=318.71 Aligned_cols=202 Identities=20% Similarity=0.195 Sum_probs=162.4
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc-cCCcCcEEEEc
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYVP 915 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~-~~~r~~i~~Vp 915 (1075)
|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++... ...+.+++|+|
T Consensus 1 i~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYGD-FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEECC-EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 578999998865 5799999999999999999999999999999999999999999999999887643 22355799999
Q ss_pred CCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCC
Q 001446 916 QRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 994 (1075)
Q Consensus 916 QdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 994 (1075)
|+|.+|.+ |+++|+.++... .+.. ....++.+.++++.++|.+..... ...||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS 133 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARL----------YGVP------GAERRERIDELLDFVGLLEAADRL----------VKTYS 133 (220)
T ss_pred CCccccccCcHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHcCCHHHhhCC----------hhhCC
Confidence 99998875 999999753100 0000 000133456777888775443322 24699
Q ss_pred hhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 995 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 995 gGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
||||||++||||++.+|++|||||||++||.++...+.+.+++ .++|+|+|+|+++.+ .+.|+++.+.+|.
T Consensus 134 ~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 134 GGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999998887776543 388999999999865 5799999997664
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=332.91 Aligned_cols=200 Identities=19% Similarity=0.208 Sum_probs=162.3
Q ss_pred eEEeeeeeeCCCc----cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcc---------
Q 001446 837 ISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE--------- 903 (1075)
Q Consensus 837 I~f~~V~~~yp~~----~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~--------- 903 (1075)
|+++||++.|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 7899999999753 369999999999999999999999999999999999999999999999876531
Q ss_pred -----------------ccCCcCcEEEEcCCC--CCCCcchhhhhcCCCC---hHHHHHHHhhhcCCCcccccccccchH
Q 001446 904 -----------------EAGSGCGIFYVPQRP--YTCLGTLRDQIIYPLS---REEAELRALKLHGKGEKLVDTTNILDS 961 (1075)
Q Consensus 904 -----------------~~~~r~~i~~VpQdP--~Lf~gTir~NL~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~d~ 961 (1075)
....|.+++||||+| .+|..|+++||.++.. ...+ ..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~-------------------~~~~ 143 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKE-------------------EAKK 143 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHH-------------------HHHH
Confidence 112356799999987 6888899999986421 0000 0123
Q ss_pred HHHHHHHhCCch-hhhhhhccCCccccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---
Q 001446 962 YLKTILEGVRLS-YLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--- 1037 (1075)
Q Consensus 962 ~i~~~l~~~~L~-~~i~~~~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--- 1037 (1075)
.+.++++.++|. +...+. ...||||||||++|||||+.+|++|||||||++||......+.+.+++
T Consensus 144 ~~~~~l~~~gL~~~~~~~~----------~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~ 213 (305)
T PRK13651 144 RAAKYIELVGLDESYLQRS----------PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK 213 (305)
T ss_pred HHHHHHHHcCCChhhhhCC----------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 455677777774 232221 356999999999999999999999999999999999998887766543
Q ss_pred cCceEEEecCCCC-chhhccceEEEEcCC
Q 001446 1038 MGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1038 ~~~TvI~IaHRls-~i~~~~~~l~l~~g~ 1065 (1075)
.|+|||+|+|+++ ..++.|+++.|.+|.
T Consensus 214 ~g~tiiivtHd~~~~~~~adrv~vl~~G~ 242 (305)
T PRK13651 214 QGKTIILVTHDLDNVLEWTKRTIFFKDGK 242 (305)
T ss_pred CCCEEEEEeeCHHHHHHhCCEEEEEECCE
Confidence 4899999999997 558999999998774
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=320.54 Aligned_cols=200 Identities=28% Similarity=0.353 Sum_probs=158.8
Q ss_pred eEEeeeeeeCCCc---cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc-----CCc
Q 001446 837 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSG 908 (1075)
Q Consensus 837 I~f~~V~~~yp~~---~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~-----~~r 908 (1075)
|+++||++.|++. .++|+|+||+|++||.+||+||||||||||+++|.|+++|.+|+|.++|.++...+ ..|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 6899999999754 37999999999999999999999999999999999999999999999999887643 345
Q ss_pred CcEEEEcCCC--CCC-CcchhhhhcCCCC-----hHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCch-hhhhhh
Q 001446 909 CGIFYVPQRP--YTC-LGTLRDQIIYPLS-----REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLERE 979 (1075)
Q Consensus 909 ~~i~~VpQdP--~Lf-~gTir~NL~~p~~-----~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~-~~i~~~ 979 (1075)
.+++|+||+| .++ ..|+++|+.++.. ..+... +....++++.+++. .....
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~-------------------~~~~~~~l~~~~l~~~~~~~- 141 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR-------------------KEAVLLLLVGVGLPEEVLNR- 141 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHH-------------------HHHHHHHHHHCCCChhHhhC-
Confidence 6799999999 344 5799999964210 000000 00012455666552 22211
Q ss_pred ccCCccccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---c-CceEEEecCCCCchh-h
Q 001446 980 EVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---M-GITFVTSSQRPALIP-F 1054 (1075)
Q Consensus 980 ~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~-~~TvI~IaHRls~i~-~ 1054 (1075)
....||||||||++||||++++|+||||||||++||.++...+.+.+++ . ++|+|+|+|+++.+. +
T Consensus 142 ---------~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 212 (228)
T cd03257 142 ---------YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKI 212 (228)
T ss_pred ---------CchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 1356999999999999999999999999999999999999888776643 2 899999999998776 8
Q ss_pred ccceEEEEcCC
Q 001446 1055 HSLELRLIDGE 1065 (1075)
Q Consensus 1055 ~~~~l~l~~g~ 1065 (1075)
.|+++.|.+|.
T Consensus 213 ~d~i~~l~~G~ 223 (228)
T cd03257 213 ADRVAVMYAGK 223 (228)
T ss_pred cCeEEEEeCCE
Confidence 99999997653
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=318.22 Aligned_cols=196 Identities=24% Similarity=0.292 Sum_probs=159.9
Q ss_pred EEEEeEEEEcCC------CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCC--c--Cc-----
Q 001446 182 IEFSGVKVVTPT------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG--V--GS----- 246 (1075)
Q Consensus 182 i~~~~v~~~~~~------~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~--~--~~----- 246 (1075)
++++|+++.|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| . +.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999953 24799999999999999999999999999999999999999999999973 2 20
Q ss_pred ----cc-cccEEEEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHH-hcCCCCcccCCCCCCChh
Q 001446 247 ----DL-NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL-DRYPPEKEINWGDELSLG 319 (1075)
Q Consensus 247 ----~~-~~~i~~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~g~~LSgG 319 (1075)
.. ++.++|+||+|.++. .|++||+.++............+++.++++.+++.+.. ++.+ .+||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G 153 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPP--------ATFSGG 153 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCc--------ccCCHH
Confidence 01 346999999997765 59999997643211111111234567788999987643 4433 689999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEc
Q 001446 320 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLD 385 (1075)
Q Consensus 320 qkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~ 385 (1075)
||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+.+.+. .||+++.+.
T Consensus 154 ~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 154 EQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 99999999999999999999999999999999999888764 4889999999999885 799998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=336.23 Aligned_cols=187 Identities=24% Similarity=0.327 Sum_probs=162.6
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc----------ccccc
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKE 251 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~----------~~~~~ 251 (1075)
|++ |+++.|.+ + .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..+++
T Consensus 2 l~~-~l~k~~~~-~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 2 LEL-NFKQQLGD-L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred eEE-EEEEEeCC-E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 667 89998853 3 33 89999999999999999999999999999999999999999998531 13567
Q ss_pred EEEEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHH
Q 001446 252 IFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 330 (1075)
Q Consensus 252 i~~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral 330 (1075)
++|+||++.+++ .|++||+.++... ...+++.++++.+++.+..++.| .+||||||||++|||||
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGq~qRvalaraL 143 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAK------SMVAQFDKIVALLGIEPLLDRYP--------GSLSGGEKQRVAIGRAL 143 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhh------hhHHHHHHHHHHcCCchhhhCCc--------ccCCHHHHHHHHHHHHH
Confidence 999999998876 5999999986431 23456788999999998888877 68999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 331 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 331 ~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
+.+|+++||||||++||+.+++.+.+.+++ .|+|+|+||||++.+ ..||++++|++
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~ 204 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQ 204 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999998887753 378999999999876 56999999986
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=341.11 Aligned_cols=204 Identities=19% Similarity=0.259 Sum_probs=168.5
Q ss_pred CceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEE
Q 001446 835 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 914 (1075)
Q Consensus 835 g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~V 914 (1075)
..|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++......+.+++||
T Consensus 18 ~~l~l~~v~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 96 (377)
T PRK11607 18 PLLEIRNLTKSFDG-QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM 96 (377)
T ss_pred ceEEEEeEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 35999999999864 57999999999999999999999999999999999999999999999999988765556679999
Q ss_pred cCCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCC
Q 001446 915 PQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 993 (1075)
Q Consensus 915 pQdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~L 993 (1075)
+|+|.||+. |+++||.|+...... ......+.+.++++.++|.++.++. ...|
T Consensus 97 fQ~~~lfp~ltv~eNi~~~l~~~~~----------------~~~~~~~~v~~~l~~l~L~~~~~~~----------~~~L 150 (377)
T PRK11607 97 FQSYALFPHMTVEQNIAFGLKQDKL----------------PKAEIASRVNEMLGLVHMQEFAKRK----------PHQL 150 (377)
T ss_pred eCCCccCCCCCHHHHHHHHHHHcCC----------------CHHHHHHHHHHHHHHcCCchhhcCC----------hhhC
Confidence 999999975 999999986421000 0000123456777888876554443 2469
Q ss_pred ChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHH----HhcCceEEEecCCCC-chhhccceEEEEcCC
Q 001446 994 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLA----KDMGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 994 SgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~----~~~~~TvI~IaHRls-~i~~~~~~l~l~~g~ 1065 (1075)
|||||||+||||||+++|++|+||||||+||..+...+.+.+ ++.+.|+|.|+|+++ ...+.|+++.|.+|.
T Consensus 151 SgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~ 227 (377)
T PRK11607 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGK 227 (377)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999987765433 345899999999997 468999999997664
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=325.84 Aligned_cols=199 Identities=21% Similarity=0.217 Sum_probs=162.2
Q ss_pred CccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCC-----CCccEEEeCCcCc-------
Q 001446 179 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 246 (1075)
Q Consensus 179 ~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~------- 246 (1075)
...++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 22 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 22 KVVFDTQNLNLWYG-EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred ceEEEEeeeEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 34799999999996 4579999999999999999999999999999999999987 6999999998531
Q ss_pred -cccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccC-cCCHHHHHHHHHHcCCh----hHHhcCCCCcccCCCCCCChhH
Q 001446 247 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGE 320 (1075)
Q Consensus 247 -~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~-~~~~~~~~~~l~~~~l~----~~~~~~~~~~~~~~g~~LSgGq 320 (1075)
.+++.++|+||+|.++..|++||+.++........ ......+.++++.+++. +..++.+ .+|||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--------~~LSgGe 172 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNA--------YGLSGGQ 172 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCc--------ccCCHHH
Confidence 23567999999999888899999987532111100 01123345666666542 3333333 6899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 321 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 321 kqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+. .||++++|++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~ 241 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLN 241 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999888765 3789999999999875 6999999986
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=327.84 Aligned_cols=203 Identities=19% Similarity=0.183 Sum_probs=165.7
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc---CCcCcEEE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIFY 913 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~---~~r~~i~~ 913 (1075)
|+++||++.|++.+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++...+ .++.+++|
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 689999999976567999999999999999999999999999999999999999999999999887542 34567999
Q ss_pred EcCCCC--CCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccccccc
Q 001446 914 VPQRPY--TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 991 (1075)
Q Consensus 914 VpQdP~--Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 991 (1075)
|||+|. ++..|+++||.++.... +. .....++.+.++++.++|.+..... ..
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~----------~~------~~~~~~~~~~~~l~~~gl~~~~~~~----------~~ 135 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENL----------CL------PPIEIRKRVDRALAEIGLEKYRHRS----------PK 135 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHc----------CC------CHHHHHHHHHHHHHHCCCHHHhcCC----------cc
Confidence 999985 56789999997642100 00 0000123455667777775443322 34
Q ss_pred CCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 992 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 992 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
.||+|||||++|||||+++|+||||||||++||+.+...+.+.+++ .|+|+|+++|+++.+...|+++.+.+|.
T Consensus 136 ~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~ 212 (274)
T PRK13644 136 TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGK 212 (274)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCE
Confidence 6999999999999999999999999999999999998887776643 4899999999999889999999997765
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=319.44 Aligned_cols=203 Identities=22% Similarity=0.251 Sum_probs=164.8
Q ss_pred ceEEeeeeeeCCCc---cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccC------
Q 001446 836 SISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG------ 906 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~---~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~------ 906 (1075)
.|+++||++.|++. .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+.
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 58999999999753 369999999999999999999999999999999999999999999999998876421
Q ss_pred CcCcEEEEcCCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcc
Q 001446 907 SGCGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 985 (1075)
Q Consensus 907 ~r~~i~~VpQdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 985 (1075)
.+.+++|+||+|.+|.+ |+++|+.++..... . ......+.+.++++.+++.+.....
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~----------~------~~~~~~~~~~~~l~~~~l~~~~~~~------ 143 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRG----------E------SSRQSRNGAKALLEQLGLGKRLDHL------ 143 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcC----------C------CHHHHHHHHHHHHHHcCCHhHhhCC------
Confidence 23569999999999885 99999975311000 0 0001123456677777775544332
Q ss_pred ccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCchhhccceEEE
Q 001446 986 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRL 1061 (1075)
Q Consensus 986 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i~~~~~~l~l 1061 (1075)
...||||||||++|||||+++|++|||||||++||.++...+.+.+++ .+.|||+|+|+++.+...|+++.+
T Consensus 144 ----~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l 219 (228)
T PRK10584 144 ----PAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRL 219 (228)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE
Confidence 246999999999999999999999999999999999998887776632 378999999999988889999999
Q ss_pred EcC
Q 001446 1062 IDG 1064 (1075)
Q Consensus 1062 ~~g 1064 (1075)
.+|
T Consensus 220 ~~g 222 (228)
T PRK10584 220 VNG 222 (228)
T ss_pred ECC
Confidence 765
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=321.89 Aligned_cols=198 Identities=23% Similarity=0.249 Sum_probs=163.3
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCC-----ccEEEeCCcCc--------c
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVGS--------D 247 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~-----~G~i~~~~~~~--------~ 247 (1075)
.++++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.+. .
T Consensus 4 ~l~~~~l~~~~~-~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 4 KIKIRGVNFFYH-KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred eEEEEEEEEEEC-CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 589999999996 467999999999999999999999999999999999999987 69999998541 2
Q ss_pred ccccEEEEcCCCCCCcCCHHHHhcCCCCCCccc-CcCCHHHHHHHHHHcCChhH----HhcCCCCcccCCCCCCChhHHH
Q 001446 248 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 322 (1075)
Q Consensus 248 ~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~g~~LSgGqkq 322 (1075)
+++.++|+||+|.++..|++||+.++....... ....++.+.++++.+++.+. .++. ..+|||||||
T Consensus 83 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~Gq~q 154 (251)
T PRK14249 83 LRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKS--------GLALSGGQQQ 154 (251)
T ss_pred hhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCC--------cccCCHHHHH
Confidence 356799999999988889999998764221110 11122445667777777532 3333 3689999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHh-hCCeEEEEcCC
Q 001446 323 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 387 (1075)
Q Consensus 323 Rl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~~ 387 (1075)
|++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+. .||++++|+++
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G 222 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTG 222 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCC
Confidence 99999999999999999999999999999998887764 3789999999999875 58999999863
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=322.57 Aligned_cols=197 Identities=21% Similarity=0.246 Sum_probs=162.7
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC-----CccEEEeCCcCc--------c
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS--------D 247 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~--------~ 247 (1075)
.++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+. .
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFYG-DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEEC-CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 589999999996 45799999999999999999999999999999999999763 699999998641 2
Q ss_pred ccccEEEEcCCCCCCcCCHHHHhcCCCCCCccc-CcCCHHHHHHHHHHcCChh----HHhcCCCCcccCCCCCCChhHHH
Q 001446 248 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQQ 322 (1075)
Q Consensus 248 ~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGqkq 322 (1075)
+++.++|+||++.++..|+++|+.++....... ....++++.++++.+++.+ ..++.+ .+|||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LS~G~~q 153 (250)
T PRK14240 82 LRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSA--------LGLSGGQQQ 153 (250)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCC--------CCCCHHHHH
Confidence 356799999999888899999998753211110 1112345667788888753 233333 689999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 323 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 323 Rl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+ ..+|+++++++
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~ 220 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLN 220 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEEC
Confidence 99999999999999999999999999999999888764 378999999999976 46999999986
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=323.86 Aligned_cols=197 Identities=23% Similarity=0.277 Sum_probs=162.3
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC-----CccEEEeCCcCc--------c
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS--------D 247 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~--------~ 247 (1075)
.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+. .
T Consensus 4 ~l~i~~v~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYGS-FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEECC-EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 5899999999964 5799999999999999999999999999999999999974 799999998541 2
Q ss_pred ccccEEEEcCCCCCCc-CCHHHHhcCCCCCCcc-cCcCCHHHHHHHHHHcCCh----hHHhcCCCCcccCCCCCCChhHH
Q 001446 248 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQ 321 (1075)
Q Consensus 248 ~~~~i~~v~Q~~~~~~-~tv~~ni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~~~~~g~~LSgGqk 321 (1075)
+++.++|++|++.++. .|++||+.++...... .....++.+.++++.+++. +..++.+ .+||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~~ 154 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPG--------GGLSGGQQ 154 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCc--------ccCCHHHH
Confidence 3467999999998776 5999999865321111 0111234567788888884 2334433 68999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 322 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 322 qRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+ ..||+++++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~ 222 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNL 222 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEec
Confidence 999999999999999999999999999999999888764 368999999999987 57999999973
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=325.09 Aligned_cols=203 Identities=21% Similarity=0.259 Sum_probs=164.5
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc-----------
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA----------- 905 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~----------- 905 (1075)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+
T Consensus 1 i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFGI-LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeCC-eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 579999999975 57999999999999999999999999999999999999999999999999886432
Q ss_pred ----CCcCcEEEEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhc
Q 001446 906 ----GSGCGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREE 980 (1075)
Q Consensus 906 ----~~r~~i~~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~ 980 (1075)
..|.++++|||+|.+|. .|+++|+.++.... .+. .....++.+.++++.+++.+.....
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~---------~~~------~~~~~~~~~~~~l~~~gl~~~~~~~- 143 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV---------LGM------ARAEAEKRAMELLDMVGLADKADHM- 143 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh---------cCC------CHHHHHHHHHHHHHHcCChhHhhcC-
Confidence 23567999999999885 79999997531000 000 0001134456777877775544332
Q ss_pred cCCccccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhc
Q 001446 981 VGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFH 1055 (1075)
Q Consensus 981 ~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~ 1055 (1075)
...||||||||++||||++++|+++||||||++||..+...+.+.+++ .++|+|+|+|++..+ ++.
T Consensus 144 ---------~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~ 214 (252)
T TIGR03005 144 ---------PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFA 214 (252)
T ss_pred ---------hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhc
Confidence 356999999999999999999999999999999999998887776643 389999999999876 689
Q ss_pred cceEEEEcCC
Q 001446 1056 SLELRLIDGE 1065 (1075)
Q Consensus 1056 ~~~l~l~~g~ 1065 (1075)
|+++.|.+|.
T Consensus 215 d~i~~l~~G~ 224 (252)
T TIGR03005 215 DRVCFFDKGR 224 (252)
T ss_pred CEEEEEECCE
Confidence 9999998765
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=302.29 Aligned_cols=160 Identities=31% Similarity=0.469 Sum_probs=144.1
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----ccccccEEEEc
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 256 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v~ 256 (1075)
++++|+++.|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+|
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 468999999864 579999999999999999999999999999999999999999999999864 13456899999
Q ss_pred CCCCCCcC-CHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCC
Q 001446 257 QRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 335 (1075)
Q Consensus 257 Q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~ 335 (1075)
|+|.++.. |++||+. ||||||||++|||||+.+|+
T Consensus 80 q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 80 EEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred cCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99987765 8888863 89999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 336 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 336 illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
++||||||++||+.+...+.+.+++ .|.|+|++||+.+.+. .+|++++|++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~ 170 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNN 170 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999888764 3789999999999876 7999999975
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=327.95 Aligned_cols=204 Identities=23% Similarity=0.323 Sum_probs=167.1
Q ss_pred ceEEeeeeeeCCC-ccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEE
Q 001446 836 SISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIF 912 (1075)
Q Consensus 836 ~I~f~~V~~~yp~-~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~ 912 (1075)
-|+++||++.|++ .+++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+ ..+.+|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 4899999999975 467999999999999999999999999999999999999999999999999987652 2456799
Q ss_pred EEcCCC--CCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccc
Q 001446 913 YVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 990 (1075)
Q Consensus 913 ~VpQdP--~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 990 (1075)
|+||+| .++..|+++||.++.... +. .....++.+.++++.++|.+..... .
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~----------~~------~~~~~~~~~~~~l~~~gL~~~~~~~----------~ 138 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENI----------GV------PREEMVERVDQALRQVGMEDFLNRE----------P 138 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhC----------CC------CHHHHHHHHHHHHHHcCChhhhhCC----------c
Confidence 999999 567789999998642100 00 0000123456677777776554433 2
Q ss_pred cCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 991 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 991 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
..||||||||++|||||+++|+||||||||++||..+...+.+.+++ .++|+|+|+|++..+...|+++.|.+|.
T Consensus 139 ~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~ 217 (279)
T PRK13635 139 HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGE 217 (279)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCE
Confidence 46999999999999999999999999999999999999888777643 3899999999999888899999997664
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=339.50 Aligned_cols=207 Identities=19% Similarity=0.257 Sum_probs=169.2
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEE
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFY 913 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~ 913 (1075)
-|+++||++.|++ +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++...+ .++++|++
T Consensus 3 ~L~~~nls~~y~~-~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFGD-TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEECC-EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 3889999999974 67999999999999999999999999999999999999999999999999988753 34667999
Q ss_pred EcCCCCC-CCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccC
Q 001446 914 VPQRPYT-CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 992 (1075)
Q Consensus 914 VpQdP~L-f~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 992 (1075)
|||+|.+ |+.|+++|+.++...... .........++.+.++++.+++.++.++. ...
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~------------~~~~~~~~~~~~v~~~le~vgl~~~~~~~----------~~~ 139 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRS------------RFDTWTETDRAAVERAMERTGVAQFADRP----------VTS 139 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcc------------cccCCCHHHHHHHHHHHHHcCCchhhcCC----------hhh
Confidence 9999987 678999999864311000 00000111234567788888886654332 346
Q ss_pred CChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
||||||||++|||||+++|+||||||||++||..+...+.+++++ .+.|+|+++|+++.+ ++.|+++.|.+|.
T Consensus 140 LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~ 216 (402)
T PRK09536 140 LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGR 216 (402)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999998887776543 488999999999877 7899999997765
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=305.64 Aligned_cols=165 Identities=31% Similarity=0.481 Sum_probs=149.1
Q ss_pred eEEeeeeeeCCCc-cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEE
Q 001446 837 ISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFY 913 (1075)
Q Consensus 837 I~f~~V~~~yp~~-~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~ 913 (1075)
|+++|++++|++. .++++|+||+|++||.++|+|++|||||||+++|.|+++|.+|+|.+||.++...+ ..|.+++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 5789999999853 57999999999999999999999999999999999999999999999999887652 34567999
Q ss_pred EcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCC
Q 001446 914 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 993 (1075)
Q Consensus 914 VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~L 993 (1075)
++|+|.+|++|+++|+ |
T Consensus 81 ~~q~~~~~~~tv~~~l---------------------------------------------------------------L 97 (173)
T cd03246 81 LPQDDELFSGSIAENI---------------------------------------------------------------L 97 (173)
T ss_pred ECCCCccccCcHHHHC---------------------------------------------------------------c
Confidence 9999999988888876 3
Q ss_pred ChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCchhhccceEEEEcC
Q 001446 994 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIPFHSLELRLIDG 1064 (1075)
Q Consensus 994 SgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i~~~~~~l~l~~g 1064 (1075)
|||||||++||||++++|++|||||||++||..+...+.+.++. .++|+|+|+|++..+.+.|+++.+.+|
T Consensus 98 S~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G 171 (173)
T cd03246 98 SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDG 171 (173)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999888776643 488999999999988999999999765
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=318.77 Aligned_cols=193 Identities=25% Similarity=0.391 Sum_probs=163.9
Q ss_pred CCccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCccccccEEEEcC
Q 001446 178 EANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 257 (1075)
Q Consensus 178 ~~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q 257 (1075)
..+.|+++|+++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 36 ~~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------~i~yv~q 105 (282)
T cd03291 36 DDNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------RISFSSQ 105 (282)
T ss_pred CCCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------EEEEEeC
Confidence 3457999999985 35799999999999999999999999999999999999999999999987 5999999
Q ss_pred CCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCccc---CCCCCCChhHHHHHHHHHHHcCCC
Q 001446 258 RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKP 334 (1075)
Q Consensus 258 ~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqRl~lAral~~~p 334 (1075)
+++++..|++||+.++... ...++.+.++.+++.+.++..+..... ..+.+||||||||++|||||+.+|
T Consensus 106 ~~~l~~~tv~enl~~~~~~-------~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p 178 (282)
T cd03291 106 FSWIMPGTIKENIIFGVSY-------DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDA 178 (282)
T ss_pred cccccccCHHHHhhccccc-------CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999889999999875321 122445667778888777766543211 234689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHH-H--hcCCeEEEEecChhhHhhCCeEEEEcCC
Q 001446 335 KFAILDECTSAVTTDMEERFCAKV-R--AMGTSCITISHRPALVAFHDVVLSLDGE 387 (1075)
Q Consensus 335 ~illLDEpts~LD~~~~~~i~~~l-~--~~~~t~i~vtH~~~~~~~~d~i~~l~~~ 387 (1075)
+++||||||++||+.+...+.+.+ + ..+.|+|++||+++.+..||++++|+++
T Consensus 179 ~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G 234 (282)
T cd03291 179 DLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234 (282)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECC
Confidence 999999999999999999887643 2 2478999999999999899999999863
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=323.81 Aligned_cols=207 Identities=23% Similarity=0.252 Sum_probs=163.9
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCC-----CCeEecCCCCCccc----cCC
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVV-----SGSLTKPSQHIDEE----AGS 907 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~-----sG~I~idg~di~~~----~~~ 907 (1075)
|+++||++.|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|. +|+|.+||.++... ...
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 2 IEIENLNLFYGE-KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEEEECC-eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 789999999975 46999999999999999999999999999999999999988 99999999988652 234
Q ss_pred cCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc
Q 001446 908 GCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 987 (1075)
Q Consensus 908 r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 987 (1075)
+.+++||||+|.+|+.|+++|+.++.... +. . .....++.+.++++.+++...+.. -++.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~----------~~---~--~~~~~~~~~~~~l~~~~l~~~~~~---~~~~-- 140 (247)
T TIGR00972 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLH----------GI---K--DKKELDEIVEESLKKAALWDEVKD---RLHD-- 140 (247)
T ss_pred HhheEEEecCcccCCCCHHHHHHhHHHhc----------CC---C--CHHHHHHHHHHHHHHcCCCcchhh---HhhC--
Confidence 56799999999999999999997532100 00 0 000112345667777777522100 0111
Q ss_pred ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCc-hhhccceEEEEcC
Q 001446 988 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPAL-IPFHSLELRLIDG 1064 (1075)
Q Consensus 988 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~-i~~~~~~l~l~~g 1064 (1075)
....||||||||++|||||+++|+++||||||++||..+...+.+.+++ .++|+|+|+|+++. .++.|+++.|.+|
T Consensus 141 -~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 219 (247)
T TIGR00972 141 -SALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDG 219 (247)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECC
Confidence 1356999999999999999999999999999999999999888777654 35899999999985 4789999999876
Q ss_pred C
Q 001446 1065 E 1065 (1075)
Q Consensus 1065 ~ 1065 (1075)
.
T Consensus 220 ~ 220 (247)
T TIGR00972 220 E 220 (247)
T ss_pred E
Confidence 5
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=332.67 Aligned_cols=198 Identities=19% Similarity=0.284 Sum_probs=162.5
Q ss_pred cEEEEeEEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCC----CCccEEEeCCcCc------c
Q 001446 181 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP----LVSGHIAKPGVGS------D 247 (1075)
Q Consensus 181 ~i~~~~v~~~~~~---~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~----~~~G~i~~~~~~~------~ 247 (1075)
.|+++|+++.|+. ...+|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.+. .
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999953 3469999999999999999999999999999999999986 5899999999641 1
Q ss_pred ----ccccEEEEcCCCCC---CcCCHHHHhcCCCCC---Ccc---cCcCCHHHHHHHHHHcCChh---HHhcCCCCcccC
Q 001446 248 ----LNKEIFYVPQRPYT---AVGTLRDQLIYPLTS---DQE---VEPLTHGGMVELLKNVDLEY---LLDRYPPEKEIN 311 (1075)
Q Consensus 248 ----~~~~i~~v~Q~~~~---~~~tv~~ni~~~~~~---~~~---~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~~~ 311 (1075)
.++.|+||||+|.. +..|+.+|+..+... ... ......+++.++++.++|.+ ..+++|
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p------ 156 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP------ 156 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc------
Confidence 12479999999963 335899998653210 000 00112356788999999974 356666
Q ss_pred CCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 312 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 312 ~g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.+++ .|.|+|+||||++.+. .||+|++|++
T Consensus 157 --~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 157 --YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred --hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 68999999999999999999999999999999999999999887764 3899999999999985 6999999986
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=318.53 Aligned_cols=203 Identities=26% Similarity=0.344 Sum_probs=165.4
Q ss_pred eEEeeeeeeCCCc---cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc-----CCc
Q 001446 837 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSG 908 (1075)
Q Consensus 837 I~f~~V~~~yp~~---~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~-----~~r 908 (1075)
++++||++.|++. +++|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999998742 67999999999999999999999999999999999999999999999999887543 235
Q ss_pred CcEEEEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc
Q 001446 909 CGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 987 (1075)
Q Consensus 909 ~~i~~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 987 (1075)
..++|+||+|.+|. .|+.+|+.++....+. . .....+..+.++++.+++.+.....
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~-~--------------~~~~~~~~~~~~l~~~~l~~~~~~~-------- 138 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPN-L--------------SYQEARERARAMLEAVGLGDHLDYY-------- 138 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccC-C--------------CHHHHHHHHHHHHHHcCChhhhhcC--------
Confidence 67999999999997 6999999753110000 0 0000123455677777775544333
Q ss_pred ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCchhhccceEEEEc
Q 001446 988 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRLID 1063 (1075)
Q Consensus 988 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i~~~~~~l~l~~ 1063 (1075)
...||+|||||++||||++++|++|||||||++||.++...+.+.+++ .++|+|+|+|+++..++.|+++.|.+
T Consensus 139 --~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~ 216 (220)
T TIGR02982 139 --PHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMED 216 (220)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEEC
Confidence 246999999999999999999999999999999999998877766543 48999999999999999999999976
Q ss_pred C
Q 001446 1064 G 1064 (1075)
Q Consensus 1064 g 1064 (1075)
|
T Consensus 217 g 217 (220)
T TIGR02982 217 G 217 (220)
T ss_pred C
Confidence 5
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=308.34 Aligned_cols=169 Identities=27% Similarity=0.357 Sum_probs=150.9
Q ss_pred eEEeeeeeeCCCc-cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc-cCCcCcEEEE
Q 001446 837 ISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYV 914 (1075)
Q Consensus 837 I~f~~V~~~yp~~-~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~-~~~r~~i~~V 914 (1075)
|+++|+++.|++. +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.+||.++... ...|.+++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 5799999999764 4799999999999999999999999999999999999999999999999987654 2245679999
Q ss_pred cCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCC
Q 001446 915 PQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 994 (1075)
Q Consensus 915 pQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 994 (1075)
||+|.+|+.|+++|+ + ..||
T Consensus 81 ~q~~~~~~~tv~~~i--~----------------------------------------------------------~~LS 100 (178)
T cd03247 81 NQRPYLFDTTLRNNL--G----------------------------------------------------------RRFS 100 (178)
T ss_pred ccCCeeecccHHHhh--c----------------------------------------------------------ccCC
Confidence 999999999999987 1 1379
Q ss_pred hhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 995 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 995 gGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
+|||||++||||++++|++|||||||++||.++.+.+.+.+++ .++|+|+++|+++.+...|+++.+.+|.
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 173 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGK 173 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999888777654 4899999999999899999999996553
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=314.95 Aligned_cols=189 Identities=25% Similarity=0.349 Sum_probs=159.6
Q ss_pred EEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc----------cccccE
Q 001446 183 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKEI 252 (1075)
Q Consensus 183 ~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~----------~~~~~i 252 (1075)
++ ||+++|++ +.+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.+
T Consensus 3 ~~-~l~~~~~~-~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 3 CV-DIEKRLPD-FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred ee-eeeEecCC-eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 44 89999964 344 99999999 99999999999999999999999999999999998531 134579
Q ss_pred EEEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 253 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 253 ~~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
+|+||++.++. .|+++|+.++.... ......+++.++++.+++.+..++.+ .+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYP--------AQLSGGEKQRVALARALA 147 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCc--------ccCCHHHHHHHHHHHHHh
Confidence 99999998875 59999998753211 01112346778999999988777765 689999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
.+|+++||||||++||+.+.+.+.+.+++ .|+|+|++||+.+.+ ..||++++|++
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 207 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMED 207 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEEC
Confidence 99999999999999999999999887754 378999999999987 47999999986
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=322.40 Aligned_cols=210 Identities=20% Similarity=0.264 Sum_probs=165.9
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc---CCcCcEEE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIFY 913 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~---~~r~~i~~ 913 (1075)
|+++|+++.|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|.+|+|.+||.++...+ ..+.+++|
T Consensus 3 i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 3 LYLEGLSVSFDG-FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred EEEEeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 789999999975 57999999999999999999999999999999999999999999999999887652 23456999
Q ss_pred EcCCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccC
Q 001446 914 VPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 992 (1075)
Q Consensus 914 VpQdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 992 (1075)
+||+|.+|.+ |+++|+.++..........+ .+ ......++.+.++++.+++.+.... ....
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~ 143 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKSVFASL--FF------RLSAEEKDRIEEVLETIGLADEADR----------LAGL 143 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhccccccccc--cc------ccHHHHHHHHHHHHHHcCCchhhcC----------Chhh
Confidence 9999999987 99999986421100000000 00 0000123456677777776433221 1356
Q ss_pred CChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
||||||||++||||++++|++|||||||++||.++...+.+.+++ .++|+|+|+|+++.+ ++.|+++.+.+|.
T Consensus 144 LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 219 (242)
T TIGR03411 144 LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGS 219 (242)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 999999999999999999999999999999999999988887754 378999999999876 5799999997765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=322.36 Aligned_cols=196 Identities=21% Similarity=0.228 Sum_probs=162.3
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCC-----CCccEEEeCCcCc--------cc
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS--------DL 248 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~--------~~ 248 (1075)
-+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+. .+
T Consensus 6 ~~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 47899999985 4689999999999999999999999999999999999986 4799999998641 23
Q ss_pred cccEEEEcCCCCCCcCCHHHHhcCCCCCCcc--cCcCCHHHHHHHHHHcCChhH----HhcCCCCcccCCCCCCChhHHH
Q 001446 249 NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 322 (1075)
Q Consensus 249 ~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~g~~LSgGqkq 322 (1075)
++.++|+||++.++..|++||+.++...... .....++++.++++.+++.+. .++.+ .+|||||||
T Consensus 85 ~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~Gq~q 156 (251)
T PRK14244 85 RAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSA--------FELSGGQQQ 156 (251)
T ss_pred hhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcCh--------hhCCHHHHH
Confidence 5679999999988888999999875211110 001123456678899998652 33333 689999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 323 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 323 Rl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+. .||++++|++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~ 223 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQS 223 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEEC
Confidence 99999999999999999999999999999999888764 3789999999999875 6999999986
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=322.59 Aligned_cols=197 Identities=21% Similarity=0.295 Sum_probs=161.9
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----c-c-------
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----S-D------- 247 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~-~------- 247 (1075)
.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .
T Consensus 6 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 6 LLSVRGLTKLYGP-RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred eEEEeeeEEEcCC-ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 6899999999964 679999999999999999999999999999999999999999999999864 1 1
Q ss_pred --ccccEEEEcCCCC--CC-cCCHHHHhcCCCCCCcc-cCcCCHHHHHHHHHHcCChh-HHhcCCCCcccCCCCCCChhH
Q 001446 248 --LNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGE 320 (1075)
Q Consensus 248 --~~~~i~~v~Q~~~--~~-~~tv~~ni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~g~~LSgGq 320 (1075)
.++.++|+||++. ++ ..|+.+|+.++...... .......++.++++.+++.+ ..++.+ .+|||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~Gq 156 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLP--------TTFSGGM 156 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCC--------ccCCHHH
Confidence 1346999999984 33 34888888653211000 00112345677888999863 556554 6899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 321 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 321 kqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|||++|||||+.+|+++||||||++||+.+...+.+.+++ .|.|+|++||+.+.+. .||+++++++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~ 227 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQ 227 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999999999999887753 3889999999999986 6999999986
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=327.39 Aligned_cols=203 Identities=23% Similarity=0.275 Sum_probs=165.9
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYV 914 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~V 914 (1075)
++++||+++|++..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ..++.+++||
T Consensus 4 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 83 (277)
T PRK13652 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLV 83 (277)
T ss_pred EEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEE
Confidence 78999999997656799999999999999999999999999999999999999999999999988653 2345679999
Q ss_pred cCCC--CCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccC
Q 001446 915 PQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 992 (1075)
Q Consensus 915 pQdP--~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 992 (1075)
||+| .+|..|+++|+.++..... . .+...+..+.++++.++|.+...+. ...
T Consensus 84 ~q~~~~~~~~~tv~~~l~~~~~~~~----------~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~ 137 (277)
T PRK13652 84 FQNPDDQIFSPTVEQDIAFGPINLG----------L------DEETVAHRVSSALHMLGLEELRDRV----------PHH 137 (277)
T ss_pred ecCcccccccccHHHHHHhHHHHcC----------C------CHHHHHHHHHHHHHHCCChhHhcCC----------ccc
Confidence 9998 4788899999975321000 0 0001123456677877775544333 246
Q ss_pred CChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
||||||||++|||||+++|++|||||||++||..+...+.+.+++ .++|+|+++|+++.+ ++.|+++.|.+|.
T Consensus 138 LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~ 215 (277)
T PRK13652 138 LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGR 215 (277)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCe
Confidence 999999999999999999999999999999999998887776543 389999999999976 7999999997765
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=324.24 Aligned_cols=210 Identities=20% Similarity=0.199 Sum_probs=165.2
Q ss_pred CCceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCC-----CCCCeEecCCCCCccc----
Q 001446 834 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP-----VVSGSLTKPSQHIDEE---- 904 (1075)
Q Consensus 834 ~g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~-----~~sG~I~idg~di~~~---- 904 (1075)
.+.|+++||++.|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++ |++|+|.+||.++...
T Consensus 11 ~~~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYGK-FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeCC-eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 467999999999975 479999999999999999999999999999999999986 4799999999988532
Q ss_pred cCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCc
Q 001446 905 AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWD 984 (1075)
Q Consensus 905 ~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gld 984 (1075)
..+|.+++|+||+|.+|+.|+++|+.++..... +. .....++.+.++++.+++...+... ++
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~---------~~------~~~~~~~~~~~~l~~~~l~~~~~~~---~~ 151 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFE---------KL------SRAEMDERVEWALTKAALWNEVKDK---LH 151 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcC---------CC------CHHHHHHHHHHHHHHcCCChhhHHH---Hh
Confidence 234667999999999999999999975421000 00 0000123455667776663221110 11
Q ss_pred cccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCch-hhccceEEE
Q 001446 985 ANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRL 1061 (1075)
Q Consensus 985 t~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i-~~~~~~l~l 1061 (1075)
.....||||||||++||||++++|+||||||||++||.++...+.+.+++ .+.|+|+|+|++..+ .+.|+++.+
T Consensus 152 ---~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l 228 (260)
T PRK10744 152 ---QSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFM 228 (260)
T ss_pred ---cCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEE
Confidence 12357999999999999999999999999999999999999888777654 478999999999865 689999999
Q ss_pred EcCC
Q 001446 1062 IDGE 1065 (1075)
Q Consensus 1062 ~~g~ 1065 (1075)
.+|.
T Consensus 229 ~~G~ 232 (260)
T PRK10744 229 YLGE 232 (260)
T ss_pred ECCE
Confidence 7764
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=326.42 Aligned_cols=199 Identities=21% Similarity=0.221 Sum_probs=163.5
Q ss_pred CccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCC-----CCccEEEeCCcCc-------
Q 001446 179 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 246 (1075)
Q Consensus 179 ~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~------- 246 (1075)
...++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 37 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 37 KPHVVAKNFSIYYG-EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred ceEEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 34689999999996 4579999999999999999999999999999999999864 4999999998531
Q ss_pred -cccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccC-cCCHHHHHHHHHHcCCh----hHHhcCCCCcccCCCCCCChhH
Q 001446 247 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGE 320 (1075)
Q Consensus 247 -~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~-~~~~~~~~~~l~~~~l~----~~~~~~~~~~~~~~g~~LSgGq 320 (1075)
.+++.++|+||+|.++..|++||+.++........ ....+++.++++.+++. +..++.+ ..|||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LSgGq 187 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNA--------LGLSGGQ 187 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCCh--------hhCCHHH
Confidence 23567999999998887899999987532111100 11124456778888774 3333333 6899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 321 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 321 kqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|||++|||||+.+|+++||||||++||+.+.+.+.+.+++. ++|+|++||+++.+. .||++++|++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~ 256 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYE 256 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999888653 679999999999875 6999999986
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=335.60 Aligned_cols=189 Identities=22% Similarity=0.291 Sum_probs=161.2
Q ss_pred eEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc----------cccccEEEE
Q 001446 186 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKEIFYV 255 (1075)
Q Consensus 186 ~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~----------~~~~~i~~v 255 (1075)
|+++.|++ .. + |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|+
T Consensus 4 ~l~~~~~~-~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGD-FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECC-EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 78888853 33 5 99999999999999999999999999999999999999999998541 235679999
Q ss_pred cCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCC
Q 001446 256 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 334 (1075)
Q Consensus 256 ~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p 334 (1075)
||++.++. .|++||+.++..... .....+++.++++.++|.+..++.+ .+||||||||++|||||+.+|
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~--~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LSgGqkqRvalAraL~~~p 150 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRAR--PSERRISFERVIELLGIGHLLGRLP--------GRLSGGEKQRVAIGRALLSSP 150 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccC--hhHHHHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHHcCC
Confidence 99998876 499999998643211 1112345788999999998888876 689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcCC
Q 001446 335 KFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 387 (1075)
Q Consensus 335 ~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~~ 387 (1075)
+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 151 ~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G 208 (354)
T TIGR02142 151 RLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDG 208 (354)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999998887754 3789999999999874 69999999863
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=310.42 Aligned_cols=187 Identities=26% Similarity=0.359 Sum_probs=157.1
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----ccccccEEEEc
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 256 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v~ 256 (1075)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|++
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSRG-ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 46899999985 4679999999999999999999999999999999999999999999999864 12346799999
Q ss_pred CCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCC
Q 001446 257 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 335 (1075)
Q Consensus 257 Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~ 335 (1075)
|++.++. .|+++|+.+...... ....++.++++.+++.+..++.+ .+||||||||++||||++.+|+
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPA--------AQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCCh--------hhcCHHHHHHHHHHHHHhcCCC
Confidence 9988765 699999976432111 12345778999999988877765 6899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHhhCCeEE
Q 001446 336 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVL 382 (1075)
Q Consensus 336 illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~~~d~i~ 382 (1075)
++||||||++||+.+.+.+.+.+++ .|.|+|++||+...+. +++++
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~ 196 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EAREL 196 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEe
Confidence 9999999999999999999888764 4889999999885432 34444
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=314.85 Aligned_cols=200 Identities=20% Similarity=0.228 Sum_probs=162.9
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEcC
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 916 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~VpQ 916 (1075)
++++||+++|+. +++|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.+||.++.+....+.+++||||
T Consensus 1 ~~~~~l~~~~~~---~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 1 LALDKVRYEYEH---LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred CeEEeeeEEeCC---cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 368999999963 57899999999999999999999999999999999999999999999998765445667999999
Q ss_pred CCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCCh
Q 001446 917 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 995 (1075)
Q Consensus 917 dP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 995 (1075)
+|.+|.+ |+++|+.++...... .....+..+.++++.+++.+...+. ...||+
T Consensus 78 ~~~~~~~~t~~en~~~~~~~~~~----------------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 131 (213)
T TIGR01277 78 ENNLFAHLTVRQNIGLGLHPGLK----------------LNAEQQEKVVDAAQQVGIADYLDRL----------PEQLSG 131 (213)
T ss_pred cCccCCCCcHHHHHHhHhhccCC----------------ccHHHHHHHHHHHHHcCcHHHhhCC----------cccCCH
Confidence 9999975 999999754210000 0001134456677888875544333 246999
Q ss_pred hHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 996 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 996 GQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
|||||++||||++++|+|+||||||++||.++...+.+.+++ .++|+|+|+|++..+ ++.|+++.|.+|.
T Consensus 132 G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~ 206 (213)
T TIGR01277 132 GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGK 206 (213)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCe
Confidence 999999999999999999999999999999999887776543 389999999999865 6899999997654
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=301.44 Aligned_cols=160 Identities=38% Similarity=0.642 Sum_probs=144.5
Q ss_pred EEEEeEEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEE
Q 001446 182 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 254 (1075)
Q Consensus 182 i~~~~v~~~~~~~-~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 254 (1075)
++++|+++.|++. .++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4689999999653 379999999999999999999999999999999999999999999999864 123567999
Q ss_pred EcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCC
Q 001446 255 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 334 (1075)
Q Consensus 255 v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p 334 (1075)
+||+|.++..|+.||+ ||||||||++||||++.+|
T Consensus 81 ~~~~~~~~~~t~~e~l---------------------------------------------LS~G~~~rl~la~al~~~p 115 (171)
T cd03228 81 VPQDPFLFSGTIRENI---------------------------------------------LSGGQRQRIAIARALLRDP 115 (171)
T ss_pred EcCCchhccchHHHHh---------------------------------------------hCHHHHHHHHHHHHHhcCC
Confidence 9999988878888876 8999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHhhCCeEEEEcC
Q 001446 335 KFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 335 ~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
+++||||||++||+.+...+.+.+++ .++|+|++||+++.+..||++++|++
T Consensus 116 ~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~ 169 (171)
T cd03228 116 PILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDD 169 (171)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcC
Confidence 99999999999999999999888764 36899999999999888999999975
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=323.03 Aligned_cols=203 Identities=20% Similarity=0.240 Sum_probs=162.2
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc----------cC
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE----------AG 906 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~----------~~ 906 (1075)
|+++||++.|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++... ..
T Consensus 4 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 4 IEVKNLVKKFHG-QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred EEEeceEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 789999999975 4699999999999999999999999999999999999999999999999988642 12
Q ss_pred CcCcEEEEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcc
Q 001446 907 SGCGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 985 (1075)
Q Consensus 907 ~r~~i~~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 985 (1075)
.|.+++||||+|.+|+ .|+++|+.++..... +. ......+.+.++++.+++......
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---------~~------~~~~~~~~~~~~l~~~gl~~~~~~------- 140 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK---------GE------PKEEATARARELLAKVGLAGKETS------- 140 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhc---------CC------CHHHHHHHHHHHHHHcCCcchhhC-------
Confidence 3567999999999886 699999975310000 00 000012334566777776433211
Q ss_pred ccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhccceEEE
Q 001446 986 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRL 1061 (1075)
Q Consensus 986 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~~~l~l 1061 (1075)
....||||||||++||||++++|++|||||||++||.++...+.+.+++ .++|+|+|+|+++.+ ++.|+++.|
T Consensus 141 ---~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l 217 (250)
T PRK11264 141 ---YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFM 217 (250)
T ss_pred ---ChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 2357999999999999999999999999999999999999888776543 489999999999866 679999999
Q ss_pred EcCC
Q 001446 1062 IDGE 1065 (1075)
Q Consensus 1062 ~~g~ 1065 (1075)
.+|.
T Consensus 218 ~~G~ 221 (250)
T PRK11264 218 DQGR 221 (250)
T ss_pred ECCE
Confidence 7764
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=323.81 Aligned_cols=208 Identities=19% Similarity=0.207 Sum_probs=165.7
Q ss_pred CCceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc---------
Q 001446 834 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--------- 904 (1075)
Q Consensus 834 ~g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--------- 904 (1075)
.+.|+++||++.|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++...
T Consensus 3 ~~~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 3 ENKLNVIDLHKRYGE-HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred CccEEEeeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 367999999999975 5799999999999999999999999999999999999999999999999987531
Q ss_pred ------cCCcCcEEEEcCCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhh
Q 001446 905 ------AGSGCGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLE 977 (1075)
Q Consensus 905 ------~~~r~~i~~VpQdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~ 977 (1075)
...|.+++||||+|.+|++ |+++|+.++... ..+. .....++.+.++++.+++.....
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~---------~~~~------~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ---------VLGL------SKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHH---------hCCC------CHHHHHHHHHHHHHHcCCChhhh
Confidence 1235679999999999975 999999753100 0000 00001234566777777744321
Q ss_pred hhccCCccccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCchh-
Q 001446 978 REEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIP- 1053 (1075)
Q Consensus 978 ~~~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i~- 1053 (1075)
+ .....||||||||++|||||+++|+++||||||++||.++.+.+.+.+++ .++|+|+|+|+++.+.
T Consensus 147 ------~---~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~ 217 (257)
T PRK10619 147 ------G---KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARH 217 (257)
T ss_pred ------h---CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 0 11356999999999999999999999999999999999999888776543 4899999999998765
Q ss_pred hccceEEEEcCCc
Q 001446 1054 FHSLELRLIDGEG 1066 (1075)
Q Consensus 1054 ~~~~~l~l~~g~g 1066 (1075)
+.|+++.|.+|.-
T Consensus 218 ~~d~i~~l~~G~i 230 (257)
T PRK10619 218 VSSHVIFLHQGKI 230 (257)
T ss_pred hcCEEEEEECCEE
Confidence 7899999987763
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=330.13 Aligned_cols=199 Identities=26% Similarity=0.347 Sum_probs=161.8
Q ss_pred ccEEEEeEEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCC---ccEEEeCCcCc------c
Q 001446 180 NYIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVGS------D 247 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~---~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~---~G~i~~~~~~~------~ 247 (1075)
..++++|+++.|+. ..++++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|.+- +
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 46999999999853 246999999999999999999999999999999999999996 99999999641 1
Q ss_pred ---cc-ccEEEEcCCCC--CC-cCCHHHHhcCCCCCCc-ccCcCCHHHHHHHHHHcCChh---HHhcCCCCcccCCCCCC
Q 001446 248 ---LN-KEIFYVPQRPY--TA-VGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDEL 316 (1075)
Q Consensus 248 ---~~-~~i~~v~Q~~~--~~-~~tv~~ni~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~~~~g~~L 316 (1075)
++ +.|+||||+|. +. ..|+.+|+..+..... .......+++.++++.++|.+ ..+++| .+|
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p--------~~L 162 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYP--------HEF 162 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCc--------ccC
Confidence 12 47999999983 33 3588888865432111 111112345678899999864 234555 689
Q ss_pred ChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 317 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 317 SgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|||||||++|||||+.+|++||+||||++||..+...+++.+++ .|.|+|+||||++.+. .+|+|++|.+
T Consensus 163 SgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~ 237 (330)
T PRK09473 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYA 237 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999998887653 3899999999999885 6999999975
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=317.62 Aligned_cols=198 Identities=22% Similarity=0.293 Sum_probs=162.5
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEE
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFY 913 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~ 913 (1075)
-|+++||++.|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++...+ ..+.+++|
T Consensus 7 ~i~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (225)
T PRK10247 7 LLQLQNVGYLAGD-AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSY 85 (225)
T ss_pred eEEEeccEEeeCC-ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEE
Confidence 5899999999964 56999999999999999999999999999999999999999999999999887652 24567999
Q ss_pred EcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchh-hhhhhccCCccccccccC
Q 001446 914 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY-LLEREEVGWDANLNWEDI 992 (1075)
Q Consensus 914 VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~-~i~~~~~Gldt~~~~g~~ 992 (1075)
+||+|.+|+.|+++|+.++... .+. ...+..+.++++.+++.. .... ....
T Consensus 86 ~~q~~~l~~~tv~enl~~~~~~----------~~~--------~~~~~~~~~~l~~~~l~~~~~~~----------~~~~ 137 (225)
T PRK10247 86 CAQTPTLFGDTVYDNLIFPWQI----------RNQ--------QPDPAIFLDDLERFALPDTILTK----------NIAE 137 (225)
T ss_pred EecccccccccHHHHHHhHHhh----------cCC--------ChHHHHHHHHHHHcCCChHHhcC----------Cccc
Confidence 9999999999999999753110 000 001233456677777632 2211 1357
Q ss_pred CChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCchhhccceEEEE
Q 001446 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRLI 1062 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i~~~~~~l~l~ 1062 (1075)
||+|||||++|||||+++|+++||||||++||..+...+.+.+++ .++|+|+|+|+++.+.+.|+++.|.
T Consensus 138 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~ 211 (225)
T PRK10247 138 LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQ 211 (225)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEe
Confidence 999999999999999999999999999999999998877766543 3889999999999889999999994
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=312.37 Aligned_cols=206 Identities=31% Similarity=0.394 Sum_probs=167.5
Q ss_pred EEEEeEEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCC-C----CccEEEeCCcC------c-
Q 001446 182 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-L----VSGHIAKPGVG------S- 246 (1075)
Q Consensus 182 i~~~~v~~~~~~~---~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~-~----~~G~i~~~~~~------~- 246 (1075)
++++|++++|+.. ..+++|+||++++||+++|+|+|||||||+.++|+|+++ | .+|+|.++|.+ +
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 6789999988653 479999999999999999999999999999999999998 3 57999999974 1
Q ss_pred --cc-cccEEEEcCCCCC---CcCCHHHHhcCCCCCCcc--cCcCCHHHHHHHHHHcCChh---HHhcCCCCcccCCCCC
Q 001446 247 --DL-NKEIFYVPQRPYT---AVGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDE 315 (1075)
Q Consensus 247 --~~-~~~i~~v~Q~~~~---~~~tv~~ni~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~~~~g~~ 315 (1075)
.+ .+.|+|+||+|.. +..||.+++.-....... ......+++.++|+.+++.+ ..+.+| ++
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP--------he 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP--------HE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC--------cc
Confidence 22 3579999999942 335888877643321111 11123456888999999975 568888 79
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcCCCcE
Q 001446 316 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEW 390 (1075)
Q Consensus 316 LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~~g~~ 390 (1075)
|||||||||.||.||+.+|++||.||||+|||.....+|++.+++ .|.++|+||||+..+. .||+|++|.. |+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYa--G~ 231 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYA--GR 231 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEEC--cE
Confidence 999999999999999999999999999999999999998887753 5999999999999875 7999999985 45
Q ss_pred EEecCCC
Q 001446 391 RVHDKRD 397 (1075)
Q Consensus 391 ~~~~~~~ 397 (1075)
.++.+..
T Consensus 232 iVE~g~~ 238 (316)
T COG0444 232 IVEEGPV 238 (316)
T ss_pred EEEeCCH
Confidence 6665443
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=320.26 Aligned_cols=197 Identities=21% Similarity=0.255 Sum_probs=162.6
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC-----CccEEEeCCcCc-------cc
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------DL 248 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~-------~~ 248 (1075)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+. .+
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYG-ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEEC-CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 588999999996 46799999999999999999999999999999999999986 599999998531 23
Q ss_pred cccEEEEcCCCCCCcCCHHHHhcCCCCCCccc-CcCCHHHHHHHHHHcCChhH----HhcCCCCcccCCCCCCChhHHHH
Q 001446 249 NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQR 323 (1075)
Q Consensus 249 ~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~g~~LSgGqkqR 323 (1075)
++.++|+||+|.++..|++||+.++....... .....+++.++++.+++.+. .++. ..+||||||||
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~LS~G~~qr 153 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSH--------AFGLSGGQQQR 153 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcC--------cccCCHHHHHH
Confidence 56799999999888899999998753221100 11112345667788887532 3332 26899999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 324 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 324 l~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+. .||++++|++
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~ 219 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLM 219 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999888765 3689999999999875 5999999986
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=328.73 Aligned_cols=200 Identities=22% Similarity=0.237 Sum_probs=161.6
Q ss_pred eEEeeeeeeCCCc----cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc------cC
Q 001446 837 ISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE------AG 906 (1075)
Q Consensus 837 I~f~~V~~~yp~~----~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~------~~ 906 (1075)
|+++||++.|++. .++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++... ..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 7899999999752 4699999999999999999999999999999999999999999999999988653 12
Q ss_pred CcCcEEEEcCCC--CCCCcchhhhhcCCCCh---HHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchh-hhhhhc
Q 001446 907 SGCGIFYVPQRP--YTCLGTLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY-LLEREE 980 (1075)
Q Consensus 907 ~r~~i~~VpQdP--~Lf~gTir~NL~~p~~~---~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~-~i~~~~ 980 (1075)
.|.+|+|+||+| .+|+.|+++|+.++... ... .....+.++++.++|.. ....
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~-------------------~~~~~~~~~l~~~~l~~~~~~~-- 141 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQE-------------------EAEALAREKLALVGISESLFEK-- 141 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHH-------------------HHHHHHHHHHHHcCCChhhhhC--
Confidence 456799999998 68889999999753110 000 01122345566666632 2111
Q ss_pred cCCccccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhcc
Q 001446 981 VGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHS 1056 (1075)
Q Consensus 981 ~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~ 1056 (1075)
....||||||||++|||||+++|++|||||||++||.++...+.+.+++ .++|||+|+|+++.+ .+.|
T Consensus 142 --------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d 213 (280)
T PRK13649 142 --------NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYAD 213 (280)
T ss_pred --------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCC
Confidence 1356999999999999999999999999999999999999888776643 489999999999865 6899
Q ss_pred ceEEEEcCC
Q 001446 1057 LELRLIDGE 1065 (1075)
Q Consensus 1057 ~~l~l~~g~ 1065 (1075)
+++.|.+|.
T Consensus 214 ~i~~l~~G~ 222 (280)
T PRK13649 214 FVYVLEKGK 222 (280)
T ss_pred EEEEEECCE
Confidence 999997764
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=302.12 Aligned_cols=162 Identities=29% Similarity=0.379 Sum_probs=145.0
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-c-------cccccEE
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-------DLNKEIF 253 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-~-------~~~~~i~ 253 (1075)
++++|+++.|+ ++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.++
T Consensus 1 i~~~~l~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYG-QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEEC-CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 46899999986 4679999999999999999999999999999999999999999999999853 1 2346799
Q ss_pred EEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcC
Q 001446 254 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 332 (1075)
Q Consensus 254 ~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~ 332 (1075)
|++|+|.++. .|++||+.+. ||||||||++|||||++
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~ 117 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQRVALARALAM 117 (178)
T ss_pred EEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHC
Confidence 9999998775 4999988652 89999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 333 KPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 333 ~p~illLDEpts~LD~~~~~~i~~~l~~---~-~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
+|+++||||||++||+.++..+.+.+++ . ++|+|++||+++.+. .+|++++|++
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 176 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRD 176 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeC
Confidence 9999999999999999999999887754 3 789999999999987 6999999975
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=323.22 Aligned_cols=209 Identities=21% Similarity=0.234 Sum_probs=164.8
Q ss_pred CceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCC-----CCCeEecCCCCCccc----c
Q 001446 835 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPV-----VSGSLTKPSQHIDEE----A 905 (1075)
Q Consensus 835 g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~-----~sG~I~idg~di~~~----~ 905 (1075)
.-|+++|++++|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++| .+|+|.+||.++... .
T Consensus 6 ~~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 6 AIIETENLNLFYTD-FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred ceEEEeeeEEEeCC-ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 36999999999975 5699999999999999999999999999999999999987 489999999987532 2
Q ss_pred CCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcc
Q 001446 906 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 985 (1075)
Q Consensus 906 ~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 985 (1075)
..|.+++||||+|.+|+.|+++||.++.... +.. .....++.+.++++.+++...+ ++.+++
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~----------~~~-----~~~~~~~~~~~~l~~~~l~~~l---~~~~~~ 146 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIH----------GTK-----DKKKLDEIVEQSLKKSALWNEV---KDKLNT 146 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhc----------CCC-----CHHHHHHHHHHHHHHhCCchhh---HHHHhC
Confidence 3456799999999999999999997642100 000 0000123455566666653221 122333
Q ss_pred ccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCch-hhccceEEEE
Q 001446 986 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLI 1062 (1075)
Q Consensus 986 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i-~~~~~~l~l~ 1062 (1075)
. ...||||||||++|||||+++|++|||||||++||..+...+.+++++ .++|+|+|+|+++.+ ++.|+++.|.
T Consensus 147 ~---~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~ 223 (254)
T PRK14273 147 N---ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFL 223 (254)
T ss_pred C---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 2 357999999999999999999999999999999999999888777654 478999999999865 7899999997
Q ss_pred cCC
Q 001446 1063 DGE 1065 (1075)
Q Consensus 1063 ~g~ 1065 (1075)
+|.
T Consensus 224 ~G~ 226 (254)
T PRK14273 224 NGC 226 (254)
T ss_pred CCE
Confidence 665
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=309.87 Aligned_cols=192 Identities=26% Similarity=0.353 Sum_probs=158.6
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc-cCCcCcEEEEc
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYVP 915 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~-~~~r~~i~~Vp 915 (1075)
|+++||++.|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ...|.+++|+|
T Consensus 1 l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERDG-RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeCC-ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 478999999865 5699999999999999999999999999999999999999999999999987654 23456799999
Q ss_pred CCCCCC-CcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCC
Q 001446 916 QRPYTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 994 (1075)
Q Consensus 916 QdP~Lf-~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 994 (1075)
|+|.++ ..|+++|+.++... ..++.+.++++.+++.+.... . ...||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~----------------------~~~~~~~~~l~~~~l~~~~~~-------~---~~~LS 127 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHAD----------------------HSDEQVEEALARVGLNGFEDR-------P---VAQLS 127 (201)
T ss_pred cccccCCCcCHHHHHHhhccc----------------------ccHHHHHHHHHHcCChhhhcC-------c---hhhCC
Confidence 999886 57999999754210 013345566777777433211 1 34699
Q ss_pred hhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCC-CchhhccceEEE
Q 001446 995 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRP-ALIPFHSLELRL 1061 (1075)
Q Consensus 995 gGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRl-s~i~~~~~~l~l 1061 (1075)
||||||++||||++++|++|||||||++||..+.+.+.+.+++ .++|+|+|+|+. ....+.++++.+
T Consensus 128 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 128 AGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999999999999999999888877643 489999999976 577888888877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=329.46 Aligned_cols=204 Identities=22% Similarity=0.277 Sum_probs=164.9
Q ss_pred CceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc-cCCcCcEEE
Q 001446 835 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFY 913 (1075)
Q Consensus 835 g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~-~~~r~~i~~ 913 (1075)
..|+++||++.|++ ..+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.|+... ...|.+|+|
T Consensus 6 ~~i~i~~l~k~~~~-~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 6 APIDFRNVEKRYGD-KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred ceEEEEeEEEEECC-eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 46999999999974 5799999999999999999999999999999999999999999999999998764 234667999
Q ss_pred EcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccC
Q 001446 914 VPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 992 (1075)
Q Consensus 914 VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 992 (1075)
|||+|.+|. .|++|||.|.... .+.. .......+.++++.++|... .++.. ..
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~~l~~~-------~~~~~---~~ 138 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRY----------FGLS------AAAARALVPPLLEFAKLENK-------ADAKV---GE 138 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHcCCchH-------hcCch---hh
Confidence 999999986 6999999752100 0000 00011234566677766432 22222 46
Q ss_pred CChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
||+|||||++|||||+++|++|||||||++||+.+...+.+.+++ .|+|+|+++|.++.+ +++|+++.|.+|.
T Consensus 139 LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 139 LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGR 215 (306)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999888777654 489999999999865 6899999997765
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=321.44 Aligned_cols=203 Identities=25% Similarity=0.304 Sum_probs=162.4
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcc--------ccCCc
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE--------EAGSG 908 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~--------~~~~r 908 (1075)
|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.. ....|
T Consensus 3 l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 3 IQLNGINCFYGA-HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEeeEEEECC-eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 789999999964 579999999999999999999999999999999999999999999999998731 12345
Q ss_pred CcEEEEcCCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc
Q 001446 909 CGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 987 (1075)
Q Consensus 909 ~~i~~VpQdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 987 (1075)
.+++|+||+|.+|.+ |+++|+.+.... ..+.. .....+.+.++++.+++.......
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~---------~~~~~------~~~~~~~~~~~l~~~gl~~~~~~~-------- 138 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCR---------VLGLS------KDQALARAEKLLERLRLKPYADRF-------- 138 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHH---------HcCCC------HHHHHHHHHHHHHHcCChhhhhCC--------
Confidence 679999999999975 999999641100 00000 000123455667777775443322
Q ss_pred ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhccceEEEEc
Q 001446 988 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLID 1063 (1075)
Q Consensus 988 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~~~l~l~~ 1063 (1075)
...||||||||++||||++++|+++||||||++||.++...+.+.+++ .+.|+|+|+|++..+ ++.|+++.|.+
T Consensus 139 --~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~ 216 (242)
T PRK11124 139 --PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMEN 216 (242)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 246999999999999999999999999999999999999887776643 489999999999876 57899999977
Q ss_pred CC
Q 001446 1064 GE 1065 (1075)
Q Consensus 1064 g~ 1065 (1075)
|.
T Consensus 217 g~ 218 (242)
T PRK11124 217 GH 218 (242)
T ss_pred CE
Confidence 65
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=320.62 Aligned_cols=198 Identities=22% Similarity=0.257 Sum_probs=161.6
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCC--C---CccEEEeCCcCc--------
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVGS-------- 246 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~--~---~~G~i~~~~~~~-------- 246 (1075)
..++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 4 KIITSSDVHLFYG-KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred ceEEEEeEEEEEC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 3689999999996 4679999999999999999999999999999999999875 4 599999998631
Q ss_pred cccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccC-cCCHHHHHHHHHHcCCh----hHHhcCCCCcccCCCCCCChhHH
Q 001446 247 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQ 321 (1075)
Q Consensus 247 ~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~-~~~~~~~~~~l~~~~l~----~~~~~~~~~~~~~~g~~LSgGqk 321 (1075)
.+++.++|+||++.++..|+++|+.++........ ...++++.+.++.+++. +..++.+ .+||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~--------~~LS~Gq~ 154 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESA--------LSLSGGQQ 154 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCc--------ccCCHHHH
Confidence 23567999999998888899999987532111000 11123455677777764 2233333 68999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 322 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 322 qRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
||++|||||+.+|+++||||||++||+.+++.+.+.+++. +.|+|++||+++.+. .||++++|++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~ 222 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLT 222 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999998888653 689999999999875 6999999986
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=323.24 Aligned_cols=198 Identities=28% Similarity=0.427 Sum_probs=164.0
Q ss_pred cEEEEeEEEEcCC--------CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc------
Q 001446 181 YIEFSGVKVVTPT--------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------ 246 (1075)
Q Consensus 181 ~i~~~~v~~~~~~--------~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------ 246 (1075)
.|+++||++.|++ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 5899999999973 46899999999999999999999999999999999999999999999998641
Q ss_pred ---cccccEEEEcCCCC--CC-cCCHHHHhcCCCCCC-cccCcCCHHHHHHHHHHcCCh-hHHhcCCCCcccCCCCCCCh
Q 001446 247 ---DLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSL 318 (1075)
Q Consensus 247 ---~~~~~i~~v~Q~~~--~~-~~tv~~ni~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSg 318 (1075)
.+++.++|+||++. ++ ..|+.+|+.++.... .........++.++++.+++. ...++.+ ..|||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~~LS~ 154 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRP--------PQLSG 154 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCC--------ccCCh
Confidence 13567999999983 33 469999986532110 001111234577889999996 4566654 68999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 319 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 319 GqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|||||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .+.|+|++||+++.+. .||++++|++
T Consensus 155 Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~ 227 (268)
T PRK10419 155 GQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDN 227 (268)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999988887753 3889999999999986 6999999986
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=319.96 Aligned_cols=200 Identities=21% Similarity=0.227 Sum_probs=162.1
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCC-----CCccEEEeCCcCc--------
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS-------- 246 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~-------- 246 (1075)
..++++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 9 ~~l~i~~v~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 9 TVLRTENLNVYYG-SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred eEEEEeeeEEEEC-CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 3699999999985 4579999999999999999999999999999999999986 4899999998531
Q ss_pred cccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHH
Q 001446 247 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 326 (1075)
Q Consensus 247 ~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~l 326 (1075)
.++++++|++|++.++..|++||+.++...... .....+++.++++.+++.+.+.... .....+||||||||++|
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~----~~~~~~LSgGq~qrv~l 162 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGY-KGDMDELVERSLRQAALWDEVKDKL----KQSGLSLSGGQQQRLCI 162 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCc-chHHHHHHHHHHHHhCchhhHHHHh----cCCcccCCHHHHHHHHH
Confidence 235679999999988878999999876432111 1112344566778888754322110 01136899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhH-hhCCeEEEEc
Q 001446 327 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLD 385 (1075)
Q Consensus 327 Aral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~-~~~d~i~~l~ 385 (1075)
||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+ ..||++++|+
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFN 224 (264)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999888764 368999999999886 5799999997
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=318.00 Aligned_cols=202 Identities=24% Similarity=0.285 Sum_probs=165.3
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEcC
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 916 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~VpQ 916 (1075)
|+++|++++|++ +++|+|+||+|.+||.++|+||||||||||+++|.|+++|.+|+|.+||.++...+..+..++|+||
T Consensus 1 i~i~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFGS-FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEECC-eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 578999999975 4799999999999999999999999999999999999999999999999998766545667999999
Q ss_pred CCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCCh
Q 001446 917 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 995 (1075)
Q Consensus 917 dP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 995 (1075)
+|.+|++ |+++|+.+..... +. .....++.+.++++.+++....... ...||+
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~lS~ 133 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIR----------KH------PKAKIKARVEELLELVQLEGLGDRY----------PNQLSG 133 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhc----------CC------CHHHHHHHHHHHHHHcCCHhHhhCC----------hhhCCH
Confidence 9999976 9999997531100 00 0000123455667777775443322 246999
Q ss_pred hHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---c-CceEEEecCCCCc-hhhccceEEEEcCC
Q 001446 996 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---M-GITFVTSSQRPAL-IPFHSLELRLIDGE 1065 (1075)
Q Consensus 996 GQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~-~~TvI~IaHRls~-i~~~~~~l~l~~g~ 1065 (1075)
|||||++||||++++|+++||||||++||.++...+.+.+++ . ++|+|+++|+++. .++.|+++.+.+|.
T Consensus 134 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~ 208 (237)
T TIGR00968 134 GQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGK 208 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCE
Confidence 999999999999999999999999999999999888777653 3 7999999999985 57899999997665
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=313.84 Aligned_cols=196 Identities=21% Similarity=0.224 Sum_probs=157.4
Q ss_pred EeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc------CCcCcEE
Q 001446 839 FSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA------GSGCGIF 912 (1075)
Q Consensus 839 f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~------~~r~~i~ 912 (1075)
++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.+++.+. ..+.+++
T Consensus 1 i~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFGD-KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEECC-EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 4688998874 57999999999999999999999999999999999999999999999999875431 2355799
Q ss_pred EEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccccccc
Q 001446 913 YVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 991 (1075)
Q Consensus 913 ~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 991 (1075)
|++|+|.+|. .|+++|+.++.... +. .....++.+.++++.+++.+...+. ..
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~ 133 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYK----------KL------SKKEKREKKKEALEKVGLNLKLKQK----------IY 133 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhc----------CC------CHHHHHHHHHHHHHHcCchhhhcCC----------hh
Confidence 9999999997 69999997521000 00 0001133456677777774433221 34
Q ss_pred CCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCchhhccceEEE
Q 001446 992 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIPFHSLELRL 1061 (1075)
Q Consensus 992 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i~~~~~~l~l 1061 (1075)
.||+|||||++|||||+++|++|||||||++||.++.+.+.+.+++ .+.|+|+|+|++..+++.|+++.|
T Consensus 134 ~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 134 ELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 6999999999999999999999999999999999999888777654 489999999999988888887754
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=320.28 Aligned_cols=203 Identities=23% Similarity=0.308 Sum_probs=163.7
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc----cCCcCcEE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE----AGSGCGIF 912 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~----~~~r~~i~ 912 (1075)
|+++|++++|++ +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++... ...+.+++
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFGP-TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEECC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 689999999864 5799999999999999999999999999999999999999999999999988753 23456799
Q ss_pred EEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccccccc
Q 001446 913 YVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 991 (1075)
Q Consensus 913 ~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 991 (1075)
|+||+|.+|. .|+++|+.++.... .+. .....++.+.++++.+++.+..... ..
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~---------~~~------~~~~~~~~~~~~l~~~gl~~~~~~~----------~~ 135 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRV---------RGA------SKEEAEKQARELLAKVGLAERAHHY----------PS 135 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHh---------cCC------CHHHHHHHHHHHHHHcCChHHHhcC----------hh
Confidence 9999999886 59999997632100 000 0001123455677777775443322 24
Q ss_pred CCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 992 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 992 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
.||+|||||++||||++++|++|||||||++||.++...+.+.+++ .++|+|+|+|++..+ .+.|+++.+.+|.
T Consensus 136 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 213 (240)
T PRK09493 136 ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGR 213 (240)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999888776643 489999999999876 5789999997664
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=322.28 Aligned_cols=199 Identities=21% Similarity=0.258 Sum_probs=164.7
Q ss_pred CccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC-----CccEEEeCCcCc-------
Q 001446 179 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS------- 246 (1075)
Q Consensus 179 ~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~------- 246 (1075)
.+.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 23 ~~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 23 QTALEVRNLNLFYG-DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CcEEEEEEEEEEEC-CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 45799999999996 46799999999999999999999999999999999999884 899999998641
Q ss_pred -cccccEEEEcCCCCCCcCCHHHHhcCCCCCCccc-CcCCHHHHHHHHHHcCChhH----HhcCCCCcccCCCCCCChhH
Q 001446 247 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGE 320 (1075)
Q Consensus 247 -~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~g~~LSgGq 320 (1075)
.+++.++|+||++.++..|++||+.++....... .....+++.++++.+++.+. .++.+ .+|||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~Gq 173 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENA--------FGLSGGQ 173 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCc--------ccCCHHH
Confidence 2356899999999888889999998753211110 11123456778888888542 33332 6899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 321 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 321 kqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+ ..||++++|++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 242 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYM 242 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEEC
Confidence 9999999999999999999999999999999999888764 378999999999987 47999999986
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=319.94 Aligned_cols=197 Identities=24% Similarity=0.270 Sum_probs=163.1
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC-----CccEEEeCCcCc--------c
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS--------D 247 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~--------~ 247 (1075)
.++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+. .
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYG-EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeC-CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 589999999996 46899999999999999999999999999999999999974 899999998541 2
Q ss_pred ccccEEEEcCCCCCCcCCHHHHhcCCCCCCccc-CcCCHHHHHHHHHHcCChhH----HhcCCCCcccCCCCCCChhHHH
Q 001446 248 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 322 (1075)
Q Consensus 248 ~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~g~~LSgGqkq 322 (1075)
+++.++|+||+|.++..|++||+.++....... ....++.+.++++.+++.+. .++. ..+|||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LS~Gq~q 153 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKP--------GTRLSGGQQQ 153 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCC--------hhhcCHHHHH
Confidence 356799999999988899999998753211110 11123346677888887542 3333 2689999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 323 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 323 Rl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+ ..+|+++++++
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~ 220 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYR 220 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999888764 378999999999975 57999999986
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=333.83 Aligned_cols=191 Identities=23% Similarity=0.186 Sum_probs=157.0
Q ss_pred ccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccC--C----cCcEEEEcCCCCCCC
Q 001446 849 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG--S----GCGIFYVPQRPYTCL 922 (1075)
Q Consensus 849 ~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~--~----r~~i~~VpQdP~Lf~ 922 (1075)
.+++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+. + |.+++||||+|.||+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 4569999999999999999999999999999999999999999999999999987532 2 568999999999998
Q ss_pred -cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCChhHHHHH
Q 001446 923 -GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRL 1001 (1075)
Q Consensus 923 -gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSgGQrQrl 1001 (1075)
.|+++||.++... .+. .....++.+.++++.++|..+..+. ..+||||||||+
T Consensus 85 ~~TV~eNi~~~~~~----------~~~------~~~~~~~~~~~~l~~vgL~~~~~~~----------p~~LSGGq~QRV 138 (363)
T TIGR01186 85 HMTILQNTSLGPEL----------LGW------PEQERKEKALELLKLVGLEEYEHRY----------PDELSGGMQQRV 138 (363)
T ss_pred CCCHHHHHHHHHHH----------cCC------CHHHHHHHHHHHHHhcCCchhhhCC----------hhhCCHHHHHHH
Confidence 5999999863210 000 0000134456778888886554433 356999999999
Q ss_pred HHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCC-chhhccceEEEEcCC
Q 001446 1002 GMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1002 aiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls-~i~~~~~~l~l~~g~ 1065 (1075)
||||||+++|+|||||||||+||+.+...+++.+.+ .++|+|.|+|+++ ..++.|+++.|.+|.
T Consensus 139 ~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~ 207 (363)
T TIGR01186 139 GLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGE 207 (363)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999888876532 4899999999997 578899999997654
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=322.61 Aligned_cols=198 Identities=22% Similarity=0.262 Sum_probs=163.6
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC-----CccEEEeCCcCc-------c
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------D 247 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~-------~ 247 (1075)
..++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+. .
T Consensus 20 ~~l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 20 PAMAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred cEEEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4689999999996 56899999999999999999999999999999999999985 799999998541 2
Q ss_pred ccccEEEEcCCCCCCcCCHHHHhcCCCCCCcc-cCcCCHHHHHHHHHHcCChhH----HhcCCCCcccCCCCCCChhHHH
Q 001446 248 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 322 (1075)
Q Consensus 248 ~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~g~~LSgGqkq 322 (1075)
+++.++|+||+|.+++.|+++|+.++...... ........+.++++.+++... .++. ..+|||||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--------~~~LSgGq~q 170 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDS--------PFRLSGGQQQ 170 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCC--------cccCCHHHHH
Confidence 35679999999998889999999875321110 001112234567888888643 2332 2689999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 323 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 323 Rl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|++|||||+.+|+++||||||++||+.+.+.+.+.+++. ++|+|++||+++.+. .+|++++|++
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~ 237 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFD 237 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999998887652 689999999999865 6999999986
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=319.78 Aligned_cols=198 Identities=22% Similarity=0.231 Sum_probs=162.8
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC-----CccEEEeCCcCc--------
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------- 246 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~-------- 246 (1075)
..|+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 5 ~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 5 IILSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred ceEEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 3689999999996 46799999999999999999999999999999999999763 489999998541
Q ss_pred cccccEEEEcCCCCCCcCCHHHHhcCCCCCCccc-CcCCHHHHHHHHHHcCChhH----HhcCCCCcccCCCCCCChhHH
Q 001446 247 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 321 (1075)
Q Consensus 247 ~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~g~~LSgGqk 321 (1075)
..++.++|+||++.++..|++||+.++....... ....++.+.++++.+++.+. .++. ..+||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~ 155 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDS--------ALSLSGGQQ 155 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcC--------hhhCCHHHH
Confidence 2346799999999988889999998764321111 11123456677888877532 2332 368999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 322 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 322 qRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
||++||||++.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+. .+|++++|++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~ 223 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYL 223 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEEC
Confidence 999999999999999999999999999999999888764 3689999999999885 6999999986
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=318.43 Aligned_cols=185 Identities=25% Similarity=0.307 Sum_probs=152.9
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----ccccccEEEEc-CCCCCC-cCCH
Q 001446 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP-QRPYTA-VGTL 266 (1075)
Q Consensus 194 ~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~v~-Q~~~~~-~~tv 266 (1075)
++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|++ |++.++ ..|+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 4579999999999999999999999999999999999999999999998854 12456799998 556665 4699
Q ss_pred HHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCC
Q 001446 267 RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 346 (1075)
Q Consensus 267 ~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~illLDEpts~L 346 (1075)
+||+.+.............+++.++++.+++.+..++.+ ..||||||||++|||||+.+|+++||||||++|
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 184 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPV--------RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGL 184 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 999976432111111112234567888899987777654 689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 347 TTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 347 D~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|+.+.+.+.+.+++ .+.|+|++||+++.+. .+|++++|++
T Consensus 185 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~ 229 (236)
T cd03267 185 DVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDK 229 (236)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 99999999988764 2789999999999874 6999999975
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=330.13 Aligned_cols=206 Identities=18% Similarity=0.163 Sum_probs=162.3
Q ss_pred CCceEEeeeeeeCCCc----cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcc------
Q 001446 834 QDSISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE------ 903 (1075)
Q Consensus 834 ~g~I~f~~V~~~yp~~----~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~------ 903 (1075)
.+.|+++||+++|++. .++|+|+||+|++||.+||+||||||||||+++|.|+++|.+|+|.++|.++..
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 4789999999999754 259999999999999999999999999999999999999999999999988742
Q ss_pred -ccCCcCcEEEEcCCC--CCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCch-hhhhhh
Q 001446 904 -EAGSGCGIFYVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLERE 979 (1075)
Q Consensus 904 -~~~~r~~i~~VpQdP--~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~-~~i~~~ 979 (1075)
...+|.+++||||+| .+|..|+++|+.++.... +. ......+.+.++++.++|. .....
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----------~~------~~~~~~~~~~~ll~~~~L~~~~~~~- 146 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL----------GE------NKQEAYKKVPELLKLVQLPEDYVKR- 146 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc----------CC------CHHHHHHHHHHHHHHcCCChhHhcC-
Confidence 123456799999998 477889999997532100 00 0000112344556666652 22111
Q ss_pred ccCCccccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCc-hhh
Q 001446 980 EVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPAL-IPF 1054 (1075)
Q Consensus 980 ~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~-i~~ 1054 (1075)
....||||||||++|||||+++|++|||||||++||.++...+.+.+++ .++|+|+|+|+++. .++
T Consensus 147 ---------~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~ 217 (289)
T PRK13645 147 ---------SPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRI 217 (289)
T ss_pred ---------ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 1356999999999999999999999999999999999999887776543 38999999999985 578
Q ss_pred ccceEEEEcCC
Q 001446 1055 HSLELRLIDGE 1065 (1075)
Q Consensus 1055 ~~~~l~l~~g~ 1065 (1075)
.|+++.+.+|.
T Consensus 218 ~d~i~~l~~G~ 228 (289)
T PRK13645 218 ADEVIVMHEGK 228 (289)
T ss_pred CCEEEEEECCE
Confidence 99999997764
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=320.09 Aligned_cols=199 Identities=23% Similarity=0.291 Sum_probs=163.2
Q ss_pred CCccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC-----CccEEEeCCcCc------
Q 001446 178 EANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS------ 246 (1075)
Q Consensus 178 ~~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~------ 246 (1075)
+...|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 17 ~~~~l~~~nl~~~~~-~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 17 DHSVFEVEGVKVFYG-GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred CCceEEEeeEEEEeC-CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 345799999999996 45799999999999999999999999999999999999863 699999998541
Q ss_pred --cccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChh----HHhcCCCCcccCCCCCCChhH
Q 001446 247 --DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGE 320 (1075)
Q Consensus 247 --~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGq 320 (1075)
.+++.++|+||++.++..|+.+|+.++...... ....++.+.++++.+++.. ..++. ..+|||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LSgGq 166 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGY-KGNLDELVEDSLRRAAIWEEVKDKLKEK--------GTALSGGQ 166 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCc-hHHHHHHHHHHHHHcccchhhHHHhcCC--------cccCCHHH
Confidence 235689999999988878999999875321110 0112234566777877743 23333 26899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 321 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 321 kqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~~--~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|||++|||||+.+|+++||||||++||+.+...+.+.+++. +.|+|++||+++.+ ..||++++|++
T Consensus 167 ~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 235 (274)
T PRK14265 167 QQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNT 235 (274)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEec
Confidence 99999999999999999999999999999999999988653 68999999999887 47999999973
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=324.27 Aligned_cols=211 Identities=19% Similarity=0.185 Sum_probs=165.6
Q ss_pred CCceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCC-----CCCeEecCCCCCccc----
Q 001446 834 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPV-----VSGSLTKPSQHIDEE---- 904 (1075)
Q Consensus 834 ~g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~-----~sG~I~idg~di~~~---- 904 (1075)
.+.|+++||++.|++ .++|+|+||+|+|||.++|+|+||||||||+++|.|+++| .+|+|.+||.++...
T Consensus 17 ~~~l~~~nl~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 17 EIKMRARDVSVFYGE-KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CceEEEEeEEEEECC-EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 467999999999974 5799999999999999999999999999999999999975 899999999988642
Q ss_pred cCCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCc
Q 001446 905 AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWD 984 (1075)
Q Consensus 905 ~~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gld 984 (1075)
...|.+++||||+|.+|.+|+++|+.++..... .. . .....++.+.++++.+++...+... ++
T Consensus 96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~----------~~---~-~~~~~~~~~~~~l~~~~l~~~~~~~---~~ 158 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHG----------LA---R-SKAELDEIVETSLRKAGLWEEVKDR---LH 158 (267)
T ss_pred HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcc----------cc---c-chHHHHHHHHHHHHHcCCchhhhHH---hh
Confidence 234567999999999999999999975321000 00 0 0000123455667777764322100 11
Q ss_pred cccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCch-hhccceEEE
Q 001446 985 ANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRL 1061 (1075)
Q Consensus 985 t~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i-~~~~~~l~l 1061 (1075)
. ....||||||||++|||||+.+|++|||||||++||..+...+.+.+++ .+.|+|+|+|+++.+ .+.|+++.|
T Consensus 159 ~---~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l 235 (267)
T PRK14235 159 E---PGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFF 235 (267)
T ss_pred C---CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEE
Confidence 1 1356999999999999999999999999999999999999888777654 368999999999876 678999999
Q ss_pred EcCC
Q 001446 1062 IDGE 1065 (1075)
Q Consensus 1062 ~~g~ 1065 (1075)
.+|.
T Consensus 236 ~~G~ 239 (267)
T PRK14235 236 HLGN 239 (267)
T ss_pred ECCE
Confidence 7664
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=325.05 Aligned_cols=201 Identities=22% Similarity=0.201 Sum_probs=160.5
Q ss_pred EEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccC------CcCcE
Q 001446 838 SFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG------SGCGI 911 (1075)
Q Consensus 838 ~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~------~r~~i 911 (1075)
.++||+..|. ..++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+. .+.++
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 4667777775 3568999999999999999999999999999999999999999999999998876421 23579
Q ss_pred EEEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccc
Q 001446 912 FYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 990 (1075)
Q Consensus 912 ~~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 990 (1075)
+|+||+|.+|. .|+++|+.++.... +. .....++.+.++++.++|.+..... .
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~ 158 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQ----------GV------PRAEREERAAEALELVGLEGWEHKY----------P 158 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhc----------CC------CHHHHHHHHHHHHHHcCCHhHhhCC----------c
Confidence 99999999985 69999997532100 00 0000123456677788775544333 2
Q ss_pred cCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 991 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 991 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
..||||||||++|||||+++|+||||||||++||..+...+.+.+++ .|+|+|+++|+++.+ ++.|+++.|.+|.
T Consensus 159 ~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~ 238 (269)
T cd03294 159 DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGR 238 (269)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 46999999999999999999999999999999999999888776643 379999999999864 7899999997664
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=325.75 Aligned_cols=204 Identities=19% Similarity=0.221 Sum_probs=167.0
Q ss_pred ceEEeeeeeeCCC-----ccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc---cCC
Q 001446 836 SISFSKLDIITPS-----QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE---AGS 907 (1075)
Q Consensus 836 ~I~f~~V~~~yp~-----~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~---~~~ 907 (1075)
-|+++||++.|++ .+++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++... ...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 4899999999974 25799999999999999999999999999999999999999999999999988653 234
Q ss_pred cCcEEEEcCCCC--CCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcc
Q 001446 908 GCGIFYVPQRPY--TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 985 (1075)
Q Consensus 908 r~~i~~VpQdP~--Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 985 (1075)
|.+++||||+|. +|.-|+.+|+.++.... +. .....++.+.++++.++|.+...+.
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~gL~~~~~~~------ 141 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENL----------GI------PPEEIRERVDESLKKVGMYEYRRHA------ 141 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhc----------CC------CHHHHHHHHHHHHHHCCCHhHhhCC------
Confidence 667999999994 67678999997642100 00 0001134466777888886555443
Q ss_pred ccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCchhhccceEEE
Q 001446 986 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRL 1061 (1075)
Q Consensus 986 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i~~~~~~l~l 1061 (1075)
...||||||||++|||||+++|++|||||||++||..+...+.+.+++ .++|+|+|+|+++.+...|+++.|
T Consensus 142 ----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l 217 (280)
T PRK13633 142 ----PHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVM 217 (280)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEE
Confidence 246999999999999999999999999999999999999888776643 389999999999988889999999
Q ss_pred EcCC
Q 001446 1062 IDGE 1065 (1075)
Q Consensus 1062 ~~g~ 1065 (1075)
.+|.
T Consensus 218 ~~G~ 221 (280)
T PRK13633 218 DSGK 221 (280)
T ss_pred ECCE
Confidence 7765
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=328.46 Aligned_cols=203 Identities=24% Similarity=0.297 Sum_probs=162.0
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc-cCCcCcEEEE
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYV 914 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~-~~~r~~i~~V 914 (1075)
.|+++||++.|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++... ...|.+++|+
T Consensus 4 ~i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 4 AIDLVGVSKSYGD-KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred EEEEEeEEEEeCC-eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEE
Confidence 4899999999964 5699999999999999999999999999999999999999999999999987643 2346679999
Q ss_pred cCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCC
Q 001446 915 PQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 993 (1075)
Q Consensus 915 pQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~L 993 (1075)
||+|.+|. .|+++|+.+.... .+.. .......+.++++.++|.+.. +.. ...|
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~~----------~~~~------~~~~~~~~~~ll~~~~l~~~~-------~~~---~~~L 136 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGRY----------FGMS------TREIEAVIPSLLEFARLESKA-------DVR---VALL 136 (303)
T ss_pred eccccCCcCCcHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHCCChhHh-------cCc---hhhC
Confidence 99999885 6999999641100 0000 000012334566666664332 222 2469
Q ss_pred ChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 994 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 994 SgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
|||||||++|||||+++|++|||||||++||+.+...+.+.+++ .|+|+|+++|+++.+ +++|+++.|.+|.
T Consensus 137 SgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 137 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGR 212 (303)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999888776643 489999999999866 6899999997664
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=301.34 Aligned_cols=197 Identities=28% Similarity=0.393 Sum_probs=168.4
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc-------cccccEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------~~~~~i~ 253 (1075)
.++++++++++ ++-.+++|+||++++||+++|+||||+|||||+++|.|+++|++|+|.++|.+- -.+..|+
T Consensus 4 lL~v~~l~k~F-GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 4 LLEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeeccceeec-CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 47899999998 467899999999999999999999999999999999999999999999999751 1245688
Q ss_pred EEcCCCCCCcC-CHHHHhcCCCCCC------------cccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhH
Q 001446 254 YVPQRPYTAVG-TLRDQLIYPLTSD------------QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGE 320 (1075)
Q Consensus 254 ~v~Q~~~~~~~-tv~~ni~~~~~~~------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGq 320 (1075)
--||.+-+|.. ||.||+..+.... ........++..++|+.+||.+..+... .+||+||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A--------~~LsyG~ 154 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA--------GNLSYGQ 154 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh--------hcCChhH
Confidence 99999988775 9999998763211 0011223456778999999999888754 6899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 321 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 321 kqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
|+|+.|||||+.+|++|+||||.+||.+....++.+.+++ .|.|+++|-||++.+ ..||||++|+.
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~ 225 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNY 225 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccC
Confidence 9999999999999999999999999999999888877653 369999999999987 57999999986
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=323.20 Aligned_cols=207 Identities=24% Similarity=0.294 Sum_probs=165.3
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEE
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFY 913 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~ 913 (1075)
.|+++||++.|++ +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++... ..+|..++|
T Consensus 11 ~l~i~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 11 TFALRNVSFRVPG-RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred eEEEeeEEEEECC-EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 5899999999974 5799999999999999999999999999999999999999999999999988654 234567999
Q ss_pred EcCCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccC
Q 001446 914 VPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 992 (1075)
Q Consensus 914 VpQdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 992 (1075)
+||+|.++.+ |+++|+.++...... .. + ......++.+.++++.+++.+..... ...
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~---~~---~------~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~ 147 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWHG---AL---G------RFGAADREKVEEAISLVGLKPLAHRL----------VDS 147 (265)
T ss_pred eccCCCCCCCccHHHHHHhCcccccc---cc---c------CCCHHHHHHHHHHHHHcCCHHHhcCC----------ccc
Confidence 9999877665 999999864310000 00 0 00001134466777888775443322 246
Q ss_pred CChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
||||||||++||||++.+|+||||||||++||..+...+.+.+++ .++|+|+|+|+++.+ ++.|+++.|.+|.
T Consensus 148 LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~ 225 (265)
T PRK10575 148 LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGE 225 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 999999999999999999999999999999999998877776543 389999999999876 6899999997664
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=322.48 Aligned_cols=208 Identities=18% Similarity=0.207 Sum_probs=162.9
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCC-----CCCCeEecCCCCCccc----cC
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP-----VVSGSLTKPSQHIDEE----AG 906 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~-----~~sG~I~idg~di~~~----~~ 906 (1075)
.|+++||+++|++ +++|+|+||+|++||.++|+|+||||||||+++|.|+++ |++|+|.+||.++... ..
T Consensus 6 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 6 KMEARGLSFFYGD-FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred EEEEeeeEEEECC-eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 5899999999964 569999999999999999999999999999999999975 5899999999988642 13
Q ss_pred CcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccc
Q 001446 907 SGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 986 (1075)
Q Consensus 907 ~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~ 986 (1075)
.|.+++||||+|.+|++|+++|+.++... .+.. .....++.+.++++.+++...+... ++
T Consensus 85 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~----------~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~---~~-- 144 (253)
T PRK14242 85 LRRRVGMVFQKPNPFPKSIFENVAYGLRV----------NGVK-----DKAYLAERVERSLRHAALWDEVKDR---LH-- 144 (253)
T ss_pred HhhcEEEEecCCCCCcCcHHHHHHHHHHH----------cCCC-----CHHHHHHHHHHHHHHcCCchhhhHH---hh--
Confidence 45679999999999999999999753210 0000 0000123445566666663321110 01
Q ss_pred cccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCch-hhccceEEEEc
Q 001446 987 LNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLID 1063 (1075)
Q Consensus 987 ~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i-~~~~~~l~l~~ 1063 (1075)
.....||||||||++||||++++|+||||||||++||..+...+.+.+++ .++|||+|+|+++.+ ++.|+++.|.+
T Consensus 145 -~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~ 223 (253)
T PRK14242 145 -ESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYM 223 (253)
T ss_pred -CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEEC
Confidence 12356999999999999999999999999999999999999888777654 478999999999866 78999999977
Q ss_pred CC
Q 001446 1064 GE 1065 (1075)
Q Consensus 1064 g~ 1065 (1075)
|.
T Consensus 224 G~ 225 (253)
T PRK14242 224 GK 225 (253)
T ss_pred CE
Confidence 64
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=320.27 Aligned_cols=198 Identities=22% Similarity=0.248 Sum_probs=162.9
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC-----CccEEEeCCcCc--------
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------- 246 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~-------- 246 (1075)
..++++|+++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYYN-TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEEC-CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 3689999999985 46799999999999999999999999999999999999985 489999998641
Q ss_pred cccccEEEEcCCCCCCcCCHHHHhcCCCCCCcc-cCcCCHHHHHHHHHHcCChh----HHhcCCCCcccCCCCCCChhHH
Q 001446 247 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 321 (1075)
Q Consensus 247 ~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGqk 321 (1075)
.+++.++|+||++.++..|++||+.++...... .....++.+.++++.+++.+ ..++. ...||||||
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~ 156 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKS--------ALGLSGGQQ 156 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCC--------cccCCHHHH
Confidence 234579999999998889999999865321110 01112344667888888853 33333 368999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 322 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 322 qRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+. .||++++|+.
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~ 224 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFST 224 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEec
Confidence 999999999999999999999999999999999888764 3689999999999875 6999999973
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=317.51 Aligned_cols=202 Identities=21% Similarity=0.280 Sum_probs=165.1
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEcC
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 916 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~VpQ 916 (1075)
|+++|+++.|++ +++|+|+||+|+|||+++|+|+||||||||+++|.|+++|.+|+|.+||.++......+..++++||
T Consensus 1 l~~~~l~~~~~~-~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 578999999975 5799999999999999999999999999999999999999999999999988766444567999999
Q ss_pred CCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCCh
Q 001446 917 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 995 (1075)
Q Consensus 917 dP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 995 (1075)
+|.+|.+ |+++|+.++.... +. .+...+..+.++++.+++.....+. ...||+
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~lS~ 133 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLK----------KL------PKAEIKERVAEALDLVQLEGYANRK----------PSQLSG 133 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhc----------CC------CHHHHHHHHHHHHHHcCCchhhcCC----------hhhCCH
Confidence 9999976 9999997532100 00 0001123455667777775544333 246899
Q ss_pred hHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCc-hhhccceEEEEcCC
Q 001446 996 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPAL-IPFHSLELRLIDGE 1065 (1075)
Q Consensus 996 GQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~-i~~~~~~l~l~~g~ 1065 (1075)
|||||++||||++++|+++||||||++||..+...+.+.+++ .++|+|+++|++.. .++.|+++.+.+|.
T Consensus 134 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~ 208 (232)
T cd03300 134 GQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGK 208 (232)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999888777643 38999999999986 46789999997664
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=301.74 Aligned_cols=166 Identities=26% Similarity=0.386 Sum_probs=147.1
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc-cCCcCcEEEEc
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYVP 915 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~-~~~r~~i~~Vp 915 (1075)
++++||++.|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|.+|+|.+||.++... ...|.+++|+|
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 478999999875 4699999999999999999999999999999999999999999999999988654 23456799999
Q ss_pred CCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCC
Q 001446 916 QRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 994 (1075)
Q Consensus 916 QdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 994 (1075)
|+|.+|.+ |+++|+. ||
T Consensus 80 q~~~~~~~~tv~~~~~--------------------------------------------------------------LS 97 (173)
T cd03230 80 EEPSLYENLTVRENLK--------------------------------------------------------------LS 97 (173)
T ss_pred cCCccccCCcHHHHhh--------------------------------------------------------------cC
Confidence 99998876 8887762 49
Q ss_pred hhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCchh-hccceEEEEcCC
Q 001446 995 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIP-FHSLELRLIDGE 1065 (1075)
Q Consensus 995 gGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i~-~~~~~l~l~~g~ 1065 (1075)
+|||||++||||++++|+++||||||++||..+...+.+.+++ .+.|+|+|+|+.+.+. +.|+++.+.+|.
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGR 172 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999999888776643 4789999999998665 899999997663
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=317.15 Aligned_cols=203 Identities=20% Similarity=0.268 Sum_probs=160.5
Q ss_pred eEEeeeeeeCCCc---cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCC---CCCCeEecCCCCCccccCCcCc
Q 001446 837 ISFSKLDIITPSQ---KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP---VVSGSLTKPSQHIDEEAGSGCG 910 (1075)
Q Consensus 837 I~f~~V~~~yp~~---~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~---~~sG~I~idg~di~~~~~~r~~ 910 (1075)
+.|+||+++||+. +++|+|+||+|++||.++|+||||||||||+++|.|+++ |++|+|.++|.++... ..|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~-~~~~~ 82 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD-QFQKC 82 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChH-Hhccc
Confidence 5799999999874 689999999999999999999999999999999999999 9999999999987642 34567
Q ss_pred EEEEcCCCCCCCc-chhhhhcCCCChH--HHHHHHhhhcCCCcccccccccchHHHHH-HHHhCCchhhhhhhccCCccc
Q 001446 911 IFYVPQRPYTCLG-TLRDQIIYPLSRE--EAELRALKLHGKGEKLVDTTNILDSYLKT-ILEGVRLSYLLEREEVGWDAN 986 (1075)
Q Consensus 911 i~~VpQdP~Lf~g-Tir~NL~~p~~~~--~~~~~a~~~~~~~~~~~~~~~~~d~~i~~-~l~~~~L~~~i~~~~~Gldt~ 986 (1075)
++|+||+|.+|++ |+++|+.++.... ....++ ..+..+.+ .++.+++.+..+.
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~l~~~~~~-------- 139 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDA---------------IRKKRVEDVLLRDLALTRIGGN-------- 139 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchH---------------HHHHHHHHHHHHhhcchhhhcc--------
Confidence 9999999999987 9999997531100 000000 00111222 4555554322211
Q ss_pred cccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCC--CchhhccceEEE
Q 001446 987 LNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRP--ALIPFHSLELRL 1061 (1075)
Q Consensus 987 ~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRl--s~i~~~~~~l~l 1061 (1075)
....||+|||||++||||++++|+||||||||++||..+...+.+.+++ .+.|+|+++|++ ...++.|+++.|
T Consensus 140 --~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l 217 (226)
T cd03234 140 --LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLL 217 (226)
T ss_pred --cccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEE
Confidence 1356999999999999999999999999999999999999888777643 478999999998 477899999999
Q ss_pred EcCC
Q 001446 1062 IDGE 1065 (1075)
Q Consensus 1062 ~~g~ 1065 (1075)
.+|.
T Consensus 218 ~~G~ 221 (226)
T cd03234 218 SSGE 221 (226)
T ss_pred eCCE
Confidence 7653
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=319.42 Aligned_cols=199 Identities=25% Similarity=0.346 Sum_probs=157.2
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccC---CcCcEEE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG---SGCGIFY 913 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~---~r~~i~~ 913 (1075)
|+++||++.|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|.+|+|.+||.++...+. .+.+++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQ-SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCC-eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 578999999975 579999999999999999999999999999999999999999999999998876521 2457999
Q ss_pred EcCCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCC-chhhhhhhccCCcccccccc
Q 001446 914 VPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR-LSYLLEREEVGWDANLNWED 991 (1075)
Q Consensus 914 VpQdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~-L~~~i~~~~~Gldt~~~~g~ 991 (1075)
+||+|.+|.+ |+++|+.++....... ..+...++++.++ +.... +. ...
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~-------------------~~~~~~~~l~~~~~l~~~~-------~~---~~~ 130 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRR-------------------SRKIPDEIYELFPVLKEML-------GR---RGG 130 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcc-------------------hHHHHHHHHHHHHhHHHHh-------hC---Chh
Confidence 9999999986 9999997532100000 0011122333322 11111 11 234
Q ss_pred CCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCchh-hccceEEEEcCC
Q 001446 992 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIP-FHSLELRLIDGE 1065 (1075)
Q Consensus 992 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i~-~~~~~l~l~~g~ 1065 (1075)
.||||||||++||||++++|+++||||||++||..+...+.+.+.+ .++|+|+|+|+++.+. +.|+++.+.+|.
T Consensus 131 ~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~ 209 (230)
T TIGR03410 131 DLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGR 209 (230)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999888777643 3799999999998765 799999997654
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=308.99 Aligned_cols=180 Identities=27% Similarity=0.343 Sum_probs=131.7
Q ss_pred EEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCc-C--------cc------------
Q 001446 189 VVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV-G--------SD------------ 247 (1075)
Q Consensus 189 ~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~-~--------~~------------ 247 (1075)
..|..+...|..+- ..++|++++|+||||-||||-+|+|+|.+.|.=|+-.-+.. + .+
T Consensus 82 HRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~ 160 (591)
T COG1245 82 HRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGE 160 (591)
T ss_pred eeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCC
Confidence 34533333333332 35789999999999999999999999999998886532110 0 00
Q ss_pred c--cccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHH
Q 001446 248 L--NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 325 (1075)
Q Consensus 248 ~--~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~ 325 (1075)
+ -.++-||---|-.+.|+|+|-+.-... .....++.+.++|...+++.. .+|||||-||+|
T Consensus 161 ~r~v~K~QYVd~iPk~~KG~v~elLk~~de---------~g~~devve~l~L~nvl~r~v--------~~LSGGELQr~a 223 (591)
T COG1245 161 LRAVHKPQYVDLIPKVVKGKVGELLKKVDE---------RGKFDEVVERLGLENVLDRDV--------SELSGGELQRVA 223 (591)
T ss_pred cceecchHHHHHHHHHhcchHHHHHHhhhh---------cCcHHHHHHHhcchhhhhhhh--------hhcCchHHHHHH
Confidence 0 012333333455567888887653211 124668889999999988865 689999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHhh-CCeEEEEcC
Q 001446 326 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSLDG 386 (1075)
Q Consensus 326 lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~~-~d~i~~l~~ 386 (1075)
||.++.++++++++|||+|-||...+-.+.+.+++ .+++||+|-||+..+.+ +|.|.++-+
T Consensus 224 Iaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 224 IAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 99999999999999999999999877666555543 47999999999999875 788777754
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=326.06 Aligned_cols=201 Identities=22% Similarity=0.273 Sum_probs=165.2
Q ss_pred ceEEeeeeeeCCC--ccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcE
Q 001446 836 SISFSKLDIITPS--QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGI 911 (1075)
Q Consensus 836 ~I~f~~V~~~yp~--~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i 911 (1075)
-|+++||++.|++ ..++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++... ...|.++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 4899999999974 24699999999999999999999999999999999999999999999999988754 2345679
Q ss_pred EEEcCCC--CCCCcchhhhhcCCCC---hHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccc
Q 001446 912 FYVPQRP--YTCLGTLRDQIIYPLS---REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 986 (1075)
Q Consensus 912 ~~VpQdP--~Lf~gTir~NL~~p~~---~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~ 986 (1075)
+||||+| .++..|+.+||.++.. ...+. ..+.+.++++.++|.++....
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~-------------------~~~~~~~~l~~~~l~~~~~~~------- 137 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREE-------------------MIKRVDEALLAVNMLDFKTRE------- 137 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHH-------------------HHHHHHHHHHHCCCHhHhhCC-------
Confidence 9999998 4678899999976421 00000 012345667777775443322
Q ss_pred cccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCchhhccceEEEE
Q 001446 987 LNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRLI 1062 (1075)
Q Consensus 987 ~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i~~~~~~l~l~ 1062 (1075)
...||||||||++|||||+++|+||||||||++||..+...+.+.+++ .|+|+|+|+|++..+...|+++.|.
T Consensus 138 ---~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~ 214 (277)
T PRK13642 138 ---PARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMK 214 (277)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999888776542 3899999999999888899999997
Q ss_pred cCC
Q 001446 1063 DGE 1065 (1075)
Q Consensus 1063 ~g~ 1065 (1075)
+|.
T Consensus 215 ~G~ 217 (277)
T PRK13642 215 AGE 217 (277)
T ss_pred CCE
Confidence 664
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=319.61 Aligned_cols=200 Identities=20% Similarity=0.246 Sum_probs=160.0
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc---CCcCcEE
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIF 912 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~---~~r~~i~ 912 (1075)
-|+++||++.|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++...+ ..+.+++
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 5 MLSFDKVSAHYGK-IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEEeEEEeeCC-ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 4899999999864 57999999999999999999999999999999999999999999999999887653 2456799
Q ss_pred EEcCCCCCCCc-chhhhhcCCCC-hHHHHHHHhhhcCCCcccccccccchHHHHHHHHhC-CchhhhhhhccCCcccccc
Q 001446 913 YVPQRPYTCLG-TLRDQIIYPLS-REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGV-RLSYLLEREEVGWDANLNW 989 (1075)
Q Consensus 913 ~VpQdP~Lf~g-Tir~NL~~p~~-~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~-~L~~~i~~~~~Gldt~~~~ 989 (1075)
|+||+|.+|.+ |+++|+.++.. ..... .+..+.++++.+ ++.+.. + ..
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~-------------------~~~~~~~~l~~~~~l~~~~-------~---~~ 134 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAERDQ-------------------FQERIKWVYELFPRLHERR-------I---QR 134 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccChhH-------------------HHHHHHHHHHHHHHHHHHH-------h---Cc
Confidence 99999999985 99999986321 00000 011223333333 122111 1 12
Q ss_pred ccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCC-chhhccceEEEEcCC
Q 001446 990 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 990 g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls-~i~~~~~~l~l~~g~ 1065 (1075)
...||||||||++||||++++|+||||||||++||.++...+.+.+++ .++|+|+++|+++ ..++.|+++.|.+|.
T Consensus 135 ~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 214 (237)
T PRK11614 135 AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGH 214 (237)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCE
Confidence 356999999999999999999999999999999999998887776643 4899999999997 678999999997664
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=319.46 Aligned_cols=203 Identities=19% Similarity=0.312 Sum_probs=162.5
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc---CCcCcEEE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIFY 913 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~---~~r~~i~~ 913 (1075)
|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+ ..|.+++|
T Consensus 4 l~~~~l~~~~~~-~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 4 LTAKNLAKAYKG-RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred EEEeCcEEEeCC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 789999999974 57999999999999999999999999999999999999999999999999887653 23567999
Q ss_pred EcCCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccC
Q 001446 914 VPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 992 (1075)
Q Consensus 914 VpQdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 992 (1075)
+||+|.+|.+ |+++|+.++...... . .....+..+.++++.+++...... ....
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~~~~~-------------~--~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~ 137 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDD-------------L--SAEQREDRANELMEEFHIEHLRDS----------MGQS 137 (241)
T ss_pred eccCCcccccCcHHHHHhhhhhcccc-------------c--CHHHHHHHHHHHHHHcCCHHHhhc----------chhh
Confidence 9999999885 999999754210000 0 000112345566677666433221 1356
Q ss_pred CChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCC-chhhccceEEEEcCC
Q 001446 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls-~i~~~~~~l~l~~g~ 1065 (1075)
||||||||++||||++++|++|||||||++||.++...+.+.+++ .++|+|+++|++. ..++.|+++.|.+|.
T Consensus 138 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~ 214 (241)
T PRK10895 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGH 214 (241)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCe
Confidence 999999999999999999999999999999999998877665532 5899999999995 668899999997654
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=326.00 Aligned_cols=204 Identities=24% Similarity=0.276 Sum_probs=162.8
Q ss_pred ceEEeeeeeeCCCc----cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc------c
Q 001446 836 SISFSKLDIITPSQ----KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE------A 905 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~----~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~------~ 905 (1075)
.|+++||+++|++. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... .
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 37899999999742 4799999999999999999999999999999999999999999999999988542 1
Q ss_pred CCcCcEEEEcCCC--CCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCch-hhhhhhccC
Q 001446 906 GSGCGIFYVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLEREEVG 982 (1075)
Q Consensus 906 ~~r~~i~~VpQdP--~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~-~~i~~~~~G 982 (1075)
..+.+++|+||+| .+|..|+++||.++.... +. .....++.+.++++.++|. .+....
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~----------~~------~~~~~~~~~~~~l~~~gL~~~~~~~~--- 142 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF----------GF------SEDEAKEKALKWLKKVGLSEDLISKS--- 142 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHc----------CC------CHHHHHHHHHHHHHHcCCChhHhhCC---
Confidence 2345799999998 578889999997531100 00 0000123345667777774 232221
Q ss_pred CccccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhccce
Q 001446 983 WDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLE 1058 (1075)
Q Consensus 983 ldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~~~ 1058 (1075)
...||||||||++|||||+++|++|||||||++||..+...+.+.+++ .|.|+|+|+|++..+ ++.|++
T Consensus 143 -------~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 143 -------PFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred -------cccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 346999999999999999999999999999999999998887776643 489999999999865 689999
Q ss_pred EEEEcCC
Q 001446 1059 LRLIDGE 1065 (1075)
Q Consensus 1059 l~l~~g~ 1065 (1075)
+.|.+|.
T Consensus 216 ~~l~~G~ 222 (287)
T PRK13641 216 LVLEHGK 222 (287)
T ss_pred EEEECCE
Confidence 9997765
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=323.10 Aligned_cols=204 Identities=19% Similarity=0.234 Sum_probs=162.7
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc-----CCcCc
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSGCG 910 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~-----~~r~~ 910 (1075)
-|+++||++.|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+ ..+.+
T Consensus 7 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 7 LVDMRGVSFTRGN-RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred eEEEeCeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 5899999999964 57999999999999999999999999999999999999999999999999886542 23567
Q ss_pred EEEEcCCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccccc
Q 001446 911 IFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 989 (1075)
Q Consensus 911 i~~VpQdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~ 989 (1075)
++||||+|.+|++ |+++|+.++...... . . ....++.+.+.++.+++.+.....
T Consensus 86 i~~v~q~~~~~~~~tv~enl~~~~~~~~~---------~----~--~~~~~~~~~~~l~~~gl~~~~~~~---------- 140 (269)
T PRK11831 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQ---------L----P--APLLHSTVMMKLEAVGLRGAAKLM---------- 140 (269)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHccC---------C----C--HHHHHHHHHHHHHHcCChhhhhCC----------
Confidence 9999999999986 999999753210000 0 0 000123345567777764332221
Q ss_pred ccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCc-hhhccceEEEEcC
Q 001446 990 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPAL-IPFHSLELRLIDG 1064 (1075)
Q Consensus 990 g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~-i~~~~~~l~l~~g 1064 (1075)
...||||||||++||||++++|++|||||||++||.++...+.+.+++ .++|+|+|+|++.. .++.|+++.|.+|
T Consensus 141 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G 220 (269)
T PRK11831 141 PSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADK 220 (269)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECC
Confidence 246999999999999999999999999999999999999887776643 37999999999975 4679999999776
Q ss_pred C
Q 001446 1065 E 1065 (1075)
Q Consensus 1065 ~ 1065 (1075)
.
T Consensus 221 ~ 221 (269)
T PRK11831 221 K 221 (269)
T ss_pred E
Confidence 4
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=318.64 Aligned_cols=199 Identities=21% Similarity=0.247 Sum_probs=164.1
Q ss_pred CccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC-----CccEEEeCCcCc-------
Q 001446 179 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS------- 246 (1075)
Q Consensus 179 ~~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~------- 246 (1075)
.+.|+++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.+.
T Consensus 14 ~~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 14 QQKSEVNKLNFYYG-GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CceEEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 45799999999996 45799999999999999999999999999999999999875 799999987531
Q ss_pred ---cccccEEEEcCCCCCCcCCHHHHhcCCCCCCccc-CcCCHHHHHHHHHHcCChh----HHhcCCCCcccCCCCCCCh
Q 001446 247 ---DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSL 318 (1075)
Q Consensus 247 ---~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSg 318 (1075)
.+++.++|+||++.++..|++||+.++....... ....++++.++++.+++.+ ..++.+ .+|||
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LS~ 164 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLA--------FNLSG 164 (265)
T ss_pred CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCc--------ccCCH
Confidence 2356799999999988889999998753211110 1112345677788887743 233332 68999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 319 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 319 GqkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|||||++|||||+.+|+++||||||++||+.+...+.+.+++ .+.|+|+|||+++.+. .||++++|++
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~ 235 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYM 235 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999888764 3689999999999884 7999999986
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=314.55 Aligned_cols=200 Identities=21% Similarity=0.257 Sum_probs=163.6
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEEEcC
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 916 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~VpQ 916 (1075)
|+++||++.|++ .+ .|+||+|++||.+||+||||||||||+++|.|+++|.+|+|.+||.++......+.+++|+||
T Consensus 2 l~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 2 LKLTDITWLYHH-LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred eEEEEEEEEECC-cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 689999999974 22 499999999999999999999999999999999999999999999988765434567999999
Q ss_pred CCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCCh
Q 001446 917 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 995 (1075)
Q Consensus 917 dP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSg 995 (1075)
+|.+|.+ |+++|+.++....- ......++.+.++++.+++....... ...|||
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~----------------~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~LS~ 132 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGL----------------KLNAAQREKLHAIARQMGIEDLLARL----------PGQLSG 132 (232)
T ss_pred ccccccCCcHHHHHhccccccc----------------CCCHHHHHHHHHHHHHcCcHHHHhCC----------cccCCH
Confidence 9999986 99999986531100 00001234567778888886554433 246999
Q ss_pred hHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 996 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 996 GQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
|||||++||||++++|+++||||||++||.++...+.+.+++ .++|+|+|+|++..+ .+.|+++.+.+|.
T Consensus 133 G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 207 (232)
T PRK10771 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGR 207 (232)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999887776543 388999999999865 6889999997654
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=315.47 Aligned_cols=181 Identities=22% Similarity=0.292 Sum_probs=151.3
Q ss_pred eeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-ccccccEEEEcCCCCCCc-CCHHHHhcCCCC
Q 001446 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRPYTAV-GTLRDQLIYPLT 275 (1075)
Q Consensus 198 l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-~~~~~~i~~v~Q~~~~~~-~tv~~ni~~~~~ 275 (1075)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .......+|+||++.++. .|++||+.++..
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999864 122234689999998776 599999987521
Q ss_pred C--CcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 001446 276 S--DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 353 (1075)
Q Consensus 276 ~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~illLDEpts~LD~~~~~~ 353 (1075)
. .........+++.++++.+++.+..++.+ .+||||||||++|||||+.+|+++||||||++||+.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 152 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRP--------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGN 152 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHH
Confidence 1 11101112335678899999988777765 6899999999999999999999999999999999999999
Q ss_pred HHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 354 FCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 354 i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
+.+.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 153 l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~ 190 (230)
T TIGR01184 153 LQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTN 190 (230)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeC
Confidence 9887754 3789999999999864 6999999986
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=318.34 Aligned_cols=197 Identities=22% Similarity=0.321 Sum_probs=160.9
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC-----c-c-------
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----S-D------- 247 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~-~------- 247 (1075)
.++++|+++.|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ . .
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 3 LLQVSGLSKSYG-GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred eEEEeeeEEEeC-CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 589999999996 4579999999999999999999999999999999999999999999998753 1 0
Q ss_pred --ccccEEEEcCCCCC---CcCCHHHHhcCCCC-CCcccCcCCHHHHHHHHHHcCCh-hHHhcCCCCcccCCCCCCChhH
Q 001446 248 --LNKEIFYVPQRPYT---AVGTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGE 320 (1075)
Q Consensus 248 --~~~~i~~v~Q~~~~---~~~tv~~ni~~~~~-~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~g~~LSgGq 320 (1075)
+++.++|++|+|.. +..|+.+|+.+... ..........+++.++++.+++. ...++.+ ..|||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--------~~LSgG~ 153 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLP--------RAFSGGM 153 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCc--------hhcCHHH
Confidence 12469999999852 23488888854210 00000011235677889999996 4566654 6899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 321 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 321 kqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|||++|||||+.+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+. .+|++++|++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~ 224 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQ 224 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 9999999999999999999999999999999999887753 3899999999999886 6999999986
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=320.79 Aligned_cols=206 Identities=23% Similarity=0.291 Sum_probs=164.8
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEEE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYV 914 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~V 914 (1075)
|+++|++++|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++...+ ..+..++|+
T Consensus 3 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 3 LRTENLTVGYGT-KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEeEEEEECC-EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 789999999974 57999999999999999999999999999999999999999999999999886542 345579999
Q ss_pred cCCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCC
Q 001446 915 PQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 993 (1075)
Q Consensus 915 pQdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~L 993 (1075)
||++.+|.+ |+++|+.++....... .+. .....+..+.++++.+++.+..... ...|
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~------~~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~L 139 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSL------WGR------LSAEDNARVNQAMEQTRINHLADRR----------LTDL 139 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhh------ccC------CCHHHHHHHHHHHHHcCCHHHHcCC----------cccC
Confidence 999999876 9999998642110000 000 0001123455667777775433222 3569
Q ss_pred ChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 994 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 994 SgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
|||||||++||||++++|++|||||||++||.++...+.+.+++ .++|+|+|+|+++.+ ++.|+++.+.+|.
T Consensus 140 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 215 (255)
T PRK11231 140 SGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGH 215 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCe
Confidence 99999999999999999999999999999999999888776643 489999999999864 6899999997664
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=321.68 Aligned_cols=216 Identities=21% Similarity=0.252 Sum_probs=165.1
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc---CCcCcEE
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIF 912 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~---~~r~~i~ 912 (1075)
.|+++||++.|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++...+ ..+.+++
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 5 LLSVSGLMMRFGG-LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred eEEEeeEEEEECC-EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 4899999999964 57999999999999999999999999999999999999999999999999887652 2345699
Q ss_pred EEcCCCCCCCc-chhhhhcCCCCh--HHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccccc
Q 001446 913 YVPQRPYTCLG-TLRDQIIYPLSR--EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 989 (1075)
Q Consensus 913 ~VpQdP~Lf~g-Tir~NL~~p~~~--~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~ 989 (1075)
|+||+|.+|.+ |+++|+.++... ..+... ...+. .............+.++++.+++.+.... .
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----------~ 150 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFS--GLLKT-PAFRRAESEALDRAATWLERVGLLEHANR----------Q 150 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccccchhhh--hhccc-cccccchhHHHHHHHHHHHhCChhhhhhC----------C
Confidence 99999999986 999999864210 000000 00000 00000000012345566677766443322 1
Q ss_pred ccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCch-hhccceEEEEcC
Q 001446 990 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI-PFHSLELRLIDG 1064 (1075)
Q Consensus 990 g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i-~~~~~~l~l~~g 1064 (1075)
...||||||||++||||++++|++|||||||++||..+...+.+.+.+ .++|+|+|+|+++.+ ++.|+++.+.+|
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 356999999999999999999999999999999999999888776642 389999999999876 789999999776
Q ss_pred C
Q 001446 1065 E 1065 (1075)
Q Consensus 1065 ~ 1065 (1075)
.
T Consensus 231 ~ 231 (255)
T PRK11300 231 T 231 (255)
T ss_pred e
Confidence 5
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=323.83 Aligned_cols=203 Identities=22% Similarity=0.318 Sum_probs=163.3
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc----cCCcCcEE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE----AGSGCGIF 912 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~----~~~r~~i~ 912 (1075)
|+++||+++|++.+++|+|+||+|++||.+||+||||||||||+++|.|+++|.+|+|.++|.+++.. ...+.+|+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 68999999997556799999999999999999999999999999999999999999999999988521 12456799
Q ss_pred EEcCCC--CCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccc
Q 001446 913 YVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 990 (1075)
Q Consensus 913 ~VpQdP--~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 990 (1075)
|+||+| .+|..|+++|+.++... .+.. .....+.+.++++.++|.++.... .
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~----------~~~~------~~~~~~~~~~~l~~~~L~~~~~~~----------~ 135 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLN----------LGLS------KEEVEKRVKEALKAVGMEGFENKP----------P 135 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHCCCchhhcCC----------h
Confidence 999998 57889999999753100 0000 000123355677777774332221 3
Q ss_pred cCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 991 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 991 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
..||||||||++||||++++|++|||||||++||..+...+.+.+++ .++|+|+|+|+++.+ ++.|+++.|.+|.
T Consensus 136 ~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~ 214 (275)
T PRK13639 136 HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGK 214 (275)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 46999999999999999999999999999999999999888776643 489999999999866 5899999998765
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=317.54 Aligned_cols=194 Identities=24% Similarity=0.317 Sum_probs=160.8
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC----CccEEEeCCcCc---c-ccccE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL----VSGHIAKPGVGS---D-LNKEI 252 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~----~~G~i~~~~~~~---~-~~~~i 252 (1075)
.++++|+++.| ++++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+. . .++.+
T Consensus 4 ~l~~~~l~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i 81 (254)
T PRK10418 4 QIELRNIALQA--AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI 81 (254)
T ss_pred EEEEeCeEEEe--ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceE
Confidence 58999999998 46799999999999999999999999999999999999999 999999998641 1 23579
Q ss_pred EEEcCCCC-CC--cCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChh---HHhcCCCCcccCCCCCCChhHHHHHHH
Q 001446 253 FYVPQRPY-TA--VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDELSLGEQQRLGM 326 (1075)
Q Consensus 253 ~~v~Q~~~-~~--~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~~~~g~~LSgGqkqRl~l 326 (1075)
+|+||+|. .+ ..|+.+|+.+...... ....++++.++++.+++.+ ..++.+ .+||||||||++|
T Consensus 82 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~LS~Gq~qrv~l 151 (254)
T PRK10418 82 ATIMQNPRSAFNPLHTMHTHARETCLALG--KPADDATLTAALEAVGLENAARVLKLYP--------FEMSGGMLQRMMI 151 (254)
T ss_pred EEEecCCccccCccccHHHHHHHHHHHcC--CChHHHHHHHHHHHcCCCChhhhhhcCC--------cccCHHHHHHHHH
Confidence 99999984 23 2588888754311111 0112356788999999976 345544 6899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 327 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 327 Aral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
||||+.+|++|||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+. .||++++|++
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~ 216 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSH 216 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999998887754 3789999999999874 7999999986
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=318.93 Aligned_cols=198 Identities=20% Similarity=0.252 Sum_probs=163.4
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCC-----ccEEEeCCcCc--------
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVGS-------- 246 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~-----~G~i~~~~~~~-------- 246 (1075)
+.++++|+++.|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 6 ~~l~~~nl~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYD-TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeC-CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 3699999999995 357999999999999999999999999999999999999985 89999988541
Q ss_pred cccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccC-cCCHHHHHHHHHHcCChhH----HhcCCCCcccCCCCCCChhHH
Q 001446 247 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 321 (1075)
Q Consensus 247 ~~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~g~~LSgGqk 321 (1075)
.+++.++|+||++.++..|++||+.++........ ....+++.++++.+++.+. .++. ..+||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~~LSgGq~ 156 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKS--------ALDLSGGQQ 156 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCC--------cccCCHHHH
Confidence 23567999999998888999999986422111000 1113456778888887543 3332 268999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 322 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 322 qRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
||++|||||+++|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+. .||+|++|++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~ 226 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKG 226 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEcc
Confidence 999999999999999999999999999999999887754 3899999999999875 7999999986
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=323.25 Aligned_cols=202 Identities=20% Similarity=0.225 Sum_probs=161.3
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc----cCCcCcEE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE----AGSGCGIF 912 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~----~~~r~~i~ 912 (1075)
|+++||++.|++ +++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++... ...|.+++
T Consensus 2 l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 2 LATSDLWFRYQD-EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred eEEEEEEEEcCC-cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 689999999974 5699999999999999999999999999999999999999999999999988521 12356799
Q ss_pred EEcCCCC--CCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccc
Q 001446 913 YVPQRPY--TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 990 (1075)
Q Consensus 913 ~VpQdP~--Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 990 (1075)
||||+|. +|..|+.+|+.++... .+.. .......+.++++.+++.+.... ..
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~----------~~~~------~~~~~~~~~~~l~~~~l~~~~~~----------~~ 134 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRN----------LGVP------EAEITRRVDEALTLVDAQHFRHQ----------PI 134 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHcCCHhHhcC----------Cc
Confidence 9999986 5778899999753110 0000 00012234556677776443221 13
Q ss_pred cCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 991 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 991 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
..||||||||++|||||+++|+||||||||++||.++...+.+.+++ .++|+|+|+|++..+ ++.|+++.|.+|.
T Consensus 135 ~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~ 213 (271)
T PRK13638 135 QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQ 213 (271)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 46999999999999999999999999999999999999888776643 489999999999876 7899999997765
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=316.81 Aligned_cols=195 Identities=21% Similarity=0.301 Sum_probs=159.6
Q ss_pred CCceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccCCcCcEEE
Q 001446 834 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913 (1075)
Q Consensus 834 ~g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~~r~~i~~ 913 (1075)
.+.|+++|++++ .+++|+|+||+|++||++||+|+||||||||+++|.|+++|.+|+|.++| +++|
T Consensus 37 ~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-----------~i~y 102 (282)
T cd03291 37 DNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-----------RISF 102 (282)
T ss_pred CCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----------EEEE
Confidence 457999999995 35799999999999999999999999999999999999999999999988 3999
Q ss_pred EcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc-ccccC
Q 001446 914 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDI 992 (1075)
Q Consensus 914 VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~-~~g~~ 992 (1075)
+||+|.+|++|+++|+.++....+ ..+.+.++.+++.+.+...+.++++.. ..+..
T Consensus 103 v~q~~~l~~~tv~enl~~~~~~~~-----------------------~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~ 159 (282)
T cd03291 103 SSQFSWIMPGTIKENIIFGVSYDE-----------------------YRYKSVVKACQLEEDITKFPEKDNTVLGEGGIT 159 (282)
T ss_pred EeCcccccccCHHHHhhcccccCH-----------------------HHHHHHHHHhCCHHHHHhccccccceecCCCCc
Confidence 999999999999999986422111 111223344444444555556666554 23568
Q ss_pred CChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHH-HH--hcCceEEEecCCCCchhhccceEEEEcCC
Q 001446 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRL-AK--DMGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~-~~--~~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
||+|||||++|||||+++|+||||||||++||.++...+.+. ++ ..+.|+|+|+|++..+...|+++.|.+|.
T Consensus 160 LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~ 235 (282)
T cd03291 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGS 235 (282)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999998876553 22 24789999999999889999999997765
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=283.68 Aligned_cols=197 Identities=22% Similarity=0.265 Sum_probs=166.4
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC---------------
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--------------- 245 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~--------------- 245 (1075)
.++++|+.+.|. ...+|+++||+.++|+++.|+|.|||||||+||||.=+..|+.|.|.++|..
T Consensus 6 ~l~v~dlHK~~G-~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 6 ALEVEDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred ceehhHHHhhcc-cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 588999999884 4679999999999999999999999999999999999999999999999852
Q ss_pred ----ccccccEEEEcCCCCCCc-CCHHHHhcCC-CCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChh
Q 001446 246 ----SDLNKEIFYVPQRPYTAV-GTLRDQLIYP-LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLG 319 (1075)
Q Consensus 246 ----~~~~~~i~~v~Q~~~~~~-~tv~~ni~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgG 319 (1075)
..+|.+.++|+|+..++. .|+.||+.-. ...-........++....|.++|+.+..+.+| ..||||
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP--------~~LSGG 156 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP--------AHLSGG 156 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc--------cccCch
Confidence 124668999999998876 5999999742 11111112223456778899999999999998 689999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH---HHhcCCeEEEEecChhhHhh-CCeEEEEcC
Q 001446 320 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAK---VRAMGTSCITISHRPALVAF-HDVVLSLDG 386 (1075)
Q Consensus 320 qkqRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~---l~~~~~t~i~vtH~~~~~~~-~d~i~~l~~ 386 (1075)
||||++|||||..+|+++++|||||+|||+..-++++. |.+.|+|.++|||.+.+.+. ..+++.+.+
T Consensus 157 QQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~ 227 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQ 227 (256)
T ss_pred HHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeec
Confidence 99999999999999999999999999999988776554 55679999999999999875 678888875
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=328.85 Aligned_cols=206 Identities=23% Similarity=0.301 Sum_probs=162.4
Q ss_pred ceEEeeeeeeCCC------------ccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcc
Q 001446 836 SISFSKLDIITPS------------QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE 903 (1075)
Q Consensus 836 ~I~f~~V~~~yp~------------~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~ 903 (1075)
-|+++|++++|+. ...+|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++..
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 5899999998863 2469999999999999999999999999999999999999999999999999876
Q ss_pred cc-----CCcCcEEEEcCCC--CCC-CcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchh-
Q 001446 904 EA-----GSGCGIFYVPQRP--YTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY- 974 (1075)
Q Consensus 904 ~~-----~~r~~i~~VpQdP--~Lf-~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~- 974 (1075)
.+ ..|.+|+||+|+| .|| ..|+++||.++...... +. .....++.+.++++.++|..
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~--------~~------~~~~~~~~~~~~l~~vgl~~~ 153 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP--------KL------SRQEVKDRVKAMMLKVGLLPN 153 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc--------CC------CHHHHHHHHHHHHHHcCCChH
Confidence 52 2456799999999 466 47999999753210000 00 00001234456777777732
Q ss_pred hhhhhccCCccccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCC
Q 001446 975 LLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPA 1050 (1075)
Q Consensus 975 ~i~~~~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls 1050 (1075)
...+ ....||||||||++|||||+.+|++||||||||+||..++..+.+++++ .+.|+|+|+|+++
T Consensus 154 ~~~~----------~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~ 223 (331)
T PRK15079 154 LINR----------YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA 223 (331)
T ss_pred HhcC----------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 2111 2357999999999999999999999999999999999999887776543 4899999999999
Q ss_pred chh-hccceEEEEcCC
Q 001446 1051 LIP-FHSLELRLIDGE 1065 (1075)
Q Consensus 1051 ~i~-~~~~~l~l~~g~ 1065 (1075)
.+. +.|++++|.+|.
T Consensus 224 ~~~~~~dri~vl~~G~ 239 (331)
T PRK15079 224 VVKHISDRVLVMYLGH 239 (331)
T ss_pred HHHHhCCEEEEEECCE
Confidence 775 799999997653
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=302.15 Aligned_cols=167 Identities=26% Similarity=0.292 Sum_probs=148.3
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc----CCcCcEE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA----GSGCGIF 912 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~----~~r~~i~ 912 (1075)
|+++|++++|++ +++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++...+ ..+..++
T Consensus 1 i~~~~l~~~~~~-~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYGQ-KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEECC-eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 578999999965 57999999999999999999999999999999999999999999999999887642 3456799
Q ss_pred EEcCCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccccccc
Q 001446 913 YVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 991 (1075)
Q Consensus 913 ~VpQdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 991 (1075)
|+||+|.+|.+ |+++|+.+.
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~----------------------------------------------------------- 100 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG----------------------------------------------------------- 100 (178)
T ss_pred EEecCCccCCCCCHHHheeec-----------------------------------------------------------
Confidence 99999998864 999988521
Q ss_pred CCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---c-CceEEEecCCCCchh-hccceEEEEcC
Q 001446 992 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---M-GITFVTSSQRPALIP-FHSLELRLIDG 1064 (1075)
Q Consensus 992 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~-~~TvI~IaHRls~i~-~~~~~l~l~~g 1064 (1075)
||+|||||++||||++++|+++||||||++||.++...+.+.+++ . ++|+|+|+|++..+. +.|+++.+++|
T Consensus 101 -lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g 177 (178)
T cd03229 101 -LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177 (178)
T ss_pred -CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 599999999999999999999999999999999999888776643 3 799999999998776 89999999766
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=317.34 Aligned_cols=198 Identities=29% Similarity=0.359 Sum_probs=163.2
Q ss_pred ccEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCC------cC------cc
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG------VG------SD 247 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~------~~------~~ 247 (1075)
+.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+ ..
T Consensus 9 ~~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 9 DVFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred hheeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 4799999999995 56799999999999999999999999999999999999999998777665 22 12
Q ss_pred ccccEEEEcCCCCCCcC-CHHHHhcCCCCCCccc-CcCCHHHHHHHHHHcCChh----HHhcCCCCcccCCCCCCChhHH
Q 001446 248 LNKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 321 (1075)
Q Consensus 248 ~~~~i~~v~Q~~~~~~~-tv~~ni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGqk 321 (1075)
.++.++|+||+|.++.+ |+++|+.++....... ......++.++++.+++.. ..++.+ ..||||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~LS~G~~ 159 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPA--------SQLSGGQQ 159 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCc--------ccCCHHHH
Confidence 35679999999988765 9999998753211111 1111244677888888863 334433 68999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhH-hhCCeEEEEcC
Q 001446 322 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 322 qRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
||++||||++.+|+++||||||++||+.+++.+.+.+.+ .+.|+|++||+++.+ ..||++++|++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~ 227 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYN 227 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999888764 368999999999988 57999999985
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=275.14 Aligned_cols=205 Identities=26% Similarity=0.355 Sum_probs=171.1
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------------ccc
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------------SDL 248 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------------~~~ 248 (1075)
.|.++|+++.|. ...+|-|++|+-+.||.+.+.||||+|||||+|.|.=+..|.+|+..+.|.. .++
T Consensus 2 sirv~~in~~yg-~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFYG-AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEcccccccc-cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 378999999885 4678999999999999999999999999999999999999999999987642 246
Q ss_pred cccEEEEcCCCCCCc-CCHHHHhcCC-CCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHH
Q 001446 249 NKEIFYVPQRPYTAV-GTLRDQLIYP-LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 326 (1075)
Q Consensus 249 ~~~i~~v~Q~~~~~~-~tv~~ni~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~l 326 (1075)
|+++|+|+|.-.+.+ .||.||+.-. ....+..+.....+..++|+++.|.++.|++| -.|||||+|||||
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p--------lhlsggqqqrvai 152 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP--------LHLSGGQQQRVAI 152 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc--------eecccchhhhHHH
Confidence 789999999988765 5999999742 22222222233456778999999999999999 5899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCCeEEEEecChhhHh-hCCeEEEEcCCCcEEEecCC
Q 001446 327 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDGEGEWRVHDKR 396 (1075)
Q Consensus 327 Aral~~~p~illLDEpts~LD~~~~~~i~~~l~---~~~~t~i~vtH~~~~~~-~~d~i~~l~~~g~~~~~~~~ 396 (1075)
||||+.+|++|++||||++|||+-...+.+.++ ..|.|-++|||..+..+ .+.+++.|++ +.+++.+.
T Consensus 153 aralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~--g~ive~g~ 224 (242)
T COG4161 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMEN--GHIVEQGD 224 (242)
T ss_pred HHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeec--CeeEeecc
Confidence 999999999999999999999998877766655 45999999999999885 5899999986 34555443
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=315.96 Aligned_cols=199 Identities=21% Similarity=0.191 Sum_probs=164.5
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCC-----CccEEEeCCcCc--------c
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS--------D 247 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~-----~~G~i~~~~~~~--------~ 247 (1075)
.+.+++++++|. +.++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+. .
T Consensus 8 ~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 86 (261)
T PRK14263 8 VMDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVV 86 (261)
T ss_pred eEEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHh
Confidence 588999999885 46799999999999999999999999999999999999986 799999998641 2
Q ss_pred ccccEEEEcCCCCCCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHH
Q 001446 248 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 327 (1075)
Q Consensus 248 ~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lA 327 (1075)
+++.++|+||+++++..|++||+.++...... .....+++.++++.+++.+.+.... .....+||||||||++||
T Consensus 87 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~----~~~~~~LS~G~~qrv~la 161 (261)
T PRK14263 87 VRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKL----KVSGLSLSGGQQQRLCIA 161 (261)
T ss_pred hhhceEEEecCCccccccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhh----hCCcccCCHHHHHHHHHH
Confidence 35679999999998889999999876432111 1112346778899998865432211 012368999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhH-hhCCeEEEEc
Q 001446 328 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLD 385 (1075)
Q Consensus 328 ral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~-~~~d~i~~l~ 385 (1075)
|||+++|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+ ..||++++|+
T Consensus 162 ral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~ 222 (261)
T PRK14263 162 RAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFS 222 (261)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEe
Confidence 999999999999999999999999999998865 378999999999976 5799999996
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=323.21 Aligned_cols=204 Identities=20% Similarity=0.252 Sum_probs=161.2
Q ss_pred eEEeeeeeeCCC--------ccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc---
Q 001446 837 ISFSKLDIITPS--------QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--- 905 (1075)
Q Consensus 837 I~f~~V~~~yp~--------~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--- 905 (1075)
|+++||++.|++ .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 789999999863 367999999999999999999999999999999999999999999999999887652
Q ss_pred --CCcCcEEEEcCCCC--CC-CcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCch-hhhhhh
Q 001446 906 --GSGCGIFYVPQRPY--TC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS-YLLERE 979 (1075)
Q Consensus 906 --~~r~~i~~VpQdP~--Lf-~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~-~~i~~~ 979 (1075)
..|.+++||||+|. ++ ..|+++||.++.... .+. .....++.+.++++.+++. .....
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~---------~~~------~~~~~~~~~~~~l~~~gl~~~~~~~- 146 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL---------TSL------DESEQKARIAELLDMVGLRSEDADK- 146 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh---------cCC------CHHHHHHHHHHHHHHcCCChhhhhC-
Confidence 13567999999983 44 479999996431100 000 0001134456677777763 22111
Q ss_pred ccCCccccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCchh-h
Q 001446 980 EVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIP-F 1054 (1075)
Q Consensus 980 ~~Gldt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i~-~ 1054 (1075)
....||||||||++||||++++|+||||||||++||.++...+.+.+++ .++|+|+|+|++..+. +
T Consensus 147 ---------~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~ 217 (265)
T TIGR02769 147 ---------LPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSF 217 (265)
T ss_pred ---------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHH
Confidence 1356999999999999999999999999999999999998877766643 3899999999998774 8
Q ss_pred ccceEEEEcCC
Q 001446 1055 HSLELRLIDGE 1065 (1075)
Q Consensus 1055 ~~~~l~l~~g~ 1065 (1075)
.|+++.|.+|.
T Consensus 218 ~d~i~~l~~G~ 228 (265)
T TIGR02769 218 CQRVAVMDKGQ 228 (265)
T ss_pred hcEEEEEeCCE
Confidence 99999997664
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=280.10 Aligned_cols=191 Identities=20% Similarity=0.307 Sum_probs=157.6
Q ss_pred CccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc--cCCcCcEEEEcCCCCCCCcch
Q 001446 848 SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTL 925 (1075)
Q Consensus 848 ~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~--~~~r~~i~~VpQdP~Lf~gTi 925 (1075)
++.++|+++||++.+||.++|.||||||||||++.++-+..|++|.++.-|.|++.. ...|++++|+-|.|.||.+||
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 467899999999999999999999999999999999999999999999999999988 468999999999999999999
Q ss_pred hhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCChhHHHHHHHHH
Q 001446 926 RDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMAR 1005 (1075)
Q Consensus 926 r~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LSgGQrQrlaiAR 1005 (1075)
.+|+.+|..-... ....+...+.|+.++|.+-+ |+.. -.+||||||||+||+|
T Consensus 94 eDNlifP~~~r~r------------------r~dr~aa~~llar~~l~~~~------L~k~---it~lSGGE~QriAliR 146 (223)
T COG4619 94 EDNLIFPWQIRNR------------------RPDRAAALDLLARFALPDSI------LTKN---ITELSGGEKQRIALIR 146 (223)
T ss_pred hhccccchHHhcc------------------CCChHHHHHHHHHcCCchhh------hcch---hhhccchHHHHHHHHH
Confidence 9999988531100 00111223345555553221 1222 2469999999999999
Q ss_pred HhhcCCCEeEeeccCCCCCHHHHHHHHHHH----HhcCceEEEecCCCC-chhhccceEEEEcCC
Q 001446 1006 LFFHKPKFGILDECTNATSVDVEEQLYRLA----KDMGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1006 AlLr~p~ILiLDEATSalD~~~e~~i~~~~----~~~~~TvI~IaHRls-~i~~~~~~l~l~~g~ 1065 (1075)
-|---|+||+|||+|||||..+.+.|.+++ ++.+..++=|+|..+ .++++++++.+.+|.
T Consensus 147 ~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~ 211 (223)
T COG4619 147 NLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGH 211 (223)
T ss_pred HhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCc
Confidence 999999999999999999999887776665 456899999999997 499999999998775
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=324.74 Aligned_cols=205 Identities=22% Similarity=0.309 Sum_probs=167.2
Q ss_pred CceEEeeeeeeCCC-ccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCC---CeEecCCCCCcccc--CCc
Q 001446 835 DSISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVS---GSLTKPSQHIDEEA--GSG 908 (1075)
Q Consensus 835 g~I~f~~V~~~yp~-~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~s---G~I~idg~di~~~~--~~r 908 (1075)
+.|+++|+++.|++ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++ |+|.++|.++.... ..+
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 46999999999975 3579999999999999999999999999999999999999987 89999999887542 345
Q ss_pred CcEEEEcCCC--CCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccc
Q 001446 909 CGIFYVPQRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 986 (1075)
Q Consensus 909 ~~i~~VpQdP--~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~ 986 (1075)
.+++||||+| .++..|+++||.|+.... +. .....++.+.++++.++|.+.....
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~----------~~------~~~~~~~~~~~~l~~~~L~~~~~~~------- 140 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENR----------AV------PRPEMIKIVRDVLADVGMLDYIDSE------- 140 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhC----------CC------CHHHHHHHHHHHHHHCCChhHhcCC-------
Confidence 6799999999 467889999997632100 00 0000123456677888876544333
Q ss_pred cccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCchhhccceEEEE
Q 001446 987 LNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRLI 1062 (1075)
Q Consensus 987 ~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i~~~~~~l~l~ 1062 (1075)
...||+|||||++|||||+++|++|||||||++||..+...+.+.++. .++|||+|+|+++.+.+.|+++.|.
T Consensus 141 ---~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~ 217 (282)
T PRK13640 141 ---PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLD 217 (282)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEE
Confidence 256999999999999999999999999999999999999887776643 3899999999999889999999997
Q ss_pred cCC
Q 001446 1063 DGE 1065 (1075)
Q Consensus 1063 ~g~ 1065 (1075)
+|.
T Consensus 218 ~G~ 220 (282)
T PRK13640 218 DGK 220 (282)
T ss_pred CCE
Confidence 775
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=308.48 Aligned_cols=195 Identities=24% Similarity=0.298 Sum_probs=159.5
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc-cCCcCcEEEEc
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYVP 915 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~-~~~r~~i~~Vp 915 (1075)
|+++|+++.|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ...+.+++++|
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 2 LEARNLACERDE-RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred eEEEEEEEEECC-EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 688999999865 5699999999999999999999999999999999999999999999999988754 23456799999
Q ss_pred CCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCC
Q 001446 916 QRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 994 (1075)
Q Consensus 916 QdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 994 (1075)
|+|.+++ .|+++|+.++.... + ...++.+.++++.++|.+..... ...||
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~----------~---------~~~~~~~~~~l~~~gl~~~~~~~----------~~~LS 131 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLH----------G---------PGDDEALWEALAQVGLAGFEDVP----------VRQLS 131 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhc----------C---------ccHHHHHHHHHHHcCCHHHhhCC----------hhhcC
Confidence 9998876 69999997532100 0 01134566777888875443221 34699
Q ss_pred hhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhccceEEE
Q 001446 995 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRL 1061 (1075)
Q Consensus 995 gGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~~~l~l 1061 (1075)
||||||++||||++++|++|||||||++||.++...+.+.+++ .+.|+|+|+|+++.+ .|..+++.+
T Consensus 132 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 132 AGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999999999999999999999888877653 488999999999877 566666655
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=303.95 Aligned_cols=186 Identities=20% Similarity=0.252 Sum_probs=157.3
Q ss_pred EEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc-cc-cccEEEEcCCC
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-DL-NKEIFYVPQRP 259 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~-~~-~~~i~~v~Q~~ 259 (1075)
++++|+++.|++ +.+++ +||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .. ++.++|++|++
T Consensus 2 l~~~~l~~~~~~-~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 2 LSLHQLQFNIEQ-KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred eEEEEeeEEECC-cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCc
Confidence 789999999953 45555 9999999999999999999999999999999999999999998641 11 34699999997
Q ss_pred CC-CcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcCCCCEEE
Q 001446 260 YT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 338 (1075)
Q Consensus 260 ~~-~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~~p~ill 338 (1075)
.+ +..|++||+.+..... ...+++.++++.+++.+..++.+ .+||||||||++||||++++|+++|
T Consensus 80 ~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~~rl~la~al~~~p~~ll 146 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEIY-----NSAETLYAAIHYFKLHDLLDEKC--------YSLSSGMQKIVAIARLIACQSDLWL 146 (195)
T ss_pred CCCccCCHHHHHHHHHHhc-----ccHHHHHHHHHHcCCHhhhccCh--------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 65 5679999998753221 12346778889999987777654 6899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHH---hcCCeEEEEecChhhHhhCCeEE
Q 001446 339 LDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVAFHDVVL 382 (1075)
Q Consensus 339 LDEpts~LD~~~~~~i~~~l~---~~~~t~i~vtH~~~~~~~~d~i~ 382 (1075)
|||||++||+.+.+.+.+.++ +.++|+|++||+.+.++.+|.+.
T Consensus 147 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 147 LDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999988775 35899999999999998888653
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=321.82 Aligned_cols=205 Identities=19% Similarity=0.177 Sum_probs=161.5
Q ss_pred CceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCC-----CCCCeEecCCCCCcc--c--c
Q 001446 835 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP-----VVSGSLTKPSQHIDE--E--A 905 (1075)
Q Consensus 835 g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~-----~~sG~I~idg~di~~--~--~ 905 (1075)
..|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++ |++|+|.++|.++.. . .
T Consensus 12 ~~l~i~nl~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 12 IIISLQNVTISYGT-FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred ceEEEEeEEEEECC-EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 46999999999975 569999999999999999999999999999999999987 589999999998753 1 2
Q ss_pred CCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcc
Q 001446 906 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 985 (1075)
Q Consensus 906 ~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 985 (1075)
..|.+++||||+|.+|..|+++||.++..... .....++.+.++++.++++..++. -++.
T Consensus 91 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~-----------------~~~~~~~~~~~~l~~~~l~~~l~~---~~~~ 150 (269)
T PRK14259 91 EVRRRIGMVFQQPNPFPKSIYENIAFGARING-----------------YTGDMDELVERSLRKAAVWDECKD---KLNE 150 (269)
T ss_pred HHhhceEEEccCCccchhhHHHHHhhhhhhcC-----------------CcHHHHHHHHHHHHHhCCcchhhh---hhCC
Confidence 24567999999999999999999986421000 000012334455566555321110 0111
Q ss_pred ccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCC-chhhccceEEEE
Q 001446 986 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPA-LIPFHSLELRLI 1062 (1075)
Q Consensus 986 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls-~i~~~~~~l~l~ 1062 (1075)
....||+|||||++|||||+++|++|||||||++||..+...+.+++++ .+.|+|+|+|++. ..++.|+++.|.
T Consensus 151 ---~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~ 227 (269)
T PRK14259 151 ---SGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFN 227 (269)
T ss_pred ---CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEe
Confidence 2356999999999999999999999999999999999999888877754 3789999999997 457899999997
Q ss_pred c
Q 001446 1063 D 1063 (1075)
Q Consensus 1063 ~ 1063 (1075)
+
T Consensus 228 ~ 228 (269)
T PRK14259 228 A 228 (269)
T ss_pred c
Confidence 6
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=318.63 Aligned_cols=209 Identities=23% Similarity=0.235 Sum_probs=164.2
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCC-----CCCeEecCCCCCcccc--CCc
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPV-----VSGSLTKPSQHIDEEA--GSG 908 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~-----~sG~I~idg~di~~~~--~~r 908 (1075)
.|+++||++.|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++| .+|+|.++|.++...+ ..|
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFGQ-VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEECC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 4889999999975 5699999999999999999999999999999999999974 6999999999887642 345
Q ss_pred CcEEEEcCCCCCC-CcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc
Q 001446 909 CGIFYVPQRPYTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 987 (1075)
Q Consensus 909 ~~i~~VpQdP~Lf-~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 987 (1075)
.+++||||+|.+| ..|+++|+.++..... . . ......++.+.++++.++|...++ ..++..
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~----------~---~-~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~- 143 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNR----------L---V-KSKKELQERVRWALEKAQLWDEVK---DRLDAP- 143 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhcc----------c---c-CCHHHHHHHHHHHHHHcCCCcchh---hhhcCC-
Confidence 6799999999755 5799999975321000 0 0 000011344566777777643221 112222
Q ss_pred ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCch-hhccceEEEEcC
Q 001446 988 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLIDG 1064 (1075)
Q Consensus 988 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i-~~~~~~l~l~~g 1064 (1075)
...||||||||++||||++++|+||||||||++||.++...+.+.+++ .++|+|+|+|+++.+ .+.|+++.|.+|
T Consensus 144 --~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 221 (250)
T PRK14247 144 --AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKG 221 (250)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 346999999999999999999999999999999999999888777654 479999999999876 689999999766
Q ss_pred C
Q 001446 1065 E 1065 (1075)
Q Consensus 1065 ~ 1065 (1075)
.
T Consensus 222 ~ 222 (250)
T PRK14247 222 Q 222 (250)
T ss_pred e
Confidence 5
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=319.61 Aligned_cols=208 Identities=23% Similarity=0.250 Sum_probs=163.4
Q ss_pred CceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCC-----CCCeEecCCCCCccc----c
Q 001446 835 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPV-----VSGSLTKPSQHIDEE----A 905 (1075)
Q Consensus 835 g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~-----~sG~I~idg~di~~~----~ 905 (1075)
..|+++||++.|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... .
T Consensus 11 ~~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 11 PQIKVENLNLWYGE-KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eeEEEeeeEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 36999999999964 5699999999999999999999999999999999999985 799999999988642 1
Q ss_pred CCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcc
Q 001446 906 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 985 (1075)
Q Consensus 906 ~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 985 (1075)
..|.+++||||+|.+|+.|+++|+.++... .+.. ....++.+.++++.+++..... ..++.
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~----------~~~~------~~~~~~~~~~~l~~~~l~~~~~---~~~~~ 150 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRI----------HGAN------KKDLDGVVENALRSAALWDETS---DRLKS 150 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHH----------cCCC------HHHHHHHHHHHHHHcCCCcchh---hhhcC
Confidence 245679999999999999999999753100 0000 0001233455667666532110 11122
Q ss_pred ccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCch-hhccceEEEE
Q 001446 986 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLI 1062 (1075)
Q Consensus 986 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i-~~~~~~l~l~ 1062 (1075)
. ...||||||||++|||||+++|+||||||||++||.++...+.+.+++ .++|+|+|+|++..+ ++.|+++.|.
T Consensus 151 ~---~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~ 227 (258)
T PRK14268 151 P---ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFL 227 (258)
T ss_pred C---hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 2 346999999999999999999999999999999999999888877654 479999999999865 7899999997
Q ss_pred cCC
Q 001446 1063 DGE 1065 (1075)
Q Consensus 1063 ~g~ 1065 (1075)
+|.
T Consensus 228 ~G~ 230 (258)
T PRK14268 228 MGE 230 (258)
T ss_pred CCE
Confidence 664
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=317.27 Aligned_cols=198 Identities=23% Similarity=0.251 Sum_probs=159.7
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCC-----ccEEEeCCcCc--------c
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVGS--------D 247 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~-----~G~i~~~~~~~--------~ 247 (1075)
.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+. .
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 588999999996 468999999999999999999999999999999999999874 89999998541 2
Q ss_pred ccccEEEEcCCCCCCc-CCHHHHhcCCCCCCcc-cCcCCHHHHHHHHHHcCChh----HHhcCCCCcccCCCCCCChhHH
Q 001446 248 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 321 (1075)
Q Consensus 248 ~~~~i~~v~Q~~~~~~-~tv~~ni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~g~~LSgGqk 321 (1075)
+++.++|+||++.++. .|+.||+.++...... ......+.+.+.++.+++.+ ..++. ..+||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~ 154 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTP--------ATGLSGGQQ 154 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCC--------cccCCHHHH
Confidence 3457999999998877 4999999864321110 00011233445566666542 22332 368999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHh-hCCeEEEEcCC
Q 001446 322 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 387 (1075)
Q Consensus 322 qRl~lAral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~~ 387 (1075)
||++|||||+.+|+++||||||++||+.+...+.+.+++ .++|+|++||+++.+. .||++++|+++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVG 223 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999888765 3689999999999886 69999999863
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=318.79 Aligned_cols=206 Identities=24% Similarity=0.310 Sum_probs=165.1
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEEE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYV 914 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~V 914 (1075)
|+++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+.+++|+
T Consensus 2 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAGG-RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEECC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 689999999965 57999999999999999999999999999999999999999999999999887652 335579999
Q ss_pred cCCCC-CCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCC
Q 001446 915 PQRPY-TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 993 (1075)
Q Consensus 915 pQdP~-Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~L 993 (1075)
||+|. .+..|+++|+.++........ .. .....++.+.++++.+++.+..... ...|
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~------~~------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~L 138 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLW------AG------DSPHDAAVVDRALARTELSHLADRD----------MSTL 138 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhc------cC------CCHHHHHHHHHHHHHcCcHhhhcCC----------cccC
Confidence 99996 456899999986421100000 00 0001133566777877775443222 3469
Q ss_pred ChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCch-hhccceEEEEcCC
Q 001446 994 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALI-PFHSLELRLIDGE 1065 (1075)
Q Consensus 994 SgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i-~~~~~~l~l~~g~ 1065 (1075)
|+|||||++||||++.+|+++||||||++||.++...+.+.+++ .+.|+|+|+|+++.+ ++.|+++.|.+|.
T Consensus 139 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~ 214 (256)
T TIGR03873 139 SGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGR 214 (256)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999998887776643 478999999999977 7899999997765
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=317.71 Aligned_cols=202 Identities=23% Similarity=0.328 Sum_probs=162.8
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEEEE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFYV 914 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~~V 914 (1075)
|+++||+++|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|.+|+|.++|.++...+ ..+.+++|+
T Consensus 3 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 3 LEARNLSVRLGG-RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred EEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 789999999975 57999999999999999999999999999999999999999999999999887542 234579999
Q ss_pred cCCCCC-CCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCC
Q 001446 915 PQRPYT-CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDIL 993 (1075)
Q Consensus 915 pQdP~L-f~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~L 993 (1075)
||+|.+ +..|+++|+.++...... .....+..+.++++.+++.+..... ...|
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~~~----------------~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~L 135 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPHGL----------------SRAEDDALVAAALAQVDLAHLAGRD----------YPQL 135 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhcccCC----------------CcHHHHHHHHHHHHHcCCHhHhcCC----------cccC
Confidence 999987 678999999764210000 0000123455677777775433222 3469
Q ss_pred ChhHHHHHHHHHHhh------cCCCEeEeeccCCCCCHHHHHHHHHHHH----hcCceEEEecCCCCch-hhccceEEEE
Q 001446 994 SLGEQQRLGMARLFF------HKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPALI-PFHSLELRLI 1062 (1075)
Q Consensus 994 SgGQrQrlaiARAlL------r~p~ILiLDEATSalD~~~e~~i~~~~~----~~~~TvI~IaHRls~i-~~~~~~l~l~ 1062 (1075)
|||||||++|||||+ ++|++|||||||++||..+...+.+.++ ..+.|||+|+|+++.+ ++.|+++.|.
T Consensus 136 SgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 215 (258)
T PRK13548 136 SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLH 215 (258)
T ss_pred CHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEE
Confidence 999999999999999 5999999999999999999887776654 3478999999999866 5899999997
Q ss_pred cCC
Q 001446 1063 DGE 1065 (1075)
Q Consensus 1063 ~g~ 1065 (1075)
+|.
T Consensus 216 ~G~ 218 (258)
T PRK13548 216 QGR 218 (258)
T ss_pred CCE
Confidence 664
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=302.05 Aligned_cols=171 Identities=25% Similarity=0.409 Sum_probs=148.3
Q ss_pred cEEEEeEEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCC--CCCccEEEeCCcC--ccccccEE
Q 001446 181 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVG--SDLNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~---~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~--~~~~G~i~~~~~~--~~~~~~i~ 253 (1075)
.++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|.+ ...++.++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 5889999999974 267999999999999999999999999999999999986 4899999999865 33456899
Q ss_pred EEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHcC
Q 001446 254 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 332 (1075)
Q Consensus 254 ~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~~ 332 (1075)
|++|++.++. .|++||+.++. .++ +||||||||++||||++.
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~----------------~~~---------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSA----------------LLR---------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred EecccCccccCCcHHHHHHHHH----------------HHh---------------------cCCHHHhHHHHHHHHHhc
Confidence 9999998776 49999997531 000 599999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhh--HhhCCeEEEEcCCC
Q 001446 333 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPAL--VAFHDVVLSLDGEG 388 (1075)
Q Consensus 333 ~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~--~~~~d~i~~l~~~g 388 (1075)
+|+++||||||++||+.+...+.+.+++ .++|+|++||+++. ...+|++++|+++|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g 186 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGG 186 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCC
Confidence 9999999999999999999999888764 48999999999973 56899999998633
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=317.04 Aligned_cols=210 Identities=18% Similarity=0.230 Sum_probs=163.6
Q ss_pred CCceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCC--C---CCCeEecCCCCCccc----
Q 001446 834 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP--V---VSGSLTKPSQHIDEE---- 904 (1075)
Q Consensus 834 ~g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~--~---~sG~I~idg~di~~~---- 904 (1075)
.|.|+++|+++.|++ .++|+|+||+|+|||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++...
T Consensus 2 ~~~l~~~nl~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 2 NNKVKLEQLNVHFGK-NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred CcEEEEEEEEEEeCC-eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 467999999999974 579999999999999999999999999999999999986 3 589999999988642
Q ss_pred cCCcCcEEEEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCC
Q 001446 905 AGSGCGIFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGW 983 (1075)
Q Consensus 905 ~~~r~~i~~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gl 983 (1075)
...|.+++|+||+|.+|. .|+++|+.++..... . . .....++.+.++++.+++...+... +
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~----------~---~--~~~~~~~~~~~~l~~~~l~~~~~~~---~ 142 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG----------R---V--NRSEADEIVESSLKRVALWDEVKDR---L 142 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC----------C---C--CHHHHHHHHHHHHHHcCCchhhhHH---h
Confidence 234667999999999998 599999975321000 0 0 0000123345566666653322110 0
Q ss_pred ccccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCch-hhccceEE
Q 001446 984 DANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELR 1060 (1075)
Q Consensus 984 dt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i-~~~~~~l~ 1060 (1075)
+ .....||+|||||++||||++++|++|||||||++||..+...+.+.+++ .+.|+|+|+|+++.+ ++.|+++.
T Consensus 143 ~---~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~ 219 (252)
T PRK14256 143 K---SNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAF 219 (252)
T ss_pred h---CCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEE
Confidence 1 12356999999999999999999999999999999999999888777654 368999999999865 78999999
Q ss_pred EEcCC
Q 001446 1061 LIDGE 1065 (1075)
Q Consensus 1061 l~~g~ 1065 (1075)
|.+|.
T Consensus 220 l~~G~ 224 (252)
T PRK14256 220 FYMGD 224 (252)
T ss_pred EECCE
Confidence 97664
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=303.90 Aligned_cols=204 Identities=23% Similarity=0.296 Sum_probs=167.1
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCC---CCccccCCcCcEEE
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQ---HIDEEAGSGCGIFY 913 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~---di~~~~~~r~~i~~ 913 (1075)
|..+|++..++. .++++|||++|+.||.+|+.||||||||||+++|.|+-.|++|+|.++|. |.+.+.....+||+
T Consensus 3 i~i~~~~~~~~~-~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGf 81 (345)
T COG1118 3 IRINNVKKRFGA-FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81 (345)
T ss_pred eeehhhhhhccc-ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeE
Confidence 566676666653 46889999999999999999999999999999999999999999999999 77776544557999
Q ss_pred EcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccC
Q 001446 914 VPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 992 (1075)
Q Consensus 914 VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~ 992 (1075)
|.|+.-||. .||.+||.|+...... .-.+......+.+.|+-++|..+-++- ..+
T Consensus 82 vFQ~YALF~HmtVa~NIAFGl~~~~~--------------~p~~~~~r~rv~elL~lvqL~~la~ry----------P~Q 137 (345)
T COG1118 82 VFQHYALFPHMTVADNIAFGLKVRKE--------------RPSEAEIRARVEELLRLVQLEGLADRY----------PAQ 137 (345)
T ss_pred EEechhhcccchHHhhhhhccccccc--------------CCChhhHHHHHHHHHHHhcccchhhcC----------chh
Confidence 999999986 7999999997631100 000112245667778888886655443 367
Q ss_pred CChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCC-chhhccceEEEEcCC
Q 001446 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls-~i~~~~~~l~l~~g~ 1065 (1075)
||||||||+|+||||..+|++|+||||-+|||....+.+++.+++ .|+|++.|+|..+ ..+..|++++|++|.
T Consensus 138 LSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~ 215 (345)
T COG1118 138 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGR 215 (345)
T ss_pred cChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCe
Confidence 999999999999999999999999999999999988777665543 5999999999995 889999999998874
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=321.68 Aligned_cols=209 Identities=23% Similarity=0.243 Sum_probs=164.6
Q ss_pred CceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCC-----CCCCeEecCCCCCccc----c
Q 001446 835 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP-----VVSGSLTKPSQHIDEE----A 905 (1075)
Q Consensus 835 g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~-----~~sG~I~idg~di~~~----~ 905 (1075)
..|+++||+++|++ +++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++... .
T Consensus 19 ~~l~~~nl~~~~~~-~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 19 IALSTKDLHVYYGK-KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred eEEEEeeEEEEECC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 36999999999964 679999999999999999999999999999999999996 4799999999988542 2
Q ss_pred CCcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcc
Q 001446 906 GSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 985 (1075)
Q Consensus 906 ~~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 985 (1075)
..|.+++||||+|.+|.+|+++|+.++.... +.. .....++.+.++++.++|...+... ++
T Consensus 98 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~----------~~~-----~~~~~~~~~~~~l~~~~l~~~i~~~---~~- 158 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFAKSIYENITFALERA----------GVK-----DKKVLDEIVETSLKQAALWDQVKDD---LH- 158 (267)
T ss_pred HHhcceEEEecCCccccccHHHHHHhHHHhc----------CCC-----CHHHHHHHHHHHHHHcCCCchhhhh---hc-
Confidence 3466799999999999999999997642100 000 0000123455666776664222110 11
Q ss_pred ccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCch-hhccceEEEE
Q 001446 986 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLI 1062 (1075)
Q Consensus 986 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i-~~~~~~l~l~ 1062 (1075)
.....||+|||||+|||||++++|++|||||||++||..+...+.+++++ .+.|+|+|+|+++.+ ++.|+++.|.
T Consensus 159 --~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~ 236 (267)
T PRK14237 159 --KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFY 236 (267)
T ss_pred --CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEE
Confidence 12357999999999999999999999999999999999999888777654 478999999999765 7899999997
Q ss_pred cCC
Q 001446 1063 DGE 1065 (1075)
Q Consensus 1063 ~g~ 1065 (1075)
+|.
T Consensus 237 ~G~ 239 (267)
T PRK14237 237 LGD 239 (267)
T ss_pred CCE
Confidence 764
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=299.76 Aligned_cols=161 Identities=27% Similarity=0.372 Sum_probs=142.7
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcCc-------cccccEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------~~~~~i~ 253 (1075)
.++++|+++.| +++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..+++++
T Consensus 4 ~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 4 VLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred EEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 58999999987 89999999999999999999999999999999999999999999998541 1356799
Q ss_pred EEcCCC---C-CCcCCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHH
Q 001446 254 YVPQRP---Y-TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 329 (1075)
Q Consensus 254 ~v~Q~~---~-~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAra 329 (1075)
|+||++ . ++..|++||+.++.. ||||||||++||||
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~a 118 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGNQQKVVLARW 118 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHH
Confidence 999985 2 344699999876310 89999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 330 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 330 l~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
++.+|+++||||||++||+.+++.+.+.+++ .++|+|++||+++.+. .||++++|++
T Consensus 119 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~ 179 (182)
T cd03215 119 LARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYE 179 (182)
T ss_pred HccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecC
Confidence 9999999999999999999999999887764 3789999999998775 5999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=321.44 Aligned_cols=204 Identities=22% Similarity=0.270 Sum_probs=163.8
Q ss_pred ceEEeeeeeeCCCc-cccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEE
Q 001446 836 SISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIF 912 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~-~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~ 912 (1075)
.|+++|+++.|++. +++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.++|.++...+ ..|.+++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 48999999999764 56999999999999999999999999999999999999999999999999887542 3456799
Q ss_pred EEcCCCC--CCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccc
Q 001446 913 YVPQRPY--TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWE 990 (1075)
Q Consensus 913 ~VpQdP~--Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g 990 (1075)
||||+|. ++..|+++|+.++.... +. .....++.+.++++.+++.+.... ..
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~----------~~------~~~~~~~~~~~~l~~~~l~~~~~~----------~~ 140 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENH----------AV------PYDEMHRRVSEALKQVDMLERADY----------EP 140 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhc----------CC------CHHHHHHHHHHHHHHcCCchhhhC----------Cc
Confidence 9999994 44568999997642100 00 000012345566777776443322 13
Q ss_pred cCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCchhhccceEEEEcCC
Q 001446 991 DILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 991 ~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~i~~~~~~l~l~~g~ 1065 (1075)
..||+|||||++||||++++|++|||||||++||..+...+.+.+++ .++|+|+|+|+++.+...|+++.|.+|.
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~ 219 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGT 219 (269)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCE
Confidence 56999999999999999999999999999999999999888776643 3789999999998887899999997664
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=302.62 Aligned_cols=169 Identities=31% Similarity=0.452 Sum_probs=148.2
Q ss_pred cEEEEeEEEEcCC-----CCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCC--CCCccEEEeCCcCc---cccc
Q 001446 181 YIEFSGVKVVTPT-----GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVGS---DLNK 250 (1075)
Q Consensus 181 ~i~~~~v~~~~~~-----~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~--~~~~G~i~~~~~~~---~~~~ 250 (1075)
.++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.+. ..++
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 4899999999975 367999999999999999999999999999999999999 99999999998652 3467
Q ss_pred cEEEEcCCCCCCc-CCHHHHhcCCCCCCcccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHH
Q 001446 251 EIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 329 (1075)
Q Consensus 251 ~i~~v~Q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAra 329 (1075)
.++|+||++.++. .|++||+.++.. + ..||||||||++||||
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~----------------~---------------------~~LS~G~~qrv~lara 125 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAK----------------L---------------------RGLSGGERKRVSIALE 125 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHH----------------h---------------------ccCCHHHHHHHHHHHH
Confidence 8999999998776 599999865310 0 0599999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCCeEEEEecChh-hH-hhCCeEEEEcC
Q 001446 330 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPA-LV-AFHDVVLSLDG 386 (1075)
Q Consensus 330 l~~~p~illLDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~-~~-~~~d~i~~l~~ 386 (1075)
|+.+|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++ .+ ..+|++++|++
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~ 187 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ 187 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC
Confidence 9999999999999999999999999887764 4889999999986 44 57999999986
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=318.27 Aligned_cols=208 Identities=20% Similarity=0.223 Sum_probs=162.1
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCC-----CCCCeEecCCCCCccc----cC
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP-----VVSGSLTKPSQHIDEE----AG 906 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~-----~~sG~I~idg~di~~~----~~ 906 (1075)
.|+++||+++|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++ |.+|+|.+||.++... ..
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYGN-YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEECC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 4899999999975 579999999999999999999999999999999999997 4799999999987532 23
Q ss_pred CcCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccc
Q 001446 907 SGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDAN 986 (1075)
Q Consensus 907 ~r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~ 986 (1075)
.|..++|+||+|.+|++|+++|+.++.... +.. .....+..+.++++.++++.... ..++.
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~----------~~~-----~~~~~~~~~~~~l~~~~l~~~~~---~~~~~- 143 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIA----------GVK-----DKELIDQRVEESLKQAAIWKETK---DNLDR- 143 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHc----------CCC-----CHHHHHHHHHHHHHHcCCCcchH---HHhcc-
Confidence 456799999999999999999997542100 000 00001233445566666532110 11121
Q ss_pred cccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCc-hhhccceEEEEc
Q 001446 987 LNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPAL-IPFHSLELRLID 1063 (1075)
Q Consensus 987 ~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~-i~~~~~~l~l~~ 1063 (1075)
....||||||||++||||++++|+++||||||++||.++...+.+.+++ .+.|+|+|+|+++. .++.|+++.|.+
T Consensus 144 --~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~ 221 (251)
T PRK14251 144 --NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMN 221 (251)
T ss_pred --ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEEC
Confidence 2357999999999999999999999999999999999999888777654 37899999999986 567999999976
Q ss_pred CC
Q 001446 1064 GE 1065 (1075)
Q Consensus 1064 g~ 1065 (1075)
|.
T Consensus 222 G~ 223 (251)
T PRK14251 222 GD 223 (251)
T ss_pred CE
Confidence 65
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=318.72 Aligned_cols=209 Identities=22% Similarity=0.227 Sum_probs=162.3
Q ss_pred ceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCC-----CCCeEecCCCCCc--cc--cC
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPV-----VSGSLTKPSQHID--EE--AG 906 (1075)
Q Consensus 836 ~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~-----~sG~I~idg~di~--~~--~~ 906 (1075)
.|+++||+++|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++| .+|+|.+||.++. .. ..
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYGS-NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeCC-eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 4899999999975 5699999999999999999999999999999999999987 4999999999886 22 23
Q ss_pred CcCcEEEEcCCCCCCCc-chhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcc
Q 001446 907 SGCGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 985 (1075)
Q Consensus 907 ~r~~i~~VpQdP~Lf~g-Tir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt 985 (1075)
.|.+++|+||+|.+|++ |+++|+.++..... .. ......+..+.++++.+++...+.. .++.
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~----------~~----~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~ 145 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG----------LV----KSKKELDERVEWALKKAALWDEVKD---RLND 145 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcC----------cc----CCHHHHHHHHHHHHHHcCCccchhh---hhcc
Confidence 45679999999999976 99999975311000 00 0000012334556666665322110 0111
Q ss_pred ccccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCc-hhhccceEEEE
Q 001446 986 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPAL-IPFHSLELRLI 1062 (1075)
Q Consensus 986 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~-i~~~~~~l~l~ 1062 (1075)
....||||||||++||||++++|++|||||||++||.++...+.+.+++ .++|+|+|+|+++. ..+.|+++.|.
T Consensus 146 ---~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 222 (253)
T PRK14267 146 ---YPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLY 222 (253)
T ss_pred ---ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEE
Confidence 2356999999999999999999999999999999999999888777654 36899999999986 46899999998
Q ss_pred cCC
Q 001446 1063 DGE 1065 (1075)
Q Consensus 1063 ~g~ 1065 (1075)
+|.
T Consensus 223 ~G~ 225 (253)
T PRK14267 223 LGK 225 (253)
T ss_pred CCE
Confidence 775
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=306.28 Aligned_cols=191 Identities=20% Similarity=0.276 Sum_probs=155.7
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccc-cCCcCcEEEEc
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFYVP 915 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~-~~~r~~i~~Vp 915 (1075)
|+++||++.|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...|.+++|+|
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 2 LDVIELDFDYHD-QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEEEeCC-eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 679999999975 5699999999999999999999999999999999999999999999999988643 23456799999
Q ss_pred CCCCCC-CcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCccccccccCCC
Q 001446 916 QRPYTC-LGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 994 (1075)
Q Consensus 916 QdP~Lf-~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~~LS 994 (1075)
|+|.++ ..|+++|+.++..... .+..+.++++.+++.+..+. . ...||
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~~---------------------~~~~~~~~l~~~~l~~~~~~-------~---~~~LS 129 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFSP---------------------GAVGITELCRLFSLEHLIDY-------P---CGLLS 129 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcCc---------------------chHHHHHHHHHcCCchhhhC-------C---hhhcC
Confidence 999987 5799999975321000 01234556666665332211 1 23599
Q ss_pred hhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh---cCceEEEecCCCCchhhccceE
Q 001446 995 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIPFHSLEL 1059 (1075)
Q Consensus 995 gGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~---~~~TvI~IaHRls~i~~~~~~l 1059 (1075)
+|||||++||||++++|++|||||||++||..+...+.+.+++ .++|+|+|+|+...++-.|+..
T Consensus 130 ~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 130 SGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 9999999999999999999999999999999999888777653 4899999999998887777654
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=318.24 Aligned_cols=208 Identities=21% Similarity=0.211 Sum_probs=162.5
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCC-----CCCCeEecCCCCCcccc----CC
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP-----VVSGSLTKPSQHIDEEA----GS 907 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~-----~~sG~I~idg~di~~~~----~~ 907 (1075)
-+++||++.|++ +++|+|+||+|+|||.++|+|+||||||||+++|.|+++ |.+|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWYGS-KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEECC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 368999999863 579999999999999999999999999999999999986 46999999999886542 24
Q ss_pred cCcEEEEcCCCCCCCcchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccc
Q 001446 908 GCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 987 (1075)
Q Consensus 908 r~~i~~VpQdP~Lf~gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~ 987 (1075)
|.+++||||+|.+|++|+++|+.++....+ ... .....+..+.++++.+++...+... ++
T Consensus 85 ~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~----------~~~----~~~~~~~~~~~~l~~~~l~~~~~~~---~~--- 144 (251)
T PRK14244 85 RAKVGMVFQKPNPFPKSIYDNVAYGPKLHG----------LAK----NKKKLDEIVEKSLTSVGLWEELGDR---LK--- 144 (251)
T ss_pred hhhEEEEecCcccccCCHHHHHHHHHHhcC----------CCC----CHHHHHHHHHHHHHHcCCCchhhhH---hh---
Confidence 667999999999999999999975310000 000 0001123455667777764311100 01
Q ss_pred ccccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh--cCceEEEecCCCCch-hhccceEEEEcC
Q 001446 988 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALI-PFHSLELRLIDG 1064 (1075)
Q Consensus 988 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~--~~~TvI~IaHRls~i-~~~~~~l~l~~g 1064 (1075)
.....||||||||++||||++++|+||||||||++||..+...+.+.+++ .++|+|+|+|++..+ ++.|+++.|.+|
T Consensus 145 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G 224 (251)
T PRK14244 145 DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSG 224 (251)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECC
Confidence 12356999999999999999999999999999999999999888877654 479999999999875 579999999776
Q ss_pred C
Q 001446 1065 E 1065 (1075)
Q Consensus 1065 ~ 1065 (1075)
.
T Consensus 225 ~ 225 (251)
T PRK14244 225 R 225 (251)
T ss_pred E
Confidence 5
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=319.03 Aligned_cols=208 Identities=21% Similarity=0.223 Sum_probs=166.0
Q ss_pred CceEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCcccc--CCcCcEE
Q 001446 835 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIF 912 (1075)
Q Consensus 835 g~I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~--~~r~~i~ 912 (1075)
-.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|.+|+|.++|.++...+ ..+.+++
T Consensus 6 ~~l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 6 ARLRGEQLTLGYGK-YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred cEEEEEEEEEEECC-EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 46999999999975 56999999999999999999999999999999999999999999999999887642 2345799
Q ss_pred EEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccccccc
Q 001446 913 YVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 991 (1075)
Q Consensus 913 ~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~g~ 991 (1075)
|+||+|.+|. .|+++|+.++...... ......+..+..+.++++.++|.+...+. ..
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~ 142 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQP------------LFTRWRKEDEEAVTKAMQATGITHLADQS----------VD 142 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccc------------cccCCCHHHHHHHHHHHHHcCCHHHhcCC----------cc
Confidence 9999999875 6999999754211000 00000001133456777777775443222 35
Q ss_pred CCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCC-chhhccceEEEEcCC
Q 001446 992 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 992 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls-~i~~~~~~l~l~~g~ 1065 (1075)
.||||||||++||||++++|++|||||||++||.++...+.+.+++ .++|+|+++|++. ..++.|+++.|.+|.
T Consensus 143 ~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 221 (265)
T PRK10253 143 TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGK 221 (265)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999887776643 3889999999997 568999999997664
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=313.95 Aligned_cols=201 Identities=23% Similarity=0.255 Sum_probs=162.7
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCC-----CCccEEEeCCcCc--------c
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS--------D 247 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~-----~~~G~i~~~~~~~--------~ 247 (1075)
.++++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+. .
T Consensus 3 ~l~~~~v~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFD-DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 478999999986 4679999999999999999999999999999999999864 4899999999641 2
Q ss_pred ccccEEEEcCCCCCCcCCHHHHhcCCCCCCccc-CcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHH
Q 001446 248 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 326 (1075)
Q Consensus 248 ~~~~i~~v~Q~~~~~~~tv~~ni~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~l 326 (1075)
.+++++|+||+|.++..|++||+.++....... .....+++.++++.+++.+.+.... ......||||||||++|
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~----~~~~~~LS~Gq~qrv~l 157 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKL----DKSALGLSGGQQQRLCI 157 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHH----hCCcccCCHHHHHHHHH
Confidence 356799999999988889999998753211110 1112345677888888854322110 01136899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 327 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 327 Aral~~~p~illLDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
||||+++|+++||||||++||+.+...+.+.+++ .+.|+|++||+++.+. .+|+++++++
T Consensus 158 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~ 220 (250)
T PRK14266 158 ARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLN 220 (250)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEEC
Confidence 9999999999999999999999999999888764 3789999999998775 6899999975
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=286.60 Aligned_cols=197 Identities=24% Similarity=0.364 Sum_probs=173.7
Q ss_pred cEEEEeEEEEcCCCCeeeeeceEEEeCCCEEEEEcCCcchHHHHHHHHhCCCCCCccEEEeCCcC------ccccccEEE
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 254 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~i~l~i~~g~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~ 254 (1075)
+++++||++.|. ++.+++++|++|++|.+++|+||||+||||||.+++++.++++|+|.++|.+ .++.++++.
T Consensus 1 MI~i~nv~K~y~-~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 1 MITIENVSKSYG-TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred CeeehhhhHhhC-CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 478899999984 6789999999999999999999999999999999999999999999999975 356778999
Q ss_pred EcCCCCCCc-CCHHHHhcCCCCCCc--ccCcCCHHHHHHHHHHcCChhHHhcCCCCcccCCCCCCChhHHHHHHHHHHHc
Q 001446 255 VPQRPYTAV-GTLRDQLIYPLTSDQ--EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 331 (1075)
Q Consensus 255 v~Q~~~~~~-~tv~~ni~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRl~lAral~ 331 (1075)
+-|+..+.. -||+|-+.||..... .....++..+.++++.++|.++.+++- .+||||||||.-+|..++
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryL--------d~LSGGQrQRAfIAMVla 151 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL--------DELSGGQRQRAFIAMVLA 151 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhH--------Hhcccchhhhhhhheeee
Confidence 999887654 599999999865432 223445667889999999999999875 589999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCCeEEEEecChhhHh-hCCeEEEEcC
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 332 ~~p~illLDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
.+.+.++||||.++||......+++.+++ .|+|+|+|-||.++.+ ++|+|+.|.+
T Consensus 152 QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~ 211 (252)
T COG4604 152 QDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKN 211 (252)
T ss_pred ccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecC
Confidence 99999999999999999999888887763 5999999999999985 7999999986
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=331.14 Aligned_cols=202 Identities=21% Similarity=0.176 Sum_probs=159.8
Q ss_pred eEEeeeeeeCCCccccccccceeecCCCeEEEEcCCCCcHHHHHHHHhCCCCCCCCeEecCCCCCccccC------CcCc
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG------SGCG 910 (1075)
Q Consensus 837 I~f~~V~~~yp~~~~vL~~vs~~I~~Ge~vaIvG~SGsGKSTL~~lL~Rl~~~~sG~I~idg~di~~~~~------~r~~ 910 (1075)
+++++|.-.|. ..++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+. .|.+
T Consensus 29 ~~~~~~~~~~~-~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~ 107 (400)
T PRK10070 29 LSKEQILEKTG-LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107 (400)
T ss_pred ccHHHHHhhcC-CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCC
Confidence 44555544442 3358999999999999999999999999999999999999999999999999876521 2457
Q ss_pred EEEEcCCCCCCC-cchhhhhcCCCChHHHHHHHhhhcCCCcccccccccchHHHHHHHHhCCchhhhhhhccCCcccccc
Q 001446 911 IFYVPQRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 989 (1075)
Q Consensus 911 i~~VpQdP~Lf~-gTir~NL~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~L~~~i~~~~~Gldt~~~~ 989 (1075)
++||||+|.+|+ .|+++|+.++... .+.. ....++.+.++++.++|.+...+.
T Consensus 108 igyv~Q~~~l~~~~Tv~enl~~~~~~----------~~~~------~~~~~~~~~e~L~~~gL~~~~~~~---------- 161 (400)
T PRK10070 108 IAMVFQSFALMPHMTVLDNTAFGMEL----------AGIN------AEERREKALDALRQVGLENYAHSY---------- 161 (400)
T ss_pred EEEEECCCcCCCCCCHHHHHHHHHHh----------cCCC------HHHHHHHHHHHHHHcCCChhhhcC----------
Confidence 999999999997 4999999864210 0000 000123456677888875544333
Q ss_pred ccCCChhHHHHHHHHHHhhcCCCEeEeeccCCCCCHHHHHHHHHHHHh----cCceEEEecCCCCc-hhhccceEEEEcC
Q 001446 990 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPAL-IPFHSLELRLIDG 1064 (1075)
Q Consensus 990 g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSalD~~~e~~i~~~~~~----~~~TvI~IaHRls~-i~~~~~~l~l~~g 1064 (1075)
...||||||||++|||||+++|+|||||||||+||+.+...+++.+.+ .++|+|+|+|+++. .++.|+++.|.+|
T Consensus 162 ~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G 241 (400)
T PRK10070 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNG 241 (400)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 246999999999999999999999999999999999999888776642 48999999999975 5789999999776
Q ss_pred C
Q 001446 1065 E 1065 (1075)
Q Consensus 1065 ~ 1065 (1075)
.
T Consensus 242 ~ 242 (400)
T PRK10070 242 E 242 (400)
T ss_pred E
Confidence 4
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1075 | ||||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-14 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-13 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 7e-06 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-13 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-05 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-13 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-05 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-12 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 8e-09 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 6e-12 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-07 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-10 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 7e-06 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-10 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-10 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 7e-10 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 8e-10 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 9e-10 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-09 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-09 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-09 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-09 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-06 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-09 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 4e-09 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-09 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-09 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 5e-09 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-09 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-07 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 8e-09 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 9e-09 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-04 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 9e-09 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-08 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-08 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 8e-04 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-08 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-04 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-08 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-04 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 3e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-08 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 4e-08 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 4e-06 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-07 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 5e-05 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-07 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-07 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-04 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 4e-07 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 4e-07 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 4e-07 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-07 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 7e-07 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 9e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-06 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-04 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 3e-06 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-06 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 6e-06 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 1e-05 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-05 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-05 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-05 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-05 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-05 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-05 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 3e-05 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 7e-05 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 8e-05 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 8e-05 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 8e-05 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-05 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-04 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-04 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 7e-04 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 9e-04 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 9e-04 |
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1075 | |||
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-24 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 4e-12 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 7e-05 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-19 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-13 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-10 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 5e-08 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 8e-19 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-15 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-09 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-05 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-18 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-09 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-17 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 5e-08 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-17 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-15 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-08 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-07 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-17 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-15 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-08 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-08 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-17 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-09 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 6e-15 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 5e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-07 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 3e-14 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 6e-09 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-14 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-06 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 3e-14 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 4e-06 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 5e-13 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 5e-06 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 6e-13 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-12 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-06 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 3e-11 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 7e-08 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 3e-11 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 6e-06 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 7e-11 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 4e-06 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 8e-11 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-07 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-10 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 3e-05 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-10 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 5e-05 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-10 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-06 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 3e-10 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-04 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 4e-10 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 7e-10 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 9e-10 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 3e-09 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 5e-09 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 5e-09 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 6e-09 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 4e-04 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 2e-08 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 4e-04 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 3e-08 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 3e-08 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 5e-04 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 3e-08 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 6e-08 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 6e-08 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 8e-08 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-04 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 6e-07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-04 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-04 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 9e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 3e-04 |
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-24
Identities = 184/975 (18%), Positives = 355/975 (36%), Gaps = 182/975 (18%)
Query: 123 IISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYI 182
++ S+G S + G A + + +I + SI+ S +G + + N +
Sbjct: 334 VLIGAFSVGQASPNIEAFANARGAAYEVFK--IIDNKPSIDSFSK--SGHKPDNIQGN-L 388
Query: 183 EFSGVKVVTPT-GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
EF + P+ V + + L LKV+ G + + G +G GKS+ +++ L+ + G ++
Sbjct: 389 EFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448
Query: 241 KPGVG-SDLN-----KEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELL 292
G +N + I V Q P T+ + + Y + E+E + +
Sbjct: 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIE--------KAV 500
Query: 293 KNVDLEYLLDRYPP-------EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
K + + + P E+ G +LS G++QR+ +AR PK +LDE TSA
Sbjct: 501 KEANAYDFIMKLPHQFDTLVGER----GAQLSGGQKQRIAIARALVRNPKILLLDEATSA 556
Query: 346 VTTDMEER-FCAKVRAM-GTSCITISHRPALVAFHDVVLSLDGEGEWRV-----HD---K 395
+ T+ E A +A G + I I+HR + V DV+ D G + HD +
Sbjct: 557 LDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFD-GG--VIVEQGNHDELMR 613
Query: 396 RDG--SSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAAS 453
G +V + ++ +++K + + + S
Sbjct: 614 EKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHD 673
Query: 454 PIADHNVPLPVFPQLKSAP--RILPLRVADMFKVLVPTVFDK-QGAQLLAVAFLVVSRTW 510
+ + + A RIL L + +V G A + +
Sbjct: 674 QDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVI------ 727
Query: 511 ISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRH-LTARLALGWRIR 569
S + Q+ ++ L+ + + SFI ++ + R
Sbjct: 728 FSKVVGVFTNGGPPETQRQN-SNLFSLLFLIL---GIISFITFFLQGFTFGKAGEILTKR 783
Query: 570 MTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKL-----------TTDLSGLVT 617
+ + KS LR++ S++ ++ ++ R+ +D ++ +++ L T
Sbjct: 784 LRYMVFKSMLRQDVSWFDDPKNTTGALTT--RLANDAAQVKGATGSRLAVIFQNIANLGT 841
Query: 618 GMVKPSVDI-LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGT 676
G++ I L + W++ L + + ++ G + G +++LEG+
Sbjct: 842 GII-----ISLIYGWQL-TL-----LLLAIVPIIAIAGVVEMKM-LSGQALKDKKELEGS 889
Query: 677 FRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQL 736
+ E + +V RE+ + L +KK +FGI F Q
Sbjct: 890 GKIATEAIENF-RTVVSLT---REQKFETMYAQSLQIPYRNAMKKAHVFGIT--FSFTQA 943
Query: 737 PHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLA-SVVSQSFLAFGDILELHRKFVE 795
++ + + LV+ Q + L S + +A G + + +
Sbjct: 944 MMYFSYAAAFRFGAY------LVT-QQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAK 996
Query: 796 LSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS---QKLL 852
+ + I + E EI S + ++ FS + P+ +L
Sbjct: 997 ATVSASHIIRIIEK-------TPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVL 1049
Query: 853 ARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIF 912
+ L+ E+ G++L + G +G GKS+V ++L + ++GS+ +D G I
Sbjct: 1050 -QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF-----LD-----GKEIK 1098
Query: 913 ------------YVPQRPYTCLGTLRDQIIY-----PLSREEAELRALKLHGKGEKLVDT 955
V Q P ++ + I Y +S EE RA K
Sbjct: 1099 QLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIV-RAAKE---------- 1147
Query: 956 TNILD--SYLK----TIL--EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLF 1007
NI L T + +G +LS G G++QR+ +AR
Sbjct: 1148 ANIHQFIDSLPDKYNTRVGDKGTQLS--------G-------------GQKQRIAIARAL 1186
Query: 1008 FHKPKFGILDECTNA 1022
+P +LDE T+A
Sbjct: 1187 VRQPHILLLDEATSA 1201
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 4e-12
Identities = 76/358 (21%), Positives = 146/358 (40%), Gaps = 70/358 (19%)
Query: 47 ESHIQQKF-KALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTS 105
E + + ++L R + FG+ F + + A F G
Sbjct: 909 EQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAA-----FRFG------- 956
Query: 106 TLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHE--------LMVIS 157
A +++ ++ + + + ++S +A + + +I
Sbjct: 957 ----AYLVTQQLMTFE---NVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIE 1009
Query: 158 RELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLV-ENLTLKVEPGSNLLITG 215
+ I+ S G + E N ++FSGV PT ++ V + L+L+V+ G L + G
Sbjct: 1010 KTPEIDSYST--QGLKPNMLEGN-VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVG 1066
Query: 216 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLN-----KEIFYVPQRPYTAVGTLRDQ 269
+G GKS++ ++L + ++G + G LN ++ V Q P ++ +
Sbjct: 1067 SSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAEN 1126
Query: 270 LIY----PLTSDQEVEPLTHGGMVELLKNVDL----EYLLDRYPPEKEI-NWGDELSLGE 320
+ Y + S +E+ K ++ + L D+Y + + G +LS G+
Sbjct: 1127 IAYGDNSRVVSYEEIV--------RAAKEANIHQFIDSLPDKY--NTRVGDKGTQLSGGQ 1176
Query: 321 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV------RAM-GTSCITISHR 371
+QR+ +AR +P +LDE TSA+ T+ E KV +A G +CI I+HR
Sbjct: 1177 KQRIAIARALVRQPHILLLDEATSALDTESE-----KVVQEALDKAREGRTCIVIAHR 1229
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 7e-05
Identities = 106/534 (19%), Positives = 193/534 (36%), Gaps = 133/534 (24%)
Query: 538 IGVSVLQSAASSFIAPSIRHLTA-RLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSI 595
IG VL ++I S L A R +IR Q + + + ++
Sbjct: 117 IGAGVL---IVAYIQVSFWCLAAGRQIH--KIR--QKFFHAIMNQEIGWFD----VHDVG 165
Query: 596 DADQRITHDLEK---------------LTTDLSGLVTGMVKPSVDILWFTWRMKALTGQR 640
+ + R+T D+ K + T G + G W++ +
Sbjct: 166 ELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIG--------FTRGWKLTLVI--- 214
Query: 641 GVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAE-------SVAF 693
+AI L + + ++ T +E + + A AE +V
Sbjct: 215 -LAISPVLGLSAGIWAKILSS----FTDKELH-------AYAKAGAVAEEVLAAIRTVIA 262
Query: 694 FGGGAREKAMIESRFRELLEHSLLL-LKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEH 752
FGG +E R+ LE + L +KK I L ++ L+ Y
Sbjct: 263 FGGQKKE----LERYNNNLEEAKRLGIKKAITANISMGAA--FLLIYASYALAFWY---- 312
Query: 753 KGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDA 812
G ++S + + L SV+ +F + G F G +F++ +D
Sbjct: 313 -GTSLVISKEYSIGQVLTVFFSVLIGAF-SVGQASPNIEAFANARGAAYEVFKI---IDN 367
Query: 813 AQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPS---QKLLARQLTFEIVPGKSLLVT 869
+P I S+ + Q ++ F + PS ++L + L ++ G+++ +
Sbjct: 368 -KP---SIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQIL-KGLNLKVKSGQTVALV 422
Query: 870 GPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE-------EAGSGCGIFYVPQRPYTCL 922
G +G GKS+ ++++ L+ + G ++ Q I E I V Q P
Sbjct: 423 GNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI-----IGVVSQEPVLFA 477
Query: 923 GTLRDQIIY---PLSREEAELRALKL---HGKGEKLVD--TTNILDSYLKTILEGVRLSY 974
T+ + I Y ++ +E E +A+K + KL T + + G +LS
Sbjct: 478 TTIAENIRYGREDVTMDEIE-KAVKEANAYDFIMKLPHQFDTLVGER-------GAQLS- 528
Query: 975 LLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVE 1028
G G++QR+ +AR PK +LDE T+A +D E
Sbjct: 529 -------G-------------GQKQRIAIARALVRNPKILLLDEATSA--LDTE 560
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 3e-19
Identities = 63/319 (19%), Positives = 107/319 (33%), Gaps = 75/319 (23%)
Query: 110 AKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHEL-MVISRELSIEDKSPQ 168
AK + L + VI+ L L D IH + S +
Sbjct: 178 AKAIRELLKNKYVIVV-----------DHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAA 226
Query: 169 RNGSRNY----------------------------FSEANYIEFSGVKVVTPTGNVLVEN 200
R G N+ S+ + K++ G+ +
Sbjct: 227 RVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVV 286
Query: 201 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR-- 258
+ + G + I GPNG GK++ R+L G G + + + Y PQR
Sbjct: 287 DNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------QILSYKPQRIF 340
Query: 259 --PYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE 315
V L + L++ E+ K ++L LL+ ++
Sbjct: 341 PNYDGTVQQYLENASKDALSTSSWF-------FEEVTKRLNLHRLLESNV--------ND 385
Query: 316 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF-CAKV-----RAMGTSCITIS 369
LS GE Q+L +A + +LD+ +S + D+EER+ AK R I
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYL--DVEERYIVAKAIKRVTRERKAVTFIID 443
Query: 370 HRPALVAFH-DVVLSLDGE 387
H ++ + D ++ GE
Sbjct: 444 HDLSIHDYIADRIIVFKGE 462
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 3e-13
Identities = 36/204 (17%), Positives = 80/204 (39%), Gaps = 33/204 (16%)
Query: 205 VEPGSNLLITGPNGSGKSSLFRVL-GGLWPLVSGHIAKPGVGSDLNK----EIFYVPQRP 259
+ + L + G NG GK+++ ++L G + P +K G L + EI+ +
Sbjct: 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81
Query: 260 YTAVGTLRDQLIYPLTSDQEVEPLTHGGM---------VELLKNVDLEYLLDRYPPEKEI 310
Y+ + ++ Y + + ++ + + E+ + +++ L ++
Sbjct: 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDA----- 136
Query: 311 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM------GTS 364
+ LS G QRL +A + I D+ +S + D+ ER +
Sbjct: 137 ---NILSGGGLQRLLVAASLLREADVYIFDQPSSYL--DVRER--MNMAKAIRELLKNKY 189
Query: 365 CITISHRPALVA-FHDVVLSLDGE 387
I + H ++ D++ + GE
Sbjct: 190 VIVVDHDLIVLDYLTDLIHIIYGE 213
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 1e-10
Identities = 49/280 (17%), Positives = 95/280 (33%), Gaps = 65/280 (23%)
Query: 775 VVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQ 834
VS+S+ A I + ++ R E++ +L D ++ KW
Sbjct: 219 RVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIK- 277
Query: 835 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL 894
+ +L + E G+ + + GPNG GK++ R+L G GS+
Sbjct: 278 -KLGDFQLVVDN-----------GEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSV 325
Query: 895 TKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVD 954
T Q + + + Q I+P + D
Sbjct: 326 TPEKQIL----------------------SYKPQRIFPNYDGTVQQYL------ENASKD 357
Query: 955 TTNILDSYLKTILEGVRLSYLLERE--EVGWDANLNWEDILSLGEQQRLGMARLFFHKPK 1012
+ + + + + + L LLE + LS GE Q+L +A +
Sbjct: 358 ALSTSSWFFEEVTKRLNLHRLLESNVND------------LSGGELQKLYIAATLAKEAD 405
Query: 1013 FGILDECTNATSVDVEEQ------LYRLAKDMGIT--FVT 1044
+LD+ ++ +DVEE+ + R+ ++ +
Sbjct: 406 LYVLDQPSSY--LDVEERYIVAKAIKRVTRERKAVTFIID 443
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 5e-08
Identities = 37/192 (19%), Positives = 69/192 (35%), Gaps = 30/192 (15%)
Query: 862 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT-KPSQHIDEEAGSGCGIFYVPQRPYT 920
L V G NG GK++V ++L G G K + + G I+ + Y+
Sbjct: 24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYS 83
Query: 921 CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREE 980
+ +I + E + L G +++ + + E + ++ L +
Sbjct: 84 NELKIVHKI------QYVEYASKFLKGTVNEILTKIDERG-KKDEVKELLNMTNLWNK-- 134
Query: 981 VGWDANLNWEDI--LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ------LY 1032
D LS G QRL +A + I D+ ++ +DV E+ +
Sbjct: 135 ----------DANILSGGGLQRLLVAASLLREADVYIFDQPSSY--LDVRERMNMAKAIR 182
Query: 1033 RLAKDMGITFVT 1044
L K+ + V
Sbjct: 183 ELLKNKYVIVVD 194
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 8e-19
Identities = 38/246 (15%), Positives = 87/246 (35%), Gaps = 29/246 (11%)
Query: 150 IHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGS 209
I + R +++ + S + + +K G+ ++ +
Sbjct: 322 IPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSE 379
Query: 210 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQ 269
L++ G NG+GK++L ++L G G S ++I + +
Sbjct: 380 ILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQL--FFKK 437
Query: 270 LIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 329
+ + Q +++K + ++ ++D+ LS GE QR+ +
Sbjct: 438 IRGQFLNPQFQT--------DVVKPLRIDDIIDQEV--------QHLSGGELQRVAIVLA 481
Query: 330 FYHKPKFAILDECTSAVTTDMEERF-CAKV-----RAMGTSCITISHRPALVAFH-DVVL 382
++DE ++ + D E+R C+KV + + H + + D V+
Sbjct: 482 LGIPADIYLIDEPSAYL--DSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVI 539
Query: 383 SLDGEG 388
+G
Sbjct: 540 VFEGIP 545
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 5e-15
Identities = 43/220 (19%), Positives = 72/220 (32%), Gaps = 37/220 (16%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV--------- 244
N + PG L + G NG GKS+ ++L G G P
Sbjct: 89 ANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFR 148
Query: 245 GSDL-NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV------------EL 291
GS+L N + + I P V+ G ++
Sbjct: 149 GSELQNYFTKMLEDDIKAIIKPQYVDNI-PRAIKGPVQ--KVGELLKLRMEKSPEDVKRY 205
Query: 292 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--VTTD 349
+K + LE +L R ++LS GE QR + + + DE +S V
Sbjct: 206 IKILQLENVLKRDI--------EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQR 257
Query: 350 ME-ERFCAKVRAMGTSCITISHRPALVAFH-DVVLSLDGE 387
+ + + A I + H +++ + D V + G
Sbjct: 258 LNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGV 297
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 5e-09
Identities = 32/199 (16%), Positives = 66/199 (33%), Gaps = 58/199 (29%)
Query: 858 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQR 917
E + L++ G NG+GK+++ ++L G G + PQ+
Sbjct: 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLN-----------VSMKPQK 421
Query: 918 PYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKT-ILEGVRLSYL 975
GT+R + + L+ +T +++ +R+ +
Sbjct: 422 IAPKFPGTVRQLFFKKIRGQ---------------------FLNPQFQTDVVKPLRIDDI 460
Query: 976 LERE--EVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ--- 1030
+++E LS GE QR+ + ++DE + +D E++
Sbjct: 461 IDQEVQH------------LSGGELQRVAIVLALGIPADIYLIDEPSAY--LDSEQRIIC 506
Query: 1031 ---LYRLAKDMGIT--FVT 1044
+ R T V
Sbjct: 507 SKVIRRFILHNKKTAFIVE 525
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 33/194 (17%), Positives = 60/194 (30%), Gaps = 53/194 (27%)
Query: 858 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKP---------------SQHID 902
PG+ L + G NG GKS+ ++L G G P +
Sbjct: 98 PTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFT 157
Query: 903 EEAGSGCGIFYVPQR----PYTCLGTLRDQI-IYPLSREEAELRALKLHGKGEKLVDTTN 957
+ PQ P G ++ + L E++ + K++ N
Sbjct: 158 KMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRY----IKILQLEN 213
Query: 958 ILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILD 1017
+L ++ LS GE QR + + + D
Sbjct: 214 VLKRDIEK---------------------------LSGGELQRFAIGMSCVQEADVYMFD 246
Query: 1018 ECTNATSVDVEEQL 1031
E + + +DV+++L
Sbjct: 247 EPS--SYLDVKQRL 258
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 3e-18
Identities = 48/200 (24%), Positives = 76/200 (38%), Gaps = 29/200 (14%)
Query: 182 IEFSGVKVV---TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 238
I+ V + +EN+ L+V G ++I GPNGSGK++L R + GL P SG+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP-YSGN 59
Query: 239 IAKPGVG-SDLNKEIFYVPQRP--YTAVGTLRDQLIYPL----TSDQEVEPLTHGGMVEL 291
I G+ + I Y P Y T+ D + E+
Sbjct: 60 IFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFL--------EM 111
Query: 292 LKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 350
LK + L E +L R +LS G+ + + +P+ LDE V
Sbjct: 112 LKALKLGEEILRRKL--------YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 351 EERFCAKVRAMGTSCITISH 370
++ G I ++H
Sbjct: 164 RHVISRYIKEYGKEGILVTH 183
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 39/208 (18%), Positives = 66/208 (31%), Gaps = 50/208 (24%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCG 910
+ E+ G+ +++ GPNGSGK+++ R + GL P SG++ + I
Sbjct: 22 ENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLPY-SGNIFINGMEVRKIRNYIR---Y 76
Query: 911 IFYVPQRPYTCLGTLRDQIIYPL-----SREEAELRALKLHGKGEKLVDTTNILDSYLKT 965
+P+ Y T+ D + R+ LK GE++ L L
Sbjct: 77 STNLPEA-YEIGVTVNDIVYLYEELKGLDRDLFL-EMLKALKLGEEI------LRRKLYK 128
Query: 966 ILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSV 1025
LS G+ + + +P+ LDE
Sbjct: 129 ---------------------------LSAGQSVLVRTSLALASQPEIVGLDEPFENVDA 161
Query: 1026 DVEEQLYRLAKDMGIT--FVTSSQRPAL 1051
+ R K+ G VT
Sbjct: 162 ARRHVISRYIKEYGKEGILVTHELDMLN 189
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 1e-17
Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 31/228 (13%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA- 240
I+ + + G +++ ++ ++ G ++ G NG+GK++L +L P SG +
Sbjct: 22 IQLDQIGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80
Query: 241 ---KPGVGS----DLNKEIFYVPQR---PYTAVGTLRD----QLIYPLTSDQEVEPLTHG 286
PG + + I +V + + D + Q+++
Sbjct: 81 FGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRN 140
Query: 287 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 346
+LLK V + +Y LS GE+QR+ +AR +P+ ILDE + +
Sbjct: 141 EAHQLLKLVGMSAKAQQYIG--------YLSTGEKQRVMIARALMGQPQVLILDEPAAGL 192
Query: 347 TTDMEERFCAKVRAM-----GTSCITISHRP--ALVAFHDVVLSLDGE 387
E + + ++ + I ++H F ++L DG+
Sbjct: 193 DFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQ 240
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 5e-08
Identities = 40/219 (18%), Positives = 75/219 (34%), Gaps = 64/219 (29%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT-------KPSQHIDEEAG 906
++++++I G ++ G NG+GK+++ +L P SG++ K +
Sbjct: 38 KKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97
Query: 907 SGCGIFYVPQR-------PYTCLGT----LRDQI-IYPLSREEAELRALKLHGKGEKLVD 954
I +V + I +Y +E A +L
Sbjct: 98 H---IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQL--------- 145
Query: 955 TTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFG 1014
L+ V +S ++ LS GE+QR+ +AR +P+
Sbjct: 146 ------------LKLVGMSAKAQQ---------YIGY-LSTGEKQRVMIARALMGQPQVL 183
Query: 1015 ILDECTNATSVDVE------EQLYRLAKD---MGITFVT 1044
ILDE +D L L+ + + +VT
Sbjct: 184 ILDEPAAG--LDFIARESLLSILDSLSDSYPTLAMIYVT 220
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-17
Identities = 47/240 (19%), Positives = 91/240 (37%), Gaps = 31/240 (12%)
Query: 157 SRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGP 216
+ + + + ++V G+ +E +++ G + I GP
Sbjct: 261 DENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGP 320
Query: 217 NGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQL-IYPLT 275
NG GK++ ++L G+ G I + + + Y PQ + +Y L
Sbjct: 321 NGIGKTTFVKMLAGVEEPTEGKI-------EWDLTVAYKPQY-----IKADYEGTVYELL 368
Query: 276 SDQEVEPLTHGGMV-ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 334
S + L ELLK + + L DR +ELS GE QR+ +A
Sbjct: 369 SKIDASKLNSNFYKTELLKPLGIIDLYDREV--------NELSGGELQRVAIAATLLRDA 420
Query: 335 KFAILDECTSAVTTDMEERF-CAKV-----RAMGTSCITISHRPALV-AFHDVVLSLDGE 387
+LDE ++ + D+E+R ++ + + + H ++ D ++ +GE
Sbjct: 421 DIYLLDEPSAYL--DVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGE 478
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 2e-15
Identities = 54/217 (24%), Positives = 88/217 (40%), Gaps = 38/217 (17%)
Query: 195 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--LVSGHIAKPGV-----GSD 247
N V V+ G + I GPNG+GKS+ ++L G L + + GV G++
Sbjct: 34 NAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNE 93
Query: 248 L--------NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTH----GGMVELLKNV 295
L N EI V + Y LI + +E L G + E++K +
Sbjct: 94 LQNYFEKLKNGEIRPVVKPQYVD-------LIPKAVKGKVIELLKKADETGKLEEVVKAL 146
Query: 296 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--VTTDME-E 352
+LE +L+R LS GE QR+ +A F DE +S + +
Sbjct: 147 ELENVLEREI--------QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAA 198
Query: 353 RFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEG 388
R ++ G S + + H A++ D++ + GE
Sbjct: 199 RAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEP 235
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 5e-08
Identities = 36/205 (17%), Positives = 68/205 (33%), Gaps = 49/205 (23%)
Query: 858 FEIVPGKSLLVTGPNGSGKSSVFRVLRG-LWPVVSGSLTKPSQHIDEEAGS--------- 907
+ G + + GPNG+GKS+ ++L G L P + G I G+
Sbjct: 42 PVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKL 101
Query: 908 -GCGIFYVPQRPYTCL--GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLK 964
I V + Y L ++ ++I L + + + ++ K ++ N+L+ ++
Sbjct: 102 KNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEV----VKALELENVLEREIQ 157
Query: 965 TILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATS 1024
LS GE QR+ +A F DE ++
Sbjct: 158 H---------------------------LSGGELQRVAIAAALLRNATFYFFDEPSSYLD 190
Query: 1025 VDVEEQLYRL-----AKDMGITFVT 1044
+ R + + V
Sbjct: 191 IRQRLNAARAIRRLSEEGKSVLVVE 215
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-07
Identities = 39/199 (19%), Positives = 69/199 (34%), Gaps = 56/199 (28%)
Query: 857 TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 916
EI G+ + + GPNG GK++ ++L G+ G + + Y PQ
Sbjct: 306 PGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLT-----------VAYKPQ 354
Query: 917 RPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL 975
GT+ +++ + + Y +L+ + + L
Sbjct: 355 YIKADYEGTVY-ELLSKIDASKLNSNF-------------------YKTELLKPLGIIDL 394
Query: 976 LERE--EVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ--- 1030
+RE E LS GE QR+ +A +LDE + +DVE++
Sbjct: 395 YDREVNE------------LSGGELQRVAIAATLLRDADIYLLDEPSAY--LDVEQRLAV 440
Query: 1031 ---LYRLAKDMGIT--FVT 1044
+ L + T V
Sbjct: 441 SRAIRHLMEKNEKTALVVE 459
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 2e-17
Identities = 44/206 (21%), Positives = 83/206 (40%), Gaps = 37/206 (17%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 253
G+ +E ++ G + I GPNG GK++ ++L G+ G + + + +
Sbjct: 368 GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-------EWDLTVA 420
Query: 254 YVPQR----PYTAVGTLRDQLIYP-LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEK 308
Y PQ V L ++ L S+ ELLK + + L DR
Sbjct: 421 YKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKT--------ELLKPLGIIDLYDRNV--- 469
Query: 309 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF-CAKV-----RAMG 362
++LS GE QR+ +A +LDE ++ + D+E+R ++
Sbjct: 470 -----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYL--DVEQRLAVSRAIRHLMEKNE 522
Query: 363 TSCITISHRPALV-AFHDVVLSLDGE 387
+ + + H ++ D ++ +GE
Sbjct: 523 KTALVVEHDVLMIDYVSDRLIVFEGE 548
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-15
Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 37/205 (18%)
Query: 195 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL-------WPLVSGHIAKPGVGSD 247
N V V+ G + I GPNG+GK++ ++L G ++ + G++
Sbjct: 104 NAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE 163
Query: 248 L--------NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTH----GGMVELLKNV 295
L N EI V + Y L+ + E L G E++K +
Sbjct: 164 LQNYFERLKNGEIRPVVKPQYVD-------LLPKAVKGKVRELLKKVDEVGKFEEVVKEL 216
Query: 296 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--VTTDME-E 352
+LE +LDR +LS GE QR+ +A K F DE +S + ++
Sbjct: 217 ELENVLDREL--------HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVA 268
Query: 353 RFCAKVRAMGTSCITISHRPALVAF 377
R ++ G + + + H A++ +
Sbjct: 269 RVIRRLANEGKAVLVVEHDLAVLDY 293
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 38/215 (17%), Positives = 68/215 (31%), Gaps = 49/215 (22%)
Query: 848 SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP------VVSGSLTKPSQHI 901
+ G + + GPNG+GK++ ++L G S +
Sbjct: 102 GVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161
Query: 902 DE-----EAGSGCGIFYVPQRPYTCL--GTLRDQIIYPLSREEAELRALKLHGKGEKLVD 954
+E E I V + Y L ++ ++ L + + + ++ K ++
Sbjct: 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEV----VKELE 217
Query: 955 TTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFG 1014
N+LD L LS GE QR+ +A K F
Sbjct: 218 LENVLDRELHQ---------------------------LSGGELQRVAIAAALLRKAHFY 250
Query: 1015 ILDECTNA----TSVDVEEQLYRLAK-DMGITFVT 1044
DE ++ + V + RLA + V
Sbjct: 251 FFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE 285
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 52/198 (26%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915
EI G+ + + GPNG GK++ ++L G+ G + + Y P
Sbjct: 375 EPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT-----------VAYKP 423
Query: 916 QRPYTCL-GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY 974
Q GT+ +++ K+ + + Y +L+ + +
Sbjct: 424 QYIKAEYEGTVY-ELL-------------------SKIDSSKLNSNFYKTELLKPLGIID 463
Query: 975 LLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ---- 1030
L +R V LS GE QR+ +A +LDE + +DVE++
Sbjct: 464 LYDR-NVE---------DLSGGELQRVAIAATLLRDADIYLLDEPSAY--LDVEQRLAVS 511
Query: 1031 --LYRLAKDMGIT--FVT 1044
+ L + T V
Sbjct: 512 RAIRHLMEKNEKTALVVE 529
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 51/228 (22%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
+ + N L + L + G L + G NG GKS+L +L G+ + G I
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-- 62
Query: 242 PGVGSDLNKEIFYVPQR-----PYTA-----------VGTLRDQLIYPLTSDQEVEPLTH 285
++ + I +VPQ Y+ + T P + D +V
Sbjct: 63 -----EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK----PKSHDYQV----- 108
Query: 286 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
++ L ++L +L R LS G++Q + +AR + K +LDE TSA
Sbjct: 109 --AMQALDYLNLTHLAKREF--------TSLSGGQRQLILIARAIASECKLILLDEPTSA 158
Query: 346 VTTDM--EERFCAKV----RAMGTSCITISHRPALVA-FHDVVLSLDG 386
+ D+ ++ + + ++ + + +H+P V + L L+
Sbjct: 159 L--DLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNK 204
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 48/212 (22%), Positives = 80/212 (37%), Gaps = 52/212 (24%)
Query: 847 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAG 906
++ L +QL F++ G L V G NG GKS++ +L G+ + G + E
Sbjct: 15 QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI--------EVYQ 66
Query: 907 SGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKG--------EKLVDTTNI 958
S I +VPQ + S + L H ++
Sbjct: 67 S---IGFVPQFF---------SSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM---- 110
Query: 959 LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1018
L+ + L++L +RE LS G++Q + +AR + K +LDE
Sbjct: 111 ------QALDYLNLTHLAKRE----------FTSLSGGQRQLILIARAIASECKLILLDE 154
Query: 1019 CTN----ATSVDVEEQLYRLAKDMGITFVTSS 1046
T+ A V L LA+ +T V ++
Sbjct: 155 PTSALDLANQDIVLSLLIDLAQSQNMTVVFTT 186
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 6e-15
Identities = 33/162 (20%), Positives = 72/162 (44%), Gaps = 27/162 (16%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV-GSDLNKEI 252
++E +T+ +E G+ + GPNG GK++L + + + G I GV + + +I
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI 80
Query: 253 FYVPQRP--YTAVGTLRDQL-----IYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDRY 304
F++P+ + ++ D L +Y + ++ + + L++V++ L +
Sbjct: 81 FFLPEEIIVPRKI-SVEDYLKAVASLYGVKVNKNEIM--------DALESVEVLDLKKKL 131
Query: 305 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 346
ELS G +R+ +A + +LD+ A+
Sbjct: 132 ---------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAI 164
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 5e-10
Identities = 36/199 (18%), Positives = 77/199 (38%), Gaps = 43/199 (21%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915
+T I G + GPNG GK+++ + + + G + I + G IF++P
Sbjct: 28 ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGK---IFFLP 84
Query: 916 QRP--YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 973
+ + ++ D + A L +K + + + LE V +
Sbjct: 85 EEIIVPRKI-SVEDYLKA-----VASLYGVK-------------VNKNEIMDALESVEVL 125
Query: 974 YLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVE----- 1028
L ++++G LS G +R+ +A + +LD+ ++D +
Sbjct: 126 DL--KKKLG---------ELSQGTIRRVQLASTLLVNAEIYVLDDPV--VAIDEDSKHKV 172
Query: 1029 -EQLYRLAKDMGITFVTSS 1046
+ + + K+ GI ++S
Sbjct: 173 LKSILEILKEKGIVIISSR 191
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 2e-14
Identities = 110/730 (15%), Positives = 218/730 (29%), Gaps = 224/730 (30%)
Query: 46 EESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTS 105
E Q ++K + D++ +QD L +I+ +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK------DAVSG 63
Query: 106 TLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGY---ADRIHELMVISRELSI 162
TL ++ L ++ F R+N Y I
Sbjct: 64 TL---RLFWTLLSKQEEMVQKFVE------EVLRIN----YKFLMSPIKT---------- 100
Query: 163 EDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNV----LVENLT---LKVEPGSNLLITG 215
E + P +R Y + + + ++ +V NV L L++ P N+LI G
Sbjct: 101 EQRQPSMM-TRMYIEQRDRL-YNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 216 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 275
GSGK+ + V ++ +IF++ + +
Sbjct: 158 VLGSGKTW----------VALDVCLSYKVQCKMDFKIFWL------NLKNCN-------S 194
Query: 276 SDQEVEPLTHGGMVELLKNVDLEY--LLDR-YPPEKEINWGDELSLGEQQRLGMARLFYH 332
+ +E L +LL +D + D + I+ Q L RL
Sbjct: 195 PETVLEMLQ-----KLLYQIDPNWTSRSDHSSNIKLRIHS-------IQAEL--RRLLKS 240
Query: 333 KP-KFA--ILDE-CTSAVTTDMEERFCAKVRAMGTSC-ITISHRPALVAFHDVVLSLDGE 387
KP + +L + A SC I ++ R V D +
Sbjct: 241 KPYENCLLVLLNVQNAKA-----------WNAFNLSCKILLTTRFKQVT--DFL------ 281
Query: 388 GEWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVS 447
++ T ++ + T + ++ K + + + Q
Sbjct: 282 ----------SAATTTHISLDHHSMTLTPDEVKSL-----L--LK----YLDCRPQD--- 317
Query: 448 EVIAASPIADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVS 507
LP + P R++ + +
Sbjct: 318 --------------LP-----REVLTTNPRRLS-II-----------AESI--------- 337
Query: 508 R----TWI------SDRIASLNGTTVKYVLEQD--KASFVRLIGVSVLQSAASSFIAPSI 555
R TW D++ ++ +++ VLE + F RL SV S+ I P
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLN-VLEPAEYRKMFDRL---SVFPP--SAHI-P-- 388
Query: 556 RHLTARLALGWR-------IRMTQHLLKSYL----RKNSFYKVFN--MSSKSIDADQRIT 602
T L+L W + + L K L K S + + + K ++
Sbjct: 389 ---TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 603 HD--LEKLTTDLSGLVTGMVKPSVDILWFT---WRMKALTGQRGVAILYAYMLLGLGFLR 657
H ++ + ++ P +D +++ +K + L+ + L FL
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI-EHPERMTLFRMVFLDFRFLE 504
Query: 658 -------SVTPEFGDLTSREQQLEGTFRFM---HERLRAHAESVAFFGGGAREKAMIESR 707
+ G + + QQL+ ++ + ++ F E +I S+
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN-LICSK 563
Query: 708 FRELLEHSLL 717
+ +LL +L+
Sbjct: 564 YTDLLRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 2e-13
Identities = 76/432 (17%), Positives = 130/432 (30%), Gaps = 119/432 (27%)
Query: 700 EKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALV 759
E + +++++L +D+F K + ++++
Sbjct: 10 ETGEHQYQYKDILSV---FEDA-----FVDNFDCKDVQDMP---------------KSIL 46
Query: 760 STQGELAHALRFLASVVSQSFLAFGDILELHRK-----FVELSGGINRIFELEEL-LDAA 813
S + E+ H + VS + F L ++ FVE IN F + + +
Sbjct: 47 SKE-EIDHIIM-SKDAVSGTLRLF-WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 814 QPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNG 873
QP Q Y D+ F+K ++ L RQ E+ P K++L+ G G
Sbjct: 104 QPSMMTRMYIEQR---DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 874 SGKSS-VFRVLRGL-----------WPVVSGSLTKPSQ----------HIDEEAGSGCGI 911
SGK+ V W + + P ID S
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 912 FYVP----------------QRPY-TCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVD 954
+PY CL L + + A L K L+
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN------VQNAKAWNAFNLSCK--ILLT 271
Query: 955 T-----TNILDSYLKTILEGVRLSYLLEREEV-----GWDANLNWEDI-----------L 993
T T+ L + T + S L +EV + + +D+ L
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRL 330
Query: 994 SL-GEQQRLGMARL-----FFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQ 1047
S+ E R G+A I++ N +++ + + F S
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF---DRLSV-FPPS-- 384
Query: 1048 RPALIPFHSLEL 1059
A IP L L
Sbjct: 385 --AHIPTILLSL 394
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 9e-08
Identities = 60/422 (14%), Positives = 112/422 (26%), Gaps = 132/422 (31%)
Query: 22 EYRQLHSRLRTHAESIAFYGGENKEESH-IQQKFKALTRHMRVVLHDHWWFGMIQDFLLK 80
Y + RL + A Y + ++Q L V++ G+
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-----GV------- 158
Query: 81 YLGA--TVAVILI-----IEPFFAG-----NLKPDTSTLGRAKMLSNLRYHTSVIISLFQ 128
LG+ T + + ++ NLK S +ML L Y I +
Sbjct: 159 -LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ---IDPNWT 214
Query: 129 SLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVK 188
S R + S RIH + + R Y
Sbjct: 215 S---------RSDHSSNIKLRIHSI---------------QAELRRLLKSKPYE------ 244
Query: 189 VVTPTGNVL-----VENL-TLKV-EPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA- 240
N L V+N +L+T + + L + HI+
Sbjct: 245 ------NCLLVLLNVQNAKAWNAFNLSCKILLT----TRFKQVTDFLSA---ATTTHISL 291
Query: 241 ---KPGVGSDLNKEIF--YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 295
+ D K + Y+ RP L ++ P + E ++
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRP----QDLPREV-------LTTNPRRLSIIAESIR-- 338
Query: 296 DLEYLLDRYPPEKEINWGD-----ELSLGEQQRLGMARLFYHKPKFAILDE--------- 341
D D + K +N E SL + ++F + ++
Sbjct: 339 DGLATWDNW---KHVNCDKLTTIIESSLNVLEPAEYRKMFD---RLSVFPPSAHIPTILL 392
Query: 342 ------CTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDG--EGEWRVH 393
+ + + S + + + ++ + L L E E+ +H
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKY------SLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 394 DK 395
Sbjct: 447 RS 448
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 3e-07
Identities = 94/661 (14%), Positives = 185/661 (27%), Gaps = 195/661 (29%)
Query: 414 ETDRQ----SDAMAV-EQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVFPQL 468
ET D ++V E AFV + F Q +++ I DH +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFV---DN--FDCKDVQDMPKSILSKEEI-DHIIMSK----- 58
Query: 469 KSAPRILPLRVADMFKVLVPTVFDKQ--GAQLLAVAFLVVSRTWISDRIASLN----GTT 522
+ L T+ KQ Q L ++ ++ I + T
Sbjct: 59 ---DAVSGTLR------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 523 VKYVLEQD----------KASFVRLIGVSVLQSAA-------------------SSFIAP 553
Y+ ++D K + RL L+ A +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 554 SIRHLTARLALG----W----RIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDL 605
+ + W + +L+ + + Y++ + D I +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--MLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 606 EKLTTDLSGLVTGMVKP-SVDIL---WFTWRMKAL---------TGQRGVAILYAYMLLG 652
+ +L L+ + +L A T + V ++
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT---DFLSAA 284
Query: 653 LGFLRSVTPEFGDLTSREQQLEGTF-RFMHER---LRAHAES-----VAFFGGGARE-KA 702
S+ LT E ++ +++ R L + ++ R+ A
Sbjct: 285 TTTHISLDHHSMTLTPDE--VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 703 MIE-------SRFRELLEHSLLLLK----KK--WLFGILDDFVTKQLPHNVTWGLSLLYA 749
+ + ++E SL +L+ +K + +P + LSL++
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA--HIPTIL---LSLIWF 397
Query: 750 ----------MEHKGDRALVSTQGELA----HALRFLASVVSQSFLAFGDILELHRKFVE 795
+ +LV Q + + ++ V + + LHR V+
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE------NEYALHRSIVD 451
Query: 796 LSGGINRIFELEELLDAAQPGDDEISGS--SQHKWNSTDYQDSISFSKLDIITPSQKLLA 853
I + F+ ++L+ P D+ S H N + F +
Sbjct: 452 -HYNIPKTFDSDDLIP---PYLDQYFYSHIGHHLKNIEHPERMTLFRMV----------- 496
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913
L F + K + + S+ L+ L FY
Sbjct: 497 -FLDFRFLEQK-IRHDSTAWNASGSILNTLQQL------------------------KFY 530
Query: 914 VPQRPYTCLGTLRDQIIYPLSREEAELRALK--LHGKGEKLV--DTTNILDSYLKTILEG 969
+PY C + Y E + A+ L E L+ T++L L E
Sbjct: 531 ---KPYIC----DNDPKY-----ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Query: 970 V 970
+
Sbjct: 579 I 579
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 3e-14
Identities = 62/262 (23%), Positives = 106/262 (40%), Gaps = 27/262 (10%)
Query: 123 IISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYI 182
+ S S R + + + + +L+ E ++D G+ + I
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMFIDMENMFDLL--KEETEVKDLP----GAGPLRFQKGRI 54
Query: 183 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 242
EF V G +++++ V PG L + GP+G+GKS++ R+L + + SG I
Sbjct: 55 EFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRID 114
Query: 243 GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKN 294
G + L I VPQ T+ D + Y + EVE +
Sbjct: 115 GQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVE--------AAAQA 166
Query: 295 VDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 351
+ + +P G+ +LS GE+QR+ +AR P +LDE TSA+ T E
Sbjct: 167 AGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNE 226
Query: 352 ERFCAKVRAM--GTSCITISHR 371
A + + + I ++HR
Sbjct: 227 RAIQASLAKVCANRTTIVVAHR 248
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 6e-09
Identities = 49/206 (23%), Positives = 85/206 (41%), Gaps = 59/206 (28%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS----------LTKPS--QHI 901
+ ++F ++PG++L + GP+G+GKS++ R+L + + SG +T+ S HI
Sbjct: 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130
Query: 902 DEEAGSGCGIFYVPQRPYTCLGTLRDQIIY---PLSREEAE--LRALKLHGKGEKLVDTT 956
G+ VPQ T+ D I Y +E E +A +H
Sbjct: 131 --------GV--VPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFP--- 177
Query: 957 NILDSYLKTILE-GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGI 1015
+ Y + E G++LS G GE+QR+ +AR P +
Sbjct: 178 ---EGYRTQVGERGLKLS--------G-------------GEKQRVAIARTILKAPGIIL 213
Query: 1016 LDECTNA----TSVDVEEQLYRLAKD 1037
LDE T+A ++ L ++ +
Sbjct: 214 LDEATSALDTSNERAIQASLAKVCAN 239
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 41/217 (18%), Positives = 74/217 (34%), Gaps = 44/217 (20%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSD 247
+ + L+ +V G L + GPNG+GKS+L + G+ G I G +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATK 70
Query: 248 LNKEIFYVPQRPYTAVGTLRDQLI----YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 303
L Y+ Q+ T + + T + + ++ + L+ L R
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN--------DVAGALALDDKLGR 122
Query: 304 YPPEKEINWGDELSLGEQQRLGMAR-------LFYHKPKFAILDECTSA------VTTDM 350
++LS GE QR+ +A + +LDE ++ D
Sbjct: 123 ST--------NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD- 173
Query: 351 EERFCAKVRAMGTSCITISHRPALVAFH-DVVLSLDG 386
+ + + G + + SH H L G
Sbjct: 174 --KILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKG 208
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 38/215 (17%), Positives = 71/215 (33%), Gaps = 53/215 (24%)
Query: 848 SQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEE 904
++ L+ E+ G+ L + GPNG+GKS++ + G+ GS+ +P +
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSAT 69
Query: 905 AGSGCGIFYVPQRPYTCLG-TLRDQII---YPLSREEAELRALKLHGKGEKLVDTTNILD 960
+ Y+ Q+ + + + +R E
Sbjct: 70 KLALH-RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDV------------------ 110
Query: 961 SYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMAR-------LFFHKPKF 1013
+ L L R + LS GE QR+ +A +
Sbjct: 111 ------AGALALDDKLGRS---TNQ-------LSGGEWQRVRLAAVVLQITPQANPAGQL 154
Query: 1014 GILDECTNATSVDVEEQLYRLAKDM---GITFVTS 1045
+LDE N+ V + L ++ + G+ V S
Sbjct: 155 LLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMS 189
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 3e-14
Identities = 51/219 (23%), Positives = 82/219 (37%), Gaps = 24/219 (10%)
Query: 182 IEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
+ + G + EN++ + PG + + G GSGKS+L L G I
Sbjct: 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQ 78
Query: 241 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLT--SDQEV-EPLTHGGMVEL 291
GV K +PQ+ + GT R L P SDQE+ + G+ +
Sbjct: 79 IDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQEIWKVADEVGLRSV 137
Query: 292 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV--TTD 349
++ LD + G LS G +Q + +AR K K +LDE ++ + T
Sbjct: 138 IEQ--FPGKLDFVLVDG----GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY 191
Query: 350 MEERFCAKVRAMGTSC--ITISHRPALVAFHDVVLSLDG 386
R ++ C I R + D L ++
Sbjct: 192 QIIR--RTLKQAFADCTVILCEARIEAMLECDQFLVIEE 228
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 39/189 (20%), Positives = 66/189 (34%), Gaps = 51/189 (26%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHID---------EE 904
++F I PG+ + + G GSGKS++ L G + ID E+
Sbjct: 38 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQ-----IDGVSWDSITLEQ 91
Query: 905 AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLK 964
G+ +PQ+ + GT R + P + D +
Sbjct: 92 WRKAFGV--IPQKVFIFSGTFRKNLD-PNAAHS----------------------DQEIW 126
Query: 965 TILEGVRLSYLLEREEVGWDANL-----NWEDILSLGEQQRLGMARLFFHKPKFGILDEC 1019
+ + V L ++E+ D L S G +Q + +AR K K +LDE
Sbjct: 127 KVADEVGLRSVIEQFPGKLDFVLVDGGCVL----SHGHKQLMCLARSVLSKAKILLLDEP 182
Query: 1020 TNATSVDVE 1028
+ +D
Sbjct: 183 S--AHLDPV 189
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 69.0 bits (170), Expect = 5e-13
Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 34/210 (16%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
+ V ++ +++ + +P S + GP+G GKS++F +L + +G I
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 242 PGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY---PLTSDQEVEPLTHGGMVELL 292
G + +I +V Q GT+R+ L Y +D+++ ++L
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLW--------QVL 113
Query: 293 KNVDLEYLLDRYPP-------EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
++ P E+ G ++S G++QRL +AR F PK +LDE T++
Sbjct: 114 DLAFARSFVENMPDQLNTEVGER----GVKISGGQRQRLAIARAFLRNPKILMLDEATAS 169
Query: 346 VTTDME-ERFC--AKVRAM-GTSCITISHR 371
+ D E E A M G + + I+HR
Sbjct: 170 L--DSESESMVQKALDSLMKGRTTLVIAHR 197
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 5e-06
Identities = 53/213 (24%), Positives = 81/213 (38%), Gaps = 72/213 (33%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCG--- 910
R ++FE P + GP+G GKS++F +L + +G +T ID G
Sbjct: 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT-----ID-------GQPI 66
Query: 911 -----------IFYVPQRPYTCLGTLRDQIIY----PLSREEAELRALKL---HGKGEKL 952
I +V Q GT+R+ + Y + E+ + L L E +
Sbjct: 67 DNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLW-QVLDLAFARSFVENM 125
Query: 953 VDTTNILDSYLKTILE-GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKP 1011
D + E GV++S G G++QRL +AR F P
Sbjct: 126 P------DQLNTEVGERGVKIS--------G-------------GQRQRLAIARAFLRNP 158
Query: 1012 KFGILDECTNATS-VDVE------EQLYRLAKD 1037
K +LDE AT+ +D E + L L K
Sbjct: 159 KILMLDE---ATASLDSESESMVQKALDSLMKG 188
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 6e-13
Identities = 73/331 (22%), Positives = 125/331 (37%), Gaps = 59/331 (17%)
Query: 83 GATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNR 142
+AV+ G + + + +++ Y ++ SL +G + + R
Sbjct: 259 MGMIAVLWF------GGVLVRNNQMEIGSIMAYTNYLMQIMFSLMM-IGNILNF---IVR 308
Query: 143 LSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLV-ENL 201
S A R+ E V++ + +IE+ + + + F V+ V +
Sbjct: 309 ASASAKRVLE--VLNEKPAIEEAD----NALALPNVEGSVSFENVEFRYFENTDPVLSGV 362
Query: 202 TLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSDLNKEIFYV 255
V+PGS + + G GSGKS+L ++ L G + + DL I V
Sbjct: 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAV 422
Query: 256 PQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKN-------VDLEYLLDRYPP 306
PQ GT+++ L + +D E +VE K + L D
Sbjct: 423 PQETVLFSGTIKENLKWGREDATDDE--------IVEAAKIAQIHDFIISLPEGYDSRVE 474
Query: 307 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV--TTDMEERFCAKVRAM--- 361
N S G++QRL +AR KPK ILD+CTS+V T+ ++
Sbjct: 475 RGGRN----FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITE------KRILDGLKR 524
Query: 362 ---GTSCITISHRPALVAFHDVVLSLDGEGE 389
G + I+ + D +L L EG+
Sbjct: 525 YTKGCTTFIITQKIPTALLADKILVLH-EGK 554
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 26/206 (12%)
Query: 182 IEFSGVK---VVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 238
IEFS V L +++ + G+ + G GSGKS++ ++L + G
Sbjct: 18 IEFSDVNFSYPKQTNHRTL-KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGD 75
Query: 239 IAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVE 290
I G + + I VPQ T++ ++Y +D+EV +
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVI--------K 127
Query: 291 LLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 347
K+ L ++ P + + G+ +LS GE+QR+ +AR PK I DE TS++
Sbjct: 128 ATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLD 187
Query: 348 TDMEERFCAKVRAM--GTSCITISHR 371
+ E F V + + I I+HR
Sbjct: 188 SKTEYLFQKAVEDLRKNRTLIIIAHR 213
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 46/207 (22%), Positives = 77/207 (37%), Gaps = 62/207 (29%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS----------LTKPS--QHI 901
+ + F I G + + G GSGKS++ ++L + G + S I
Sbjct: 37 KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSII 95
Query: 902 DEEAGSGCGIFYVPQRPYTCLGTLRDQIIY---PLSREEAE--LRALKLHGKGEKLVD-- 954
GI VPQ T++ I+Y + EE ++ +L+ E L
Sbjct: 96 --------GI--VPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKW 145
Query: 955 TTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFG 1014
T + + G++LS G GE+QR+ +AR PK
Sbjct: 146 DTIVGNK-------GMKLS--------G-------------GERQRIAIARCLLKDPKIV 177
Query: 1015 ILDECTNA----TSVDVEEQLYRLAKD 1037
I DE T++ T ++ + L K+
Sbjct: 178 IFDEATSSLDSKTEYLFQKAVEDLRKN 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 30/161 (18%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKE------ 251
++ ++ ++E G + GPNG+GK++ R++ L SG + G ++ +E
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGK--NVVEEPHEVRK 88
Query: 252 -IFYVPQRP--YTAVGTLRDQL-----IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 303
I Y+P+ Y + + L Y S E+E + + L +
Sbjct: 89 LISYLPEEAGAYRNM-QGIEYLRFVAGFYAS-SSSEIEEMVE----RATEIAGLGEKIKD 142
Query: 304 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 344
S G ++L +AR P+ AILDE TS
Sbjct: 143 RV--------STYSKGMVRKLLIARALMVNPRLAILDEPTS 175
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 7e-08
Identities = 39/209 (18%), Positives = 75/209 (35%), Gaps = 58/209 (27%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS-------LTKPSQHIDEEAGSG 908
++FEI G+ + GPNG+GK++ R++ L SG + + + +
Sbjct: 34 ISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS-- 91
Query: 909 CGIFYVPQRP--YTCLGTLRDQI-----IYPLSREEAELRALKLHGKGEKLVDTTNILDS 961
Y+P+ Y + + + Y S E E + ++ +
Sbjct: 92 ----YLPEEAGAYRNM-QGIEYLRFVAGFYASSSSEIEEMVERA----TEIAGLGEKIKD 142
Query: 962 YLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1021
+ T S G ++L +AR P+ ILDE T+
Sbjct: 143 RVST---------------------------YSKGMVRKLLIARALMVNPRLAILDEPTS 175
Query: 1022 ----ATSVDVEEQLYRLAKDMGIT-FVTS 1045
+ +V + L + ++ G+T V+S
Sbjct: 176 GLDVLNAREVRKILKQASQ-EGLTILVSS 203
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 45/203 (22%)
Query: 159 ELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNG 218
+ +K+ Q N +R + + + FS + G +++++ K+E G L + G G
Sbjct: 18 FGELFEKAKQNNNNRKTSNGDDSLSFSNF---SLLGTPVLKDINFKIERGQLLAVAGSTG 74
Query: 219 SGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLI------- 271
+GK+SL ++ G G I G I + Q + GT+++ +I
Sbjct: 75 AGKTSLLMMIMGELEPSEGKIKHSG-------RISFCSQNSWIMPGTIKENIIGVSYDEY 127
Query: 272 -YP-------LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 323
Y L D + L E I LS G++ R
Sbjct: 128 RYRSVIKACQLEEDISK--FAEKDNIVL--------------GEGGIT----LSGGQRAR 167
Query: 324 LGMARLFYHKPKFAILDECTSAV 346
+ +AR Y +LD +
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYL 190
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 17/131 (12%)
Query: 800 INRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFE 859
+ + E + + +++ N DS+SFS + + + + F+
Sbjct: 7 MENVTAFWEEGFGELFEKAKQNNNNRKTSNG---DDSLSFSNF---SLLGTPVLKDINFK 60
Query: 860 IVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPY 919
I G+ L V G G+GK+S+ ++ G G + +G I + Q +
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK--------HSGR---ISFCSQNSW 109
Query: 920 TCLGTLRDQII 930
GT+++ II
Sbjct: 110 IMPGTIKENII 120
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 7e-11
Identities = 44/218 (20%), Positives = 79/218 (36%), Gaps = 44/218 (20%)
Query: 178 EANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 237
E ++ + G ++ + + ++ G I G NG GKS+LF+ G+ SG
Sbjct: 4 EDYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG 63
Query: 238 HIAKPGVG--------SDLNKEIFYVPQRPYTAVGTLRDQLIYPL-------------TS 276
I L + I V Q P +QL
Sbjct: 64 RILFDNKPIDYSRKGIMKLRESIGIVFQDP-------DNQLFSASVYQDVSFGAVNMKLP 116
Query: 277 DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 336
+ E+ LK +E+L D+ LS G+++R+ +A + +PK
Sbjct: 117 EDEIRKRVD----NALKRTGIEHLKDKPT--------HCLSFGQKKRVAIAGVLVMEPKV 164
Query: 337 AILDECTS----AVTTDMEERFCAKVRAMGTSCITISH 370
ILDE T+ +++ + + +G + I +H
Sbjct: 165 LILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATH 202
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 4e-06
Identities = 42/233 (18%), Positives = 80/233 (34%), Gaps = 78/233 (33%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRG-LWP-----VVSGSLTKPSQHIDEEAGS 907
+ + I G+ + G NG GKS++F+ G L P + S+ +
Sbjct: 25 KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84
Query: 908 GCGIFYVPQRPYTCLGTLRDQIIYP--------------LSREEAELRALKLHGKGEKLV 953
GI V Q P +Q+ L +E R
Sbjct: 85 SIGI--VFQDP-------DNQLFSASVYQDVSFGAVNMKLPEDEIRKRV----------- 124
Query: 954 DTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKF 1013
L+ + +L ++ LS G+++R+ +A + +PK
Sbjct: 125 ----------DNALKRTGIEHLKDKP----------THCLSFGQKKRVAIAGVLVMEPKV 164
Query: 1014 GILDECTNATS-------VDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLEL 1059
ILDE T+ ++ + L + K++GIT + ++ H +++
Sbjct: 165 LILDE---PTAGLDPMGVSEIMKLLVEMQKELGITIIIAT--------HDIDI 206
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 8e-11
Identities = 65/331 (19%), Positives = 130/331 (39%), Gaps = 53/331 (16%)
Query: 40 YGGENKEESHIQQKFKALTRH-----MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEP 94
+GG+ E ++F ++ M++V +IQ + A++A+ ++
Sbjct: 220 FGGQEVE----TKRFDKVSNKMRLQGMKMVSASSISDPIIQ-LI-----ASLALAFVL-- 267
Query: 95 FFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHEL 153
+ A D+ T G + +I+L + L +L+ + + R + +
Sbjct: 268 YAASFPSVMDSLTAG--TITVVFSS----MIALMRPLKSLTNVNAQFQRGMAACQTLFAI 321
Query: 154 MVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLL 212
+ + + + G R +EF V P V N+ LK+ G +
Sbjct: 322 L--------DSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVA 373
Query: 213 ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTL 266
+ G +GSGKS++ ++ + + GHI G + L ++ V Q + T+
Sbjct: 374 LVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTV 433
Query: 267 RDQLIY---PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE---LSLGE 320
+ + Y S +++E E + +++ + G+ LS G+
Sbjct: 434 ANNIAYARTEEYSREQIE--------EAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485
Query: 321 QQRLGMARLFYHKPKFAILDECTSAVTTDME 351
+QR+ +AR ILDE TSA+ T+ E
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALDTESE 516
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 2e-07
Identities = 93/497 (18%), Positives = 169/497 (34%), Gaps = 122/497 (24%)
Query: 579 LRKNSFYKVFNMSSKSIDADQ------RITHDLEKLTTDLSGLVTGMVKPSVDI------ 626
+R+ F + M D RIT+D E++ + SG + +V+ I
Sbjct: 100 MRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIM 159
Query: 627 -LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTF-RFMHERL 684
+++W+ L+ IL + +R V+ F ++ Q G + L
Sbjct: 160 MFYYSWQ---LS-----IILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQML 211
Query: 685 RAHAESVAFFGGGAREKAMIESRFRELLEHSL-LLLKKKWLFGILDDFVTKQLPHNVTWG 743
+ H E + F ++ + RF ++ +K I D + QL ++
Sbjct: 212 KGHKEVLIF----GGQEVETK-RFDKVSNKMRLQGMKMVSASSISDPII--QLIASLALA 264
Query: 744 LSLLYAMEHKGDRALVS--TQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGI- 800
L A +++ T G + V S + L + G+
Sbjct: 265 FVLYAA----SFPSVMDSLTAGTIT-------VVFSSMIALMRPLKSLTNVNAQFQRGMA 313
Query: 801 --NRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLA-RQLT 857
+F + + G I + F + P +++ A R +
Sbjct: 314 ACQTLFAILDSEQEKDEGKRVID----------RATGDLEFRNVTFTYPGREVPALRNIN 363
Query: 858 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS----------LTKPS--QHIDEEA 905
+I GK++ + G +GSGKS++ ++ + + G T S +
Sbjct: 364 LKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV---- 419
Query: 906 GSGCGIFYVPQRPYTCLGTLRDQIIY----PLSREEAELRALKL---HGKGEKLVD--TT 956
+ V Q + T+ + I Y SRE+ E A ++ K+ + T
Sbjct: 420 ----AL--VSQNVHLFNDTVANNIAYARTEEYSREQIE-EAARMAYAMDFINKMDNGLDT 472
Query: 957 NILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGIL 1016
I + GV LS G G++QR+ +AR IL
Sbjct: 473 IIGE-------NGVLLS--------G-------------GQRQRIAIARALLRDSPILIL 504
Query: 1017 DECTNATS-VDVE-EQL 1031
DE ATS +D E E+
Sbjct: 505 DE---ATSALDTESERA 518
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 39/162 (24%)
Query: 199 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 258
+++ K+E G L + G G+GK+SL ++ G G I G I + Q
Sbjct: 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------RISFCSQF 77
Query: 259 PYTAVGTLRDQLIYPLTSDQE--------------VEPLTHGGMVELLKNVDLEYLLDRY 304
+ GT+++ +I+ ++ D+ + + L
Sbjct: 78 SWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVL------------- 124
Query: 305 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 346
E I LS G++ R+ +AR Y +LD +
Sbjct: 125 -GEGGIT----LSGGQRARISLARAVYKDADLYLLDSPFGYL 161
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 3e-05
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913
+ + F+I G+ L V G G+GK+S+ ++ G G + +G I +
Sbjct: 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH--------SGR---ISF 73
Query: 914 VPQRPYTCLGTLRDQIIY 931
Q + GT+++ II+
Sbjct: 74 CSQFSWIMPGTIKENIIF 91
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 1e-10
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 38/212 (17%)
Query: 182 IEFSGVKVV-TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
I F ++ P V+++N+ L ++ G + I G +GSGKS+L +++ + +G +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 241 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLT-----HGG 287
G + L +++ V Q ++ D + P S ++V H
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 288 MVELLKNVDLEYLLDRYPPEK------EINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
+ EL E E G LS G++QR+ +AR + PK I DE
Sbjct: 128 ISEL--------------REGYNTIVGE--QGAGLSGGQRQRIAIARALVNNPKILIFDE 171
Query: 342 CTSAVTTDMEERFC-AKVRAM-GTSCITISHR 371
TSA+ + E + G + I I+HR
Sbjct: 172 ATSALDYESEHVIMRNMHKICKGRTVIIIAHR 203
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 67/217 (30%)
Query: 847 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS----------LTK 896
P ++ + I G+ + + G +GSGKS++ ++++ + +G
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 78
Query: 897 PS--QHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIY---PLSREEAELRALKL---HGK 948
+ + G+ V Q ++ D I +S E+ A KL H
Sbjct: 79 NWLRRQV--------GV--VLQDNVLLNRSIIDNISLANPGMSVEKVI-YAAKLAGAHDF 127
Query: 949 GEKLVDTTNILDSYLKTILE-GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLF 1007
+L + Y + E G LS G G++QR+ +AR
Sbjct: 128 ISELR------EGYNTIVGEQGAGLS--------G-------------GQRQRIAIARAL 160
Query: 1008 FHKPKFGILDECTNATS-VDVE------EQLYRLAKD 1037
+ PK I DE ATS +D E ++++ K
Sbjct: 161 VNNPKILIFDE---ATSALDYESEHVIMRNMHKICKG 194
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 1e-10
Identities = 69/397 (17%), Positives = 136/397 (34%), Gaps = 65/397 (16%)
Query: 1 MMRNFSPAFGKLMSKEQQLEGEY-RQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 59
+ S F K+ Q G L+ H + YGG+ E +++F ++
Sbjct: 181 AISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKV-VLSYGGQEVE----RKRFDKVSN 235
Query: 60 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRY 118
MR I D +++ + + ++ F A T G
Sbjct: 236 SMRQQTMKLVSAQSIADPVIQMIASLALFAVL---FLASVDSIRAELTPG---------- 282
Query: 119 HTSVIISLFQSLGTLSISSRRLNRLSGY-------ADRIHELMVISRELSIEDKSPQRNG 171
+F ++ L + L ++ + LM + ++ + NG
Sbjct: 283 ---TFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLM--------DLETERDNG 331
Query: 172 SRNYFSEANYIEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG 230
++ V +++ + G + + G +GSGKS++ +
Sbjct: 332 KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTR 391
Query: 231 LWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY---PLTSDQEVE 281
+ + SG I G ++L + V Q + T+ + + Y + +++E
Sbjct: 392 FYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIE 451
Query: 282 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE---LSLGEQQRLGMARLFYHKPKFAI 338
+ + ++ P + G+ LS G++QR+ +AR I
Sbjct: 452 --------QAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLI 503
Query: 339 LDECTSAVTTDME-ERF--CAKVRAM-GTSCITISHR 371
LDE TSA+ D E ER A + + I+HR
Sbjct: 504 LDEATSAL--DTESERAIQAALDELQKNKTVLVIAHR 538
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 1e-06
Identities = 97/517 (18%), Positives = 169/517 (32%), Gaps = 134/517 (25%)
Query: 579 LRKNSFYKVFNMSSKSIDADQ------RITHDLEKLTTDLSGLVTGMVKPSVDI------ 626
+R+ F +M + D + RIT+D E++ S + +V+ I
Sbjct: 100 MRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTL 159
Query: 627 -LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTF-RFMHERL 684
W +W++ +L +L + + V+ F ++ Q G + L
Sbjct: 160 MFWNSWQL-SL-------VLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQML 211
Query: 685 RAHAESVAFFGGGAREKAMIESRFRELLEHSL-LLLKKKWLFGILDDFVTKQLPHNVTWG 743
+ H +++ ++ + RF ++ +K I D + Q+ ++
Sbjct: 212 KGHKVVLSY----GGQEVERK-RFDKVSNSMRQQTMKLVSAQSIADPVI--QMIASLALF 264
Query: 744 LSLLYAMEHKGDRALVS--TQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGI- 800
L A ++ + T G V S F + L E G+
Sbjct: 265 AVLFLA----SVDSIRAELTPGTFT-------VVFSAMFGLMRPLKALTSVTSEFQRGMA 313
Query: 801 --NRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLA-RQLT 857
+F L +L G E + + ++ A ++
Sbjct: 314 ACQTLFGLMDLETERDNGKYEAE----------RVNGEVDVKDVTFTYQGKEKPALSHVS 363
Query: 858 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQR 917
F I GK++ + G +GSGKS++ + + V SGS+ +D R
Sbjct: 364 FSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC-----LDG----------HDVR 408
Query: 918 PYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNIL--DSYLKTILEGVRLSYL 975
Y L LR LV L D TI + +
Sbjct: 409 DYK-LTNLRRHF---------------------ALVSQNVHLFND----TIANNIAYAAE 442
Query: 976 LE--REEV------------------GWDANLNWED--ILSLGEQQRLGMARLFFHKPKF 1013
E RE++ G D + E+ LS G++QR+ +AR
Sbjct: 443 GEYTREQIEQAARQAHAMEFIENMPQGLDTVIG-ENGTSLSGGQRQRVAIARALLRDAPV 501
Query: 1014 GILDECTNATS-VDVE-EQ-----LYRLAKDMGITFV 1043
ILDE ATS +D E E+ L L K+ V
Sbjct: 502 LILDE---ATSALDTESERAIQAALDELQKNK-TVLV 534
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 3e-10
Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 39/162 (24%)
Query: 199 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 258
+T + G+ + + G G GKSSL L V GH+A G + YVPQ+
Sbjct: 22 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------SVAYVPQQ 74
Query: 259 PYTAVGTLRDQLIYPLTSDQE--------------VEPLTHGGMVELLKNVDLEYLLDRY 304
+ +LR+ +++ ++ +E L G E+
Sbjct: 75 AWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEI------------- 121
Query: 305 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 346
EK +N LS G++QR+ +AR Y + D+ SAV
Sbjct: 122 -GEKGVN----LSGGQKQRVSLARAVYSNADIYLFDDPLSAV 158
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 835 DSISFSKLDII-TPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS 893
+SI+ S +TF I G + V G G GKSS+ L V G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 894 LTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIY 931
+ GS + YVPQ+ + +LR+ I++
Sbjct: 62 VAI--------KGS---VAYVPQQAWIQNDSLRENILF 88
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 53/208 (25%), Positives = 80/208 (38%), Gaps = 44/208 (21%)
Query: 168 QRNGSRNYFSEANYIEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSL 224
+ + + I+ S + V G ++ N++L V G + G +G+GKS+L
Sbjct: 11 HHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTL 70
Query: 225 FRVLGGLWPLVSGHIAKPGV------GSDLNKE------IF----YVPQRPYTAVGTLRD 268
R + L G + G S+L K IF + R T+
Sbjct: 71 IRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR------TVFG 124
Query: 269 QLIYPL----TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 324
+ PL T EV+ ELL V L D YP LS G++QR+
Sbjct: 125 NVALPLELDNTPKDEVKRRVT----ELLSLVGLGDKHDSYP--------SNLSGGQKQRV 172
Query: 325 GMARLFYHKPKFAILDECTSAV---TTD 349
+AR PK + D+ TSA+ TT
Sbjct: 173 AIARALASNPKVLLCDQATSALDPATTR 200
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 7e-10
Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 39/183 (21%)
Query: 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
IEF GV+ + P G V ++ ++ G + + GP+GSGK+++ R++ GL G +
Sbjct: 14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 241 KPGVGSDLNKEIFYVP--QRPYTAVG------------TLRDQLIYPL----TSDQEVEP 282
G K + +P +R VG T+ D + + L E++
Sbjct: 74 IGG------KRVTDLPPQKRN---VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDA 124
Query: 283 LTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 342
ELL+ + LE +R+P ELS G+QQR+ +AR +P+ + DE
Sbjct: 125 RVR----ELLRFMRLESYANRFP--------HELSGGQQQRVALARALAPRPQVLLFDEP 172
Query: 343 TSA 345
+A
Sbjct: 173 FAA 175
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 9e-10
Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 44/167 (26%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 253
N ++NL+LKVE G +I GP G+GK+ ++ G SG I G K++
Sbjct: 12 KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDG------KDVT 65
Query: 254 YVP--QRPYTAVG------------TLRDQLIYPLT-----SDQEVEPLTHGGMVELLKN 294
+ + + ++ L + + + V + ++
Sbjct: 66 DLSPEKHD---IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVL--------DTARD 114
Query: 295 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
+ +E+LLDR P LS GEQQR+ +AR PK +LDE
Sbjct: 115 LKIEHLLDRNP--------LTLSGGEQQRVALARALVTNPKILLLDE 153
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 3e-09
Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 35/170 (20%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 253
++ +++L ++PG L I G +G GK++L R L G SG I+ G + +
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGK--TIFSKNT 73
Query: 254 YVP--QRPYTAVG------------TLRDQLIYPL----TSDQEVEPLTHGGMVELLKNV 295
+P +R +G T+ + Y L + +L+
Sbjct: 74 NLPVRERR---LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE----AMLELT 126
Query: 296 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
+ L RYP ELS G+QQR +AR P+ +LDE SA
Sbjct: 127 GISELAGRYP--------HELSGGQQQRAALARALAPDPELILLDEPFSA 168
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 5e-09
Identities = 55/212 (25%), Positives = 81/212 (38%), Gaps = 41/212 (19%)
Query: 182 IEFSGVKVV----TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 237
IE V + TP +EN++L + G LL+ G GSGKS+L +++ GL SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 238 HIAKPGVGSDLN---KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE--PLTHGGMVELL 292
+ G + I Q P DQ EV + +
Sbjct: 63 DVLYDGERKKGYEIRRNIGIAFQYP-------EDQFFAE-RVFDEVAFAVKNFYPDRDPV 114
Query: 293 KNV---------DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 343
V D + DR P LS GE++R+ +A + H+P ILDE
Sbjct: 115 PLVKKAMEFVGLDFDSFKDRVP--------FFLSGGEKRRVAIASVIVHEPDILILDEPL 166
Query: 344 SAVTTDMEER-----FCAKVRAMGTSCITISH 370
+ D E + K + +G + I ISH
Sbjct: 167 VGL--DREGKTDLLRIVEKWKTLGKTVILISH 196
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 5e-09
Identities = 62/231 (26%), Positives = 95/231 (41%), Gaps = 44/231 (19%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
+ +K V +L + ++L V+ G + I G +GSGKS+L +LG L G +
Sbjct: 5 LRAENIKKVIRGYEIL-KGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63
Query: 242 PGVG-SDL---------NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGM-- 288
G N+++ +V Q + LI LT+ + V P+ G
Sbjct: 64 EGKEVDYTNEKELSLLRNRKLGFVFQF-H--------YLIPELTALENVIVPMLKMGKPK 114
Query: 289 -------VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
LL + L L R P ELS GEQQR+ +AR ++P DE
Sbjct: 115 KEAKERGEYLLSELGLGDKLSRKP--------YELSGGEQQRVAIARALANEPILLFADE 166
Query: 342 CT----SAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSL-DGE 387
T SA T + + F K+ GTS + ++H L L + DG+
Sbjct: 167 PTGNLDSANTKRVMDIF-LKINEGGTSIVMVTHERELAELTHRTLEMKDGK 216
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 2e-08
Identities = 73/346 (21%), Positives = 130/346 (37%), Gaps = 50/346 (14%)
Query: 47 ESHIQQKFKAL-TRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDT 104
E + + F T + L W F + I++I L +
Sbjct: 219 EDNEAKNFDKKNTNFLTRALKHTRWNAYS--FAAINTVTDIGPIIVI--GVGAYLAISGS 274
Query: 105 STLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIED 164
T+G + + + Y + LF L L S L + DR+ +L+ + I++
Sbjct: 275 ITVG--TLAAFVGY----LELLFGPLRRLVASFTTLTQSFASMDRVFQLI--DEDYDIKN 326
Query: 165 KS-----PQRNGSRNYFSEANYIEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNG 218
+ G I+ V + +++ L +E G + G +G
Sbjct: 327 GVGAQPIEIKQGR---------IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSG 377
Query: 219 SGKSSLFRVLGGLWPLVSGHIAKPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIY 272
GKS+L ++ + + SG I G L +I V Q T+++ ++
Sbjct: 378 GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL 437
Query: 273 --PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPP--EKEIN-WGDELSLGEQQRLGMA 327
P +D+EV E K + + P + E+ G +LS G++QRL +A
Sbjct: 438 GRPTATDEEVV--------EAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 489
Query: 328 RLFYHKPKFAILDECTSAVTTDMEER-FCAKVRAM-GTSCITISHR 371
R+F + P ILDE TSA+ + E A + + ++HR
Sbjct: 490 RIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHR 535
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 4e-04
Identities = 99/601 (16%), Positives = 193/601 (32%), Gaps = 149/601 (24%)
Query: 497 QLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIR 556
++ A + + + I I L + V+ + + + + FI +R
Sbjct: 15 RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVR 74
Query: 557 HLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQ------RITHDLEKLTT 610
+ + +L +RK + + +S++ +Q R+ +D+E+
Sbjct: 75 PPIEFIRQYLAQWTSNKILYD-IRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKD 133
Query: 611 DLSGLVTGMVKPSVDI-------LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEF 663
+ + + + I + ++ + I Y+L F +
Sbjct: 134 FILTGLMNIWLDCITIIIALSIMFFLDVKLTLAA----LFIFPFYILTVYVFFGRLRKLT 189
Query: 664 -------GDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFREL-LEHS 715
++ F+HER++ + +F A E + F +
Sbjct: 190 RERSQALAEVQG----------FLHERVQGISVVKSF----AIEDNEAK-NFDKKNTNFL 234
Query: 716 LLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRAL--VSTQGELAHALRFLA 773
LK F ++ + + A+ T G L
Sbjct: 235 TRALKHTRWNAYS--FAAINTVTDIGPIIVIGVG----AYLAISGSITVGTL-------- 280
Query: 774 SVVSQSFLA-----FGDILELHRKFVELSGGI---NRIFEL----EELLDAAQPGD-DEI 820
+F+ FG + L F L+ +R+F+L ++ + +
Sbjct: 281 ----AAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIK 336
Query: 821 SGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVF 880
G D +SF ++ + + + I G+++ G +G GKS++
Sbjct: 337 QGR-------IDIDH-VSFQ----YNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLI 384
Query: 881 RVLRGLWPVVSGS----------LTKPS--QHIDEEAGSGCGIFYVPQRPYTCLGTLRDQ 928
++ + V SG S I G+ V Q T+++
Sbjct: 385 NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI--------GL--VQQDNILFSDTVKEN 434
Query: 929 IIY---PLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 985
I+ + EE A K+ N D + G+D
Sbjct: 435 ILLGRPTATDEEVV-EAAKM----------ANAHD--------------FIMNLPQGYDT 469
Query: 986 NLNWED--ILSLGEQQRLGMARLFFHKPKFGILDECTNATS-VDVE------EQLYRLAK 1036
+ E LS G++QRL +AR+F + P ILDE ATS +D+E E L L+K
Sbjct: 470 EVG-ERGVKLSGGQKQRLSIARIFLNNPPILILDE---ATSALDLESESIIQEALDVLSK 525
Query: 1037 D 1037
D
Sbjct: 526 D 526
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 3e-08
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 33/178 (18%)
Query: 182 IEFSGVKVVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
I V V G V+ ++N+ + +E G I GP+G+GK++ R++ GL +G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 241 KPGVGSDL--NKEIFYVP--QRPYTAV---------GTLRDQLIYPL----TSDQEVEPL 283
L + VP R V T + + +PL S +E+
Sbjct: 64 ---FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR 120
Query: 284 THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
E+ K +D+ ++L+ +P ELS +QQR+ +AR P +LDE
Sbjct: 121 VE----EVAKILDIHHVLNHFP--------RELSGAQQQRVALARALVKDPSLLLLDE 166
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 32/160 (20%)
Query: 200 NLTLKVEPGSNLL-ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP-- 256
L + E G + + GP G+GKS ++ G+ G + G +I +P
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG------ADITPLPPE 68
Query: 257 QRPYTAV---------GTLRDQLIYPL--TSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 305
+R V ++ + Y L E + E+ + + + +LLDR P
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVR----EMAEKLGIAHLLDRKP 124
Query: 306 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
LS GE+QR+ +AR +P+ +LDE SA
Sbjct: 125 --------ARLSGGERQRVALARALVIQPRLLLLDEPLSA 156
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 5e-04
Identities = 44/210 (20%), Positives = 78/210 (37%), Gaps = 69/210 (32%)
Query: 865 SLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP--QRPYTCL 922
LL GP G+GKS ++ G+ G + ++ G I +P +R +
Sbjct: 28 VLL--GPTGAGKSVFLELIAGIVKPDRGEV-----RLN-----GADITPLPPERRG---I 72
Query: 923 G------------TLRDQIIYPL---SREEAELRALKLHGKGEKLVDTTNILDSYLKTIL 967
G ++ I Y L R E + R + +
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRV---------------------REMA 111
Query: 968 EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA----T 1023
E + +++LL+R+ LS GE+QR+ +AR +P+ +LDE +A T
Sbjct: 112 EKLGIAHLLDRKP----------ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKT 161
Query: 1024 SVDVEEQLYRLAKDMGITF--VTSSQRPAL 1051
+ E+L + ++ + VT A
Sbjct: 162 KGVLMEELRFVQREFDVPILHVTHDLIEAA 191
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 30/162 (18%)
Query: 200 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV-----GSDLNK---E 251
+ + + G +++ GP+GSGKS+ R L L G I G+ ++LNK E
Sbjct: 42 GINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101
Query: 252 IFYVPQR----PYTAVGTLRDQLIYPL----TSDQEVEPLTHGGMVELLKNVDLEYLLDR 303
+ V QR P+ V L + + P+ ++ E M ELL V L+
Sbjct: 102 VGMVFQRFNLFPHMTV--LNNITLAPMKVRKWPREKAEAK---AM-ELLDKVGLKDKAHA 155
Query: 304 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
YP D LS G+ QR+ +AR +PK + DE TSA
Sbjct: 156 YP--------DSLSGGQAQRVAIARALAMEPKIMLFDEPTSA 189
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 6e-08
Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 35/198 (17%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SD 247
+++++T ++PG + + GP GSGK+++ +L + + G I G+ S
Sbjct: 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSS 426
Query: 248 LNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLK--NVD--LEYLL 301
L I V Q T+++ L Y P +D+E+ E K + D +++L
Sbjct: 427 LRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEI--------KEAAKLTHSDHFIKHLP 478
Query: 302 DRYPPEKEIN-WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-R 359
+ Y E + G++LS G++Q L + R F PK ILDE TS V T E +
Sbjct: 479 EGY--ETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTE----KSIQA 532
Query: 360 AMG------TSCITISHR 371
AM TS I I+HR
Sbjct: 533 AMWKLMEGKTSII-IAHR 549
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 6e-08
Identities = 50/222 (22%), Positives = 84/222 (37%), Gaps = 54/222 (24%)
Query: 182 IEFSGVKVVTPT-GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 239
++F V P NV V + LT + PG + GPNGSGKS++ +L L+ G +
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 240 AKPGVG-SDLN-----KEIFYVPQRPYTAVGTLRDQLIYPLT---SDQEVE--------- 281
G + ++ V Q P + R+ + Y LT + +E+
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAH 136
Query: 282 ----PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 337
G D E G++LS G++Q + +AR KP+
Sbjct: 137 DFISGFPQG--------------YDTEVGET----GNQLSGGQRQAVALARALIRKPRLL 178
Query: 338 ILDECTSAVTTDMEERFCAKV-----RAM---GTSCITISHR 371
ILD TSA+ + +V + + + I+ +
Sbjct: 179 ILDNATSALDAGNQ----LRVQRLLYESPEWASRTVLLITQQ 216
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 8e-08
Identities = 44/208 (21%), Positives = 76/208 (36%), Gaps = 54/208 (25%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 257
++ +++ V G LI GPNGSGKS+L V+ G G + K+I +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN------KDI--TNK 74
Query: 258 RPY--TAVGTLR-----------------------------DQLIYPLTSDQEVEPLTHG 286
P G +R + L Y +E E +
Sbjct: 75 EPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKA 134
Query: 287 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE----C 342
++L+ + L +L DR ELS G+ + + + R PK ++DE
Sbjct: 135 --FKILEFLKLSHLYDRK--------AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 343 TSAVTTDMEERFCAKVRAMGTSCITISH 370
+ D+ +++A G + + I H
Sbjct: 185 APGLAHDIFN-HVLELKAKGITFLIIEH 211
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 34/202 (16%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915
++ + G L+ GPNGSGKS++ V+ G G + ++ I
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDIT------------N 73
Query: 916 QRPY--TCLGTLRD-QIIYPLSREEAELRALK-----LHGKGEKLVDTTNILDSYLKTIL 967
+ P G +R Q + E+ L+ GE +++ ++
Sbjct: 74 KEPAELYHYGIVRTFQTP----QPLKEMTVLENLLIGEICPGESPLNSL-FYKKWIPKEE 128
Query: 968 EGVRLSY-LLEREEVGWDANLNWE-DILSLGEQQRLGMARLFFHKPKFGILDECT---NA 1022
E V ++ +LE + + + LS G+ + + + R PK ++DE
Sbjct: 129 EMVEKAFKILEF--LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 186
Query: 1023 T-SVDVEEQLYRLAKDMGITFV 1043
+ D+ + L K GITF+
Sbjct: 187 GLAHDIFNHVLEL-KAKGITFL 207
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 6e-07
Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 47/237 (19%)
Query: 182 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 238
++ V G ++ N+ L ++ G + I GP+GSGKS++ ++G L G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 239 IAKPGVG-SDL---------NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PL---T 284
+ + +DL +I +V Q+ + LI LT+ + VE PL
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQ-F--------NLIPLLTALENVELPLIFKY 112
Query: 285 HGGM---------VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 335
G M +E LK +LE + P ++LS G+QQR+ +AR + P
Sbjct: 113 RGAMSGEERRKRALECLKMAELEERFANHKP-------NQLSGGQQQRVAIARALANNPP 165
Query: 336 FAILDECT----SAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHD-VVLSLDGE 387
+ D+ T S + + G + + ++H + F + ++ DGE
Sbjct: 166 IILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGE 222
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 33/165 (20%)
Query: 194 GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKE- 251
G + + + LKV G + + G NG+GK++ + GL G I G D+ +
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF--NGQDITNKP 74
Query: 252 --------IFYVPQ--RPYTAVGTLRDQLI---YPLTSDQEVEPLTHGGMVELLKNVDLE 298
I VP+ R + + T+ + L+ Y + ++ DLE
Sbjct: 75 AHVINRMGIALVPEGRRIFPEL-TVYENLMMGAYNRKDKEGIKR-------------DLE 120
Query: 299 YLLDRYP--PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
++ +P E+ G LS GEQQ L + R +PK ++DE
Sbjct: 121 WIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 46/234 (19%), Positives = 73/234 (31%), Gaps = 24/234 (10%)
Query: 141 NRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT----GNV 196
++ Y L K N + E + + +
Sbjct: 390 THITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI 449
Query: 197 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP 256
L+ L+++ I GPNG GKS+L R + V G + YV
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG--QVDGFPTQEEC------RTVYVE 501
Query: 257 QRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDEL 316
GT D + + V E +K+ +E+ I L
Sbjct: 502 HDI---DGTHSDTSVLDFVFESGVGTK------EAIKDKLIEFGFTDEMIAMPI---SAL 549
Query: 317 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISH 370
S G + +L +AR +LDE T+ + T + G + ITISH
Sbjct: 550 SGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 196 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 255
+ ++ + S + + GPNG+GKS+L VL G SG + + I Y+
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT---HENC--RIAYI 741
Query: 256 PQ 257
Q
Sbjct: 742 KQ 743
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 28/172 (16%), Positives = 50/172 (29%), Gaps = 42/172 (24%)
Query: 850 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC 909
K+L + + + + GPNG GKS++ R + Q C
Sbjct: 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------------GQVDGFPTQEEC 495
Query: 910 GIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEG 969
YV ++ L + + ++ +K L
Sbjct: 496 RTVYVEHDI---------------DGTHSDTSVL------DFVFESGVGTKEAIKDKLIE 534
Query: 970 VRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1021
+ + + LS G + +L +AR +LDE TN
Sbjct: 535 FGFTDEMIAMPIS---------ALSGGWKMKLALARAVLRNADILLLDEPTN 577
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 9e-05
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 33/173 (19%)
Query: 196 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG--VGSDLNKEIF 253
VL + ++L+ G + I G +GSGKS+ R + L G I G + +K+
Sbjct: 21 VL-KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 79
Query: 254 YVPQRPYTAVGTLRDQL--------IYP-LTSDQEV--EPLTHGGM---------VELLK 293
+ LR +L ++ +T + V P+ G+ ++ L
Sbjct: 80 LKVADK-NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLA 138
Query: 294 NVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 345
V + E +YP LS G+QQR+ +AR +P + DE TSA
Sbjct: 139 KVGIDERAQGKYP--------VHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 183
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 28/161 (17%)
Query: 194 GNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-VGSDL--- 248
GN + N+ LK++ G + + GP+GSGKS+L + G++ SG I ++L
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK 73
Query: 249 NKEIFYVPQR----PYTAVGTLRDQLIYPL----TSDQEVEPLTHGGMVELLKNVDLEYL 300
++ + V Q P+ V + +PL +E++ E+ K + ++ L
Sbjct: 74 DRNVGLVFQNWALYPHMTV---YKNIAFPLELRKAPREEIDKKVR----EVAKMLHIDKL 126
Query: 301 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
L+RYP +LS G+QQR+ +AR +P+ +LDE
Sbjct: 127 LNRYP--------WQLSGGQQQRVAIARALVKEPEVLLLDE 159
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1075 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 8e-31 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-19 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 6e-30 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-18 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 6e-29 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 4e-19 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 5e-28 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-17 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-27 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-15 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 7e-27 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 7e-19 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 7e-24 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-18 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-23 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 7e-13 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-22 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-12 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-21 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-10 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 5e-21 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 8e-14 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-20 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-12 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-19 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-13 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-11 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-19 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 5e-14 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-19 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-09 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-18 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-11 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-18 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-09 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-17 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-08 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 7e-13 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 6e-09 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-04 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.003 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 119 bits (301), Expect = 8e-31
Identities = 49/219 (22%), Positives = 94/219 (42%), Gaps = 22/219 (10%)
Query: 182 IEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
I+ V + +++ L +E G + G +G GKS+L ++ + + SG I
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 241 KPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT--SDQEVEPLTHGGMVELL 292
G L +I V Q T+++ ++ +D+EV E
Sbjct: 77 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVV--------EAA 128
Query: 293 KNVDLEYLLDRYPP--EKEIN-WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 349
K + + P + E+ G +LS G++QRL +AR+F + P ILDE TSA+ +
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 350 MEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 386
E + + + + ++HR + + D ++ ++
Sbjct: 189 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIEN 227
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 86.0 bits (213), Expect = 4e-19
Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 34/221 (15%)
Query: 834 QDSISFSKLDIITPSQKLLA-RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSG 892
Q I + + + + I G+++ G +G GKS++ ++ + V SG
Sbjct: 14 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 73
Query: 893 SLTKPSQHIDEEAGSGCG--IFYVPQRPYTCLGTLRDQIIY--PLSREEAELRALKLHGK 948
+ +I + I V Q T+++ I+ P + +E + A K+
Sbjct: 74 QILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKM--- 130
Query: 949 GEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGMARLF 1007
+ G+D + + LS G++QRL +AR+F
Sbjct: 131 ---------------------ANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 169
Query: 1008 FHKPKFGILDECTN----ATSVDVEEQLYRLAKDMGITFVT 1044
+ P ILDE T+ + ++E L L+KD V
Sbjct: 170 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVA 210
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 118 bits (296), Expect = 6e-30
Identities = 50/227 (22%), Positives = 91/227 (40%), Gaps = 17/227 (7%)
Query: 162 IEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGK 221
+ +K Q NG R + S+ N + FS + GN +++N+ L +E G L ITG GSGK
Sbjct: 19 LLEKVQQSNGDRKHSSDENNVSFSHL---CLVGNPVLKNINLNIEKGEMLAITGSTGSGK 75
Query: 222 SSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE 281
+SL ++ G G I + + + Q + GT+++ +I+ ++ D+
Sbjct: 76 TSLLMLILGELEASEGIIK-------HSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRY 128
Query: 282 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 341
+ E + LS G++ R+ +AR Y +LD
Sbjct: 129 KSVVKACQLQQDITKFAEQDNTVLGEGGVT----LSGGQRARISLARAVYKDADLYLLDS 184
Query: 342 CTSAVTTDMEERF---CAKVRAMGTSCITISHRPALVAFHDVVLSLD 385
+ EE+ C + I ++ + + D +L L
Sbjct: 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILH 231
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 84.6 bits (209), Expect = 2e-18
Identities = 44/252 (17%), Positives = 93/252 (36%), Gaps = 49/252 (19%)
Query: 805 ELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGK 864
ELL+ Q + + SS ++++SFS L + + + I G+
Sbjct: 15 GFGELLEKVQQSNGDRKHSSD--------ENNVSFSHL---CLVGNPVLKNINLNIEKGE 63
Query: 865 SLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGT 924
L +TG GSGK+S+ ++ G G + + + + Q + GT
Sbjct: 64 MLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR-----------VSFCSQFSWIMPGT 112
Query: 925 LRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWD 984
+++ II+ +S +E ++ +++ +L + + +
Sbjct: 113 IKENIIFGVSYDEYRYKS-----------------------VVKACQLQQDITKFAEQDN 149
Query: 985 ANLNWEDI-LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDM---GI 1040
L + LS G++ R+ +AR + +LD V EEQ++
Sbjct: 150 TVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK 209
Query: 1041 TFVTSSQRPALI 1052
T + + + +
Sbjct: 210 TRILVTSKMEHL 221
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 114 bits (287), Expect = 6e-29
Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 17/216 (7%)
Query: 182 IEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP------L 234
+EF V P V N+ LK+ G + + G +GSGKS++ ++ + L
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 235 VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 294
+ GH + + L ++ V Q + T+ + + Y E + + E +
Sbjct: 74 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYA-----RTEEYSREQIEEAARM 128
Query: 295 VDLEYLLDRYP--PEKEIN-WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 351
+++ + I G LS G++QR+ +AR ILDE TSA+ T+ E
Sbjct: 129 AYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 188
Query: 352 ERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 385
A + + + + I+HR + + D ++ ++
Sbjct: 189 RAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVE 224
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 85.7 bits (212), Expect = 4e-19
Identities = 39/216 (18%), Positives = 82/216 (37%), Gaps = 29/216 (13%)
Query: 837 ISFSKLDIITPSQKLLA-RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 895
+ F + P +++ A R + +I GK++ + G +GSGKS++ ++ + + G +
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 896 KPSQHIDEEAGSGCG--IFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLV 953
+ E + + V Q + T+ + I Y + E + + +
Sbjct: 74 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEE--------- 124
Query: 954 DTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGMARLFFHKPK 1012
+ + + G D + + LS G++QR+ +AR
Sbjct: 125 ------------AARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSP 172
Query: 1013 FGILDECTNA----TSVDVEEQLYRLAKDMGITFVT 1044
ILDE T+A + ++ L L K+ +
Sbjct: 173 ILILDEATSALDTESERAIQAALDELQKNRTSLVIA 208
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 111 bits (279), Expect = 5e-28
Identities = 49/215 (22%), Positives = 96/215 (44%), Gaps = 16/215 (7%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
+ V ++ +++ + +P S + GP+G GKS++F +L + +G I
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 242 PGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 295
G + +I +V Q GT+R+ L Y L D E L +L
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQ-----VLDLA 116
Query: 296 DLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 352
++ P + G+ ++S G++QRL +AR F PK +LDE T+++ ++ E
Sbjct: 117 FARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176
Query: 353 RFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 385
+ ++ G + + I+HR + + D + ++
Sbjct: 177 MVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIE 211
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 81.5 bits (201), Expect = 1e-17
Identities = 51/234 (21%), Positives = 92/234 (39%), Gaps = 26/234 (11%)
Query: 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 896
+S +D + + R ++FE P + GP+G GKS++F +L + +G +T
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 897 PSQHIDEEAGS--GCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVD 954
Q ID + I +V Q GT+R+ + Y L +
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYT---------------- 105
Query: 955 TTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGMARLFFHKPKF 1013
D L +L+ +E + + + +S G++QRL +AR F PK
Sbjct: 106 -----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160
Query: 1014 GILDECTNATSVDVEEQLYRLAKDM--GITFVTSSQRPALIPFHSLELRLIDGE 1065
+LDE T + + E + + + G T + + R + I + G+
Sbjct: 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQ 214
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 110 bits (276), Expect = 1e-27
Identities = 44/214 (20%), Positives = 89/214 (41%), Gaps = 12/214 (5%)
Query: 182 IEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
I F ++ + ++ +N+ L ++ G + I G +GSGKS+L +++ + +G +
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 241 KPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 294
G + L +++ V Q ++ D + + + +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 295 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF 354
+ L G LS G++QR+ +AR + PK I DE TSA+ + E
Sbjct: 122 IS---ELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 355 CAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 386
+ + G + I I+HR + V D ++ ++
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEK 212
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 73.8 bits (181), Expect = 4e-15
Identities = 37/212 (17%), Positives = 76/212 (35%), Gaps = 29/212 (13%)
Query: 847 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDE 903
P ++ + I G+ + + G +GSGKS++ ++++ + +G + D
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 72
Query: 904 EAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYL 963
+ V Q ++ D I + + K D
Sbjct: 73 NWLRRQ-VGVVLQDNVLLNRSIIDNISLAN--PGMSVEKVIYAAKLAGAHD--------- 120
Query: 964 KTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGMARLFFHKPKFGILDECTNA 1022
+ G++ + + LS G++QR+ +AR + PK I DE T+A
Sbjct: 121 -----------FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSA 169
Query: 1023 TSVDVEEQLYRLAKDM--GITFVTSSQRPALI 1052
+ E + R + G T + + R + +
Sbjct: 170 LDYESEHVIMRNMHKICKGRTVIIIAHRLSTV 201
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (271), Expect = 7e-27
Identities = 52/220 (23%), Positives = 92/220 (41%), Gaps = 20/220 (9%)
Query: 182 IEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 239
++F V P ++++ LT + PG + GPNGSGKS++ +L L+ G +
Sbjct: 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 240 AKPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 293
G L++++ V Q P +L++ + Y LT +E +
Sbjct: 72 LLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTME-----EITAAAV 126
Query: 294 NVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAV---- 346
+ P + + +LS G++Q + +AR KP ILD+ TSA+
Sbjct: 127 KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 186
Query: 347 TTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDG 386
+E+ S + I+ +LV D +L L+G
Sbjct: 187 QLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEG 226
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.3 bits (211), Expect = 7e-19
Identities = 51/229 (22%), Positives = 92/229 (40%), Gaps = 32/229 (13%)
Query: 834 QDSISFSKLDIITPSQK--LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVS 891
+ + F + P++ L+ + LTF + PG+ + GPNGSGKS+V +L+ L+
Sbjct: 9 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG 68
Query: 892 GSLT---KPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGK 948
G L KP + + V Q P +L++ I Y L+++
Sbjct: 69 GQLLLDGKPLPQYEHRYLHRQ-VAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITA---- 123
Query: 949 GEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGMARLF 1007
+ G+D ++ LS G++Q + +AR
Sbjct: 124 -----------------AAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166
Query: 1008 FHKPKFGILDECTNA----TSVDVEEQLYRLAKDMGITFVTSSQRPALI 1052
KP ILD+ T+A + + VE+ LY + + + +Q +L+
Sbjct: 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV 215
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 99.5 bits (248), Expect = 7e-24
Identities = 41/213 (19%), Positives = 80/213 (37%), Gaps = 36/213 (16%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
++ + V L L ++ G L++ GP+G GK++ R++ GL G I
Sbjct: 7 VKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 65
Query: 242 PGV----GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGM-------- 288
++ I V Q + +T + + PL
Sbjct: 66 GDRDVTYLPPKDRNISMVFQSY---------AVWPHMTVYENIAFPLKIKKFPKDEIDKR 116
Query: 289 -VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 347
+ + +E LL+RYP +LS G++QR+ +AR +P ++DE S +
Sbjct: 117 VRWAAELLQIEELLNRYP--------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 168
Query: 348 TDMEERFCAKVRAM----GTSCITISHRPALVA 376
+ A+++ + + I ++H
Sbjct: 169 AKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAM 201
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 82.5 bits (204), Expect = 4e-18
Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 43/210 (20%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913
+L I G+ L++ GP+G GK++ R++ GL G + + + I
Sbjct: 23 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 82
Query: 914 VPQRPYTCLG-TLRDQIIYPL-----SREEAELRALKLHGKGEKLVDTTNILDSYLKTIL 967
V Q T+ + I +PL ++E + R +L+ +L+ Y
Sbjct: 83 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA----ELLQIEELLNRYPAQ-- 136
Query: 968 EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA----T 1023
LS G++QR+ +AR +P ++DE +
Sbjct: 137 -------------------------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL 171
Query: 1024 SVDVEEQLYRLAKDMGIT--FVTSSQRPAL 1051
V + ++ +L + + +T +VT Q A+
Sbjct: 172 RVAMRAEIKKLQQKLKVTTIYVTHDQVEAM 201
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 98.4 bits (245), Expect = 1e-23
Identities = 57/229 (24%), Positives = 89/229 (38%), Gaps = 35/229 (15%)
Query: 182 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 238
I+ S + V G ++ N++L V G + G +G+GKS+L R + L G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 239 I---------AKPGVGSDLNKEIFYVPQRP-----YTAVGTLRDQLIYPLTSDQEVEPLT 284
+ + ++I + Q T G + L T EV+
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 285 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 344
ELL V L D YP LS G++QR+ +AR PK + DE TS
Sbjct: 122 T----ELLSLVGLGDKHDSYP--------SNLSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 345 AV----TTDMEERFCAKVRAMGTSCITISHRPALVAF--HDVVLSLDGE 387
A+ T + E R +G + + I+H +V V + +GE
Sbjct: 170 ALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE 218
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 67.2 bits (164), Expect = 7e-13
Identities = 40/206 (19%), Positives = 74/206 (35%), Gaps = 48/206 (23%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS-------LTKPSQHIDEEAG 906
++ + G+ V G +G+GKS++ R + L GS LT S+ +A
Sbjct: 22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81
Query: 907 SGCGIFYVPQRPYTCLGTLRDQIIYPL-----SREEAELRALKLHGKGEKLVDTTNILDS 961
G+ + + T+ + PL ++E + R +L
Sbjct: 82 RQIGMIFQHFNLLSS-RTVFGNVALPLELDNTPKDEVKRRVTEL---------------- 124
Query: 962 YLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN 1021
L V L + + LS G++QR+ +AR PK + DE T+
Sbjct: 125 -----LSLVGLGDKHDS----------YPSNLSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 1022 ATSVDVEEQL----YRLAKDMGITFV 1043
A + + + +G+T +
Sbjct: 170 ALDPATTRSILELLKDINRRLGLTIL 195
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 95.3 bits (237), Expect = 3e-22
Identities = 47/231 (20%), Positives = 80/231 (34%), Gaps = 52/231 (22%)
Query: 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 239
N + + VL + ++L+ G + I G +GSGKS+ R + L G I
Sbjct: 1 NKLHVIDLHKRYGGHEVL-KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 240 -------------------AKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV 280
A L + V Q L +T + V
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHF---------NLWSHMTVLENV 110
Query: 281 --EPLTHGGM---------VELLKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMAR 328
P+ G+ ++ L V + E +YP LS G+QQR+ +AR
Sbjct: 111 MEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP--------VHLSGGQQQRVSIAR 162
Query: 329 LFYHKPKFAILDECTSAVTTDMEE---RFCAKVRAMGTSCITISHRPALVA 376
+P + DE TSA+ ++ R ++ G + + ++H
Sbjct: 163 ALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFAR 213
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 66.4 bits (162), Expect = 2e-12
Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 59/226 (26%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC---- 909
+ ++ + G + + G +GSGKS+ R + L G++ Q+I+
Sbjct: 19 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78
Query: 910 -----------GIFYVPQRP--YTCLGTLRDQIIYP------LSREEAELRALKLHGKGE 950
+ V Q ++ + T+ + ++ LS+ +A RALK
Sbjct: 79 ADKNQLRLLRTRLTMVFQHFNLWSHM-TVLENVMEAPIQVLGLSKHDARERALKY----- 132
Query: 951 KLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHK 1010
L V + + + LS G+QQR+ +AR +
Sbjct: 133 ----------------LAKVGIDERAQGKYPVH---------LSGGQQQRVSIARALAME 167
Query: 1011 PKFGILDECTNATSVDVEEQL---YRLAKDMGIT--FVTSSQRPAL 1051
P + DE T+A ++ ++ + + G T VT A
Sbjct: 168 PDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFAR 213
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 91.7 bits (227), Expect = 4e-21
Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 25/223 (11%)
Query: 182 IEFSGVKVVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240
I V V G V+ ++N+ + +E G I GP+G+GK++ R++ GL +G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 241 KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS-DQEVEPLTHGGM---------VE 290
N ++ P+ + L LT+ + PLT+ M E
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 291 LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV---- 346
+ K +D+ ++L+ +P ELS +QQR+ +AR P +LDE S +
Sbjct: 124 VAKILDIHHVLNHFP--------RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 347 TTDMEERFCAKVRAMGTSCITISHRPALVAF--HDVVLSLDGE 387
+G + + +SH PA + V + + G+
Sbjct: 176 RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGK 218
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 58.6 bits (141), Expect = 6e-10
Identities = 37/227 (16%), Positives = 75/227 (33%), Gaps = 37/227 (16%)
Query: 837 ISFSKLDIITPSQKLLA-RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 895
I + + K++A + I G+ + GP+G+GK++ R++ GL +G L
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 896 KPSQHIDEEAGSGC-----GIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGE 950
+ + I V Q L+ E L +
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALY---------PNLTAFENIAFPLTNMKMSK 114
Query: 951 KLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHK 1010
+ + R+ + + ++ N ++ LS +QQR+ +AR
Sbjct: 115 EEIRK---------------RVEEVAKILDIHHVLN-HFPRELSGAQQQRVALARALVKD 158
Query: 1011 PKFGILDECTNATSVDVEEQL----YRLAKDMGIT--FVTSSQRPAL 1051
P +LDE + + + + +G+T V+
Sbjct: 159 PSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIF 205
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 91.1 bits (226), Expect = 5e-21
Identities = 45/231 (19%), Positives = 87/231 (37%), Gaps = 40/231 (17%)
Query: 182 IEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 238
I+ V G ++N+ L ++ G + I GP+GSGKS++ ++G L G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 239 I----------AKPGVGSDLNKEIFYVPQRPY-TAVGTLRDQLIYPLT---------SDQ 278
+ + +I +V Q+ + T + + PL ++
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 279 EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 338
L M EL E + P ++LS G+QQR+ +AR + P +
Sbjct: 122 RKRALECLKMAEL-----EERFANHKP--------NQLSGGQQQRVAIARALANNPPIIL 168
Query: 339 LDECTSAV----TTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLD 385
D+ T A+ + + G + + ++H + F + ++ L
Sbjct: 169 ADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLK 219
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 69.9 bits (171), Expect = 8e-14
Identities = 45/209 (21%), Positives = 78/209 (37%), Gaps = 49/209 (23%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEA---GS 907
+ + I G+ + + GP+GSGKS++ ++ L G + + +D++
Sbjct: 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81
Query: 908 GCGIFYVPQRPY-TCLGTLRDQIIYPL--------SREEAELRALKLHGKGEKLVDTTNI 958
I +V Q+ L T + + PL S EE RAL+ E
Sbjct: 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE-------- 133
Query: 959 LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1018
+ E + LS G+QQR+ +AR + P + D+
Sbjct: 134 -------LEERFANHKPNQ---------------LSGGQQQRVAIARALANNPPIILADQ 171
Query: 1019 CTNA----TSVDVEEQLYRLAKDMGITFV 1043
T A T + + L +L ++ G T V
Sbjct: 172 PTGALDSKTGEKIMQLLKKLNEEDGKTVV 200
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 88.1 bits (218), Expect = 6e-20
Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 22/185 (11%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-----DL 248
+++ ++ ++E G + GPNG+GK++ R++ L SG + G ++
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEV 73
Query: 249 NKEIFYVPQRP-----YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 303
K I Y+P+ + LR + +S E+E + + L +
Sbjct: 74 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE----RATEIAGLGEKIKD 129
Query: 304 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 363
S G ++L +AR P+ AILDE TS + ++
Sbjct: 130 RV--------STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 181
Query: 364 SCITI 368
+TI
Sbjct: 182 EGLTI 186
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 66.6 bits (162), Expect = 1e-12
Identities = 37/204 (18%), Positives = 74/204 (36%), Gaps = 31/204 (15%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT-KPSQHIDEEAGSGCGIF 912
+ ++FEI G+ + GPNG+GK++ R++ L SG +T ++E I
Sbjct: 19 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 78
Query: 913 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 972
Y+P+ + E + ++ ++ E L
Sbjct: 79 YLPEEAGAYRN---------MQGIEYLRFVAGFYASSSS------EIEEMVERATEIAGL 123
Query: 973 SYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSV----DVE 1028
++ S G ++L +AR P+ ILDE T+ V +V
Sbjct: 124 GEKIKD----------RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 173
Query: 1029 EQLYRLAKD-MGITFVTSSQRPAL 1051
+ L + +++ + I + +
Sbjct: 174 KILKQASQEGLTILVSSHNMLEVE 197
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 87.7 bits (217), Expect = 1e-19
Identities = 43/207 (20%), Positives = 74/207 (35%), Gaps = 32/207 (15%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD------ 247
++ +++ V G LI GPNGSGKS+L V+ G G +
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 75
Query: 248 -LNKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGG-------------MVELL 292
+ I Q P T+ + L+ E + ++L
Sbjct: 76 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 135
Query: 293 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV---TTD 349
+ + L +L DR ELS G+ + + + R PK ++DE + V
Sbjct: 136 EFLKLSHLYDRKA--------GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 187
Query: 350 MEERFCAKVRAMGTSCITISHRPALVA 376
+++A G + + I HR +V
Sbjct: 188 DIFNHVLELKAKGITFLIIEHRLDIVL 214
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 69.6 bits (170), Expect = 1e-13
Identities = 36/208 (17%), Positives = 72/208 (34%), Gaps = 24/208 (11%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT---KPSQHIDEEAGSGCG 910
++ + G L+ GPNGSGKS++ V+ G G + K + + G
Sbjct: 21 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80
Query: 911 IFYVPQRPYTCLG-TLRDQIIYP-LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 968
I Q P T+ + ++ + E+ L +L K +
Sbjct: 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE----------- 129
Query: 969 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVE 1028
+ +LE ++ + + LS G+ + + + R PK ++DE + +
Sbjct: 130 --KAFKILEFLKLSHLYDRKAGE-LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA 186
Query: 1029 EQLYRL-----AKDMGITFVTSSQRPAL 1051
++ AK + + L
Sbjct: 187 HDIFNHVLELKAKGITFLIIEHRLDIVL 214
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 86.9 bits (215), Expect = 1e-19
Identities = 45/207 (21%), Positives = 82/207 (39%), Gaps = 25/207 (12%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 257
V ++L+V+ G +++ GP+G GK++ R++ GL G I ++ +VP
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 258 RPYTAVGTLRDQLIYP--LTSDQEVEPLTHGGM---------VELLKNVDLEYLLDRYPP 306
+ + +YP D PL + E+ + + L LL+R P
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP- 137
Query: 307 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS----AVTTDMEERFCAKVRAMG 362
ELS G++QR+ + R KP+ ++DE S + M R +G
Sbjct: 138 -------RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190
Query: 363 TSCITISHRPALVAF--HDVVLSLDGE 387
+ I ++H + + G
Sbjct: 191 VTTIYVTHDQVEAMTMGDRIAVMNRGV 217
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 63.8 bits (155), Expect = 1e-11
Identities = 45/204 (22%), Positives = 90/204 (44%), Gaps = 25/204 (12%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913
R+++ E+ G+ +++ GP+G GK++ R++ GL G + + + A GIF
Sbjct: 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLV---ADPEKGIFV 76
Query: 914 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 973
P+ + + ++ + LKL + + D ++ + E + L+
Sbjct: 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEI------DQRVREVAELLGLT 130
Query: 974 YLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN----ATSVDVEE 1029
LL R LS G++QR+ + R KP+ ++DE + V +
Sbjct: 131 ELLNR----------KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA 180
Query: 1030 QLYRLAKDMGIT--FVTSSQRPAL 1051
+L +L + +G+T +VT Q A+
Sbjct: 181 ELKKLQRQLGVTTIYVTHDQVEAM 204
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 85.4 bits (211), Expect = 2e-19
Identities = 35/195 (17%), Positives = 79/195 (40%), Gaps = 19/195 (9%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
+E + V ++E +T+ +E G+ + GPNG GK++L + + + G I
Sbjct: 3 LEIRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 60
Query: 242 PGV-GSDLNKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 299
GV + + +IF++P+ ++ D L + + +++ L++V++
Sbjct: 61 NGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG--VKVNKNEIMDALESVEVLD 118
Query: 300 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEERFC 355
L + LS G +R+ +A + +LD+ A+ + +
Sbjct: 119 LKKKLGE---------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSIL 169
Query: 356 AKVRAMGTSCITISH 370
++ G I+
Sbjct: 170 EILKEKGIVIISSRE 184
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 69.6 bits (170), Expect = 5e-14
Identities = 35/198 (17%), Positives = 68/198 (34%), Gaps = 35/198 (17%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913
++T I G + GPNG GK+++ + + + G + I + G IF+
Sbjct: 18 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKG---KIFF 74
Query: 914 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 973
+P+ +S E+ L+G + + L
Sbjct: 75 LPEEIIVP---------RKISVEDYLKAVASLYGVKVNKNEIMDAL-------------- 111
Query: 974 YLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA----TSVDVEE 1029
E V LS G +R+ +A + +LD+ A + V +
Sbjct: 112 -----ESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK 166
Query: 1030 QLYRLAKDMGITFVTSSQ 1047
+ + K+ GI ++S +
Sbjct: 167 SILEILKEKGIVIISSRE 184
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 85.8 bits (212), Expect = 3e-19
Identities = 40/205 (19%), Positives = 75/205 (36%), Gaps = 28/205 (13%)
Query: 198 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGSDLNKEI 252
+ L+ +V G L + GPNG+GKS+L + G+ +G + + L
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR 74
Query: 253 FYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINW 312
Y+ Q+ T + D+ L + ++ + L+ L R
Sbjct: 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN----DVAGALALDDKLGRST------- 123
Query: 313 GDELSLGEQQRLGMARLFYH-------KPKFAILDECTSAVTTDMEERFCAKVRAM---G 362
++LS GE QR+ +A + + +LDE +++ + + A+ G
Sbjct: 124 -NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQG 182
Query: 363 TSCITISHRPALVAFH-DVVLSLDG 386
+ + SH H L G
Sbjct: 183 LAIVMSSHDLNHTLRHAHRAWLLKG 207
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 57.3 bits (138), Expect = 2e-09
Identities = 41/207 (19%), Positives = 71/207 (34%), Gaps = 39/207 (18%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915
L+ E+ G+ L + GPNG+GKS++ + G+ GS+ Q ++ +
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEA---------WSA 67
Query: 916 QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL 975
+ L Q P + L H K + + + L
Sbjct: 68 TKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELL---------NDVAGALALDDK 118
Query: 976 LEREEVGWDANLNWEDILSLGEQQRLGMARLFFH-------KPKFGILDECTNATSVDVE 1028
L R + LS GE QR+ +A + + +LDE N+ V +
Sbjct: 119 LGRS----------TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQ 168
Query: 1029 EQLYRLAKDM---GITFVTSSQRPALI 1052
L ++ + G+ V SS
Sbjct: 169 SALDKILSALCQQGLAIVMSSHDLNHT 195
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 83.8 bits (207), Expect = 1e-18
Identities = 42/217 (19%), Positives = 87/217 (40%), Gaps = 20/217 (9%)
Query: 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241
++ V V +++ L + G ++ GP+G GKS+L R++ GL + SG +
Sbjct: 1 VQLQNVTKAWGEVVVS-KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 59
Query: 242 PGVG----SDLNKEIFYVPQRPY-TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD 296
+ + V Q ++ + + + L + + + + ++ + +
Sbjct: 60 GEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ 119
Query: 297 LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE----CTSAVTTDMEE 352
L +LLDR P LS G++QR+ + R +P +LDE +A+ M
Sbjct: 120 LAHLLDRKP--------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 171
Query: 353 RFCAKVRAMGTSCITISHRPALVAF--HDVVLSLDGE 387
+ +G + I ++H +V+ G
Sbjct: 172 EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 208
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 63.4 bits (154), Expect = 1e-11
Identities = 44/210 (20%), Positives = 87/210 (41%), Gaps = 43/210 (20%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913
+ + +I G+ ++ GP+G GKS++ R++ GL + SG L + +++ + G+
Sbjct: 17 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 76
Query: 914 VPQRPYTCLG-TLRDQIIYPL-----SREEAELRALKLHGKGEKLVDTTNILDSYLKTIL 967
V Q ++ + + + L +E R ++ +++ ++LD K
Sbjct: 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQV----AEVLQLAHLLDRKPKA-- 130
Query: 968 EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE----CTNAT 1023
LS G++QR+ + R +P +LDE A
Sbjct: 131 -------------------------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 165
Query: 1024 SVDVEEQLYRLAKDMGIT--FVTSSQRPAL 1051
V + ++ RL K +G T +VT Q A+
Sbjct: 166 RVQMRIEISRLHKRLGRTMIYVTHDQVEAM 195
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 82.3 bits (203), Expect = 5e-18
Identities = 36/194 (18%), Positives = 65/194 (33%), Gaps = 19/194 (9%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI--------AKPGVG 245
++ + LKV G + + G NG+GK++ + GL G I KP
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 246 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 305
+ R T+ + L+ + ++ E + L+ L +
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 306 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV---TTDMEERFCAKVRAMG 362
LS GEQQ L + R +PK ++DE + + K+ G
Sbjct: 138 --------GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG 189
Query: 363 TSCITISHRPALVA 376
T+ + +
Sbjct: 190 TTILLVEQNALGAL 203
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 57.2 bits (138), Expect = 2e-09
Identities = 35/208 (16%), Positives = 70/208 (33%), Gaps = 37/208 (17%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT-----KPSQHIDEEAGSG 908
+ + ++ G+ + + G NG+GK++ + GL G + ++ G
Sbjct: 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82
Query: 909 CGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 968
+ +R + L + ++ +R++ E L L T
Sbjct: 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGT--- 139
Query: 969 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA----TS 1024
LS GEQQ L + R +PK ++DE +
Sbjct: 140 ------------------------LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILV 175
Query: 1025 VDVEEQLYRLAKD-MGITFVTSSQRPAL 1051
+V E + ++ ++ I V + AL
Sbjct: 176 SEVFEVIQKINQEGTTILLVEQNALGAL 203
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 79.3 bits (195), Expect = 4e-17
Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 24/194 (12%)
Query: 194 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 253
N ++NL+LKVE G +I GP G+GK+ ++ G SG I G
Sbjct: 12 KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDG-----KDVTD 66
Query: 254 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV-------ELLKNVDLEYLLDRYPP 306
P++ A L + + +E + + +++ +E+LLDR P
Sbjct: 67 LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL 126
Query: 307 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEERFCAKVRAMG 362
LS GEQQR+ +AR PK +LDE SA+ + E +
Sbjct: 127 --------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK 178
Query: 363 TSCITISHRPALVA 376
+ + I+H
Sbjct: 179 LTVLHITHDQTEAR 192
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 54.7 bits (131), Expect = 1e-08
Identities = 36/203 (17%), Positives = 73/203 (35%), Gaps = 32/203 (15%)
Query: 854 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913
L+ ++ G+ ++ GP G+GK+ ++ G SG + + + + + I +
Sbjct: 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAF 76
Query: 914 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLS 973
V Q + ++ ++ +++ + R+
Sbjct: 77 VYQNY---------SLFPHMNVKKNLEFGMRMKKIKDP------------------KRVL 109
Query: 974 YLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA----TSVDVEE 1029
++ + N LS GEQQR+ +AR PK +LDE +A T + E
Sbjct: 110 DTARDLKIEHLLDRNPLT-LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE 168
Query: 1030 QLYRLAKDMGITFVTSSQRPALI 1052
L L K +T + +
Sbjct: 169 MLSVLHKKNKLTVLHITHDQTEA 191
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 67.3 bits (164), Expect = 7e-13
Identities = 44/199 (22%), Positives = 77/199 (38%), Gaps = 22/199 (11%)
Query: 200 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYV 255
N+ ++ ++ GP G+GKS ++ G+ G + G + I +V
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 256 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV-ELLKNVDLEYLLDRYPPEKEINWGD 314
PQ A+ + VE + V E+ + + + +LLDR P
Sbjct: 76 PQ--DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP--------A 125
Query: 315 ELSLGEQQRLGMARLFYHKPKFAILDECTS----AVTTDMEERFCAKVRAMGTSCITISH 370
LS GE+QR+ +AR +P+ +LDE S + E R + ++H
Sbjct: 126 RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH 185
Query: 371 RPALVAF--HDVVLSLDGE 387
A +V + L+G
Sbjct: 186 DLIEAAMLADEVAVMLNGR 204
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 55.4 bits (133), Expect = 6e-09
Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 40/205 (19%)
Query: 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915
+ FE + ++ GP G+GKS ++ G+ G + I GI +VP
Sbjct: 18 VDFE-MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76
Query: 916 QR----PYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR 971
Q P+ + + + R E + R ++ + + ++LD
Sbjct: 77 QDYALFPHLSVYRNIAYGLRNVERVERDRRVREMA----EKLGIAHLLDRKPAR------ 126
Query: 972 LSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE----CTNATSVDV 1027
LS GE+QR+ +AR +P+ +LDE T +
Sbjct: 127 ---------------------LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVL 165
Query: 1028 EEQLYRLAKDMGITFVTSSQRPALI 1052
E+L + ++ + + +
Sbjct: 166 MEELRFVQREFDVPILHVTHDLIEA 190
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 56.5 bits (135), Expect = 1e-09
Identities = 18/178 (10%), Positives = 43/178 (24%), Gaps = 28/178 (15%)
Query: 211 LLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQL 270
++ITG G GK++L + + + V T +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVR----------------DPETKKRTG 46
Query: 271 IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 330
+T++ + + + ++ E
Sbjct: 47 FRIITTEGKKKIFSSKFFTSKKLVGSYG--VNVQYF--------EELAIPILERAYREAK 96
Query: 331 YHKPKFAILDECTSAVTTDMEERFCAK--VRAMGTSCITISHRPALVAFHDVVLSLDG 386
+ K I+DE + R + + + + + + L G
Sbjct: 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPG 154
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1075 | |||
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.97 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.97 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.66 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.62 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.36 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.32 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.16 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.16 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.76 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.75 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.63 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.42 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.21 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 98.05 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 97.92 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 97.57 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.07 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.99 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.62 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.44 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.18 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.14 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.06 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.97 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.86 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.82 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.71 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.64 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.44 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.41 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.39 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.36 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.15 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.13 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.11 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.09 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 94.92 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.86 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.85 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.81 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.79 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.73 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.67 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.67 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.66 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.62 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 94.56 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.5 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.45 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.4 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.35 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.25 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.21 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.18 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.15 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.1 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.08 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.04 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.0 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.95 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.93 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.86 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.84 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.8 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.79 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.79 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.79 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 93.75 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 93.73 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 93.55 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.48 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.4 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.36 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.32 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.29 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 93.25 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.25 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.23 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 93.21 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.15 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.13 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.11 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.11 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 93.1 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.09 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.05 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.02 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 92.94 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.9 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.87 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 92.85 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 92.8 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.77 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 92.7 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.63 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 92.62 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.6 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.51 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.51 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 92.46 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 92.34 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.29 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 92.27 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.14 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.13 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.12 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 92.12 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.1 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.07 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.06 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.04 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 91.96 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.92 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 91.87 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.87 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.73 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 91.71 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 91.66 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 91.64 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.57 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.55 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.51 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 91.48 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 91.45 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 91.4 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 91.4 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.29 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.25 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.21 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.21 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 91.17 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.16 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 91.15 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 91.13 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.12 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 91.1 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 91.08 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.07 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 91.06 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.02 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.99 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 90.95 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.94 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 90.91 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 90.88 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 90.86 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.82 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.81 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 90.81 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 90.77 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 90.73 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 90.71 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 90.7 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 90.64 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 90.63 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 90.56 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 90.52 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.52 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.48 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 90.45 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.44 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.38 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 90.35 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 90.33 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 90.33 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.32 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.3 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 90.27 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.2 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.17 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 90.17 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.14 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.11 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 90.05 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 90.04 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 90.02 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 90.0 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 90.0 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.99 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.97 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 89.9 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 89.89 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 89.86 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.83 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 89.78 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 89.77 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 89.77 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 89.75 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 89.72 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 89.71 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 89.7 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.69 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.61 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.56 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 89.56 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 89.53 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 89.52 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 89.51 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 89.46 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.44 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 89.38 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 89.34 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 89.29 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 89.28 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.26 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 89.25 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.2 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 89.18 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 89.16 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 89.08 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.03 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 89.02 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 89.0 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 88.9 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 88.9 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 88.89 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.88 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 88.88 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 88.82 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 88.82 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 88.8 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 88.67 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 88.64 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.63 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 88.59 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 88.52 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 88.43 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.39 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 88.38 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.37 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.35 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 88.35 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 88.31 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 88.26 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 88.25 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 88.18 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.17 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.14 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 88.12 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 88.12 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 88.08 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 88.07 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 88.05 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 87.97 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 87.9 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 87.88 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 87.88 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 87.87 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 87.82 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 87.76 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 87.73 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 87.69 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 87.67 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 87.58 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 87.54 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.49 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 87.48 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 87.47 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 87.4 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 87.27 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 87.27 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 87.19 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 87.19 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 87.17 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.07 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 87.0 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 86.97 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 86.92 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.89 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 86.84 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 86.84 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 86.81 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 86.74 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 86.68 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 86.68 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 86.67 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 86.52 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 86.5 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 86.49 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 86.37 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 86.34 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 86.24 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 86.2 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 86.18 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 86.18 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 86.18 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.07 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 86.0 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 85.99 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 85.98 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 85.97 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 85.89 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 85.87 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 85.85 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 85.82 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 85.81 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 85.78 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 85.77 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 85.71 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 85.68 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 85.61 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 85.56 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 85.55 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.54 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 85.53 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 85.47 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 85.47 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 85.42 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 85.35 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 85.33 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 85.21 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 85.15 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 85.15 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 85.14 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 85.12 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 85.08 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 85.03 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 85.0 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 84.88 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 84.83 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 84.77 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 84.75 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 84.72 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 84.72 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 84.69 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 84.64 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 84.61 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 84.61 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 84.52 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 84.48 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 84.43 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 84.43 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 84.42 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 84.36 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 84.32 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 84.3 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 84.28 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 84.26 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 84.19 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 84.17 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 83.92 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 83.92 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 83.81 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 83.65 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 83.62 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 83.59 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 83.39 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 83.27 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 83.26 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.23 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 83.16 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 83.09 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 83.09 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.03 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 82.85 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 82.75 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 82.75 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 82.73 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 82.65 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 82.6 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 82.49 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 82.47 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 82.35 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 82.29 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 82.27 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 82.21 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 82.15 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 82.12 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 82.02 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 81.91 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 81.88 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 81.58 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 81.52 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 81.39 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 81.3 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 81.24 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 81.23 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 81.23 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 81.22 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 81.07 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 80.87 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 80.84 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 80.59 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 80.57 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 80.57 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 80.51 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 80.46 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 80.45 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 80.45 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 80.33 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 80.26 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 80.1 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=406.34 Aligned_cols=211 Identities=20% Similarity=0.276 Sum_probs=188.3
Q ss_pred CCCCEEEEEEEEECCCC-CCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCC--CCCCC
Q ss_conf 89953881005637985-3323234236508986999849999588999999289999988276489877534--58867
Q 001446 833 YQDSISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGC 909 (1075)
Q Consensus 833 ~~g~I~f~~Vsf~yp~~-~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~--~~~r~ 909 (1075)
..|.|+|+||+|.||+. +++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|++.+ ..+|.
T Consensus 13 ~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~ 92 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 92 (255)
T ss_dssp CSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHHH
T ss_conf 78879999889995999976064438998399899998899980999999997127863000153998753078888634
Q ss_pred CEEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCC-C
Q ss_conf 279970899889753656432899747899999663178865334454666899999976793123331003775556-6
Q 001446 910 GIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-N 988 (1075)
Q Consensus 910 ~i~~VpQdp~LF~GTIr~NL~yp~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~-~ 988 (1075)
++++|||+|++|+||||+||.++... ..++++..+++.+++..++..+|.|+|+.+ +
T Consensus 93 ~i~~v~Q~~~lf~~Ti~eNi~~g~~~----------------------~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~ 150 (255)
T d2hyda1 93 QIGLVQQDNILFSDTVKENILLGRPT----------------------ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE 150 (255)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCSS----------------------CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EEEEEECCCCCCCCCHHHHHHCCCCC----------------------CCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCC
T ss_conf 14565101568998799998515867----------------------99999999999969799997362420103338
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEECCCCCCHHHCCCEEEEECCC
Q ss_conf 4337993688799999975407978676156889998899999999873--4966999437989530012138987388
Q 001446 989 WEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 989 ~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~~e~~i~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~~~~g~ 1065 (1075)
.|.+||||||||+||||||+++|+|+|||||||+||++++..+.+.+.. +++|+|+|+||++.+...|+++.+.+|+
T Consensus 151 ~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~ 229 (255)
T d2hyda1 151 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGH 229 (255)
T ss_dssp GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTE
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCE
T ss_conf 8898499999999999998559989998376544797799999999998753888999968999998599999998999
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=402.48 Aligned_cols=208 Identities=17% Similarity=0.219 Sum_probs=180.7
Q ss_pred CEEEEEEEEECCC-CCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCC--CCCCCCEE
Q ss_conf 5388100563798-53323234236508986999849999588999999289999988276489877534--58867279
Q 001446 836 SISFSKLDIITPS-QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIF 912 (1075)
Q Consensus 836 ~I~f~~Vsf~yp~-~~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~--~~~r~~i~ 912 (1075)
+|+|+||+|.||+ .+++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|++.+ ..+|.+++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCC-CCCC
Q ss_conf 970899889753656432899747899999663178865334454666899999976793123331003775556-6433
Q 001446 913 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWED 991 (1075)
Q Consensus 913 ~VpQdp~LF~GTIr~NL~yp~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~-~~g~ 991 (1075)
+|||+|++|+|||++||.++... ..++++..+++.+++..++...|.|+++.+ ..|.
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~----------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~ 138 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPG----------------------MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 138 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTT----------------------CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTT
T ss_pred EEECCCCCCCCCCCCCCCCCCCC----------------------CCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC
T ss_conf 98244655784000352235755----------------------43888999999975578887632013443278788
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEECCCCCCHHHCCCEEEEECCC
Q ss_conf 7993688799999975407978676156889998899999999873--4966999437989530012138987388
Q 001446 992 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 992 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~~e~~i~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~~~~g~ 1065 (1075)
+||||||||+|||||++++|+|+|||||||+||+.+++.+.+.+++ +++|+|+|+||++.++..|+++++.+|.
T Consensus 139 ~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~ 214 (241)
T d2pmka1 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGK 214 (241)
T ss_dssp CCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCE
T ss_conf 6698898987544344416513556477655598999999999999858998999978899998499999998999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=394.45 Aligned_cols=212 Identities=19% Similarity=0.266 Sum_probs=186.3
Q ss_pred CCCCEEEEEEEEECCCC-CCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC--CCCC
Q ss_conf 89953881005637985-33232342365089869998499995889999992899999882764898775345--8867
Q 001446 833 YQDSISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGC 909 (1075)
Q Consensus 833 ~~g~I~f~~Vsf~yp~~-~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~--~~r~ 909 (1075)
..|.|+|+||+|.||+. .++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|.+||.|++.++ .+|.
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CEEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCC-C
Q ss_conf 279970899889753656432899747899999663178865334454666899999976793123331003775556-6
Q 001446 910 GIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-N 988 (1075)
Q Consensus 910 ~i~~VpQdp~LF~GTIr~NL~yp~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~-~ 988 (1075)
++++|||+|++|++|+++|+.++... ...++++..+++.+++.++++.+|.|+++.+ .
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~---------------------~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~ 148 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTE---------------------EYSREQIEEAARMAYAMDFINKMDNGLDTIIGE 148 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTS---------------------CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCT
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCC---------------------CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCC
T ss_conf 68799502544786202433205722---------------------089999999999981799997355441014348
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEECCCCCCHHHCCCEEEEECCC
Q ss_conf 4337993688799999975407978676156889998899999999873--4966999437989530012138987388
Q 001446 989 WEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 989 ~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~~e~~i~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~~~~g~ 1065 (1075)
.+.+||||||||+||||||+++|+|||||||||+||++++..|.+.+++ +++|+|+|+||++.+...|+++++.+|.
T Consensus 149 ~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~ 227 (253)
T d3b60a1 149 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGI 227 (253)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTE
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCE
T ss_conf 8898499999999999999549988995164445898899999999987522788999988799998599999998999
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=398.69 Aligned_cols=208 Identities=25% Similarity=0.355 Sum_probs=180.2
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCC--CCCCCCEEEE
Q ss_conf 38810056379853323234236508986999849999588999999289999988276489877534--5886727997
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE--AGSGCGIFYV 914 (1075)
Q Consensus 837 I~f~~Vsf~yp~~~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~--~~~r~~i~~V 914 (1075)
|+++||+|+||+.+++|+|+||+|+|||++|||||||||||||+++|.|+++|++|+|.+||.|++.+ ..+|.+|++|
T Consensus 2 le~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 81 (242)
T d1mv5a_ 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (242)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEEE
T ss_conf 79998899879998414225899859999999999999799999999996098987798899884424678887436797
Q ss_pred CCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCC-CCCCCC
Q ss_conf 0899889753656432899747899999663178865334454666899999976793123331003775556-643379
Q 001446 915 PQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDIL 993 (1075)
Q Consensus 915 pQdp~LF~GTIr~NL~yp~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~-~~g~~L 993 (1075)
||+|++|+||+|+|+.++... ...+..++.+++.+++..++...|.|+++.+ +.|.+|
T Consensus 82 ~Q~~~lf~~ti~eNi~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~L 140 (242)
T d1mv5a_ 82 SQDSAIMAGTIRENLTYGLEG---------------------DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKI 140 (242)
T ss_dssp CCSSCCCCEEHHHHTTSCTTS---------------------CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCC
T ss_pred CCCCCCCCCCHHHHEECCCCC---------------------CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 566545785345430124455---------------------54235677899999755542037421015236878987
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEECCCCCCHHHCCCEEEEECCC
Q ss_conf 93688799999975407978676156889998899999999873--4966999437989530012138987388
Q 001446 994 SLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 994 SgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~~e~~i~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~~~~g~ 1065 (1075)
|||||||+||||||+++|+|||||||||+||++++..+.+.+++ +++|+|+|+||++.+...|+++++.+|.
T Consensus 141 SGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~ 214 (242)
T d1mv5a_ 141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQ 214 (242)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCE
T ss_conf 99999999999998529989996588655698899999887888717998999978799998499999998999
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=392.71 Aligned_cols=209 Identities=25% Similarity=0.330 Sum_probs=181.3
Q ss_pred CCCCEEEEEEEEECCCC--CCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC--CCC
Q ss_conf 89953881005637985--33232342365089869998499995889999992899999882764898775345--886
Q 001446 833 YQDSISFSKLDIITPSQ--KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSG 908 (1075)
Q Consensus 833 ~~g~I~f~~Vsf~yp~~--~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~--~~r 908 (1075)
..|.|+|+||+|.||+. .++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|.+||.|++.++ .+|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred CCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHH
T ss_conf 53369999989988999999767443899849989999999998499999998614378768998899853110137888
Q ss_pred CCEEEECCCCCCCCCCHHHHHCCCCC---HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCC
Q ss_conf 72799708998897536564328997---478999996631788653344546668999999767931233310037755
Q 001446 909 CGIFYVPQRPYTCLGTLRDQIIYPLS---REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 985 (1075)
Q Consensus 909 ~~i~~VpQdp~LF~GTIr~NL~yp~~---~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt 985 (1075)
.++++|||+|++|++||++|+.++.. ..+...++ ....++..+++.+|.|+++
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~------------------------~~~~~~~~~i~~l~~g~~~ 143 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAA------------------------AVKSGAHSFISGLPQGYDT 143 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHH------------------------HHHHTCHHHHHTSTTGGGC
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHH------------------------HHHHHHHHHHHHCCCCCHH
T ss_conf 7765404565002763465545421013027889999------------------------9999899999856121113
Q ss_pred CC-CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEECCCCCCHHHCCCEEE
Q ss_conf 56-64337993688799999975407978676156889998899999999873----49669994379895300121389
Q 001446 986 NL-NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALIPFHSLELR 1060 (1075)
Q Consensus 986 ~~-~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~~e~~i~~~~~~----~~~TvI~IaHRl~~i~~~~~~l~ 1060 (1075)
.. ..+.+||||||||+||||||+++|+|+|||||||+||+.++..+.+.+.+ .++|+|+|+||+++++..|+++.
T Consensus 144 ~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~v 223 (251)
T d1jj7a_ 144 EVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILF 223 (251)
T ss_dssp BCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEE
T ss_pred HHHCCCCCCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEE
T ss_conf 67516766895470489986044568707871675765685368999999999765069899999597999985999999
Q ss_pred EECCC
Q ss_conf 87388
Q 001446 1061 LIDGE 1065 (1075)
Q Consensus 1061 ~~~g~ 1065 (1075)
+.+|.
T Consensus 224 l~~G~ 228 (251)
T d1jj7a_ 224 LEGGA 228 (251)
T ss_dssp EETTE
T ss_pred EECCE
T ss_conf 98999
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-44 Score=359.20 Aligned_cols=212 Identities=22% Similarity=0.310 Sum_probs=188.2
Q ss_pred CEEEEEEEEECCC-CCEEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCC------CCCCCCEE
Q ss_conf 1999958999599-9701451018891899899995986069999999957999994279969968------33346489
Q 001446 181 YIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~-~~~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~ 253 (1075)
.|+|+||+|.|+. ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EECCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCC---CCCCCCCHHHHHHHHHHHHH
Q ss_conf 990789998577889851799777656768999999999976990577219998566---78998793499999999987
Q 001446 254 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 330 (1075)
Q Consensus 254 ~v~Q~p~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqRi~lARal 330 (1075)
||||+|++|++|++|||.++.+ ..+.+++.++++.+++.+++..+|.+..+ ..|..||||||||++||||+
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal 154 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANP------GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL 154 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTST------TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9824465578400035223575------5438889999999755788876320134432787886698898987544344
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHCCEEEEECCCCCEEEECCCCCCC
Q ss_conf 179979998579979999999999999981--3975999916921686179499991898577832788863
Q 001446 331 YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSS 400 (1075)
Q Consensus 331 ~~~p~illlDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 400 (1075)
+++|+++|||||||+||+.+++.+++.+++ .++|+|+|||+++.+..+|+|++|++ |..++.+.+.++
T Consensus 155 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~--G~Iv~~G~~~el 224 (241)
T d2pmka1 155 VNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEK--GKIVEQGKHKEL 224 (241)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEET--TEEEEEECHHHH
T ss_pred HCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEEC--CEEEEECCHHHH
T ss_conf 4165135564776555989999999999998589989999788999984999999989--999998899999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=8.4e-45 Score=360.99 Aligned_cols=215 Identities=22% Similarity=0.359 Sum_probs=190.9
Q ss_pred CCCCEEEEEEEEECCCC-CEEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCC------CCCCC
Q ss_conf 87619999589995999-701451018891899899995986069999999957999994279969968------33346
Q 001446 178 EANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNK 250 (1075)
Q Consensus 178 ~~~~i~~~~v~~~~~~~-~~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~ 250 (1075)
..+.|+|+||+|.||++ .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++
T Consensus 13 ~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~ 92 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 92 (255)
T ss_dssp CSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHHH
T ss_conf 78879999889995999976064438998399899998899980999999997127863000153998753078888634
Q ss_pred CEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCC---CCCCCCCHHHHHHHHHH
Q ss_conf 489990789998577889851799777656768999999999976990577219998566---78998793499999999
Q 001446 251 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMA 327 (1075)
Q Consensus 251 ~i~~v~Q~p~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqRi~lA 327 (1075)
+++||||+|++|++|++|||.++.+ ..+++++.++++.+++.+++..+|.+..+ +.|..||||||||++||
T Consensus 93 ~i~~v~Q~~~lf~~Ti~eNi~~g~~------~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iA 166 (255)
T d2hyda1 93 QIGLVQQDNILFSDTVKENILLGRP------TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 166 (255)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCS------SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCCHHHHHHCCCC------CCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHH
T ss_conf 1456510156899879999851586------7999999999999697999973624201033388898499999999999
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHCCEEEEECCCCCEEEECCCCCCC
Q ss_conf 987179979998579979999999999999981--3975999916921686179499991898577832788863
Q 001446 328 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSS 400 (1075)
Q Consensus 328 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 400 (1075)
||++++|++++||||||+||++++..+++.+++ .++|+|+|||+++.+..+|+|++|++ |..++.+.+.++
T Consensus 167 Ral~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~--G~iv~~G~~~eL 239 (255)
T d2hyda1 167 RIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIEN--GHIVETGTHREL 239 (255)
T ss_dssp HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEET--TEEEEEECHHHH
T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEEC--CEEEEECCHHHH
T ss_conf 9985599899983765447977999999999987538889999689999985999999989--999998899999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.3e-44 Score=354.13 Aligned_cols=215 Identities=23% Similarity=0.337 Sum_probs=189.9
Q ss_pred CCCEEEEEEEEECCCC-CEEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCC------CCCCCC
Q ss_conf 7619999589995999-701451018891899899995986069999999957999994279969968------333464
Q 001446 179 ANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKE 251 (1075)
Q Consensus 179 ~~~i~~~~v~~~~~~~-~~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~ 251 (1075)
.+.|+|+||+|.||+. .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++++
T Consensus 11 ~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 90 (253)
T d3b60a1 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 90 (253)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred CEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHE
T ss_conf 30799998899929999763533289985999999999999859999999862168884689878801211106654206
Q ss_pred EEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCC---CCCCCCCHHHHHHHHHHH
Q ss_conf 89990789998577889851799777656768999999999976990577219998566---789987934999999999
Q 001446 252 IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMAR 328 (1075)
Q Consensus 252 i~~v~Q~p~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqRi~lAR 328 (1075)
++|+||+|+++++|+++|+.++.. ...+++++.++++.+++.++++.+|.+..+ +.+..||||||||++|||
T Consensus 91 i~~v~Q~~~l~~~ti~~n~~~~~~-----~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 91 VALVSQNVHLFNDTVANNIAYART-----EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 165 (253)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTTT-----SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCHHHHHHHCCC-----CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 879950254478620243320572-----208999999999998179999735544101434888984999999999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHCCEEEEECCCCCEEEECCCCCCC
Q ss_conf 87179979998579979999999999999981--3975999916921686179499991898577832788863
Q 001446 329 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSS 400 (1075)
Q Consensus 329 al~~~p~illlDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 400 (1075)
|++++|++++||||||+||+.++..+++.+++ .++|+|+|||+++.+..+|+|++|++ |..++.+.+.++
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~--G~Iv~~G~~~eL 237 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVED--GIIVERGTHSEL 237 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEET--TEEEEEECHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEEC--CEEEEECCHHHH
T ss_conf 995499889951644458988999999999875227889999887999985999999989--999998899999
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-43 Score=352.51 Aligned_cols=215 Identities=24% Similarity=0.360 Sum_probs=187.6
Q ss_pred CCCEEEEEEEEECCCC--CEEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCC------CCCCC
Q ss_conf 7619999589995999--701451018891899899995986069999999957999994279969968------33346
Q 001446 179 ANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNK 250 (1075)
Q Consensus 179 ~~~i~~~~v~~~~~~~--~~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~ 250 (1075)
.+.|+|+||+|.||+. ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++
T Consensus 9 ~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 88 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 88 (251)
T ss_dssp CCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHHH
T ss_conf 33699999899889999997674438998499899999999984999999986143787689988998531101378887
Q ss_pred CEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCC---CCCCCCCHHHHHHHHHH
Q ss_conf 489990789998577889851799777656768999999999976990577219998566---78998793499999999
Q 001446 251 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMA 327 (1075)
Q Consensus 251 ~i~~v~Q~p~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqRi~lA 327 (1075)
+++||+|+|++|++|+++|+.++... .....+..+.+...++.+++..+|.+..+ +.+..||||||||++||
T Consensus 89 ~i~~v~Q~~~lf~~tv~eni~~g~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiA 163 (251)
T d1jj7a_ 89 QVAAVGQEPQVFGRSLQENIAYGLTQ-----KPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALA 163 (251)
T ss_dssp HEEEECSSCCCCSSBHHHHHHCSCSS-----CCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEE
T ss_conf 76540456500276346554542101-----3027889999999989999985612111367516766895470489986
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEEECCHHHHHHCCEEEEECCCCCEEEECCCCCCC
Q ss_conf 987179979998579979999999999999981----3975999916921686179499991898577832788863
Q 001446 328 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSS 400 (1075)
Q Consensus 328 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 400 (1075)
||++++|+++|||||||+||+.++..+++.+++ .++|+|+|||+++.+..+|+|++|++ |..++.+++.++
T Consensus 164 Ral~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~--G~iv~~Gt~~eL 238 (251)
T d1jj7a_ 164 RALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEG--GAIREGGTHQQL 238 (251)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEET--TEEEEEECHHHH
T ss_pred ECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEEC--CEEEEECCHHHH
T ss_conf 044568707871675765685368999999999765069899999597999985999999989--999998899999
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3.2e-44 Score=356.42 Aligned_cols=212 Identities=22% Similarity=0.399 Sum_probs=186.4
Q ss_pred EEEEEEEEECCCCCEEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCC------CCCCCCEEEE
Q ss_conf 9999589995999701451018891899899995986069999999957999994279969968------3334648999
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 255 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~------~~~~~~i~~v 255 (1075)
|+++||+|.|++++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++++++||
T Consensus 2 le~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 81 (242)
T d1mv5a_ 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (242)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEEE
T ss_conf 79998899879998414225899859999999999999799999999996098987798899884424678887436797
Q ss_pred CCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCC---CCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 0789998577889851799777656768999999999976990577219998566---7899879349999999998717
Q 001446 256 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYH 332 (1075)
Q Consensus 256 ~Q~p~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqRi~lARal~~ 332 (1075)
||+|++|++|++||+.++... ...++++.++++.+++.++...+|.+..+ +.|.+||||||||++||||+++
T Consensus 82 ~Q~~~lf~~ti~eNi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~ 156 (242)
T d1mv5a_ 82 SQDSAIMAGTIRENLTYGLEG-----DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (242)
T ss_dssp CCSSCCCCEEHHHHTTSCTTS-----CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHEECCCCC-----CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 566545785345430124455-----542356778999997555420374210152368789879999999999999852
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHCCEEEEECCCCCEEEECCCCCCC
Q ss_conf 9979998579979999999999999981--3975999916921686179499991898577832788863
Q 001446 333 KPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSS 400 (1075)
Q Consensus 333 ~p~illlDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 400 (1075)
+|+++|||||||+||+.++..+++.+++ .++|+|+|||+++.+..||+|++|++ |..++.+++.++
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~--G~iv~~G~~~eL 224 (242)
T d1mv5a_ 157 NPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEK--GQITGSGKHNEL 224 (242)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEET--TEECCCSCHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEEC--CEEEEECCHHHH
T ss_conf 99899965886556988999998878887179989999787999984999999989--999999999999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.7e-42 Score=339.57 Aligned_cols=202 Identities=22% Similarity=0.342 Sum_probs=172.2
Q ss_pred CCEEEEEEEEECCCCCEEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEECCCC
Q ss_conf 61999958999599970145101889189989999598606999999995799999427996996833346489990789
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 259 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~p 259 (1075)
+.+.|+|+++ .++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +++|+||+|
T Consensus 37 ~~i~~~~~~~---~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------~i~~v~Q~~ 106 (281)
T d1r0wa_ 37 NNVSFSHLCL---VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------RVSFCSQFS 106 (281)
T ss_dssp ---CHHHHHH---TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------CEEEECSSC
T ss_pred CCEEEEECCC---CCCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------EEEEEECCC
T ss_conf 9679997698---997677375999859999999989998299999999579747882899999-------999981643
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCC---CCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 998577889851799777656768999999999976990577219998566---78998793499999999987179979
Q 001446 260 YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKF 336 (1075)
Q Consensus 260 ~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---~~g~~LSgGqkqRi~lARal~~~p~i 336 (1075)
+++++|+++|+.++.. ..+.++.++++.+.+..++..++.+..+ +.+.+||||||||++|||||+++|++
T Consensus 107 ~l~~~tv~eni~~~~~-------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~i 179 (281)
T d1r0wa_ 107 WIMPGTIKENIIFGVS-------YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADL 179 (281)
T ss_dssp CCCSEEHHHHHTTTSC-------CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred CCCCCEEECCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 0267603214203334-------560579999999776999984612332355554237799999999999999869635
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHH---CCCEEEEEECCHHHHHHCCEEEEECCCCCEEEECCCCCCC
Q ss_conf 998579979999999999999981---3975999916921686179499991898577832788863
Q 001446 337 AILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSS 400 (1075)
Q Consensus 337 lllDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 400 (1075)
+|||||||+||+.++..+++.+.. .++|+|+|||+++.+..||+|++|++ |..++.+++.++
T Consensus 180 llLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~--G~i~~~Gt~~eL 244 (281)
T d1r0wa_ 180 YLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQ--GSSYFYGTFSEL 244 (281)
T ss_dssp EEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEET--TEEEEEECHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEEC--CEEEEECCHHHH
T ss_conf 13338554489899999999999886289999999252899985999999989--999998789999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=6.9e-39 Score=314.93 Aligned_cols=205 Identities=20% Similarity=0.296 Sum_probs=176.7
Q ss_pred CEEEEEEEEECCCCCEEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCC----CCCCCCEEEEC
Q ss_conf 19999589995999701451018891899899995986069999999957999994279969968----33346489990
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 256 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~----~~~~~~i~~v~ 256 (1075)
.|+++|+++.|+ +..+|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ...+++++|||
T Consensus 6 ~I~v~nlsk~yg-~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~ 84 (239)
T d1v43a3 6 EVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 84 (239)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred EEEEEEEEEEEC-CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEEEEE
T ss_conf 499987999999-9999813067887998999999999829999999975899987879991641354770001589980
Q ss_pred CCCCCCC-CCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 7899985-778898517997776567689999999999769905772199985667899879349999999998717997
Q 001446 257 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 335 (1075)
Q Consensus 257 Q~p~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRi~lARal~~~p~ 335 (1075)
|+|.++. .|++||+.++...........++++.++++.+++.++.++.| ..||||||||++|||||+.+|+
T Consensus 85 Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSGGq~QRvaiAraL~~~P~ 156 (239)
T d1v43a3 85 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP--------AQLSGGQRQRVAVARAIVVEPD 156 (239)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT--------TTCCSSCHHHHHHHHHHTTCCS
T ss_pred ECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCH--------HHCCHHHHHHHHHHHHHCCCCC
T ss_conf 03353422209999999998739999999999999998759855660995--------4699999889999766404998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEEECCHHHH-HHCCEEEEECCCCCEEEECCC
Q ss_conf 9998579979999999999999981----397599991692168-617949999189857783278
Q 001446 336 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGEGEWRVHDKR 396 (1075)
Q Consensus 336 illlDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~~~~~~~~~~~ 396 (1075)
+++|||||++||+.+...+++.+++ .|+|+|+|||++..+ ..||++++|++ |..++.+.
T Consensus 157 iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~--G~iv~~G~ 220 (239)
T d1v43a3 157 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNR--GQLLQIGS 220 (239)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEET--TEEEEEEC
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC--CEEEEECC
T ss_conf 24306886668989998999999999873198079994899999986999999989--99999859
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.9e-39 Score=316.12 Aligned_cols=195 Identities=22% Similarity=0.327 Sum_probs=164.6
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEE
Q ss_conf 99538810056379853323234236508986999849999588999999289999988276489877534588672799
Q 001446 834 QDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 913 (1075)
Q Consensus 834 ~g~I~f~~Vsf~yp~~~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~~~r~~i~~ 913 (1075)
...|+|+|++|. +.|||+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|. ++|
T Consensus 36 ~~~i~~~~~~~~---g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~-----------i~~ 101 (281)
T d1r0wa_ 36 ENNVSFSHLCLV---GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR-----------VSF 101 (281)
T ss_dssp ----CHHHHHHT---TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSC-----------EEE
T ss_pred CCCEEEEECCCC---CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCE-----------EEE
T ss_conf 896799976989---976773759998599999999899982999999995797478828999999-----------999
Q ss_pred ECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCC-CCCCC
Q ss_conf 70899889753656432899747899999663178865334454666899999976793123331003775556-64337
Q 001446 914 VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL-NWEDI 992 (1075)
Q Consensus 914 VpQdp~LF~GTIr~NL~yp~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~-~~g~~ 992 (1075)
+||+|++|++|+++|+.++...++. ....+++.+.+...+...++++++.. ..+.+
T Consensus 102 v~Q~~~l~~~tv~eni~~~~~~~~~-----------------------~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 158 (281)
T d1r0wa_ 102 CSQFSWIMPGTIKENIIFGVSYDEY-----------------------RYKSVVKACQLQQDITKFAEQDNTVLGEGGVT 158 (281)
T ss_dssp ECSSCCCCSEEHHHHHTTTSCCCHH-----------------------HHHHHHHHTTCHHHHTTSTTGGGCEECTTCTT
T ss_pred EECCCCCCCCEEECCCCCCCCCCCH-----------------------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
T ss_conf 8164302676032142033345605-----------------------79999999776999984612332355554237
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH-HHH--CCCEEEEECCCCCCHHHCCCEEEEECCC
Q ss_conf 993688799999975407978676156889998899999999-873--4966999437989530012138987388
Q 001446 993 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRL-AKD--MGITFVTSSQRPALIPFHSLELRLIDGE 1065 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~~e~~i~~~-~~~--~~~TvI~IaHRl~~i~~~~~~l~~~~g~ 1065 (1075)
||||||||+||||||+++|+|||||||||+||+.+++.+.+. +.. .++|+|+|+||++.++..|+++.+.+|+
T Consensus 159 LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~ 234 (281)
T d1r0wa_ 159 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGS 234 (281)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCE
T ss_conf 7999999999999998696351333855448989999999999988628999999925289998599999998999
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=4.8e-39 Score=316.14 Aligned_cols=206 Identities=27% Similarity=0.357 Sum_probs=176.2
Q ss_pred CEEEEEEEEECCCC-CEEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCC---------CCCCC
Q ss_conf 19999589995999-701451018891899899995986069999999957999994279969968---------33346
Q 001446 181 YIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLNK 250 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~-~~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~---------~~~~~ 250 (1075)
.|+++|++..|+.+ ..+|+++||++++||+++|+||||||||||+++|.|+.+|++|+|.++|.+ ...++
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CEEEECCCCCCCCC-CHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 48999078999857-78898517997776567689999999999769905772199985667899879349999999998
Q 001446 251 EIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 329 (1075)
Q Consensus 251 ~i~~v~Q~p~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRi~lARa 329 (1075)
+++||+|+|.+++. |+.|||.++...........++++.++++.+++.++.++.| ..||||||||++||||
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p--------~~LSGGqkQRvaiARa 154 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP--------RELSGAQQQRVALARA 154 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG--------GGSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCH--------HHCCHHHHHHHHHHHH
T ss_conf 51477304334666657777665567613799999999999986659176664895--------4599999858998757
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEEECCHHHH-HHCCEEEEECCCCCEEEECCC
Q ss_conf 7179979998579979999999999999981----397599991692168-617949999189857783278
Q 001446 330 FYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGEGEWRVHDKR 396 (1075)
Q Consensus 330 l~~~p~illlDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~~~~~~~~~~~ 396 (1075)
|..+|+++||||||++||+.+...+++.+++ .|.|+|++||+++.+ ..||++++|++ |..++.+.
T Consensus 155 L~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~--G~iv~~g~ 224 (242)
T d1oxxk2 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVK--GKLVQVGK 224 (242)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEET--TEEEEEEC
T ss_pred HHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEEC--CEEEEECC
T ss_conf 76046614544786679989988998999999863598799997999999996999999989--99999869
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.8e-39 Score=316.18 Aligned_cols=204 Identities=21% Similarity=0.336 Sum_probs=175.3
Q ss_pred EEEEEEEEECCCCCEEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCC----CCCCCCEEEECC
Q ss_conf 9999589995999701451018891899899995986069999999957999994279969968----333464899907
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 257 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~----~~~~~~i~~v~Q 257 (1075)
|+++|+++.|. +..+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ...+++++||||
T Consensus 1 Iev~nv~k~yg-~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q 79 (232)
T d2awna2 1 VQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 79 (232)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECS
T ss_pred CEEEEEEEEEC-CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEECC
T ss_conf 99999999989-99998111778869989999989998299999999658788888899999977888644432223433
Q ss_pred CCCCCCC-CHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 8999857-788985179977765676899999999997699057721999856678998793499999999987179979
Q 001446 258 RPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 336 (1075)
Q Consensus 258 ~p~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRi~lARal~~~p~i 336 (1075)
+|.++.. |+.||+.++............+++.++++.+++.++.++.| ..||||||||++||||++.+|++
T Consensus 80 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~--------~~LSGGqkQRvaiAraL~~~P~i 151 (232)
T d2awna2 80 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP--------KALSGGQRQRVAIGRTLVAEPSV 151 (232)
T ss_dssp SCCC---------------------CHHHHHHHHHHHHC-----------------------------CHHHHHHTCCSE
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH--------HHCCHHHHHHHHHHHHHHCCCCE
T ss_conf 4202643337889789998759988999999999997578865664896--------56999999999999997039988
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEEECCHHHHH-HCCEEEEECCCCCEEEECCC
Q ss_conf 998579979999999999999981----3975999916921686-17949999189857783278
Q 001446 337 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEWRVHDKR 396 (1075)
Q Consensus 337 lllDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~~~~~~~~~~~ 396 (1075)
++|||||++||+.+...+++.+++ .|+|+|++||++..+. .||++++|++ |..++.+.
T Consensus 152 lllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~--G~iv~~G~ 214 (232)
T d2awna2 152 FLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDA--GRVAQVGK 214 (232)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEET--TEEEEEEC
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC--CEEEEEEC
T ss_conf 9975888788988998999999999874298799994899999996999999979--99999808
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.8e-39 Score=316.97 Aligned_cols=208 Identities=25% Similarity=0.336 Sum_probs=176.2
Q ss_pred EEEEEEEEECCCCC---EEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCC---------CCCC
Q ss_conf 99995899959997---01451018891899899995986069999999957999994279969968---------3334
Q 001446 182 IEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLN 249 (1075)
Q Consensus 182 i~~~~v~~~~~~~~---~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~---------~~~~ 249 (1075)
|+++|++..|+.+. .+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ..+|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCEEEECCCCCCCCC-CHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 648999078999857-7889851799777656768999999999976990577219998566789987934999999999
Q 001446 250 KEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 328 (1075)
Q Consensus 250 ~~i~~v~Q~p~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRi~lAR 328 (1075)
++++||||+|-+++. |++||+.++............+++.++++.++|.+..++.| ..||||||||++|||
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~--------~~LSGG~~QRvaiAr 153 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP--------SNLSGGQKQRVAIAR 153 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCB--------SCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCH--------HHCCHHHHHHHHHHH
T ss_conf 166430225222799649999999999849998999999999999769903554894--------349999998999864
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEEECCHHHHH-HCCEEEEECCCCCEEEECCCCCC
Q ss_conf 87179979998579979999999999999981----3975999916921686-17949999189857783278886
Q 001446 329 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEWRVHDKRDGS 399 (1075)
Q Consensus 329 al~~~p~illlDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~~~~~~~~~~~~~~ 399 (1075)
|+..+|+++||||||++||+.+...+++.+++ .|.|+|+|||++..+. .||++++|++ |..++.+...+
T Consensus 154 aL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~--G~iv~~G~~~e 227 (240)
T d3dhwc1 154 ALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISN--GELIEQDTVSE 227 (240)
T ss_dssp HHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEET--TEEEEEEETTT
T ss_pred HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEEC--CEEEEECCHHH
T ss_conf 010589868744655658988856799999999864697899983899999986999999979--99999879999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.6e-38 Score=312.09 Aligned_cols=197 Identities=23% Similarity=0.369 Sum_probs=114.2
Q ss_pred EEEEEEEEECCCCC---EEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCC------C---C-
Q ss_conf 99995899959997---014510188918998999959860699999999579999942799699683------3---3-
Q 001446 182 IEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D---L- 248 (1075)
Q Consensus 182 i~~~~v~~~~~~~~---~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~---~- 248 (1075)
|+++|+++.|+.+. .+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+- . +
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred CCCEEEECCCCCCCC-CCHHHHHCCCCCCCCCC---CCCCHHHHHHHHHHCCCHH-HHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 464899907899985-77889851799777656---7689999999999769905-772199985667899879349999
Q 001446 249 NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEV---EPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQR 323 (1075)
Q Consensus 249 ~~~i~~v~Q~p~l~~-~ti~~ni~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~g~~LSgGqkqR 323 (1075)
+++++||+|+|.+++ -|+.||+.++....... .....+++.+.++.+++.+ +.++.| ..||||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p--------~~LSGGqkQR 153 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP--------NQLSGGQQQR 153 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG--------GGSCHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH--------HHCCHHHHHH
T ss_conf 55577880412417686688877578887224789999999999998876242345534880--------2389999999
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEEECCHHHHHHCCEEEEECC
Q ss_conf 9999987179979998579979999999999999981----39759999169216861794999918
Q 001446 324 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 386 (1075)
Q Consensus 324 i~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~~~d~i~~l~~ 386 (1075)
++||||+..+|++++||||||+||+.+...+++.+++ .|+|+|+|||+++....||++++|++
T Consensus 154 vaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~ 220 (230)
T d1l2ta_ 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKD 220 (230)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEET
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEEC
T ss_conf 9987565227888994687654698999999999999998439999998788899986998999989
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.8e-39 Score=317.95 Aligned_cols=200 Identities=22% Similarity=0.238 Sum_probs=163.5
Q ss_pred EEEEEEEEECCCCC---CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC------CC
Q ss_conf 38810056379853---3232342365089869998499995889999992899999882764898775345------88
Q 001446 837 ISFSKLDIITPSQK---LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA------GS 907 (1075)
Q Consensus 837 I~f~~Vsf~yp~~~---~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~------~~ 907 (1075)
|+++||++.|+... .+|+|+||+|++||.+||+||||||||||++++.|+++|++|+|.+||.|+...+ ..
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred CCCEEEECCCCCCCCC-CHHHHHCCCCC------HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHH-HHHH
Q ss_conf 6727997089988975-36564328997------47899999663178865334454666899999976793123-3310
Q 001446 908 GCGIFYVPQRPYTCLG-TLRDQIIYPLS------REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL-LERE 979 (1075)
Q Consensus 908 r~~i~~VpQdp~LF~G-TIr~NL~yp~~------~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~-~~~~ 979 (1075)
|.+|++|+|+|.||+. |++||+.+|.. .+..+ ....+.+.++.++|.+- ....
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-------------------~~~~~~~~l~~~~L~~~~~~~~ 142 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE-------------------RRKRALECLKMAELEERFANHK 142 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHH-------------------HHHHHHHHHHHTTCCGGGTTCC
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHH-------------------HHHHHHHHHHHHCHHHHHHCCC
T ss_conf 555778804124176866888775788872247899999-------------------9999999887624234553488
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH----HCCCEEEEECCCCCCHHHC
Q ss_conf 037755566433799368879999997540797867615688999889999999987----3496699943798953001
Q 001446 980 EVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPALIPFH 1055 (1075)
Q Consensus 980 ~~G~dt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~~e~~i~~~~~----~~~~TvI~IaHRl~~i~~~ 1055 (1075)
...||||||||+||||||+.+|++|+||||||+||+.+.+.+.+.++ +.++|+|+|+|++...++.
T Consensus 143 ----------p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~ 212 (230)
T d1l2ta_ 143 ----------PNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFG 212 (230)
T ss_dssp ----------GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTS
T ss_pred ----------HHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHC
T ss_conf ----------0238999999999875652278889946876546989999999999999984399999987888999869
Q ss_pred CCEEEEECCC
Q ss_conf 2138987388
Q 001446 1056 SLELRLIDGE 1065 (1075)
Q Consensus 1056 ~~~l~~~~g~ 1065 (1075)
|+++.+.+|+
T Consensus 213 drv~~m~~G~ 222 (230)
T d1l2ta_ 213 ERIIYLKDGE 222 (230)
T ss_dssp SEEEEEETTE
T ss_pred CEEEEEECCE
T ss_conf 9899998999
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-39 Score=319.10 Aligned_cols=202 Identities=19% Similarity=0.335 Sum_probs=169.6
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEECC
Q ss_conf 38810056379853323234236508986999849999588999999289999988276489877534588672799708
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 916 (1075)
Q Consensus 837 I~f~~Vsf~yp~~~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~~~r~~i~~VpQ 916 (1075)
|+++||++.|. ...+|+|+||+|++||.+||+||||||||||++++.|+..|++|+|.++|.+++..+..|.+|++|||
T Consensus 1 Iev~nv~k~yg-~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q 79 (232)
T d2awna2 1 VQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 79 (232)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECS
T ss_pred CEEEEEEEEEC-CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEECC
T ss_conf 99999999989-99998111778869989999989998299999999658788888899999977888644432223433
Q ss_pred CCCCCCC-CHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 9988975-365643289974789999966317886533445466689999997679312333100377555664337993
Q 001446 917 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 995 (1075)
Q Consensus 917 dp~LF~G-TIr~NL~yp~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~~~g~~LSg 995 (1075)
+|.||+. |++||+.+|....... .+..+..+.++++.+++.+..++.| ..|||
T Consensus 80 ~~~l~~~~tv~eni~~~~~~~~~~----------------~~~~~~~v~~~l~~~~l~~~~~~~~----------~~LSG 133 (232)
T d2awna2 80 SYALYPHLSVAENMSFGLKLAGAK----------------KEVINQRVNQVAEVLQLAHLLDRKP----------KALSG 133 (232)
T ss_dssp SCCC-------------------------------------CHHHHHHHHHHHHC-------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCC----------------HHHHHHHHHHHHHHCCCHHHHHCCH----------HHCCH
T ss_conf 420264333788978999875998----------------8999999999997578865664896----------56999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH----HCCCEEEEECCCCC-CHHHCCCEEEEECCC
Q ss_conf 68879999997540797867615688999889999999987----34966999437989-530012138987388
Q 001446 996 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 996 GQrQrlaiARAlLr~p~ILiLDEATSaLD~~~e~~i~~~~~----~~~~TvI~IaHRl~-~i~~~~~~l~~~~g~ 1065 (1075)
|||||++|||||+.+|++|+||||||+||+.+...+.+.++ +.++|+|.|+|.+. ...+.|+++.+.+|+
T Consensus 134 GqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~ 208 (232)
T d2awna2 134 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 208 (232)
T ss_dssp ------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 999999999997039988997588878898899899999999987429879999489999999699999997999
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2e-38 Score=311.41 Aligned_cols=205 Identities=23% Similarity=0.320 Sum_probs=174.5
Q ss_pred CEEEEEEEEECCCCCEEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCC----------CCCC
Q ss_conf 199995899959997014510188918998999959860699999999579999942799699683----------3346
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNK 250 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~----------~~~~ 250 (1075)
.|+++|+++.|. +..+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+. ..++
T Consensus 3 ~i~v~nl~k~yg-~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r 81 (240)
T d1g2912 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (240)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred CEEEEEEEEEEC-CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCCC
T ss_conf 189986999989-9999856066886998999999999809999999964878898989999998035664442453225
Q ss_pred CEEEECCCCCCCCC-CHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 48999078999857-78898517997776567689999999999769905772199985667899879349999999998
Q 001446 251 EIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 329 (1075)
Q Consensus 251 ~i~~v~Q~p~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRi~lARa 329 (1075)
+++||+|+|-+++. |+.||+.++...........++++.++++.+++.++.++.| ..||||||||++||||
T Consensus 82 ~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p--------~~LSGGqkQRv~IAra 153 (240)
T d1g2912 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP--------RELSGGQRQRVALGRA 153 (240)
T ss_dssp SEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG--------GGSCHHHHHHHHHHHH
T ss_pred CCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCH--------HHCCHHHHHHHHHHHH
T ss_conf 51200221222310116676330687729998999999999998759966762993--------3499999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEEECCHHHH-HHCCEEEEECCCCCEEEECCC
Q ss_conf 7179979998579979999999999999981----397599991692168-617949999189857783278
Q 001446 330 FYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGEGEWRVHDKR 396 (1075)
Q Consensus 330 l~~~p~illlDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~~~~~~~~~~~ 396 (1075)
|..+|+++||||||++||+.+...+++.+++ .|.|+|++||+++.+ ..||++++|++ |..++.++
T Consensus 154 L~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~--G~iv~~G~ 223 (240)
T d1g2912 154 IVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNR--GVLQQVGS 223 (240)
T ss_dssp HHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEET--TEEEEEEC
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEEC--CEEEEECC
T ss_conf 82699889825887656989998999999999863698899995999999996999999989--99999859
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4e-39 Score=316.76 Aligned_cols=200 Identities=20% Similarity=0.259 Sum_probs=170.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEEC
Q ss_conf 53881005637985332323423650898699984999958899999928999998827648987753458867279970
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915 (1075)
Q Consensus 836 ~I~f~~Vsf~yp~~~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~~~r~~i~~Vp 915 (1075)
.|+++|++..|+ ...+|+|+||+|++||.++|+||||||||||++++.|++.|++|+|.++|.|++..+..|.+|+|||
T Consensus 6 ~I~v~nlsk~yg-~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~ 84 (239)
T d1v43a3 6 EVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 84 (239)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred EEEEEEEEEEEC-CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEEEEE
T ss_conf 499987999999-9999813067887998999999999829999999975899987879991641354770001589980
Q ss_pred CCCCCCC-CCHHHHHCCCCCH---HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 8998897-5365643289974---78999996631788653344546668999999767931233310037755566433
Q 001446 916 QRPYTCL-GTLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWED 991 (1075)
Q Consensus 916 Qdp~LF~-GTIr~NL~yp~~~---~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~~~g~ 991 (1075)
|+|.||+ -|+++|+.++... +..+ .+..+.++++.++|.....+.| .
T Consensus 85 Q~~~l~~~ltv~enl~~~~~~~~~~~~~-------------------~~~~~~~~l~~~~l~~~~~~~~----------~ 135 (239)
T d1v43a3 85 QSYAVWPHMTVYENIAFPLKIKKFPKDE-------------------IDKRVRWAAELLQIEELLNRYP----------A 135 (239)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHH-------------------HHHHHHHHHHHTTCGGGTTSCT----------T
T ss_pred ECHHHCCCCHHHHHHHHHHHHCCCCHHH-------------------HHHHHHHHHHHCCCHHHHCCCH----------H
T ss_conf 0335342220999999999873999999-------------------9999999998759855660995----------4
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH----HCCCEEEEECCCCC-CHHHCCCEEEEECCC
Q ss_conf 799368879999997540797867615688999889999999987----34966999437989-530012138987388
Q 001446 992 ILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 992 ~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~~e~~i~~~~~----~~~~TvI~IaHRl~-~i~~~~~~l~~~~g~ 1065 (1075)
.||||||||++|||||+.+|+||+||||||+||+.+...+.+.++ +.++|+|.|+|.+. ..++.|+++.+.+|+
T Consensus 136 ~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~ 214 (239)
T d1v43a3 136 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQ 214 (239)
T ss_dssp TCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 6999998899997664049982430688666898999899999999987319807999489999998699999998999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=6.1e-38 Score=307.55 Aligned_cols=200 Identities=26% Similarity=0.352 Sum_probs=171.8
Q ss_pred EEEEEEEEECCCCCEEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCC----CCCCCCEEEECC
Q ss_conf 9999589995999701451018891899899995986069999999957999994279969968----333464899907
Q 001446 182 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 257 (1075)
Q Consensus 182 i~~~~v~~~~~~~~~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~----~~~~~~i~~v~Q 257 (1075)
|+++|++..|.+ .+|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ...+++++||+|
T Consensus 2 i~v~nlsk~y~~--~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q 79 (229)
T d3d31a2 2 IEIESLSRKWKN--FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (229)
T ss_dssp EEEEEEEEECSS--CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred EEEEEEEEEECC--EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEECC
T ss_conf 899989999499--788433789879989999989998299999999647688878899956734652165740561512
Q ss_pred CCCCCCC-CHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 8999857-788985179977765676899999999997699057721999856678998793499999999987179979
Q 001446 258 RPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 336 (1075)
Q Consensus 258 ~p~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRi~lARal~~~p~i 336 (1075)
+|.++.. |++||+.++..... ....+++.++++.+++.++.++.| ..||||||||++||||++.+|++
T Consensus 80 ~~~l~~~~tV~enl~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSGG~~QRvaiAraL~~~P~i 148 (229)
T d3d31a2 80 NYSLFPHMNVKKNLEFGMRMKK---IKDPKRVLDTARDLKIEHLLDRNP--------LTLSGGEQQRVALARALVTNPKI 148 (229)
T ss_dssp TCCCCTTSCHHHHHHHHHHHHC---CCCHHHHHHHHHHTTCTTTTTSCG--------GGSCHHHHHHHHHHHHTTSCCSE
T ss_pred CCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHCCHHHHHCCH--------HHCCHHHHCCHHHHHHHHCCCCC
T ss_conf 1111746657788888776405---538999999999825655575895--------54799984014030434436771
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEEECCHHHHH-HCCEEEEECCCCCEEEECCC
Q ss_conf 998579979999999999999981----3975999916921686-17949999189857783278
Q 001446 337 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEWRVHDKR 396 (1075)
Q Consensus 337 lllDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~-~~d~i~~l~~~~~~~~~~~~ 396 (1075)
+||||||++||+.+...+++.+++ .|.|+|++||+++.+. .||++++|.++ ..++.+.
T Consensus 149 LllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G--~iv~~g~ 211 (229)
T d3d31a2 149 LLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDG--KLIQVGK 211 (229)
T ss_dssp EEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSS--CEEEEEC
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECC--EEEEECC
T ss_conf 44347876799899999999999998647968999749999999969999999799--9999869
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.2e-39 Score=317.52 Aligned_cols=201 Identities=20% Similarity=0.292 Sum_probs=169.6
Q ss_pred CEEEEEEEEECCCC-CCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCC-----CCCCC
Q ss_conf 53881005637985-3323234236508986999849999588999999289999988276489877534-----58867
Q 001446 836 SISFSKLDIITPSQ-KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-----AGSGC 909 (1075)
Q Consensus 836 ~I~f~~Vsf~yp~~-~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~-----~~~r~ 909 (1075)
.|+++||+..|+.+ ..+|+|+||+|++||.+||+|||||||||++++|.|+.+|++|+|.++|.|+... ...|.
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CEEEECCCCCCCCC-CHHHHHCCCCCH---HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCC
Q ss_conf 27997089988975-365643289974---78999996631788653344546668999999767931233310037755
Q 001446 910 GIFYVPQRPYTCLG-TLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 985 (1075)
Q Consensus 910 ~i~~VpQdp~LF~G-TIr~NL~yp~~~---~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt 985 (1075)
++++|+|+|.||+. |++||+.+|... +.. ..++.+.++++.++|.+.....|
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~-------------------~~~~~v~~~l~~~gL~~~~~~~p----- 138 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE-------------------EIRKRVEEVAKILDIHHVLNHFP----- 138 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHH-------------------HHHHHHHHHHHHTTCGGGTTSCG-----
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHH-------------------HHHHHHHHHHHHCCHHHHHHCCH-----
T ss_conf 514773043346666577776655676137999-------------------99999999986659176664895-----
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH----HCCCEEEEECCCCC-CHHHCCCEEE
Q ss_conf 566433799368879999997540797867615688999889999999987----34966999437989-5300121389
Q 001446 986 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPA-LIPFHSLELR 1060 (1075)
Q Consensus 986 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~~e~~i~~~~~----~~~~TvI~IaHRl~-~i~~~~~~l~ 1060 (1075)
..||||||||+||||||+.+|++|+||||||+||+.+...+.+.++ +.+.|+|.|+|.+. ...+.|+++.
T Consensus 139 -----~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~v 213 (242)
T d1oxxk2 139 -----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGV 213 (242)
T ss_dssp -----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEE
T ss_pred -----HHCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEE
T ss_conf -----459999985899875776046614544786679989988998999999863598799997999999996999999
Q ss_pred EECCC
Q ss_conf 87388
Q 001446 1061 LIDGE 1065 (1075)
Q Consensus 1061 ~~~g~ 1065 (1075)
+.+|+
T Consensus 214 m~~G~ 218 (242)
T d1oxxk2 214 LVKGK 218 (242)
T ss_dssp EETTE
T ss_pred EECCE
T ss_conf 98999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=4.5e-39 Score=316.35 Aligned_cols=198 Identities=19% Similarity=0.262 Sum_probs=166.9
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEECC
Q ss_conf 38810056379853323234236508986999849999588999999289999988276489877534588672799708
Q 001446 837 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQ 916 (1075)
Q Consensus 837 I~f~~Vsf~yp~~~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~~~r~~i~~VpQ 916 (1075)
|+++|++..|.+ .+|+|+||+|++||.++|+|||||||||++++|.|+.+|++|+|.++|.|+...+..|.++++|||
T Consensus 2 i~v~nlsk~y~~--~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q 79 (229)
T d3d31a2 2 IEIESLSRKWKN--FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (229)
T ss_dssp EEEEEEEEECSS--CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred EEEEEEEEEECC--EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEECC
T ss_conf 899989999499--788433789879989999989998299999999647688878899956734652165740561512
Q ss_pred CCCCCCC-CHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 9988975-365643289974789999966317886533445466689999997679312333100377555664337993
Q 001446 917 RPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSL 995 (1075)
Q Consensus 917 dp~LF~G-TIr~NL~yp~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~~~g~~LSg 995 (1075)
+|.||+. |++||+.++... .+. ..+..+.++++.+++.++.+.. ...|||
T Consensus 80 ~~~l~~~~tV~enl~~~~~~----------~~~---------~~~~~~~~~l~~~~l~~~~~~~----------~~~LSG 130 (229)
T d3d31a2 80 NYSLFPHMNVKKNLEFGMRM----------KKI---------KDPKRVLDTARDLKIEHLLDRN----------PLTLSG 130 (229)
T ss_dssp TCCCCTTSCHHHHHHHHHHH----------HCC---------CCHHHHHHHHHHTTCTTTTTSC----------GGGSCH
T ss_pred CCCCCCCCCHHHHHHHHHHH----------CCC---------CHHHHHHHHHHHHCCHHHHHCC----------HHHCCH
T ss_conf 11117466577888887764----------055---------3899999999982565557589----------554799
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH----HCCCEEEEECCCCC-CHHHCCCEEEEECCC
Q ss_conf 68879999997540797867615688999889999999987----34966999437989-530012138987388
Q 001446 996 GEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 996 GQrQrlaiARAlLr~p~ILiLDEATSaLD~~~e~~i~~~~~----~~~~TvI~IaHRl~-~i~~~~~~l~~~~g~ 1065 (1075)
|||||++|||||+.+|++|+||||||+||+.+...+.+.++ +.+.|+|.|+|++. ...+.|+++.+.+|+
T Consensus 131 G~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~ 205 (229)
T d3d31a2 131 GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGK 205 (229)
T ss_dssp HHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSC
T ss_pred HHHCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCE
T ss_conf 984014030434436771443478767998999999999999986479689997499999999699999997999
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.4e-38 Score=308.67 Aligned_cols=200 Identities=20% Similarity=0.303 Sum_probs=167.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC------CCCC
Q ss_conf 5388100563798533232342365089869998499995889999992899999882764898775345------8867
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA------GSGC 909 (1075)
Q Consensus 836 ~I~f~~Vsf~yp~~~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~------~~r~ 909 (1075)
.|+++||+..|. ...+|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.|+...+ ..|.
T Consensus 3 ~i~v~nl~k~yg-~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r 81 (240)
T d1g2912 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (240)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred CEEEEEEEEEEC-CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCCC
T ss_conf 189986999989-9999856066886998999999999809999999964878898989999998035664442453225
Q ss_pred CEEEECCCCCCCCC-CHHHHHCCCCCH---HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCC
Q ss_conf 27997089988975-365643289974---78999996631788653344546668999999767931233310037755
Q 001446 910 GIFYVPQRPYTCLG-TLRDQIIYPLSR---EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDA 985 (1075)
Q Consensus 910 ~i~~VpQdp~LF~G-TIr~NL~yp~~~---~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt 985 (1075)
++++|||+|.||+. |++||+.+|... +.+ ..+..+.+.++.+++.+.....|
T Consensus 82 ~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~-------------------e~~~~v~~~l~~~~l~~~~~~~p----- 137 (240)
T d1g2912 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQ-------------------EIDQRVREVAELLGLTELLNRKP----- 137 (240)
T ss_dssp SEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHH-------------------HHHHHHHHHHHHHTCGGGTTCCG-----
T ss_pred CCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHH-------------------HHHHHHHHHHHHCCCHHHHCCCH-----
T ss_conf 512002212223101166763306877299989-------------------99999999998759966762993-----
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH----HCCCEEEEECCCCCC-HHHCCCEEE
Q ss_conf 566433799368879999997540797867615688999889999999987----349669994379895-300121389
Q 001446 986 NLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPAL-IPFHSLELR 1060 (1075)
Q Consensus 986 ~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~~e~~i~~~~~----~~~~TvI~IaHRl~~-i~~~~~~l~ 1060 (1075)
..||||||||++|||||+.+|++|+|||||++||+.+...+.+.++ +.|.|+|.|+|++.. .++.|+++.
T Consensus 138 -----~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~v 212 (240)
T d1g2912 138 -----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAV 212 (240)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred -----HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEE
T ss_conf -----349999999999999982699889825887656989998999999999863698899995999999996999999
Q ss_pred EECCC
Q ss_conf 87388
Q 001446 1061 LIDGE 1065 (1075)
Q Consensus 1061 ~~~g~ 1065 (1075)
+.+|+
T Consensus 213 m~~G~ 217 (240)
T d1g2912 213 MNRGV 217 (240)
T ss_dssp EETTE
T ss_pred EECCE
T ss_conf 98999
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-38 Score=311.14 Aligned_cols=203 Identities=20% Similarity=0.246 Sum_probs=166.1
Q ss_pred EEEEEEEEECCCCC---CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC-----CCC
Q ss_conf 38810056379853---3232342365089869998499995889999992899999882764898775345-----886
Q 001446 837 ISFSKLDIITPSQK---LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA-----GSG 908 (1075)
Q Consensus 837 I~f~~Vsf~yp~~~---~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~-----~~r 908 (1075)
|+++||+..|+... .+|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.++|.|+...+ .+|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCEEEECCCCCCCCC-CHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCC
Q ss_conf 727997089988975-3656432899747899999663178865334454666899999976793123331003775556
Q 001446 909 CGIFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANL 987 (1075)
Q Consensus 909 ~~i~~VpQdp~LF~G-TIr~NL~yp~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~ 987 (1075)
.++++|||+|.||+. |++||+.+|... .+. ..+.....+.++++.++|.+..++.
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~----------~~~------~~~~~~~~v~~~L~~vgL~~~~~~~-------- 137 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLEL----------DNT------PKDEVKRRVTELLSLVGLGDKHDSY-------- 137 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHT----------TTC------CTTHHHHHHHHHHHHHSTTTTTSSC--------
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHH----------CCC------CHHHHHHHHHHHHHHCCCCHHHHCC--------
T ss_conf 1664302252227996499999999998----------499------9899999999999976990355489--------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH----HCCCEEEEECCCCCCH-HHCCCEEEEE
Q ss_conf 6433799368879999997540797867615688999889999999987----3496699943798953-0012138987
Q 001446 988 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPALI-PFHSLELRLI 1062 (1075)
Q Consensus 988 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~~e~~i~~~~~----~~~~TvI~IaHRl~~i-~~~~~~l~~~ 1062 (1075)
...||||||||+||||||+.+|++|||||||++||+.+...+.+.++ +.+.|+|.|+|.+..+ .+.|+++.+.
T Consensus 138 --~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~ 215 (240)
T d3dhwc1 138 --PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVIS 215 (240)
T ss_dssp --BSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEE
T ss_pred --HHHCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEE
T ss_conf --434999999899986401058986874465565898885679999999986469789998389999998699999997
Q ss_pred CCC
Q ss_conf 388
Q 001446 1063 DGE 1065 (1075)
Q Consensus 1063 ~g~ 1065 (1075)
+|+
T Consensus 216 ~G~ 218 (240)
T d3dhwc1 216 NGE 218 (240)
T ss_dssp TTE
T ss_pred CCE
T ss_conf 999
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8e-37 Score=298.86 Aligned_cols=205 Identities=20% Similarity=0.243 Sum_probs=170.5
Q ss_pred CEEEEEEEEECCCCCEEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCC--------------
Q ss_conf 199995899959997014510188918998999959860699999999579999942799699683--------------
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------------- 246 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~-------------- 246 (1075)
.|+++|+++.|. +..+|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+.
T Consensus 2 ~Lev~nl~k~yg-~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~ 80 (258)
T d1b0ua_ 2 KLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 80 (258)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred EEEEEEEEEEEC-CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCCC
T ss_conf 699997899989-9998815066886997999998999829999999974766789977999999336775200002351
Q ss_pred -----CCCCCEEEECCCCCCCC-CCHHHHHCCCC-CCCCCCCCCCHHHHHHHHHHCCCHHH-HHCCCCCCCCCCCCCCCH
Q ss_conf -----33464899907899985-77889851799-77765676899999999997699057-721999856678998793
Q 001446 247 -----DLNKEIFYVPQRPYTAV-GTLRDQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSL 318 (1075)
Q Consensus 247 -----~~~~~i~~v~Q~p~l~~-~ti~~ni~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~g~~LSg 318 (1075)
..+++++||+|+|.+++ -|+.+|+.++. ...........+++.++++.+++.+. .++.| ..|||
T Consensus 81 ~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p--------~~LSG 152 (258)
T d1b0ua_ 81 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP--------VHLSG 152 (258)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG--------GGSCH
T ss_pred HHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC--------CCCCH
T ss_conf 7679997454489983323141101021365657876299989999999999998299524430682--------20567
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH---CCCEEEEEECCHHHHH-HCCEEEEECCCCCEEEEC
Q ss_conf 499999999987179979998579979999999999999981---3975999916921686-179499991898577832
Q 001446 319 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGEGEWRVHD 394 (1075)
Q Consensus 319 GqkqRi~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~~~~~~~~~ 394 (1075)
|||||++||||+..+|+++||||||++||+.+...+++.+++ .|+|+|+|||+++.+. .||+|++|.+ |..++.
T Consensus 153 G~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~--G~iv~~ 230 (258)
T d1b0ua_ 153 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQ--GKIEEE 230 (258)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEET--TEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEEC--CEEEEE
T ss_conf 788898999998439987885245556887888899876554103688338994899999986999999979--999998
Q ss_pred CC
Q ss_conf 78
Q 001446 395 KR 396 (1075)
Q Consensus 395 ~~ 396 (1075)
+.
T Consensus 231 g~ 232 (258)
T d1b0ua_ 231 GD 232 (258)
T ss_dssp EC
T ss_pred CC
T ss_conf 49
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.6e-37 Score=299.52 Aligned_cols=200 Identities=19% Similarity=0.190 Sum_probs=164.1
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC----------
Q ss_conf 5388100563798533232342365089869998499995889999992899999882764898775345----------
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---------- 905 (1075)
Q Consensus 836 ~I~f~~Vsf~yp~~~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~---------- 905 (1075)
.|+++|++++|. ...||+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++....
T Consensus 2 ~Lev~nl~k~yg-~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~ 80 (258)
T d1b0ua_ 2 KLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 80 (258)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred EEEEEEEEEEEC-CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCCC
T ss_conf 699997899989-9998815066886997999998999829999999974766789977999999336775200002351
Q ss_pred -----CCCCCEEEECCCCCCCCC-CHHHHHCCCC----CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHH
Q ss_conf -----886727997089988975-3656432899----747899999663178865334454666899999976793123
Q 001446 906 -----GSGCGIFYVPQRPYTCLG-TLRDQIIYPL----SREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL 975 (1075)
Q Consensus 906 -----~~r~~i~~VpQdp~LF~G-TIr~NL~yp~----~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~ 975 (1075)
..|.++++|+|+|.+|+. |+++|+.++. .....+ .++.+.++++.+++.+.
T Consensus 81 ~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~-------------------~~~~~~~~l~~~~l~~~ 141 (258)
T d1b0ua_ 81 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHD-------------------ARERALKYLAKVGIDER 141 (258)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHH-------------------HHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHH-------------------HHHHHHHHHHHCCCCHH
T ss_conf 76799974544899833231411010213656578762999899-------------------99999999998299524
Q ss_pred H-HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH---HCCCEEEEECCCCC-
Q ss_conf 3-310037755566433799368879999997540797867615688999889999999987---34966999437989-
Q 001446 976 L-EREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK---DMGITFVTSSQRPA- 1050 (1075)
Q Consensus 976 ~-~~~~~G~dt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~~e~~i~~~~~---~~~~TvI~IaHRl~- 1050 (1075)
. ++. ...||||||||++|||||..+|++|||||||++||+.+...|.++++ +.|+|+|.|+|++.
T Consensus 142 ~~~~~----------p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~ 211 (258)
T d1b0ua_ 142 AQGKY----------PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF 211 (258)
T ss_dssp HHTSC----------GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHH
T ss_pred HHCCC----------CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHH
T ss_conf 43068----------22056778889899999843998788524555688788889987655410368833899489999
Q ss_pred CHHHCCCEEEEECCC
Q ss_conf 530012138987388
Q 001446 1051 LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1051 ~i~~~~~~l~~~~g~ 1065 (1075)
...+.|+++.+.+|.
T Consensus 212 ~~~~adri~vm~~G~ 226 (258)
T d1b0ua_ 212 ARHVSSHVIFLHQGK 226 (258)
T ss_dssp HHHHCSEEEEEETTE
T ss_pred HHHHCCEEEEEECCE
T ss_conf 998699999997999
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2e-35 Score=287.92 Aligned_cols=204 Identities=19% Similarity=0.230 Sum_probs=163.2
Q ss_pred CCEEEEEEEEECCCCCEEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCC------C-CCCCE
Q ss_conf 6199995899959997014510188918998999959860699999999579999942799699683------3-34648
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEI 252 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~-~~~~i 252 (1075)
..++++|+++.|. +..+|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .+..+
T Consensus 5 ~~Lev~~l~k~yg-~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi 83 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred EEEEEEEEEEEEC-CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCC
T ss_conf 0799961899989-988883025788899799999999985999999996788888038984244344660888887423
Q ss_pred EEECCCCCCCCC-CHHHHHCCCCCCCCCCCCCCHHHHHHHHHHC-CCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 999078999857-7889851799777656768999999999976-99057721999856678998793499999999987
Q 001446 253 FYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNV-DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 330 (1075)
Q Consensus 253 ~~v~Q~p~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~g~~LSgGqkqRi~lARal 330 (1075)
+|+||++.++.. |++||+.++...... .......+.+++..+ ++.+..++.+ ..||||||||++||||+
T Consensus 84 ~~~~q~~~l~~~ltv~en~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~LSGG~~Qrv~iAraL 154 (240)
T d1ji0a_ 84 ALVPEGRRIFPELTVYENLMMGAYNRKD-KEGIKRDLEWIFSLFPRLKERLKQLG--------GTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCC-SSHHHHHHHHHHHHCHHHHTTTTSBS--------SSSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHCHHHHHHCCH--------HHCCHHHHHHHHHHHHH
T ss_conf 5567655457763699999988873278-88999999999987417688875854--------33899999999999999
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHH---CCCEEEEEECCHHHH-HHCCEEEEECCCCCEEEECC
Q ss_conf 179979998579979999999999999981---397599991692168-61794999918985778327
Q 001446 331 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGEGEWRVHDK 395 (1075)
Q Consensus 331 ~~~p~illlDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~-~~~d~i~~l~~~~~~~~~~~ 395 (1075)
+.+|++++|||||++||+.+..++++.+++ .|+|+|++||++..+ ..||++++|++ |..+..+
T Consensus 155 ~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~--G~iv~~g 221 (240)
T d1ji0a_ 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLET--GQIVLEG 221 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEET--TEEEEEE
T ss_pred HHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC--CEEEEEC
T ss_conf 829987400398867999999999999999996899899995889999996999999989--9999984
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.1e-36 Score=292.57 Aligned_cols=204 Identities=23% Similarity=0.298 Sum_probs=164.7
Q ss_pred CEEEEEEEEECCCCCEEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCC------C-CCCCEE
Q ss_conf 199995899959997014510188918998999959860699999999579999942799699683------3-346489
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEIF 253 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~-~~~~i~ 253 (1075)
.++++|++..|. +..+|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. . .+..++
T Consensus 4 iL~v~nlsk~yg-~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~ 82 (254)
T d1g6ha_ 4 ILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 82 (254)
T ss_dssp EEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred EEEEEEEEEEEC-CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCCC
T ss_conf 699977899979-9688712179988997999999999849999999977976887379999996640569999983387
Q ss_pred EECCCCCCCC-CCHHHHHCCCCCCCCC-------------CCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 9907899985-7788985179977765-------------6768999999999976990577219998566789987934
Q 001446 254 YVPQRPYTAV-GTLRDQLIYPLTSDQE-------------VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLG 319 (1075)
Q Consensus 254 ~v~Q~p~l~~-~ti~~ni~~~~~~~~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgG 319 (1075)
|+||+|.++. -|+.||+.++...... ......++..++++.+++.+..++.+ ..||||
T Consensus 83 ~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG 154 (254)
T d1g6ha_ 83 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA--------GELSGG 154 (254)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG--------GGSCHH
T ss_pred CCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCH--------HHCCCH
T ss_conf 257764247887423214301333034504566542135328999999999987619630205953--------569918
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH---HCCCEEEEEECCHHHH-HHCCEEEEECCCCCEEEECC
Q ss_conf 9999999998717997999857997999999999999998---1397599991692168-61794999918985778327
Q 001446 320 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALV-AFHDVVLSLDGEGEWRVHDK 395 (1075)
Q Consensus 320 qkqRi~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~---~~~~t~i~vtH~~~~~-~~~d~i~~l~~~~~~~~~~~ 395 (1075)
||||++||||++.+|+++||||||++||+.....+++.++ +.|.|+|++||+++.+ ..||+|++|++ |..+..+
T Consensus 155 ~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~--G~iv~~g 232 (254)
T d1g6ha_ 155 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFN--GQIIAEG 232 (254)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEET--TEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC--CEEEEEE
T ss_conf 88899999999759272324397656999999999999999997899899994769999986999999969--9899996
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6e-36 Score=292.05 Aligned_cols=214 Identities=20% Similarity=0.261 Sum_probs=163.4
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC---CCCCCEE
Q ss_conf 5388100563798533232342365089869998499995889999992899999882764898775345---8867279
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIF 912 (1075)
Q Consensus 836 ~I~f~~Vsf~yp~~~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~---~~r~~i~ 912 (1075)
-++++||+.+|. ...+|+||||+|++||.+||+||+|||||||+++|.|+++|++|+|.++|.|+...+ ..+.+|+
T Consensus 4 iL~v~nlsk~yg-~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~ 82 (254)
T d1g6ha_ 4 ILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 82 (254)
T ss_dssp EEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred EEEEEEEEEEEC-CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCCC
T ss_conf 699977899979-9688712179988997999999999849999999977976887379999996640569999983387
Q ss_pred EECCCCCCCCC-CHHHHHCCCCC-HHHHHHHHH-HHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCC
Q ss_conf 97089988975-36564328997-478999996-6317886533445466689999997679312333100377555664
Q 001446 913 YVPQRPYTCLG-TLRDQIIYPLS-REEAELRAL-KLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 989 (1075)
Q Consensus 913 ~VpQdp~LF~G-TIr~NL~yp~~-~~~~~~~a~-~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~~~ 989 (1075)
++||+|.+|+. |++||+.++.. ......... ...... ..+.....+.++++.+++....+. .
T Consensus 83 ~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~----------~ 147 (254)
T d1g6ha_ 83 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP-----KEEEMVEKAFKILEFLKLSHLYDR----------K 147 (254)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCC-----CCHHHHHHHHHHHHHTTCGGGTTS----------B
T ss_pred CCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCC-----CHHHHHHHHHHHHHHCCCCHHCCC----------C
T ss_conf 2577642478874232143013330345045665421353-----289999999999876196302059----------5
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH---HCCCEEEEECCCCC-CHHHCCCEEEEECCC
Q ss_conf 33799368879999997540797867615688999889999999987---34966999437989-530012138987388
Q 001446 990 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK---DMGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 990 g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~~e~~i~~~~~---~~~~TvI~IaHRl~-~i~~~~~~l~~~~g~ 1065 (1075)
...||||||||++|||||+.+|++|||||||++||+.+.+.+.+.++ +.|+|+|.|+|++. ..++.|+++.+.+|.
T Consensus 148 ~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~ 227 (254)
T d1g6ha_ 148 AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQ 227 (254)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 35699188889999999975927232439765699999999999999999789989999476999998699999996998
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=8.8e-36 Score=290.77 Aligned_cols=198 Identities=19% Similarity=0.224 Sum_probs=167.4
Q ss_pred CCEEEEEEEEECCCCCEEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCC-----CCCCCCEEE
Q ss_conf 619999589995999701451018891899899995986069999999957999994279969968-----333464899
Q 001446 180 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFY 254 (1075)
Q Consensus 180 ~~i~~~~v~~~~~~~~~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-----~~~~~~i~~ 254 (1075)
+.|.++|++..|. ++.+|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|
T Consensus 1 gaI~v~nl~k~yg-~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~ 79 (238)
T d1vpla_ 1 GAVVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 79 (238)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CCEEEEEEEEEEC-CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHEEE
T ss_conf 9789995899999-999980625688489799999999999999999996698878887999867244683988721867
Q ss_pred ECCCCCCCC-CCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 907899985-7788985179977765676899999999997699057721999856678998793499999999987179
Q 001446 255 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 333 (1075)
Q Consensus 255 v~Q~p~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRi~lARal~~~ 333 (1075)
+||++.++. -|++||+.+.............+.+..+++.+++.+..+..+ ..||||||||++||||++.+
T Consensus 80 vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~lSgG~~qrv~iA~al~~~ 151 (238)
T d1vpla_ 80 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRV--------STYSKGMVRKLLIARALMVN 151 (238)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBG--------GGCCHHHHHHHHHHHHHTTC
T ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHH--------HHCCHHHHHHHHHHHHHHCC
T ss_conf 5001546878667788898998617998999999999998679788885045--------33799898999999998659
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHH---CCCEEEEEECCHHHHH-HCCEEEEECC
Q ss_conf 979998579979999999999999981---3975999916921686-1794999918
Q 001446 334 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 386 (1075)
Q Consensus 334 p~illlDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~-~~d~i~~l~~ 386 (1075)
|++++|||||++||+.+.+.+++.+++ .|+|+|++||+++.+. .||++++|++
T Consensus 152 p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~ 208 (238)
T d1vpla_ 152 PRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHN 208 (238)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEET
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC
T ss_conf 998873379889798999999999999996599899995989999996999999989
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.4e-35 Score=289.19 Aligned_cols=201 Identities=21% Similarity=0.287 Sum_probs=163.3
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCC-CCCCCCEEE
Q ss_conf 9538810056379853323234236508986999849999588999999289999988276489877534-588672799
Q 001446 835 DSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEE-AGSGCGIFY 913 (1075)
Q Consensus 835 g~I~f~~Vsf~yp~~~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~-~~~r~~i~~ 913 (1075)
|.|+++|++..|. ...||+|+||+|++||.+||+||+|||||||+++|.|++.|++|+|.++|.|+... ...|..+++
T Consensus 1 gaI~v~nl~k~yg-~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~ 79 (238)
T d1vpla_ 1 GAVVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 79 (238)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CCEEEEEEEEEEC-CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHEEE
T ss_conf 9789995899999-999980625688489799999999999999999996698878887999867244683988721867
Q ss_pred ECCCCCCCCC-CHHHHHCCCCC---HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCC
Q ss_conf 7089988975-36564328997---4789999966317886533445466689999997679312333100377555664
Q 001446 914 VPQRPYTCLG-TLRDQIIYPLS---REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNW 989 (1075)
Q Consensus 914 VpQdp~LF~G-TIr~NL~yp~~---~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~~~ 989 (1075)
|||++.+|.. |++||+.+... ..... .+..+...++.+++.......
T Consensus 80 vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~-------------------~~~~~~~~l~~~~l~~~~~~~---------- 130 (238)
T d1vpla_ 80 LPEEAGAYRNMQGIEYLRFVAGFYASSSSE-------------------IEEMVERATEIAGLGEKIKDR---------- 130 (238)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHH-------------------HHHHHHHHHHHHCCGGGGGSB----------
T ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCCHHH-------------------HHHHHHHHHHHCCCHHHHHHH----------
T ss_conf 500154687866778889899861799899-------------------999999999867978888504----------
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH---HCCCEEEEECCCCC-CHHHCCCEEEEECCC
Q ss_conf 33799368879999997540797867615688999889999999987---34966999437989-530012138987388
Q 001446 990 EDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK---DMGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 990 g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~~e~~i~~~~~---~~~~TvI~IaHRl~-~i~~~~~~l~~~~g~ 1065 (1075)
-..||||||||++|||||+.+|+||+|||||++||+.+.+.+.++++ +.|.|+|.++|.+. ...+.|+++.+.+|+
T Consensus 131 ~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~ 210 (238)
T d1vpla_ 131 VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGT 210 (238)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTE
T ss_pred HHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 53379989899999999865999887337988979899999999999999659989999598999999699999998999
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=4e-36 Score=293.40 Aligned_cols=199 Identities=20% Similarity=0.280 Sum_probs=158.5
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC---CCCCCEE
Q ss_conf 5388100563798533232342365089869998499995889999992899999882764898775345---8867279
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA---GSGCGIF 912 (1075)
Q Consensus 836 ~I~f~~Vsf~yp~~~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~---~~r~~i~ 912 (1075)
-++++|++.+|. ...+|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.++|.|+...+ ..|..++
T Consensus 6 ~Lev~~l~k~yg-~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~ 84 (240)
T d1ji0a_ 6 VLEVQSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred EEEEEEEEEEEC-CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCCC
T ss_conf 799961899989-9888830257888997999999999859999999967888880389842443446608888874235
Q ss_pred EECCCCCCCCC-CHHHHHCCCCC---HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHC-CCHHHHHHHCCCCCCCC
Q ss_conf 97089988975-36564328997---478999996631788653344546668999999767-93123331003775556
Q 001446 913 YVPQRPYTCLG-TLRDQIIYPLS---REEAELRALKLHGKGEKLVDTTNILDSYLKTILEGV-RLSYLLEREEVGWDANL 987 (1075)
Q Consensus 913 ~VpQdp~LF~G-TIr~NL~yp~~---~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~-~l~~~~~~~~~G~dt~~ 987 (1075)
++||++.+|+. |+++|+.++.. ..+... ..+..+++.. ++.... +
T Consensus 85 ~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~~~-------~--- 134 (240)
T d1ji0a_ 85 LVPEGRRIFPELTVYENLMMGAYNRKDKEGIK--------------------RDLEWIFSLFPRLKERL-------K--- 134 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHH--------------------HHHHHHHHHCHHHHTTT-------T---
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHH--------------------HHHHHHHHHHHCHHHHH-------H---
T ss_conf 56765545776369999998887327888999--------------------99999998741768887-------5---
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH---HCCCEEEEECCCCC-CHHHCCCEEEEEC
Q ss_conf 6433799368879999997540797867615688999889999999987---34966999437989-5300121389873
Q 001446 988 NWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK---DMGITFVTSSQRPA-LIPFHSLELRLID 1063 (1075)
Q Consensus 988 ~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEATSaLD~~~e~~i~~~~~---~~~~TvI~IaHRl~-~i~~~~~~l~~~~ 1063 (1075)
.....||||||||++|||||+.+|++|+|||||++||+.+...+.+.++ +.|+|+|.|+|.+. ..++.|+++.+.+
T Consensus 135 ~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~ 214 (240)
T d1ji0a_ 135 QLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLET 214 (240)
T ss_dssp SBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEET
T ss_pred CCHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC
T ss_conf 85433899999999999999829987400398867999999999999999996899899995889999996999999989
Q ss_pred CC
Q ss_conf 88
Q 001446 1064 GE 1065 (1075)
Q Consensus 1064 g~ 1065 (1075)
|+
T Consensus 215 G~ 216 (240)
T d1ji0a_ 215 GQ 216 (240)
T ss_dssp TE
T ss_pred CE
T ss_conf 99
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.7e-35 Score=288.63 Aligned_cols=187 Identities=22% Similarity=0.338 Sum_probs=157.3
Q ss_pred EEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCC----CCCCCCEEEECCCCCCCCC-CHHHHH
Q ss_conf 01451018891899899995986069999999957999994279969968----3334648999078999857-788985
Q 001446 196 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQRPYTAVG-TLRDQL 270 (1075)
Q Consensus 196 ~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~----~~~~~~i~~v~Q~p~l~~~-ti~~ni 270 (1075)
..+ |+||++. +++++|+||||||||||+++|+|+.+|++|+|.++|.+ ...+++|+||||+|.+++. |++||+
T Consensus 14 ~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl 91 (240)
T d2onka1 14 FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHH
T ss_conf 999-9999749-97999997999809999999973999896289999999886998992852252314435220155766
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH
Q ss_conf 17997776567689999999999769905772199985667899879349999999998717997999857997999999
Q 001446 271 IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 350 (1075)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRi~lARal~~~p~illlDEpts~LD~~~ 350 (1075)
.|+..... ....++++.++++.+++.++.++.| ..||||||||++||||++.+|++++|||||++||+.+
T Consensus 92 ~~~l~~~~--~~~~~~~v~~~l~~~gl~~~~~~~~--------~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~ 161 (240)
T d2onka1 92 AYGLRNVE--RVERDRRVREMAEKLGIAHLLDRKP--------ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKT 161 (240)
T ss_dssp HTTCTTSC--HHHHHHHHHHHHHTTTCTTTTTCCG--------GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHH
T ss_pred HHHHCCCC--HHHHHHHHHHHHHHCCCHHHHHCCH--------HHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHH
T ss_conf 65323367--7889999999998638375665794--------4489999899999877751677067528655588799
Q ss_pred HHHHHHHHHH----CCCEEEEEECCHHHH-HHCCEEEEECCCCCEEEECCC
Q ss_conf 9999999981----397599991692168-617949999189857783278
Q 001446 351 EERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGEGEWRVHDKR 396 (1075)
Q Consensus 351 ~~~i~~~l~~----~~~t~i~vtH~~~~~-~~~d~i~~l~~~~~~~~~~~~ 396 (1075)
...+++.+++ .+.|+|++||+++.+ ..||++++|++ |..++.+.
T Consensus 162 ~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~--G~ii~~G~ 210 (240)
T d2onka1 162 KGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLN--GRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEET--TEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC--CEEEEEEC
T ss_conf 99999999999874397699981899999996999999989--99999906
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=6e-35 Score=284.30 Aligned_cols=181 Identities=23% Similarity=0.346 Sum_probs=154.1
Q ss_pred CCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCC-CHHHHHCCCC
Q ss_conf 342365089869998499995889999992899999882764898775345886727997089988975-3656432899
Q 001446 855 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLG-TLRDQIIYPL 933 (1075)
Q Consensus 855 ~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~~~r~~i~~VpQdp~LF~G-TIr~NL~yp~ 933 (1075)
|+||++. +|.++|+||||||||||+++|.|+.+|++|+|.++|.|+...+..|.+|+||||+|.||+. |++||+.+|.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l 95 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGL 95 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTC
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHHHH
T ss_conf 9999749-979999979998099999999739998962899999998869989928522523144352201557666532
Q ss_pred CH-HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 74-78999996631788653344546668999999767931233310037755566433799368879999997540797
Q 001446 934 SR-EEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPK 1012 (1075)
Q Consensus 934 ~~-~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~~~g~~LSgGQrQrlaiARAlLr~p~ 1012 (1075)
.. ...+ .++.+.++++.+++.++.++.| ..||||||||++||||++++|+
T Consensus 96 ~~~~~~~-------------------~~~~v~~~l~~~gl~~~~~~~~----------~~LSGG~kQRvaiAral~~~P~ 146 (240)
T d2onka1 96 RNVERVE-------------------RDRRVREMAEKLGIAHLLDRKP----------ARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp TTSCHHH-------------------HHHHHHHHHHTTTCTTTTTCCG----------GGSCHHHHHHHHHHHHHTTCCS
T ss_pred CCCCHHH-------------------HHHHHHHHHHHCCCHHHHHCCH----------HHCCHHHHHHHHHHHHHHCCCC
T ss_conf 3367788-------------------9999999998638375665794----------4489999899999877751677
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH----HCCCEEEEECCCCC-CHHHCCCEEEEECCC
Q ss_conf 867615688999889999999987----34966999437989-530012138987388
Q 001446 1013 FGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPA-LIPFHSLELRLIDGE 1065 (1075)
Q Consensus 1013 ILiLDEATSaLD~~~e~~i~~~~~----~~~~TvI~IaHRl~-~i~~~~~~l~~~~g~ 1065 (1075)
+|+||||||+||+.+...+.+.++ +.++|+|.|+|.+. ..++.|+++.+.+|+
T Consensus 147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ 204 (240)
T d2onka1 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGR 204 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 0675286555887999999999999987439769998189999999699999998999
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=7.7e-32 Score=260.07 Aligned_cols=189 Identities=19% Similarity=0.292 Sum_probs=110.3
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEEC
Q ss_conf 53881005637985332323423650898699984999958899999928999998827648987753458867279970
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 915 (1075)
Q Consensus 836 ~I~f~~Vsf~yp~~~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~~~r~~i~~Vp 915 (1075)
.|+++|+++.|. .+||+|+||+|++||.+||+||+|||||||+++|.|+++|.+|+|.++|.+++.. +.+++++|
T Consensus 2 ~lev~~ls~~y~--~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~---~~~i~~~~ 76 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV---KGKIFFLP 76 (200)
T ss_dssp EEEEEEEEEESS--SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGG---GGGEEEEC
T ss_pred EEEEEEEEEEEC--CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHH---CCCEEEEE
T ss_conf 599998999939--9288420889859989999999997199999999662056778899998962673---67089995
Q ss_pred CCCCCCCC-CHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 89988975-36564328997478999996631788653344546668999999767931233310037755566433799
Q 001446 916 QRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILS 994 (1075)
Q Consensus 916 Qdp~LF~G-TIr~NL~yp~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~~~g~~LS 994 (1075)
|++.++.. |+++|+.+. ....+ ....+.++.++++.+++.++ +. .-..||
T Consensus 77 ~~~~~~~~~t~~~~l~~~----------~~~~~--------~~~~~~~~~~~l~~~~~~~~--------~~---~~~~LS 127 (200)
T d1sgwa_ 77 EEIIVPRKISVEDYLKAV----------ASLYG--------VKVNKNEIMDALESVEVLDL--------KK---KLGELS 127 (200)
T ss_dssp SSCCCCTTSBHHHHHHHH----------HHHTT--------CCCCHHHHHHHHHHTTCCCT--------TS---BGGGSC
T ss_pred ECCCCCCCCCHHHHHHHH----------HHHCC--------CCCCHHHHHHHHHHCCCCCC--------CC---CCCCCC
T ss_conf 013578882899999999----------97548--------86379999999987488563--------01---268689
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH----HCCCEEEEECCCCCCHHHCCCEEEE
Q ss_conf 368879999997540797867615688999889999999987----3496699943798953001213898
Q 001446 995 LGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK----DMGITFVTSSQRPALIPFHSLELRL 1061 (1075)
Q Consensus 995 gGQrQrlaiARAlLr~p~ILiLDEATSaLD~~~e~~i~~~~~----~~~~TvI~IaHRl~~i~~~~~~l~~ 1061 (1075)
||||||++||||++++|+++||||||++||+++...+.+.+. +.+.++|+..|.+ .+.|.+.++
T Consensus 128 gG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l---~~~D~~~~l 195 (200)
T d1sgwa_ 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL---SYCDVNENL 195 (200)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC---TTSSEEEEG
T ss_pred CCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECHH---HHCCHHHHE
T ss_conf 71888899999886499899986862016999999999999999867999999991625---441612340
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.3e-32 Score=264.21 Aligned_cols=189 Identities=21% Similarity=0.350 Sum_probs=151.6
Q ss_pred CEEEEEEEEECCCCCEEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCC-CCCCCCEEEECCCC
Q ss_conf 19999589995999701451018891899899995986069999999957999994279969968-33346489990789
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRP 259 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~-~~~~~~i~~v~Q~p 259 (1075)
.|+++|+++.|. +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ...+.+++|+||++
T Consensus 2 ~lev~~ls~~y~--~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~ 79 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 79 (200)
T ss_dssp EEEEEEEEEESS--SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred EEEEEEEEEEEC--CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEEEEECC
T ss_conf 599998999939--928842088985998999999999719999999966205677889999896267367089995013
Q ss_pred CCCCC-CHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 99857-78898517997776567689999999999769905772199985667899879349999999998717997999
Q 001446 260 YTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 338 (1075)
Q Consensus 260 ~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRi~lARal~~~p~ill 338 (1075)
.++.. |+.+++.+...... ....+.++.++++.+++.++..+ + ..||||||||++||||++.+|+++|
T Consensus 80 ~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~-~--------~~LSgG~~qrv~ia~al~~~~~lll 148 (200)
T d1sgwa_ 80 IVPRKISVEDYLKAVASLYG--VKVNKNEIMDALESVEVLDLKKK-L--------GELSQGTIRRVQLASTLLVNAEIYV 148 (200)
T ss_dssp CCCTTSBHHHHHHHHHHHTT--CCCCHHHHHHHHHHTTCCCTTSB-G--------GGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred CCCCCCCHHHHHHHHHHHCC--CCCCHHHHHHHHHHCCCCCCCCC-C--------CCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 57888289999999997548--86379999999987488563012-6--------8689718888999998864998999
Q ss_pred EECCCCCCCHHHHHHHHHHHHH----CCCEEEEEECCHHHHHHCCEEEEEC
Q ss_conf 8579979999999999999981----3975999916921686179499991
Q 001446 339 LDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLD 385 (1075)
Q Consensus 339 lDEpts~LD~~~~~~i~~~l~~----~~~t~i~vtH~~~~~~~~d~i~~l~ 385 (1075)
|||||++||+.+...+++.+.+ .+.++|..+|++ .+||.+..|.
T Consensus 149 lDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l---~~~D~~~~l~ 196 (200)
T d1sgwa_ 149 LDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL---SYCDVNENLH 196 (200)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC---TTSSEEEEGG
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECHH---HHCCHHHHEE
T ss_conf 86862016999999999999999867999999991625---4416123401
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=2.6e-31 Score=255.93 Aligned_cols=187 Identities=21% Similarity=0.257 Sum_probs=145.2
Q ss_pred CEEEEEEEEECCCCCEEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCC------CCCCCEEE
Q ss_conf 199995899959997014510188918998999959860699999999579999942799699683------33464899
Q 001446 181 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEIFY 254 (1075)
Q Consensus 181 ~i~~~~v~~~~~~~~~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~------~~~~~i~~ 254 (1075)
.++++||+. ...++++||+|++||+++|+||||||||||+++|+|+. +.+|+|.++|.+. .+....+|
T Consensus 3 il~~~dv~~-----~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~ 76 (231)
T d1l7vc_ 3 VMQLQDVAE-----STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAY 76 (231)
T ss_dssp EEEEEEECC-----TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEE
T ss_pred EEEEECCCC-----CCEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCEE
T ss_conf 999987415-----71555888899489899999899980999999994887-995599999999986998999864024
Q ss_pred ECCCCCC-CCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf 9078999-85778898517997776567689999999999769905772199985667899879349999999998717-
Q 001446 255 VPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH- 332 (1075)
Q Consensus 255 v~Q~p~l-~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRi~lARal~~- 332 (1075)
++|.... +..++.+++.+.... ....+.+.++++.+++.+..++.+ ..||||||||++|||+++.
T Consensus 77 ~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~--------~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 77 LSQQQTPPFATPVWHYLTLHQHD-----KTRTELLNDVAGALALDDKLGRST--------NQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp ECSCCCCCSSCBHHHHHHHHCSC-----TTCHHHHHHHHHHTTCTTTTTSBG--------GGCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCHHHHHHHCCCH-----HHHHHHHHHHHHHCCCHHHHCCCH--------HHCCHHHHHHHHHHHHHHHH
T ss_conf 51213577442098876410014-----668999999998659876767684--------45699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHH---HCCCEEEEEECCHHHH-HHCCEEEEECC
Q ss_conf ------997999857997999999999999998---1397599991692168-61794999918
Q 001446 333 ------KPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALV-AFHDVVLSLDG 386 (1075)
Q Consensus 333 ------~p~illlDEpts~LD~~~~~~i~~~l~---~~~~t~i~vtH~~~~~-~~~d~i~~l~~ 386 (1075)
+|++++|||||++||+.....+++.++ +.|.|+|++||+++.+ ..||++++|++
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~ 207 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKG 207 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEET
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC
T ss_conf 7133899889997187777898999999999999986799999996779999997999999979
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=2.1e-30 Score=248.90 Aligned_cols=193 Identities=21% Similarity=0.263 Sum_probs=151.9
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCC--CCCCCEEE
Q ss_conf 5388100563798533232342365089869998499995889999992899999882764898775345--88672799
Q 001446 836 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA--GSGCGIFY 913 (1075)
Q Consensus 836 ~I~f~~Vsf~yp~~~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~--~~r~~i~~ 913 (1075)
-++++||+.+| +|+|+||+|++||.+||+||||||||||+++|.|++ |.+|+|.++|.|+...+ .++...++
T Consensus 3 il~~~dv~~~~-----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~ 76 (231)
T d1l7vc_ 3 VMQLQDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAY 76 (231)
T ss_dssp EEEEEEECCTT-----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEE
T ss_pred EEEEECCCCCC-----EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCEE
T ss_conf 99998741571-----555888899489899999899980999999994887-995599999999986998999864024
Q ss_pred ECCCCCC-CCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 7089988-975365643289974789999966317886533445466689999997679312333100377555664337
Q 001446 914 VPQRPYT-CLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI 992 (1075)
Q Consensus 914 VpQdp~L-F~GTIr~NL~yp~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~~~g~~ 992 (1075)
++|++.. |..++.+++...... ....+.+.++++.+++.+..... ...
T Consensus 77 ~~~~~~~~~~~~v~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~~~~~~----------~~~ 125 (231)
T d1l7vc_ 77 LSQQQTPPFATPVWHYLTLHQHD---------------------KTRTELLNDVAGALALDDKLGRS----------TNQ 125 (231)
T ss_dssp ECSCCCCCSSCBHHHHHHHHCSC---------------------TTCHHHHHHHHHHTTCTTTTTSB----------GGG
T ss_pred EECCCCCCCCCCHHHHHHHCCCH---------------------HHHHHHHHHHHHHCCCHHHHCCC----------HHH
T ss_conf 51213577442098876410014---------------------66899999999865987676768----------445
Q ss_pred CCHHHHHHHHHHHHHHC-------CCCEEEEECCCCCCCHHHHHHHHHHHH---HCCCEEEEECCCCC-CHHHCCCEEEE
Q ss_conf 99368879999997540-------797867615688999889999999987---34966999437989-53001213898
Q 001446 993 LSLGEQQRLGMARLFFH-------KPKFGILDECTNATSVDVEEQLYRLAK---DMGITFVTSSQRPA-LIPFHSLELRL 1061 (1075)
Q Consensus 993 LSgGQrQrlaiARAlLr-------~p~ILiLDEATSaLD~~~e~~i~~~~~---~~~~TvI~IaHRl~-~i~~~~~~l~~ 1061 (1075)
||||||||++||||+++ +|+++||||||++||+.....+.++++ +.|+|+|+++|++. ..++.|+++.+
T Consensus 126 LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl 205 (231)
T d1l7vc_ 126 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLL 205 (231)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBE
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEE
T ss_conf 69988999999999985171338998899971877778989999999999999867999999967799999979999999
Q ss_pred ECCC
Q ss_conf 7388
Q 001446 1062 IDGE 1065 (1075)
Q Consensus 1062 ~~g~ 1065 (1075)
.+|+
T Consensus 206 ~~G~ 209 (231)
T d1l7vc_ 206 KGGK 209 (231)
T ss_dssp ETTE
T ss_pred ECCE
T ss_conf 7998
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.36 E-value=2.4e-08 Score=77.17 Aligned_cols=248 Identities=14% Similarity=0.124 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999996999999999999762588-6177715899999974306888999999999996534576899
Q 001446 547 ASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVD 625 (1075)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~l~~~-~~~~~~~~~~~~~~~~~rl~~D~~~~~~~l~~~~~~~i~~~~~ 625 (1075)
...+..+...+...+...+....+..+++++.++.+ .+++. ...++..+|+++|++.+...+......++..++.
T Consensus 68 ~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~----~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 143 (319)
T d3b60a2 68 LRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK----QSTGTLLSRITYDSEQVASSSSGALITVVREGAS 143 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHH----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 764533546654434310001100047777650101111023----3322111112121210000111112001123344
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999999994161469999999999999999843654320478776100025689999875687640399089999999
Q 001446 626 ILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIE 705 (1075)
Q Consensus 626 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 705 (1075)
++...+.+....... ..+++...++.........++..+...+..+..+.......+...+.++++.++.++.+.+.++
T Consensus 144 ~i~~~~~~~~~~~~l-~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~ 222 (319)
T d3b60a2 144 IIGLFIMMFYYSWQL-SIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFD 222 (319)
T ss_dssp HHHHHHHHHHHTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHH
T ss_conf 566888887652002-1025668999999887666687787898876445677887776248723531110102456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998775556888873102468988999999861153011111567899999999999999877999
Q 001446 706 SRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGD 785 (1075)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 785 (1075)
+..++..+...+..+..........+. ..+..+++++++....... ..+.|.+.. +..+......++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~g~~~~~~g--~it~g~l~~----~~~~~~~~~~pl~~ 291 (319)
T d3b60a2 223 KVSNKMRLQGMKMVSASSISDPIIQLI-----ASLALAFVLYAASFPSVMD--SLTAGTITV----VFSSMIALMRPLKS 291 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHSSSTTS--SSHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHH-----HHHHHHHHHHHHHHHHHCC--CCCHHHHHH----HHHHHHHHHHHHHH
T ss_conf 653135677888887777406401000-----0002379999999999809--978999999----99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998721454489899998
Q 001446 786 ILELHRKFVELSGGINRIFELEELL 810 (1075)
Q Consensus 786 ~~~~~~~~~~~~~s~~Ri~~~~~~~ 810 (1075)
+......+.+...+.+|+.+++|.+
T Consensus 292 l~~~~~~~~~~~~s~~Ri~elld~~ 316 (319)
T d3b60a2 292 LTNVNAQFQRGMAACQTLFAILDSE 316 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999999999996699
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.32 E-value=9.3e-14 Score=119.34 Aligned_cols=69 Identities=7% Similarity=-0.030 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCC--CHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEE
Q ss_conf 7934999999999871799799985799799--99999999999981397599991692168617949999
Q 001446 316 LSLGEQQRLGMARLFYHKPKFAILDECTSAV--TTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSL 384 (1075)
Q Consensus 316 LSgGqkqRi~lARal~~~p~illlDEpts~L--D~~~~~~i~~~l~~~~~t~i~vtH~~~~~~~~d~i~~l 384 (1075)
+++|+++|.++++++..+|+++++|||.... +......+.+.++..+.++|+++|+......++++..+
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~~~~~~~i~~~ 152 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCEEEEE
T ss_conf 53201378999999740997423027773100457999999987505797899997447789863659987
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.16 E-value=6.9e-13 Score=112.58 Aligned_cols=147 Identities=12% Similarity=0.034 Sum_probs=97.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCC---EEEECCCCCCCCCCHHHHHCCCCCHHHHHH
Q ss_conf 86999849999588999999289999988276489877534588672---799708998897536564328997478999
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCG---IFYVPQRPYTCLGTLRDQIIYPLSREEAEL 940 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~~~r~~---i~~VpQdp~LF~GTIr~NL~yp~~~~~~~~ 940 (1075)
-||+|+||+|||||||++.+.+++++..|.+.+++.+..... .+.. ..+.++.+.++..+...+.....
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 72 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETK-KRTGFRIITTEGKKKIFSSKFFTSKKLVGS------- 72 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC-------CCEEEEEETTCCEEEEEETTCCCSSEETT-------
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_conf 989999899938999999998148888646998771328888-765311233667778875411345544302-------
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 99663178865334454666899999976793123331003775556643379936887999999754079786761568
Q 001446 941 RALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECT 1020 (1075)
Q Consensus 941 ~a~~~~~~~~~~~~~~~~~d~~i~~~l~~~~l~~~~~~~~~G~dt~~~~g~~LSgGQrQrlaiARAlLr~p~ILiLDEAT 1020 (1075)
. ..+.. ...+|+|++|+.++++++.++|+++++||++
T Consensus 73 ---------------~-~~~~~---------------------------~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~ 109 (178)
T d1ye8a1 73 ---------------Y-GVNVQ---------------------------YFEELAIPILERAYREAKKDRRKVIIIDEIG 109 (178)
T ss_dssp ---------------E-EECHH---------------------------HHHHHHHHHHHHHHHHHHHCTTCEEEECCCS
T ss_pred ---------------H-HCCCC---------------------------HHHHHHHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf ---------------3-03762---------------------------5665320137899999974099742302777
Q ss_pred CCC--CHHHHHHHHHHHHHCCCEEEEECCCCCCHHHCCCEEEE
Q ss_conf 899--98899999999873496699943798953001213898
Q 001446 1021 NAT--SVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRL 1061 (1075)
Q Consensus 1021 SaL--D~~~e~~i~~~~~~~~~TvI~IaHRl~~i~~~~~~l~~ 1061 (1075)
... +.+....+.+.+...++|+|.+.|+.....+.+++..+
T Consensus 110 ~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~~~~~~~i~~~ 152 (178)
T d1ye8a1 110 KMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp TTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCEEEEE
T ss_conf 3100457999999987505797899997447789863659987
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.16 E-value=2.2e-08 Score=77.50 Aligned_cols=235 Identities=12% Similarity=0.051 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999969999999999997625886177715899999974306888999999999996534576899999999999
Q 001446 555 IRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 634 (1075)
Q Consensus 555 ~~~~~~~~~~~~r~~l~~~l~~~~l~~~~~~~~~~~~~~~~~~~~rl~~D~~~~~~~l~~~~~~~i~~~~~~~~~~~~l~ 634 (1075)
......+...+.|.++++++++. +..|++ ....++..+|+++|++.+.......+..++..++.++...+.+.
T Consensus 85 ~~~~~~~~~~~lr~~l~~~ll~~---~~~~~~----~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 157 (323)
T d2hyda2 85 AQWTSNKILYDIRKKLYNHLQAL---SARFYA----NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMF 157 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS---CHHHHH----TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC---CCCCCC----CCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99999855677888876654023---321000----12221100011113321001113454201114665334654400
Q ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 94161469999999999999999843654320478776100025689999875687640399089999999999999999
Q 001446 635 ALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEH 714 (1075)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 714 (1075)
.+.... ..+..+..++.........++..+...+..+..+.......+...+.++|+.++.++.+.+.+.+..++..+.
T Consensus 158 ~~~~~l-~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~ 236 (323)
T d2hyda2 158 FLDVKL-TLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTR 236 (323)
T ss_dssp HHCTTT-HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCH
T ss_conf 001468-8899998877777776412333202677898999999787887559702346764111002330223111101
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998775556888873102468988999999861153011111567899999999999999877999999999999
Q 001446 715 SLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGELAHALRFLASVVSQSFLAFGDILELHRKFV 794 (1075)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1075)
..+..+............. .+...+.++++...... + ..+.|.+... ..+......++..+......+.
T Consensus 237 ~~k~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~-g-~~s~g~l~~~----~~~~~~l~~~l~~l~~~~~~~~ 305 (323)
T d2hyda2 237 ALKHTRWNAYSFAAINTVT-----DIGPIIVIGVGAYLAIS-G-SITVGTLAAF----VGYLELLFGPLRRLVASFTTLT 305 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-T-SCCHHHHHHH----HHTHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCC-----HHHHHHHHHHHHHHHHC-C-CCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5677652000011111012-----05589999999999984-9-9889999999----9999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 87214544898999
Q 001446 795 ELSGGINRIFELEE 808 (1075)
Q Consensus 795 ~~~~s~~Ri~~~~~ 808 (1075)
+...+.+|+.+++|
T Consensus 306 ~~~~s~~Ri~elLd 319 (323)
T d2hyda2 306 QSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999977
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.63 E-value=8.4e-07 Score=65.21 Aligned_cols=78 Identities=23% Similarity=0.251 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHH----HHCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEECCCCCCHHHCCCEEEEECCCC
Q ss_conf 99368879999997----5407978676156889998899999999873--49669994379895300121389873886
Q 001446 993 LSLGEQQRLGMARL----FFHKPKFGILDECTNATSVDVEEQLYRLAKD--MGITFVTSSQRPALIPFHSLELRLIDGEG 1066 (1075)
Q Consensus 993 LSgGQrQrlaiARA----lLr~p~ILiLDEATSaLD~~~e~~i~~~~~~--~~~TvI~IaHRl~~i~~~~~~l~~~~g~~ 1066 (1075)
+|.|||+++.++-. ...++.++++||+-++|++..+..+.+.+++ .+.-+|+.+|+..+++..|+++.+...+|
T Consensus 220 ~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~g 299 (308)
T d1e69a_ 220 LSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNG 299 (308)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEECC
T ss_conf 25777667777766556542267445543203357978999999999985548879999898899973242899999699
Q ss_pred CEEE
Q ss_conf 6388
Q 001446 1067 NWEL 1070 (1075)
Q Consensus 1067 ~~~~ 1070 (1075)
.=.+
T Consensus 300 ~s~i 303 (308)
T d1e69a_ 300 VSAI 303 (308)
T ss_dssp CEEE
T ss_pred EEEE
T ss_conf 9999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=1.9e-06 Score=62.42 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHH----HHCCCCEEEEECCCCCCCHHHHHHHHHHHHH---CCCEEEEECCCCCCHHHCCCEEEEE-C
Q ss_conf 799368879999997----5407978676156889998899999999873---4966999437989530012138987-3
Q 001446 992 ILSLGEQQRLGMARL----FFHKPKFGILDECTNATSVDVEEQLYRLAKD---MGITFVTSSQRPALIPFHSLELRLI-D 1063 (1075)
Q Consensus 992 ~LSgGQrQrlaiARA----lLr~p~ILiLDEATSaLD~~~e~~i~~~~~~---~~~TvI~IaHRl~~i~~~~~~l~~~-~ 1063 (1075)
.||||||.++++|=. .+.+++|++|||++++||+.....+.+.+.+ .++-+|+|+|+..++...|.++.+. +
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V~~~ 411 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYRQ 411 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999992
Q ss_pred CCCCEE
Q ss_conf 886638
Q 001446 1064 GEGNWE 1069 (1075)
Q Consensus 1064 g~~~~~ 1069 (1075)
+++|-+
T Consensus 412 ~~~g~s 417 (427)
T d1w1wa_ 412 QQENSS 417 (427)
T ss_dssp TTTTEE
T ss_pred CCCCEE
T ss_conf 799858
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.21 E-value=4.5e-06 Score=59.56 Aligned_cols=71 Identities=28% Similarity=0.403 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHH---CCCEEEEEECCHHHHHHCCEEEEE
Q ss_conf 98793499999999987----179979998579979999999999999981---397599991692168617949999
Q 001446 314 DELSLGEQQRLGMARLF----YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSL 384 (1075)
Q Consensus 314 ~~LSgGqkqRi~lARal----~~~p~illlDEpts~LD~~~~~~i~~~l~~---~~~t~i~vtH~~~~~~~~d~i~~l 384 (1075)
..||||||.+++||-.+ ..++++++||||+++||+.....+.+.+.+ .+.-+|++||++.....+|+++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.05 E-value=0.00049 Score=43.70 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999872145448989999863
Q 001446 784 GDILELHRKFVELSGGINRIFELEELLDA 812 (1075)
Q Consensus 784 ~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~ 812 (1075)
+.+......+.+...+...+.++.+..++
T Consensus 292 ~~l~~l~~~~~~~~~~~~s~~Ri~elLd~ 320 (323)
T d2hyda2 292 GPLRRLVASFTTLTQSFASMDRVFQLIDE 320 (323)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999999999779
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.92 E-value=0.00083 Score=41.87 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99987799999999999987214544898999986329
Q 001446 777 SQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQ 814 (1075)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~~~~ 814 (1075)
.........+......+.....+.....++.+..++++
T Consensus 280 ~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~ 317 (319)
T d3b60a2 280 SSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999999999999999999966998
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.57 E-value=0.00053 Score=43.41 Aligned_cols=72 Identities=29% Similarity=0.402 Sum_probs=60.7
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHCCEEEEEC
Q ss_conf 98793499999999987----179979998579979999999999999981--3975999916921686179499991
Q 001446 314 DELSLGEQQRLGMARLF----YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLD 385 (1075)
Q Consensus 314 ~~LSgGqkqRi~lARal----~~~p~illlDEpts~LD~~~~~~i~~~l~~--~~~t~i~vtH~~~~~~~~d~i~~l~ 385 (1075)
..+|+|||+.+.++..+ ...+.++++|||-++|++...+.+...+++ .+.-+|++||++.++..+|+++.+.
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~ 295 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVT 295 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEE
T ss_conf 102577766777776655654226744554320335797899999999998554887999989889997324289999
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.07 E-value=0.0087 Score=33.96 Aligned_cols=59 Identities=12% Similarity=0.079 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH----HHHHHHCCCEEEEEECCHHHHHH
Q ss_conf 499999999987179979998579979999999999----99998139759999169216861
Q 001446 319 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF----CAKVRAMGTSCITISHRPALVAF 377 (1075)
Q Consensus 319 GqkqRi~lARal~~~p~illlDEpts~LD~~~~~~i----~~~l~~~~~t~i~vtH~~~~~~~ 377 (1075)
.|-+|+.-.---..+..++++||...+-++.....+ .+.+.+.+..++++||..++...
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~l 162 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL 162 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHHH
T ss_conf 867889877502897727855454568623320025888888886237613786520233322
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.99 E-value=0.01 Score=33.45 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=31.1
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHH----HHHH-CCCEEEEEECCHHHH
Q ss_conf 17997999857997999999999999----9981-397599991692168
Q 001446 331 YHKPKFAILDECTSAVTTDMEERFCA----KVRA-MGTSCITISHRPALV 375 (1075)
Q Consensus 331 ~~~p~illlDEpts~LD~~~~~~i~~----~l~~-~~~t~i~vtH~~~~~ 375 (1075)
..+..++++||+..+=++.....+.. .+.. .+..++++||...+.
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 54660885322235877456667898764543204544289852468776
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.62 E-value=0.011 Score=33.14 Aligned_cols=116 Identities=16% Similarity=0.221 Sum_probs=66.3
Q ss_pred ECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCH
Q ss_conf 18998999959860699999999579999942799699683334648999078999857788985179977765676899
Q 001446 206 EPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTH 285 (1075)
Q Consensus 206 ~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~p~l~~~ti~~ni~~~~~~~~~~~~~~~ 285 (1075)
.++-.+.++||+||||||.+..++...+....+ |.-+- +|. .+..+...
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~-------------i~tiE-dPi----------E~~~~~~~------- 204 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN-------------ILTVE-DPI----------EFDIDGIG------- 204 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC-------------EEEEE-SSC----------CSCCSSSE-------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE-------------EEEEC-CCC----------CCCCCCCC-------
T ss_conf 410548987678777447799986662578746-------------99962-674----------34567887-------
Q ss_pred HHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 99999999769905772199985667899879349999999998717997999857997999999999999998139759
Q 001446 286 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSC 365 (1075)
Q Consensus 286 ~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRi~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~t~ 365 (1075)
...... ..|+.---++..++-.+|++++..|.. |.++.....+.- ..|..+
T Consensus 205 --------q~~v~~-----------------~~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa-~tGhlV 255 (401)
T d1p9ra_ 205 --------QTQVNP-----------------RVDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQAS-LTGHLV 255 (401)
T ss_dssp --------EEECBG-----------------GGTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHH-HTTCEE
T ss_pred --------EEEECC-----------------CCCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHHH-HCCCEE
T ss_conf --------026558-----------------767799999999984138889845768---759999999997-249858
Q ss_pred EEEECCHHHHHHCCEE
Q ss_conf 9991692168617949
Q 001446 366 ITISHRPALVAFHDVV 381 (1075)
Q Consensus 366 i~vtH~~~~~~~~d~i 381 (1075)
+..-|-.+.....++.
T Consensus 256 ~tTlHa~~a~~~~~Rl 271 (401)
T d1p9ra_ 256 MSTLHTNTAVGAVTRL 271 (401)
T ss_dssp EEEECCSSSHHHHHHH
T ss_pred EEEECCCCHHHHHHHH
T ss_conf 9983367667665432
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.44 E-value=0.0069 Score=34.71 Aligned_cols=29 Identities=41% Similarity=0.595 Sum_probs=23.4
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 89999598606999999995799999427
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLWPLVSGH 238 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~~~~~G~ 238 (1075)
.++|+|++|+|||||+++|.|.-.-..|.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~ 86 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEGA 86 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 79998999997899999995888677756
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.14 E-value=0.0017 Score=39.38 Aligned_cols=38 Identities=26% Similarity=0.421 Sum_probs=24.0
Q ss_pred CEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 23650898699984999958899999928999998827
Q 001446 857 TFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL 894 (1075)
Q Consensus 857 Sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I 894 (1075)
..-++.|..+.|+|+|||||||++++|.++.++..--|
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~riv 197 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERII 197 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEE
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEE
T ss_conf 99998378889994035662578999865301456233
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.06 E-value=0.0027 Score=37.93 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=27.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8986999849999588999999289999988276
Q 001446 862 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 895 (1075)
Q Consensus 862 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~ 895 (1075)
+|++.+++|+||.|||||++.|.+-.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.97 E-value=0.00065 Score=42.74 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEC
Q ss_conf 69998499995889999992899999882764
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 896 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~i 896 (1075)
.|.|+||.|+||||++..+.+.+...++.+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~ 34 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 99998899971999999999999977997999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.86 E-value=0.0046 Score=36.10 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=31.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 89989999598606999999995799999427996
Q 001446 207 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241 (1075)
Q Consensus 207 ~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~ 241 (1075)
+|+.++++|+||+|||||++.|.+......|.|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCC
T ss_conf 69808997889877888877305355501068420
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.049 Score=28.12 Aligned_cols=152 Identities=14% Similarity=0.141 Sum_probs=66.9
Q ss_pred CEEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHCCCC
Q ss_conf 70145101889189989999598606999999995799999427996996833346489990789998577889851799
Q 001446 195 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPL 274 (1075)
Q Consensus 195 ~~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~p~l~~~ti~~ni~~~~ 274 (1075)
..++.+ +.+|+.+.|.|++|+|||||+..++--+. .|.-.+... ..-...+.|+.-+.. ...+.+.+.--.
T Consensus 20 d~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia--~g~~~~~~~-~~~~~~vl~~~~E~~--~~~~~~Rl~~~~ 90 (274)
T d1nlfa_ 20 DYVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVG-ELPTGPVIYLPAEDP--PTAIHHRLHALG 90 (274)
T ss_dssp CEEETT----EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCC-CCCCCCEEEEESSSC--HHHHHHHHHHHH
T ss_pred HHHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHH--CCCCCCCCC-CCCCCCEEEEECCCH--HHHHHHHHHHHH
T ss_conf 898689----55895899992899989999999999997--699721112-357873689851234--999999999986
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----CHH
Q ss_conf 777656768999999999976990577219998566789987934999999999871799799985799799-----999
Q 001446 275 TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV-----TTD 349 (1075)
Q Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRi~lARal~~~p~illlDEpts~L-----D~~ 349 (1075)
................+. +.. +.....-....+.-......+++++++|--.... |..
T Consensus 91 ------~~~~~~~~~~~~~~~~~~------~~~-----~~~~~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~ 153 (274)
T d1nlfa_ 91 ------AHLSAEERQAVADGLLIQ------PLI-----GSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASG 153 (274)
T ss_dssp ------TTSCHHHHHHHHHHEEEC------CCT-----TSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHH
T ss_pred ------HCCCHHHHHCCCCCCEEC------CCC-----CCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHCCCCCCCHH
T ss_conf ------236866653123332321------456-----742035789999998875267658962813542266523225
Q ss_pred HHHHHHHHHH----HCCCEEEEEECCH
Q ss_conf 9999999998----1397599991692
Q 001446 350 MEERFCAKVR----AMGTSCITISHRP 372 (1075)
Q Consensus 350 ~~~~i~~~l~----~~~~t~i~vtH~~ 372 (1075)
....++..++ ..+.++|++.|--
T Consensus 154 ~~~~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 154 PMAQVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 689999887777644797540131005
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.64 E-value=0.0024 Score=38.29 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=25.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8986999849999588999999289999988276
Q 001446 862 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 895 (1075)
Q Consensus 862 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~ 895 (1075)
+|.+..++|+||.|||||++.|.+=.....|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.44 E-value=0.006 Score=35.19 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=29.8
Q ss_pred CCCCEEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHC
Q ss_conf 999701451018891899899995986069999999957
Q 001446 192 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 192 ~~~~~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g 230 (1075)
|++-+-|+.+.--+.+|+++.|.|++|+||||++.-++-
T Consensus 19 ~TG~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 19 FSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp CCSCTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 788366888746978980899994799979999999997
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.41 E-value=0.0038 Score=36.79 Aligned_cols=26 Identities=35% Similarity=0.675 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 99899995986069999999957999
Q 001446 208 GSNLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 208 G~~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
|.++.|+||||||||||.+.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.39 E-value=0.035 Score=29.21 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.++++|+.|+|||||++.|.|.-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.36 E-value=0.0038 Score=36.72 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=29.7
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCC
Q ss_conf 899995986069999999957999994279969968333464899907899985
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAV 263 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~p~l~~ 263 (1075)
+++|.|++||||||+.+.|..+.....+ ..++..++++.+...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------HRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------CCCEEEEEGGGGBCC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----------CCCEEEEEEEEEECC
T ss_conf 9999689999876899999999730468-----------996599952156898
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.15 E-value=0.007 Score=34.70 Aligned_cols=26 Identities=42% Similarity=0.606 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89989999598606999999995799
Q 001446 207 PGSNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 207 ~G~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.|++++|+||+||||||+.+.|+...
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.13 E-value=0.0047 Score=36.06 Aligned_cols=27 Identities=41% Similarity=0.751 Sum_probs=23.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 986999849999588999999289999
Q 001446 863 GKSLLVTGPNGSGKSSVFRVLRGLWPV 889 (1075)
Q Consensus 863 Ge~vaIVG~SGsGKSTL~~lL~rl~~~ 889 (1075)
|..+.|+||||||||||++.|..-++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.11 E-value=0.006 Score=35.22 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=17.1
Q ss_pred ECCCEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 18998999959860699999999579
Q 001446 206 EPGSNLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 206 ~~G~~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
.+|-++.|+|++||||||+.+.|+..
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99769998899999999999999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.09 E-value=0.075 Score=26.67 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=29.4
Q ss_pred CCCEEEEECEE-EEECCCEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 99701451018-8918998999959860699999999579
Q 001446 193 TGNVLVENLTL-KVEPGSNLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 193 ~~~~~l~~~~l-~i~~G~~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
++-+-|+.+=- -+++|+.+.|.|++|||||+|+.-++-.
T Consensus 10 TG~~~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 10 SGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp CSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 8967798845689869849999918999999999999999
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.92 E-value=0.083 Score=26.34 Aligned_cols=19 Identities=47% Similarity=0.733 Sum_probs=10.2
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 6999849999588999999
Q 001446 865 SLLVTGPNGSGKSSVFRVL 883 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL 883 (1075)
.+-|.||+.|||||+++.+
T Consensus 43 ~~iiTGpN~~GKSt~lk~i 61 (234)
T d1wb9a2 43 MLIITGPNMGGKSTYMRQT 61 (234)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHH
T ss_conf 9999546731368999987
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.86 E-value=0.011 Score=33.15 Aligned_cols=27 Identities=37% Similarity=0.630 Sum_probs=23.4
Q ss_pred ECCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 189989999598606999999995799
Q 001446 206 EPGSNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 206 ~~G~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
|+|-.++|+||+||||||+.+.|+..+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.85 E-value=0.009 Score=33.84 Aligned_cols=38 Identities=34% Similarity=0.440 Sum_probs=28.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCC
Q ss_conf 8986999849999588999999289999988276489877
Q 001446 862 PGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHI 901 (1075)
Q Consensus 862 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di 901 (1075)
.|+-|.|+|++||||||+.+.|.+-... --+.+|+.++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~d~~ 40 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHSDDL 40 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECTTHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECHHHH
T ss_conf 9859999889999889999999999599--9799068999
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.81 E-value=0.0085 Score=34.01 Aligned_cols=23 Identities=35% Similarity=0.328 Sum_probs=19.5
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
+++|.|++|||||||.+.|....
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978988789999999999983
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.79 E-value=0.0073 Score=34.54 Aligned_cols=112 Identities=17% Similarity=0.221 Sum_probs=62.4
Q ss_pred EEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 89189989999598606999999995799999427996996833346489990789998577889851799777656768
Q 001446 204 KVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 283 (1075)
Q Consensus 204 ~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~p~l~~~ti~~ni~~~~~~~~~~~~~ 283 (1075)
-++.+..+.|+|+.||||||++++|+++.++..=-+++.. .+-+. ++... ..
T Consensus 162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd--------------~~El~---------l~~~~--~~--- 213 (323)
T d1g6oa_ 162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED--------------TEEIV---------FKHHK--NY--- 213 (323)
T ss_dssp HHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES--------------SCCCC---------CSSCS--SE---
T ss_pred HHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEECCC--------------HHHHH---------CCCCC--CC---
T ss_conf 9983788899940356625789998653014562331132--------------26551---------11124--54---
Q ss_pred CHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999999997699057721999856678998793499999999987179979998579979999999999999981397
Q 001446 284 THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 363 (1075)
Q Consensus 284 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRi~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~ 363 (1075)
..+ . . +...+.. =.+-.++-.+|+.+++.|.-.. +... +++.+..-+.
T Consensus 214 -----------~~~----~--~-------~~~~~~~----~ll~~~lR~~pd~iivgEiR~~---ea~~-~l~a~~tGh~ 261 (323)
T d1g6oa_ 214 -----------TQL----F--F-------GGNITSA----DCLKSCLRMRPDRIILGELRSS---EAYD-FYNVLCSGHK 261 (323)
T ss_dssp -----------EEE----E--C-------BTTBCHH----HHHHHHTTSCCSEEEESCCCST---HHHH-HHHHHHTTCS
T ss_pred -----------CEE----C--C-------CCCHHHH----HHHHHHHCCCCCCCCCCCCCCH---HHHH-HHHHHHHCCC
T ss_conf -----------100----1--4-------6542499----9999974349985457866746---5999-9999981698
Q ss_pred EEEEEECCHHHH
Q ss_conf 599991692168
Q 001446 364 SCITISHRPALV 375 (1075)
Q Consensus 364 t~i~vtH~~~~~ 375 (1075)
.++...|-.+..
T Consensus 262 g~~tT~Ha~s~~ 273 (323)
T d1g6oa_ 262 GTLTTLHAGSSE 273 (323)
T ss_dssp CEEEEECCSSHH
T ss_pred CEEEEECCCCHH
T ss_conf 579987879999
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.73 E-value=0.0095 Score=33.66 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=17.7
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.++|+|++|+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.67 E-value=0.0088 Score=33.90 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=24.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0898699984999958899999928999
Q 001446 861 VPGKSLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 861 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
+.|..|.|+|.+||||||+.+.|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.67 E-value=0.0088 Score=33.91 Aligned_cols=28 Identities=39% Similarity=0.666 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 8998999959860699999999579999
Q 001446 207 PGSNLLITGPNGSGKSSLFRVLGGLWPL 234 (1075)
Q Consensus 207 ~G~~~~i~G~~GsGKSTLl~~l~g~~~~ 234 (1075)
+|.++.|+||||+||+||.+.|+-..|.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~ 28 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPL 28 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9809999999999999999999863986
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.66 E-value=0.011 Score=33.12 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.9
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.++++|.+|+|||||++.|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.62 E-value=0.012 Score=32.79 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=24.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0898699984999958899999928999
Q 001446 861 VPGKSLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 861 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
++|-++.|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.56 E-value=0.1 Score=25.70 Aligned_cols=41 Identities=12% Similarity=-0.006 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCCCCHHHHHH----HHHHHHHCCCEEEEECCCCC
Q ss_conf 797867615688999889999----99998734966999437989
Q 001446 1010 KPKFGILDECTNATSVDVEEQ----LYRLAKDMGITFVTSSQRPA 1050 (1075)
Q Consensus 1010 ~p~ILiLDEATSaLD~~~e~~----i~~~~~~~~~TvI~IaHRl~ 1050 (1075)
+..++++||--++-+++--.. +.+.+.+.+++++..+|-..
T Consensus 114 ~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~e 158 (224)
T d1ewqa2 114 ENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFE 158 (224)
T ss_dssp TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHH
T ss_pred CCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHH
T ss_conf 772785545456862332002588888888623761378652023
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.50 E-value=0.012 Score=32.94 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=29.3
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEECCCCCC
Q ss_conf 8999959860699999999579999942799699683334648999078999
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 261 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~p~l 261 (1075)
+++|.|++||||||+.+.|........ +..+ ...+..++++.|.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~--~~~~------~~~~~vi~~D~yy 47 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE--VDYR------QKQVVILSQDSFY 47 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG--SCGG------GCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHC--CCCC------CCCEEEEECCCCC
T ss_conf 999989997879999999999964101--3457------8843999346532
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.45 E-value=0.012 Score=32.91 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=19.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 989999598606999999995799
Q 001446 209 SNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 209 ~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
..++|+||+|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.40 E-value=0.0053 Score=35.65 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=31.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 89989999598606999999995799999427996
Q 001446 207 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 241 (1075)
Q Consensus 207 ~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~ 241 (1075)
+|+.++++|+||.|||||++.|.|......|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC
T ss_conf 35649998778734878987515176764035553
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.35 E-value=0.013 Score=32.60 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=18.6
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 899995986069999999957999
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
.++|+|++|||||||++.|+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899989999999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.25 E-value=0.012 Score=32.74 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=19.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89989999598606999999995799
Q 001446 207 PGSNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 207 ~G~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
+|..+.++|++||||||+.+.|+..+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.21 E-value=0.014 Score=32.27 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=22.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8699984999958899999928999
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
.+|+|+|++|||||||++.|..-+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.18 E-value=0.013 Score=32.66 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=21.2
Q ss_pred ECCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 189989999598606999999995799
Q 001446 206 EPGSNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 206 ~~G~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
+.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.15 E-value=0.064 Score=27.18 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=28.9
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHC--CCEEEEEECCHHH
Q ss_conf 799799985799799999999999999813--9759999169216
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPAL 374 (1075)
Q Consensus 332 ~~p~illlDEpts~LD~~~~~~i~~~l~~~--~~t~i~vtH~~~~ 374 (1075)
.+.+++++||+-. +.......+...+.+. +..+|+++++.+.
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~ 173 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 173 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCC
T ss_conf 8724999424333-4543111221002213566430001021110
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.10 E-value=0.029 Score=29.84 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=33.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCHH
Q ss_conf 9998499995889999992899999882764898775345886727997089988975365
Q 001446 866 LLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLR 926 (1075)
Q Consensus 866 vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~~~r~~i~~VpQdp~LF~GTIr 926 (1075)
|||.|++||||||+.+.|..+.....+. .++.+|++|-|+.+...+
T Consensus 83 IGIaG~sgSGKSTla~~L~~lL~~~~~~---------------~~v~~Is~D~F~~~~~~l 128 (308)
T d1sq5a_ 83 ISIAGSVAVGKSTTARVLQALLSRWPEH---------------RRVELITTDGFLHPNQVL 128 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHTTSTTC---------------CCEEEEEGGGGBCCHHHH
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCC---------------CCEEEEEEEEEECCCHHH
T ss_conf 9996899998768999999997304689---------------965999521568984588
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.08 E-value=0.014 Score=32.26 Aligned_cols=27 Identities=37% Similarity=0.639 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898699984999958899999928999
Q 001446 862 PGKSLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 862 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
.|.-+.|+||||+||+||.+.|..-++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.04 E-value=0.017 Score=31.72 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=19.1
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.++|+|++|+|||||++.|.|.-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.00 E-value=0.019 Score=31.27 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.0
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.++|+|++|+|||||++.|.|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=93.95 E-value=0.024 Score=30.51 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=22.2
Q ss_pred ECCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 189989999598606999999995799
Q 001446 206 EPGSNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 206 ~~G~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
|+|-.+.|+||.||||||+.+.|+..+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.93 E-value=0.017 Score=31.78 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 699984999958899999928999
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
.|||.|++||||||+.+.|...+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.86 E-value=0.016 Score=31.81 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 99899995986069999999957999
Q 001446 208 GSNLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 208 G~~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
..++.|+|++||||||+.+.|+....
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.84 E-value=0.019 Score=31.38 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=18.8
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.++|+||+||||||+.+.|+-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.80 E-value=0.021 Score=31.04 Aligned_cols=24 Identities=42% Similarity=0.695 Sum_probs=19.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 998999959860699999999579
Q 001446 208 GSNLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 208 G~~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
|=.++++|++++|||||++.|.|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.79 E-value=0.022 Score=30.89 Aligned_cols=26 Identities=27% Similarity=0.647 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 98699984999958899999928999
Q 001446 863 GKSLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 863 Ge~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
..-|.|.|++||||||+.+.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.79 E-value=0.0057 Score=35.35 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 699984999958899999928999998
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLWPVVS 891 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~~~~~ 891 (1075)
.++|+|++|||||||++.|.+-+....
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g 30 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARG 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 899991899989999999999999779
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.79 E-value=0.0058 Score=35.31 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=26.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 98999959860699999999579999942799
Q 001446 209 SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 240 (1075)
Q Consensus 209 ~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~ 240 (1075)
..+.|+||+|+|||||++.++..+....+.+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~ 33 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 69999889997199999999999997799799
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=93.75 E-value=0.022 Score=30.76 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=23.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089869998499995889999992899
Q 001446 861 VPGKSLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 861 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
+.+.-+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=93.73 E-value=0.0016 Score=39.76 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=28.1
Q ss_pred EEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 14510188918998999959860699999999579
Q 001446 197 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 197 ~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
.+++.++.+.+| +++|+|||||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 870279974998-0899889999879999999999
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=93.55 E-value=0.15 Score=24.30 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=25.9
Q ss_pred CCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 98533232342365089869998499995889999992
Q 001446 847 PSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 847 p~~~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 884 (1075)
|....++.++ .||+.+.|+|++|+||||++.-|.
T Consensus 17 p~~d~li~G~----~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 17 PPLDYVLPNM----VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp CCCCEEETTE----ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCHHHHHCCC----CCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 9878986895----589589999289998999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.48 E-value=0.01 Score=33.45 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898699984999958899999928999
Q 001446 862 PGKSLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 862 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
.|..|.++|++||||||+.+.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.40 E-value=0.029 Score=29.83 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.4
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
+++++|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.36 E-value=0.011 Score=33.29 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=13.0
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 899995986069999999957999
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
.++|+|++|||||||+..|+..+.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999980999989999999999998
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.32 E-value=0.027 Score=30.10 Aligned_cols=24 Identities=42% Similarity=0.848 Sum_probs=18.8
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 899995986069999999957999
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
-+.|+|||||||+||.+.|+...+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.29 E-value=0.026 Score=30.20 Aligned_cols=24 Identities=38% Similarity=0.645 Sum_probs=19.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 989999598606999999995799
Q 001446 209 SNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 209 ~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
..+.++||+||||||+.+.|+..+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 749998999999999999999996
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.25 E-value=0.016 Score=31.78 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=11.9
Q ss_pred EEEECCCCCHHHHHHHHHHC
Q ss_conf 99995986069999999957
Q 001446 211 LLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 211 ~~i~G~~GsGKSTLl~~l~g 230 (1075)
++|+|++++|||||++.|.|
T Consensus 4 VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEE
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999879999999968
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.25 E-value=0.027 Score=30.14 Aligned_cols=45 Identities=22% Similarity=0.188 Sum_probs=29.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 699984999958899999928999998827648987753458867279970899889
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTC 921 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~~~r~~i~~VpQdp~LF 921 (1075)
.|||.|++||||||+.+.|........ +.. ....+.+++||-|..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~--~~~----------~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE--VDY----------RQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG--SCG----------GGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHC--CCC----------CCCCEEEEECCCCCC
T ss_conf 999989997879999999999964101--345----------788439993465322
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=93.23 E-value=0.034 Score=29.36 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=24.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089869998499995889999992899
Q 001446 861 VPGKSLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 861 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
|+|-++.|+||.||||||+...|..-|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=93.21 E-value=0.024 Score=30.54 Aligned_cols=20 Identities=40% Similarity=0.418 Sum_probs=10.4
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 89999598606999999995
Q 001446 210 NLLITGPNGSGKSSLFRVLG 229 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~ 229 (1075)
++.|+|++||||||+.+.|.
T Consensus 4 lIii~G~pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFI 23 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998999999999999999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.15 E-value=0.02 Score=31.14 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=21.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 9899995986069999999957999
Q 001446 209 SNLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 209 ~~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
..+.|+||+||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.13 E-value=0.024 Score=30.56 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 869998499995889999992899
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
-++.|+|++||||||+.+.|..-+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 979898999999899999999997
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.11 E-value=0.025 Score=30.34 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=19.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 99899995986069999999957999
Q 001446 208 GSNLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 208 G~~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
...+.|+||||+||+||++.|+...+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.11 E-value=0.031 Score=29.64 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 869998499995889999992899
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
..+.|+|++||||||+.++|..-+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 749998999999999999999996
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=93.10 E-value=0.025 Score=30.38 Aligned_cols=33 Identities=30% Similarity=0.276 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCC
Q ss_conf 869998499995889999992899999882764898
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQ 899 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~ 899 (1075)
+-|.|+|++||||||+++.|.+-. .|...++..
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~d 35 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINRD 35 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEECHH
T ss_conf 799998999999999999999957---997996039
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.09 E-value=0.026 Score=30.28 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 99899995986069999999957999
Q 001446 208 GSNLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 208 G~~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
.-+++++|++|+|||||++.+.+-..
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 77899999999898999999967887
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.05 E-value=0.021 Score=30.95 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=15.8
Q ss_pred EEEECCCCCHHHHHHHHHHCC
Q ss_conf 999959860699999999579
Q 001446 211 LLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 211 ~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
++|+|++++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.02 E-value=0.023 Score=30.70 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 869998499995889999992899
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
.-+.|+||||+||+||++.|.+-.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.94 E-value=0.037 Score=29.05 Aligned_cols=22 Identities=36% Similarity=0.447 Sum_probs=18.4
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
.++|+|.+|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.90 E-value=0.015 Score=32.01 Aligned_cols=27 Identities=19% Similarity=0.099 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 699984999958899999928999998
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLWPVVS 891 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~~~~~ 891 (1075)
-++|+|++|||||||+..|.+.+...+
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g 29 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREG 29 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 999980999989999999999998679
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.87 E-value=0.035 Score=29.26 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=19.3
Q ss_pred EEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 99995986069999999957999
Q 001446 211 LLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 211 ~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
+.|+|||||||+||.+.|+...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=92.85 E-value=0.024 Score=30.53 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 699984999958899999928999
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
-+.|+|++||||||+++.|.+-+.
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899989999998999999999809
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=92.80 E-value=0.018 Score=31.41 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=15.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 869998499995889999992899
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
=+|+|+|++++|||||++.|.+-.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789998899998999999985898
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.77 E-value=0.049 Score=28.08 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=23.7
Q ss_pred EEECCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89189989999598606999999995799
Q 001446 204 KVEPGSNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 204 ~i~~G~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
-+++|+.+.|.||+|||||+|..-++...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.70 E-value=0.041 Score=28.67 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 9989999598606999999995799
Q 001446 208 GSNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 208 G~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
..+++|.|++||||||+.+.|+..+
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9889998999989899999999999
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.63 E-value=0.037 Score=29.07 Aligned_cols=25 Identities=40% Similarity=0.664 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 9989999598606999999995799
Q 001446 208 GSNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 208 G~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
+.-+.++||+|||||.|.++|+...
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 8669998999988889999986213
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=92.62 E-value=0.033 Score=29.46 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 69998499995889999992899
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
+|+|||++|+|||||++.|.+.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.60 E-value=0.035 Score=29.28 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=20.3
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
.++|+|++|+|||||++.|.+.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.51 E-value=0.044 Score=28.43 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=13.3
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
+++|+|++|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.51 E-value=0.06 Score=27.44 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.7
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 650898699984999958899999928
Q 001446 859 EIVPGKSLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 859 ~I~~Ge~vaIVG~SGsGKSTL~~lL~r 885 (1075)
-+++|+.+.|.|++|||||++..-+..
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 985997999995899999999999999
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.46 E-value=0.028 Score=30.04 Aligned_cols=22 Identities=32% Similarity=0.807 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998499995889999992899
Q 001446 866 LLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 866 vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
|.|+|||||||+||.+.|..-.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999999899999999748
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.34 E-value=0.026 Score=30.25 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=23.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 869998499995889999992899999882
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRGLWPVVSGS 893 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~rl~~~~~G~ 893 (1075)
..|+|.|+.||||||+++.|...+.....+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 889998999989899999999999876998
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.29 E-value=0.061 Score=27.37 Aligned_cols=41 Identities=10% Similarity=0.073 Sum_probs=25.1
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHH
Q ss_conf 7997999857997999999999999998139759999169216
Q 001446 332 HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPAL 374 (1075)
Q Consensus 332 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~t~i~vtH~~~~ 374 (1075)
.+.+++++|-.. ... +....+...+++.++.+++|-.....
T Consensus 134 ~~~d~~l~~~~~-~~~-~~d~~l~~~l~~~~k~~~~V~nK~D~ 174 (400)
T d1tq4a_ 134 YEYDFFIIISAT-RFK-KNDIDIAKAISMMKKEFYFVRTKVDS 174 (400)
T ss_dssp GGCSEEEEEESS-CCC-HHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred HCCEEEEEECCC-CCC-HHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 226599996588-887-88999999999769987999708632
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.27 E-value=0.038 Score=29.00 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.5
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
+++++|.+||||||+.+.|+...
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999999999999999
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.14 E-value=0.043 Score=28.54 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998499995889999992899
Q 001446 866 LLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 866 vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
|.|+|||||||+||++.|..-+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.13 E-value=0.051 Score=28.00 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89989999598606999999995799
Q 001446 207 PGSNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 207 ~G~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
+..+++|+||.||||||+.+.|+..+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.12 E-value=0.054 Score=27.79 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.8
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++|+|+.||||||+.+.+..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.12 E-value=0.055 Score=27.71 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=20.9
Q ss_pred ECCCEEEEECCCCCHHHHHHHHHHC
Q ss_conf 1899899995986069999999957
Q 001446 206 EPGSNLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 206 ~~G~~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+.-+.+.++|++||||||+.+.++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=92.10 E-value=0.043 Score=28.51 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=15.8
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
++.++|++|+|||||++.+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.07 E-value=0.044 Score=28.50 Aligned_cols=46 Identities=30% Similarity=0.460 Sum_probs=33.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEECCCC
Q ss_conf 989999598606999999995799999427996996833346489990789
Q 001446 209 SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 259 (1075)
Q Consensus 209 ~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~p 259 (1075)
+-+.++||+|||||-|.+.|+++... -.+..+.. .+ ...||+..+.
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~V--PFv~~daT--~f-TeaGYvG~DV 95 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLANA--PFIKVEAT--KF-TEVGYVGKEV 95 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGG--GG-C----CCCCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCC--CEEEEECC--EE-EECCEEECCH
T ss_conf 64799899998899999999987389--88986255--11-4111110444
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.06 E-value=0.016 Score=31.84 Aligned_cols=26 Identities=35% Similarity=0.508 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 99899995986069999999957999
Q 001446 208 GSNLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 208 G~~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
.-.++|+||.|+|||||+..|...+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 32897438999989999999999997
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.04 E-value=0.043 Score=28.53 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9869998499995889999992899
Q 001446 863 GKSLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 863 Ge~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
...|.|+||.||||||+...|..-|
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9489998999998899999999997
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=91.96 E-value=0.05 Score=28.01 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.7
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
.++|+|+.|||||||++.|+..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918998399999999998
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.92 E-value=0.049 Score=28.12 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=11.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 089869998499995889999992
Q 001446 861 VPGKSLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 861 ~~Ge~vaIVG~SGsGKSTL~~lL~ 884 (1075)
+.|..+-+.|.||||||||.+.|.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~ 45 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELE 45 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 998699998999999899999999
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=91.87 E-value=0.06 Score=27.41 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=18.5
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
.++|+|+..+|||||++.|.+.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999907787099999999974
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.87 E-value=0.051 Score=28.00 Aligned_cols=21 Identities=43% Similarity=0.499 Sum_probs=18.5
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++|+|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.73 E-value=0.039 Score=28.89 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=28.1
Q ss_pred ECEEEEECCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 101889189989999598606999999995799
Q 001446 200 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 200 ~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
|.=+.+-+|++.+|.|++|+|||+|+..+..-.
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 412564578755686799988789999999977
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.71 E-value=0.054 Score=27.79 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 69998499995889999992899
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
+|+++|+||+||||+++.|++--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.66 E-value=0.061 Score=27.35 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6999849999588999999289
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGL 886 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl 886 (1075)
+|+|+|++|+|||||++.|.+-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=91.64 E-value=0.048 Score=28.19 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 69998499995889999992899
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
.|+|+|+.|||||||++.|.+..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.57 E-value=0.068 Score=26.99 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=23.5
Q ss_pred ECCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 189989999598606999999995799
Q 001446 206 EPGSNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 206 ~~G~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
++|.++.++|.+|||||||.+.|...+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 998699998999999899999999887
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.55 E-value=0.064 Score=27.22 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=19.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 989999598606999999995799
Q 001446 209 SNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 209 ~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
+.+.++|++||||||+.+.|+..+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.51 E-value=0.057 Score=27.59 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89989999598606999999995799
Q 001446 207 PGSNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 207 ~G~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
+-..++|+||.||||||+.+.|+..+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97289998999999899999999985
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.48 E-value=0.064 Score=27.21 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 986999849999588999999289
Q 001446 863 GKSLLVTGPNGSGKSSVFRVLRGL 886 (1075)
Q Consensus 863 Ge~vaIVG~SGsGKSTL~~lL~rl 886 (1075)
+=+|+|+|++|+|||||++.|.+-
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 888999999999999999999778
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.45 E-value=0.028 Score=29.98 Aligned_cols=40 Identities=15% Similarity=0.364 Sum_probs=29.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEECCCCCC
Q ss_conf 98999959860699999999579999942799699683334648999078999
Q 001446 209 SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 261 (1075)
Q Consensus 209 ~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~p~l 261 (1075)
-+++|+|+|||||||+.+.|...... .| -+...+.++.|-
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~-~~------------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRR-EG------------VKAVSIEGDAFH 44 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHH-HT------------CCEEEEEGGGGB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-CC------------CCEEEEECCCCC
T ss_conf 89999899978099999999999715-69------------976999477787
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=91.40 E-value=0.067 Score=27.04 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=19.3
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.+.|+|++||||||+.+.|+..+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39998999998899999999983
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.40 E-value=0.071 Score=26.85 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=20.0
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.++|-||+||||||+.+.|+..+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.29 E-value=0.085 Score=26.24 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0898699984999958899999928
Q 001446 861 VPGKSLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 861 ~~Ge~vaIVG~SGsGKSTL~~lL~r 885 (1075)
+.-+-|.++|+.||||||+++-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.25 E-value=0.06 Score=27.42 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 86999849999588999999289
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRGL 886 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~rl 886 (1075)
+.+-++|++||||||+.+.|..-
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
T ss_conf 98899889999889999999999
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=91.21 E-value=0.08 Score=26.44 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=18.6
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
+++++|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.21 E-value=0.061 Score=27.38 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89869998499995889999992899
Q 001446 862 PGKSLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 862 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
+-..+.|+||.||||||+...|..-|
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97289998999999899999999985
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.17 E-value=0.056 Score=27.68 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=22.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 9899995986069999999957999
Q 001446 209 SNLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 209 ~~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
..+.+.||+|||||||.+.|++...
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999889799889999999999865
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.16 E-value=0.084 Score=26.30 Aligned_cols=27 Identities=37% Similarity=0.362 Sum_probs=21.7
Q ss_pred EEECCCEEEEECCCCCHHHHHHHHHHC
Q ss_conf 891899899995986069999999957
Q 001446 204 KVEPGSNLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 204 ~i~~G~~~~i~G~~GsGKSTLl~~l~g 230 (1075)
-+++|+.+.|.||+|||||||..-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.15 E-value=0.069 Score=26.95 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=23.0
Q ss_pred EECCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 9189989999598606999999995799
Q 001446 205 VEPGSNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 205 i~~G~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
++.+.++.|.||.||||||+.+.|+..+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=91.13 E-value=0.29 Score=22.13 Aligned_cols=41 Identities=27% Similarity=0.579 Sum_probs=26.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEECCCCC
Q ss_conf 899899995986069999999957999994279969968333464899907899
Q 001446 207 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 260 (1075)
Q Consensus 207 ~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~p~ 260 (1075)
++..++++||+|+||||.+--|+..+. ..| ++++++.=+.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g------------~kV~lit~Dt~ 45 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLG------------KKVMFCAGDTF 45 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TTT------------CCEEEECCCCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------------CCEEEEEECCC
T ss_conf 977999989999988999999999999-779------------90799981366
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.12 E-value=0.064 Score=27.20 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=19.2
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
+++++|++|+|||||++.+.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.10 E-value=0.062 Score=27.28 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6999849999588999999289
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGL 886 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl 886 (1075)
+|+|||++|+|||||++.|.+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=91.08 E-value=0.049 Score=28.08 Aligned_cols=28 Identities=39% Similarity=0.469 Sum_probs=17.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0898699984999958899999928999
Q 001446 861 VPGKSLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 861 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
.++--|.++|||||||||.+.++.+..+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHC
T ss_conf 4105489876787774477999866625
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.07 E-value=0.062 Score=27.32 Aligned_cols=23 Identities=43% Similarity=0.775 Sum_probs=11.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 86999849999588999999289
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRGL 886 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~rl 886 (1075)
.-+.++||+|+|||.|+++|.+.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 66999899998888999998621
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.06 E-value=0.067 Score=27.07 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=19.1
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.+.|.||.||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.02 E-value=0.059 Score=27.45 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=22.3
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC
Q ss_conf 89999598606999999995799999
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLWPLV 235 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~~~~ 235 (1075)
.+.+.||+|+||||+.++++..+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 48987999973889999998503888
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.99 E-value=0.1 Score=25.58 Aligned_cols=34 Identities=32% Similarity=0.388 Sum_probs=24.4
Q ss_pred EEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHC
Q ss_conf 01451018891899899995986069999999957
Q 001446 196 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 196 ~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g 230 (1075)
..++...+.+ .|.-+.|+|+||+||||+...+..
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3178999999-999999981899998999999998
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=90.95 E-value=0.077 Score=26.57 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 69998499995889999992899
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
+|+|+|++|+|||||++.|.+--
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.94 E-value=0.044 Score=28.46 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 899899995986069999999957999
Q 001446 207 PGSNLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 207 ~G~~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
++.+++|-|+.||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.91 E-value=0.064 Score=27.20 Aligned_cols=21 Identities=38% Similarity=0.803 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 699984999958899999928
Q 001446 865 SLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~r 885 (1075)
+|+|+|++|+|||||++.|.+
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~ 25 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTT 25 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999889999999967
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.88 E-value=0.071 Score=26.83 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=17.0
Q ss_pred EEEECCCCCHHHHHHHHHHCCC
Q ss_conf 9999598606999999995799
Q 001446 211 LLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 211 ~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
+.++|++||||||+.+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=90.86 E-value=0.067 Score=27.06 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 986999849999588999999289
Q 001446 863 GKSLLVTGPNGSGKSSVFRVLRGL 886 (1075)
Q Consensus 863 Ge~vaIVG~SGsGKSTL~~lL~rl 886 (1075)
|=+|+++|++|+|||||++.|.+-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.82 E-value=0.08 Score=26.46 Aligned_cols=41 Identities=27% Similarity=0.292 Sum_probs=26.4
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEECCCCC
Q ss_conf 899995986069999999957999994279969968333464899907899
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 260 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~p~ 260 (1075)
+++|.|+.|||||||...|.-.+....|. ...+..++.+.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~~----------~~~v~~iS~Ddf 69 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKYGG----------EKSIGYASIDDF 69 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHGG----------GSCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCC----------CCCEEEECCCCC
T ss_conf 99837998788999999999999987277----------860676356777
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.81 E-value=0.11 Score=25.27 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=24.1
Q ss_pred EEEEECEEEEECCCEEEEECCCCCHHHHHHHHHHC
Q ss_conf 01451018891899899995986069999999957
Q 001446 196 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 196 ~~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g 230 (1075)
..++...+.+ .|.-++|+|+||+||||+...+..
T Consensus 3 ~~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 3 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEEEEE-CCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 3289999999-999999980899998999999998
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=90.81 E-value=0.31 Score=21.92 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=48.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 89989999598606999999995799999427996996833346489990789998577889851799777656768999
Q 001446 207 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHG 286 (1075)
Q Consensus 207 ~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~p~l~~~ti~~ni~~~~~~~~~~~~~~~~ 286 (1075)
....++++||+|+||||.+--|+..+. ..| .+++++.=+.+-.. ..+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g------------~kV~lit~Dt~R~g--------------------a~e 57 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK-KKG------------FKVGLVGADVYRPA--------------------ALE 57 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH-HTT------------CCEEEEECCCSSHH--------------------HHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------------CCEEEEEEECCCCC--------------------HHH
T ss_conf 998999989999998999999999999-779------------93699972023551--------------------567
Q ss_pred HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 999999976990577219998566789987934999999999871799799985799799
Q 001446 287 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 346 (1075)
Q Consensus 287 ~~~~~l~~~~l~~~~~~~~~~~~~~~g~~LSgGqkqRi~lARal~~~p~illlDEpts~L 346 (1075)
++....+..++.-.....+ ..+ -.-.+=++..+...+.++++.| |+|.
T Consensus 58 QL~~~a~~l~v~~~~~~~~--------~~~--~~~~~~a~~~~~~~~~d~IlID--TaGr 105 (211)
T d1j8yf2 58 QLQQLGQQIGVPVYGEPGE--------KDV--VGIAKRGVEKFLSEKMEIIIVD--TAGR 105 (211)
T ss_dssp HHHHHHHHHTCCEECCTTC--------CCH--HHHHHHHHHHHHHTTCSEEEEE--CCCS
T ss_pred HHHHHCCCCCCCEEECCCC--------HHH--HHHHHHHHHHHHCCCCCEEEEE--CCCC
T ss_conf 8987401468422302441--------024--4789999987402677369985--3776
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=90.77 E-value=0.0042 Score=36.38 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=25.8
Q ss_pred CCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 3234236508986999849999588999999289
Q 001446 853 ARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGL 886 (1075)
Q Consensus 853 L~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 886 (1075)
+++.+|.+.+| .+.|+|++||||||++.+|.-.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 70279974998-0899889999879999999999
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=90.73 E-value=0.072 Score=26.78 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 69998499995889999992899
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
.+.|+|++||||||+.+.|..-+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39998999998899999999983
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=90.71 E-value=0.061 Score=27.37 Aligned_cols=24 Identities=17% Similarity=0.472 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 869998499995889999992899
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
-++.|.||.||||||+...|..-|
T Consensus 4 m~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 299998899999899999999987
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.70 E-value=0.083 Score=26.34 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 6999849999588999999289999
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLWPV 889 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~~~ 889 (1075)
-|.+||++||||||+++.|.+.+..
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~~ 28 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLNF 28 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999899999999999999999974
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.64 E-value=0.06 Score=27.39 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=15.5
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
+++|-|+.||||||+++.|....
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99988999988899999999870
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.63 E-value=0.084 Score=26.30 Aligned_cols=31 Identities=26% Similarity=0.535 Sum_probs=23.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC---CCCCEE
Q ss_conf 8699984999958899999928999---998827
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRGLWP---VVSGSL 894 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~rl~~---~~~G~I 894 (1075)
-.|+|-||.||||||+.++|..-|. ..+|.+
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl 37 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 37 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHH
T ss_conf 5999789998798999999999969947877999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.56 E-value=0.084 Score=26.27 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=19.2
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.+.|+||.||||||+.+.|+..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.52 E-value=0.096 Score=25.81 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 69998499995889999992899
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
++.|.|+.||||||+...|..-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.52 E-value=0.32 Score=21.73 Aligned_cols=40 Identities=23% Similarity=0.413 Sum_probs=25.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEECCCCC
Q ss_conf 99899995986069999999957999994279969968333464899907899
Q 001446 208 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 260 (1075)
Q Consensus 208 G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~p~ 260 (1075)
-..++++||+|+||||.+--|+..+. ..| .+++.+.=+.+
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~-~~g------------~kV~lit~Dt~ 48 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE-QQG------------KSVMLAAGDTF 48 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH-TTT------------CCEEEECCCTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-HCC------------CCEEEEECCCC
T ss_conf 97999989999998999999999999-779------------94799823213
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.48 E-value=0.16 Score=24.04 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=11.9
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=90.45 E-value=0.099 Score=25.74 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=17.9
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.+.|+||.||||||+.+.|+..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.44 E-value=0.098 Score=25.77 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.6
Q ss_pred ECCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 189989999598606999999995799
Q 001446 206 EPGSNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 206 ~~G~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
++|.+++|.|+-||||||+.+.|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 980599998998889999999999999
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.38 E-value=0.1 Score=25.58 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=19.1
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
+++|.||.||||||..+.|+..+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.35 E-value=0.1 Score=25.65 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=21.1
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 899995986069999999957999
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
.+.+.||+|+||||++++++....
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.33 E-value=0.097 Score=25.81 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6999849999588999999289
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGL 886 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl 886 (1075)
.|+|+|.+|+|||||++.|.+-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=90.33 E-value=0.073 Score=26.75 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6999849999588999999289
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGL 886 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl 886 (1075)
.|||+|++++|||||++.|.+-
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999899999899999999689
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=90.32 E-value=0.1 Score=25.62 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=16.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 98999959860699999999579
Q 001446 209 SNLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 209 ~~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
-+++++|..|||||||++.+.+-
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79999999998989999999668
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=90.30 E-value=0.078 Score=26.52 Aligned_cols=21 Identities=24% Similarity=0.524 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 699984999958899999928
Q 001446 865 SLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~r 885 (1075)
||.|+|++|+|||||++.|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=90.27 E-value=0.11 Score=25.27 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 899899995986069999999957999
Q 001446 207 PGSNLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 207 ~G~~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
...-+.+.||+|||||++.+.|+..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 888678668998882289999999829
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=90.20 E-value=0.081 Score=26.42 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 699984999958899999928
Q 001446 865 SLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~r 885 (1075)
||+|||++|+|||||++.+.+
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999899999999967
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.17 E-value=0.097 Score=25.78 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 69998499995889999992899
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
.|.|.||.||||||+...|..-|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=90.17 E-value=0.05 Score=28.03 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6999849999588999999289
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGL 886 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl 886 (1075)
.|||+|++++|||||++.|.+-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.14 E-value=0.13 Score=24.73 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=25.3
Q ss_pred CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 3232342365089869998499995889999992
Q 001446 851 LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 851 ~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 884 (1075)
.+|.+ =+++|+.+.|.|++||||||+..-+.
T Consensus 25 ~ll~G---Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 25 TLLGG---GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp HHHTS---SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred HHHCC---CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 63179---98699699998389998899999999
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=90.11 E-value=0.14 Score=24.62 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6999849999588999999289
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGL 886 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl 886 (1075)
||+|+|+.|+|||||++.|.+-
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999999998999999998089
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.05 E-value=0.089 Score=26.08 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 69998499995889999992899
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
++.++|+.||||||+.++|..-+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 48998899998899999999984
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=90.04 E-value=0.11 Score=25.35 Aligned_cols=23 Identities=43% Similarity=0.447 Sum_probs=11.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 89989999598606999999995
Q 001446 207 PGSNLLITGPNGSGKSSLFRVLG 229 (1075)
Q Consensus 207 ~G~~~~i~G~~GsGKSTLl~~l~ 229 (1075)
.|.-+.|+|++|+||||+...+.
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHH
T ss_conf 99999998089999999999999
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.02 E-value=0.022 Score=30.88 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=16.7
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
.++++|++++|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.00 E-value=0.071 Score=26.84 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=22.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089869998499995889999992899
Q 001446 861 VPGKSLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 861 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
+..-||++||++|+|||||++.|.+=.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777789999999989899999996788
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=90.00 E-value=0.1 Score=25.68 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 69998499995889999992899
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
++.|+|+.||||||+...|..-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.99 E-value=0.12 Score=24.95 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 899899995986069999999957999
Q 001446 207 PGSNLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 207 ~G~~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
+|.+++|-|+.||||||+.+.|...+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.97 E-value=0.2 Score=23.35 Aligned_cols=33 Identities=30% Similarity=0.367 Sum_probs=25.1
Q ss_pred CCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2323423650898699984999958899999928
Q 001446 852 LARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 852 vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 885 (1075)
.++.--+.+ .|.-|.|+|+||+||||++..|.+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.90 E-value=0.12 Score=25.19 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89989999598606999999995799
Q 001446 207 PGSNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 207 ~G~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
+|.+++|-|+.||||||+.+.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98789998998887999999999999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=89.89 E-value=0.11 Score=25.48 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=19.4
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
+++|+|..||||||..+.+...
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=89.86 E-value=0.12 Score=25.00 Aligned_cols=42 Identities=24% Similarity=0.483 Sum_probs=25.7
Q ss_pred ECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEECCCCC
Q ss_conf 1899899995986069999999957999994279969968333464899907899
Q 001446 206 EPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 260 (1075)
Q Consensus 206 ~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~p~ 260 (1075)
.+...++++||+|+||||.+--|+-.+. ..| ++++++.=+.+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~------------~kV~lit~Dt~ 50 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEG------------KSVVLAAADTF 50 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH-HTT------------CCEEEEEECTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------------CCEEEEEECCC
T ss_conf 9998999989999988999999999999-779------------90699960133
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.83 E-value=0.082 Score=26.35 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=13.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998499995889999992899
Q 001446 866 LLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 866 vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
+.++||.||||||+++.|.+-+
T Consensus 35 ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 35 FLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp EEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988979988999999999986
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.78 E-value=0.1 Score=25.58 Aligned_cols=23 Identities=35% Similarity=0.312 Sum_probs=20.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 98999959860699999999579
Q 001446 209 SNLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 209 ~~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
..++|+|+.|+|||||++.+.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.77 E-value=0.14 Score=24.63 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089869998499995889999992899
Q 001446 861 VPGKSLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 861 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
+.|--++|.|+-||||||++.+|..-+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 980599998998889999999999999
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=89.77 E-value=0.24 Score=22.68 Aligned_cols=29 Identities=31% Similarity=0.367 Sum_probs=22.8
Q ss_pred CEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 23650898699984999958899999928
Q 001446 857 TFEIVPGKSLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 857 Sl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 885 (1075)
|+-.-.|.-|.|+|+||+||||++..|.+
T Consensus 8 ~~v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 8 VLVDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99999999999980899998999999998
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.75 E-value=0.11 Score=25.23 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=17.7
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.+.|+||.||||||..+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.72 E-value=0.1 Score=25.67 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.7
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.+.+.||+|+||||++++++...
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69997899974879999999998
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=89.71 E-value=0.044 Score=28.46 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=12.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 869998499995889999992899
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
-+|||+|+.|+|||||+..|.+.+
T Consensus 55 ~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 55 LRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289743899998999999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=89.70 E-value=0.097 Score=25.80 Aligned_cols=22 Identities=45% Similarity=0.578 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6999849999588999999289
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGL 886 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl 886 (1075)
.+||+|..||||||++..|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.69 E-value=0.14 Score=24.54 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=27.4
Q ss_pred CCCCEEEEECEE-EEECCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 999701451018-89189989999598606999999995
Q 001446 192 PTGNVLVENLTL-KVEPGSNLLITGPNGSGKSSLFRVLG 229 (1075)
Q Consensus 192 ~~~~~~l~~~~l-~i~~G~~~~i~G~~GsGKSTLl~~l~ 229 (1075)
|++-+-|+++-- -+++|+.+.|.|++|+|||+|..-++
T Consensus 9 ~TGi~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 9 RTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp CCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 479377988556899698399999479999999999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.61 E-value=0.1 Score=25.59 Aligned_cols=21 Identities=29% Similarity=0.475 Sum_probs=16.9
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|+.|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.56 E-value=0.13 Score=24.76 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.3
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|.+|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=89.56 E-value=0.13 Score=24.86 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=28.5
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCC
Q ss_conf 508986999849999588999999289999988276489877
Q 001446 860 IVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHI 901 (1075)
Q Consensus 860 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di 901 (1075)
+++...+.+.||+|||||++++.+.+-+... -+.++..++
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~l 81 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEHHHH
T ss_conf 9988867866899888228999999982998--799886994
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.53 E-value=0.12 Score=25.10 Aligned_cols=38 Identities=29% Similarity=0.353 Sum_probs=26.1
Q ss_pred CCCCEEEEECEE-EEECCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 999701451018-89189989999598606999999995
Q 001446 192 PTGNVLVENLTL-KVEPGSNLLITGPNGSGKSSLFRVLG 229 (1075)
Q Consensus 192 ~~~~~~l~~~~l-~i~~G~~~~i~G~~GsGKSTLl~~l~ 229 (1075)
|++.+-|+.+-- -+++|+.+.|.||+|||||||..-++
T Consensus 19 ~TGi~~LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 19 STGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp CCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 779988997426995588799998589898899999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.52 E-value=0.13 Score=24.72 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=16.7
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.51 E-value=0.12 Score=25.00 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89989999598606999999995799
Q 001446 207 PGSNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 207 ~G~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.+..+.|.||.|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=89.46 E-value=0.11 Score=25.37 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6999849999588999999289
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGL 886 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl 886 (1075)
.|||+|..||||||+.+.|..+
T Consensus 4 iIgITG~igSGKStv~~~l~~~ 25 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTDL 25 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9998888878899999999987
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.44 E-value=0.075 Score=26.67 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 8699984999958899999928999
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
-.|+|.|..||||||+++.|.+...
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.38 E-value=0.11 Score=25.33 Aligned_cols=27 Identities=22% Similarity=0.116 Sum_probs=22.0
Q ss_pred EEECCCEEEEECCCCCHHHHHHHHHHC
Q ss_conf 891899899995986069999999957
Q 001446 204 KVEPGSNLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 204 ~i~~G~~~~i~G~~GsGKSTLl~~l~g 230 (1075)
-+++|+.+.|.|++|||||++..-++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=89.34 E-value=0.065 Score=27.12 Aligned_cols=36 Identities=25% Similarity=0.211 Sum_probs=27.3
Q ss_pred CCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 332323423650898699984999958899999928
Q 001446 850 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 850 ~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 885 (1075)
-+-|+.+..=++||+.+.|.|++|+||||++.-+..
T Consensus 22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 366888746978980899994799979999999997
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.29 E-value=0.15 Score=24.34 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.4
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
+++++|+.|+|||||++.+.+-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999619
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=89.28 E-value=0.097 Score=25.79 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=20.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 9899995986069999999957999
Q 001446 209 SNLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 209 ~~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
+++.|.|++||||||+.+.|+..+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989899898999999999998
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=89.26 E-value=0.13 Score=24.77 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=17.1
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
+++++|+.|+|||||++.+.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999648
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.25 E-value=0.15 Score=24.34 Aligned_cols=31 Identities=19% Similarity=0.055 Sum_probs=25.7
Q ss_pred CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 3232342365089869998499995889999992
Q 001446 851 LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 851 ~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 884 (1075)
.+|.+ =+++|+.+.|.|++|||||++..-+.
T Consensus 28 ~~lgG---Gip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 28 KLLGG---GIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp HHTTS---SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred HHHCC---CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 73169---97689799998899887889999999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.20 E-value=0.062 Score=27.30 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898699984999958899999928999
Q 001446 862 PGKSLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 862 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
.+..++|-|+.||||||++.+|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.18 E-value=0.11 Score=25.44 Aligned_cols=21 Identities=29% Similarity=0.648 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 699984999958899999928
Q 001446 865 SLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~r 885 (1075)
|++++|++|+|||||++.|.+
T Consensus 2 KI~liG~~nvGKSSLln~l~~ 22 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKN 22 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999999999999958
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=89.16 E-value=0.13 Score=24.81 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=20.3
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
+++|-||.||||+|+.+.|+.-+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=89.08 E-value=0.16 Score=24.21 Aligned_cols=31 Identities=23% Similarity=0.548 Sum_probs=23.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC---CCCCEEE
Q ss_conf 699984999958899999928999---9988276
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLWP---VVSGSLT 895 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~~---~~~G~I~ 895 (1075)
.|+|-||.||||||+.+.|..-|. ..+|.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdLl 38 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY 38 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHHH
T ss_conf 8997799988989999999999699089888999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.03 E-value=0.28 Score=22.21 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=16.3
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.02 E-value=0.13 Score=24.69 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6999849999588999999289
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGL 886 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl 886 (1075)
.|||.|++||||||+...|...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9983799878899999999999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.00 E-value=0.13 Score=24.70 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=18.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 898699984999958899999928
Q 001446 862 PGKSLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 862 ~Ge~vaIVG~SGsGKSTL~~lL~r 885 (1075)
.+..+.|+|+.|+|||||++.+.+
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 598799986999829999999999
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.90 E-value=0.31 Score=21.82 Aligned_cols=25 Identities=28% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 8999959860699999999579999
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLWPL 234 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~~~ 234 (1075)
+++++|..|+|||||++.+.+....
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~ 29 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDS 29 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999998992999999999728677
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.90 E-value=0.078 Score=26.53 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=24.3
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 5089869998499995889999992899
Q 001446 860 IVPGKSLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 860 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
++.+..+.|.||.||||||+...|..-|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.89 E-value=0.13 Score=24.93 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 699984999958899999928999
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
++.|+|+.||||||+...|..-|.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899987999998999999999869
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.88 E-value=0.057 Score=27.58 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=24.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 69998499995889999992899999882764898775345886727997089988
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYT 920 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I~idg~di~~~~~~r~~i~~VpQdp~L 920 (1075)
.|||+|+|||||||+.+.|....... | .+..+|+||.|-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-~----------------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-G----------------VKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-T----------------CCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C----------------CCEEEEECCCCC
T ss_conf 99998999780999999999997156-9----------------976999477787
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.88 E-value=0.15 Score=24.23 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 699984999958899999928999
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
.+.+.||+|+||||+++++.+-..
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.82 E-value=0.16 Score=24.18 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=16.7
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.82 E-value=0.14 Score=24.51 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=12.1
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
.+.|.||.||||||+.+.|+.-
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999979999999999
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=88.80 E-value=0.14 Score=24.61 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 699984999958899999928999
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
.+.|.|++||||||+++.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989899898999999999998
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.67 E-value=0.18 Score=23.68 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898699984999958899999928999
Q 001446 862 PGKSLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 862 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
.|..|+|-|+-||||||++..|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.64 E-value=0.18 Score=23.72 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898699984999958899999928999
Q 001446 862 PGKSLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 862 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
+|.-|+|-|.-||||||++.+|.....
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.63 E-value=0.15 Score=24.30 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=19.5
Q ss_pred EECCCEEEEECCCCCHHHHHHHHHHC
Q ss_conf 91899899995986069999999957
Q 001446 205 VEPGSNLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 205 i~~G~~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++|+++.|.|++|+|||++..-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 62885999991799998999999999
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=88.59 E-value=0.2 Score=23.29 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.9
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 6508986999849999588999999
Q 001446 859 EIVPGKSLLVTGPNGSGKSSVFRVL 883 (1075)
Q Consensus 859 ~I~~Ge~vaIVG~SGsGKSTL~~lL 883 (1075)
-+++|+.+-|.|++|+|||+++.-+
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 9969839999947999999999999
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.52 E-value=0.17 Score=23.85 Aligned_cols=30 Identities=30% Similarity=0.240 Sum_probs=24.2
Q ss_pred CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 323234236508986999849999588999999
Q 001446 851 LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVL 883 (1075)
Q Consensus 851 ~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL 883 (1075)
..|.+ =+++|+.+.|.|++||||||+..-+
T Consensus 27 ~ll~G---Glp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 27 KLLGG---GIETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp HHHTS---SEESSEEEEEEESTTSSHHHHHHHH
T ss_pred HHHCC---CCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 74269---9558879999858989889999999
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.43 E-value=0.14 Score=24.62 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.4
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.+.+.||+|+||||+.++++..+
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 59998999998499999999997
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.39 E-value=0.092 Score=25.99 Aligned_cols=29 Identities=28% Similarity=0.556 Sum_probs=24.1
Q ss_pred EECCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 91899899995986069999999957999
Q 001446 205 VEPGSNLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 205 i~~G~~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
+++..-+.+.||+|||||+|.+++++.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99887578878998763047788787718
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.38 E-value=0.17 Score=23.82 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=18.3
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
+++++|+.|+|||||++.+.+-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=88.37 E-value=0.15 Score=24.34 Aligned_cols=25 Identities=12% Similarity=0.352 Sum_probs=21.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0898699984999958899999928
Q 001446 861 VPGKSLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 861 ~~Ge~vaIVG~SGsGKSTL~~lL~r 885 (1075)
++.-||.+||+.|||||||+..|..
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 9857999999999898999999966
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.35 E-value=0.17 Score=23.99 Aligned_cols=55 Identities=15% Similarity=0.046 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHC-CCEEEEEEC
Q ss_conf 79349999999998717997--99985799799999999999999813-975999916
Q 001446 316 LSLGEQQRLGMARLFYHKPK--FAILDECTSAVTTDMEERFCAKVRAM-GTSCITISH 370 (1075)
Q Consensus 316 LSgGqkqRi~lARal~~~p~--illlDEpts~LD~~~~~~i~~~l~~~-~~t~i~vtH 370 (1075)
-.....+-.++++.++.++. +++...+...+.......+.+.+... .++++++++
T Consensus 144 ~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~~~r~i~Vltk 201 (299)
T d2akab1 144 PPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITK 201 (299)
T ss_dssp CTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 3147999999999986275603566403454211259999999738677813667702
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.35 E-value=0.19 Score=23.52 Aligned_cols=24 Identities=42% Similarity=0.754 Sum_probs=20.3
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 899995986069999999957999
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
+++++|++|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=88.31 E-value=0.12 Score=25.03 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=20.6
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 899995986069999999957999
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
.+.+.||.|+||||+.+++++.+.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 389889799878889999999849
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.26 E-value=0.14 Score=24.44 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=19.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8699984999958899999928
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~r 885 (1075)
.+|+|+|+.|+|||||++.|.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 9899999999898999999980
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=88.25 E-value=0.16 Score=24.04 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 9989999598606999999995799
Q 001446 208 GSNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 208 G~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.-.+.|+||.||||||+.+.|+--+
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 2169998899998799999999997
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.18 E-value=0.19 Score=23.57 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 69998499995889999992899
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
++.|.|+.||||||+...|..-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.17 E-value=0.19 Score=23.56 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=25.4
Q ss_pred CCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 33232342365089869998499995889999992
Q 001446 850 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 850 ~~vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 884 (1075)
..+|.+ -+++|+.+.|.|++|+|||+++.-+.
T Consensus 24 D~ll~G---Gl~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 24 DSVLGG---GLESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp HHHTTS---SEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHCCC---CCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 972079---86288599999179999899999999
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=88.14 E-value=0.18 Score=23.70 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=17.7
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
.++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=88.12 E-value=0.3 Score=21.97 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=15.7
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.12 E-value=0.17 Score=23.98 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=20.2
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
.++|+|...+|||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.08 E-value=0.13 Score=24.88 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
-+.+.||.|||||++.++++..+
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 79988969998899999986201
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.07 E-value=0.19 Score=23.44 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.4
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 899995986069999999957999
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
.++++|.-.+|||||+++|+|.--
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred EEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 599981898979999999968997
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=88.05 E-value=0.23 Score=22.83 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=25.3
Q ss_pred CCCCCCCE-EECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 32323423-65089869998499995889999992
Q 001446 851 LLARQLTF-EIVPGKSLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 851 ~vL~~iSl-~I~~Ge~vaIVG~SGsGKSTL~~lL~ 884 (1075)
+-|+.+=- =+++|+-+.|.|++|||||+++.-+.
T Consensus 13 ~~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia 47 (242)
T d1tf7a2 13 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFV 47 (242)
T ss_dssp HHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 77988456898698499999189999999999999
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.00 E-value=0.11 Score=25.24 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=6.3
Q ss_pred HCCCCCEEEEECC
Q ss_conf 7179979998579
Q 001446 330 FYHKPKFAILDEC 342 (1075)
Q Consensus 330 l~~~p~illlDEp 342 (1075)
......+.++||-
T Consensus 246 ~v~~~~~~~~dei 258 (443)
T d1g41a_ 246 AVEQNGIVFIDEI 258 (443)
T ss_dssp HHHHHCEEEEETG
T ss_pred HHHCCCCCCCCHH
T ss_conf 8742675554223
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.97 E-value=0.18 Score=23.77 Aligned_cols=20 Identities=35% Similarity=0.320 Sum_probs=10.7
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 89999598606999999995
Q 001446 210 NLLITGPNGSGKSSLFRVLG 229 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~ 229 (1075)
+++++|+.|+|||||++.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~ 25 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFV 25 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999989929899999997
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.90 E-value=0.2 Score=23.36 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=17.6
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
+++++|+.|+|||||++.+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.88 E-value=0.18 Score=23.76 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=16.0
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.+.|+||.||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.88 E-value=0.2 Score=23.42 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=18.1
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
+++++|++|+|||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.87 E-value=0.18 Score=23.62 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=17.4
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
+++++|++|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=87.82 E-value=0.13 Score=24.88 Aligned_cols=22 Identities=41% Similarity=0.721 Sum_probs=20.3
Q ss_pred EEEECCCCCHHHHHHHHHHCCC
Q ss_conf 9999598606999999995799
Q 001446 211 LLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 211 ~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
+.+.||.|||||+|.+++++.+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 8876689888359999999873
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=87.76 E-value=0.18 Score=23.75 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 8998999959860699999999579999
Q 001446 207 PGSNLLITGPNGSGKSSLFRVLGGLWPL 234 (1075)
Q Consensus 207 ~G~~~~i~G~~GsGKSTLl~~l~g~~~~ 234 (1075)
....+.|.||.|+||||+++.++..+..
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 8881688898999899999999999754
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.73 E-value=0.2 Score=23.30 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.1
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|.+|+|||||++.+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=87.69 E-value=0.079 Score=26.50 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 9899995986069999999957999
Q 001446 209 SNLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 209 ~~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
-.++|+|++++|||||++.|.+...
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7899988999989999999858985
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.67 E-value=0.19 Score=23.46 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=17.1
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
+++++|++|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=87.58 E-value=0.13 Score=24.83 Aligned_cols=27 Identities=33% Similarity=0.599 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898699984999958899999928999
Q 001446 862 PGKSLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 862 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
.+..+++|||+|+||||.+.=|.+.+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 977999989999988999999999999
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=87.54 E-value=0.16 Score=24.11 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=22.5
Q ss_pred EEEECCCCCHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 99995986069999999957999994279969
Q 001446 211 LLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 242 (1075)
Q Consensus 211 ~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~ 242 (1075)
+..+||+|+|||-|.+.|+.+.. ..-+.++
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~--~~~ir~D 100 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLD--IPIAISD 100 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CCEEEHH
T ss_conf 24418998637899999986443--5331112
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.49 E-value=0.16 Score=24.10 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 999999999871799799985799799
Q 001446 320 EQQRLGMARLFYHKPKFAILDECTSAV 346 (1075)
Q Consensus 320 qkqRi~lARal~~~p~illlDEpts~L 346 (1075)
++-|-.+.+|-...|.++++||...-.
T Consensus 87 ~~l~~~f~~A~~~~p~il~ideid~l~ 113 (265)
T d1r7ra3 87 ANVREIFDKARQAAPCVLFFDELDSIA 113 (265)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSGGGTC
T ss_pred HHHHHHHHHHHHCCCCCEEHHHHHHCC
T ss_conf 999999999986398435687546324
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=87.48 E-value=0.17 Score=23.98 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=20.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 986999849999588999999289999
Q 001446 863 GKSLLVTGPNGSGKSSVFRVLRGLWPV 889 (1075)
Q Consensus 863 Ge~vaIVG~SGsGKSTL~~lL~rl~~~ 889 (1075)
...+.|+||+|+||||+++.+.+.+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 881688898999899999999999754
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=87.47 E-value=0.26 Score=22.42 Aligned_cols=43 Identities=26% Similarity=0.250 Sum_probs=32.1
Q ss_pred CCCCEEEEE-CE-EEEECCCEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 999701451-01-88918998999959860699999999579999
Q 001446 192 PTGNVLVEN-LT-LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL 234 (1075)
Q Consensus 192 ~~~~~~l~~-~~-l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~ 234 (1075)
|++...|+. +. =-++.|.++.|.||+|||||||+..++.....
T Consensus 36 sTG~~~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~ 80 (263)
T d1u94a1 36 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 80 (263)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 169889999756799667358998057774789999999999870
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.40 E-value=0.36 Score=21.34 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=18.2
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
+++++|+.|+|||||++-+.+-
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.27 E-value=0.21 Score=23.18 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=17.6
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|+.|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.27 E-value=0.23 Score=22.92 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=22.8
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 89999598606999999995799999427
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLWPLVSGH 238 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~~~~~G~ 238 (1075)
.++|+|..-+|||||+++|.|- .+..|.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~-~~~v~n 29 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV-DVEIAN 29 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------
T ss_pred CEEEECCCCCCHHHHHHHHHCC-CCCHHC
T ss_conf 1768899999899999999788-970326
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.19 E-value=0.23 Score=22.91 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=15.3
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=87.19 E-value=0.13 Score=24.76 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 69998499995889999992899999882
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLWPVVSGS 893 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~~~~~G~ 893 (1075)
.+.+.||.|+||||++++|..-+....+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~~ 65 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIHV 65 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 48987999973889999998503888533
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=87.17 E-value=0.2 Score=23.29 Aligned_cols=25 Identities=40% Similarity=0.530 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 9989999598606999999995799
Q 001446 208 GSNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 208 G~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.-.++|+|+.|+|||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.07 E-value=0.23 Score=22.83 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=15.8
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.00 E-value=0.18 Score=23.74 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 69998499995889999992899
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
.+-|.||.|+||||+++++.+-.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69997899974879999999998
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=86.97 E-value=0.19 Score=23.57 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 69998499995889999992899
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
+|||+|+..+|||||++.|.+.-
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=86.92 E-value=0.16 Score=24.16 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=10.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 699984999958899999928
Q 001446 865 SLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~r 885 (1075)
.|.+.||+|||||+++++|..
T Consensus 42 ~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 799889699988999999862
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.89 E-value=0.24 Score=22.71 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=17.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHC
Q ss_conf 9899995986069999999957
Q 001446 209 SNLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 209 ~~~~i~G~~GsGKSTLl~~l~g 230 (1075)
.+++|+|+-||||||+.+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=86.84 E-value=0.21 Score=23.22 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6999849999588999999289
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGL 886 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl 886 (1075)
.|||+|..||||||+.+.|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.84 E-value=0.25 Score=22.59 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=17.7
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.81 E-value=0.17 Score=23.89 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.7
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
-+.+.||+|||||++.++++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCHHHHHHHHHHH
T ss_conf 46876699888308999999874
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.74 E-value=0.18 Score=23.63 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6999849999588999999289
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGL 886 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl 886 (1075)
.+-+.||+|+||||+++++.+-
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 5999899999849999999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.68 E-value=0.19 Score=23.52 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||.+||.+|+|||||+..+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~ 26 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYA 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999919899999997
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.68 E-value=0.24 Score=22.69 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=15.1
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.67 E-value=0.24 Score=22.76 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=18.7
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
+++++|++|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=86.52 E-value=0.16 Score=24.16 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=16.2
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
.++++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999988733
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.50 E-value=0.25 Score=22.65 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=17.0
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.49 E-value=0.081 Score=26.39 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 699984999958899999928
Q 001446 865 SLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~r 885 (1075)
||+++|++|+|||||++.|.+
T Consensus 2 kI~liG~~n~GKSSLin~l~g 22 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLN 22 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999999999999958
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.37 E-value=0.21 Score=23.24 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||+++|++|+|||||++.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~ 23 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYV 23 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999969899999997
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.34 E-value=0.58 Score=19.76 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=21.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8998999959860699999999579
Q 001446 207 PGSNLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 207 ~G~~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
....++|+|..|.|||||.+.+...
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8408999779978889999999985
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=86.24 E-value=0.28 Score=22.20 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89869998499995889999992899
Q 001446 862 PGKSLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 862 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
..-++.|.|+-||||||+...|..-|
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 62169998899998799999999997
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.20 E-value=0.24 Score=22.67 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=20.1
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
+++|.|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.18 E-value=0.26 Score=22.40 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 699984999958899999928
Q 001446 865 SLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~r 885 (1075)
||+|+|.+|+|||||++.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=86.18 E-value=0.23 Score=22.88 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=9.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 699984999958899999928
Q 001446 865 SLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~r 885 (1075)
++||+|+=|+|||||+..|.+
T Consensus 53 ~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 53 RVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 986117998889999999999
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.18 E-value=0.26 Score=22.44 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=18.8
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
+++|+|+.|+|||||++-+.+-
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.07 E-value=0.23 Score=22.93 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.5
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.+.++||+|+|||.|.+.|+..+
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHC
T ss_conf 89997787500699999998633
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.00 E-value=0.27 Score=22.31 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 699984999958899999928
Q 001446 865 SLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~r 885 (1075)
||+++|.+|+|||||++-+..
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.99 E-value=0.29 Score=22.12 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=17.3
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
+++++|..|+|||||++-+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.98 E-value=0.23 Score=22.88 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.5
Q ss_pred EEEECCCCCHHHHHHHHHHCCC
Q ss_conf 9999598606999999995799
Q 001446 211 LLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 211 ~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
+.+.||+|+||||+.++++...
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHH
T ss_conf 9998899987054699999997
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.97 E-value=0.25 Score=22.57 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999849999588999999289
Q 001446 866 LLVTGPNGSGKSSVFRVLRGL 886 (1075)
Q Consensus 866 vaIVG~SGsGKSTL~~lL~rl 886 (1075)
+.+.||.|+|||++++++.+.
T Consensus 41 iLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHH
T ss_conf 687669988830899999987
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.89 E-value=0.29 Score=22.06 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=16.5
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|..|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.87 E-value=0.3 Score=21.96 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 869998499995889999992899
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
-++.|.|+-||||||+.+.|.--|
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699998999999899999999996
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.85 E-value=0.3 Score=21.96 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=15.5
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|..|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=85.82 E-value=0.17 Score=23.94 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=19.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 089869998499995889999992899
Q 001446 861 VPGKSLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 861 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
.+...+++|||+|+||||.+.=|...+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999899998999998899999999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=85.81 E-value=0.23 Score=22.94 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=19.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8699984999958899999928
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~r 885 (1075)
=||++||+.|+|||||++.+.+
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999999899999999964
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=85.78 E-value=0.61 Score=19.56 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=26.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEECCCCC
Q ss_conf 99899995986069999999957999994279969968333464899907899
Q 001446 208 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 260 (1075)
Q Consensus 208 G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~i~~~~~~~~~~~~i~~v~Q~p~ 260 (1075)
...++++||+|+||||.+--|+..+. ..| .+++++.=+.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~-~~g------------~kV~lit~Dt~ 49 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK-GKG------------RRPLLVAADTQ 49 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH-HTT------------CCEEEEECCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH-HCC------------CCEEEEECCCC
T ss_conf 86899989999988999999999999-779------------92799954434
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=85.77 E-value=0.21 Score=23.14 Aligned_cols=11 Identities=27% Similarity=0.283 Sum_probs=3.7
Q ss_pred HHHHHHHHHHH
Q ss_conf 68879999997
Q 001446 996 GEQQRLGMARL 1006 (1075)
Q Consensus 996 GQrQrlaiARA 1006 (1075)
-+.|.....|-
T Consensus 247 ~~~~~~~~lRr 257 (289)
T d1xpua3 247 EELQKMWILRK 257 (289)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=85.71 E-value=0.26 Score=22.42 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 699984999958899999928999
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
.+.+.||.|+||||+++++.+-+.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 389889799878889999999849
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.68 E-value=0.3 Score=21.93 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=17.3
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
+++++|.+|+|||||++.+.+-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=85.61 E-value=0.23 Score=22.92 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=25.0
Q ss_pred EEECCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 891899899995986069999999957999
Q 001446 204 KVEPGSNLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 204 ~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
.++++..+.+.||.|+|||++.++|+++..
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899767699989999888999999999859
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.56 E-value=0.31 Score=21.82 Aligned_cols=20 Identities=40% Similarity=0.544 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||+++|.+|+|||||++.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~ 24 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999979989999999998
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.55 E-value=0.28 Score=22.17 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 699984999958899999928999
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
.|+|.|.-||||||++..|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.54 E-value=0.24 Score=22.72 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||+++|.+|+|||||++-+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~ 23 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYV 23 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999919899999997
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.53 E-value=0.42 Score=20.82 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 699984999958899999928999
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
||.++|..|+|||||++.+.+-..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.47 E-value=0.35 Score=21.49 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||+++|.+|+|||||++-+.
T Consensus 4 Kv~liG~~~vGKSsLi~rl~ 23 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYC 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999989959899999998
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=85.47 E-value=0.46 Score=20.54 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=27.4
Q ss_pred EEEECEEEEECCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 145101889189989999598606999999995799
Q 001446 197 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 197 ~l~~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
+...+-...++| .+.+.||.|||||.|.++|++..
T Consensus 113 ~~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 113 VAEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 898861436886-38887799850889999999986
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.42 E-value=0.24 Score=22.72 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 699984999958899999928
Q 001446 865 SLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~r 885 (1075)
||+++|+.|+|||||++-+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=85.35 E-value=0.32 Score=21.80 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 699984999958899999928999
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
.+.+.||.|+|||++++++.+-+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=85.33 E-value=0.24 Score=22.68 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||.++|++|+|||||+..+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~ 23 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIA 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999989899999997
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.21 E-value=0.18 Score=23.69 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=17.6
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999499999999970
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.15 E-value=0.27 Score=22.32 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=19.8
Q ss_pred EEEECCCCCHHHHHHHHHHCCC
Q ss_conf 9999598606999999995799
Q 001446 211 LLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 211 ~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
+.+.||.|+||||+.++++...
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899877558999999985
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.15 E-value=0.32 Score=21.80 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 699984999958899999928999
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
||+++|.+|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=85.14 E-value=0.31 Score=21.86 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 69998499995889999992899
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
++++||...|||||++++|.|.=
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.12 E-value=0.28 Score=22.26 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 989999598606999999995799
Q 001446 209 SNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 209 ~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
..+.|+||-++|||||++.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 999988999997999999980998
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.08 E-value=0.26 Score=22.52 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||.+||..|+|||||++-+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFT 24 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999939999999996
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.03 E-value=0.31 Score=21.83 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.2
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.00 E-value=0.34 Score=21.53 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=15.1
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.88 E-value=0.33 Score=21.70 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=27.1
Q ss_pred ECEEEEECCCEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 10188918998999959860699999999579
Q 001446 200 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 200 ~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
|.-+.+-+|++.+|.|++|+|||+|+.-++.-
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 10256367887776679998989999999998
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.83 E-value=0.33 Score=21.63 Aligned_cols=21 Identities=24% Similarity=0.607 Sum_probs=17.2
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.77 E-value=0.2 Score=23.29 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=17.9
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|+.|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999088999999984
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.75 E-value=0.34 Score=21.51 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=17.6
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++|+|..|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999899999999964
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=84.72 E-value=0.13 Score=24.78 Aligned_cols=37 Identities=27% Similarity=0.282 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHH-CCCCCCCCEEEECCC
Q ss_conf 9989999598606999999995-799999427996996
Q 001446 208 GSNLLITGPNGSGKSSLFRVLG-GLWPLVSGHIAKPGV 244 (1075)
Q Consensus 208 G~~~~i~G~~GsGKSTLl~~l~-g~~~~~~G~i~~~~~ 244 (1075)
..+++|+|++|||||++++.+. .......+-+.+|..
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~k 87 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN 87 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 26589990799968999999999998479988999687
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.72 E-value=0.38 Score=21.14 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||.+||.+|+|||||++.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~ 24 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999989939999999997
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.69 E-value=0.35 Score=21.44 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=18.2
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
+++++|..|+|||||++.+.+-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=84.64 E-value=0.12 Score=25.01 Aligned_cols=28 Identities=36% Similarity=0.548 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 8998999959860699999999579999
Q 001446 207 PGSNLLITGPNGSGKSSLFRVLGGLWPL 234 (1075)
Q Consensus 207 ~G~~~~i~G~~GsGKSTLl~~l~g~~~~ 234 (1075)
.|..+.+.|+.|+|||||++.+.+++|+
T Consensus 27 ~~h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 27 GIGGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9970899889985299999999873798
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=84.61 E-value=0.51 Score=20.19 Aligned_cols=28 Identities=29% Similarity=0.256 Sum_probs=23.1
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 8999959860699999999579999942
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLWPLVSG 237 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~~~~~G 237 (1075)
++.|-|+-|+||||+++.|........+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~ 35 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSP 35 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 9999888667899999999998656997
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.61 E-value=0.35 Score=21.43 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=18.8
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 869998499995889999992
Q 001446 864 KSLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~ 884 (1075)
-||+|+|.+|+|||||+..+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~ 25 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFV 25 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 389999989929899999997
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=84.52 E-value=0.48 Score=20.37 Aligned_cols=42 Identities=14% Similarity=0.122 Sum_probs=30.3
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EECCCC
Q ss_conf 365089869998499995889999992899999882-764898
Q 001446 858 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS-LTKPSQ 899 (1075)
Q Consensus 858 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~-I~idg~ 899 (1075)
==+++|..+-|.|++||||||+..-+..-..-..|. +.+|..
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE 91 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 91 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9966735899805777478999999999987089879998654
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.48 E-value=0.38 Score=21.16 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=14.6
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
++.++|..|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999970
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.43 E-value=0.37 Score=21.30 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 699984999958899999928
Q 001446 865 SLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~r 885 (1075)
||.++|.+|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=84.43 E-value=0.28 Score=22.17 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=20.9
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 508986999849999588999999289
Q 001446 860 IVPGKSLLVTGPNGSGKSSVFRVLRGL 886 (1075)
Q Consensus 860 I~~Ge~vaIVG~SGsGKSTL~~lL~rl 886 (1075)
|++.. |||+|+..+|||||+..|.+-
T Consensus 3 ~r~p~-IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSPI-VSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCCE-EEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCE-EEEEECCCCCHHHHHHHHHHH
T ss_conf 89987-999969985499999999823
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=84.42 E-value=0.32 Score=21.79 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=14.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0898699984999958899999928999
Q 001446 861 VPGKSLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 861 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
+||..|.+.|+=||||||+++.+.+-+-
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9982999966877658899999876422
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.36 E-value=0.36 Score=21.35 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 699984999958899999928
Q 001446 865 SLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~r 885 (1075)
||.++|..|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=84.32 E-value=0.46 Score=20.50 Aligned_cols=29 Identities=34% Similarity=0.360 Sum_probs=23.3
Q ss_pred CEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 23650898699984999958899999928
Q 001446 857 TFEIVPGKSLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 857 Sl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 885 (1075)
++-.-.|.-|.|+|+||+||||+...|.+
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99999999999980899999999999998
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.30 E-value=0.31 Score=21.90 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.0
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.++++|.-.+|||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.28 E-value=0.24 Score=22.69 Aligned_cols=20 Identities=45% Similarity=0.677 Sum_probs=9.8
Q ss_pred EEEECCCCCHHHHHHHHHHC
Q ss_conf 99995986069999999957
Q 001446 211 LLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 211 ~~i~G~~GsGKSTLl~~l~g 230 (1075)
+.+.||.|+||||+.++++.
T Consensus 36 lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99889999988999999997
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.26 E-value=0.37 Score=21.25 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=18.2
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 89999598606999999995
Q 001446 210 NLLITGPNGSGKSSLFRVLG 229 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~ 229 (1075)
-++|+|+.|+|||||.-.|+
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=84.19 E-value=0.36 Score=21.34 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 98699984999958899999928999
Q 001446 863 GKSLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 863 Ge~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
+..+.+|||+|+||||.+.-|...+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 86899989999988999999999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.17 E-value=0.28 Score=22.22 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHH-C----CCCCCCCEE
Q ss_conf 69998499995889999992-8----999998827
Q 001446 865 SLLVTGPNGSGKSSVFRVLR-G----LWPVVSGSL 894 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~-r----l~~~~~G~I 894 (1075)
||.++|.+|+|||||++-+. + -|.|+.|..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 89999999979999999997399885457664520
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=83.92 E-value=0.36 Score=21.41 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89989999598606999999995799
Q 001446 207 PGSNLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 207 ~G~~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.+-.++|+|...+|||||+++|.+--
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 87379997899998999999997789
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.92 E-value=0.4 Score=21.02 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=17.2
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|.+|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999899899999999970
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.81 E-value=0.38 Score=21.16 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=17.3
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
+++++|+.|+|||||++-+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999699999999971
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=83.65 E-value=0.24 Score=22.78 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 898699984999958899999928999
Q 001446 862 PGKSLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 862 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
+-..+++|||+|+||||.+.=|...+.
T Consensus 8 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 8 APFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 997999989999998999999999999
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.62 E-value=0.32 Score=21.81 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6999849999588999999289
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGL 886 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl 886 (1075)
.+-+.||.|+||||+++++.+-
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHH
T ss_conf 4999889998705469999999
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.59 E-value=0.32 Score=21.72 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||.++|.+|+|||||++-+.
T Consensus 7 KivviG~~~vGKTsli~~~~ 26 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYT 26 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999979999999997
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.39 E-value=0.46 Score=20.57 Aligned_cols=22 Identities=36% Similarity=0.280 Sum_probs=19.0
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8999959860699999999579
Q 001446 210 NLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
+++++|..|+|||||++.+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999719
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=83.27 E-value=0.29 Score=22.10 Aligned_cols=31 Identities=23% Similarity=0.212 Sum_probs=26.6
Q ss_pred EEECCCEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 8918998999959860699999999579999
Q 001446 204 KVEPGSNLLITGPNGSGKSSLFRVLGGLWPL 234 (1075)
Q Consensus 204 ~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~ 234 (1075)
..++|.++++.|+-|+||||+.+.++.-+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.26 E-value=0.31 Score=21.83 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=18.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8699984999958899999928
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~r 885 (1075)
-||.++|.+|+|||||+.-+..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899388999999971
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.23 E-value=0.45 Score=20.59 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=18.6
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
-++|+|..++|||||+..|++
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999994789849999999999
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.16 E-value=0.48 Score=20.41 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||.++|.+|+|||||++-+.
T Consensus 6 KivlvG~~~vGKTsli~~~~ 25 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFT 25 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999949899999997
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.09 E-value=0.45 Score=20.60 Aligned_cols=19 Identities=32% Similarity=0.627 Sum_probs=9.7
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 6999849999588999999
Q 001446 865 SLLVTGPNGSGKSSVFRVL 883 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL 883 (1075)
||.++|.+|+|||||+.-+
T Consensus 4 KivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999989999989999988
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.09 E-value=0.35 Score=21.44 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||.++|..|+|||||++-+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~ 24 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYC 24 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999939899999998
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=83.03 E-value=0.6 Score=19.62 Aligned_cols=22 Identities=32% Similarity=0.712 Sum_probs=13.8
Q ss_pred EEEECCCCCHHHHHHHHHHCCC
Q ss_conf 9999598606999999995799
Q 001446 211 LLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 211 ~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
++|+|...+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.85 E-value=0.36 Score=21.35 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8699984999958899999928
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~r 885 (1075)
=||.++|..|+|||||++.+..
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 2899999899088999999971
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=82.75 E-value=0.44 Score=20.69 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
.|||+|.-||||||+.+.|.
T Consensus 3 iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99997999988999999999
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.75 E-value=0.34 Score=21.58 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||.++|..|+|||||++-+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~ 21 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFM 21 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999989909899999998
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.73 E-value=0.48 Score=20.36 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||.|+|+.|+|||||++-+.
T Consensus 8 KivvvG~~~vGKTsli~~l~ 27 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFS 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999909899999996
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=82.65 E-value=0.46 Score=20.51 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.7
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 899995986069999999957
Q 001446 210 NLLITGPNGSGKSSLFRVLGG 230 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g 230 (1075)
-++|+|+.|+|||||...|+.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999994889809999999999
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.60 E-value=0.48 Score=20.36 Aligned_cols=28 Identities=36% Similarity=0.477 Sum_probs=16.1
Q ss_pred EEEEECCCCCHHHHHHHHHH-CCCCCCCC
Q ss_conf 89999598606999999995-79999942
Q 001446 210 NLLITGPNGSGKSSLFRVLG-GLWPLVSG 237 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~-g~~~~~~G 237 (1075)
++.++|.+|+|||||++-+. +...|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 79999899998899999895098278888
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.49 E-value=0.36 Score=21.34 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6999849999588999999289
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGL 886 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl 886 (1075)
.+-+.||.|+||||+++++.+-
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 5999889987755899999998
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=82.47 E-value=0.51 Score=20.15 Aligned_cols=24 Identities=25% Similarity=0.636 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 699984999958899999928999
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
.|||+|.-.+|||||+..|.+.+.
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999993458849999999970344
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.35 E-value=0.38 Score=21.18 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=25.6
Q ss_pred CCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 232342365089869998499995889999992899
Q 001446 852 LARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLW 887 (1075)
Q Consensus 852 vL~~iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 887 (1075)
+|++++ +|=..|+|+|+.++|||||++.|++-.
T Consensus 24 ~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 997079---987999988999997999999980998
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.29 E-value=0.4 Score=21.01 Aligned_cols=20 Identities=30% Similarity=0.518 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||.++|++|+|||||++-+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~ 27 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYV 27 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999979999999998
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.27 E-value=0.37 Score=21.27 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||.++|..|+|||||++-+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~ 27 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFI 27 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999979969899999997
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.21 E-value=0.4 Score=20.97 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||.++|.+|+|||||++-+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~ 23 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFC 23 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999929899999997
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.15 E-value=0.41 Score=20.94 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||++||.+|+|||||++-+.
T Consensus 6 Ki~lvG~~~vGKTsli~rl~ 25 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFV 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999989949999999997
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.12 E-value=0.41 Score=20.93 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||.+||.+|+|||||++-+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~ 23 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFL 23 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999989978999999997
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.02 E-value=0.57 Score=19.83 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||.++|..|+|||||+.-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999949899999998
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.91 E-value=0.58 Score=19.78 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||+++|..|+|||||+.-+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~ 24 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999919899999997
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=81.88 E-value=0.35 Score=21.47 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=18.8
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.+.++|++|+|||||++.+.+-.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999987899999984488
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.58 E-value=0.48 Score=20.40 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=21.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 9899995986069999999957999
Q 001446 209 SNLLITGPNGSGKSSLFRVLGGLWP 233 (1075)
Q Consensus 209 ~~~~i~G~~GsGKSTLl~~l~g~~~ 233 (1075)
.+++|-|+-||||||+++.|...+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989988859999999999873
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=81.52 E-value=0.47 Score=20.49 Aligned_cols=43 Identities=16% Similarity=0.211 Sum_probs=29.3
Q ss_pred HCCCCCEEEEECCCCCC-CHHHHHHHHHHH---HHCCCEEEEEECCH
Q ss_conf 71799799985799799-999999999999---81397599991692
Q 001446 330 FYHKPKFAILDECTSAV-TTDMEERFCAKV---RAMGTSCITISHRP 372 (1075)
Q Consensus 330 l~~~p~illlDEpts~L-D~~~~~~i~~~l---~~~~~t~i~vtH~~ 372 (1075)
.+...+++++||.-.-. +...+..++..+ .+.++.+|+.+...
T Consensus 94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~ 140 (213)
T d1l8qa2 94 MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 140 (213)
T ss_dssp HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 87621301011265505865778899999998763166389954875
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=81.39 E-value=0.9 Score=18.28 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 998999959860699999999579
Q 001446 208 GSNLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 208 G~~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
+-.++|+|-..+|||||+++|.+-
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 834888899999889999999779
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.30 E-value=0.42 Score=20.86 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 699984999958899999928999
Q 001446 865 SLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
.++|-|.-||||||+++.|..-+.
T Consensus 4 ~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989988859999999999873
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=81.24 E-value=0.58 Score=19.76 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=13.6
Q ss_pred EEEECCCCCHHHHHHHHHHCC
Q ss_conf 999959860699999999579
Q 001446 211 LLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 211 ~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
+.|.||+|||||-|+++++..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 799888998399999999987
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=81.23 E-value=0.29 Score=22.09 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=20.1
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 5089869998499995889999992
Q 001446 860 IVPGKSLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 860 I~~Ge~vaIVG~SGsGKSTL~~lL~ 884 (1075)
=++-=||.++|++|+|||||++-+.
T Consensus 14 ~~k~~KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 14 SNKELRILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp CSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 8966899999999998899998873
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=81.23 E-value=0.42 Score=20.80 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=20.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 98699984999958899999928999
Q 001446 863 GKSLLVTGPNGSGKSSVFRVLRGLWP 888 (1075)
Q Consensus 863 Ge~vaIVG~SGsGKSTL~~lL~rl~~ 888 (1075)
...+++|||+|+||||.+.=|...+.
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98999989999998999999999999
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.22 E-value=0.49 Score=20.35 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=5.8
Q ss_pred EECCCCCCHHHHHHHHHC
Q ss_conf 984999958899999928
Q 001446 868 VTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 868 IVG~SGsGKSTL~~lL~r 885 (1075)
++||||+|||.|++.|.+
T Consensus 57 f~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 57 FAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHH
T ss_conf 977875006999999986
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=81.07 E-value=0.53 Score=20.03 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=10.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 699984999958899999928
Q 001446 865 SLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~r 885 (1075)
+|||||..-+|||||+++|.+
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~ 22 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATL 22 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHHC
T ss_conf 176889999989999999978
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=80.87 E-value=0.46 Score=20.54 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=33.9
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-ECCCCCCCCC
Q ss_conf 3650898699984999958899999928999998827-6489877534
Q 001446 858 FEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL-TKPSQHIDEE 904 (1075)
Q Consensus 858 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~~~~G~I-~idg~di~~~ 904 (1075)
-.++++..+.++||.|+|||+++.+|.++.. |.+ .+++.+.+..
T Consensus 149 ~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~rs~ 193 (362)
T d1svma_ 149 YNIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLDRLN 193 (362)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTTTHH
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEECCCHHHH
T ss_conf 2899767699989999888999999999859---97899977420118
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=80.84 E-value=0.61 Score=19.56 Aligned_cols=32 Identities=22% Similarity=0.192 Sum_probs=26.0
Q ss_pred ECEEEEECCCEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 10188918998999959860699999999579
Q 001446 200 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL 231 (1075)
Q Consensus 200 ~~~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~ 231 (1075)
|.=+.+-+|++.+|.|++|+|||+|+..+..-
T Consensus 59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~ 90 (276)
T d1fx0a3 59 DAMIPVGRGQRELIIGDRQTGKTAVATDTILN 90 (276)
T ss_dssp TTTSCCBTTCBCBEEESSSSSHHHHHHHHHHT
T ss_pred ECCCCCCCCCEEEECCCCCCCHHHHHHHHHHH
T ss_conf 50145467766760067788857999997765
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.59 E-value=0.45 Score=20.61 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||+++|..|+|||||+.-+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~ 26 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFI 26 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999909999999997
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=80.57 E-value=0.52 Score=20.10 Aligned_cols=20 Identities=35% Similarity=0.428 Sum_probs=9.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
.|+|+|..|.|||||++.+.
T Consensus 46 ~v~I~GmgGiGKTtLA~~v~ 65 (277)
T d2a5yb3 46 FLFLHGRAGSGKSVIASQAL 65 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89997799788899999999
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.57 E-value=0.31 Score=21.87 Aligned_cols=47 Identities=26% Similarity=0.323 Sum_probs=31.2
Q ss_pred CCCCEEEEE-C-EEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 999701451-0-1889189989999598606999999995799999427
Q 001446 192 PTGNVLVEN-L-TLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 238 (1075)
Q Consensus 192 ~~~~~~l~~-~-~l~i~~G~~~~i~G~~GsGKSTLl~~l~g~~~~~~G~ 238 (1075)
|++...|+. + +=-++.|.++.+.||+|||||||+..++.......|.
T Consensus 42 ~TG~~~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~ 90 (269)
T d1mo6a1 42 PTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGV 90 (269)
T ss_dssp CCSCHHHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 2687889875566986663369996488748899999999987548988
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.51 E-value=0.33 Score=21.65 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 699984999958899999928
Q 001446 865 SLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~r 885 (1075)
||.++|..|+|||||+..|.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999499999999970
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=80.46 E-value=0.3 Score=22.02 Aligned_cols=23 Identities=22% Similarity=0.082 Sum_probs=19.7
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89999598606999999995799
Q 001446 210 NLLITGPNGSGKSSLFRVLGGLW 232 (1075)
Q Consensus 210 ~~~i~G~~GsGKSTLl~~l~g~~ 232 (1075)
.+.++||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89967899989999999999998
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.45 E-value=0.55 Score=19.94 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 69998499995889999992
Q 001446 865 SLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~ 884 (1075)
||.|+|.+|+|||||++-+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999989999999996
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.45 E-value=0.51 Score=20.20 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.5
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 869998499995889999992
Q 001446 864 KSLLVTGPNGSGKSSVFRVLR 884 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~ 884 (1075)
=||.++|.+|+|||||++-+.
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~ 25 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFF 25 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 799999989959899999997
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.33 E-value=0.62 Score=19.53 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=25.6
Q ss_pred CCEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 423650898699984999958899999928
Q 001446 856 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 856 iSl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 885 (1075)
.=+.+-.|||++|.|.+|+|||+|+.-+.+
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 025636788777667999898999999999
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=80.26 E-value=0.51 Score=20.20 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHH-----CCCCCCCCE
Q ss_conf 69998499995889999992-----899999882
Q 001446 865 SLLVTGPNGSGKSSVFRVLR-----GLWPVVSGS 893 (1075)
Q Consensus 865 ~vaIVG~SGsGKSTL~~lL~-----rl~~~~~G~ 893 (1075)
||.++|.+|+|||||++.+. .-|+|+.|.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~ 39 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD 39 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 9999998995889999999729998654775343
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.10 E-value=0.57 Score=19.80 Aligned_cols=22 Identities=36% Similarity=0.312 Sum_probs=18.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8699984999958899999928
Q 001446 864 KSLLVTGPNGSGKSSVFRVLRG 885 (1075)
Q Consensus 864 e~vaIVG~SGsGKSTL~~lL~r 885 (1075)
=||+++|.+|+|||||+.-+..
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899789999999971
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