Citrus Sinensis ID: 001448

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070-----

MPRSYVREDVPLSRFGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPNIKPAMDIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVGLLAGLKALLNLRPQTLGSEVLNSIQAIFLSILAEGDICASQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIEERIEGNLFHMLDEETDSEYVKSYTLCLAYFSSFYAFYLENEYLPCF

ccccccccccccccccHHHHcHHHHHHcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccc

cccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccHHHcccccccHHHHHHHHHHHHHHHHHHcccEccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHHHHHHHHHccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHcccccccccccccccccHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHcc

mprsyvredvplsrFGVLVAQLESIVAsasqqspdpllCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIiskgdnisvYSRVSSlqgflsdgkksepqkVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALegsggsaaASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAhiggpclgvgeldnsaTHCVKAIEDPIASVRDAFAEALGSLLAlgmnpqaqvqpkgkgpfppakklegglqrhlalpftrangaksknmrVNLTLSWVYFLQAIRLKyfhpdselqDYALQVMDMLRADIFVDSHALACVLYILRIgvtdqmteptQRSFLVFLGKqlqavdaspfMKIAALRTLSYTLKtlgevpsefKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRenvsfekgSSLMVELDSLHGQATVVAALIFispklplgyparlpKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLAsmpkeeleDQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRCFlspdaansgillQPVMVYLSRALSYISTIAakelpnikpamDIFIIRTLIAyqslpdpvsyksdhpqliklcttpyrdasaceeSSCLRLLLDkrdawlgpwipgrdwfedelcafqggkdglmpcvwenevssfpqpetIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVGLLAGLKALLnlrpqtlgsEVLNSIQAIFLSILAEGDICASQRRALLlgdltvvtdanyaGSIALAIGCIHRSAGGMALSSLVPATMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVlgpelapgsiffsrckvsawqcsspkwsvrFTQQLVLfapqavsvHSHVQTLLSTLSSRQPILRHLAVSTLRHLiekdpdsvIEERIEGnlfhmldeetdseyVKSYTLCLAYFSSFYAFYleneylpcf

mprsyvredvplsrFGVLVAQLESIVAsasqqspdPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRiiskgdnisVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPftrangaksknmRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIaakelpnikPAMDIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVGLLAGLKALLNLRPQTLGSEVLNSIQAIFLSILAEGDICASQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLstlssrqpILRHLAVSTLRhliekdpdsvIEERIEGNLFHMLDEETDSEYVKSYTLCLAYFSSFYAFYLENEYLPCF

MPRSYVREDVPLSRFGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRqeallllqnalegsggsaaasaYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQAQVQpkgkgpfppakkLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWlllssllASMPKEELEDQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPNIKPAMDIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVgllaglkallnlRPQTLGSEVLNSIQAIFLSILAEGDICASQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIEERIEGNLFHMLDEETDSEYVKSYTLCLAYFSSFYAFYLENEYLPCF

*********VPLSRFGVLVAQLESIVAS******DPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGF***********VAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALG****************************LALPFTRA****SKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLT****NTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPNIKPAMDIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVGLLAGLKALLNLRPQTLGSEVLNSIQAIFLSILAEGDICASQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIEERIEGNLFHMLDEETDSEYVKSYTLCLAYFSSFYAFYLENEYLP**

************SRFGVLVA*****************LCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLS*****EPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLA***********************************************VNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLN******************DSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLT********ATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLF*************LTSKICVLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALS*****************DIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQ**********HAASVTNICVGLLAGLK******************QAIFLSILAEGDICASQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIEERIEGNLFHMLDEETDSEYVKSYTLCLAYFSSFYAFYLENEYLPCF

MPRSYVREDVPLSRFGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQ***************GAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALE********SAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQ*********PFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPNIKPAMDIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLK********AASVTNICVGLLAGLKALLNLRPQTLGSEVLNSIQAIFLSILAEGDICASQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIEERIEGNLFHMLDEETDSEYVKSYTLCLAYFSSFYAFYLENEYLPCF

*****VREDVPLSRFGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNPQ********GPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPNIKPAMDIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGLMPCVWENEVSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVGLLAGLKALLNLRPQTLGSEVLNSIQAIFLSILAEGDICASQRRALLLGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIEERIEGNLFHMLDEETDSEYVKSYTLCLAYFSSFYAFYLENEYLPCF

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1075	2.2.26 [Sep-21-2011]
Q9P2D3		2071	HEAT repeat-containing pr	yes	no	0.902	0.468	0.247	3e-49
A1A5F2		2052	HEAT repeat-containing pr	yes	no	0.898	0.470	0.249	5e-49
Q8C547		2070	HEAT repeat-containing pr	yes	no	0.900	0.467	0.244	6e-48
Q5PRF0		2038	HEAT repeat-containing pr	no	no	0.870	0.459	0.248	4e-42
A0JP94		2021	HEAT repeat-containing pr	no	no	0.866	0.461	0.249	7e-38
Q86XA9		2040	HEAT repeat-containing pr	no	no	0.863	0.454	0.237	4e-37
Q8JFV4		1998	HEAT repeat-containing pr	no	no	0.586	0.315	0.251	1e-26

>sp\|Q9P2D3\|HTR5B_HUMAN HEAT repeat-containing protein 5B OS=Homo sapiens GN=HEATR5B PE=1 SV=2	Back alignment and function desciption

 Score =  197 bits (502), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 275/1113 (24%), Positives = 477/1113 (42%), Gaps = 143/1113 (12%)

Query: 32   QSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGR 91
            ++  P+  F+ L  L   +    K  +   Q+K  + L  L+      P R L +  +  
Sbjct: 19   EAKRPVFIFEWLRFLDKVLVAANKTDVKEKQKKLVEQLTGLISSSPGPPTRKLLAKNLAA 78

Query: 92   IISKGDNISVYSRVSSLQGFLSDGKKSE---PQKVAGAAQCLGELYRQFGRRITSGLLET 148
            + S GD  +V+  +      + +   +    P K+A  A C+G  Y + GR + S   ET
Sbjct: 79   LYSIGDTFTVFQTLDKCNDIIRNKDDTAAYLPTKLAAVA-CVGAFYEKMGRMLGSAFPET 137

Query: 149  TIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRI 208
                 K +K  E   R E L+ LQ  L G GG AAAS++ + ++   R  + D+S  VR 
Sbjct: 138  VNNLLKSLKSAESQGRSEILMSLQKVLSGLGG-AAASSHRDIYK-NARSLLTDRSMAVRC 195

Query: 209  AGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNP-Q 267
            A A+CL    +     +   EL+N AT C KA+E+    VR A ++ LG+++A  + P Q
Sbjct: 196  AVAKCLLELQN-EAVFMWTAELENIATLCFKALENSNYGVRVAVSKLLGTVMATALMPKQ 254

Query: 268  AQV--QPKGKGPFPPAKKLEG-GLQR------HLALPFTRANGAKSKNMRVNLTLSWVYF 318
            A V  Q   +  F    +L   G  R             +  G+ ++ +RV +T ++V F
Sbjct: 255  ATVMRQNVKRATFDEVLELMATGFLRGGSGFLKSGGEMLKVGGSVNREVRVGVTQAYVVF 314

Query: 319  LQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALA-----CVLYILRIGVTDQMTEP 373
            +  +  ++   +     +   V+D++       +H  A     CV +ILR  V   + E 
Sbjct: 315  VTTLGGQWL--ERSFATFLSHVLDLVSHPRATQTHVEAVYSRRCVSFILRATVGSLLGEK 372

Query: 374  TQ----RSFLVFLGKQLQAVDA------------------SPFMKIAALRTLSYTLKTLG 411
             Q    +     +GKQ++AV+A                  S  + + AL+ L   +++L 
Sbjct: 373  AQIAAAKEICQAIGKQMKAVEAVVNDTSGENKSGAADIAASQHVMVCALQELGSLVQSLN 432

Query: 412  EVPS----EFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLN 467
               S    E    L   V + + H S   R+ AA  LR +A   P  ++  +      LN
Sbjct: 433  ATASPLIQEASIGLLEIVTSVLLHPSMAARLAAAWCLRCVAVALPFQLTPFLDRCAERLN 492

Query: 468  ALRENVSFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTE 527
             L+ +             +++ G +  +AAL+    + PLG P    K+V+ +++ +L  
Sbjct: 493  NLKTSP------------EAVSGYSFAMAALLGGVHQCPLGIPHAKGKMVVSIAEDLLRT 540

Query: 528  SSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHII--KQHG 585
            +++N+  +    +AGWLLL +L+   P   +   +  +L LW  +F  + + +   K  G
Sbjct: 541  AAQNSRLSLQRTQAGWLLLGALMTLGPSV-VRYHLPKMLLLWRNVFPRSLKELEAEKARG 599

Query: 586  DLTSKICVLSTAVDALTAFVRCFLS--PDAANSGI---LLQPVMVYLSRALSYISTIAAK 640
            D  +    L     AL A +R F++  P+     +   L+ P+   ++  +S+I ++   
Sbjct: 600  DSFTWQVTLEGRAGALCA-MRSFVAHCPELLTEDVIRKLMTPIECAMT-MMSHIPSVMKA 657

Query: 641  ELPNIKPAMDIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYR--DASACEESSCLRL 698
               ++K +  +  +R       LP P +Y+     L++     +   D SA   +S LR 
Sbjct: 658  HGAHLKASAAMVRLRLYDILALLP-PKTYEGSFNALLRELVAEFTLTDNSANTTTSLLRS 716

Query: 699  LLDKRDA-WLGPWIPGRDW--FEDELCAFQGGKDGLMPCVWENEVSSF----------PQ 745
            L    D+  LG W+   D    ED+L        G +    E++ SS           P 
Sbjct: 717  LCHYDDSVLLGSWLQETDHKSIEDQLQPNSASGSGAL----EHDPSSIYLRIPAGEAVPG 772

Query: 746  PETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICVGLL 805
            P  +  ++++  +  FG++F        L +L    +C+K  K     A  + NI   +L
Sbjct: 773  PLPLGVSVIDASVALFGVVFPHVSYKHRLQMLDHFAECVKQAKGVRQQAVQL-NIFTAVL 831

Query: 806  AGLKALLNLRPQTLG-SEVLNSIQAIFLSILAEGD---ICASQ----RRALLLGDLTVVT 857
            + LK L   +  TLG  EV  S   + +  L   +    CA+     R A ++G+ T + 
Sbjct: 832  SALKGLAENK-STLGPEEVRKSALTLVMGPLDNPNPILRCAAGEALGRMAQVVGEATFIA 890

Query: 858  D-ANYA-------------GSIALAIGCIHRSAGGMALSSLVPATM-------------- 889
              A Y+                +LA+GC+HR  GG+     +  ++              
Sbjct: 891  RMAQYSFDKLKSARDVVSRTGHSLALGCLHRYVGGIGSGQHLKTSVSILLALAQDGTSPE 950

Query: 890  ---WSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVL 946
               WSLH L L ++++G  +  +V+ TL L + +LL+      ++ Q +GR + AI+  +
Sbjct: 951  VQTWSLHSLALIVDSSGPMYRGYVEPTLSLVLTLLLTVPPSHTEVHQCLGRCLGAIITTV 1010

Query: 947  GPEL----APGSIFFSRCKVSAWQCSSPKWS------VRFTQQLVLFAPQAVSVHSHVQT 996
            GPEL    A  S   S C V          S      +   QQL +FAP+ V++ S V +
Sbjct: 1011 GPELQGNGATTSTIRSSCLVGCAITQDHSDSLVQAAAISCLQQLHMFAPRHVNLSSLVPS 1070

Query: 997  LLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIE 1029
            L   L S   +LR  AV+ LR L +++   V E
Sbjct: 1071 LCVHLCSSHLLLRRAAVACLRQLAQREAAEVCE 1103

Homo sapiens (taxid: 9606)

>sp\|A1A5F2\|HTR5B_XENTR HEAT repeat-containing protein 5B OS=Xenopus tropicalis GN=heatr5b PE=2 SV=1	Back alignment and function description

>sp\|Q8C547\|HTR5B_MOUSE HEAT repeat-containing protein 5B OS=Mus musculus GN=Heatr5b PE=2 SV=3	Back alignment and function description

>sp\|Q5PRF0\|HTR5A_MOUSE HEAT repeat-containing protein 5A OS=Mus musculus GN=Heatr5a PE=2 SV=2	Back alignment and function description

>sp\|A0JP94\|HTR5A_XENTR HEAT repeat-containing protein 5A OS=Xenopus tropicalis GN=heatr5a PE=2 SV=1	Back alignment and function description

>sp\|Q86XA9\|HTR5A_HUMAN HEAT repeat-containing protein 5A OS=Homo sapiens GN=HEATR5A PE=1 SV=2	Back alignment and function description

>sp\|Q8JFV4\|HTR5A_DANRE HEAT repeat-containing protein 5A OS=Danio rerio GN=heatr5a PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1075
359488185		2264	PREDICTED: HEAT repeat-containing protei	0.973	0.462	0.793	0.0
296087293		2315	unnamed protein product [Vitis vinifera]	0.973	0.452	0.756	0.0
449482284		2218	PREDICTED: HEAT repeat-containing protei	0.986	0.477	0.750	0.0
449447703		2223	PREDICTED: HEAT repeat-containing protei	0.986	0.476	0.744	0.0
356567286		2349	PREDICTED: HEAT repeat-containing protei	0.964	0.441	0.766	0.0
334183701		2222	HEAT repeat-containing protein [Arabidop	0.971	0.469	0.711	0.0
334183699		2223	HEAT repeat-containing protein [Arabidop	0.971	0.469	0.711	0.0
240254326		2221	HEAT repeat-containing protein [Arabidop	0.971	0.470	0.711	0.0
255551368		2035	conserved hypothetical protein [Ricinus	0.866	0.457	0.720	0.0
218198270		2232	hypothetical protein OsI_23125 [Oryza sa	0.979	0.471	0.629	0.0

>gi\|359488185\|ref\|XP_002279980.2\| PREDICTED: HEAT repeat-containing protein 5B-like [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1699 bits (4401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 866/1091 (79%), Positives = 957/1091 (87%), Gaps = 44/1091 (4%)

Query: 1    MPRSYVREDVPLSRFGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILL 60
            M + YVRE+VPLSRFGVLVAQLESIVAS+SQQ PD LLCFDLLSDLISAIDEEPKESILL
Sbjct: 1    MAKKYVRENVPLSRFGVLVAQLESIVASSSQQPPDALLCFDLLSDLISAIDEEPKESILL 60

Query: 61   WQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEP 120
            WQRKCEDALYSLLILGARRPVRHLASVAM RIISKGD IS+YSR S+LQGFLSDGK+SEP
Sbjct: 61   WQRKCEDALYSLLILGARRPVRHLASVAMARIISKGDTISIYSRASTLQGFLSDGKRSEP 120

Query: 121  QKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGG 180
            Q++AGAAQCLGELYR FGRRITSGLLETTIIA KLMKF+EEFVR EAL +LQNALEGSGG
Sbjct: 121  QRLAGAAQCLGELYRLFGRRITSGLLETTIIATKLMKFHEEFVRLEALHMLQNALEGSGG 180

Query: 181  SAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKA 240
            SAA+SAYSEAFRLIMRFA+ DKSF+VRIA ARCL+AFA+IGGP LG GE DNSA++CVK 
Sbjct: 181  SAASSAYSEAFRLIMRFAVGDKSFIVRIAAARCLRAFANIGGPGLGAGEFDNSASYCVKV 240

Query: 241  IEDPIASVRDAFAEALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRAN 300
            ++DP++SVRDAFAEALG+L+ALGMNP+AQVQPKGKG   P KKLEGGLQR+L LPF +A+
Sbjct: 241  LDDPVSSVRDAFAEALGALVALGMNPEAQVQPKGKGHVTPTKKLEGGLQRYLVLPFVKAS 300

Query: 301  GAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLY 360
            G + KN+R+ LT SWV+FLQAIRLKY HPDSELQ++ALQ+MDMLRAD  VD+ ALACVLY
Sbjct: 301  GVRLKNIRIGLTFSWVFFLQAIRLKYLHPDSELQNFALQIMDMLRADSSVDAQALACVLY 360

Query: 361  ILRIGVTDQMTEPTQRSFLVFLGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEV 420
            ILR+GVTDQMTEPTQRSFLV LGKQLQ+ D SPFM +AALRTLSYTLKTLGEVP EFKEV
Sbjct: 361  ILRVGVTDQMTEPTQRSFLVLLGKQLQSPDLSPFMAVAALRTLSYTLKTLGEVPLEFKEV 420

Query: 421  LDSTVVAAVSHSSQLVRIEAALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSS 480
            LD+TVVAA+SHSSQLVRIEAALTLRALAEVDPTCV GL++YGVTTLNALRENVSFEKGS+
Sbjct: 421  LDNTVVAAMSHSSQLVRIEAALTLRALAEVDPTCVGGLVSYGVTTLNALRENVSFEKGSN 480

Query: 481  LMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKE 540
            L VELDSLHGQA V+AAL+ ISPKLPLGYPARLP+ VLEVSKKML ESSRN +AATVEKE
Sbjct: 481  LRVELDSLHGQAAVLAALVSISPKLPLGYPARLPRSVLEVSKKMLLESSRNPVAATVEKE 540

Query: 541  AGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDA 600
            AGWLLLSSLLASMPKEELED+VFDILSLWA+LFSGN EH I + GDL+S ICV S AVDA
Sbjct: 541  AGWLLLSSLLASMPKEELEDEVFDILSLWASLFSGNPEHQIMRTGDLSSSICVWSAAVDA 600

Query: 601  LTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPNIKPAMDIFIIRTLIAY 660
            LTAFV+CF+  +  N+GILLQPV++YLSRALSYIS +AAKELPN+KP +DIFIIRTLIAY
Sbjct: 601  LTAFVKCFVPSNTLNNGILLQPVLLYLSRALSYISFLAAKELPNVKPELDIFIIRTLIAY 660

Query: 661  QSLPDPVSYKSDHPQLIKLCTTPYRDASACEESSCLRLLLDKRDAWLGPWIPGRDWFEDE 720
            QSLPDP++Y S+H Q+++LCTTP+RDAS C ESSCLRLLLD RDAWLGPW PGRDWFEDE
Sbjct: 661  QSLPDPMAYTSEHAQILQLCTTPFRDASGCAESSCLRLLLDNRDAWLGPWTPGRDWFEDE 720

Query: 721  LCAFQGGKDGLMPCVWENEVSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGII 780
            L AFQGGKDGL+PCVWE+EVSSFPQP+TI+  LVNQMLLCFGIMFASQ + GM+SLLG++
Sbjct: 721  LRAFQGGKDGLVPCVWESEVSSFPQPDTIRNLLVNQMLLCFGIMFASQDNGGMMSLLGML 780

Query: 781  EQCLKAGKKQSWHAASVTNICVGLLAGLKALLNLRPQTLGSEVLNSIQAIFLSILAEGDI 840
            EQCLK GKKQ WHAASVTNICVGLLAGLKALL LR   LG E+LNS QAIF +ILAEGDI
Sbjct: 781  EQCLKTGKKQLWHAASVTNICVGLLAGLKALLALRSHGLGLEILNSAQAIFQNILAEGDI 840

Query: 841  CASQRRA----------------------LLLGDLTVVTDANYAGSIALAIGCIHRSAGG 878
            CASQRRA                       LLGDLT  TD+NYAGSIA+A+GCIHRSAGG
Sbjct: 841  CASQRRASSEGLGLLARLGNDMFTARMTRSLLGDLTGATDSNYAGSIAVALGCIHRSAGG 900

Query: 879  MALSSLVPAT----------------MWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILL 922
            MALS+LVPAT                +WSLHGLLLTIEAAG S+VSHVQATLGLAM+ILL
Sbjct: 901  MALSTLVPATVSSISSLAKSAISSLKIWSLHGLLLTIEAAGLSYVSHVQATLGLAMDILL 960

Query: 923  SEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCK-----VSAWQCSSPKW-SVRF 976
            SEEN W+DLQQGVGRLINAIVAVLGPELAPGSIFFSRCK     +S+WQ +S    SVRF
Sbjct: 961  SEENVWIDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKSVIAEISSWQETSTLLESVRF 1020

Query: 977  TQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIEERIEGNL 1036
            TQQLVLFAPQAVSVHSHVQTLL TLSSRQP LRH AVST+RHLIEKDP SVI+E+IE NL
Sbjct: 1021 TQQLVLFAPQAVSVHSHVQTLLPTLSSRQPTLRHRAVSTIRHLIEKDPVSVIDEQIEDNL 1080

Query: 1037 FHMLDEETDSE 1047
            FHMLDEETDSE
Sbjct: 1081 FHMLDEETDSE 1091

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|296087293\|emb\|CBI33667.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449482284\|ref\|XP_004156237.1\| PREDICTED: HEAT repeat-containing protein 5B-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449447703\|ref\|XP_004141607.1\| PREDICTED: HEAT repeat-containing protein 5B-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356567286\|ref\|XP_003551852.1\| PREDICTED: HEAT repeat-containing protein 5B-like [Glycine max]	Back alignment and taxonomy information

>gi\|334183701\|ref\|NP_001185337.1\| HEAT repeat-containing protein [Arabidopsis thaliana] gi\|332196481\|gb\|AEE34602.1\| HEAT repeat-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|334183699\|ref\|NP_001185336.1\| HEAT repeat-containing protein [Arabidopsis thaliana] gi\|332196480\|gb\|AEE34601.1\| HEAT repeat-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|240254326\|ref\|NP_176885.7\| HEAT repeat-containing protein [Arabidopsis thaliana] gi\|332196479\|gb\|AEE34600.1\| HEAT repeat-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|255551368\|ref\|XP_002516730.1\| conserved hypothetical protein [Ricinus communis] gi\|223544103\|gb\|EEF45628.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|218198270\|gb\|EEC80697.1\| hypothetical protein OsI_23125 [Oryza sativa Indica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1075
MGI\|MGI:2444098		2070	Heatr5b "HEAT repeat containin	0.312	0.162	0.233	2.7e-35
MGI\|MGI:2444133		2038	Heatr5a "HEAT repeat containin	0.155	0.081	0.316	3.4e-34
FB\|FBgn0037541		2165	CG2747 [Drosophila melanogaste	0.157	0.078	0.324	4e-32
ASPGD\|ASPL0000006743		2070	AN6598 [Emericella nidulans (t	0.214	0.111	0.267	8.1e-20
WB\|WBGene00015743		2076	C13F10.4 [Caenorhabditis elega	0.137	0.071	0.3	3e-19
UNIPROTKB\|G4N3J9		2099	MGG_04982 "HEAT repeat protein	0.143	0.073	0.262	0.00014

MGI\|MGI:2444098 Heatr5b "HEAT repeat containing 5B" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

 Score = 188 (71.2 bits), Expect = 2.7e-35, Sum P(5) = 2.7e-35
 Identities = 83/356 (23%), Positives = 143/356 (40%)

Query:    36 PLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISK 95
             P+  F+ L  L   +    K  +   Q+K  + L  L+      P R L +  +  + S 
Sbjct:    23 PVFIFEWLRFLDKVLVAANKTDVKEKQKKLVEQLTGLISSSPGPPTRKLLAKNLAALYSI 82

Query:    96 GDNISVYSRVSSLQGFL---SDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIA 152
             GD  +V+  +      +    D     P K+A  A C+G  Y + GR + S   ET    
Sbjct:    83 GDTYTVFQTLDKCNDIIRSKDDTAAYLPTKLAAVA-CVGAFYEKMGRMLGSAFPETVNNL 141

Query:   153 AKLMKFNEEFVRXXXXXXXXXXXXXXXXXXXXXXYSEAFRLIMRFAIVDKSFVVRIAGAR 212
              K +K  E   R                      + + ++   R  + D+S  VR A A+
Sbjct:   142 LKSLKSAESQGRSEILMSLQKVLTGLGGAAASS-HRDIYKNA-RSLLTDRSMAVRCAVAK 199

Query:   213 CLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSLLALGMNP-QAQVQ 271
             CL    +     +   EL+N AT C KA+E+    VR A ++ LG+++A  + P QA V 
Sbjct:   200 CLLELQN-EAVFMWTAELENVATLCFKALENSNYGVRVAVSKLLGTVMATALMPKQATVM 258

Query:   272 XXXXXXXXXXXXLE----GGLQRHLAL-----PFTRANGAKSKNMRVNLTLSWVYFLQAI 322
                         LE    G L+             +  G+ ++ +RV +T ++V F+  +
Sbjct:   259 RQNVKRATFDEVLELMATGFLRGGSGFLKSGGEMLKVGGSVNREVRVGVTQAYVVFVTTL 318

Query:   323 RLKYFHPD-SELQDYALQVMDMLRA-DIFVDS-HALACVLYILRIGVTDQMTEPTQ 375
               ++     +    + L ++   RA    VD+ ++  CV ++LR  V   + E  Q
Sbjct:   319 GGQWLERSFATFLSHVLDLVSHPRATQTHVDAVYSRRCVSFMLRATVGSLLGEKAQ 374

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI\|MGI:2444133 Heatr5a "HEAT repeat containing 5A" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

FB\|FBgn0037541 CG2747 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000006743 AN6598 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

WB\|WBGene00015743 C13F10.4 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|G4N3J9 MGG_04982 "HEAT repeat protein" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00038198001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (2273 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1075
KOG1822		2067	consensus Uncharacterized conserved protein [Funct	100.0
KOG1822		2067	consensus Uncharacterized conserved protein [Funct	99.58
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.15
KOG1824		1233	consensus TATA-binding protein-interacting protein	98.13
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.98
KOG1824		1233	consensus TATA-binding protein-interacting protein	97.86
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.7
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	97.69
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.54
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	97.53
PRK09687		280	putative lyase; Provisional	97.38
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	97.33
PRK09687		280	putative lyase; Provisional	97.3
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.22
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	97.05
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.88
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	96.78
KOG0212		675	consensus Uncharacterized conserved protein [Funct	96.73
PF05004		309	IFRD: Interferon-related developmental regulator (	96.66
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.55
TIGR02270		410	conserved hypothetical protein. Members are found	96.55
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.53
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	96.5
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	96.32
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	96.31
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.29
PTZ00429		746	beta-adaptin; Provisional	96.28
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.02
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	95.97
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.94
PF05004		309	IFRD: Interferon-related developmental regulator (	95.84
PF13251		182	DUF4042: Domain of unknown function (DUF4042)	95.83
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	95.55
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	95.45
PTZ00429		746	beta-adaptin; Provisional	95.18
KOG1242		569	consensus Protein containing adaptin N-terminal re	95.12
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	94.91
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	94.62
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	94.45
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	94.41
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.17
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	93.96
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	93.92
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	93.55
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	93.4
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	93.32
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	93.02
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	92.87
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	92.79
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	92.69
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	92.18
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	92.14
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	92.09
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	91.87
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	91.83
PF12074		339	DUF3554: Domain of unknown function (DUF3554); Int	91.65
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	91.55
KOG2259		823	consensus Uncharacterized conserved protein [Funct	90.93
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	90.69
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	90.38
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	89.85
TIGR02270		410	conserved hypothetical protein. Members are found	89.21
KOG1949		1005	consensus Uncharacterized conserved protein [Funct	89.11
COG1413		335	FOG: HEAT repeat [Energy production and conversion	88.71
KOG4653		982	consensus Uncharacterized conserved protein [Funct	88.15
KOG0212		675	consensus Uncharacterized conserved protein [Funct	87.68
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	87.66
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	86.48
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	86.18
KOG0567		289	consensus HEAT repeat-containing protein [General	85.65
KOG1949		1005	consensus Uncharacterized conserved protein [Funct	85.57
KOG2259		823	consensus Uncharacterized conserved protein [Funct	85.16
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	85.04
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	84.52
KOG1242		569	consensus Protein containing adaptin N-terminal re	84.45
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	84.33
KOG2025		892	consensus Chromosome condensation complex Condensi	84.3
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	84.29
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	83.44
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	83.0
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	82.2
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	82.19
PF11865		160	DUF3385: Domain of unknown function (DUF3385); Int	81.48
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	80.02

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=6.4e-154  Score=1416.08  Aligned_cols=1035  Identities=31%  Similarity=0.446  Sum_probs=897.7

Q ss_pred             CcccchhHHHHHHHHhhhccCCCCchhHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHhhcCCChhHhHHHHHHHHH
Q 001448           12 LSRFGVLVAQLESIVASASQQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGR   91 (1075)
Q Consensus        12 ~~~~~~~~a~le~~~~~~~~~~~~~~~~~~wL~~L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cl~~   91 (1075)
                      +++++++++++|++++...|+  ||+|+|||++++++.++..+|+|++..|++++++|.+.+..++|||+|+|++.|+++
T Consensus         1 Ms~~~~l~~~e~s~~~~~~~k--~p~~~~e~l~~l~~~l~~~~ke~~l~tQ~~~~~~l~s~~~~~~~~p~rkL~s~~i~r   78 (2067)
T KOG1822|consen    1 MSLASLLLLNETSLVASPEQK--RPVFCLEWLRYLERNLNEEQKEDLLVTQLKLEQQLISRLTNGAGPPTRKLISVAIAR   78 (2067)
T ss_pred             CCcchhhHhhHHHhhcchhhc--ccHHHHHHHHHHHhcCCcchhHHHHHHhHHHHHHHHHHHccCCCchhHHHHHHHHHH
Confidence            368999999999999999888  999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCchhhHHhHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHHhhHhhcCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 001448           92 IISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKFNEEFVRQEALLLL  171 (1075)
Q Consensus        92 ly~~GD~~~lf~~vn~l~~~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~l~s~~~e~~~~llK~lK~~~~~~R~~~l~~L  171 (1075)
                      +|+.||++++|.++|.|+|.+++++.+++..+.+|..|+|++|+.+|+++++..+++++++.|+.|+|++..|.++|.++
T Consensus        79 l~~~gd~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~~~~edt~~if~~~~k~n~s~~~~~i~~~l  158 (2067)
T KOG1822|consen   79 LISNGDSFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIGRGLEDTVQIFTKLVKTNESFVRQEIMITL  158 (2067)
T ss_pred             HHhccchhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhcchHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999999996665666677899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCC-chhHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhcCCCcccchhhhHhhHHhhhccCCChhHHH
Q 001448          172 QNALEGSGGSA-AASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRD  250 (1075)
Q Consensus       172 ~kil~g~g~~~-~~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dlE~l~sl~~K~le~s~~~vR~  250 (1075)
                      .+.++|+|+.. +...|++||| +.|+++.||++.||.+|++|+.++.+.+++.+.++|+|+..++|||++|++++++|+
T Consensus       159 ~~~~~~~g~~s~~~~~~k~i~l-~~k~~lld~s~~v~iaa~rc~~a~s~~~~~~~~~Sele~~~s~cfk~~~~s~~~~r~  237 (2067)
T KOG1822|consen  159 HNALKGMGGTSAATATHKAIRL-IAKNSLLDRSFNVKIAAARCLKAFSNLGGPGLGTSELETLASYCFKGIEISNSEVRC  237 (2067)
T ss_pred             HHHHHHhccchHHHHHHHHHHH-HHhhhhhhhhHHHHHHhHHHHHHHHhhcCccccchhhhhhcceeeeeeccchHHHHH
Confidence            99999999655 6788999999 699999999999999999999999998766667999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCCcCCCCCCCCCCC--CCChhHHHHHHhhhhhc--------ccCC-------CCcchhHHHHHH
Q 001448          251 AFAEALGSLLALGMNPQAQVQPKGKGPFPP--AKKLEGGLQRHLALPFT--------RANG-------AKSKNMRVNLTL  313 (1075)
Q Consensus       251 a~A~~La~lLa~~~~~~~~~~~~~k~~~~~--~k~l~~~l~~~Ls~~f~--------k~~~-------~~~r~~R~Gv~~  313 (1075)
                      ++|+++|++++..+.+....++++++|..+  .+..++.+. ....+|.        ++.+       ++.+++|+|++.
T Consensus       238 a~a~~~~~Lla~~~~~~s~~~~~~~g~~~pa~~~~~~~~L~-~~~~~fl~~~~~~~l~~~~~i~~~s~~~~~~~r~g~s~  316 (2067)
T KOG1822|consen  238 AVAEFLGSLLALGMHPESAVQKAKKGPFVPAKDKNTREGLA-LSWSGFLRGGRIRFLKGDSEILVGSSPVMRDVRVGSSI  316 (2067)
T ss_pred             HHHHHHHHHHhccCCchhhhhhcccCCCCCccchhHHHHHH-HHHHHHHhcchhhhhccchhheecccchhhhhhcchhH
Confidence            999999999998866665556666665443  334466665 4444444        4432       357999999999


Q ss_pred             HHHHHHHHhcccccCCCcchhHHHHHHHHHhcc--CCCCCHH------HHHHHHHHHHHhhhccCChHHHHHHHHHHHhh
Q 001448          314 SWVYFLQAIRLKYFHPDSELQDYALQVMDMLRA--DIFVDSH------ALACVLYILRIGVTDQMTEPTQRSFLVFLGKQ  385 (1075)
Q Consensus       314 ayv~fl~~lg~~wle~~~~~~~~~~~i~~ll~~--~~~~~~~------~r~~v~~ILr~~v~~~L~E~~Q~~~~~~l~~~  385 (1075)
                      ||+.|++.+|..|++.  ++..+-.|++++...  .++-..+      .|+|+.|++|++||.++||++|...+..++..
T Consensus       317 ~~v~~v~~~g~~~l~~--~~~a~~~~~~dl~~~~~~~~~~~~~~~~t~~r~~~~Fl~r~~Ig~~l~~~A~~~~~~~~~~~  394 (2067)
T KOG1822|consen  317 CYVVFVQSLGLAWLEK--NLSAFRAHILDLVLLGEVPHETSEFSDATLSRYLISFLLRVTIGALLLEKAQALQCKEIVGL  394 (2067)
T ss_pred             HHHHHHHHhhhhccch--hHHHHHhHHHhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            9999999999999987  566666699999884  2332222      58999999999999999999997776666622


Q ss_pred             c----c-----c------C------CCChhHHHHHHHHHHHHHHHhCCCchh----hHHHHHHHHHHHhcCCChHHHHHH
Q 001448          386 L----Q-----A------V------DASPFMKIAALRTLSYTLKTLGEVPSE----FKEVLDSTVVAAVSHSSQLVRIEA  440 (1075)
Q Consensus       386 ~----~-----~------~------~~s~~~lv~aL~el~~Ll~~LGsa~~~----~~~~l~d~L~~lL~hps~svRi~A  440 (1075)
                      .    .     +      .      ..+.|+.+++++++.+++.++|++...    ...++.|..+..+.||..++|++|
T Consensus       395 ~~~~~~~~~~~~~~~se~~d~~~~~~~s~~~~v~~l~~l~s~~~gl~tt~~~~l~ds~l~i~~~~~~~l~~p~as~r~~a  474 (2067)
T KOG1822|consen  395 LSKYVTSLDADRESNSEKGDKLKEDLASQHLQVAALAELSSLSPGLGTTAPSLLPDSTLQILDLILTELRHPVASARLEA  474 (2067)
T ss_pred             HHHHHhHHhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            1    1     0      1      125689999999999999999998753    456799999999999999999999


Q ss_pred             HHHHHHHHHhCCcchhhHHHHHHHHHHhhhhhcccccCCcccchhhhhchHHHHHHHHHhh-cCCCCCccCCchhHHHHH
Q 001448          441 ALTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFI-SPKLPLGYPARLPKLVLE  519 (1075)
Q Consensus       441 A~cLr~~~~a~Ps~l~~ll~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~G~a~aLAALl~~-~~~~pLgvp~~~~~~V~~  519 (1075)
                      ||||||++.++|.++++++++|+++++.+.++.+        ..++.+.|||+++|||+++ +..|||||||.++++||+
T Consensus       475 aw~Lrcll~~~P~~l~p~id~~~~~~e~~~kq~~--------s~~~~~sg~S~aiaaLl~~~~~~~plgIp~~k~~~v~~  546 (2067)
T KOG1822|consen  475 AWLLRCLLNAMPSYLTPTIDRFLERLEHLFKQLR--------SSPEAVSGFSFAIAALLAGVVVSCPLGIPHAKGLKVLN  546 (2067)
T ss_pred             HHHHHHHHhcCchhhhHHHHHHhccchhHHHHhh--------ccHHHHHHHHHHHHHHHhhhhhcCCCccchhhHHHHHH
Confidence            9999999999999999999999999888876543        3478889999999999999 999999999999999999


Q ss_pred             HHHHhhhccCCchhhHHHHHHHHHHHHHHhhccCChhhHhhcHHHHHHHHHhhcCCCchhhh--hhccc---hhHHHHHH
Q 001448          520 VSKKMLTESSRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHII--KQHGD---LTSKICVL  594 (1075)
Q Consensus       520 ~A~~LLk~~~~~~~~a~~~~qagWiLi~sLmtl~g~~~Vk~hlsqLLlLWk~~l~~s~k~~~--~~~~e---~~~~L~~r  594 (1075)
                      +|++|||+++||++.+.+|+|+||+||++||+| ||+|+|+|+||||+||||+|||++|+.|  +.|||   |+..++.|
T Consensus       547 ~Aedllkt~aqnsr~s~~kt~~gWlLi~aLmtl-gpsv~k~~lprllLlWk~~f~rs~ke~ese~~rgdaFtwq~tl~~~  625 (2067)
T KOG1822|consen  547 FAEDLLKTAAQNSRLSLAKTLAGWLLISALMTL-GPSVVKLQLPRLLLLWKNAFPRSPKELESEESRGDAFTWQLTLEGR  625 (2067)
T ss_pred             HHHHHHHhhccChhHHHHHHHhhHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccCcccccccccccchHHHHHHHHhh
Confidence            999999999999999999999999999999996 7899999999999999999999998775  44676   88889999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCccchhhhHHHHHHHHHHHHHH---HhhhhCCCCchhHHHHHHH--HHHHHhcCCCCCCC
Q 001448          595 STAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYIST---IAAKELPNIKPAMDIFIIR--TLIAYQSLPDPVSY  669 (1075)
Q Consensus       595 ~~AL~aL~sFL~~~~~~~lt~~~~Ll~~~~~~L~~aL~~l~~---i~~~~~~~lk~~~~l~r~R--iLq~y~~L~~~~~~  669 (1075)
                      ++||+.|.+|..++  +++.+++.. .+...-+++++.+++.   ..+.|+..+|....++|.|  +++.- +|.|+..|
T Consensus       626 agaL~~m~~~~s~~--~~~~~e~~~-~k~~~p~~~~l~lls~v~~~lk~yg~~~~~sa~lvrIr~~l~e~l-~llp~~~~  701 (2067)
T KOG1822|consen  626 AGALSYMKSFVSHK--PDSLTESIT-LKFLTPIECALSLLSQVPSVLKAYGNQLKRSALLVRIRAGLYELL-LLLPPSSY  701 (2067)
T ss_pred             hhHHHHHHHHhccC--cchhhHHHH-HhcCCcHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH-HhCCchhh
Confidence            99999999999973  444344421 1122223777777655   4578999999888888765  54433 34567899


Q ss_pred             CCChHHHHHHHHhhcC--CC-CcccchhhhhhhhccccC-cCCCCCCCCCh--HHHHHhh-hcCCCCCCC---Cc-ccc-
Q 001448          670 KSDHPQLIKLCTTPYR--DA-SACEESSCLRLLLDKRDA-WLGPWIPGRDW--FEDELCA-FQGGKDGLM---PC-VWE-  737 (1075)
Q Consensus       670 ~~~~~~LL~~~v~~Fs--dp-~~~~~ssll~sl~~~~d~-~lg~w~~~~d~--ie~~L~~-~~~~~~g~l---p~-~~~-  737 (1075)
                      +.++.++++.++++|+  |+ ...+++++++++|+.+|+ +.|+|.+++|+  +|+++.. ......|.+   |+ .+. 
T Consensus       702 e~~l~~~lr~lvad~tm~dn~~~~ttt~ll~s~~~~~~~ii~g~~i~~t~~~~~e~q~~~~~~~i~~g~le~d~s~ll~~  781 (2067)
T KOG1822|consen  702 EGSLTALLRKLVADLTMSDNLSANTTTELLRSLAFGDDSIITGPWIQATDHRSAEDQLLTPGSDIFSGALEEDLSSLLSL  781 (2067)
T ss_pred             HHHHHHHHHHHHHhhcccccchhHHHHHHhhhhhccCcccccChhhhhccchhHHHhhccCccccceeeeecCchhhhHH
Confidence            9999999999999998  55 456678999999999998 69999999997  8999533 333334433   22 221 


Q ss_pred             --cc-cCCCCCCCchhHHHHHHHHHHHHHHhccCCchhHhHHHHHHHHHHHcccchhHHHHHHHHHHH--HHHHHHHHHh
Q 001448          738 --NE-VSSFPQPETIKKTLVNQMLLCFGIMFASQHSSGMLSLLGIIEQCLKAGKKQSWHAASVTNICV--GLLAGLKALL  812 (1075)
Q Consensus       738 --~~-~~~~p~p~p~~tsvVdaai~LFg~vFp~~~~k~q~s~LE~l~~~i~~~k~~~R~~Ai~vNv~~--All~aLk~~~  812 (1075)
                        .. ...+|+|+|+++++||+|++|||.+|||+++|||+||+|||.+||++.|+. |+++|++|+++  |++++||.++
T Consensus       782 ~s~~g~~~~p~~lp~~ls~Idta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~-r~qsV~~~a~t~~al~s~lk~l~  860 (2067)
T KOG1822|consen  782 ISAAGLSSVPYALPLALSLIDTAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSA-RQQSVQVNAVTWQALLSALKYLA  860 (2067)
T ss_pred             HHhhcccCCCCCCcchhHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccc-hhHHHHHHHHHHHHHHHHHHHHH
Confidence              12 336899999999999999999999999999999999999999999999988 89999999999  9999999999


Q ss_pred             hhCC--CCCChHHHHHHHHHHHHHHhcCCccHHHHHHH-----------------------HhccccccCCchhhHHHHH
Q 001448          813 NLRP--QTLGSEVLNSIQAIFLSILAEGDICASQRRAL-----------------------LLGDLTVVTDANYAGSIAL  867 (1075)
Q Consensus       813 ~~~~--~~~~~~v~~~~~~ll~~~l~~~d~~~~~r~aa-----------------------lv~~iv~~~dp~~Rag~aL  867 (1075)
                      +.++  ..++++|.+...+++.+-+..++|  ..||++                       +++++...+||..|+|+.+
T Consensus       861 e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p--~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghsl  938 (2067)
T KOG1822|consen  861 EFKGATSLGPEEVRSSALTLIVNSLINPNP--KLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSL  938 (2067)
T ss_pred             hcccccccCHHHHHHHHHHHHhhhhccCCh--HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            9888  447899999999999999999985  466665                       5566778899999999999


Q ss_pred             HHHHHHHhhCCcccccccch-----------------hHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHhccCCCCch
Q 001448          868 AIGCIHRSAGGMALSSLVPA-----------------TMWSLHGLLLTIEAAGFSFVSHVQATLGLAMEILLSEENGWVD  930 (1075)
Q Consensus       868 ALG~I~r~vGgmas~~Ll~~-----------------~~WaL~aL~li~dsaG~~f~~~v~stL~ll~~lll~~~~~~~~  930 (1075)
                      |+|||||||||+++|+.+++                 +.|+||||++++|++|++|+.||++||+++.++++++|+++++
T Consensus       939 alg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~e 1018 (2067)
T KOG1822|consen  939 ALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVE 1018 (2067)
T ss_pred             HHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhh
Confidence            99999999999999966543                 1999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHH------HHHHhhCCCCCCCcc------hhhhhhc----c--ccCCCchhHHHHHhhHHhhccCCCcchhH
Q 001448          931 LQQGVGRLIN------AIVAVLGPELAPGSI------FFSRCKV----S--AWQCSSPKWSVRFTQQLVLFAPQAVSVHS  992 (1075)
Q Consensus       931 ~~~~igr~l~------alI~~LGPeLq~~s~------~~~~~~~----~--~~~~~~~~eai~clQqL~lFAP~~v~~~~  992 (1075)
                      +||++|||++      ++|+++|||||++..      .++.|..    .  ..+..+|+++|+|+||+|||||+|+|++.
T Consensus      1019 v~q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~ 1098 (2067)
T KOG1822|consen 1019 VHQCYNRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDS 1098 (2067)
T ss_pred             hhhhhccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHH
Confidence            9999999999      999999999998873      4444443    2  33445899999999999999999999999


Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHHHHHccChhhHh----------------------hhchHHHHHHhhccCCCHHHHH
Q 001448          993 HVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVI----------------------EERIEGNLFHMLDEETDSEYVK 1050 (1075)
Q Consensus       993 lV~~L~~~L~S~~~~Lr~aav~cLrqL~qR~a~~v~----------------------~~~le~~Lf~~LD~e~d~~l~~ 1050 (1075)
                      +|+.||..|+|+|..+|+++++|||||+||++.+|.                      +.|||+.+|+|||+|+|.++++
T Consensus      1099 lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~ 1178 (2067)
T KOG1822|consen 1099 LVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLK 1178 (2067)
T ss_pred             HHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHH
Confidence            999999999999999999999999999999999865                      2499999999999999999998


Q ss_pred             --HHHH---Hhhhhhcchhhhhc
Q 001448         1051 --SYTL---CLAYFSSFYAFYLE 1068 (1075)
Q Consensus      1051 --~~~~---~~~~~~~~~~~~~~ 1068 (1075)
                        +.+|   .+.+.++.++-|+.
T Consensus      1179 ~I~~tl~~~~~~~~~~~ls~Wl~ 1201 (2067)
T KOG1822|consen 1179 NILETLSRMLNSLADELLSSWLM 1201 (2067)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHH
Confidence              3333   56999999999985

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>PF13251 DUF4042: Domain of unknown function (DUF4042)	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1075
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	7e-07
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	6e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	2e-05
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	3e-05
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	1e-04
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	2e-04
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	5e-05
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-04

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242	Back alignment and structure

 Score = 50.8 bits (121), Expect = 7e-07
 Identities = 44/222 (19%), Positives = 79/222 (35%), Gaps = 32/222 (14%)

Query: 41  DLLSDLISAIDEEPKESILLWQRKCE--DALYSLLILGARRPVRHLASVAMGRIISKGDN 98
           D+LS +     ++ +E    W  + E  + L  LL    +       ++           
Sbjct: 11  DILSKMPKDFYDKLEEK--KWTLRKESLEVLEKLLTDHPKLENGEYGAL----------- 57

Query: 99  ISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETTIIAAKLMKF 158
                 VS+L+  ++  K S    VA A +CL  L +   +R ++          +  K 
Sbjct: 58  ------VSALKKVIT--KDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKE 109

Query: 159 NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDKSFVVRIAGARCL-KAF 217
            +  V       +      +   A   +  E+          +K+  V+   A  + +A 
Sbjct: 110 KKPNVVTALREAIDAIYASTSLEAQQESIVESLS--------NKNPSVKSETALFIARAL 161

Query: 218 AHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAEALGSL 259
                  L    L    T  VK + +P  +VRD+ AEALG+L
Sbjct: 162 TRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTL 203

PyMOL of 2qk2

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 134/1032 (12%), Positives = 292/1032 (28%), Gaps = 99/1032 (9%)

Query: 81   VRHLASVAMGRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAA-QCLGELYRQFGR 139
             R +A+  +   + K            +   +    + +  +V   A +CLG L  +   
Sbjct: 22   FRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE 81

Query: 140  RITSGLLETTIIAAKLMKFNEEFVRQEALLLLQNALEGSGGSAAASAYSE--AFRLIMRF 197
                 +++T       M  ++E +R  + + L+  +     +++ SA +     ++  R 
Sbjct: 82   YQVETIVDTLC---TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRL 138

Query: 198  AIV---DKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAIEDPIASVRDAFAE 254
                   +   V++     +       G  L V    +  T  +  +  P  +VR     
Sbjct: 139  TSAIAKQEDVSVQLEALDIMADMLSRQGGLL-VNFHPSILTCLLPQLTSPRLAVRKRTII 197

Query: 255  ALGSLLALGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRAN----GAKSKNMRVN 310
            ALG L+    N                + L   L ++ ++  TR       A S+     
Sbjct: 198  ALGHLVMSCGNIVFV---------DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR 248

Query: 311  LTLSWVYFLQAIRLKYFHPDSELQDYALQVMDMLRADI------FVDSHALACVLYI--- 361
            +       +  +       D EL++Y +Q  +             V +    C+ Y+   
Sbjct: 249  IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYD 308

Query: 362  --LRIGVTDQMTEPTQRSFLVFLGKQLQAV-----DASPFMKIAALRTLSYTLKTLGEVP 414
                    D+              +          D S  ++ AA + L   + T  E+ 
Sbjct: 309  PNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML 368

Query: 415  SEFKEVLDSTVVAAVSHSSQLVRIEAALTLRALAEV-----DPTCVSGLITYGVTTLNAL 469
             EF + +   +++      + V+ +      +L +         C    +  G T L  L
Sbjct: 369  PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTML 428

Query: 470  RENV-SFEKGSSLMVELDSLHGQATVVAALIFISPKLPLGYPARLPKLVLEVSKKMLTES 528
            +  V +  K     ++  S+  +      L  +   LP      +P LV  +   +  +S
Sbjct: 429  QSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKS 488

Query: 529  SRNTLAATVEKEAGWLLLSSLLASMPKEELEDQVFDILSLWATLFSGNAEHIIKQHGDLT 588
            S + L     K      L  +L +   +     V  ++             I       +
Sbjct: 489  SSSNL-----KIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKIT------S 537

Query: 589  SKICVLSTAVDALTAFVRCFLSPDAANSGILLQPVMVYLSRALSYISTIAAKELPNIKPA 648
              + V    V  +         P + ++   ++ +     + L         +   I   
Sbjct: 538  EALLVTQQLVKVIRP----LDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCM 593

Query: 649  MDIFIIRTLIAYQSLPDPVSYKSDHPQLIKLCTTPYRDASACEESSC---LRLLLDKRDA 705
              I           LP+ +    +  +      T  +  +    S     LR +L +   
Sbjct: 594  GQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVP 653

Query: 706  WLGPWIPGRDWFEDELCA------FQGGKDGLMPCVWENEVSSFPQPETIKKTLVNQM-L 758
             L  ++                   +   D L   + +  +   P   +     V+QM +
Sbjct: 654  ILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAI 713

Query: 759  LCFGIMFASQHSSGMLSLLGIIEQCLKAGK------------KQSWHAASVTNICVGLLA 806
                 +     SS       I+ + +   +               + A  VT        
Sbjct: 714  SFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYM 773

Query: 807  GLKALL-----NLRPQTLGSEVLNSIQAIFLSILAEGDICASQRRALLLGDLTVVTDANY 861
             L  +L     +        +   SI     ++               + D+      + 
Sbjct: 774  DLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDS 833

Query: 862  AGSIAL-AIGCIHRSAGGMALSSLVPATMWSLHG-----LLLTIEAAGFSFVSHVQATLG 915
               +AL ++G +           L    + +              A G   V ++   L 
Sbjct: 834  IRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLP 893

Query: 916  LAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCSSPKWSVR 975
              ++ + S+      L   +  +I++   V                +    C   +   R
Sbjct: 894  FVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIW-----ALLLKHCECAEEGTR 948

Query: 976  FTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVIEERIEGN 1035
                  L     +   + +  L   L S     R   V+ ++  I   P   I+  ++  
Sbjct: 949  NVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQ-PIDPLLKNC 1007

Query: 1036 LFHMLDEETDSE 1047
            +   L    D +
Sbjct: 1008 IGDFLKTLEDPD 1019

PyMOL of 1u6g

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1075
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-08
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.001
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 1e-08
 Identities = 114/1039 (10%), Positives = 276/1039 (26%), Gaps = 58/1039 (5%)

Query: 32   QSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLIL--GARRPVRHLASVAM 89
             S D    F   +DL++ +    K+SI L        +  +L L       V++LA   +
Sbjct: 13   TSSDKDFRFMATNDLMTELQ---KDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCL 69

Query: 90   GRIISKGDNISVYSRVSSLQGFLSDGKKSEPQKVAGAAQCLGELYRQFGRRITSGLLETT 149
            G ++SK     V + V +L   +   K+        ++  L  +  +     +   L   
Sbjct: 70   GPLVSKVKEYQVETIVDTLCTNMLSDKEQLRD---ISSIGLKTVIGELPPASSGSALAAN 126

Query: 150  IIAAKLMKF-------NEEFVRQEALLLLQNALEGSGGSAAASAYSEAFRLIMRFAIVDK 202
            +      +         +  V+ EAL ++ + L   G       +  +    +   +   
Sbjct: 127  VCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG--GLLVNFHPSILTCLLPQLTSP 184

Query: 203  SFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAI-EDPIASVRDAFAEALGSLLA 261
               VR      L           G     +   H +  + ++   S    + + + ++  
Sbjct: 185  RLAVRKRTIIALGHLV----MSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR 240

Query: 262  LGMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQA 321
               +   ++    +   P   K        L     +A  +  +     +       +  
Sbjct: 241  QAGH---RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINI 297

Query: 322  IRLKYFHPDSELQDYALQVMDMLRADIFVDSHALACVLYILRIGVTDQMTEPTQRSFLVF 381
                  +  +   D   +  + + AD   D    +   Y       D M+   +R+    
Sbjct: 298  CLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYS----DDDDMSWKVRRAAAKC 353

Query: 382  LGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSEFKEVLDSTVVAAVSHSSQLVRIEAA 441
            L   +             +      +    E     K  +    ++ +  +  +      
Sbjct: 354  LDAVVSTRHEMLPEFYKTV--SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCD 411

Query: 442  LTLRALAEVDPTCVSGLITYGVTTLNALRENVSFEKGSSLMVELDSLHGQATVVAALIFI 501
                   E   T +   +   V  L+   +  S +        L  L     V      +
Sbjct: 412  PDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTEL-----VNVLPGAL 466

Query: 502  SPKLPLGYPARLPKLVLEVSKKMLTESSRNTLAATVEKEAGWLLLSSL---------LAS 552
            +  +P+  P  +  L  + S   L   + + L   +   +  +    +            
Sbjct: 467  TQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVG 526

Query: 553  MPKEELEDQVFDILSLWATLFSGNAEHIIKQHGDLTSKICVLSTAVDALTAFVRCFLSPD 612
             P  ++  +   +      +     +            +   +          +      
Sbjct: 527  DPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERA 586

Query: 613  AANSGILLQPVMVYLSRALSYISTIAAKELPNIKPAMDIFIIRTLIAYQSLPDPVSYKSD 672
             +  G ++  +   L   L     I  + L N    +      TLIA   L   +     
Sbjct: 587  ISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLG 646

Query: 673  HPQLIKLCTTPYRDASACEES-SCLRLLLDKRDAWLGPWIPGRDWFEDELCAFQGGKDGL 731
                I          +    + S L +L+      L   +      E      +      
Sbjct: 647  EGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVS 706

Query: 732  MPCVWENEVSSFPQPETIKKTLVNQMLLCFGIMFAS-QHSSGMLSLLGIIEQCLKAGKKQ 790
               +      +   P ++ K   + +    G++ +       + ++L   +  +  G   
Sbjct: 707  QMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNN 766

Query: 791  SWHAASVTNICVGLLAGLKALLNLRPQTLGSEVLNSI-QAIFLSILAEGDICASQRRALL 849
              +   +  +          + +        +   SI + +     A      +     +
Sbjct: 767  LGYMDLLRMLT-------GPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFI 819

Query: 850  LGDLTVVTDANYAGSIALAIGCIHRSAGGMALSSLVPATMWSLHGLLLTI-EAAGFSFVS 908
                   +  +      L++G +           L    + +       +  AA ++  S
Sbjct: 820  QDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGS 879

Query: 909  HVQATLGLAMEILLSEENGWVDLQQGVGRLINAIVAVLGPELAPGSIFFSRCKVSAWQCS 968
                 L   +  +L E       Q  +   +  I++          +      +    C 
Sbjct: 880  ISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLK-HCE 938

Query: 969  SPKWSVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQPILRHLAVSTLRHLIEKDPDSVI 1028
              +   R      L     +   + +  L   L S     R   V+ ++  I   P   I
Sbjct: 939  CAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQP-I 997

Query: 1029 EERIEGNLFHMLDEETDSE 1047
            +  ++  +   L    D +
Sbjct: 998  DPLLKNCIGDFLKTLEDPD 1016

PyMOL of d1u6gc_

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1075
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.92
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.87
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.68
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.66
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.66
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.22
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.16
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.05
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	98.99
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.9
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.59
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.51
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	98.22
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.05
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.92
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.88
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	97.81
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	97.78
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.3
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	97.25
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	96.9
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	96.45
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.41
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	96.36
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	95.79
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	95.66
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	95.11
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	92.88
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	92.73
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	91.74
d1ho8a_		477	Regulatory subunit H of the V-type ATPase {Baker's	82.26

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.8e-16  Score=118.36  Aligned_cols=401  Identities=14%  Similarity=0.085  Sum_probs=247.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             37999116979999999872029946589998999999999851199902768999999997302774036886999897
Q 001448           31 QQSPDPLLCFDLLSDLISAIDEEPKESILLWQRKCEDALYSLLILGARRPVRHLASVAMGRIISKGDNISVYSRVSSLQG  110 (1075)
Q Consensus        31 ~~~~~~~~~~~~L~~L~~~l~~~~k~di~~~Q~~l~~~L~~ll~~~~g~P~R~l~a~cla~ly~~GD~~~Lf~~vn~l~~  110 (1075)
                      =++||+-+=|--+.+|.+.+....-.-=...++++.+.|++.+. -+-+.+|+.+.+||+.+..+.....+-..++.+..
T Consensus        12 ~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~-D~~~~Vq~~A~k~l~~l~~~~~~~~~~~l~~~L~~   90 (1207)
T d1u6gc_          12 MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCT   90 (1207)
T ss_dssp             TTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             67988729999999999987230144576889999999999967-99879999999999999976768669999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHH----HCC-CCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             54169998835697899999999999865763--0779999999997----310-7288999999999999931899981
Q 001448          111 FLSDGKKSEPQKVAGAAQCLGELYRQFGRRIT--SGLLETTIIAAKL----MKF-NEEFVRQEALLLLQNALEGSGGSAA  183 (1075)
Q Consensus       111 ~l~~~k~~s~~~~~aA~~cLG~l~~~~G~~~~--s~~~e~~~~llK~----lK~-~~a~~R~~~l~~L~kil~g~g~~~~  183 (1075)
                      .+.   +++...+..+..||..+.+.+++...  ......+..+...    +.+ .+..+|.+++..+..++...|....
T Consensus        91 ~l~---~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~  167 (1207)
T d1u6gc_          91 NML---SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLV  167 (1207)
T ss_dssp             HTT---CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCT
T ss_pred             HHC---CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             856---89632659999999999996632002311278899999999987634777789999999999999987567668


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHH
Q ss_conf             5479999999988741586358999999999999863199865542566765776533-578743899999999999982
Q 001448          184 ASAYSEAFRLIMRFAIVDKSFVVRIAGARCLKAFAHIGGPCLGVGELDNSATHCVKAI-EDPIASVRDAFAEALGSLLAL  262 (1075)
Q Consensus       184 ~~~~~di~K~~~r~~~~Dks~~Vr~aAa~cL~~l~~~~~~~~~~~dle~l~sl~~K~l-e~s~~~vR~a~A~~La~lLa~  262 (1075)
                       ..+.++.+. ....++|....||..|+.|+..+....    ....++.+...+++.+ .+.+..+|+.+..+++.+...
T Consensus       168 -~~~~~il~~-l~~~l~~~~~~vR~~A~~~l~~l~~~~----~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~  241 (1207)
T d1u6gc_         168 -NFHPSILTC-LLPQLTSPRLAVRKRTIIALGHLVMSC----GNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQ  241 (1207)
T ss_dssp             -TTHHHHHHH-HGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHH
T ss_pred             -HHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             -779999999-998808999899999999999999877----99879999999999870599889999999999999987


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf             14887767889999999988806799988322100457888601478999999999998010146898416689999999
Q 001448          263 GMNPQAQVQPKGKGPFPPAKKLEGGLQRHLALPFTRANGAKSKNMRVNLTLSWVYFLQAIRLKYFHPDSELQDYALQVMD  342 (1075)
Q Consensus       263 ~~~~~~~~~~~~k~~~~~~k~l~~~l~~~Ls~~F~k~~~~~~r~~R~Gi~~ayv~fl~~lg~~~le~~~~~~~~~~~i~~  342 (1075)
                      .  +..           -.+.+++.+. .+. .+++..   ..++|-+..+++..|+...+..       ...|...++.
T Consensus       242 ~--~~~-----------~~~~l~~i~~-~l~-~~l~~~---~~~~r~~al~~l~~l~~~~~~~-------~~~~~~~ii~  296 (1207)
T d1u6gc_         242 A--GHR-----------IGEYLEKIIP-LVV-KFCNVD---DDELREYCIQAFESFVRRCPKE-------VYPHVSTIIN  296 (1207)
T ss_dssp             S--SGG-----------GTTSCTTHHH-HHH-HHHSSC---CTTTHHHHHHHHHHHHHCTTCC-------CHHHHHHHHH
T ss_pred             C--CHH-----------HHHHHHHHHH-HHH-HHHCCC---CHHHHHHHHHHHHHHHHHCHHH-------HHHHHHHHHH
T ss_conf             6--154-----------6777999999-999-882586---1777899999999999867465-------4455999999


Q ss_pred             HHCCCCCCC--------------------------------------HHHHHHHHHHHHHHHHCCCCHHHH---HHHHHH
Q ss_conf             760298888--------------------------------------779999999999752115990999---999999
Q 001448          343 MLRADIFVD--------------------------------------SHALACVLYILRIGVTDQMTEPTQ---RSFLVF  381 (1075)
Q Consensus       343 ll~~~~~~~--------------------------------------~~~r~~v~~ILr~~i~~~L~E~~Q---~~~~~~  381 (1075)
                      .+......|                                      ...|++...+|...+.. .+|.-.   .++...
T Consensus       297 ~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~-~~~~l~~~~~~~~~~  375 (1207)
T d1u6gc_         297 ICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVST-RHEMLPEFYKTVSPA  375 (1207)
T ss_dssp             HHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTT-CCTTHHHHHTTTHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf             9999874073000346788776555401101356678887522013389999999999868988-899999999999999


Q ss_pred             HHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHH-------------------HHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             98620258998358999999999999994999644-------------------69989999999821787689999999
Q 001448          382 LGKQLQAVDASPFMKIAALRTLSYTLKTLGEVPSE-------------------FKEVLDSTVVAAVSHSSQLVRIEAAL  442 (1075)
Q Consensus       382 l~~~~~~~~~s~~~lv~aL~el~~Li~~LGsa~~~-------------------~~~~l~d~L~~ll~hps~svRi~AA~  442 (1075)
                      +.+.+  .|.++.+-..++..++.++...+.....                   ....+...+...+..++..+|..+..
T Consensus       376 L~~~l--~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~  453 (1207)
T d1u6gc_         376 LISRF--KEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFN  453 (1207)
T ss_dssp             HHSTT--SCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHH--CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99984--5985489999999999999730321255515488876302699999876999999999864886567888999


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             999998709830011799999999855
Q 001448          443 TLRALAEVDPTCVSGLITYGVTTLNAL  469 (1075)
Q Consensus       443 cLr~~~~a~P~~l~~ll~~~~~~L~~~  469 (1075)
                      ++..++...|....+.+...+..+...
T Consensus       454 ~l~~l~~~~~~~l~~~l~~~~~~i~~~  480 (1207)
T d1u6gc_         454 MLTELVNVLPGALTQHIPVLVPGIIFS  480 (1207)
T ss_dssp             HHHHHHHHSTTTTGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             999999972257777667567899999

PyMOL of d1u6gc_

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure