Citrus Sinensis ID: 001451

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070-----
MLHRSFKPAKCKTSLKLASSRIKLLKNKRGAQVKQLKRELAQLLESGQDQTARIRVEHVVREENTMAAYDLLEIYCELIVTRLPIVESQKNCPIDLKEAICSVIFASPRCADIPELMDVRKMFTSKYGKDFVSAAAELRPDCGVSRLLVEKLSVKAPDGPTKIKILTAIAEEHNIKWDPKSFGEKDSRPSEDLLNGPSTFSSASQMFVNPSNVQSPPNLDDKGHSIFHAPTKTNEIHGAPANVHEHNLRPPSSQTDSGANKTNFSAAFHPESMPTGSGTERMEFRHSYSGDGNASSMGGQNWNMEFKDAAAAARSAAESAERASLAARAAAELSSRGNNAWQYSADTRRDEELSRYANSTLHSEHHAKGPVNILHGRNSRMDYEQFNNHQQDDVAGVADNSHGDSLKSTNKSGQSASLKPTAASADGSAFVNNLQMADRYSRKNSSELGQKDNLSEISLKEQSSQSEVDYAGKLQGMDSKSFDDLEEAKFRNQSSHYASYSRSSTFSDDHDVSNYYNRSLGSDADENPFAVNNEGVIRTNSNKANFPVSASVVYDDYVSDEDEPKIDLQHQQKGHEYLEFSPHSGKSPTHMFSDTNAWREKQNIDESPRLPISRSHFSMEHQSDPVFTESWKSSTVPSQPDEMLPATFDDYDVPISKSEEELDKAKQDKSKDTNEGNIYSRTSEMTQGENHGFFSSFVDEENGSPSKPWLQSSSFDDPYSQSHRVGEGKHEQSQQPSRFSMGHEVRDNVLAKSVEDTETSKDSSPESGKELNFAMLTGGLRNKGYKHPPYVVNPSHNALLSKETTDHTSTKTEESLSATVNVSVDSGATSQDTYNRDMRAEADTRPSAGAYVGSHDDDARDEHARQTSTSSQEHYTKRGGIEENKRSSSRTQFKYFDSSNSDSEDDLPIEASTNKARFNSGLSRRTKASPSNSKGSFNSKATILSKPSVSPGYVEERNSPSRSLFSNQTSQRPLSRSKISDRLGSAAQPRLEEQAANKRIQESKRSSFNDRLKPSEKEQPSKSLRKIVTSGNTENLNSASSSEQTPSNKKASHVHPKLPDFDALTAHLQSLRTDR
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccc
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHcccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccEcccccccccccccccccccccccccccccccEccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccEEEEcccccccHHHHcccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccEccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHccc
mlhrsfkpakcktSLKLASSRIKLLKNKRGAQVKQLKRELAQLLESGQDQTARIRVEHVVREENTMAAYDLLEIYCELIVtrlpivesqkncpidlKEAICSVIfasprcadipelMDVRKMFTSKYGKDFVSAAAelrpdcgvsRLLVEKLsvkapdgptkIKILTAIAEehnikwdpksfgekdsrpsedllngpstfssasqmfvnpsnvqsppnlddkghsifhaptktneihgapanvhehnlrppssqtdsganktnfsaafhpesmptgsgtermefrhsysgdgnassmggqnwnmEFKDAAAAARSAAESAERASLAARAAAELSsrgnnawqysadtrrDEELSRYAnstlhsehhakgpvnilhgrnsrmdyeqfnnhqqddvagvadnshgdslkstnksgqsaslkptaasadgsaFVNNLQMadrysrknsselgqkdnlseislkeqssqsevdyagklqgmdsksfddleeakfrnqsshyasysrsstfsddhdvsnyynrslgsdadenpfavnnegvirtnsnkanfpvsasvvyddyvsdedepkidlqhqqkgheylefsphsgkspthmfsdtnawrekqnidesprlpisrshfsmehqsdpvfteswksstvpsqpdemlpatfddydvpisksEEELDKAkqdkskdtnegniysrtsemtqgenhgffssfvdeengspskpwlqsssfddpysqshrvgegkheqsqqpsrfsmghevrdnVLAKSvedtetskdsspesgkELNFAMLTgglrnkgykhppyvvnpshnallskettdhtstkteesLSATVNVsvdsgatsqdtynrdmraeadtrpsagayvgshdddardeharqtstssqehytkrggieenkrsssrtqfkyfdssnsdseddlpieastnkarfnsglsrrtkaspsnskgsfnskatilskpsvspgyveernspsrslfsnqtsqrplsrskisdrlgsaaqpRLEEQAANKRIQeskrssfndrlkpsekeqpsksLRKIVTSgntenlnsassseqtpsnkkashvhpklpdfDALTAHLQSLRTDR
mlhrsfkpakcktslklassrikllknkrgaqvKQLKRELAQllesgqdqtarirVEHVVREENTMAAYDLLEIYCELIVTRLPIVESQKNCPIDLKEAICSVIFASPRCADIPELMDVRKMFTSKYGKDFVSAAAELRPDCGVSRLLVEklsvkapdgptkIKILTAIAeehnikwdpksfgeKDSRPSEDLLNGPSTFSSASQMFVNPSNVQSPPNLDDKGHSIFHAPTKTNEIHGAPANVHEHNLRPPSSQTDSGANKTNFSAAFHPESMPTGSGTERMEFRHSYSGDGNASSMGGQNWNMEFKDAAAAARSAAESAERASLAARAAAelssrgnnawqysaDTRRDEELSRYANstlhsehhakgpvNILHGRNSRMDYEQFNNHQQDDVAGVADNSHGDSLKstnksgqsasLKPTAASADGSAFVNNLQMADRYsrknsselgqkdnlseislkeqssqsEVDYAGKLQGMDSKSFDDLEEAKFRnqsshyasysrsstfsddhDVSNYYNRSLGSDADENPFAVNNEGvirtnsnkanfpvSASVVYDDYVSDEDEPKIDLQHQQKGHEYLEFSPHSGKSPTHMFSDTNAWREKQNIDESPRLPISRSHFSMEHQSDPVFTESWKSSTVPSQPDEMLPATFDDYDVPISKSEEeldkakqdkskdtnegniysrtsemtqgeNHGFFSSFVDEENGSPSKPWLQSSSFDDPYSQSHRVGEGkheqsqqpsrfsmghevrDNVLAKSVEdtetskdsspesgkeLNFAMLTGGLRNKGYKHPPYVVNPSHNALLSKETTDHtstkteeslsatvnvsvdsgatsqdtynrdMRAEADTRPSAGAYVGSHDDDARDEHArqtstssqehytkrggieenkrsssrtqfkyfdssnsdseddlpIEAStnkarfnsglsrrtkaspsnskgsfnskatilskpsvspgyveernspsrslfsnqtsqrplsrskisdrlgsaaqprleeqaankriqeskrssfndrlkpsekeqpskslrkivtsgntenlnsassseqtpsnKKASHVHPKLPDFDALTAHLQSLRTDR
MLHRSFKPAKCKTSLKLASSRIKLLKNKRGAQVKQLKRELAQLLESGQDQTARIRVEHVVREENTMAAYDLLEIYCELIVTRLPIVESQKNCPIDLKEAICSVIFASPRCADIPELMDVRKMFTSKYGKDFVSAAAELRPDCGVSRLLVEKLSVKAPDGPTKIKILTAIAEEHNIKWDPKSFGEKDSRPSEDLLNGPSTFSSASQMFVNPSNVQSPPNLDDKGHSIFHAPTKTNEIHGAPANVHEHNLRPPSSQTDSGANKTNFSAAFHPESMPTGSGTERMEFRHSYSGDGNASSMGGQNWNMEFKDaaaaarsaaesaeraslaaraaaelssrGNNAWQYSADTRRDEELSRYANSTLHSEHHAKGPVNILHGRNSRMDYEQFNNHQQDDVAGVADNSHGDSLKSTNKSGQSASLKPTAASADGSAFVNNLQMADRYSRKNSSELGQKDNLSEISLKEQSSQSEVDYAGKLQGMDSKSFDDLEEAKFRNQsshyasysrsstfsDDHDVSNYYNRSLGSDADENPFAVNNEGVIRTNSNKANFPvsasvvyddyvsdedePKIDLQHQQKGHEYLEFSPHSGKSPTHMFSDTNAWREKQNIDESPRLPISRSHFSMEHQSDPVFTESWKSSTVPSQPDEMLPATFDDYDVPISKSEEELDKAKQDKSKDTNEGNIYSRTSEMTQGENHGFFSSFVDEENGSPSKPWLQSSSFDDPYSQSHRVGEGKHEQSQQPSRFSMGHEVRDNVLAKSVEDTETSKDSSPESGKELNFAMLTGGLRNKGYKHPPYVVNPSHNALLSKETTDHTSTKTEESLSATVNVSVDSGATSQDTYNRDMRAEADTRPSAGAYVGSHDDDARDEHARQTSTSSQEHYTKRGGIEENKRSSSRTQFKYFDSSNSDSEDDLPIEASTNKARFNSGLSRRTKASPSNSKGSFNSKATILSKPSVSPGYVEERNSPSRSLFSNQTSQRPLSRSKISDRLGSAAQPRLEEQAANKRIQESKRSSFNDRLKPSEKEQPSKSLRKIVTSGNTENLNSASSSEQTPSNKKASHVHPKLPDFDALTAHLQSLRTDR
***************************************************ARIRVEHVVREENTMAAYDLLEIYCELIVTRLPIVESQKNCPIDLKEAICSVIFASPRCADIPELMDVRKMFTSKYGKDFVSAAAELRPDCGVSRLLVEKLSVKAPDGPTKIKILTAIAEEHNIKW*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************NFPVSASVVYDDYV************************************************************************************************************************************************************************************************************************MLTGGL****Y**************************************************************************************************************************************************************************************************************************************************************************************************
***RS**PAKCKTSLKLASSRIKLL**************LAQLLESGQDQTARIRVEHVVREENTMAAYDLLEIYCELIVTRLPIVESQKNCPIDLKEAICSVIFASPRCADIPELMDVRKMFTSKYGKDFVSAAAELRPDCGVSRLLVEKLSVKAPDGPTKIKILTAIAEEHNIKWDPKSFG**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************DALTAHLQSLR***
***********KTSLKLASSRIKLLKNKRGAQVKQLKRELAQLLESGQDQTARIRVEHVVREENTMAAYDLLEIYCELIVTRLPIVESQKNCPIDLKEAICSVIFASPRCADIPELMDVRKMFTSKYGKDFVSAAAELRPDCGVSRLLVEKLSVKAPDGPTKIKILTAIAEEHNIKWDPKSFGEKDSRPSEDLLNGPSTFSSASQMFVNPSNVQSPPNLDDKGHSIFHAPTKTNEIHGAPANVHEHN***********ANKTNFSAAFHPESMPTGSGTERMEFRHSYSGDGNASSMGGQNWNMEFKD****************************GNNAWQYSADTRRDEELSRYANSTLHSEHHAKGPVNILHGRNSRMDYEQFNNHQQDDVAGV****************************DGSAFVNNLQMADRY********GQKDNLSEISLKEQSSQSEVDYAGKLQGMDSKSFDDLEEAKFR***************SDDHDVSNYYNRSLGSDADENPFAVNNEGVIRTNSNKANFPVSASVVYDDYVSDEDEPKIDLQHQQKGHEYLEFSPHSGKSPTHMFSDTNAWREKQNIDESPRLPISRSHFS*********************PDEMLPATFDDYDVPISKSE**************NEGNIYSRTSEMTQGENHGFFSSFVD*********WLQSSS*************************SMGHEVRDNVLAKS**************GKELNFAMLTGGLRNKGYKHPPYVVNPSHNALLSK****************TVNVSVDSGATSQDTYNRDMRAEADTRPSAGAYVG**************************************QFKY***********LPIEASTNKARFN******************NSKATILSK*****************************************************************************LRKIVTSGN***********************PKLPDFDALTAHLQSLRTDR
***RSFKPAKCKTSLKLASSRIKLLKNKRGAQVKQLKRELAQLLESGQDQTARIRVEHVVREENTMAAYDLLEIYCELIVTRLPIVESQKNCPIDLKEAICSVIFASPRCADIPELMDVRKMFTSKYGKDFVSAAAELRPDCGVSRLLVEKLSVKAPDGPTKIKILTAIAEEHNIKWDPKSFGEKD**********************************************************************************************************************************************************************************************************************************************************************************************************************************DHDVSNYYNRSLGSDADENPFAVNNEGVIR*******FPVSASVVYDDYVSDEDE*K************************************************************************************************************************************************************************************************************ELNFAMLTGGLRNKGYKHPPYV***************************TV******GATS*****R**************************************************************************************************************************************************************************************************************************HPKLPDFDALTAHLQSL****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLHRSFKPAKCKTSLKLASSRIKLLKNKRGAQxxxxxxxxxxxxxxxxxxxxxIRVEHVVREENTMAAYDLLEIYCELIVTRLPIVESQKNCPIDLKEAICSVIFASPRCADIPELMDVRKMFTSKYGKDFVSAAAELRPDCGVSRLLVEKLSVKAPDGPTKIKILTAIAEEHNIKWDPKSFGEKDSRPSEDLLNGPSTFSSASQMFVNPSNVQSPPNLDDKGHSIFHAPTKTNEIHGAPANVHEHNLRPPSSQTDSGANKTNFSAAFHPESMPTGSGTERMEFRHSYSGDGNASSMGGQNWNMEFKDAAAAARSAAESAERASLAARAAAELSSRGNNAWQYSADTRRDEELSRYANSTLHSEHHAKGPVNILHGRNSRMDYEQFNNHQQDDVAGVADNSHGDSLKSTNKSGQSASLKPTAASADGSAFVNNLQMADRYSRKNSSELGQKDNLSEISLKEQSSQSEVDYAGKLQGMDSKSFDDLEEAKFRNQSSHYASYSRSSTFSDDHDVSNYYNRSLGSDADENPFAVNNEGVIRTNSNKANFPVSASVVYDDYVSDEDEPKIDLQHQQKGHEYLEFSPHSGKSPTHMFSDTNAWREKQNIDESPRLPISRSHFSMEHQSDPVFTESWKSSTVPSQPDEMLPATFDDYDVPxxxxxxxxxxxxxxxxxxxxxGNIYSRTSEMTQGENHGFFSSFVDEENGSPSKPWLQSSSFDDPYSQSHRVGEGKHEQSQQPSRFSMGHEVRDNVLAKSVEDTETSKDSSPESGKELNFAMLTGGLRNKGYKHPPYVVNPSHNALLSKETTDHTSTKTEESLSATVNVSVDSGATSQDTYNRDMRAEADTRPSAGAYVGSHDDDARDEHARQTSTSSQEHYTKRGGIEENKRSSSRTQFKYFDSSNSDSEDDLPIEASTNKARFNSGLSRRTKASPSNSKGSFNSKATILSKPSVSPGYVEERNSPSRSLFSNQTSQRPLSRSKISDRLGSAAQPRLEEQAANKRIQESKRSSFNDRLKPSEKEQPSKSLRKIVTSGNTENLNSASSSEQTPSNKKASHVHPKLPDFDALTAHLQSLRTDR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1075 2.2.26 [Sep-21-2011]
Q54I39369 IST1-like protein OS=Dict no no 0.154 0.449 0.357 7e-25
P53990364 IST1 homolog OS=Homo sapi yes no 0.174 0.516 0.321 2e-23
Q568Z6366 IST1 homolog OS=Rattus no yes no 0.167 0.491 0.329 5e-23
Q5R6G8364 IST1 homolog OS=Pongo abe yes no 0.174 0.516 0.321 5e-23
Q9CX00362 IST1 homolog OS=Mus muscu yes no 0.167 0.497 0.329 5e-23
Q3ZBV1364 IST1 homolog OS=Bos tauru yes no 0.174 0.516 0.315 8e-23
P53843298 Vacuolar protein sorting- yes no 0.154 0.557 0.261 3e-09
O74490271 Vacuolar protein sorting- yes no 0.113 0.450 0.298 6e-08
>sp|Q54I39|IST1L_DICDI IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1 Back     alignment and function desciption
 Score =  117 bits (292), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 101/168 (60%), Gaps = 2/168 (1%)

Query: 10  KCKTSLKLASSRIKLLKNKRGAQVKQLKRELAQLLESGQDQTARIRVEHVVREENTMAAY 69
           K K  LKLA SRI++LKNK+   V+  KR +A+LL    +++ARIRVE ++R+E  +  +
Sbjct: 12  KLKVQLKLAVSRIQILKNKKANIVRDEKRNVAELLRKKNEESARIRVETIIRDEYLIECF 71

Query: 70  DLLEIYCELIVTRLPIVESQKNCPIDLKEAICSVIFASPRCADIPELMDVRKMFTSKYGK 129
            ++E+ CEL+  R+ ++ +    P+++KE+I +++++S R   IPEL  ++    +KYGK
Sbjct: 72  QIIEVLCELLHARINLINATTEMPLEMKESIFTLVYSSQR-IQIPELEQIKNQLKAKYGK 130

Query: 130 DFVSAAAELRPDCGVSRLLVEKLSVKAPDGPTKIKILTAIAEEHNIKW 177
             +   A       V+  +V KLS   PD     + L+ IAE+ N+ W
Sbjct: 131 G-LENEANCHCSTHVNPKIVHKLSYATPDPSIIFQTLSEIAEKFNVDW 177

Dictyostelium discoideum (taxid: 44689)
>sp|P53990|IST1_HUMAN IST1 homolog OS=Homo sapiens GN=IST1 PE=1 SV=1 Back     alignment and function description
>sp|Q568Z6|IST1_RAT IST1 homolog OS=Rattus norvegicus GN=Ist1 PE=2 SV=1 Back     alignment and function description
>sp|Q5R6G8|IST1_PONAB IST1 homolog OS=Pongo abelii GN=IST1 PE=2 SV=1 Back     alignment and function description
>sp|Q9CX00|IST1_MOUSE IST1 homolog OS=Mus musculus GN=Ist1 PE=2 SV=1 Back     alignment and function description
>sp|Q3ZBV1|IST1_BOVIN IST1 homolog OS=Bos taurus GN=IST1 PE=2 SV=1 Back     alignment and function description
>sp|P53843|IST1_YEAST Vacuolar protein sorting-associated protein IST1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IST1 PE=1 SV=1 Back     alignment and function description
>sp|O74490|IST1_SCHPO Vacuolar protein sorting-associated protein ist1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ist1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1075
2555462111155 protein with unknown function [Ricinus c 0.975 0.908 0.431 0.0
225444993 1179 PREDICTED: uncharacterized protein LOC10 0.962 0.877 0.422 0.0
3564975571064 PREDICTED: uncharacterized protein LOC10 0.948 0.958 0.414 1e-170
3565231231053 PREDICTED: uncharacterized protein LOC10 0.937 0.957 0.413 1e-166
3575011671085 IST1-like protein [Medicago truncatula] 0.919 0.910 0.366 1e-127
4494360621167 PREDICTED: uncharacterized protein LOC10 0.945 0.870 0.357 1e-122
147864968 1400 hypothetical protein VITISV_007919 [Viti 0.346 0.266 0.579 1e-111
42569161937 Regulator of Vps4 activity in the MVB pa 0.352 0.404 0.506 3e-88
110739382937 hypothetical protein [Arabidopsis thalia 0.352 0.404 0.506 3e-88
356511407579 PREDICTED: uncharacterized protein LOC10 0.381 0.708 0.494 6e-88
>gi|255546211|ref|XP_002514165.1| protein with unknown function [Ricinus communis] gi|223546621|gb|EEF48119.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1180 (43%), Positives = 693/1180 (58%), Gaps = 131/1180 (11%)

Query: 1    MLHRSFKPAKCKTSLKLASSRIKLLKNKRGAQVKQLKRELAQLLESGQDQTARIRVEHVV 60
            MLH+SFKPAKCKT+LKLA SRIKLLKNKR AQVKQLKRELAQLLESGQD+TARIRVEHVV
Sbjct: 1    MLHKSFKPAKCKTALKLAVSRIKLLKNKRDAQVKQLKRELAQLLESGQDRTARIRVEHVV 60

Query: 61   REENTMAAYDLLEIYCELIVTRLPIVESQKNCPIDLKEAICSVIFASPRCADIPELMDVR 120
            REE T+AAYDL+EIYCELIV RL I+ESQKNCPIDLKEAI SV+FASPRCAD+PELMDVR
Sbjct: 61   REEKTLAAYDLIEIYCELIVARLQIIESQKNCPIDLKEAISSVLFASPRCADVPELMDVR 120

Query: 121  KMFTSKYGKDFVSAAAELRPDCGVSRLLVEKLSVKAPDGPTKIKILTAIAEEHNIKWDPK 180
            K FT+KYGK+FVSAA ELRPDCGVSRLLVEKLS KAPDGP K+KIL+AIAEEHN+KWDP 
Sbjct: 121  KHFTAKYGKEFVSAAVELRPDCGVSRLLVEKLSAKAPDGPMKMKILSAIAEEHNVKWDPA 180

Query: 181  SFGEKDSRPSEDLLNGPSTFSSASQMFVNP-SNVQSPPNLDDKGHSIFHAPTKTNEIHGA 239
            S GE++ +P +DLLNGP+TF  AS+M     SN + PPN        F  P++  E H A
Sbjct: 181  SSGEEEMKPPDDLLNGPNTFEQASKMNTQELSNSKGPPN--------FGTPSRHYEKHDA 232

Query: 240  PANVHEHNLR-PPSSQ----TDSGANKTNFSAAFHPESMPTGSGTERMEFRHSYSGDGNA 294
              + +  N R  P SQ    T +  NK   S   HP+  P G+G+E +EF HSY  + ++
Sbjct: 233  AIDSYGSNSRSSPHSQTFPSTAADPNKAMPSGTSHPDPRPFGTGSESVEFGHSYVSEQSS 292

Query: 295  SSMGGQNWNMEFKDAAAAARSAAESAERASLAARAAAELSSRGNNAWQYSADT------R 348
             S G Q WNMEFKDA  AA++AAESAE ASLAARAAAELSS+G  + Q+S ++      R
Sbjct: 293  FSTGRQGWNMEFKDATTAAQAAAESAELASLAARAAAELSSQGRISRQHSTESIKASAFR 352

Query: 349  RDEELSRYANSTLHSEHHAKGPVNILHGR-NSRMDYEQFNNHQQDDVAGVADNSHGDSLK 407
                L  +A S L  E   + PVN    + NSRM  EQ +  + DD+A +A+  +   LK
Sbjct: 353  SKNGLQNHAQSRLQDEEFGQVPVNNASRKSNSRMHLEQSSEKELDDLASLAERFY--ILK 410

Query: 408  STNKSGQSASLKPTAASADGSAFVNNLQMADRYSRKNSSELGQKDNLSEISLKEQSSQSE 467
            S+N+S QSAS   + +S      ++++QMA R+SRK S EL + D   E+++K +SS+SE
Sbjct: 411  SSNESSQSASSNYSNSSVIDHPQLDDVQMAHRHSRKTSYELEKNDLFGEVNMKRESSESE 470

Query: 468  VDYAGKL-QGMDSKSFDDLEEAKFRNQSSHYASYSRSSTFSDDHDV-SNYYNRSLGSDAD 525
            V++A ++  G+ S++    EEA  R QSS+ +S+  S      H+V S++ +R    +A 
Sbjct: 471  VEFASEVDNGLKSENVGYFEEASIRKQSSNGSSHPHS-----HHNVFSSFSSRKFTEEAV 525

Query: 526  ENPFAVNNEGVIRTNSNKANFPVSASVVYDDYVSDEDEPKIDLQHQQKGHEYLEFS-PHS 584
            + PF V ++G I+ +SN  N     +  +DD  SD+DE K D + +  G +   +  P  
Sbjct: 526  KEPF-VFDDGKIQRDSNDTNSYSYPAASFDDSGSDDDELKFDGKGEFNGQDSSSYYFPEG 584

Query: 585  GKSPTHMFSDTNAWREKQNIDESPRLPISRSHFSMEHQSDPVFTESWKSSTVPSQPDEML 644
             K P+++ + T+A   + ++ ES R   S+S F+ +  S  VF+ES +S T+PSQ D++L
Sbjct: 585  RKPPSYLLASTSAKSPRLSMQESLRNFSSQSPFASDSHSTNVFSESSRSDTIPSQADDLL 644

Query: 645  PATFDDYDVPISKSEEELDKAKQDKSKDTN-------------EGNI--YSRTSEMTQGE 689
            P TFDD D P S SE ELD++K   +K T+              GN+  + + S + + E
Sbjct: 645  PVTFDDSDGPSSGSEGELDESKLVANKRTSTFLNDDSSSYPEKTGNVKPHLKGSALAEKE 704

Query: 690  NHGFFSSFVDEENGSPSKPWLQ-----SSSFDDPYSQSH---RVGEGKHEQSQQPSRFS- 740
            N G   S +D E    S+   +      +  D  YS  +       G  E+SQ  S  + 
Sbjct: 705  NMGSKPSAIDSEVEVHSQRTQEIEVGAQTETDRKYSYGYLHTNQTSGILEKSQSSSNHNE 764

Query: 741  -----MGHEVRDNVLAKSVEDTETSKDSSPESGKELNFAMLTGGLRNKGYKHPPYVVNPS 795
                 +  +V+      ++ED +    SS ESG+ELNF +LTGG RNKGY+HPPY  N S
Sbjct: 765  NSVSLVNEDVQKYQSLDTLEDRKPVTYSSLESGQELNFGILTGGFRNKGYRHPPYRRNAS 824

Query: 796  HNALLSKETTDHTSTKTEESLSATVNVSVDSGATSQDTYNRDMRAEADTRPSAGA---YV 852
            +++ +SK   +   T+ ++  S+++N+ + SGA  Q++  + +  +     + G+   Y 
Sbjct: 825  NSSSVSKHIEEDKYTRIKQP-SSSLNIDIVSGAHDQESQGQLVHQKVHKNATFGSPAPYS 883

Query: 853  GSHDDDARDEHARQTSTSSQEHYTKRGGIEENKRSSSRTQFKYFDSSNSDSEDDLPIEAS 912
             + +D++ DE  +QT  SSQE   +  G E NK+   R+   YFDS  SDSE+DLP E  
Sbjct: 884  DASNDESDDELPQQTLASSQEPDIRNIGSEGNKKPGLRS---YFDSDKSDSEEDLPKETG 940

Query: 913  TNKARFNSGLSRRTKA-------------------------------------------- 928
            T+K+R   G SRRTK                                             
Sbjct: 941  TSKSRLGPGFSRRTKTPLSSSEKNSSSKSRVPIKSSVTADSVVEEKSSSVSSYATETQIK 1000

Query: 929  SPSNSKGSFNSKATILSKPS-------VSP--GYVEERNSPSRSLFSNQTSQRPLSRSKI 979
             PS +K S+   +    K S       VSP    V E +S S+S +   T Q   S+S  
Sbjct: 1001 PPSQTKNSYYQSSFKQGKSSEQTSSMPVSPYKRSVHEESS-SKSYYPKDTRQNHPSQSNS 1059

Query: 980  SDRLGSAAQPRLEEQAANKRIQESKRSSFNDRLKPSEKEQPSKSLRKIVTSGNTENLNSA 1039
             +    + Q +L E  ++K I ESKRSS  +  K S +EQPS    +   +G  E+  ++
Sbjct: 1060 PEYGERSGQLKLAE--SSKFIPESKRSSREEYPKSSAREQPSNLSPR---TGGAESTKTS 1114

Query: 1040 SSSEQTPSNK----KASHVHPKLPDFDALTAHLQSLRTDR 1075
            SS    PS +    KASHVHPKLPD+D LTAHL SLR +R
Sbjct: 1115 SSPADPPSRENSINKASHVHPKLPDYDILTAHLLSLRQNR 1154

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225444993|ref|XP_002279892.1| PREDICTED: uncharacterized protein LOC100256064 [Vitis vinifera] gi|297738702|emb|CBI27947.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356497557|ref|XP_003517626.1| PREDICTED: uncharacterized protein LOC100791547 [Glycine max] Back     alignment and taxonomy information
>gi|356523123|ref|XP_003530191.1| PREDICTED: uncharacterized protein LOC100796620 [Glycine max] Back     alignment and taxonomy information
>gi|357501167|ref|XP_003620872.1| IST1-like protein [Medicago truncatula] gi|355495887|gb|AES77090.1| IST1-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449436062|ref|XP_004135813.1| PREDICTED: uncharacterized protein LOC101217093 [Cucumis sativus] gi|449489926|ref|XP_004158460.1| PREDICTED: uncharacterized LOC101217093 [Cucumis sativus] Back     alignment and taxonomy information
>gi|147864968|emb|CAN83622.1| hypothetical protein VITISV_007919 [Vitis vinifera] Back     alignment and taxonomy information
>gi|42569161|ref|NP_179561.2| Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana] gi|330251822|gb|AEC06916.1| Regulator of Vps4 activity in the MVB pathway protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110739382|dbj|BAF01603.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356511407|ref|XP_003524418.1| PREDICTED: uncharacterized protein LOC100799050 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1075
TAIR|locus:2052035937 AT2G19710 "AT2G19710" [Arabido 0.441 0.506 0.407 2e-96
TAIR|locus:21183341090 AT4G29440 "AT4G29440" [Arabido 0.442 0.436 0.368 6.6e-80
TAIR|locus:2127988466 AT4G35730 "AT4G35730" [Arabido 0.200 0.463 0.532 4.5e-67
TAIR|locus:2026150649 AT1G34220 "AT1G34220" [Arabido 0.133 0.221 0.625 5.6e-66
TAIR|locus:2031250323 AT1G25420 [Arabidopsis thalian 0.182 0.606 0.5 3.2e-55
TAIR|locus:2009892409 AT1G13340 [Arabidopsis thalian 0.162 0.427 0.365 1.5e-29
TAIR|locus:2046951454 AT2G14830 [Arabidopsis thalian 0.158 0.374 0.352 3.9e-29
TAIR|locus:2017869381 AT1G79910 "AT1G79910" [Arabido 0.159 0.448 0.311 5.3e-28
UNIPROTKB|E2RPE3366 IST1 "Uncharacterized protein" 0.180 0.530 0.318 4.5e-27
MGI|MGI:1919205362 Ist1 "increased sodium toleran 0.167 0.497 0.329 2.5e-26
TAIR|locus:2052035 AT2G19710 "AT2G19710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 848 (303.6 bits), Expect = 2.0e-96, Sum P(2) = 2.0e-96
 Identities = 209/513 (40%), Positives = 282/513 (54%)

Query:     1 MLHRSFKPAKCKTSLKLASSRIKLLKNKRGAQVKQLKRELAQLLESGQDQTARIRVEHVV 60
             +L R FKPAKCKT+L++A+SR+K+LKNK+  Q+KQL+RELAQLLESGQ  TARIRVEHVV
Sbjct:     4 VLQRGFKPAKCKTALQMANSRLKILKNKKEIQIKQLRRELAQLLESGQTPTARIRVEHVV 63

Query:    61 REENTMAAYDLLEIYCELIVTRLPIVESQKNCPIDLKEAICSVIFASPRCADIPELMDVR 120
             REE T+AAY+L+ IYCEL+V RL ++ESQKNCPIDLKEA+ SV+FAS R +D+PEL ++ 
Sbjct:    64 REEKTVAAYELIGIYCELLVVRLGVIESQKNCPIDLKEAVTSVLFASQRLSDVPELSEIF 123

Query:   121 KMFTSKYGKDFVSAAAELRPDCGVSRLLVEKLSVKAPDGPTKIKILTAIAEEHNIKWDPK 180
             K FT+KYGKDF ++A ELRPD GVSRLLVEKLS KAPDGPTK+KIL AIAEEHN+ W+ +
Sbjct:   124 KQFTTKYGKDFSTSAVELRPDSGVSRLLVEKLSAKAPDGPTKVKILMAIAEEHNVVWEAQ 183

Query:   181 SFGEKDSRPSEDLLNGPSTFSSASQMFVNPS---NVQSPPNLDDKGHSIFHAPTKTNEIH 237
             SF E D + +E LLNG ++F  AS M ++ S   N + PPN+        HAP   N  H
Sbjct:   184 SFVESDPKDTE-LLNGANSFQPASSMNMDSSINSNKEQPPNI--------HAPATVNAHH 234

Query:   238 GAPANVHE-HNLRPPSSQTDSGANKTNFSAA---FHPESMPTGSGTERMEFRHSYSGDGN 293
             G+    H   N      ++ S +N      A   +H ++ P+ S  +  E R+   G  N
Sbjct:   235 GSSERHHSPENSYANGGRSSSRSNNVTSGKADDYYHSKARPSRSRPDEGECRNPNHGYEN 294

Query:   294 ASSMGGQNWNMEFKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNNAWQYSADTR----- 348
             +SS   Q W  EF D                                 Q S  +      
Sbjct:   295 SSSRNKQKWEPEFVDSTDAARAAAEAAERASFAARAAAELSNKERMTRQDSTQSHISSAS 354

Query:   349 ---RDEELSRYANSTLHSEHHAKGPVNILHGRNSRMDYEQFNNHQQD------DVAGVAD 399
                R+E   R   S    E  ++  V+    RN RM YE  +  +QD       +  V  
Sbjct:   355 VNLRNEPSHRRDRSNAQRESFSEDHVS--PRRNVRMQYEDMDRTRQDRYDRAEQIPPVDQ 412

Query:   400 NSHGDSLKSTNKSGQSASLK-PTAASAD---G-SAFVNNLQMADRYS-RKNSSELGQKDN 453
              S   S+ ++  +G     K P+    D   G S  V+  + + R S   +SS    +++
Sbjct:   413 PSGRHSVDNSRNNGSFGREKQPSQDETDINVGYSEDVHLRKQSSRVSSHSHSSNYSDEND 472

Query:   454 LSEISLKEQSSQSEVDYAGKLQGMDSKSFDDLE 486
             L    +K  S   E  +A +       SF D++
Sbjct:   473 LGSDFMKSPSIVEENIFATEYDHQSQSSFKDID 505
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2118334 AT4G29440 "AT4G29440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127988 AT4G35730 "AT4G35730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026150 AT1G34220 "AT1G34220" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031250 AT1G25420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009892 AT1G13340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046951 AT2G14830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017869 AT1G79910 "AT1G79910" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2RPE3 IST1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1919205 Ist1 "increased sodium tolerance 1 homolog (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016603001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (1170 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1075
pfam03398165 pfam03398, Ist1, Regulator of Vps4 activity in the 2e-81
>gnl|CDD|217533 pfam03398, Ist1, Regulator of Vps4 activity in the MVB pathway Back     alignment and domain information 
 Score =  261 bits (670), Expect = 2e-81
 Identities = 86/166 (51%), Positives = 123/166 (74%), Gaps = 1/166 (0%)

Query: 12  KTSLKLASSRIKLLKNKRGAQVKQLKRELAQLLESGQDQTARIRVEHVVREENTMAAYDL 71
           KT LKLA SR+KLL+NK+ A  KQ +R++AQLL+ G++ +ARIRVE V+RE+N + A ++
Sbjct: 1   KTQLKLAISRLKLLQNKKEALAKQARRDVAQLLKLGKEDSARIRVEQVIREDNYLEALEI 60

Query: 72  LEIYCELIVTRLPIVESQKNCPIDLKEAICSVIFASPRCADIPELMDVRKMFTSKYGKDF 131
           LE+YCEL++ R+ ++E  K CP +LKEA+ S+IFA+PRC ++PEL  +R +   KYGK+F
Sbjct: 61  LELYCELLLARVSLLEKSKECPDELKEAVASLIFAAPRCGELPELQQLRDLLAEKYGKEF 120

Query: 132 VSAAAELRPDCGVSRLLVEKLSVKAPDGPTKIKILTAIAEEHNIKW 177
            +AA + R DCGV+  +VEKLSVK P      K L  IA+E+N+ W
Sbjct: 121 AAAAVDNR-DCGVNPKIVEKLSVKPPSEELVEKYLKEIAKEYNVPW 165

ESCRT-I, -II, and -III are endosomal sorting complexes required for transporting proteins and carry out cargo sorting and vesicle formation in the multivesicular bodies, MVBs, pathway. These complexes are transiently recruited from the cytoplasm to the endosomal membrane where they bind transmembrane proteins previously marked for degradation by mono-ubiquitination. Assembly of ESCRT-III, a complex composed of at least four subunits (Vps2, Vps24, Vps20, Snf7), is intimately linked with MVB vesicle formation, its disassembly being an essential step in the MVB vesicle formation, a reaction that is carried out by Vps4, an AAA-type ATPase. The family Ist1 is a regulator of Vps4 activity; by interacting with Did2 and Vps4, Ist1 appears to regulate the recruitment and oligomerisation of Vps4. Together Ist1, Did2, and Vta1 form a network of interconnected regulatory proteins that modulate Vps4 activity, thereby regulating the flow of cargo through the MVB pathway. Length = 165

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1075
KOG2027388 consensus Spindle pole body protein [Cytoskeleton] 100.0
PF03398165 Ist1: Regulator of Vps4 activity in the MVB pathwa 100.0
KOG3232203 consensus Vacuolar assembly/sorting protein DID2 [ 90.16
KOG3230224 consensus Vacuolar assembly/sorting protein DID4 [ 89.97
PF03357171 Snf7: Snf7; InterPro: IPR005024 This is a family o 83.14
PF03882440 KicB: KicB killing factor; InterPro: IPR005582 Thi 80.71
>KOG2027 consensus Spindle pole body protein [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-56  Score=492.65  Aligned_cols=302  Identities=42%  Similarity=0.632  Sum_probs=228.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccccccCCCCCchH
Q 001451           17 LASSRIKLLKNKRGAQVKQLKRELAQLLESGQDQTARIRVEHVVREENTMAAYDLLEIYCELIVTRLPIVESQKNCPIDL   96 (1075)
Q Consensus        17 LAisRLkLLqnKK~a~iKqaRRDIAqLLk~GKeE~ARIRVEqLIREDn~IEAyEILELYCELLlaRl~lIekqKeCP~DL   96 (1075)
                      ||++||+||+|||+++++|+|||||+||+.|+.++|||||||||+|+|+|+||||||+||+||++||++|+++++||.||
T Consensus         1 l~~~Rl~lLknKk~a~~kq~RrdIA~lL~sg~~~~A~~RvE~li~ee~~~~a~e~le~fCelll~R~~~i~~~~~cp~~l   80 (388)
T KOG2027|consen    1 LAINRLKLLKNKKEALAKQLRRDIADLLKSGQDERARIRVEHLIREENLLEAYEILELFCELLLARLSLIEKQKECPDDL   80 (388)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcccCCHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCCCchhHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCc
Q 001451           97 KEAICSVIFASPRCADIPELMDVRKMFTSKYGKDFVSAAAELRPDCGVSRLLVEKLSVKAPDGPTKIKILTAIAEEHNIK  176 (1075)
Q Consensus        97 kEAVSSLIYAApR~sDLPEL~~VR~~F~~KYGKeFaeaAlEnr~~~~VN~kIVeKLSv~~PS~elV~kYLkEIAkEynI~  176 (1075)
                      +|||+|||||||||+|||||++||++|+.|||++|+..|.+++++|+||++||+||++.+|+.++|++||+|||++|+|+
T Consensus        81 ~EAVsSlifAA~R~~EvpEL~~i~~~f~~kYGk~f~~~a~~l~p~~~Vn~kiiekLs~~~P~~e~k~k~lkEIA~ey~v~  160 (388)
T KOG2027|consen   81 KEAVSSLIFAAPRLSEVPELREIRDLFVKKYGKEFVKAAIELRPGNGVNRKIIEKLSVEAPPKELKEKYLKEIAKEYNVN  160 (388)
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHHHHHHHhHHHHHHHHhccccCCcCHHHHHHhcCCCCcHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCcCCCCC-ccccCCCC-CcccccccccCCCCCCCCCCCCCCCCCccCCCCCCccccCCCCCcccC--CCCCCC
Q 001451          177 WDPKSFGEKDSRPS-EDLLNGPS-TFSSASQMFVNPSNVQSPPNLDDKGHSIFHAPTKTNEIHGAPANVHEH--NLRPPS  252 (1075)
Q Consensus       177 WdPds~eee~~k~p-edll~g~~-~~~~as~~~~~ps~~~~p~~~~~~g~s~~~~~~~~~~~~~a~~~s~~~--~~r~~~  252 (1075)
                      |+|+..+..+..++ ++++.+++ +...++.+.+.-...+.+.. -.+|+.             +..+++..  +....+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-p~~~~~-------------~~~~~~~~~~~~~~~~  226 (388)
T KOG2027|consen  161 WEPDSLSTSEEKSNHEDLLIDPSSTEQPGSGGSVEESRTQDPAE-PVKGPL-------------SGTNAMPRSENMDEAS  226 (388)
T ss_pred             cccCccccccCCCchhhccccccchhccccCCCcccCCcCCccc-cccccc-------------cccccccccccccccc
Confidence            99999999999995 44555555 11112111122221111100 001110             11111110  000001


Q ss_pred             C--CCcCCCCCCCCCCCCCCCcCCCCCCCccccccccCCCCCCCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Q 001451          253 S--QTDSGANKTNFSAAFHPESMPTGSGTERMEFRHSYSGDGNASSMGGQNWNMEFKDAAAAARSAAESAERASLAARAA  330 (1075)
Q Consensus       253 s--~~~~~~n~ss~~g~~~pe~~~~~~~~~~~~f~ds~~~~~~~~~~~~~~w~~~fkDa~sAAqAAaESAe~As~AAraA  330 (1075)
                      +  .+..........|.+++.+.++.......++...+.++  .++       +.+-|....+.++.+.++|+.+++|.+
T Consensus       227 ~s~~~s~~~~~~~~~~~~~~~p~~~~~~~~~~e~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~er~~~~~~~~  297 (388)
T KOG2027|consen  227 SSAPPSVDLPKGPTRGHGVQKPSPTEIEPEVIEAKPNIHPN--TSP-------EEPTDKDEIERQEDEASERSTSDSRST  297 (388)
T ss_pred             hhcccccccccCCCcCccccCCCcccccccccccCccCCcc--cCC-------CCCCccchhhhhhhhhhcccccccccc
Confidence            1  11122222223344444444433222223333322222  222       678889999999999999999999999


Q ss_pred             HHHhcCCCCcc
Q 001451          331 AELSSRGNNAW  341 (1075)
Q Consensus       331 aeLs~~~~~~~  341 (1075)
                      ++++....+..
T Consensus       298 ~e~~~~~~~~~  308 (388)
T KOG2027|consen  298 EEPSVEVRRPS  308 (388)
T ss_pred             ccccccccccC
Confidence            99988877543

>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function Back     alignment and domain information
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7 Back     alignment and domain information
>PF03882 KicB: KicB killing factor; InterPro: IPR005582 This family contains MukF, which are proteins involved in chromosome condensation, segregation and cell cycle progression Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1075
3frr_A191 Structure Of Human Ist1(Ntd) - (Residues 1-189)(P21 5e-25
3frs_A189 Structure Of Human Ist1(Ntd) (Residues 1-189)(P4321 3e-24
3ggy_A193 Crystal Structure Of S.Cerevisiae Ist1 N-Terminal D 2e-11
>pdb|3FRR|A Chain A, Structure Of Human Ist1(Ntd) - (Residues 1-189)(P21) Length = 191 Back     alignment and structure 
Iteration: 1

 Score =  113 bits (283), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 61/190 (32%), Positives = 113/190 (59%), Gaps = 2/190 (1%)
Query: 1   MLHRSFKPAKCKTSLKLASSRIKLLKNKRGAQVKQLKRELAQLLESGQDQTARIRVEHVV 60
           ML   FK  + + +L+L  +R+KLL+ K+    ++ ++E+A  L +G+D+ ARIRVEH++
Sbjct: 3   MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 62
Query: 61  REENTMAAYDLLEIYCELIVTRLPIVESQKNCPIDLKEAICSVIFASPRC-ADIPELMDV 119
           RE+  + A ++LE+YC+L++ R  +++S K     L E++ ++I+A+PR  +++ EL  V
Sbjct: 63  REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 122
Query: 120 RKMFTSKYGKDFVSAAAELRPDCGVSRLLVEKLSVKAPDGPTKIKILTAIAEEHNIKWDP 179
                +KY K++            V+  L+ KLSV+AP      + L  IA+ +N+ ++P
Sbjct: 123 ADQLCAKYSKEY-GKLCRTNQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEP 181
Query: 180 KSFGEKDSRP 189
            S    ++ P
Sbjct: 182 DSVVMAEAPP 191
>pdb|3FRS|A Chain A, Structure Of Human Ist1(Ntd) (Residues 1-189)(P43212) Length = 189 Back     alignment and structure
>pdb|3GGY|A Chain A, Crystal Structure Of S.Cerevisiae Ist1 N-Terminal Domain Length = 193 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1075
3frr_A191 Uncharacterized protein KIAA0174; ESCRT, ESCRT-III 1e-76
3ggy_A193 Increased sodium tolerance protein 1; ESCRT-III li 2e-64
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A Length = 191 Back     alignment and structure
 Score =  249 bits (636), Expect = 1e-76
 Identities = 61/190 (32%), Positives = 113/190 (59%), Gaps = 2/190 (1%)

Query: 1   MLHRSFKPAKCKTSLKLASSRIKLLKNKRGAQVKQLKRELAQLLESGQDQTARIRVEHVV 60
           ML   FK  + + +L+L  +R+KLL+ K+    ++ ++E+A  L +G+D+ ARIRVEH++
Sbjct: 3   MLGSGFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHII 62

Query: 61  REENTMAAYDLLEIYCELIVTRLPIVESQKNCPIDLKEAICSVIFASPRC-ADIPELMDV 119
           RE+  + A ++LE+YC+L++ R  +++S K     L E++ ++I+A+PR  +++ EL  V
Sbjct: 63  REDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAELKIV 122

Query: 120 RKMFTSKYGKDFVSAAAELRPDCGVSRLLVEKLSVKAPDGPTKIKILTAIAEEHNIKWDP 179
                +KY K++            V+  L+ KLSV+AP      + L  IA+ +N+ ++P
Sbjct: 123 ADQLCAKYSKEYGKLCRT-NQIGTVNDRLMHKLSVEAPPKILVERYLIEIAKNYNVPYEP 181

Query: 180 KSFGEKDSRP 189
            S    ++ P
Sbjct: 182 DSVVMAEAPP 191
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A Length = 193 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00