Citrus Sinensis ID: 001496

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------
MCIFLSLSLVPFCGGKDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKEDAGSSLQDSQDNWGKNKDACDNQANWKKSDSWDKGKKIIGNSTSSWGDKTAEKNEPDSWGKGKDGSSGSKSDWNSSALATENPTVSWGNASGGWTQQKGGNMDERSGWKKDDSGNQDQRSGWNKPKTFGADVGSSWNKQDGICSSDVQDGGSSWAKQDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSSLGKQDGGSSWGKQDGRSSLAKQDGGSSWGKQDRGSSWGKQDEGSSWSKRDGGSSWGKQDGGSSLAKQDGGSSWGKQDGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQDGGSSWSKEPDQQHRKNGGSSWGNRDGGSSWSKQTDQQDNQEKPLESDGGRGSGGRWGQGGGQGGGQEVSDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTDWNKKCNWNSGSSDGDGNNGSGGWGKKSNWNSGSSGAGESKDTDWNKKSNLNCGSSDGDGNNSSGWDKKGNWNAGSSGDGESKDTDWNKKCNWNSGSNDGDGNNGSGWGKKSNWNSGSNVAGESNDSNWAKKGNWNSGSDDANQESSWGKKQGNWNSGSRDGHQESSWGKKSDWNSRSEDQPEPFNNRGSGNFRGRGGFRGRGDSDRGGFGGRGRTNRGGYGGRGRFDREGFGGRGGSDRGGFGGRGSSDRGGFGGRGRGRRDQGGGWNNNDSGDYKSFDSSQGVKNGGEWSRSNDGAGSWSQGGGTWKSGNSGASSQDGGWSSQGSGWNNSNTTNEVKGLSDQGGGWNKGAGGSAQAGGWGRQGSGWSSGTSTGNRGSNDSSIANDVKGPNDQVVGRNKGSNGSAQSGGWGNQGSGWSSGTGSGNKGSNDSNISNKGPNDQGGGWNKGSGGSAQSGAWGNQGSGWNGGTDSGNRGSNSDQPKSWNQSSVATDGGRSKDAGEGSSRGWGKTAGSSWEKGNDGSGKGGW
ccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
mciflslslvpfcggkdwmsaattsaegdrwnaggasagrsswpsfpvvgtslhaesnpanafgsgdngankdeedsawgskVNAIQNSSWGlaaaegknedcWNKAAVKNIesnngayggwgkedagsslqdsqdnwgknkdacdnqanwkksdswdkgkkiignstsswgdktaeknepdswgkgkdgssgsksdwnssalatenptvswgnasggwtqqkggnmdersgwkkddsgnqdqrsgwnkpktfgadvgsswnkqdgicssdvqdggsswakqdggsswgkknggslmgkqdggsswgkqdggsslgkqdggsswgkqdgrsslakqdggsswgkqdrgsswgkqdegsswskrdggsswgkqdggsslakqdggsswgkqdggsslgkqdggsswskqdggsswgkqdggsswgkqdggsswgkqdggsswskepdqqhrknggsswgnrdggsswskqtdqqdnqekplesdggrgsggrwgqgggqgggqevsdqygrgsfdqgsekgtggmgdqgngwnrrdkgtdwnkkcnwnsgssdgdgnngsggwgkksnwnsgssgageskdtdwnkksnlncgssdgdgnnssgwdkkgnwnagssgdgeskdtdwnkkcnwnsgsndgdgnngsgwgkksnwnsgsnvagesndsnwakkgnwnsgsddanqesswgkkqgnwnsgsrdghqesswgkksdwnsrsedqpepfnnrgsgnfrgrggfrgrgdsdrggfggrgrtnrggyggrgrfdregfggrggsdrggfggrgssdrggfggrgrgrrdqgggwnnndsgdyksfdssqgvknggewsrsndgagswsqgggtwksgnsgassqdggwssqgsgwnnsnttnevkglsdqgggwnkgaggsaqaggwgrqgsgwssgtstgnrgsndssiandvkgpndqvvgrnkgsngsaqsggwgnqgsgwssgtgsgnkgsndsnisnkgpndqgggwnkgsggsaqsgawgnqgsgwnggtdsgnrgsnsdqpkswnqssvatdggrskdagegssrgwgktagsswekgndgsgkggw
MCIFLSLSLVPFCGGKDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKEDAGSSLQDSQDNWGknkdacdnqanwkksdswdkgkkiignstsswgdktaeknepdswgkgkdgssgskSDWNSSALAtenptvswgnasggwtqqkggnMDERSGWKKddsgnqdqrsgwnkPKTFGADVGSSWNKQDGICSSDVQDGGSSWAKQDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSslgkqdggsswgkqdgrsslakqdggsswgkqdrgsswgkqdegsswskrdggsswgkqdggsslakqdggsswgkqdGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQDGgsswskepdqqhrknggsswgnrdGGSSWSKQTDQQDNQEKplesdggrgsggrWGQGGGQGGGQEVSDQYGRGSFDqgsekgtggmgdqgngwnrRDKGTDWNKKcnwnsgssdgdgnngsgGWGKKSNWNSGSSGAGESKDTDWNKKSNLNCGSSDGDGNNSSGWDKKGNWNAGSSGDGESKDTDWNKKCNWnsgsndgdgnngsGWGKKSNWNSGSNVAGESNDSNWAKKGNWNSGsddanqesswgkkqgnwnsgsrdghqesswgkksdwnsrsedqpepfnnrgsgnfrgrggfrgrgdsdrggfggrgrtnrggyggrgrfdregfggrggsdrggfggrgssdrggfggrgrgrrdqgggwnnndsgdyksFDSSQGVKNGGEWSRSNDGAGSWSQGGGTWKSGNSGASSQDGGWSSQGSGWNNSNTTNEVKGLSDQGGGWNKGAGGSAQAGGWGRQGSGWSSGTSTGNRGSNDSSIANDVKGPNDQVVGRNKgsngsaqsggwgnqGSGWSSGTGSGNKGSNDSNISNKGPNDQGGGWNKGSGGSAQSGAWGNQGSGWNGGTDSGNrgsnsdqpkswnqssvatdggrskdagegssrgwgktagsswekgndgsgkggw
MCIFLSLSLVPFCGGKDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKEDAGSSLQDSQDNWGKNKDACDNQANwkksdswdkgkkiiGNSTSSWGDKTAEKNEPdswgkgkdgssgsksdwnssALATENPTVSWGNASGGWTQQKGGNMDERSGWKKDDSGNQDQRSGWNKPKTFGADVGSSWNKQDGICSSDVQDGGSSWAKQDggsswgkknggsLMGKQDGGSSWGKQDGGSSLGKQDGGSSWGKQDGRSSLAKQDGGSSWGKQDRGSSWGKQDEGSSWSKRDGGSSWGKQDGGSSLAKQDGGSSWGKQDGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQDGGSSWSKEPDQQHRKNGGSSWGNRDGGSSWSKQTDQQDNQEKPLESDggrgsggrwgqgggqgggqEVSDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTDWNKKCnwnsgssdgdgnngsggwgkksnwnsgssgAGESKDTDWNKKsnlncgssdgdgnnssgWDKKGNWNAGSSGDGESKDTDWNKKCnwnsgsndgdgnngsgwgkksnwnsgsnVAGESNDSNWAKKGNWNSGSDDANQESSWGKKQGNWNSGSRDGHQESSWGKKSDWNSRSEDQPEPFnnrgsgnfrgrggfrgrgdsdrggfggrgrtnrggyggrgrfdregfggrggsdrggfggrgssdrggfggrgrgrrdqgggwnnndSGDYKSFDSSQGVKNGGEWSRSNDGAGSWSQGGGTWKSGNsgassqdggwssqgsgwnnsnttnEVKGLSDQgggwnkgaggsaqaggwgrqgsgwssgtstgnrgsndssIANDVKGPNDQVVGRNKgsngsaqsggwgnqgsgwssgtgsgnkgsndsnisnkgPNDQgggwnkgsggsaqsgawgnqgsgwnggTDSGNRGSNSDQPKSWNQSSVATDGGRSKDAGEGSSRGWGKTAGSSWEKGNDGSGKGGW
*CIFLSLSLVPFCGGKDWMSAAT**************************************************************I**SSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGW********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
*CIFLS*SLV************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
MCIFLSLSLVPFCGGKDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKE***************NKDACDNQANWKKSDSWDKGKKIIGNSTSS********************************LATENPTVSWGNASGGWTQ************************GWNKPKTFGADVGSSWNKQDGICSSD******************KKNGGSL****************************************************************************************************************************************************************************************************************SDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTDWNKKCNWNSGSSDGDGNNGSGGWGKKSNW*************DWNKKSNLNCGSSDGDGNNSSGWDKKGNWNA***********DWNKKCNWNSGSNDGDGNNGSGWGKKSNWNSGSNVAGESNDSNWAKKGNWNS***********************************************FNNRGSGNFRGRGGFRGRGDSDRGGFGGRGRTNRGGYGGRGRFDREGFGGRGGSDRGGFGGRGSSDRGGFGGRGRGRRDQGGGWNNNDSGDYKSF***********************************************SGWNNSNTTNEVKGLSDQGGGWN******************************NDSSIANDVKGPNDQVVGRN*******************************DSNISNKGPNDQGGGWNKGSGGSAQSGAWGNQGSGWNGGTDS********************************************************
MCIFLSLSLVPFCGGKD*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MCIFLSLSLVPFCGGKDWMSAATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWGSKVNAIQNSSWGLAAAEGKNEDCWNKAAVKNIESNNGAYGGWGKEDAGSSLQDSQDNWGKNKDACDNQANWKKSDSWDKGKKIIGNSTSSWGDKTAEKNEPDSWGKGKDGSSGSKSDWNSSALATENPTVSWGNASGGWTQQKGGNMDERSGWKKDDSGNQDQRSGWNKPKTFGADVGSSWNKQDGICSSDVQDGGSSWAKQDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSSLGKQDGGSSWGKQDGRSSLAKQDGGSSWGKQDRGSSWGKQDEGSSWSKRDGGSSWGKQDGGSSLAKQDGGSSWGKQDGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQDGGSSWSKEPDQQHRKNGGSSWGNRDGGSSWSKQTDQQDNQEKPLESDGGRGSGGRWGQGGGQGGGQEVSDQYGRGSFDQGSEKGTGGMGDQGNGWNRRDKGTDWNKKCNWNSGSSDGDGNNGSGGWGKKSNWNSGSSGAGESKDTDWNKKSNLNCGSSDGDGNNSSGWDKKGNWNAGSSGDGESKDTDWNKKCNWNSGSNDGDGNNGSGWGKKSNWNSGSNVAGESNDSNWAKKGNWNSGSDDANQESSWGKKQGNWNSGSRDGHQESSWGKKSDWNSRSEDQPEPFNNRGSGNFRGRGGFRGRGDSDRGGFGGRGRTNRGGYGGRGRFDREGFGGRGGSDRGGFGGRGSSDRGGFGGRGRGRRDQGGGWNNNDSGDYKSFDSSQGVKNGGEWSRSNDGAGSWSQGGGTWKSGNSGASSQDGGWSSQGSGWNNSNTTNEVKGLSDQGGGWNKGAGGSAQAGGWGRQGSGWSSGTSTGNRGSNDSSIANDVKGPNDQVVGRNKGSNGSAQSGGWGNQGSGWSSGTGSGNKGSNDSNISNKGPNDQGGGWNKGSGGSAQSGAWGNQGSGWNGGTDSGNRGSNSDQPKSWNQSSVATDGGRSKDAGEGSSRGWGKTAGSSWEKGNDGSGKGGW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1066 2.2.26 [Sep-21-2011]
P82003274 Prothoracicostatic peptid N/A no 0.119 0.463 0.405 3e-08
>sp|P82003|PTSP_BOMMO Prothoracicostatic peptide OS=Bombyx mori PE=1 SV=2 Back     alignment and function desciption
 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 91/175 (52%), Gaps = 48/175 (27%)

Query: 279 WAK---QDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSSLGKQDGGSSWGKQDGRSSLAK 335
           WAK   QD  S+WGK+        QD  S+WGK+      G QD  S+WGK+      A 
Sbjct: 52  WAKRAWQDMSSAWGKR------AWQDLNSAWGKR------GWQDLNSAWGKR------AW 93

Query: 336 QDGGSSWGK---QDRGSSWGKQDEGSSWSKR---DGGSSWGKQDGGSSLAKQDGGSSWGK 389
           QD  S+WGK   QD  S+WGK+D+  +  K+   D  S WGK+      A QD  S+WGK
Sbjct: 94  QDLNSAWGKRGWQDLNSAWGKRDDDEAMEKKSWQDLNSVWGKR------AWQDLNSAWGK 147

Query: 390 QDGGSSLGKQDGGSSWSKQ---DGGSSWGK---QDGGSSWGK---QDGGSSWGKQ 435
           +        QD  S+W K+   D  S WGK   QD  S+WGK   QD  S+WGK+
Sbjct: 148 R------AWQDLNSAWGKRGWNDISSVWGKRAWQDLNSAWGKRAWQDMSSAWGKR 196
Inhibits ecdysteroid biosynthesis in the prothoracic gland of fifth instar larvae, with maximum inhibition during the spinning stage. When administered to day 8 fifth instar larvae it produces a significant delay in the commencement spinning behavior.
Bombyx mori (taxid: 7091)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1066
156365737226 predicted protein [Nematostella vectensi 0.196 0.929 0.382 2e-28
156349300235 predicted protein [Nematostella vectensi 0.196 0.893 0.377 1e-27
297806403 1476 hypothetical protein ARALYDRAFT_487210 [ 0.188 0.136 0.447 4e-21
255586801 1547 suppressor of ty, putative [Ricinus comm 0.266 0.183 0.377 3e-20
374583946708 pseudouridine synthase Rsu [Leptonema il 0.199 0.300 0.302 4e-19
224109844 1697 predicted protein [Populus trichocarpa] 0.166 0.104 0.467 9e-18
15237667 1493 kow domain-containing transcription fact 0.333 0.237 0.380 2e-16
224100723 1853 hypothetical protein POPTRDRAFT_765239 [ 0.170 0.098 0.420 7e-16
50405439298 DEHA2A00484p [Debaryomyces hansenii CBS7 0.173 0.620 0.256 1e-09
156385476215 predicted protein [Nematostella vectensi 0.191 0.948 0.350 2e-09
>gi|156365737|ref|XP_001626800.1| predicted protein [Nematostella vectensis] gi|156213689|gb|EDO34700.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/212 (38%), Positives = 132/212 (62%), Gaps = 2/212 (0%)

Query: 260 SWNKQDGICSSDVQDGGSSWAKQDGGSSWGKKNGGSLMGKQDGGSSWGKQDGGSSLGKQD 319
           SW  +DGI S  ++DG +SWA +D  +SW  K+G +    +DG +SW  +DG +S   +D
Sbjct: 4   SWAIKDGIHSWAIKDGINSWAIKDVINSWAIKDGINSWAIKDGINSWAFKDGINSWAIKD 63

Query: 320 GGSSWGKQDGRSSLAKQDGGSSWGKQDRGSSWGKQDEGSSWSKRDGGSSWGKQDGGSSLA 379
           G +SW  +DG +S A + G +SW  +D  +SW  +D  + W+ +DG +SW  +DG +S A
Sbjct: 64  GINSWAIKDGINSWAIKYGINSWAIKDGINSWAIKDGINFWAIKDGINSWAIKDGINSWA 123

Query: 380 KQDGGSSWGKQDGGSSLGKQDGGSSWSKQDGGSSWGKQDGGSSWGKQDGGSSWGKQDGGS 439
            +DG +SW  +DG +S   +DG +SW+ +DG +SW  +DG +SW  +DG +SW  +DG +
Sbjct: 124 IKDGINSWAIKDGINSWAIKDGINSWAIKDGINSWAIKDGINSWAIKDGINSWAIKDGIN 183

Query: 440 SWSKE--PDQQHRKNGGSSWGNRDGGSSWSKQ 469
            W+ +   +    K+G +SW  +DG +SW+ +
Sbjct: 184 YWAIKDGINSWAIKDGINSWAIKDGINSWAIK 215

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota
>gi|156349300|ref|XP_001622001.1| predicted protein [Nematostella vectensis] gi|156208385|gb|EDO29901.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
>gi|297806403|ref|XP_002871085.1| hypothetical protein ARALYDRAFT_487210 [Arabidopsis lyrata subsp. lyrata] gi|297316922|gb|EFH47344.1| hypothetical protein ARALYDRAFT_487210 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255586801|ref|XP_002534015.1| suppressor of ty, putative [Ricinus communis] gi|223525980|gb|EEF28368.1| suppressor of ty, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|374583946|ref|ZP_09657038.1| pseudouridine synthase Rsu [Leptonema illini DSM 21528] gi|373872807|gb|EHQ04801.1| pseudouridine synthase Rsu [Leptonema illini DSM 21528] Back     alignment and taxonomy information
>gi|224109844|ref|XP_002315331.1| predicted protein [Populus trichocarpa] gi|222864371|gb|EEF01502.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15237667|ref|NP_196049.1| kow domain-containing transcription factor 1 [Arabidopsis thaliana] gi|332003341|gb|AED90724.1| kow domain-containing transcription factor 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224100723|ref|XP_002311988.1| hypothetical protein POPTRDRAFT_765239 [Populus trichocarpa] gi|222851808|gb|EEE89355.1| hypothetical protein POPTRDRAFT_765239 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|50405439|ref|XP_456355.1| DEHA2A00484p [Debaryomyces hansenii CBS767] gi|49652019|emb|CAG84300.1| DEHA2A00484p [Debaryomyces hansenii CBS767] Back     alignment and taxonomy information
>gi|156385476|ref|XP_001633656.1| predicted protein [Nematostella vectensis] gi|156220729|gb|EDO41593.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1066
TAIR|locus:21799791493 KTF1 "AT5G04290" [Arabidopsis 0.452 0.322 0.340 1.8e-66
DICTYBASE|DDB_G02899011143 DDB_G0289901 "unknown" [Dictyo 0.403 0.376 0.247 9.1e-24
UNIPROTKB|P82003274 P82003 "Prothoracicostatic pep 0.125 0.489 0.412 9.2e-19
FB|FBgn0029518193 CG13376 [Drosophila melanogast 0.108 0.601 0.335 9.4e-19
DICTYBASE|DDB_G02906851081 DDB_G0290685 "unknown" [Dictyo 0.442 0.436 0.247 1.1e-18
UNIPROTKB|Q9Y871536 ESTA "Feruloyl esterase B" [Pi 0.192 0.382 0.334 1.4e-17
UNIPROTKB|Q9NZW41301 DSPP "Dentin sialophosphoprote 0.650 0.532 0.159 2.5e-17
MGI|MGI:96696743 Krt9 "keratin 9" [Mus musculus 0.227 0.327 0.328 1.4e-16
FB|FBgn0038492 2112 Mur89F "Mucin related 89F" [Dr 0.418 0.211 0.225 5.9e-14
TAIR|locus:22063301647 GTB1 "global transcription fac 0.136 0.088 0.363 1.2e-15
TAIR|locus:2179979 KTF1 "AT5G04290" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 610 (219.8 bits), Expect = 1.8e-66, Sum P(3) = 1.8e-66
 Identities = 196/576 (34%), Positives = 245/576 (42%)

Query:    21 AATTSAEGDRWNAGGASAGRSSWPSFPVVGTSLHAESNPANAFGSGDNGANKDEEDSAWG 80
             A T S  GD  +A    A  SSW       TS  A+       G G +G NK +EDS WG
Sbjct:   783 AGTVSGWGDT-SASNVEA--SSWEK-QGASTSNVADLGSWGTHG-GSSGGNKQDEDSVWG 837

Query:    81 SKVNAIQNS------SWGLAAAEGKNEDCW-NKAAVKNIESNNGAYGGWGKEDAGSSLQD 133
                 A ++S      SWG        E  W NK    +    +G    WG++D GS   +
Sbjct:   838 KLCEASESSQKKEESSWGKKGGSD-GESSWGNKDGNSSASKKDGV--SWGQQDKGSD--E 892

Query:   134 SQDNWGKNKDACDNQANXXXXXXXXXXXXXXGNSTSSWGDKTAEKNEPXXXXXXXXXXXX 193
             S     K   A  NQ                  S     D  A                 
Sbjct:   893 S-----KGGSAWSNQCGDFGSGKKKDGSSGWNKSAE---DSNANSKGVPDWGQPNDGSSW 944

Query:   194 XXXXXXXXALATENPTVSWGNASGGWTQQKGGNMDERSGWKKDDSGNQ-----DQRSGWN 248
                     +   ++   SWG    G     G +  ++   +KDD G+      D  S W 
Sbjct:   945 GKKGDGAASWGKKDDGGSWGKKDDGNKDDGGSSWGKKDDGQKDDGGSSWEKKFDGGSSWG 1004

Query:   249 KPKTFGADVGSSWNKQD--GICSSDVQDGGSSWAKQDXXXXXXXXXXXXLMGKQDGGSSW 306
             K      D GSSW K+D  G       DGGSSW K+D               K DG SSW
Sbjct:  1005 KKD----DGGSSWGKKDDGGSLWGKKDDGGSSWGKEDDGGSLWGK-------KDDGESSW 1053

Query:   307 GKQDGG-SSLGKQD-GGSSWGKQD------------GRSSLAKQDGGSSWGKQD--RGSS 350
             GK+D G SS GK+D GGSSWGK+D            GR    ++ GG   G+    RGSS
Sbjct:  1054 GKKDDGESSWGKKDDGGSSWGKKDEGGYSEQTFDRGGRGFGGRRGGGRRGGRDQFGRGSS 1113

Query:   351 WGKQDEGSSWSKRDGGSSWGKQDGGSSLAKQDGGSSWGKQD---GGSSLGKQDGG--SSW 405
             +G  ++ + WSK  GGSSWGKQDG        GGSSWGK++   GGSS GKQD G  SSW
Sbjct:  1114 FGNSEDPAPWSKPSGGSSWGKQDGDG------GGSSWGKENDAGGGSSWGKQDNGVGSSW 1167

Query:   406 SKQD----GGSSWGKQD---GGSSWGKQDGG---SSWGKQDGGSSWSKEPDQQHRKNGGS 455
              KQ+    GGSSWGKQ+   GGSSWGKQD G   SSWGKQDGG        +Q+  +GGS
Sbjct:  1168 GKQNDGSGGGSSWGKQNDAGGGSSWGKQDSGGDGSSWGKQDGGGDSGSAWGKQNNTSGGS 1227

Query:   456 SWGNRD---GGSSWSKQTDQQDNQE--KPLESDXXXXXXXXXXXXXXXXXXXEVSDQYGR 510
             SWG +    GGSSW KQ          K                        + +D  G 
Sbjct:  1228 SWGKQSDAGGGSSWGKQDGGGGGSSWGKQDGGGGSGSAWGKQNETSNGSSWGKQNDSGGG 1287

Query:   511 GSFDQGSEKGTGGMGDQGNGWNRRDKG---TDWNKK 543
              S+  G + G GG    G+ W +++ G   + W K+
Sbjct:  1288 SSW--GKQDGGGG----GSSWGKQNDGGGGSSWGKQ 1317
GO:0000166 "nucleotide binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006306 "DNA methylation" evidence=IMP
GO:0030422 "production of siRNA involved in RNA interference" evidence=IMP
DICTYBASE|DDB_G0289901 DDB_G0289901 "unknown" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P82003 P82003 "Prothoracicostatic peptide" [Bombyx mori (taxid:7091)] Back     alignment and assigned GO terms
FB|FBgn0029518 CG13376 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290685 DDB_G0290685 "unknown" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y871 ESTA "Feruloyl esterase B" [Piromyces equi (taxid:99929)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NZW4 DSPP "Dentin sialophosphoprotein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:96696 Krt9 "keratin 9" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0038492 Mur89F "Mucin related 89F" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2206330 GTB1 "global transcription factor group B1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1066
PRK12678 672 PRK12678, PRK12678, transcription termination fact 4e-06
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 5e-06
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 1e-05
PRK12678 672 PRK12678, PRK12678, transcription termination fact 6e-05
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 3e-04
PRK12678 672 PRK12678, PRK12678, transcription termination fact 6e-04
PRK12678 672 PRK12678, PRK12678, transcription termination fact 0.001
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 0.001
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information 
 Score = 50.3 bits (121), Expect = 4e-06
 Identities = 33/140 (23%), Positives = 50/140 (35%), Gaps = 13/140 (9%)

Query: 674 NSGSDDANQESSWGKKQGNWNSGSRDGHQESSWGKKSDWNSRSEDQPEPFNNRGSGNFRG 733
            + + +  +E    +++   +   R    E     + +   R  D  +  + R  G+ R 
Sbjct: 157 RADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRRE 216

Query: 734 RGGFRGRGDSDRGGFGGRGRTNRGGYGGRGRFDREGFGGRGGSDRGGFGGRGSSDRGGFG 793
                 RG  D G   GR R  R     RG  +RE  G R G D  G GGR        G
Sbjct: 217 E-----RGRRDGGDRRGRRR-RRDRRDARGDDNREDRGDRDGDDGEGRGGRR-------G 263

Query: 794 GRGRGRRDQGGGWNNNDSGD 813
            R R R  +G    +  +  
Sbjct: 264 RRFRDRDRRGRRGGDGGNER 283

Length = 672
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1066
PLN03134144 glycine-rich RNA-binding protein 4; Provisional 96.69
KOG09211282 consensus Dosage compensation complex, subunit MLE 96.47
TIGR01659346 sex-lethal sex-lethal family splicing factor. This 95.54
KOG3973465 consensus Uncharacterized conserved glycine-rich p 95.49
KOG3262215 consensus H/ACA small nucleolar RNP component GAR1 94.81
TIGR01661352 ELAV_HUD_SF ELAV/HuD family splicing factor. These 94.01
KOG3262215 consensus H/ACA small nucleolar RNP component GAR1 93.02
PTZ00146293 fibrillarin; Provisional 92.3
KOG0122270 consensus Translation initiation factor 3, subunit 88.72
KOG4210285 consensus Nuclear localization sequence binding pr 88.7
TIGR01661352 ELAV_HUD_SF ELAV/HuD family splicing factor. These 88.38
TIGR01659346 sex-lethal sex-lethal family splicing factor. This 88.31
PLN03213 759 repressor of silencing 3; Provisional 87.3
COG0724306 RNA-binding proteins (RRM domain) [General functio 85.26
TIGR01645 612 half-pint poly-U binding splicing factor, half-pin 84.25
KOG0116419 consensus RasGAP SH3 binding protein rasputin, con 84.14
TIGR01628 562 PABP-1234 polyadenylate binding protein, human typ 83.24
PLN03120260 nucleic acid binding protein; Provisional 83.09
KOG0108435 consensus mRNA cleavage and polyadenylation factor 82.69
TIGR01645612 half-pint poly-U binding splicing factor, half-pin 81.81
TIGR01622457 SF-CC1 splicing factor, CC1-like family. A homolog 81.73
>PLN03134 glycine-rich RNA-binding protein 4; Provisional Back     alignment and domain information 
Probab=96.69  E-value=0.0014  Score=63.05  Aligned_cols=42  Identities=10%  Similarity=-0.044  Sum_probs=39.6

Q ss_pred             CCCCCCccccccc--cccCCceeeecCCCCCCCCCCCCCCCCCC
Q 001496          675 SGSDDANQESSWG--KKQGNWNSGSRDGHQESSWGKKSDWNSRS  716 (1066)
Q Consensus       675 SLSFDANEDSVWe--se~GSw~SVRIPTDpESG~pKGFGYV~~~  716 (1066)
                      -|+++++|+.|.+  ++||.|..|+|+.|++|+..|+|+||++.
T Consensus        41 nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~   84 (144)
T PLN03134         41 GLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN   84 (144)
T ss_pred             CCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEEC
Confidence            4889999999999  89999999999999999999999999875

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>TIGR01659 sex-lethal sex-lethal family splicing factor Back     alignment and domain information
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown] Back     alignment and domain information
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor Back     alignment and domain information
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00146 fibrillarin; Provisional Back     alignment and domain information
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription] Back     alignment and domain information
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor Back     alignment and domain information
>TIGR01659 sex-lethal sex-lethal family splicing factor Back     alignment and domain information
>PLN03213 repressor of silencing 3; Provisional Back     alignment and domain information
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only] Back     alignment and domain information
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family Back     alignment and domain information
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>PLN03120 nucleic acid binding protein; Provisional Back     alignment and domain information
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification] Back     alignment and domain information
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family Back     alignment and domain information
>TIGR01622 SF-CC1 splicing factor, CC1-like family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1066
d1x0fa175 Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s 97.65
d1uawa_77 Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} 97.63
d2cq4a1101 RNA binding protein 23 {Human (Homo sapiens) [TaxI 97.61
d2cqga190 TAR DNA-binding protein 43, TDP-43 {Human (Homo sa 97.46
d1x4ba1103 Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu 97.46
d1whwa_99 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 97.39
d2cqda1103 RNA-binding region containing protein 1 {Human (Ho 97.35
d1hd0a_75 Heterogeneous nuclear ribonucleoprotein d0 {Human 97.32
d2cqba189 Peptidyl-prolyl cis-trans isomerase E, N-terminal 97.3
d1l3ka184 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 97.14
d1x5ua193 Splicing factor 3B subunit 4 {Human (Homo sapiens) 96.94
d1fxla285 Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 96.93
d2cpha194 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 96.9
d1cvja180 Poly(A)-binding protein {Human (Homo sapiens) [Tax 96.9
d2u2fa_85 Splicing factor U2AF 65 KDa subunit {Human (Homo s 96.89
d1rk8a_88 RNA-binding protein 8 {Fruit fly (Drosophila melan 96.82
d1b7fa285 Sex-lethal protein {Drosophila melanogaster [TaxId 96.8
d1p1ta_104 Cleavage stimulation factor, 64 kda subunit {Human 96.78
d2cqca183 Arginine/serine-rich splicing factor 10 {Human (Ho 96.77
d2cq0a190 Eukaryotic translation initiation factor 3 subunit 96.76
d1h2vz_93 CBP20, 20KDa nuclear cap-binding protein {Human (H 96.61
d1u6fa1139 RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId 96.58
d1b7fa182 Sex-lethal protein {Drosophila melanogaster [TaxId 96.44
d1x5ta183 Splicing factor 3B subunit 4 {Human (Homo sapiens) 96.44
d2cpza1102 CUG triplet repeat RNA-binding protein 1 {Human (H 96.43
d1x4ha198 RNA-binding protein 28 {Mouse (Mus musculus) [TaxI 96.34
d2msta_75 Neural RNA-binding protein Musashi-1 {Mouse (Mus m 96.24
d1x4ea172 RNA-binding motif, single-stranded-interacting pro 96.09
d1fxla182 Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 96.0
d2ghpa386 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 95.88
d1no8a_78 Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1 95.84
d1x5sa190 Cold-inducible RNA-binding protein {Human (Homo sa 95.66
d1l3ka279 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 95.54
d1zh5a285 Lupus LA protein {Human (Homo sapiens) [TaxId: 960 95.48
d2f9da1114 Pre-mRNA branch site protein p14 {Human (Homo sapi 95.47
d1u1qa_183 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 95.33
d2cpfa185 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 95.29
d1wg5a_104 Heterogeneous nuclear ribonucleoprotein H' {Human 95.28
d1wi8a_104 Eukaryotic translation initiation factor 4B {Human 94.9
d1weza_102 Heterogeneous nuclear ribonucleoprotein H' {Human 94.84
d2cpya1103 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 94.62
d1cvja289 Poly(A)-binding protein {Human (Homo sapiens) [Tax 94.59
d2cqia190 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 94.48
d2cpea1101 RNA-binding protein EWS {Human (Homo sapiens) [Tax 94.41
d2cpia189 E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc 93.9
d2ghpa181 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 93.85
d2cq3a193 RNA-binding protein 9 {Human (Homo sapiens) [TaxId 93.8
d1wf0a_88 TAR DNA-binding protein 43, TDP-43 {Human (Homo sa 93.69
d1wela1112 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 93.48
d1u1qa_183 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 93.41
d1fjeb191 Nucleolin {Golden hamster (Mesocricetus auratus) [ 93.25
d2disa196 Hypothetical protein FLJ20273 {Human (Homo sapiens 92.87
d2ghpa275 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 92.42
d1x5oa1101 RNA-binding motif, single-stranded-interacting pro 92.19
d2cpxa1102 RNA-binding protein 41, RBM41 {Human (Homo sapiens 91.9
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_104 U2 90.86
d1owxa_113 Lupus LA protein {Human (Homo sapiens) [TaxId: 960 90.77
d2cqpa186 RNA-binding protein 12 {Mouse (Mus musculus) [TaxI 89.8
d1x4ga196 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 89.56
d1whxa_111 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 88.06
d3begb187 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 87.55
d1u2fa_90 Splicing factor U2AF 65 KDa subunit {Human (Homo s 85.49
d2adba1108 Polypyrimidine tract-binding protein {Human (Homo 84.26
d2cpja186 Non-POU domain-containing octamer-binding protein, 82.55
d1x4aa195 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 82.07
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=3.6e-06  Score=45.57  Aligned_cols=43  Identities=14%  Similarity=-0.042  Sum_probs=39.7

Q ss_pred             CCCCCCCCCCCCC--CCCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             8988876445346--556873012068998888888888777899
Q 001496          675 SGSDDANQESSWG--KKQGNWNSGSRDGHQESSWGKKSDWNSRSE  717 (1066)
Q Consensus       675 SLSFDANEDSVWe--se~GSI~SVRIPTDqESG~pKGFGYV~~~e  717 (1066)
                      -|+++++++.+.+  ++||.|..|+||.|++|+.+|||+||.+..
T Consensus         6 nLp~~~te~~l~~~F~~~G~I~~v~i~~d~~t~~~rG~~FV~f~~   50 (75)
T d1x0fa1           6 GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKE   50 (75)
T ss_dssp             SCCSSCCHHHHHHHHHHHSCEEEEECCCCTTTCCTTCCEEEEESS
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf             899989899999999985876521224465545665289999788
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Back     information, alignment and structure
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure