Citrus Sinensis ID: 001489

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------107
MVRKKRTEQPSTGGESSESQETSAGGGRGSQRPSERSAPPSQGGGGGGTGYQGSGRGWGPPSQQGGRGGYGGGRGRGGPQQQHYGGTSEYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGGRGGHSGGPTRSSQIPELHQATPTPFSSGVMTQPTQSQAGSSSHSPELSEVSQQFQQLSLPEEVSSSQVIQPAPPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAADWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHccccccccccccccEEEEccccccccccEEEEEEcccccccccccccEEEEEEEEEEEccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccEEEEEcEEEcccccccEEEEEEEEcEEEEEccccHHHHHHHHHccccccccccHHHHHHHHHHHcccEEEEEEccccccEEEEEcccccccccccccccccccEEEEHHHHHHHHccccccccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHcccEEcccccEEEEEEEccccEEEccccccccccccccccccccccEEccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccccHHHHHHHHHHcccccccEEEcccccccccHHHHHHHHHHHHcccccEEEEEcccccccccccccccEEEEEEcccccccccccccEEEEEccccccccEEEEEcccccHHHHcccccccccccccccHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccccccccccccccccccccEEEcccccccccccEEEEEccccccccccccEEEEEccccccHHHHHHHHHHHHHccccccccEEcHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHcccccEEEc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccccEEEEEEEEcccccccHHHHHHHHHHHHHHcHHHHccccccccccccEEccccccccccEEEEEEEccccccccccccEEEEEEEEEEEEccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccEcEEccccccccccccccccEEEEccccccccccccccEEEEEccHHHHcccHHHHHHHHHHHccccccccccHHHHHHHHHHHcccEEEEEcccccEEEEEEEccccccccccEccccccccEEEHHHHHHHHcccEEEcccccccEcccccccccccHHHHHHHcHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHcccEEccccEEEEEEEcccccEEEcccccEEEEcccccEEEccccEEEccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccccccEEEEEEEcccccccEEcEEEcccccEEEEEEEEcccccccccHHHHHHHEEEEEEEccccccEEcccccccccccccccEEEEEcccccccccccccccEEEEEccHcHHEEEEEccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccEccccccccccccccccccccccEEcccccccccccEEEEcccccccccccccEEEEEccccccHHHHHHHHHHHcHEEHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHcHHHHHEEEEc
mvrkkrteqpstggessesqetsagggrgsqrpsersappsqggggggtgyqgsgrgwgppsqqggrggygggrgrggpqqqhyggtseyqgrgrggppqpggrggygggrggvgmgsggrgghsggptrssqipelhqatptpfssgvmtqptqsqagssshspelsEVSQQFQqlslpeevsssqviqpappssksvrfplrpgrgstgtrcIVKANHffaelpdkdlhqydvtitpevtsrgvNRAVMEQLVKLYREShlgkrlpaydgrkslytagplpflskEFRITllddddgqggqrrEREFKVVIKLAARADLHHLGlflqgrqadapqEALQVLDIVLrelpttrycpvgrsfyspdlgrrqplgegleSWRGFYQsirptqmglslnidmsstafieplpviDFVQQLLnrdvssrplsdadRVKIKKALRGVRVEvthrgnmrrkyrisgltsqttgeltfpvdesgtlkSVVEYFYETYGFVIQhtqwpclqvgnqqrpnylpmevckivegqrySKRLNERQITALLKVTCqrphererDIMQTvhhnayhedpyarEFGIKISEKLASVEArilpapwlkyhdtgkekdclpqvgqwnmmnkkmvnggtvNHWICINFSRHVQDSIARGFCFELAQMCYisgmafnpepvippisarpeHVEKVLKTRYHDAMtklgqgkeLDLLIVIlpdnngslygdLKRICetdlglvsqccLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAIsrriplvsdrptiifgadvthphpgedsspsiaadwpevTKYAGLVCAQAHRQELIQDLFKtwqdpvrgavsGGMIKELLISFRRatgqkpqriifyrdgvsegqFYQVLLYELDAIRKACAslepnyqppvtFVVVQKRhhtrlfannhhdrnavdrsgnilpgtvvdskichptefdfylcshagiqgtsrpahyhvlwdenkftadgLQSLTNNLCytyarctrsvsivppaYYAHLAAFRARfymepetsdsgsmtsgtigrggmgggvgarstrgpgvgaavrplpalkeNVKRVMFYC
mvrkkrteqpstggessesqetsagggrgsqrpsersappsqggggGGTGYQGSGRGWGPPSQQGGRGGYGGGRGRGGPQQQHYGGTSEYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGGRGGHSGGPTRSSQIPELHQATPTPFSSGVMTQPTQSQAGSSSHSPELSEVSQQFQQLSLPEEVSSSQViqpappssksvrfplrpgrgstGTRCIVKANHFfaelpdkdlhqYDVTItpevtsrgvnrAVMEQLVKLYReshlgkrlpaydgrkSLYTAGPLPFLSKEFRITLLddddgqggqrrEREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRelpttrycpvgrsfyspdlgrrqPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRdvssrplsdadrvkikkalrgvrvevthrgnmrrkyrisgltsqttgeltfpvdesGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPapwlkyhdtgkEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAisrriplvsdrpTIIFGADVTHPHPGEDSSPSIAADWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFrratgqkpqRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLfannhhdrnavdrsgnilPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGTIGRGGMGGGVGARStrgpgvgaavrplpalkenvkrVMFYC
MVRKKRteqpstggessesqetsagggRGSQRPSERSAPPSQggggggtgyqgsgrgwgppsqqggrggygggrgrggpqqqhyggTSEYQgrgrggppqpggrggygggrggvgmgsggrgghsggptrssQIPELHQATPTPFSSGVMTQPTQSQAGssshspelsevsQQFQQLSLPEEVSSSQVIQPAPPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLddddgqggqrrereFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAADWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSgsmtsgtigrggmgggvgarstrgpgVGAAVRPLPALKENVKRVMFYC
******************************************************************************************************************************************************************************************************************GTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDD**********REFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDV*********RVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVT***********IAADWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYM*******************************************************
******************************************************************************************************************************************************************************************************************GTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITL************EREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLG*RQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTF**DESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLN**QITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHP*****PSIAADWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFAN************NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY***************************************RPLPALKENVKRVMFYC
****************************************************GSGRG***************************GGTSEYQGRGRGGPPQPGGRGGYGGGRGGVGMGS****************PELHQATPTP*******************************************************RFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAADWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEP********TSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC
*****************************************************************************GPQQ*HYGGTSEY*GRGRGGP*QPG************************************************************************************************VRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAADWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANN*********SGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEP**********************************AVRPLPALKENVKRVMFYC
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVRKKRTEQPSTGGESSESQETSAGGGRGSQRPSERSAPPSQGGGGGGTGYQGSGRGWGPPSQQGGRGGYGGGRGRGGPQQQHYGGTSEYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGGRGGHSGGPTRSSQIPELHQATPTPFSSGVMTQPTQSQAGSSSHSPELSEVSQQFQQLSLPEEVSSSQVIQPAPPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAADWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1068 2.2.26 [Sep-21-2011]
O043791048 Protein argonaute 1 OS=Ar yes no 0.903 0.920 0.817 0.0
Q6EU141082 Protein argonaute 1A OS=O yes no 0.984 0.971 0.750 0.0
Q7XSA21118 Protein argonaute 1B OS=O no no 0.874 0.835 0.832 0.0
Q6K9721011 Protein argonaute 1C OS=O no no 0.815 0.861 0.802 0.0
Q5Z5B21038 Protein argonaute 1D OS=O no no 0.882 0.908 0.753 0.0
Q9XGW1988 Protein argonaute 10 OS=A no no 0.803 0.868 0.767 0.0
Q69VD5979 Protein argonaute PNH1 OS no no 0.804 0.877 0.759 0.0
Q851R21058 Protein argonaute MEL1 OS no no 0.913 0.922 0.545 0.0
Q9SJK3997 Protein argonaute 5 OS=Ar no no 0.849 0.909 0.561 0.0
Q7Y0011049 Protein argonaute 12 OS=O no no 0.791 0.805 0.565 0.0
>sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1645 bits (4261), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 805/985 (81%), Positives = 872/985 (88%), Gaps = 20/985 (2%)

Query: 89   EYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGGRGGHSGGPTRSSQIPELHQATPTPFSSG 148
            EYQGRGRGGPP            G  G G G  GG S GP +   +PELHQAT +P    
Sbjct: 79   EYQGRGRGGPPH---------QGGRGGYGGGRGGGPSSGPPQRQSVPELHQAT-SPTYQA 128

Query: 149  VMTQPTQSQAGSSSHSPELSEVSQQFQQLSLPEEVSSSQVIQPAPPSSKSVRFPLRPGRG 208
            V +QPT S+  S +  PE + ++QQF+QLS+ E+ + SQ IQP P SSK+ +FP+RPG+G
Sbjct: 129  VSSQPTLSEV-SPTQVPEPTVLAQQFEQLSV-EQGAPSQAIQPIPSSSKAFKFPMRPGKG 186

Query: 209  STGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLP 268
             +G RCIVKANHFFAELPDKDLH YDVTITPEVTSRGVNRAVM+QLV  YR+SHLG RLP
Sbjct: 187  QSGKRCIVKANHFFAELPDKDLHHYDVTITPEVTSRGVNRAVMKQLVDNYRDSHLGSRLP 246

Query: 269  AYDGRKSLYTAGPLPFLSKEFRITLLDDDDGQGGQRREREFKVVIKLAARADLHHLGLFL 328
            AYDGRKSLYTAGPLPF SKEFRI LLD++ G GGQRREREFKVVIKL ARADLHHLG+FL
Sbjct: 247  AYDGRKSLYTAGPLPFNSKEFRINLLDEEVGAGGQRREREFKVVIKLVARADLHHLGMFL 306

Query: 329  QGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIR 388
            +G+Q+DAPQEALQVLDIVLRELPT+RY PVGRSFYSPD+G++Q LG+GLESWRGFYQSIR
Sbjct: 307  EGKQSDAPQEALQVLDIVLRELPTSRYIPVGRSFYSPDIGKKQSLGDGLESWRGFYQSIR 366

Query: 389  PTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVT 448
            PTQMGLSLNIDMSSTAFIE  PVI FV  LLNRD+SSRPLSDADRVKIKKALRGV+VEVT
Sbjct: 367  PTQMGLSLNIDMSSTAFIEANPVIQFVCDLLNRDISSRPLSDADRVKIKKALRGVKVEVT 426

Query: 449  HRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQ 508
            HRGNMRRKYRISGLT+  T ELTFPVDE  T KSVVEYF+ETYGF IQHTQ PCLQVGN 
Sbjct: 427  HRGNMRRKYRISGLTAVATRELTFPVDERNTQKSVVEYFHETYGFRIQHTQLPCLQVGNS 486

Query: 509  QRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPY 568
             RPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRP +RE+DI+QTV  N Y +D Y
Sbjct: 487  NRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPIDREKDILQTVQLNDYAKDNY 546

Query: 569  AREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWI 628
            A+EFGIKIS  LASVEARILP PWLKYH++G+E  CLPQVGQWNMMNKKM+NGGTVN+WI
Sbjct: 547  AQEFGIKISTSLASVEARILPPPWLKYHESGREGTCLPQVGQWNMMNKKMINGGTVNNWI 606

Query: 629  CINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMT 688
            CINFSR VQD++AR FC ELAQMCY+SGMAFNPEPV+PP+SARPE VEKVLKTRYHDA +
Sbjct: 607  CINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATS 666

Query: 689  KLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALK 748
            KL QGKE+DLLIVILPDNNGSLYGDLKRICET+LG+VSQCCLTKHVFKMSKQYMANVALK
Sbjct: 667  KLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALK 726

Query: 749  INVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAA-----DWPEV 803
            INVKVGGRNTVLVDA+SRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAA     DWPE+
Sbjct: 727  INVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEI 786

Query: 804  TKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRD 863
            TKYAGLVCAQAHRQELIQDLFK W+DP +G V+GGMIKELLI+FRR+TG KP RIIFYRD
Sbjct: 787  TKYAGLVCAQAHRQELIQDLFKEWKDPQKGVVTGGMIKELLIAFRRSTGHKPLRIIFYRD 846

Query: 864  GVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRS 923
            GVSEGQFYQVLLYELDAIRKACASLE  YQPPVTFVVVQKRHHTRLFA NH+DR++VDRS
Sbjct: 847  GVSEGQFYQVLLYELDAIRKACASLEAGYQPPVTFVVVQKRHHTRLFAQNHNDRHSVDRS 906

Query: 924  GNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLC 983
            GNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDEN FTADGLQSLTNNLC
Sbjct: 907  GNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLC 966

Query: 984  YTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGTIGRGGMGGGVGARSTR 1043
            YTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSM SG++ R   GGG+  RSTR
Sbjct: 967  YTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGSMAR---GGGMAGRSTR 1023

Query: 1044 GPGVGAAVRPLPALKENVKRVMFYC 1068
            GP V AAVRPLPALKENVKRVMFYC
Sbjct: 1024 GPNVNAAVRPLPALKENVKRVMFYC 1048
Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Requires DRB1 for directional loading of the small RNA duplex (guide stand and passenger strand) onto RISC for passenger strand degradation. Unlike animal RISC that associates in high molecular weight complex, Arabidopsis RISC is probably composed only of the AGO1 protein and associated RNA without any other proteins. Associates mainly with miRNAs of 21 nucleotide in length and preferentially recruits small RNAs with a 5' terminal uridine. Associates with 22 nucleotide miRNAs to trigger RDR6-dependent secondary siRNAs biogenesis. This pathway amplifies silencing by using the target RNA as substrate to generate secondary siRNAs. Binds to miR168 which targets its own mRNA for repression, establishing a homeostatic regulatory loop. Involved in antiviral RNA silencing by contributing to viral RNA clearance. Is capable of targeting viral RNAs with more compact structures than AGO7 which favors less structured RNA targets. May not associate with 24 nucleotide siRNAs involved in chromatin silencing. Essential for multiple processes in development. Essential for proper development of leaves and floral organs, and formation of axillary meristems. Like AGO10, required for stem cell function and organ polarity.
Arabidopsis thaliana (taxid: 3702)
>sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 Back     alignment and function description
>sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3 Back     alignment and function description
>sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1 Back     alignment and function description
>sp|Q5Z5B2|AGO1D_ORYSJ Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1 Back     alignment and function description
>sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1 Back     alignment and function description
>sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1 Back     alignment and function description
>sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SJK3|AGO5_ARATH Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2 Back     alignment and function description
>sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1068
2555706391063 eukaryotic translation initiation factor 0.986 0.991 0.865 0.0
2254642791085 PREDICTED: protein argonaute 1-like [Vit 0.996 0.980 0.826 0.0
2960880131038 unnamed protein product [Vitis vinifera] 0.955 0.982 0.813 0.0
3565600551053 PREDICTED: protein argonaute 1-like [Gly 0.976 0.990 0.829 0.0
2241204741062 argonaute protein group [Populus trichoc 0.873 0.878 0.892 0.0
3565310361058 PREDICTED: protein argonaute 1-like [Gly 0.981 0.990 0.843 0.0
4494392251064 PREDICTED: protein argonaute 1A-like [Cu 0.983 0.986 0.843 0.0
4091279481054 AGO1A [Solanum lycopersicum] gi|40989306 0.971 0.984 0.811 0.0
846889061052 AGO1-1, partial [Nicotiana benthamiana] 0.973 0.988 0.810 0.0
2986763331061 ARGONAUTE 1 [Nicotiana tabacum] 0.980 0.986 0.806 0.0
>gi|255570639|ref|XP_002526275.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223534406|gb|EEF36112.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1797 bits (4655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 932/1077 (86%), Positives = 974/1077 (90%), Gaps = 23/1077 (2%)

Query: 1    MVRKKRTEQPSTGGESSESQETSAGGGRGSQRPSERSAPPSQGGGGGGTGYQGSGRGWGP 60
            MVRK+RTE P++GGESSE  E ++GG   SQRP ER+A        G  G    GR WGP
Sbjct: 1    MVRKRRTEAPASGGESSEPHEAASGG---SQRPYERNA----PPQQGPGGPYQGGRSWGP 53

Query: 61   PSQQGGRGGYGGGRGRGGPQQQHYGGTSEYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGG 120
             SQQGGRGG G GR  G  QQQ YGG  EYQGRGRG           G G  G G  S  
Sbjct: 54   QSQQGGRGGGGRGRSGGMSQQQQYGGGPEYQGRGRGP------PQQGGRGGYGGGRSSSN 107

Query: 121  RGGH-SGGPTRSSQIPELHQATPTPFSSGVMTQPTQSQAGSSSHSPELSEV--SQQFQQL 177
            RGG  S GP+R   +PELHQAT  P+ +GV  Q   S+  SSS  PE S V  +QQ Q+L
Sbjct: 108  RGGPPSVGPSRPP-VPELHQATLAPYQAGVSPQLMPSEGSSSSGPPEPSPVVVAQQMQEL 166

Query: 178  SLPEEVSSSQVIQPAPPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTI 237
            S+ +EVSSSQ IQ  PPSSKS+RFPLRPG+GSTG RCIVKANHFFAELPDKDLHQYDVTI
Sbjct: 167  SIQQEVSSSQPIQAPPPSSKSMRFPLRPGKGSTGIRCIVKANHFFAELPDKDLHQYDVTI 226

Query: 238  TPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDDD 297
            TPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPF+SKEF+ITL+D+D
Sbjct: 227  TPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFISKEFKITLIDED 286

Query: 298  DGQGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCP 357
            DG GGQRREREF+VVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCP
Sbjct: 287  DGSGGQRREREFRVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCP 346

Query: 358  VGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQ 417
            VGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFV Q
Sbjct: 347  VGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVNQ 406

Query: 418  LLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDES 477
            LLNRDVSSRPLSDADRVKIKKALRGV+VEVTHRGNMRRKYRISGLTSQ T ELTFPVDE 
Sbjct: 407  LLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDER 466

Query: 478  GTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQIT 537
            GT+KSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCK+VEGQRYSKRLNERQIT
Sbjct: 467  GTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKVVEGQRYSKRLNERQIT 526

Query: 538  ALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHD 597
            ALLKVTCQRP ERERDIMQTVHHNAY  DPYA+EFGIKISEKLASVEARILPAPWLKYHD
Sbjct: 527  ALLKVTCQRPQERERDIMQTVHHNAYGNDPYAKEFGIKISEKLASVEARILPAPWLKYHD 586

Query: 598  TGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGM 657
            TG+EKDCLPQVGQWNMMNKKMVNGGTVN+WICINFSR+VQDS+ARGFC+ELAQMCYISGM
Sbjct: 587  TGREKDCLPQVGQWNMMNKKMVNGGTVNNWICINFSRNVQDSVARGFCYELAQMCYISGM 646

Query: 658  AFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRI 717
            AFNPEPV+PP+SARPE VEKVLKTRYHDAMTKL QGKELDLLIVILPDNNGSLYG+LKRI
Sbjct: 647  AFNPEPVLPPVSARPEQVEKVLKTRYHDAMTKLQQGKELDLLIVILPDNNGSLYGELKRI 706

Query: 718  CETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTI 777
            CETDLGLVSQCCLTKHVF+M+KQY+ANVALKINVKVGGRNTVLVDA+SRRIPLVSDRPTI
Sbjct: 707  CETDLGLVSQCCLTKHVFRMNKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTI 766

Query: 778  IFGADVTHPHPGEDSSPSIAA-----DWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVR 832
            IFGADVTHPHPGEDSSPSIAA     DWPEVTKYAGLVCAQAHRQELIQDLFK WQDPVR
Sbjct: 767  IFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKEWQDPVR 826

Query: 833  GAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNY 892
            G V+GGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNY
Sbjct: 827  GRVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNY 886

Query: 893  QPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGI 952
            QPPVTFVVVQKRHHTRLFANNH+DRNAVD+SGNILPGTVVDSKICHPTEFDFYLCSHAGI
Sbjct: 887  QPPVTFVVVQKRHHTRLFANNHNDRNAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGI 946

Query: 953  QGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY 1012
            QGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY
Sbjct: 947  QGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY 1006

Query: 1013 MEPETSDSGSMTSGTI-GRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC 1068
            MEPETSDSGSMTSG + GRGGMGGG GARSTRGP   AAVRPLPALKENVKRVMFYC
Sbjct: 1007 MEPETSDSGSMTSGPVGGRGGMGGGAGARSTRGPAASAAVRPLPALKENVKRVMFYC 1063

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225464279|ref|XP_002271225.1| PREDICTED: protein argonaute 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296088013|emb|CBI35296.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356560055|ref|XP_003548311.1| PREDICTED: protein argonaute 1-like [Glycine max] Back     alignment and taxonomy information
>gi|224120474|ref|XP_002318338.1| argonaute protein group [Populus trichocarpa] gi|222859011|gb|EEE96558.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356531036|ref|XP_003534084.1| PREDICTED: protein argonaute 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449439225|ref|XP_004137387.1| PREDICTED: protein argonaute 1A-like [Cucumis sativus] gi|449523970|ref|XP_004168996.1| PREDICTED: protein argonaute 1A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|409127948|gb|AFV15377.1| AGO1A [Solanum lycopersicum] gi|409893066|gb|AFV46190.1| argonaute1-1, partial [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|84688906|gb|ABC61502.1| AGO1-1, partial [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|298676333|dbj|BAJ09698.1| ARGONAUTE 1 [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1068
TAIR|locus:2170897988 AGO10 "ARGONAUTE 10" [Arabidop 0.804 0.869 0.756 0.0
UNIPROTKB|Q69VD5979 PHN1 "Protein argonaute PNH1" 0.808 0.881 0.750 0.0
UNIPROTKB|Q851R21058 MEL1 "Protein argonaute MEL1" 0.804 0.811 0.597 1.8e-286
TAIR|locus:2057851997 AGO5 "ARGONAUTE 5" [Arabidopsi 0.836 0.895 0.558 6e-270
ZFIN|ZDB-GENE-060503-452867 ago3b "argonaute RISC catalyti 0.751 0.926 0.434 1.8e-172
UNIPROTKB|B0JYP5860 EIF2C2 "Protein argonaute-2" [ 0.744 0.924 0.432 4.9e-172
MGI|MGI:1924100861 Ago4 "argonaute RISC catalytic 0.758 0.940 0.425 8e-172
UNIPROTKB|Q6QME8860 EIF2C2 "Protein argonaute-2" [ 0.744 0.924 0.432 1e-171
UNIPROTKB|Q9UKV8859 EIF2C2 "Protein argonaute-2" [ 0.744 0.925 0.432 1e-171
MGI|MGI:2446632860 Ago2 "argonaute RISC catalytic 0.744 0.924 0.432 1e-171
TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3506 (1239.2 bits), Expect = 0., Sum P(2) = 0.
 Identities = 664/878 (75%), Positives = 745/878 (84%)

Query:   197 KSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVK 256
             K+  F  RPG G+ GT+CIVKANHF A+LP KDL+QYDVTITPEV+S+ VNRA++ +LV+
Sbjct:   124 KNSNFAPRPGFGTLGTKCIVKANHFLADLPTKDLNQYDVTITPEVSSKSVNRAIIAELVR 183

Query:   257 LYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLXXXXXXXXX-XXXXXFKVVIKL 315
             LY+ES LG+RLPAYDGRKSLYTAG LPF  KEF + ++               +KV IK 
Sbjct:   184 LYKESDLGRRLPAYDGRKSLYTAGELPFTWKEFSVKIVDEDDGIINGPKRERSYKVAIKF 243

Query:   316 AARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGE 375
              ARA++HHLG FL G++AD PQEA+Q+LDIVLREL   R+CPVGRSF+SPD+   Q LGE
Sbjct:   244 VARANMHHLGEFLAGKRADCPQEAVQILDIVLRELSVKRFCPVGRSFFSPDIKTPQRLGE 303

Query:   376 GLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVK 435
             GLESW GFYQSIRPTQMGLSLNIDM+S AFIEPLPVI+FV QLL +DV S+PLSD+DRVK
Sbjct:   304 GLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSKPLSDSDRVK 363

Query:   436 IKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVI 495
             IKK LRGV+VEVTHR N+RRKYR++GLT+Q T EL FPVDE+ T+KSV+EYF E YGF I
Sbjct:   364 IKKGLRGVKVEVTHRANVRRKYRVAGLTTQPTRELMFPVDENCTMKSVIEYFQEMYGFTI 423

Query:   496 QHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIM 555
             QHT  PCLQVGNQ++ +YLPME CKIVEGQRY+KRLNE+QITALLKVTCQRP +RE DI+
Sbjct:   424 QHTHLPCLQVGNQKKASYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDIL 483

Query:   556 QTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMN 615
             +TV HNAY +DPYA+EFG+ ISEKLASVEARILPAPWLKYH+ GKEKDCLPQVGQWNMMN
Sbjct:   484 RTVQHNAYDQDPYAKEFGMNISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMN 543

Query:   616 KKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHV 675
             KKM+NG TV+ W C+NFSR VQ+++ARGFC EL QMC +SGM FNPEPVIP  SARP+ V
Sbjct:   544 KKMINGMTVSRWACVNFSRSVQENVARGFCNELGQMCEVSGMEFNPEPVIPIYSARPDQV 603

Query:   676 EKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVF 735
             EK LK  YH +M K  +GKEL+LL+ ILPDNNGSLYGDLKRICET+LGL+SQCCLTKHVF
Sbjct:   604 EKALKHVYHTSMNKT-KGKELELLLAILPDNNGSLYGDLKRICETELGLISQCCLTKHVF 662

Query:   736 KMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPS 795
             K+SKQY+ANV+LKINVK+GGRNTVLVDAIS RIPLVSD PTIIFGADVTHP  GE+SSPS
Sbjct:   663 KISKQYLANVSLKINVKMGGRNTVLVDAISCRIPLVSDIPTIIFGADVTHPENGEESSPS 722

Query:   796 IAA-----DWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRA 850
             IAA     DWPEVTKYAGLVCAQAHRQELIQDL+KTWQDPVRG VSGGMI++LLISFR+A
Sbjct:   723 IAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLISFRKA 782

Query:   851 TGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLF 910
             TGQKP RIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTF+VVQKRHHTRLF
Sbjct:   783 TGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLF 842

Query:   911 ANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKF 970
             ANNH D+N+ DRSGNILPGTVVD+KICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDEN F
Sbjct:   843 ANNHRDKNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNF 902

Query:   971 TADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXX 1030
             TADG+QSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY+EPE              
Sbjct:   903 TADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYLEPEIMQDNGSPGKKNTK 962

Query:  1031 XXXXXXXXXXXXXXXXVGAAVRPLPALKENVKRVMFYC 1068
                             VG  V+PLPALKENVKRVMFYC
Sbjct:   963 TTTVGD----------VG--VKPLPALKENVKRVMFYC 988
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003743 "translation initiation factor activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM;ISS
GO:0035019 "somatic stem cell maintenance" evidence=IMP
GO:0010586 "miRNA metabolic process" evidence=IMP
GO:0035198 "miRNA binding" evidence=IDA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009887 "organ morphogenesis" evidence=RCA
GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010050 "vegetative phase change" evidence=RCA
GO:0010051 "xylem and phloem pattern formation" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
GO:0048519 "negative regulation of biological process" evidence=RCA
UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-452 ago3b "argonaute RISC catalytic component 3b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B0JYP5 EIF2C2 "Protein argonaute-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1924100 Ago4 "argonaute RISC catalytic subunit 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q6QME8 EIF2C2 "Protein argonaute-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UKV8 EIF2C2 "Protein argonaute-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2446632 Ago2 "argonaute RISC catalytic subunit 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6EU14AGO1A_ORYSJNo assigned EC number0.75060.98400.9713yesno
Q6K972AGO1C_ORYSJNo assigned EC number0.80270.81550.8615nono
Q7XSA2AGO1B_ORYSJNo assigned EC number0.83280.87450.8354nono
O04379AGO1_ARATHNo assigned EC number0.81720.90350.9208yesno
Q69VD5PNH1_ORYSJNo assigned EC number0.75930.80430.8774nono
Q9XGW1AGO10_ARATHNo assigned EC number0.76790.80330.8684nono
Q5Z5B2AGO1D_ORYSJNo assigned EC number0.75360.88290.9084nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00000886001
SubName- Full=Chromosome undetermined scaffold_109, whole genome shotgun sequence; (1080 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1068
PLN03202900 PLN03202, PLN03202, protein argonaute; Provisional 0.0
cd04657426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 0.0
pfam02171296 pfam02171, Piwi, Piwi domain 1e-122
smart00950301 smart00950, Piwi, This domain is found in the prot 1e-109
cd02826393 cd02826, Piwi-like, Piwi-like: PIWI domain 1e-75
cd04658448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 3e-70
cd02846114 cd02846, PAZ_argonaute_like, PAZ domain, argonaute 8e-43
pfam02170114 pfam02170, PAZ, PAZ domain 8e-37
pfam12764102 pfam12764, Gly-rich_Ago1, Glycine-rich region of a 4e-27
pfam0869952 pfam08699, DUF1785, Domain of unknown function (DU 6e-23
cd02825115 cd02825, PAZ, PAZ domain, named PAZ after the prot 1e-12
smart00949138 smart00949, PAZ, This domain is named PAZ after th 2e-11
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 9e-08
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 2e-07
pfam12810248 pfam12810, Gly_rich, Glycine rich protein 3e-07
pfam03276582 pfam03276, Gag_spuma, Spumavirus gag protein 3e-06
PRK06958182 PRK06958, PRK06958, single-stranded DNA-binding pr 7e-06
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 2e-05
pfam06682317 pfam06682, DUF1183, Protein of unknown function (D 2e-05
pfam02084239 pfam02084, Bindin, Bindin 2e-05
pfam05268261 pfam05268, GP38, Phage tail fibre adhesin Gp38 2e-05
pfam0717291 pfam07172, GRP, Glycine rich protein family 7e-05
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 9e-05
pfam06682317 pfam06682, DUF1183, Protein of unknown function (D 2e-04
smart00157218 smart00157, PRP, Major prion protein 3e-04
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.001
pfam07466280 pfam07466, DUF1517, Protein of unknown function (D 0.002
PRK12678672 PRK12678, PRK12678, transcription termination fact 0.003
pfam04959211 pfam04959, ARS2, Arsenite-resistance protein 2 0.003
pfam06273496 pfam06273, eIF-4B, Plant specific eukaryotic initi 0.003
PRK06958182 PRK06958, PRK06958, single-stranded DNA-binding pr 0.004
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information 
 Score =  646 bits (1668), Expect = 0.0
 Identities = 348/947 (36%), Positives = 505/947 (53%), Gaps = 112/947 (11%)

Query: 178  SLPEEVSSSQVIQPAPPSSKSVRFPL-RPGRGSTGTRCIVKANHFFAEL--PDKDLHQYD 234
             +P  V   ++ +P    SK  R P+ R G GS G +  +  NHF   +  PD     Y 
Sbjct: 10   VVPPNVVPIKL-EPTKKPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYS 68

Query: 235  VTITPE----VTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFR 290
            V++T E    V  +G+ R V++++ + Y     GK   AYDG KSL+T G LP    EF 
Sbjct: 69   VSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGKDF-AYDGEKSLFTVGALPQNKLEFT 127

Query: 291  ITL---------------LDDDDGQGGQRRER------EFKVVIKLAARADLHHLGLFLQ 329
            + L                +     G ++R R       FKV I  AA+  +  +   L+
Sbjct: 128  VVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANALR 187

Query: 330  GRQADAPQEALQVLDIVLRELPTTRYCPVGR-SFYSPDLGRRQPLGEGLESWRGFYQSIR 388
            G++++  Q+AL+VLDI+LR+    + C + R SF+  D      LG G+   RGF+ S R
Sbjct: 188  GQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFR 247

Query: 389  PTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVT 448
             TQ GLSLNID+S+T  ++P PV+DF+  + N++V   P    D  K K+ L+ +RV+V+
Sbjct: 248  TTQGGLSLNIDVSTTMIVQPGPVVDFL--IANQNVRD-PFQ-IDWSKAKRMLKNLRVKVS 303

Query: 449  HRGNMRRKYRISGLTSQTTGELTFPV-------DESGTLK-SVVEYFYETYGFVIQHT-Q 499
               N   +Y+I+GL+ +   E TF +       +E  T++ +V +YF +  G  ++++  
Sbjct: 304  PS-NQ--EYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGD 360

Query: 500  WPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVH 559
             PC+ VG  +RP Y P+E+C +V  QRY+K L+  Q ++L++ + Q+P ER + +   + 
Sbjct: 361  LPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALK 420

Query: 560  HNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMV 619
             + Y  DP  R  GI IS +   VE R+LPAP LK    G  +D  P+ G+WN  NKK+V
Sbjct: 421  SSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLK---VGNGEDFFPRNGRWNFNNKKLV 477

Query: 620  NGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAF-NPEPVIP--PISAR---PE 673
                +  W  +NFS        R    +L +   + G+    P  V    P   R   P 
Sbjct: 478  EPTKIERWAVVNFSARCD---IRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPV 534

Query: 674  HVEKVLKTRYHDAMTKLGQGKELDLLIVILPD-NNGSLYGDLKRICETDLGLVSQCCLTK 732
             VEK+ +       +KL    +   L+ ILP+  N  +YG  K+   ++ G+V+QC    
Sbjct: 535  RVEKMFEQ----IQSKLPGPPQF--LLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAP- 587

Query: 733  HVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDS 792
               +++ QY+ NV LKIN K+GG N++L    S  IPLVS  PTII G DV+H  PG+  
Sbjct: 588  --TRVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSD 645

Query: 793  SPSIAA-----DWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISF 847
             PSIAA      WP +++Y   V  Q+ + E+I  LFK    PV      G+I+ELL+ F
Sbjct: 646  VPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFK----PVGDKDDDGIIRELLLDF 701

Query: 848  RRATGQ-KPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHH 906
              ++G+ KP++II +RDGVSE QF QVL  ELD I +AC  L+ ++ P  T +V QK HH
Sbjct: 702  YTSSGKRKPEQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHH 761

Query: 907  TRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWD 966
            T+ F     D        N+ PGTVVD+KICHP   DFY+C+HAG+ GT+RP HYHVL D
Sbjct: 762  TKFFQAGSPD--------NVPPGTVVDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLLD 813

Query: 967  ENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYME----PETSDS-G 1021
            E  F+AD LQ L ++L Y Y R T ++S+V P  YAHLAA +   +M+     ETS S G
Sbjct: 814  EIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSHG 873

Query: 1022 SMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC 1068
             +TS            GA           V  LP L ENV   MF+C
Sbjct: 874  GITS-----------AGA---------VPVPELPRLHENVASSMFFC 900

Length = 900
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily Back     alignment and domain information
>gnl|CDD|216914 pfam02170, PAZ, PAZ domain Back     alignment and domain information
>gnl|CDD|221759 pfam12764, Gly-rich_Ago1, Glycine-rich region of argonaut Back     alignment and domain information
>gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785) Back     alignment and domain information
>gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|221784 pfam12810, Gly_rich, Glycine rich protein Back     alignment and domain information
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein Back     alignment and domain information
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183) Back     alignment and domain information
>gnl|CDD|216868 pfam02084, Bindin, Bindin Back     alignment and domain information
>gnl|CDD|147458 pfam05268, GP38, Phage tail fibre adhesin Gp38 Back     alignment and domain information
>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183) Back     alignment and domain information
>gnl|CDD|197548 smart00157, PRP, Major prion protein Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|219420 pfam07466, DUF1517, Protein of unknown function (DUF1517) Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|218350 pfam04959, ARS2, Arsenite-resistance protein 2 Back     alignment and domain information
>gnl|CDD|218967 pfam06273, eIF-4B, Plant specific eukaryotic initiation factor 4B Back     alignment and domain information
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1068
PLN03202900 protein argonaute; Provisional 100.0
KOG1041876 consensus Translation initiation factor 2C (eIF-2C 100.0
KOG1042845 consensus Germ-line stem cell division protein Hiw 100.0
cd04657426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 100.0
cd04658448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 100.0
cd02826393 Piwi-like Piwi-like: PIWI domain. Domain found in 100.0
PF02171302 Piwi: Piwi domain; InterPro: IPR003165 This domain 100.0
cd04659404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 100.0
PF02170135 PAZ: PAZ domain; InterPro: IPR003100 This domain i 99.88
cd02846114 PAZ_argonaute_like PAZ domain, argonaute_like subf 99.84
cd02825115 PAZ PAZ domain, named PAZ after the proteins Piwi 99.82
cd02845117 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In 99.74
PF0869952 DUF1785: Domain of unknown function (DUF1785); Int 99.47
cd02844135 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( 99.45
PF12764104 Gly-rich_Ago1: Glycine-rich region of argonaut; In 99.25
COG1431685 Argonaute homolog, implicated in RNA metabolism [T 99.08
cd02843122 PAZ_dicer_like PAZ domain, dicer_like subfamily. D 98.56
PF12764104 Gly-rich_Ago1: Glycine-rich region of argonaut; In 96.24
PTZ00146293 fibrillarin; Provisional 94.85
KOG1596317 consensus Fibrillarin and related nucleolar RNA-bi 93.86
KOG1596317 consensus Fibrillarin and related nucleolar RNA-bi 93.35
PF13032138 DUF3893: Domain of unknown function (DUF3893) 87.7
COG4371334 Predicted membrane protein [Function unknown] 86.95
KOG4307944 consensus RNA binding protein RBM12/SWAN [General 85.78
>PLN03202 protein argonaute; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.6e-170  Score=1587.90  Aligned_cols=829  Identities=38%  Similarity=0.652  Sum_probs=704.9

Q ss_pred             CCCCCccCCCCCCCCCCCCcceEEeeeEEeecC--CCceeeeEEEEcCC----cccchhhHHHHHHHHHHHHhhccCCcc
Q 001489          194 PSSKSVRFPLRPGRGSTGTRCIVKANHFFAELP--DKDLHQYDVTITPE----VTSRGVNRAVMEQLVKLYRESHLGKRL  267 (1068)
Q Consensus       194 ~s~~~~~~p~RP~~Gt~G~~v~l~aN~f~v~~~--~~~iy~YdV~i~pe----~~~k~~~r~i~~~l~~~~~~~~~~~~~  267 (1068)
                      +..+...+|+||+|||.|++|.|+||||+|+++  +..||||||+|+|+    +.+++++++|++++++++... +.+..
T Consensus        26 ~~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~  104 (900)
T PLN03202         26 PSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSD-LAGKD  104 (900)
T ss_pred             ccccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHh-hCCCc
Confidence            344455788999999999999999999999974  67899999999963    445778899999998876443 44446


Q ss_pred             ceeecCceEEecCCCCCCcceEEEEEecCCCC------------CC---------CCCCCcEEEEEEEEeeeeChhhHHH
Q 001489          268 PAYDGRKSLYTAGPLPFLSKEFRITLLDDDDG------------QG---------GQRREREFKVVIKLAARADLHHLGL  326 (1068)
Q Consensus       268 ~~yDG~~~lys~~~Lp~~~~~~~v~~~~~~~~------------~~---------~~~~~~~~~V~I~~~~~~~l~~l~~  326 (1068)
                      +||||+++|||+.+||++..+|.|++.++++.            ..         ...+.+.|+|+|++++++++.+|.+
T Consensus       105 ~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~  184 (900)
T PLN03202        105 FAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIAN  184 (900)
T ss_pred             eeecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHH
Confidence            79999999999999998777788877643111            00         0124688999999999999999999


Q ss_pred             HhccCCCCChHHHHHHHHHHHccCCCCC-ccccCccccCCCCCCcccCCCCeEEEeeceeeecccCCeeEEeeecceeee
Q 001489          327 FLQGRQADAPQEALQVLDIVLRELPTTR-YCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAF  405 (1068)
Q Consensus       327 ~l~~~~~~~~~~~iq~Lniilr~~~~~~-~~~~Gr~ff~~~~~~~~~lg~gle~~~G~~~Svr~~~~~l~LniDvs~~~F  405 (1068)
                      ||.+.....+.++||+||||||+.++.. ++.+||+||+++.....+++.|+|+|+||++|||+++++|+||||+++++|
T Consensus       185 ~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F  264 (900)
T PLN03202        185 ALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMI  264 (900)
T ss_pred             HHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeee
Confidence            9999887788999999999999988765 889999999865444567899999999999999999999999999999999


Q ss_pred             ecCccHHHHHHHHhcCCCCCCCCChHHHHHHHHHhcCcEEEEeecCCCCceEEEeccCCCCCCceeeeecCC--------
Q 001489          406 IEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDES--------  477 (1068)
Q Consensus       406 ~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~l~~~L~gl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~--------  477 (1068)
                      |++++|+|+|.++.+..+    ....++.++.++|+|++|.++|+   +++|+|.+|++.++++.+|++++.        
T Consensus       265 ~~~~~l~~~l~~~~~~~~----~~~~~~~~~~~~lkGl~V~t~~~---~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~  337 (900)
T PLN03202        265 VQPGPVVDFLIANQNVRD----PFQIDWSKAKRMLKNLRVKVSPS---NQEYKITGLSEKPCKEQTFSLKQRNGNGNEVE  337 (900)
T ss_pred             ecCCcHHHHHHHhcCcCC----ccchhHHHHHHHhcCCEEEEecC---CceEEEeeccCCCCcceEEEcccCCcccccCC
Confidence            999999999998764322    11234567999999999999998   579999999999999999986521        


Q ss_pred             CcEeeHHHHHHHHcCCccCCC-CCceEEeccCCCCccccccceEeccCccccccCCHHHHHHHHHHhcCCchHHHHHHHH
Q 001489          478 GTLKSVVEYFYETYGFVIQHT-QWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQ  556 (1068)
Q Consensus       478 g~~iSV~~Yf~~~Y~i~L~~p-~lP~v~~g~~~~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~I~~  556 (1068)
                      +++|||+|||+++|||+|+|| +||||++|+.++++|||||||.|++||+++++|++.|+++||++|+.+|.+|.+.|.+
T Consensus       338 ~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~  417 (900)
T PLN03202        338 TVEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTD  417 (900)
T ss_pred             cceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHH
Confidence            358999999999999999996 9999999998889999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCCccccccceEEcccceEEeeEEcCCCceeecCCCCccccCCcCcceeccCceeeeCceeceeEEEEecCCc
Q 001489          557 TVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHV  636 (1068)
Q Consensus       557 ~~~~~~~~~~~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~l~~W~vv~~~~~~  636 (1068)
                      +++.++++.+++|++|||+|+++|++|+|||||+|+|.|+++.   .+.|.+|+|||++++|++++.+++|+||+|+++ 
T Consensus       418 ~~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~-  493 (900)
T PLN03202        418 ALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSAR-  493 (900)
T ss_pred             HHHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCc-
Confidence            9988888888999999999999999999999999999998743   245789999999999999999999999988654 


Q ss_pred             chHHHHHHHHHHHHHHHhcCcccCCCCcccCCCCC--hhhHHHHHHHHHHHHHhhccCCCCceEEEEEeeCC-CCchhhh
Q 001489          637 QDSIARGFCFELAQMCYISGMAFNPEPVIPPISAR--PEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDN-NGSLYGD  713 (1068)
Q Consensus       637 ~~~~~~~f~~~L~~~~~~~Gm~i~~~p~~~~~~~~--~~~~~~~l~~~~~~a~~~~~~~~~~~lvlvilp~~-~~~~Y~~  713 (1068)
                        ..++.|++.|.+.|+.+||.+..++.+.....+  ....+..++..++.+.++++  ..++|||||||++ +.++|+.
T Consensus       494 --~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~qlv~vIlp~~~~~~~Y~~  569 (900)
T PLN03202        494 --CDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLP--GPPQFLLCILPERKNSDIYGP  569 (900)
T ss_pred             --hhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhcc--CCCeEEEEEEcCCCCcchHHH
Confidence              257899999999999999999764322111110  01112334555554444332  4689999999974 6789999


Q ss_pred             hhhhhhcccCceeeeeeccccccccHHHHHHHHHHHHhhcCCcccccccccccCCCccCCCCeEEEEEEecCCCCCCCCC
Q 001489          714 LKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSS  793 (1068)
Q Consensus       714 IK~~~d~~~GI~TQcv~~~~~~k~~~q~~~Ni~lKiN~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~g~~~~  793 (1068)
                      ||++||+++||+||||...   +.++||++|||||||+||||+||.+..+....+|++.+.+|||||+||+||+++....
T Consensus       570 IK~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~  646 (900)
T PLN03202        570 WKKKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDV  646 (900)
T ss_pred             HHHHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCC
Confidence            9999999999999999654   3478999999999999999999998765445578888889999999999999986557


Q ss_pred             CeeEe-----cCCCcceeeeEEEEccCCchhhhhhhccccCCCcCcchhHHHHHHHHHHHHHc-CCCCceEEEEecCCCh
Q 001489          794 PSIAA-----DWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRAT-GQKPQRIIFYRDGVSE  867 (1068)
Q Consensus       794 pSiaa-----d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~p~~~~~~~~mi~~~L~~f~~~~-~~~P~~IIiYRDGVSE  867 (1068)
                      |||||     ||+.+++|++.+++|.+++|+|++|+....+    ..+++||+++|+.|++.+ +.+|++||||||||||
T Consensus       647 pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~----~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVse  722 (900)
T PLN03202        647 PSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGD----KDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSE  722 (900)
T ss_pred             CceEEEEeccCcccccceeeEEEecCCCceeeeehhccccc----cchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCH
Confidence            99888     7778999999999999999999988533222    235899999999999875 6899999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCCCCCCCCCccceeecccccCCCcCceeec
Q 001489          868 GQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLC  947 (1068)
Q Consensus       868 gQ~~~Vl~~El~~I~~a~~~~~~~y~P~it~Ivv~KrhhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~  947 (1068)
                      |||.+|+++||++|++||++++++|+|+||||||+||||||||+.+        +.+||+||||||++||||.+||||||
T Consensus       723 GQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~--------~~~N~~pGTvVD~~it~p~~~dFyL~  794 (900)
T PLN03202        723 SQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG--------SPDNVPPGTVVDNKICHPRNNDFYMC  794 (900)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------CCCCCCCceEeccccccCCcceEEEe
Confidence            9999999999999999999998899999999999999999999863        35899999999999999999999999


Q ss_pred             cccCccccccCceEEEEecCCCCCHHHHHHHHHHhhccccccCCCccccchhHHHHHHHHHhhhhcCcccCCCCCcccCC
Q 001489          948 SHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGT 1027 (1068)
Q Consensus       948 Sh~~~qGTarPthY~VL~De~~~~~d~Lq~LT~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~~~~d~~s~~~~~ 1027 (1068)
                      ||.++|||||||||+||+||+++++|+||+|||+|||+|+|||++||||||||||||+|+|||+||..+.++++++++++
T Consensus       795 Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~~~~~~  874 (900)
T PLN03202        795 AHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSHGG  874 (900)
T ss_pred             cccccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhccccCCccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999985432222211111


Q ss_pred             CCCCCCCCCCCCccCCCCCCCCCCCCCcccccccccCeeeC
Q 001489         1028 IGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC 1068 (1068)
Q Consensus      1028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~~~~~M~y~ 1068 (1068)
                      +++           +    ...+...+++||+||+++||||
T Consensus       875 ~~~-----------~----~~~~~~~~~~~h~~~~~~Mfy~  900 (900)
T PLN03202        875 ITS-----------A----GAVPVPELPRLHENVASSMFFC  900 (900)
T ss_pred             cCC-----------C----CccccccccccchhhcCCeeeC
Confidence            100           0    0111235788999999999998

>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily Back     alignment and domain information
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily Back     alignment and domain information
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO Back     alignment and domain information
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily Back     alignment and domain information
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins Back     alignment and domain information
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily Back     alignment and domain information
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins Back     alignment and domain information
>PTZ00146 fibrillarin; Provisional Back     alignment and domain information
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] Back     alignment and domain information
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] Back     alignment and domain information
>PF13032 DUF3893: Domain of unknown function (DUF3893) Back     alignment and domain information
>COG4371 Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1068
4f3t_A861 Human Argonaute-2 - Mir-20a Complex Length = 861 0.0
4ei1_A859 Crystal Structure Of Human Argonaute2 Length = 859 0.0
3vna_A154 Structural Insights Into Small Rna Sorting And Mrna 2e-77
4g0p_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 3e-76
3vnb_A155 Structural Insights Into Small Rna Sorting And Mrna 4e-74
4g0x_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 2e-73
4f1n_A1046 Crystal Structure Of Kluyveromyces Polysporus Argon 4e-45
2yhb_A437 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 3e-44
4g0o_A139 Crystal Structure Of Arabidopsis Thaliana Ago5 Mid 4e-37
1r4k_A169 Solution Structure Of The Drosophila Argonaute 1 Pa 1e-28
2yha_A388 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 2e-27
1si2_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 1e-26
1si3_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 4e-25
4g0m_A150 Crystal Structure Of Arabidopsis Thaliana Ago2 Mid 7e-12
3luc_A138 Crystal Structure Of Mid Domain From Hago2 Length = 5e-09
3luk_A138 Crystal Structure Of Mid Domain From Hago2 Length = 7e-08
1r6z_P509 The Crystal Structure Of The Argonaute2 Paz Domain 5e-07
1vyn_A143 Structure And Nucleic Acid Binding Of The Drosophil 6e-07
1t2r_A123 Structural Basis For 3' End Recognition Of Nucleic 9e-06
3mj0_A124 Crystal Structure Of Drosophia Ago-Paz Domain In Co 1e-05
2xdy_A145 Crystal Structure Of The N. Crassa Qde-2 Ago Mid Do 1e-04
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 Back     alignment and structure 
Iteration: 1

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/834 (43%), Positives = 504/834 (60%), Gaps = 50/834 (5%)
Query: 202  PLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRES 261
            P RP  G++G    ++AN F  ++P  D++ Y++ I PE   R VNR ++E +V+ ++  
Sbjct: 28   PPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQ 87
Query: 262  HLGKRLPAYDGRKSLYTAGPLPFLSK--EFRITLLXXXXXXXXXXXXXXFKVVIKLAARA 319
              G R P +DGRK+LYTA PLP      E  +TL               FKV IK  +  
Sbjct: 88   IFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTL-------PGEGKDRIFKVSIKWVSCV 140
Query: 320  DLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLES 379
             L  L   L GR    P E +Q LD+V+R LP+ RY PVGRSF++   G   PLG G E 
Sbjct: 141  SLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREV 200
Query: 380  WRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNR---DVSSRPLSDADRVKI 436
            W GF+QS+RP+   + LNID+S+TAF +  PVI+FV ++L+    +   +PL+D+ RVK 
Sbjct: 201  WFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKF 260
Query: 437  KKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVD-ESGTLK--SVVEYFYETYGF 493
             K ++G++VE+TH G M+RKYR+  +T +     TFP+  ESG     +V +YF + +  
Sbjct: 261  TKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKL 320
Query: 494  VIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERD 553
            V+++   PCLQVG +Q+  YLP+EVC IV GQR  K+L + Q + +++ T +   +R+ +
Sbjct: 321  VLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEE 380
Query: 554  IMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKD-CLPQVGQWN 612
            I + +   +++ DPY REFGI + +++  V  R+L  P + Y   G+ K    P  G W+
Sbjct: 381  ISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILY--GGRNKAIATPVQGVWD 438
Query: 613  MMNKKMVNGGTVNHWI--CINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISA 670
            M NK+   G  +  W   C    R   +   + F  +L ++   +GM    +P     + 
Sbjct: 439  MRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQ 498
Query: 671  RPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCL 730
              + VE + +   H   T  G    L L++VILP     +Y ++KR+ +T LG+ +QC  
Sbjct: 499  GADSVEPMFR---HLKNTYAG----LQLVVVILPGKT-PVYAEVKRVGDTVLGMATQCVQ 550
Query: 731  TKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGE 790
             K+V + + Q ++N+ LKINVK+GG N +L   + +  P V  +P I  GADVTHP  G+
Sbjct: 551  MKNVQRTTPQTLSNLCLKINVKLGGVNNIL---LPQGRPPVFQQPVIFLGADVTHPPAGD 607
Query: 791  DSSPSIAADWPEV----TKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLIS 846
               PSIAA    +     +Y   V  Q HRQE+IQDL               M++ELLI 
Sbjct: 608  GKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQ 654
Query: 847  FRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHH 906
            F ++T  KP RIIFYRDGVSEGQF QVL +EL AIR+AC  LE +YQP +TF+VVQKRHH
Sbjct: 655  FYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHH 714
Query: 907  TRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWD 966
            TRLF  + ++R  V +SGNI  GT VD+KI HPTEFDFYLCSHAGIQGTSRP+HYHVLWD
Sbjct: 715  TRLFCTDKNER--VGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWD 772
Query: 967  ENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 1020
            +N+F++D LQ LT  LC+TY RCTRSVSI  PAYYAHL AFRAR+++  +  DS
Sbjct: 773  DNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDS 826
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 Back     alignment and structure
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 Back     alignment and structure
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 Back     alignment and structure
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 Back     alignment and structure
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 Back     alignment and structure
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 Back     alignment and structure
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 Back     alignment and structure
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 Back     alignment and structure
>pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz Domain Length = 169 Back     alignment and structure
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 Back     alignment and structure
>pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Of Deoxynucleotide Overhang Length = 149 Back     alignment and structure
>pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Length = 149 Back     alignment and structure
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain Length = 150 Back     alignment and structure
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A Mbp Fusion) Length = 509 Back     alignment and structure
>pdb|1T2R|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids By The Drosophila Argonaute 2 Paz Domain Length = 123 Back     alignment and structure
>pdb|3MJ0|A Chain A, Crystal Structure Of Drosophia Ago-Paz Domain In Complex With 3'-End 2'-O-Methylated Rna Length = 124 Back     alignment and structure
>pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain Length = 145 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1068
d1yvua2392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 1e-105
d1w9ha1316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 5e-78
d1u04a2447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 2e-66
d1si2a_126 b.34.14.1 (A:) Eukaryotic translation initiation f 2e-46
d1t2sa_123 b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila 7e-46
d1u04a1322 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py 9e-14
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

 Score =  333 bits (854), Expect = e-105
 Identities = 62/411 (15%), Positives = 130/411 (31%), Gaps = 75/411 (18%)

Query: 624  VNHWICINFSRHVQDSI-ARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTR 682
            V     I+ S + +       F  EL       G+    +     ++   E  ++ L   
Sbjct: 37   VLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPV 96

Query: 683  YHDAMTKLGQGKELDLLIVILPDNNGS-------LYGDLKRICETDLGLVSQCCLTKHVF 735
             +         K++DL+IV L +           LY  +KR       + SQ  L + + 
Sbjct: 97   INKI-------KDVDLVIVFLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLK 148

Query: 736  KMSKQYMA-NVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSP 794
              + +++  NVA ++  K G     L +        +  +     G D++       +  
Sbjct: 149  NENLKFVLLNVAEQVLAKTGNIPYKLKE--------IEGKVDAFVGIDISRITRDGKTVN 200

Query: 795  SIAA-----DWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRR 849
            ++A         E+ +Y  L    A  ++L +                  I ++     +
Sbjct: 201  AVAFTKIFNSKGELVRYY-LTSYPAFGEKLTEK----------------AIGDVFSLLEK 243

Query: 850  ATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRL 909
               +K  +I+ +RDG            E+ A +K        Y   +  + + KR++ R 
Sbjct: 244  LGFKKGSKIVVHRDGRLYRD-------EVAAFKKYG----ELYGYSLELLEIIKRNNPRF 292

Query: 910  FANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENK 969
            F+N              + G           +       +   +GT +P     ++ E  
Sbjct: 293  FSN-----------EKFIKGYFYK----LSEDSVILATYNQVYEGTHQPIKVRKVYGELP 337

Query: 970  FTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 1020
               + L S   +L        + + +    +Y+          +EP   + 
Sbjct: 338  V--EVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPIKKEG 386
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1068
d1yvua2392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 100.0
d1u04a2447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1w9ha1316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 100.0
d1u04a1322 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1si2a_126 Eukaryotic translation initiation factor 2C 1, EIF 99.97
d1t2sa_123 Argonaute 2 {Fruit fly (Drosophila melanogaster) [ 99.96
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=0  Score=522.82  Aligned_cols=333  Identities=18%  Similarity=0.161  Sum_probs=266.3

Q ss_pred             EECEEEEEEECC-CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             205159999268-8666899999999999988429545899920689999055999999999999865069998519999
Q 001489          623 TVNHWICINFSR-HVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIV  701 (1068)
Q Consensus       623 ~i~~W~vv~~~~-~~~~~~~~~f~~~l~~~~~~~Gi~i~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lvlv  701 (1068)
                      .+..|.+|.+.. +..+..+++|+++|.+.|+.+||++..+|..........+.+..+...+++       .+.+++++|
T Consensus        36 ~~~~~~~i~~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~v  108 (392)
T d1yvua2          36 DVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPVINK-------IKDVDLVIV  108 (392)
T ss_dssp             SEEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEEEECSSTTHHHHHHHHHHTT-------TSSCSEEEE
T ss_pred             CCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEECCCCCCHHHHHHHHHHH-------CCCCCEEEE
T ss_conf             6344247899996310667999999999999862926457886713127751159999999840-------267778999


Q ss_pred             EEECCCC-------CHHHHHHHHHHCCCCCEEEEEECCCCCCCCHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9508998-------30445556521134720133300220244177-999999999851397221012110147776579
Q 001489          702 ILPDNNG-------SLYGDLKRICETDLGLVSQCCLTKHVFKMSKQ-YMANVALKINVKVGGRNTVLVDAISRRIPLVSD  773 (1068)
Q Consensus       702 ilp~~~~-------~~Y~~IK~~~d~~~GI~TQci~~~~~~k~~~q-~~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~~~  773 (1068)
                      |++++..       ++|..||+.| ++.||+||||+.+++.+.+.+ ++.||+||||+||||+||.|.+.     +   .
T Consensus       109 i~~~~~~~~~~~~~~~Y~~IK~~~-~~~gIptQ~i~~~tl~~~~~~~~~~NIalqinaKlGGipw~l~~~-----~---~  179 (392)
T d1yvua2         109 FLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEI-----E---G  179 (392)
T ss_dssp             EEC----------CHHHHHHHHHH-HHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESCC-----T---T
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEECHHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCCC-----C---C
T ss_conf             976888866555404799999998-549966489886661689835899999999999849834688788-----9---9


Q ss_pred             CCEEEEEEEECCCCCCCCCCCEEEE----C-CCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             9919999972189999999982673----1-8985305669997168714203100003688767540579999999999
Q 001489          774 RPTIIFGADVTHPHPGEDSSPSIAA----D-WPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFR  848 (1068)
Q Consensus       774 ~~tmiiG~DVsHp~~g~~~~pSiaa----d-~~~~~ky~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~i~~~L~~f~  848 (1068)
                      .+|||||+||+|++++....+++++    + +.. ..+......|..++|++.                +++.++|..|+
T Consensus       180 ~~tmiIGiDv~h~~~~~~~~~~v~~~~~~~~~g~-~~~~~~~~~~~~~ee~~~----------------~~~~~~l~~~~  242 (392)
T d1yvua2         180 KVDAFVGIDISRITRDGKTVNAVAFTKIFNSKGE-LVRYYLTSYPAFGEKLTE----------------KAIGDVFSLLE  242 (392)
T ss_dssp             CCSEEEEECEEECCCSSSCCCEEEEEEEECTTSC-EEEEEEEEECSCTTHHHH----------------HHHHHHHHHHH
T ss_pred             CCEEEEEEEEEECCCCCCCCCEEEEEEEECCCCC-EEEEEEEECCCCCHHHHH----------------HHHHHHHHHHH
T ss_conf             9759999998715888984638999999868997-789998854776078999----------------99999999999


Q ss_pred             HHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99099994499982577915799999999999999999509999999999999413333323358999787778888866
Q 001489          849 RATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILP  928 (1068)
Q Consensus       849 ~~~~~~P~~IIiyRDGVSEGQf~~Vl~~Ei~~ik~a~~~~~~~y~P~it~Ivv~KRhhtRff~~~~~~~~~~~~~~N~~p  928 (1068)
                      ++++.+|++|||||||+++       ++|+++|++||.++    .|+|+||+|+||||+|||+.+           |+++
T Consensus       243 ~~~~~~P~rIIi~RdG~~~-------~~El~~i~~a~~~~----~pki~~IvV~Krh~~Rff~~~-----------~~~~  300 (392)
T d1yvua2         243 KLGFKKGSKIVVHRDGRLY-------RDEVAAFKKYGELY----GYSLELLEIIKRNNPRFFSNE-----------KFIK  300 (392)
T ss_dssp             HTTCCTTCEEEEEESSCCC-------HHHHHHHHHHHHHH----TCEEEEEEEECSSCCCEECSC-----------SCCT
T ss_pred             HHCCCCCCEEEEEECCCCC-------HHHHHHHHHHHHHC----CCCEEEEEEEECCCEEECCCC-----------CCCC
T ss_conf             9649998669999588773-------79999999999864----995899999815882656789-----------9999


Q ss_pred             CEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             20311565678857366212567656446863799834998898889999999530565247774456156879999999
Q 001489          929 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFR 1008 (1068)
Q Consensus       929 GTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~VL~De~~~~~d~Lq~LT~~LCy~y~r~t~sVSip~P~yYA~l~a~R 1008 (1068)
                      ||+|+    .+..++|||+||.++|||+||+||+||+||+  +.|+||+|||+|||+|+|||++||+|+|+||||++|+|
T Consensus       301 Gt~v~----~~~~~~~~~~s~~~~qGT~rP~~Y~vl~d~~--~~d~l~~lt~~Lc~l~~~~t~svslPapi~YA~~lA~~  374 (392)
T d1yvua2         301 GYFYK----LSEDSVILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKL  374 (392)
T ss_dssp             TEEEE----BSSSEEEECCSCCCSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHH
T ss_pred             CCEEE----CCCCEEEEEECCCCCCCCCCCCEEEEECCCC--CHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHH
T ss_conf             98771----7989299997688578777885899988989--98999999999775126718998007799999999999


Q ss_pred             HHHHCCCC
Q ss_conf             65302766
Q 001489         1009 ARFYMEPE 1016 (1068)
Q Consensus      1009 ar~~~~~~ 1016 (1068)
                      +|.++++.
T Consensus       375 ~r~~~~p~  382 (392)
T d1yvua2         375 MLRGIEPI  382 (392)
T ss_dssp             HHTCSSCC
T ss_pred             HHHCCCCC
T ss_conf             75117865
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure