Citrus Sinensis ID: 001497

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------
Protein Sequence
MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Secondary Structure (PSIPRED)
cEEccccccccccHHHHHccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHcccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccccccccccccccccccEEEccccccccccccHHHHHcccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccEEccccccccccccccEEEccccccEEEccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccEEccccccccccccEEEccccEEEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEcccccccccccccccEEEccccEEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEccccccEEEcccccccccccEEEccccccEEcccHHHHcccccccEEEcccccccccccHHHHHcccccEEEccccccEEcccccccccccccEEEcccccccccccHHHHcccccHHcccccccccccccccccccccccccccEEEEEEEEEccEEEEEccHHHcccEEEEccccccccccHHHHHccccccccccccccccccccccccccccccEEccccccccccccHHHHcccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEHHHHHHHHEEEHHHHcccHHHHHHHHHHHHHHcEEEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHcccccEEEEccccccccccHHHHcccccccEEEcccccccccccHHHHHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccccEEEccccccccccccHHHcccccccEEEEccccccccccccHHHcccccccEEEEccccccccccccHHHcccccccEEEEccccccccccHHHHHHcccccEEEcccccccccccHHHHHccccccEEEEccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEEccccccccccHHHHccccccEEEEEccccccccccHHHcccccccEEEEEccccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccEEEEEcccccccccccHHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccccccccEEEEcccccccccccHHHHHHcEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEccccccccccccHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mldlsgnafnnNVLSSLARLSSLRSlylsdnrlegsidvkeldslrdleeldiggnkiDKFMVSKGLSKlkslglsgtgfkgtfdvrefdsfnnlevldmsgneidnlvvpqglERLSRLsklkkldlrgnlcnnsILSSVARLSSLTSLHLSHnilqgsidakefdslsnleeldindneidnvevsrgyrglrklksldlsgvgirdGNKLlqsmgsfpslntlhlesnnftaTLTTTQelhnftnleyltlddsSLHISLLQSIGsifpslknlsmsgcevngvlsgqgfphfksleHLDMRFARIALNTSFLQIIGEsmpslkylslsgstlgtnssrildqglcplahlqelyidnndlrgslpwclanttslrILDVSfnqltgsisssplvhltsieelrlsnnhfripvsleplfnhsklkifdaknneingeineshsltpkfqlkslslssnygdsvtfpkflyhqHELKEAELSHIKMIGefpnwllenntkLEFLYLVNdslagpfrlpihshkrlrfldvsnnnfqghipveigdilpSLVYFNIsmnaldgsipssfgnVIFLQFLDlsnnkltgeipdhLAMCCVNLEFLSlsnnslkghiFSRIFSLRNLRWLLLEgnhfvgeipqslskcsslkglylnnnnlsgkiprwlgnlkglqhivmpknhlegpipvefcrldslqildisdnnisgslpscfyplsikqVHLSKNmlhgqlkegtffncsslvtldlsynylngsipdwidgLSQLSHLNLAHNNLEGEVPIQLCRlnqlqlldlsdnnlhglipscfdnttlhesynnnsspdkpfktsfsisgpqgsvEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDlscnklvghippqignltRIQTLNlshnnltgtipltfsnlrhIESLDLSynklsgkiprqlvDLNTLAIFIVAYNnlsgkipewTAQFATfnkssydgnpflcglplpicrslatmseastsnegddnlidmdsFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVidnliptrfch
Flexible Loop (DISEMBL)
MLDLSGNAFNNNVLSSLARLSSLRSLYlsdnrlegsidvkeldslrdleeldiggnkidKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLeeldindneidnvevsrgyrglrklksldlsgvGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Low Complexity Region (SEG)
MLDLSGNAFNNNVlsslarlsslrslylsDNRLEGSIDVKeldslrdleeldIGGNKIDKFMVskglsklkslglsgtgfkgtfDVREFDSFNNLEVLDMSGNEIDNLVVPQGlerlsrlsklkkldlrGNLCNNSILSSVARlssltslhlshNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPslkylslsgstlgtnssRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVnleflslsnnslKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIqlcrlnqlqlldlsdnnlHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Disordered region (IsUnstruct)
****************LARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI******************LSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL***************************EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLAT************NLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFC*
Disordered Region (DISOPRED)
MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN**SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCG****************************DSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Disordered Region (DISEMBL)
MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Disordered Region (DISPRO)
MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIP*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1066	2.2.26 [Sep-21-2011]
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.686	0.584	0.274	7e-68
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.769	0.656	0.281	2e-66
Q9LJF3	1164	Receptor-like protein kin	no	no	0.601	0.550	0.315	7e-61
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.5	0.466	0.330	8e-61
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.644	0.623	0.319	1e-60
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.621	0.568	0.292	2e-60
Q9C9H7	847	Receptor-like protein 12	no	no	0.614	0.773	0.303	1e-59
Q9FL28	1173	LRR receptor-like serine/	no	no	0.533	0.485	0.318	1e-59
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.602	0.536	0.306	9e-58
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.629	0.590	0.295	1e-56

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  259 bits (663), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 255/929 (27%), Positives = 402/929 (43%), Gaps = 197/929 (21%)

Query: 193  GLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTT------------ 240
            G R++  L+LSG+G+     +  S+G F +L  + L SN     + TT            
Sbjct: 69   GGREIIGLNLSGLGLT--GSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLH 126

Query: 241  -----------QELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLS 289
                        +L +  NL+ L L D+ L+ ++ ++ G++  +L+ L+++ C + G++ 
Sbjct: 127  LFSNLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLV-NLQMLALASCRLTGLIP 185

Query: 290  GQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLC 349
                           RF R                                         
Sbjct: 186  S--------------RFGR----------------------------------------- 190

Query: 350  PLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 409
             L  LQ L + +N+L G +P  + N TSL +   +FN+L GS+ +  L  L +++ L L 
Sbjct: 191  -LVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAE-LNRLKNLQTLNLG 248

Query: 410  NNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 467
            +N F   IP  L  L +   L +     N++ G I     LT    L++L LSSN    V
Sbjct: 249  DNSFSGEIPSQLGDLVSIQYLNLI---GNQLQGLI--PKRLTELANLQTLDLSSNNLTGV 303

Query: 468  TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 527
               +F +  ++L+   L+  ++ G  P  +  NNT L+ L+L    L+G     I + + 
Sbjct: 304  IHEEF-WRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQS 362

Query: 528  LRFLDVSNNNFQGHIP------VEIGDI-----------------LPSLVYFNISMNALD 564
            L+ LD+SNN   G IP      VE+ ++                 L +L  F +  N L+
Sbjct: 363  LKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLE 422

Query: 565  GSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR 624
            G +P   G +  L+ + L  N+ +GE+P  +  C   L+ +    N L G I S I  L+
Sbjct: 423  GKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNC-TRLQEIDWYGNRLSGEIPSSIGRLK 481

Query: 625  NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG--------------- 669
            +L  L L  N  VG IP SL  C  +  + L +N LSG IP   G               
Sbjct: 482  DLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSL 541

Query: 670  ---------NLKGLQHI----------VMP-------------KNHLEGPIPVEFCRLDS 697
                     NLK L  I          + P             +N  EG IP+E  +  +
Sbjct: 542  QGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTN 601

Query: 698  LQILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 756
            L  L +  N  +G +P  F  +S +  + +S+N L G +       C  L  +DL+ NYL
Sbjct: 602  LDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGL-CKKLTHIDLNNNYL 660

Query: 757  NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 816
            +G IP W+  L  L  L L+ N   G +P ++  L  +  L L  N+L+G IP    N  
Sbjct: 661  SGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQ 720

Query: 817  LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 876
               + N   +          +SGP  S   K+ ++FE                    L L
Sbjct: 721  ALNALNLEEN---------QLSGPLPSTIGKLSKLFE--------------------LRL 751

Query: 877  SCNKLVGHIPPQIGNLTRIQT-LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 935
            S N L G IP +IG L  +Q+ L+LS+NN TG IP T S L  +ESLDLS+N+L G++P 
Sbjct: 752  SRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPG 811

Query: 936  QLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEA 995
            Q+ D+ +L    ++YNNL GK+ +   QF+ +   ++ GN  LCG PL  C    + ++ 
Sbjct: 812  QIGDMKSLGYLNLSYNNLEGKLKK---QFSRWQADAFVGNAGLCGSPLSHCNRAGSKNQR 868

Query: 996  STSNEGDDNLIDMDSFFITFTISYVIVIF 1024
            S S +    +  + S      +  VI++F
Sbjct: 869  SLSPKTVVIISAISSLAAIALMVLVIILF 897

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  254 bits (650), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 278/987 (28%), Positives = 443/987 (44%), Gaps = 167/987 (16%)

Query: 66   GLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKK 125
            GL ++ +L L+G G  G+     F  F+NL  LD+S N   NLV P              
Sbjct: 69   GLFRVIALNLTGLGLTGSISPW-FGRFDNLIHLDLSSN---NLVGP-------------- 110

Query: 126  LDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNV 185
                       I ++++ L+SL SL L  N L G I + +  SL N+  L I DNE+   
Sbjct: 111  -----------IPTALSNLTSLESLFLFSNQLTGEIPS-QLGSLVNIRSLRIGDNEL--- 155

Query: 186  EVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHN 245
                               VG      + +++G+  +L  L L S   T  + +  +L  
Sbjct: 156  -------------------VG-----DIPETLGNLVNLQMLALASCRLTGPIPS--QLGR 189

Query: 246  FTNLEYLTLDDSSLHISLLQSIG-----SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLE 300
               ++ L L D+ L   +   +G     ++F + +N+      +NG +  +       LE
Sbjct: 190  LVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENM------LNGTIPAE----LGRLE 239

Query: 301  HLD-MRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 359
            +L+ +  A  +L       +GE M  L+YLSL  + L      ++ + L  L +LQ L +
Sbjct: 240  NLEILNLANNSLTGEIPSQLGE-MSQLQYLSLMANQL----QGLIPKSLADLGNLQTLDL 294

Query: 360  DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF--RIPV 417
              N+L G +P    N + L  L ++ N L+GS+  S   + T++E+L LS       IPV
Sbjct: 295  SANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPV 354

Query: 418  SLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQH 477
             L        LK  D  NN + G I E+  L    +L  L L +N  +    P  + +  
Sbjct: 355  ELSKC---QSLKQLDLSNNSLAGSIPEA--LFELVELTDLYLHNNTLEGTLSPS-ISNLT 408

Query: 478  ELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNN 537
             L+   L H  + G+ P  +     KLE L+L  +  +G     I +   L+ +D+  N+
Sbjct: 409  NLQWLVLYHNNLEGKLPKEI-SALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNH 467

Query: 538  FQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAM 597
            F+G IP  IG  L  L   ++  N L G +P+S GN   L  LDL++N+L+G IP     
Sbjct: 468  FEGEIPPSIGR-LKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGF 526

Query: 598  CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN 657
                LE L L NNSL+G++   + SLRNL  + L  N   G I   L   SS     + N
Sbjct: 527  L-KGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTI-HPLCGSSSYLSFDVTN 584

Query: 658  NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY 717
            N    +IP  LGN + L  + + KN L G IP    ++  L +LD+S N ++G++P    
Sbjct: 585  NGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIP---- 640

Query: 718  PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH 777
                 Q+ L K + H                +DL+ N+L+G IP W+  LSQL  L L+ 
Sbjct: 641  ----LQLVLCKKLTH----------------IDLNNNFLSGPIPPWLGKLSQLGELKLSS 680

Query: 778  NNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSI 837
            N     +P +L    +L +L L  N+L+G IP    N       N +       K  FS 
Sbjct: 681  NQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLD-------KNQFSG 733

Query: 838  SGPQGSVEKKILEIFEFTTKNIAYAYQ-----GRVLSLLAGLDLSCNKLVGHIPPQIGNL 892
            S PQ     K+ +++E      +   +     G++  L + LDLS N   G IP  IG L
Sbjct: 734  SLPQAM--GKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTL 791

Query: 893  TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 952
            ++++TL+LSHN LTG +P +  +++ +  L++S+N L GK+ +                 
Sbjct: 792  SKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKK----------------- 834

Query: 953  LSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFF 1012
                      QF+ +   S+ GN  LCG PL  C  +     ++   +G    +   S  
Sbjct: 835  ----------QFSRWPADSFLGNTGLCGSPLSRCNRV----RSNNKQQG----LSARSVV 876

Query: 1013 ITFTISYVIVIFGIVVVLYVNPYWRRR 1039
            I   IS +  I  +++V+ +  ++++R
Sbjct: 877  IISAISALTAIGLMILVIAL--FFKQR 901

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  236 bits (602), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 219/694 (31%), Positives = 325/694 (46%), Gaps = 53/694 (7%)

Query: 375  TTSLRILDVSF--NQLTGSISSSPLVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLKI 430
            +T L ++ V+F  N+L G + SSP      I  + LSNN F   IP +    F +S LK 
Sbjct: 147  STCLNLVSVNFSHNKLAGKLKSSPSASNKRITTVDLSNNRFSDEIPETFIADFPNS-LKH 205

Query: 431  FDAKNNEINGEINE-SHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKM 489
             D   N + G+ +  S  L     + SLS +S  GD   FP  L +   L+   LS   +
Sbjct: 206  LDLSGNNVTGDFSRLSFGLCENLTVFSLSQNSISGDR--FPVSLSNCKLLETLNLSRNSL 263

Query: 490  IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 549
            IG+ P                 D   G F       + LR L +++N + G IP E+  +
Sbjct: 264  IGKIPG----------------DDYWGNF-------QNLRQLSLAHNLYSGEIPPELSLL 300

Query: 550  LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 609
              +L   ++S N+L G +P SF +   LQ L+L NNKL+G+    +      +  L L  
Sbjct: 301  CRTLEVLDLSGNSLTGQLPQSFTSCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLPF 360

Query: 610  NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ---SLSKCSSLKGLYLNNNNLSGKIPR 666
            N++ G +   + +  NLR L L  N F GE+P    SL   S L+ L + NN LSG +P 
Sbjct: 361  NNISGSVPISLTNCSNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPV 420

Query: 667  WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS--CFYPLSIKQV 724
             LG  K L+ I +  N L G IP E   L  L  L +  NN++G +P   C    +++ +
Sbjct: 421  ELGKCKSLKTIDLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETL 480

Query: 725  HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 784
             L+ N+L G L E +   C++++ + LS N L G IP  I  L +L+ L L +N+L G +
Sbjct: 481  ILNNNLLTGSLPE-SISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNI 539

Query: 785  PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPF---KTSFSISGPQ 841
            P +L     L  LDL+ NNL G +P    +        + S     F   +      G  
Sbjct: 540  PSELGNCKNLIWLDLNSNNLTGNLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAG 599

Query: 842  GSVE-----KKILEIFEFT-TKNIAYAYQGRVLSLLAG------LDLSCNKLVGHIPPQI 889
            G VE      + LE F    +      Y G  + + +       LDLS N + G IP   
Sbjct: 600  GLVEFEGIRAERLEHFPMVHSCPKTRIYSGMTMYMFSSNGSMIYLDLSYNAVSGSIPLGY 659

Query: 890  GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 949
            G +  +Q LNL HN LTGTIP +F  L+ I  LDLS+N L G +P  L  L+ L+   V+
Sbjct: 660  GAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVS 719

Query: 950  YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMD 1009
             NNL+G IP +  Q  TF  + Y  N  LCG+PLP C S +  + +    +       M 
Sbjct: 720  NNNLTGPIP-FGGQLTTFPLTRYANNSGLCGVPLPPCSSGSRPTRSHAHPKKQSIATGMS 778

Query: 1010 SFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYL 1043
            +  +   +  V++I  +     V    ++R  Y+
Sbjct: 779  AGIVFSFMCIVMLIMALYRARKVQKKEKQREKYI 812

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  236 bits (602), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 184/557 (33%), Positives = 271/557 (48%), Gaps = 24/557 (4%)

Query: 498  LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 557
            L N T L+ L L  ++  G         K L+ LD+S+N   G IP EIGD   SL    
Sbjct: 224  LINCTNLKSLNLSYNNFDGQIPKSFGELKLLQSLDLSHNRLTGWIPPEIGDTCRSLQNLR 283

Query: 558  ISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF 617
            +S N   G IP S  +  +LQ LDLSNN ++G  P+ +     +L+ L LSNN + G   
Sbjct: 284  LSYNNFTGVIPESLSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQILLLSNNLISGDFP 343

Query: 618  SRIFSLRNLRWLLLEGNHFVGEIPQSLSK-CSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 676
            + I + ++LR      N F G IP  L    +SL+ L L +N ++G+IP  +     L+ 
Sbjct: 344  TSISACKSLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRT 403

Query: 677  IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQL 735
            I +  N+L G IP E   L  L+      NNI+G +P     L  +K + L+ N L G++
Sbjct: 404  IDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEI 463

Query: 736  KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQ 795
                FFNCS++  +  + N L G +P     LS+L+ L L +NN  GE+P +L +   L 
Sbjct: 464  PP-EFFNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPELGKCTTLV 522

Query: 796  LLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPF---KTSFSISGPQGSVE------K 846
             LDL+ N+L G IP         ++ +   S +          S  G  G VE      +
Sbjct: 523  WLDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPE 582

Query: 847  KILEIFEFTTKNIAYAYQGRVLSLLAG------LDLSCNKLVGHIPPQIGNLTRIQTLNL 900
            ++L+I    + +    Y G +LSL         LDLS N+L G IP +IG +  +Q L L
Sbjct: 583  RLLQIPSLKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLEL 642

Query: 901  SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 960
            SHN L+G IP T   L+++   D S N+L G+IP    +L+ L    ++ N L+G IP+ 
Sbjct: 643  SHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQ- 701

Query: 961  TAQFATFNKSSYDGNPFLCGLPLPICRS-----LATMSEASTSNEGDDNLIDMDSFFITF 1015
              Q +T   + Y  NP LCG+PLP C++      A   E   +  G       +S  +  
Sbjct: 702  RGQLSTLPATQYANNPGLCGVPLPECKNGNNQLPAGTEEGKRAKHGTRAASWANSIVLGV 761

Query: 1016 TISYVIVIFGIVVVLYV 1032
             IS   V   IV  + V
Sbjct: 762  LISAASVCILIVWAIAV 778

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  235 bits (600), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 236/738 (31%), Positives = 346/738 (46%), Gaps = 51/738 (6%)

Query: 337  GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 396
            G N S  L   +C L  L++L +  N + G +P  L+   SL +LD+  N+  G I    
Sbjct: 76   GMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQ- 134

Query: 397  LVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQL 454
            L  + ++++L L  N+    IP  +  L +  +L I+   +N + G I    S+    QL
Sbjct: 135  LTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIY---SNNLTGVI--PPSMAKLRQL 189

Query: 455  KSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL 514
            + +    N G S   P  +     LK   L+   + G  P  L E    L  L L  + L
Sbjct: 190  RIIRAGRN-GFSGVIPSEISGCESLKVLGLAENLLEGSLPKQL-EKLQNLTDLILWQNRL 247

Query: 515  AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNV 574
            +G     + +  RL  L +  N F G IP EIG  L  +    +  N L G IP   GN+
Sbjct: 248  SGEIPPSVGNISRLEVLALHENYFTGSIPREIGK-LTKMKRLYLYTNQLTGEIPREIGNL 306

Query: 575  IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN 634
            I    +D S N+LTG IP       +NL+ L L  N L G I   +  L  L  L L  N
Sbjct: 307  IDAAEIDFSENQLTGFIPKEFGHI-LNLKLLHLFENILLGPIPRELGELTLLEKLDLSIN 365

Query: 635  HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 694
               G IPQ L     L  L L +N L GKIP  +G       + M  N L GPIP  FCR
Sbjct: 366  RLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCR 425

Query: 695  LDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 753
              +L +L +  N +SG++P       S+ ++ L  N L G L     FN  +L  L+L  
Sbjct: 426  FQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPI-ELFNLQNLTALELHQ 484

Query: 754  NYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP---- 809
            N+L+G+I   +  L  L  L LA+NN  GE+P ++  L ++   ++S N L G IP    
Sbjct: 485  NWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELG 544

Query: 810  SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT----TKNIAYAYQG 865
            SC     L  S N         K S  I+   G +    LEI   +    T  I +++  
Sbjct: 545  SCVTIQRLDLSGN---------KFSGYIAQELGQL--VYLEILRLSDNRLTGEIPHSFGD 593

Query: 866  RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQ-TLNLSHNNLTGTIPLTFSNLRHIESLDL 924
              L+ L  L L  N L  +IP ++G LT +Q +LN+SHNNL+GTIP +  NL+ +E L L
Sbjct: 594  --LTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYL 651

Query: 925  SYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP 984
            + NKLSG+IP  + +L +L I  ++ NNL G +P+ TA F   + S++ GN  LC     
Sbjct: 652  NDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPD-TAVFQRMDSSNFAGNHGLCNSQRS 710

Query: 985  ICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYW--RRRWLY 1042
             C+ L   S++       + LI+        TI+  IVI  + ++ ++   W  +RR   
Sbjct: 711  HCQPLVPHSDSKL-----NWLINGSQRQKILTIT-CIVIGSVFLITFLGLCWTIKRREPA 764

Query: 1043 LVEMW------ITSCYYF 1054
             V +       +   YYF
Sbjct: 765  FVALEDQTKPDVMDSYYF 782

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  234 bits (598), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 210/718 (29%), Positives = 339/718 (47%), Gaps = 55/718 (7%)

Query: 352  AHLQELYIDNNDLR--GSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 409
             +LQ L + +N +     + +  +  ++L  +++S N+L G +  +P   L S+  + LS
Sbjct: 125  CYLQVLDLSSNSISDYSMVDYVFSKCSNLVSVNISNNKLVGKLGFAP-SSLQSLTTVDLS 183

Query: 410  NNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINE-SHSLTPKFQLKSLSLSSNYGDS 466
             N    +IP S    F  S LK  D  +N ++G+ ++ S  +       SLS ++  GD 
Sbjct: 184  YNILSDKIPESFISDFPAS-LKYLDLTHNNLSGDFSDLSFGICGNLTFFSLSQNNLSGDK 242

Query: 467  VTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHK 526
              FP  L +   L+   +S   + G+ PN                    G +     S +
Sbjct: 243  --FPITLPNCKFLETLNISRNNLAGKIPN--------------------GEY---WGSFQ 277

Query: 527  RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 586
             L+ L +++N   G IP E+  +  +LV  ++S N   G +PS F   ++LQ L+L NN 
Sbjct: 278  NLKQLSLAHNRLSGEIPPELSLLCKTLVILDLSGNTFSGELPSQFTACVWLQNLNLGNNY 337

Query: 587  LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ---S 643
            L+G+  + +      + +L ++ N++ G +   + +  NLR L L  N F G +P    S
Sbjct: 338  LSGDFLNTVVSKITGITYLYVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGFCS 397

Query: 644  LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 703
            L     L+ + + NN LSG +P  LG  K L+ I +  N L GPIP E   L +L  L +
Sbjct: 398  LQSSPVLEKILIANNYLSGTVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVM 457

Query: 704  SDNNISGSLPS--CFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 761
              NN++G++P   C    +++ + L+ N+L G + E +   C++++ + LS N L G IP
Sbjct: 458  WANNLTGTIPEGVCVKGGNLETLILNNNLLTGSIPE-SISRCTNMIWISLSSNRLTGKIP 516

Query: 762  DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESY 821
              I  LS+L+ L L +N+L G VP QL     L  LDL+ NNL G +P    +       
Sbjct: 517  SGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPGELASQAGLVMP 576

Query: 822  NNNSSPDKPF---KTSFSISGPQGSVEKKILEIFEFTTKNIAYA------YQGRVLSLLA 872
             + S     F   +      G  G VE + +         + ++      Y G  +   +
Sbjct: 577  GSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFS 636

Query: 873  G------LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSY 926
                    D+S N + G IPP  GN+  +Q LNL HN +TGTIP +F  L+ I  LDLS+
Sbjct: 637  ANGSMIYFDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSH 696

Query: 927  NKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPIC 986
            N L G +P  L  L+ L+   V+ NNL+G IP +  Q  TF  S Y  N  LCG+PL  C
Sbjct: 697  NNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIP-FGGQLTTFPVSRYANNSGLCGVPLRPC 755

Query: 987  RSLATMSEASTSNEGDDNLIDMDSFFITFT-ISYVIVIFGIVVVLYVNPYWRRRWLYL 1043
             S       S  +     +       I F+ + +V+++  +  V  V    ++R  Y+
Sbjct: 756  GSAPRRPITSRIHAKKQTVATAVIAGIAFSFMCFVMLVMALYRVRKVQKKEQKREKYI 813

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  232 bits (592), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 229/755 (30%), Positives = 357/755 (47%), Gaps = 100/755 (13%)

Query: 336  LGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSS 395
            L TNSS      L  L +L+ L + N +L G +P  L N + L ++++ FN+  G I +S
Sbjct: 100  LKTNSS------LFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPAS 153

Query: 396  PLVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQ 453
             + +L  +  L L+NN     IP SL  L     L++F   +N + G+I +S  +    Q
Sbjct: 154  -IGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELF---SNRLVGKIPDS--IGDLKQ 207

Query: 454  LKSLSLSSN--YGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 511
            L++LSL+SN   G+    P  L +   L    L+H +++GE P   + N  +L  +   N
Sbjct: 208  LRNLSLASNNLIGE---IPSSLGNLSNLVHLVLTHNQLVGEVPA-SIGNLIELRVMSFEN 263

Query: 512  DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSF 571
            +SL+G   +   +  +L    +S+NNF    P ++  I  +L YF++S N+  G  P S 
Sbjct: 264  NSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMS-IFHNLEYFDVSYNSFSGPFPKSL 322

Query: 572  GNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 631
              +  L+ + L  N+ TG I          L+ L L  N L G I   I  L NL  L +
Sbjct: 323  LLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDI 382

Query: 632  EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR--WLGNLKGLQH------------- 676
              N+F G IP ++SK  +L  L L+ NNL G++P   W  N   L H             
Sbjct: 383  SHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEE 442

Query: 677  -----IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF--YPLSIKQVHLSKN 729
                 + +  N  +GPIP   C+L SL  LD+S+N  SGS+PSC   +  SIK+++L  N
Sbjct: 443  ALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDN 502

Query: 730  MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD------------------------WID 765
               G L +  F   + LV+LD+S+N L G  P                         W++
Sbjct: 503  NFSGTLPD-IFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLE 561

Query: 766  GLSQLSHLNLAHNNLEGEVPIQLCRL--NQLQLLDLSDNNLHGLIPSCF-----DNTTLH 818
             L  L  LNL  N   G +  +   +    L+++D+S NN  G +P  +     D TTL 
Sbjct: 562  SLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLT 621

Query: 819  ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 878
            E  +   +    +  S+                 E   K +  +++ R+      +D S 
Sbjct: 622  EEMDQYMTEFWRYADSY-------------YHEMEMVNKGVDMSFE-RIRRDFRAIDFSG 667

Query: 879  NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV 938
            NK+ G+IP  +G L  ++ LNLS N  T  IP   +NL  +E+LD+S NKLSG+IP+ L 
Sbjct: 668  NKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLA 727

Query: 939  DLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEAST- 997
             L+ L+    ++N L G +P  T QF     SS+  NP L GL   ICR    ++  S  
Sbjct: 728  ALSFLSYMNFSHNLLQGPVPRGT-QFQRQKCSSFLDNPGLYGLE-DICRDTGALNPTSQL 785

Query: 998  ---SNEGDDNLIDMDSFFITFTISYVI-VIFGIVV 1028
                +E ++N+ +    ++   I+Y   V+ G+V+
Sbjct: 786  PEDLSEAEENMFN----WVAAAIAYGPGVLCGLVI 816

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  232 bits (591), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 214/671 (31%), Positives = 314/671 (46%), Gaps = 102/671 (15%)

Query: 348 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 407
           L  L HLQ      N L GS+P  +    +L  LD+S NQLTG I      +L +++ L 
Sbjct: 188 LGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRD-FGNLLNLQSLV 246

Query: 408 LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 467
           L+ N     +  E + N S L   +  +N++ G+I     L    QL++L +  N   S 
Sbjct: 247 LTENLLEGDIPAE-IGNCSSLVQLELYDNQLTGKI--PAELGNLVQLQALRIYKNKLTS- 302

Query: 468 TFPKFLYHQHELKEAELSHIKMIGEFPNWL--LENNTKLEFLYLVNDSLAGPFRLPIHSH 525
           + P  L+   +L    LS   ++G     +  LE+   LE L L +++  G F   I + 
Sbjct: 303 SIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLES---LEVLTLHSNNFTGEFPQSITNL 359

Query: 526 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 585
           + L  L V  NN  G +P ++G +L +L   +   N L G IPSS  N   L+ LDLS+N
Sbjct: 360 RNLTVLTVGFNNISGELPADLG-LLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHN 418

Query: 586 KLTGEIPDHLAMC----------------------CVNLEFLSLSNNSLKGHIFSRIFSL 623
           ++TGEIP                            C NLE LS+++N+L G +   I  L
Sbjct: 419 QMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKL 478

Query: 624 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 683
           + LR L +  N   G IP+ +     L  LYL++N  +G+IPR + NL  LQ + M  N 
Sbjct: 479 QKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSND 538

Query: 684 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFN 742
           LEGPIP E   +  L +LD+S+N  SG +P+ F  L S+  + L  N  +G +   +  +
Sbjct: 539 LEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIP-ASLKS 597

Query: 743 CSSLVTLDLSYNYLNGSIP-DWIDGLSQLS-HLNLAHNNLEGEVPIQLCRLNQLQLLDLS 800
            S L T D+S N L G+IP + +  L  +  +LN ++N L G +P +L +L  +Q +DLS
Sbjct: 598 LSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLS 657

Query: 801 DNNLHGLIP----SCFDNTTLHESYNNNSS--PDKPFKTSFSISGPQGSVEKKILEIFEF 854
           +N   G IP    +C +  TL  S NN S   PD+ F                       
Sbjct: 658 NNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVF----------------------- 694

Query: 855 TTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS 914
                    QG  + ++  L+LS N   G IP   GN+T + +L+LS NNLTG IP + +
Sbjct: 695 ---------QG--MDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLA 743

Query: 915 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDG 974
           NL  ++ L L                        A NNL G +PE +  F   N S   G
Sbjct: 744 NLSTLKHLKL------------------------ASNNLKGHVPE-SGVFKNINASDLMG 778

Query: 975 NPFLCGLPLPI 985
           N  LCG   P+
Sbjct: 779 NTDLCGSKKPL 789

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  226 bits (575), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 224/731 (30%), Positives = 346/731 (47%), Gaps = 89/731 (12%)

Query: 279 MSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGT 338
           +S   +NG +SG  F    SL  LD+    ++   + L  +G S   LK+L++S +TL  
Sbjct: 106 LSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLG-SCSGLKFLNVSSNTLDF 162

Query: 339 NSSRILDQGLCPLAHLQELYIDNNDLRGS--LPWCLANTTS-LRILDVSFNQLTGSISSS 395
                   G   L  L+ L +  N + G+  + W L++    L+ L +S N+++G +  S
Sbjct: 163 PGKV---SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS 219

Query: 396 PLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLK 455
             V+L   E L +S+N+F   +    L + S L+  D   N+++G+   S +++   +LK
Sbjct: 220 RCVNL---EFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDF--SRAISTCTELK 272

Query: 456 SLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLA 515
            L++SSN       P  L     L+   L+  K  GE P          +FL    D+L 
Sbjct: 273 LLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIP----------DFLSGACDTLT 319

Query: 516 GPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIP-SSFGNV 574
           G              LD+S N+F G +P   G     L    +S N   G +P  +   +
Sbjct: 320 G--------------LDLSGNHFYGAVPPFFGSCS-LLESLALSSNNFSGELPMDTLLKM 364

Query: 575 IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS--LRNLRWLLLE 632
             L+ LDLS N+ +GE+P+ L     +L  L LS+N+  G I   +       L+ L L+
Sbjct: 365 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 424

Query: 633 GNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEF 692
            N F G+IP +LS CS L  L+L+ N LSG IP  LG+L  L+ + +  N LEG IP E 
Sbjct: 425 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 484

Query: 693 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 752
             + +L+ L +  N+++G +PS                           NC++L  + LS
Sbjct: 485 MYVKTLETLILDFNDLTGEIPSGLS------------------------NCTNLNWISLS 520

Query: 753 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 812
            N L G IP WI  L  L+ L L++N+  G +P +L     L  LDL+ N  +G IP+  
Sbjct: 521 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 580

Query: 813 DNTTLHESYN----------NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNI-AY 861
              +   + N           N    K    + ++   QG   +++  +      NI + 
Sbjct: 581 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 640

Query: 862 AYQGRVLSL------LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSN 915
            Y G           +  LD+S N L G+IP +IG++  +  LNL HN+++G+IP    +
Sbjct: 641 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 700

Query: 916 LRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGN 975
           LR +  LDLS NKL G+IP+ +  L  L    ++ NNLSG IPE   QF TF  + +  N
Sbjct: 701 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNN 759

Query: 976 PFLCGLPLPIC 986
           P LCG PLP C
Sbjct: 760 PGLCGYPLPRC 770

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  222 bits (565), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 216/732 (29%), Positives = 346/732 (47%), Gaps = 61/732 (8%)

Query: 340  SSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVH 399
            S RI D+ +  L  L++L + +N   G++P  LA  T L  + + +N L+G +  + + +
Sbjct: 81   SGRISDR-ISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPA-MRN 138

Query: 400  LTSIEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL 457
            LTS+E   ++ N     IPV L      S L+  D  +N  +G+I    +   + QL +L
Sbjct: 139  LTSLEVFNVAGNRLSGEIPVGLP-----SSLQFLDISSNTFSGQIPSGLANLTQLQLLNL 193

Query: 458  SLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGP 517
            S +   G+    P  L +   L+   L    + G  P+  + N + L  L    + + G 
Sbjct: 194  SYNQLTGE---IPASLGNLQSLQYLWLDFNLLQGTLPS-AISNCSSLVHLSASENEIGGV 249

Query: 518  FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI-PSSFGNV-I 575
                  +  +L  L +SNNNF G +P  +     SL    +  NA    + P +  N   
Sbjct: 250  IPAAYGALPKLEVLSLSNNNFSGTVPFSL-FCNTSLTIVQLGFNAFSDIVRPETTANCRT 308

Query: 576  FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH 635
             LQ LDL  N+++G  P  L    ++L+ L +S N   G I   I +L+ L  L L  N 
Sbjct: 309  GLQVLDLQENRISGRFPLWLT-NILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNS 367

Query: 636  FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRL 695
              GEIP  + +C SL  L    N+L G+IP +LG +K L+ + + +N   G +P     L
Sbjct: 368  LTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNL 427

Query: 696  DSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 754
              L+ L++ +NN++GS P     L S+ ++ LS N   G +   +  N S+L  L+LS N
Sbjct: 428  QQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPV-SISNLSNLSFLNLSGN 486

Query: 755  YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 814
              +G IP  +  L +L+ L+L+  N+ GEVP++L  L  +Q++ L  NN  G++P  F +
Sbjct: 487  GFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGF-S 545

Query: 815  TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV--LSLLA 872
            + +   Y N SS       SFS   PQ     ++L     +  +I+ +    +   S L 
Sbjct: 546  SLVSLRYVNLSS------NSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALE 599

Query: 873  GLDLSCNKLVGHIPPQIGNLTRIQTLNLS------------------------HNNLTGT 908
             L+L  N+L+GHIP  +  L R++ L+L                         HN+L+G 
Sbjct: 600  VLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGV 659

Query: 909  IPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNT-LAIFIVAYNNLSGKIPEWTAQFATF 967
            IP +FS L ++  +DLS N L+G+IP  L  +++ L  F V+ NNL G+IP         
Sbjct: 660  IPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRIN- 718

Query: 968  NKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIV 1027
            N S + GN  LCG P      L    E+ST+ EG      M    +   I   ++     
Sbjct: 719  NTSEFSGNTELCGKP------LNRRCESSTA-EGKKKKRKMILMIVMAAIGAFLLSLFCC 771

Query: 1028 VVLYVNPYWRRR 1039
              +Y    WR++
Sbjct: 772  FYVYTLLKWRKK 783

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1066
255581263	912	serine-threonine protein kinase, plant-t	0.695	0.812	0.509	0.0
224124658	1228	predicted protein [Populus trichocarpa]	0.950	0.824	0.407	0.0
224142481	781	predicted protein [Populus trichocarpa]	0.707	0.965	0.469	1e-180
224098008	1097	predicted protein [Populus trichocarpa]	0.878	0.854	0.418	1e-179
224073436	1014	predicted protein [Populus trichocarpa]	0.816	0.857	0.431	1e-177
224073422	969	predicted protein [Populus trichocarpa]	0.832	0.915	0.419	1e-173
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.836	0.609	0.429	1e-173
224073382	1309	predicted protein [Populus trichocarpa]	0.959	0.781	0.380	1e-171
224134891	953	predicted protein [Populus trichocarpa]	0.730	0.817	0.444	1e-171
224123984	1016	predicted protein [Populus trichocarpa]	0.746	0.783	0.447	1e-169

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/766 (50%), Positives = 514/766 (67%), Gaps = 25/766 (3%)

Query: 288  LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQG 347
            +  Q  P+F++LE L +   +I L  SFLQ +G  M SLK LSLSG  L      +  QG
Sbjct: 168  IQAQDLPNFENLEELYLD--KIELENSFLQTVG-VMTSLKVLSLSGCGLTGALPNV--QG 222

Query: 348  LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 407
            LC L HL+ L + +N+  G LPWCL+N TSL++LD+S NQ  G IS+SPL  L S+ +L 
Sbjct: 223  LCELIHLRVLDVSSNEFHGILPWCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLD 282

Query: 408  LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 467
            +SNNHF++P SL P FNHS LK    +NN I  E  E HS  P+FQL S+ + S YG   
Sbjct: 283  VSNNHFQVPFSLGPFFNHSNLKHIRGQNNAIYLEA-ELHS-APRFQLISI-IFSGYGICG 339

Query: 468  TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 527
            TFP FLYHQ+ L+  +LSH+ + GEFPNWLL NNT+LE L LVN+SL+G  +LP+H H  
Sbjct: 340  TFPNFLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHVN 399

Query: 528  LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 587
            L  LD+SNN+   HIP+EIG  LP L   N+S N  DGSIPSSFGN+  L+ LDLSNN+L
Sbjct: 400  LLALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQL 459

Query: 588  TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 647
            +G IP+HLA  C +L  L LSNNSL+G +FS+ F+L NL WL L+ NHF G IP+SLSK 
Sbjct: 460  SGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSK- 518

Query: 648  SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN 707
            S+L  + L++N+LSG IP W+GNL  LQ++++  N L+GPIPVEFC+L  L++LD+++N+
Sbjct: 519  SALSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANNS 578

Query: 708  ISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGL 767
            +SG LPSC  P SI  VHLS+NM+ G      F     LVTLDLS N + G IP  I G+
Sbjct: 579  VSGILPSCLSPSSIIHVHLSQNMIEGPWTNA-FSGSHFLVTLDLSSNRITGRIPTLIGGI 637

Query: 768  SQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSP 827
            + L  LNL  N  +GE+P Q+C L QL L+ L+DNNL G IPSC     L    +++ +P
Sbjct: 638  NALRILNLKSNRFDGEIPAQICGLYQLSLIVLADNNLSGSIPSC-----LQLDQSDSLAP 692

Query: 828  DKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP 887
            D P   +        +     +    FTTK  +Y+YQG++LS ++G+D SCNKL G IPP
Sbjct: 693  DVPPVPN------PLNPYYLPVRPMYFTTKRRSYSYQGKILSYISGIDFSCNKLTGEIPP 746

Query: 888  QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 947
            ++GN + I +LNLS+N  TG IP TFSNL+ IESLDLSYN L+G IP QL++L  L+ F 
Sbjct: 747  EMGNHSAIYSLNLSYNRFTGPIPSTFSNLKQIESLDLSYNNLNGDIPSQLLELKFLSYFS 806

Query: 948  VAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPIC---RSLATMSEASTSNEGDDN 1004
            VA+NNL GK P+ T QFATF  SSY+GNP LCGLPLP     R  ++   AS  +E + N
Sbjct: 807  VAHNNLFGKTPKRTGQFATFEVSSYEGNPNLCGLPLPKSCTEREASSAPRASAMDE-ESN 865

Query: 1005 LIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITS 1050
             +DM++F+ +F +SY  VI G+ +VLY+NP WRR W   V++ I+S
Sbjct: 866  FLDMNTFYGSFIVSYTFVIIGMFLVLYINPQWRRAWFDFVDICISS 911

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124658|ref|XP_002330078.1| predicted protein [Populus trichocarpa] gi|222871503|gb|EEF08634.1| predicted protein [Populus trichocarpa]

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/1139 (40%), Positives = 636/1139 (55%), Gaps = 126/1139 (11%)

Query: 1    MLDLSGNAFNNN--VLSSLARLSSLRSLYLSDNRLEGSIDVKELDS-LRDLEELDIGGNK 57
            +LDL+ N FNN+  +LS    LS+L+SL LSDN+L GS  +K L S L+ LE L +  N+
Sbjct: 128  VLDLTRNRFNNDKGILSCFNGLSALKSLDLSDNQLTGS-GLKVLSSRLKKLENLHLSANQ 186

Query: 58   IDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERL 117
             +  + S           S TGF            ++L+ LD+S NE    V   GL+ L
Sbjct: 187  CNDSIFS-----------SITGF------------SSLKSLDLSYNE----VTGSGLKVL 219

Query: 118  S-RLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGS----IDAKEFDS---- 168
            S RL +L+ LDL  N CN+SI SS+   SSL SL+LS+N L GS    I+   + S    
Sbjct: 220  SSRLKRLENLDLSDNQCNDSIFSSLTGFSSLKSLNLSYNQLTGSSMVSIEKNGYYSFLQY 279

Query: 169  -----------------------LSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLS-- 203
                                   L NLEEL +  N+++N  +     G   LKSLDLS  
Sbjct: 280  TKWILPLYPSDNFLSGFQVLVSGLRNLEELHLYSNKLNN-NILSSLSGFSTLKSLDLSYN 338

Query: 204  ------GV-GIRD-----------GNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHN 245
                  G+ G+R+            N +L S+  F +L +L L +N FT ++     L  
Sbjct: 339  KFTGSTGLKGLRNLEELYLGFNKFNNSILSSLSGFSTLKSLDLSNNKFTGSIG----LKG 394

Query: 246  FTNLEYLTLDDSSLHISLL-QSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM 304
              NLE L L+ +    S+L +S+G++ PSLK L  S  +      G+G  +  SLE + +
Sbjct: 395  LRNLETLNLEYTDFKESILIESLGAL-PSLKTLYASYSKFKHF--GKGLSNSSSLEEVFL 451

Query: 305  RFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 364
             ++ +    SFL+ IG  + +LK LSL+G      SS +  +G C L +L+ L++  N+L
Sbjct: 452  YYSYLP--ASFLRNIGH-LSTLKVLSLAGVDF---SSTLPAEGWCELKNLEHLFLSRNNL 505

Query: 365  RGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFN 424
            +G LP CL N +SLR LD+S NQL G+I+ S L HL  +E L +S NHF++P S     N
Sbjct: 506  KGVLPPCLGNLSSLRSLDLSDNQLEGNIALSHLSHLPQLEYLSVSYNHFQVPKSFGSFMN 565

Query: 425  HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLS--SNYGDSVTFPKFLYHQHELKEA 482
             S LK F   NNE+         L PKFQL   S S  ++      FP FL  Q++L   
Sbjct: 566  LSNLKFFACDNNELI-PAPSFQPLVPKFQLLFFSASNCTSKPHEAGFPNFLQSQYDLVVV 624

Query: 483  ELSHIKMIGE-FPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGH 541
            +LSH K +GE FP+WL ENNTKL  LYL + S  GP +LP H    L+ +D+S N+  G 
Sbjct: 625  DLSHNKFVGEPFPSWLFENNTKLNRLYLRDTSFIGPLQLPQHPTPNLQTVDMSGNSIHGQ 684

Query: 542  IPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDH-LAMCCV 600
            I   I  I P L  F ++ N+L G IP  FGN+  L +LDLSNN ++ E+ +H       
Sbjct: 685  IARNICSIFPRLKNFMMANNSLTGCIPPCFGNMSSLGYLDLSNNHMSCELLEHNFPTVGS 744

Query: 601  NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL 660
            +L FL LSNN+ KG +   +F++  L +L L+GN   G++  + S  SS     ++NN L
Sbjct: 745  SLWFLKLSNNNFKGRLPLSVFNMTGLLYLFLDGNKLAGQVSDTFSLASSFLWFDISNNIL 804

Query: 661  SGKIPRWLGN--LKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP 718
            SG +PR +GN  L  LQ I + +NH EG IP+E+     L+ LD+S+NN+SGSLP  F  
Sbjct: 805  SGMLPRGIGNSSLNSLQGIDLSRNHFEGTIPIEYFNSSGLEFLDLSENNLSGSLPLGFNA 864

Query: 719  LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN 778
            L ++ VHL  N L G L    F+N SSL TLDL  N L G IP+WID LS+LS   L  N
Sbjct: 865  LDLRYVHLYGNRLSGPLPF-DFYNLSSLATLDLGDNNLTGPIPNWIDSLSELSIFVLKSN 923

Query: 779  NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTS---- 834
               G++P QLC+L +L +LDLS+NN  GL+PSC  N  L+ + ++  + D P   S    
Sbjct: 924  QFNGKLPHQLCKLRKLSILDLSENNFSGLLPSCLRN--LNFTASDEKTLDAPRTGSDYGS 981

Query: 835  -----FSISGPQGSVEKKIL--EI-----FEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV 882
                  SI G   S++  IL  EI      E T K   Y Y+G +L  ++ +DLSCN+  
Sbjct: 982  GEEIFASIGGRGFSLDDNILWAEISVKISVELTAKKNFYTYEGDILRYMSVMDLSCNRFN 1041

Query: 883  GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNT 942
            G IP + GNL+ I +LNLS NNLTG IP +F NL+ IESLDLS+N L+G+IP QLV+L  
Sbjct: 1042 GEIPTEWGNLSGIYSLNLSQNNLTGLIPSSFFNLKQIESLDLSHNNLNGRIPAQLVELTF 1101

Query: 943  LAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNE-- 1000
            L +F V+YNNLSG+ PE   QFATF++SSY GNP LCG PL           A   N+  
Sbjct: 1102 LEVFNVSYNNLSGRTPEMKNQFATFDESSYKGNPLLCGPPLQNSCDKTESPSARVPNDFN 1161

Query: 1001 GDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNL 1059
            GD   IDMDSF+ +F + Y+IV+  I  VL +NP+WRRRW Y +E  I +C  F+  N 
Sbjct: 1162 GDGGFIDMDSFYASFGVCYIIVVLTIAAVLCINPHWRRRWFYFIEECIDTCCCFLAINF 1220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 380/810 (46%), Positives = 512/810 (63%), Gaps = 56/810 (6%)

Query: 274  LKNLSMSGCEVNGVLSGQGFPH---FKSLEHLDMRFARIALNT-SFLQIIGESMPSLKYL 329
            L  L + G E+    +  GF        LE L++ F +I  +T SFL    E + SLK+L
Sbjct: 2    LVELRLGGNEIQNFATSTGFERSLRLNKLEILELSFNKINDSTLSFL----EGLSSLKHL 57

Query: 330  SLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLT 389
            +L  + L      I  +GLC L  LQEL I  NDL G LP CL N  +L++LD+SFN  +
Sbjct: 58   NLDNNQL---KGSIDMKGLCELKQLQELDISYNDLNG-LPSCLTNLNNLQVLDISFNNFS 113

Query: 390  GSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLT 449
            G+IS S +  LTSI +L+LS+NHF+IP+SL P FN S LK  +  +NEI       H+L 
Sbjct: 114  GNISLSRIGSLTSIRDLKLSDNHFQIPISLGPFFNLSNLKNLNGDHNEIYESTELVHNLI 173

Query: 450  PKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL 509
            P+FQL+ LSL+  +G   TFPKFLY+QH+L+  +LSHIK+IGEFP+WLL+NNTKLE LYL
Sbjct: 174  PRFQLQRLSLAC-HGFGGTFPKFLYYQHDLQFVDLSHIKIIGEFPSWLLQNNTKLEALYL 232

Query: 510  VNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPS 569
            VN SL+G  +LP  SH  L  LD+S N+ Q  IP +IG   P L + N+S N   GSIPS
Sbjct: 233  VNSSLSGSLQLPNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEFLNLSRNYFSGSIPS 292

Query: 570  SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 629
            S  N+  L  LDLSNN L+G IP+ L   C++L  L LSNN LKG  F R F+L  L  L
Sbjct: 293  SISNMSSLGVLDLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQFFWRSFNLAYLTDL 352

Query: 630  LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP 689
            +L GN   G +P SLS  S L+ L ++ NNLSGKIPRW+G +  LQ++ + +N+L G +P
Sbjct: 353  ILSGNQLTGILPNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSLQYLDLSENNLYGSLP 412

Query: 690  VEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTL 749
              FC   ++                        +V+LSKN L G L  G    C SL  L
Sbjct: 413  SSFCSSRTM-----------------------TEVYLSKNKLEGSLI-GALDGCLSLNRL 448

Query: 750  DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP 809
            DLS+NY  G IP+ I  L +LS L L +NNLEG++P QLC+L +L L+DLS N+L G I 
Sbjct: 449  DLSHNYFGGGIPESIGSLLELSFLLLGYNNLEGKIPSQLCKLEKLSLIDLSHNHLFGHIL 508

Query: 810  SCFD---------NTTLHESYNNNSSPDKPFKTSFSISGPQG-SVEKKILEIFEFTTKNI 859
             C            T+L+ S N+    ++  +  F +   +  S+ K +    EFTTK+I
Sbjct: 509  PCLQPTSKWQRERETSLNPSGNSLGRENRGPQIVFPVPAVEDPSMNKSV----EFTTKSI 564

Query: 860  AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 919
            +Y+++G +L  ++G+DLSCN L G IP ++GNL+ IQ LNLSHN+LTG IP TFSNL+ I
Sbjct: 565  SYSFKGIILKYISGIDLSCNNLTGEIPVELGNLSNIQVLNLSHNSLTGPIPPTFSNLKEI 624

Query: 920  ESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLC 979
            ESLDLSYN L+G+IPRQL+DLN L+ F VA+NNLSGK PE  AQF+TFNKS Y+GNP LC
Sbjct: 625  ESLDLSYNNLNGEIPRQLLDLNFLSAFSVAHNNLSGKTPEMVAQFSTFNKSCYEGNPLLC 684

Query: 980  GLPLP--ICRSL--ATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPY 1035
            G PL     R+L  + +  + T  + ++ +IDM++F +TF+++Y++V+  I  VLY+NP 
Sbjct: 685  GPPLARNCTRALPPSPLPRSQTHKKEENGVIDMEAFIVTFSVAYIMVLLTIGSVLYINPR 744

Query: 1036 WRRRWLYLVEMWITSCYYFVIDNL-IPTRF 1064
            WRR W Y +   I +CYYF++DNL +P RF
Sbjct: 745  WRRAWFYFIGESINNCYYFLVDNLPVPARF 774

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098008|ref|XP_002334579.1| predicted protein [Populus trichocarpa] gi|222873205|gb|EEF10336.1| predicted protein [Populus trichocarpa]

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 448/1071 (41%), Positives = 591/1071 (55%), Gaps = 134/1071 (12%)

Query: 2    LDLSGNAFNNN--VLSSL-ARLSSLRSLYLSDNRL-EGSIDVKELDS-LRDLEELDIGGN 56
            LDL  N F N+  +LS     LS+L+SL LS N L  GS  +K L S L+ LE L +  N
Sbjct: 134  LDLRVNKFTNDKSILSCFNGNLSTLKSLDLSFNGLTAGSGGLKVLSSRLKKLENLLLREN 193

Query: 57   KIDK--FMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGL 114
            + +   F    G S LKSL LSG    G+                             GL
Sbjct: 194  QYNDSIFPSLTGFSSLKSLYLSGNQLTGS-----------------------------GL 224

Query: 115  ERLS-RLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLE 173
            + LS RL KL+ L L    CN+SI  S+   SSL SL+LS N L GS        L  LE
Sbjct: 225  KDLSSRLKKLENLHLSEIQCNDSIFPSLTGFSSLKSLYLSGNQLTGSGFEIISSHLGKLE 284

Query: 174  ELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNF 233
             LD++ N I N  +    RGL  LKSL+LSG      N LL S                 
Sbjct: 285  NLDLSHNNIFNDSILSHLRGLSHLKSLNLSG------NMLLGS----------------- 321

Query: 234  TATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGF 293
                TT   L N               + +LQS+ S +PSLK LS+        LS   F
Sbjct: 322  ----TTINGLRN---------------LDILQSLRS-WPSLKTLSLKDTN----LSQGTF 357

Query: 294  PHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL-GTNSSRILDQGLCPLA 352
             +  +LE L +    + +N  FLQ  G ++P+LK LS++   L GT    +  QG C L 
Sbjct: 358  FNSSTLEELHLDNTSLPIN--FLQNTG-ALPALKVLSVAECDLHGT----LPAQGWCELK 410

Query: 353  HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 412
            +L++L +  N+  G+LP CL N +SL++LDVS NQ TG+I+  PL  L S+E L LSNN 
Sbjct: 411  NLKQLDLARNNFGGALPDCLGNLSSLQLLDVSDNQFTGNIAFGPLTKLISLEFLSLSNNL 470

Query: 413  FRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGD---SVTF 469
            F +P+S++P  NHS LK F ++NN +  E     +L PKFQL    LSS+      +V  
Sbjct: 471  FEVPISMKPFMNHSSLKFFSSENNRLVTESAAFDNLIPKFQLVFFRLSSSPTSEALNVEI 530

Query: 470  PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLR 529
              FLY+Q++L+  +LSH  + G FP+WLL+NNT++E LYL  +S  G  +L  H +  + 
Sbjct: 531  LDFLYYQYDLRTLDLSHNNIFGMFPSWLLKNNTRMEQLYLSENSFVGTLQLLDHPYPNMT 590

Query: 530  FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 589
             LD+SNNN  G IP +I  I P+L    ++ N   G IPS  GN   L FLDLSNN+L+ 
Sbjct: 591  ELDISNNNINGQIPKDICLIFPNLWILRMADNGFTGYIPSCLGNFSSLSFLDLSNNQLST 650

Query: 590  EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ-SLSKCS 648
               + L      ++ L LSNNSL G I + +F+    ++L L GN+F G+I    L    
Sbjct: 651  VKLEQLT----TIQVLKLSNNSLGGQIPTSVFNSSISQYLYLGGNYFWGQISDFPLYGWK 706

Query: 649  SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI 708
                L L+NN  SG +PR   N    + + + KN  +GPIP +FC+LD L+ LD+SDN +
Sbjct: 707  VWSVLDLSNNQFSGMLPRSFFNFTYDEVLDLSKNLFKGPIPRDFCKLDRLEFLDLSDNYL 766

Query: 709  SGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLS 768
            SG +PSCF P  I  +HLSKN L G L  G F+N SSLVT+DL  N   GSIP+WI  LS
Sbjct: 767  SGYMPSCFNPPQITHIHLSKNRLSGPLTYG-FYNSSSLVTMDLRDNSFIGSIPNWIGNLS 825

Query: 769  QLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPD 828
             LS L L  NN +GE+ +QLC L QL +LD+S N L G +PSC  N TL E   N     
Sbjct: 826  SLSVLLLRANNFDGELAVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTLKEIPEN----- 880

Query: 829  KPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ 888
                        +GS               I ++  G+VLS + G+DLS N  VG IPP+
Sbjct: 881  -----------ARGS--------------RIWFSVMGKVLSYMYGIDLSNNNFVGAIPPE 915

Query: 889  IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 948
             GNL++I +LNLSHNNLTG+IP TFSNL+ IESLDLSYN L+G IP QL ++ TL +F V
Sbjct: 916  FGNLSKILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGAIPPQLTEITTLEVFSV 975

Query: 949  AYNNLSGKIPEWTAQFATF-NKSSYDGNPFLCGLPLP--ICRSLATMSEASTSNEGDDNL 1005
            AYNNLSG+ PE   QF TF +++ Y+GNPFLCG PL          +       +GDD  
Sbjct: 976  AYNNLSGRTPERKYQFGTFDDENCYEGNPFLCGPPLRNNCSEEAVPLQPVPNDEQGDDGF 1035

Query: 1006 IDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVI 1056
            IDM+ F+I+F + Y +V+  I  VLY+NPYWRRRW Y +E  I +CYYFV+
Sbjct: 1036 IDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWSYFIEDCINTCYYFVV 1086

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  629 bits (1623), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 408/945 (43%), Positives = 557/945 (58%), Gaps = 75/945 (7%)

Query: 147  LTSLHLSHNILQGSIDAKEFDSLS-NLEELDINDNEIDNVE-VSRGYRGLRKLKSLDLSG 204
            L SL L  N L G ++ + F+ LS NL  LD++DN  +N + +     GL  LKSLDLSG
Sbjct: 99   LQSLELRFNGLVGCLENEGFEVLSSNLRNLDLSDNRFNNDKSILSCMTGLSTLKSLDLSG 158

Query: 205  VGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL-HISL 263
             G+          GS   + + HLE            +L N  +L Y   +DS L H+  
Sbjct: 159  NGL---------TGSGFEIISSHLE------------KLDNL-DLSYNIFNDSILSHLRG 196

Query: 264  LQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESM 323
            L         LK+L++SG  + G  +  G   F S    ++   R +L  +FLQ IG ++
Sbjct: 197  LSY-------LKSLNLSGNMLLGSTTVNG-TFFNSSTLEELYLDRTSLPINFLQNIG-AL 247

Query: 324  PSLKYLSLSGSTL-GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILD 382
            P LK LS++   L GT    +  QG C L +L++L +  N+L GSLP CL N +SL++LD
Sbjct: 248  PDLKVLSVAECDLHGT----LPAQGWCELKNLRQLDLSGNNLGGSLPDCLGNLSSLQLLD 303

Query: 383  VSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEI 442
            VS NQ TG+I+S PL +LTS+E L LSNN F +P+S++P  NHS LK F ++NN++  E 
Sbjct: 304  VSENQFTGNIASGPLTNLTSLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNKLVTEP 363

Query: 443  NESHSLTPKFQLKSLSLS-SNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN 501
                +L PKFQL    LS +    +V  P FLY+Q++++  +LSH  +   FP+WLL+NN
Sbjct: 364  AAFDNLIPKFQLVFFRLSKTTEALNVKIPDFLYYQYDIRVLDLSHNNITAMFPSWLLKNN 423

Query: 502  TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 561
            T+LE LYL N+S  G  +L  H +  +  LD+SNNN  G IP +I  I P++    ++ N
Sbjct: 424  TRLEQLYLSNNSFVGTLQLQDHPYLNMTELDISNNNMNGQIPKDICLIFPNMWSLRMANN 483

Query: 562  ALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF 621
               G IPS  GN+  L+ LDLSNN+L+    + L      + FL LSNN+L G + + +F
Sbjct: 484  GFTGCIPSCLGNISSLKILDLSNNQLSIVKLEQLT----TIWFLKLSNNNLGGQLPTSVF 539

Query: 622  SLRNLRWLLLEGNHFVGEIPQSL-SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 680
            +   L +L L GN+F G+I   L         L L++N  SG +PRWL N  GL  I + 
Sbjct: 540  NSSTLEYLYLHGNNFWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGLIAIDLS 599

Query: 681  KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 740
            KN+ +GPI  +FC+L+ L+ LD+S+NN+SG +PSCF P  I  VHLS+N L G L  G F
Sbjct: 600  KNYFKGPILRDFCKLNQLEYLDLSENNLSGYIPSCFSPPQITHVHLSENRLSGPLTYG-F 658

Query: 741  FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 800
            +N SSLVT+DL  N   GS P+WI  LS LS L L  N+ +GE+P+QLC L QL +LD+S
Sbjct: 659  YNNSSLVTMDLRDNNFTGSFPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSILDVS 718

Query: 801  DNNLHGLIPSCFDNTTLHESYNNNSS-------PDKPFKTSFSISGP----------QGS 843
             N L G +PSC  N T  ES     +            K  +   GP          +G 
Sbjct: 719  QNQLSGPLPSCLGNLTFKESSQKTLADLGADVLSRSIEKAYYETMGPPLVESMYNLRKGF 778

Query: 844  VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 903
            +     E+ EFTTKN+ Y Y+G+ LS ++G+DLS N  VG IPP+ G+L++I +LNLSHN
Sbjct: 779  LLNFTEEVIEFTTKNMYYRYKGKTLSYMSGIDLSNNNFVGAIPPEFGDLSKILSLNLSHN 838

Query: 904  NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 963
            NLTG+IP TFSNL+ IESLDLSYN L+G IP QL D+ TL +F VA+NNLSG  PE   Q
Sbjct: 839  NLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTDITTLEVFSVAHNNLSGNTPERKYQ 898

Query: 964  FATFNKSSYDGNPFLCGLPL------------PICRSLATMSEASTSNEGDDNLIDMDSF 1011
            F TF++S Y+GNPFLCG PL            P+              +GDD  IDM+ F
Sbjct: 899  FGTFDESCYEGNPFLCGPPLRNNCSEEAVPSQPVPSQPVPSQPVPYDEQGDDGFIDMEFF 958

Query: 1012 FITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVI 1056
            +I F + Y +V+  IVVVLY++PYWRRRW Y +E  I +CYYFV+
Sbjct: 959  YINFGVCYTVVVMIIVVVLYIDPYWRRRWSYFIEDCIDTCYYFVV 1003

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 409/975 (41%), Positives = 559/975 (57%), Gaps = 88/975 (9%)

Query: 115  ERLSRLSKLKKLDLR-GNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSN-L 172
            +R+ +LS     D R G+   N+ L        L SL L +N L G ++ + F  LS+ L
Sbjct: 39   KRVIQLSLFDARDFRLGDWVLNASL--FLPFKELQSLDLGYNGLVGCLENEGFQVLSSKL 96

Query: 173  EELDINDNEIDNVE-VSRGYRGLR-------KLKSLDLSGVGIRDGNKLLQSMGSFPSLN 224
             EL ++DN  +N + +   + GL+       KL++LDLSG    D   +  ++  F SL 
Sbjct: 97   RELGLSDNRFNNDKSILSCFNGLKVLSSRLKKLENLDLSGNQCND--TIFPALTGFSSLK 154

Query: 225  TLHLESNNFTAT-LTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCE 283
            +L L  N  TA+ L     L +  +L+ L+L D++L      S G+ F S          
Sbjct: 155  SLDLSGNQLTASGLRKLDFLQSLRSLKTLSLKDTNL------SQGTFFNS---------- 198

Query: 284  VNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL-GTNSSR 342
                          +LE L +    + +N  FLQ    ++P+LK LS+    L GT    
Sbjct: 199  -------------STLEELHLDNTSLPIN--FLQNT-RALPALKVLSVGECDLHGT---- 238

Query: 343  ILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS 402
            +  QG C L +L++L +  N+  G+LP CL N +SL +LDVS NQ TG+I S PL +L S
Sbjct: 239  LPAQGWCELKNLKQLDLARNNFGGALPDCLGNLSSLTLLDVSENQFTGNIVSGPLTNLVS 298

Query: 403  IEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSL-SS 461
            +E L LSNN F +P S++P  NHS LK F ++NN +  E     +L PKFQL  LSL  +
Sbjct: 299  LEFLSLSNNLFEVPTSMKPFMNHSSLKFFSSENNRLVTEPAAFDNLIPKFQLVFLSLLKT 358

Query: 462  NYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP 521
                +V  P FLY+Q++L+  +LSH  + G FP+WLL+NNT++E L L ++S  G  +LP
Sbjct: 359  TEALNVHIPDFLYYQYDLRVLDLSHNNITGMFPSWLLKNNTRMEQLDLSDNSFVGTLQLP 418

Query: 522  IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLD 581
             H +  +  LD+SNNN    IP +I  ILP+L    +  N   G IPS  GN+  L  LD
Sbjct: 419  DHPYPNMTKLDISNNNMNSQIPKDICLILPNLESLRMVKNGFTGCIPSCLGNISSLSVLD 478

Query: 582  LSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIP 641
            LSNN+L+    + L      L FL LSNN+L G I   +F+   L +L L GN+F G+I 
Sbjct: 479  LSNNQLSTVKLELLT----TLMFLKLSNNNLGGQIPISVFNSSTLEFLYLNGNNFCGQIL 534

Query: 642  Q-SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEF-CRLDSLQ 699
              SL +      L L+NN  SG +PRW  N   L+ I + KNH +GPIP +F C+ D L+
Sbjct: 535  YLSLYEQKMWFVLDLSNNQFSGMLPRWFVNSTVLEAIDLSKNHFKGPIPRDFFCKFDHLE 594

Query: 700  ILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 759
             LD+S+NN+SG +PSCF P  I  +HLSKN L G L  G F+N SSLVT+DL  N    S
Sbjct: 595  YLDLSENNLSGYIPSCFSPPQITHLHLSKNRLSGPLTYG-FYNSSSLVTMDLQDNSFTDS 653

Query: 760  IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE 819
            IP+WI  LS LS L L  N+ +           QL +LD+S N L G +PSC  N T  E
Sbjct: 654  IPNWIGNLSSLSVLLLRANHFD----------EQLSILDVSQNQLSGPLPSCLGNLTFKE 703

Query: 820  SYNNNSSPDKPF-------KTSFSISGP---------QGSVEKKILEIFEFTTKNIAYAY 863
            S          F       KT +   GP         +G     I E+ EFTTK ++Y Y
Sbjct: 704  SSQKAILDFVIFDISRSIEKTYYETMGPPLVDSVYLGKGFGLNLIEEVIEFTTKKMSYGY 763

Query: 864  QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 923
            +G+VL+ ++G+DLS N  VG IPP+ GNL+ I +LNLSHNNLTG+IP TFSNL+ IESLD
Sbjct: 764  KGKVLNYMSGIDLSNNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLKQIESLD 823

Query: 924  LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 983
            LSYN L+G IP QL ++ TL +F VA+NNLSGK PE   QF TF++S Y+GNPFLCG PL
Sbjct: 824  LSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPL 883

Query: 984  P-ICRSLATMSEASTSNE-GDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWL 1041
               C   A  S+   ++E GDD  +DM+ F+I+F + Y +V+  I  VLY+NPYWRRRWL
Sbjct: 884  RNNCSEEAVSSQPVPNDEQGDDGFVDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWL 943

Query: 1042 YLVEMWITSCYYFVI 1056
            + +E  I +CYYF +
Sbjct: 944  FFIEDCIDTCYYFGV 958

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 399/930 (42%), Positives = 561/930 (60%), Gaps = 38/930 (4%)

Query: 147  LTSLHLSHNILQ--GSIDAKEFD-SLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLS 203
            L  L+LS N+L   G  D  E    L+NLE LD+++N +D   ++               
Sbjct: 545  LKILNLSTNMLVTLGDDDGSERPFKLNNLELLDLSNNTLDISILAS--LTELSSLKSLSL 602

Query: 204  GVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISL 263
            G  I +G+  +Q + +  +L  L L  N+  + +TTT  L +   L  L L+ +  +IS 
Sbjct: 603  GTNILEGS--IQELAALHNLEELDLSKNDLESFITTTG-LKSLRKLRVLHLETNDFNIST 659

Query: 264  LQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESM 323
            L+S+G +   LK L + G ++ G ++ +   + ++LE LD+    I+  +S LQI+ E M
Sbjct: 660  LKSLGRL-SLLKELYLGGNKLEGSVTLRELNNLRNLEVLDLSSTNIS--SSILQIV-EVM 715

Query: 324  PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 383
             SLK LSL  +  G N S+   QGLC L +LQEL + +N   GS+  CL N TSLR LD+
Sbjct: 716  TSLKALSLRSN--GINGSQTALQGLCKLKNLQELDLSDNGFEGSVSPCLGNLTSLRALDL 773

Query: 384  SFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFD--AKNNEINGE 441
            S N+ +G++ SS    L  +E L LS+N F+    +     HSKL++ D    NN +  E
Sbjct: 774  SKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQTFPPISSFAKHSKLEVLDLICGNNTLLLE 833

Query: 442  INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN 501
             +E  +  P FQLK   LSS    + + P FL++QH+L+  +LS+  +  +FP WL++NN
Sbjct: 834  -SEDQTWVPSFQLKVFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNN 892

Query: 502  TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 561
            T+LE L L N+SL G F LP   +     +D+SNN  QG +P  I   LP+L++ N+S N
Sbjct: 893  TRLEELNLKNNSLTGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRN 952

Query: 562  ALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF 621
            + +GSIPS FG +  L FLDLSNN  TG IP+ LAM C +LE+L LS N L G +F R+ 
Sbjct: 953  SFEGSIPS-FGGMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVS 1011

Query: 622  SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 681
            +L +LR L L+ NHF G+IP  LS  S L+ LY+++N++SGK+P W+GN+  L  +VMP 
Sbjct: 1012 NLPSLRHLELDDNHFSGKIPD-LSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPN 1070

Query: 682  NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFF 741
            N LEGPIPVEFC LD+L++LD+S+NN+SGSLPSCF P  +  VHL +N L G L +  F 
Sbjct: 1071 NSLEGPIPVEFCSLDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPLTKA-FT 1129

Query: 742  NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 801
                L TLD+  N L+G IPDWI   S LS L L  N+ +G++P QLC+L+++ +LDLS 
Sbjct: 1130 RSMDLATLDIRNNNLSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSKITILDLSY 1189

Query: 802  NNLHGLIPSCFDNTTLHESYNNNSS------PDKPFKT----SFSISGPQGSVEKKILE- 850
            N+L G IPSC +       + +         P   F +    S  I   Q +V    +  
Sbjct: 1190 NSLSGHIPSCLNKIQFRTGFRSGKFSIISYFPSPGFSSYLYHSQHIELSQVNVNSYPIAY 1249

Query: 851  ---IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG 907
               + EFTTKN    Y+G  L  + G+DLS NKL G IPP+IGNL+++  LNLSHN LTG
Sbjct: 1250 DKAMAEFTTKNRTDFYKGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQVHALNLSHNILTG 1309

Query: 908  TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATF 967
             IP  FS L+ IESLDLSYN L+G IP +L +L  LA+F VAYNNLSGKIPE TAQF TF
Sbjct: 1310 PIPAAFSGLKSIESLDLSYNNLTGTIPGELTELTNLAVFSVAYNNLSGKIPEMTAQFGTF 1369

Query: 968  NKSSYDGNPFLCG-LPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGI 1026
             ++SY GNP+LCG L    C      +E     +G   L D D F+++F  SYV+V+ G+
Sbjct: 1370 LENSYVGNPYLCGSLLRKNCSRAEEEAEIEEGEKG---LTDRDIFYVSFGASYVVVLLGV 1426

Query: 1027 VVVLYVNPYWRRRWLYLVEMWITSCYYFVI 1056
              VLY+N  WR++W +++++ IT C  FV+
Sbjct: 1427 AAVLYINGGWRKKWFHVIDVLITCCCNFVM 1456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073382|ref|XP_002304087.1| predicted protein [Populus trichocarpa] gi|222841519|gb|EEE79066.1| predicted protein [Populus trichocarpa]

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 423/1112 (38%), Positives = 601/1112 (54%), Gaps = 89/1112 (8%)

Query: 1    MLDLSGNAFNNNVLSSLARLSS-LRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKID 59
             LDLS N       S L + ++ L  LYLS N + G++ +++      + ELDI  N + 
Sbjct: 220  FLDLSHNNITGMFPSWLLKNNTRLEQLYLSGNSIVGTLQLQD-HPYPKMTELDISNNNMS 278

Query: 60   KFMVSKGLS----KLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLE 115
               + K +      L  L ++  GF G        + ++L VLD+S N++  +       
Sbjct: 279  G-QIPKDICLIFPNLDGLRMAKNGFTGCIP-SCLGNMSSLGVLDLSNNQLSTV------- 329

Query: 116  RLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSID------------- 162
            +L  L+ +  L L  N     I +S+   S+   L+L  N   G I              
Sbjct: 330  KLELLTTIWFLKLSNNNLGGQIPTSMFNSSTSEYLYLGDNNFWGQISDSPLNGWKTWIVL 389

Query: 163  -----------AKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 211
                        + F + +NL  +D++ N  +       +  L +L+ LDLS   +    
Sbjct: 390  DLSNNQFSGILPRWFVNSTNLIAIDLSKNHFEGPISRHFFCKLDQLEYLDLSENNLFG-- 447

Query: 212  KLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF 271
              + S  + P +  +HL  N  +  L    E +N ++L  + L D+S   S+   +G++ 
Sbjct: 448  -YIPSCFNSPQITHVHLSKNRLSGPLK--YEFYNSSSLVTMDLRDNSFTGSIPNWVGNLS 504

Query: 272  PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSL 331
                 L  +              H    + L MR  ++         +  S+ S+     
Sbjct: 505  SLSVLLLRAN-------------HLDGFQLLPMRLGKLENLCLGGNQLNSSILSILSGLS 551

Query: 332  SGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGS 391
            S  +L  +++     G C + +L++L +  N+  GSLP CL N +SL++LD+S NQ TG+
Sbjct: 552  SLKSLDLSNNMFTGSGWCEMKNLKQLDLSGNNFGGSLPDCLGNLSSLQLLDISENQFTGN 611

Query: 392  ISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPK 451
            I+ SPL +L S+E L LSNN F +P S++P  NHS LK F  +NN +  E      L PK
Sbjct: 612  IAFSPLTNLISLEFLSLSNNLFEVPTSMKPFMNHSSLKFFCNENNRLVIEPAAFDHLIPK 671

Query: 452  FQLKSLSLS-SNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV 510
            FQL   SLS +    +V  P FLY+Q+ L+  +LSH  + G FP+WLL+NNT+LE LYL 
Sbjct: 672  FQLVFFSLSKTTEALNVEIPNFLYYQYHLRFLDLSHNNITGMFPSWLLKNNTRLEQLYLS 731

Query: 511  NDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSS 570
             +S+ G  +L  H + ++  LD+SNNN  G IP +I  I P+L    ++ N   G IPS 
Sbjct: 732  GNSIVGTLQLQDHPYPKMTELDISNNNMSGQIPKDICLIFPNLDGLRMAKNGFTGCIPSC 791

Query: 571  FGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLL 630
             GN+  L  LDLSNN+L+    + L      + FL LSNN+L G I + +F+     +L 
Sbjct: 792  LGNMSSLGVLDLSNNQLSTVKLELLTT----IWFLKLSNNNLGGQIPTSMFNSSTSEYLY 847

Query: 631  LEGNHFVGEIPQS-LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP 689
            L  N+F G+I  S L+   +   L L+NN  SG +PRW  N   L  I + KNH EGPI 
Sbjct: 848  LGDNNFWGQISDSPLNGWKTWIVLDLSNNQFSGILPRWFVNSTNLIAIDLSKNHFEGPIS 907

Query: 690  VEF-CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT 748
              F C+LD L+ LD+S+NN+ G +PSCF    I  VHLSKN L G LK   F+N SSLVT
Sbjct: 908  RHFFCKLDQLEYLDLSENNLFGYIPSCFNSPQITHVHLSKNRLSGPLKY-EFYNSSSLVT 966

Query: 749  LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 808
            +DL  N   GSIP+W+  LS LS L L  N+L+GE+P+QLC L QL +LD+S N L G +
Sbjct: 967  MDLRDNSFTGSIPNWVGNLSSLSVLLLRANHLDGELPVQLCLLEQLSILDVSQNQLSGPL 1026

Query: 809  PSCFDNTTLHESYNNNSS-------PDKPFKTSFSISGP----------QGSVEKKILEI 851
            PSC +N T  ES             P    K    I GP          +G       E+
Sbjct: 1027 PSCLENLTFKESSQKALMNLGGFLLPGFIEKAYNEIMGPPQVNSIYTLLKGYWPNFTEEV 1086

Query: 852  FEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL 911
             EFTTKN+ Y Y+G++LS ++G+DLS N  VG IPP+ GNL+ I +LNLSHNNLTG+IP 
Sbjct: 1087 IEFTTKNMYYGYKGKILSYMSGIDLSDNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPA 1146

Query: 912  TFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSS 971
            TFSNL+ IESLDLSYN  +G IP QL ++ TL +F VA+NNLSGK PE   QF TF++S 
Sbjct: 1147 TFSNLKRIESLDLSYNNFNGDIPPQLTEMTTLEVFSVAHNNLSGKTPERKYQFGTFDESC 1206

Query: 972  YDGNPFLCGLPL------PICRSLATMSEASTSNEG-DDNLIDMDSFFITFTISYVIVIF 1024
            Y+GNPFLCG PL       +  S   +S+   ++E  DD  IDM+ F+I+F++ Y +V+ 
Sbjct: 1207 YEGNPFLCGPPLRNNCSEEVVLSQPVLSQPVPNDEQEDDGFIDMEFFYISFSVCYTVVVM 1266

Query: 1025 GIVVVLYVNPYWRRRWLYLVEMWITSCYYFVI 1056
             I  VLY+NPYWRRRWLY +E  I +CYYFV+
Sbjct: 1267 TIAAVLYINPYWRRRWLYFIEDCIDTCYYFVV 1298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 364/819 (44%), Positives = 492/819 (60%), Gaps = 40/819 (4%)

Query: 262  SLLQSIGSIFPSLKNLSMSGCEVNGVLSGQG-FPHFKSLEHLDMRFARIALNTSFLQIIG 320
            S+L        +LK+L +S    NG+ +G G F +  +LE L +    + +N  FLQ IG
Sbjct: 140  SILSCFNGNLSTLKSLDLSA---NGLTAGSGTFFNSSTLEELYLDNTSLRIN--FLQNIG 194

Query: 321  ESMPSLKYLSLSGSTL-GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLR 379
             ++P+LK LS++   L GT    +  QG C L +L++L +  N+  GSLP CL N +SL+
Sbjct: 195  -ALPALKVLSVAECDLHGT----LPAQGWCELKNLKQLDLARNNFGGSLPDCLGNLSSLQ 249

Query: 380  ILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEIN 439
            +LDVS NQ TG+ +S PL +L S+E L LSNN F +P+S++P  NHS LK F ++NN + 
Sbjct: 250  LLDVSENQFTGNFTSGPLTNLISLEFLLLSNNLFEVPISMKPFLNHSSLKFFSSENNRLV 309

Query: 440  GEINESHSLTPKFQLKSLSLSSNYGDSV--TFPKFLYHQHELKEAELSHIKMIGEFPNWL 497
             E     +L PKFQL    LSS+         P FLY+Q +L+  +LSH  + G FP+WL
Sbjct: 310  TEPVAFDNLIPKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITGMFPSWL 369

Query: 498  LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 557
            L+NNT+LE LYL  +   G  +L  H +  +  LD+SNNN  G I  +I  I P+L    
Sbjct: 370  LKNNTRLEQLYLSANFFVGTLQLQDHPYSNMVELDISNNNMSGQISKDICLIFPNLWTLR 429

Query: 558  ISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF 617
            ++ N   G IPS  GN+  L FLDLSNN+L+    + L      +  L LSNNSL G I 
Sbjct: 430  MAKNGFTGCIPSCLGNISSLLFLDLSNNQLSTVQLEQLT-----IPVLKLSNNSLGGQIP 484

Query: 618  SRIFSLRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 676
            + +F+    ++L L GN+F G+I    L     L  L L+NN  SG +PR   N   L+ 
Sbjct: 485  TSVFNSSTSQFLYLNGNNFSGQISDFPLYGWKELNVLDLSNNQFSGMLPRIFVNFTDLRV 544

Query: 677  IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLK 736
            + + KNH +GPIP +FC+L  LQ LD+S+NN+SG +PSCF P  +  VHLSKN L G L 
Sbjct: 545  LDLSKNHYKGPIPKDFCKLGRLQYLDLSENNLSGYIPSCFSPPPLTHVHLSKNRLSGPLT 604

Query: 737  EGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQL 796
             G FFN S LVT+DL  N L GSIP+WI   S LS L L  N+ +GE+P+QLC L QL +
Sbjct: 605  YG-FFNSSYLVTMDLRDNSLTGSIPNWIGNHSSLSVLLLRANHFDGELPVQLCLLEQLSI 663

Query: 797  LDLSDNNLHGLIPSCFDNTTLHESYNNNSSP-------DKPFKTSFSISGPQGSVEKKIL 849
            LD+S N L G +PSC  N T  ES              +   K  +   GP       +L
Sbjct: 664  LDVSQNQLSGPLPSCLGNLTFKESSQKARMDLGASIVLESMEKAYYKTMGPPLVDSVYLL 723

Query: 850  ----------EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN 899
                      E+ EF TKN+ Y Y+G +LS ++G+DLS N   G IP + GNL+ I++LN
Sbjct: 724  GKDFRLNFTEEVIEFRTKNMYYGYKGNILSYMSGIDLSNNNFGGAIPQEFGNLSEIRSLN 783

Query: 900  LSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 959
            LSHNN T +IP TFSNL+ IESLDLSYN L+G IP QL ++ TL +F VA+NNLSG  PE
Sbjct: 784  LSHNNPTESIPATFSNLKQIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGWTPE 843

Query: 960  WTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSN--EGDDNLIDMDSFFITFTI 1017
               QF TF++S Y+GNPFLCG PL    S+  +S     +  +GD   IDM+ F+I+F +
Sbjct: 844  RKYQFGTFDESCYEGNPFLCGPPLRNNCSVEPVSSQPVPDDEQGDVGFIDMEFFYISFGV 903

Query: 1018 SYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVI 1056
             Y +V+  I  VLY+NPYWRRRWLY +E  I +CYYF++
Sbjct: 904  CYTVVVMTIAAVLYINPYWRRRWLYFIEDCIDTCYYFMV 942

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  603 bits (1556), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 370/826 (44%), Positives = 501/826 (60%), Gaps = 30/826 (3%)

Query: 249  LEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQG-FPHFKSLEHLDMRFA 307
            LE L L  +  + S+  S+   F SLK+L +S   + G  S  G F +  +LE L +  +
Sbjct: 192  LENLHLRGNQYNDSIFSSLTG-FSSLKSLDLSYNMLTGSTSINGTFFNSTTLEELYLDGS 250

Query: 308  RIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGS 367
             + LN  FL  IG  +P+LK LS     L   +  +  QGLC L +L++L++  N+L GS
Sbjct: 251  SLPLN--FLHNIG-VLPALKVLSAGECDL---NGTLPAQGLCGLKNLEQLFLSENNLEGS 304

Query: 368  LPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSK 427
            LP C  N +SL++LDVS NQ  G+I+SSPL +L S+E + LSNNHF++P+S++P  NHS 
Sbjct: 305  LPDCFKNLSSLQLLDVSRNQFIGNIASSPLTNLLSLEFISLSNNHFQVPISMKPFMNHSS 364

Query: 428  LKIFDAKNNEINGEINESHSLTPKFQLK--SLSLSSNYGDSVTFPKFLYHQHELKEAELS 485
            L+ F + NN +  E    H L PKFQL   SLS SS+   +V  P FLY+QH+L+  +LS
Sbjct: 365  LRFFSSDNNRLVTEPMSFHDLIPKFQLVFFSLSKSSSEALNVETPSFLYNQHDLRVLDLS 424

Query: 486  HIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE 545
                IG FP+WLL+NNT+LE L+L  +S  G  +L  H +  +  +D+SNNN  G IP  
Sbjct: 425  QNSFIGMFPSWLLKNNTRLEQLFLNENSFFGTLQLQDHPNPDMTAIDISNNNMHGEIPKN 484

Query: 546  IGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL 605
            I  I  +L    ++ N L G IPS  GN   L  LDLSNN+L+    +      + L FL
Sbjct: 485  ICLIFSNLWTLRMAKNGLTGCIPSCLGNSSSLGVLDLSNNQLSMVELEQF----ITLTFL 540

Query: 606  SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSL-KGLYLNNNNLSGKI 664
             LSNN+L G + + + +   L +L L  N+F G+I    S   ++   L L+NN  SG +
Sbjct: 541  KLSNNNLGGQLPASMVNSSRLNYLYLSDNNFWGQISDFPSPIKTIWPVLDLSNNQFSGML 600

Query: 665  PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQV 724
            PRW  NL  +  I + KNH  GPIPVEFC+LD L+ LD+SDNN+  S+PSCF P  I  V
Sbjct: 601  PRWFVNLTQIFAIDLSKNHFNGPIPVEFCKLDELKYLDLSDNNLFDSIPSCFNPPHITHV 660

Query: 725  HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 784
            HLSKN L G L  G F+N SSLVTLDL  N   GSI +WI  LS LS L L  NN +GE 
Sbjct: 661  HLSKNRLSGPLTYG-FYNSSSLVTLDLRDNNFTGSISNWIGNLSSLSVLLLRANNFDGEF 719

Query: 785  PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN---------NSSP-DKPFKTS 834
             +QLC L QL +LD+S N L G +PSC  N +  ESY            S+P +K +   
Sbjct: 720  LVQLCLLEQLSILDVSQNQLSGPLPSCLGNLSFKESYEKASVDFGFHFGSTPIEKAYYEF 779

Query: 835  FSISGPQGSVEKKIL--EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNL 892
                   GS    I   E+ EFT K++ Y Y+G++LS ++G+DLS NK  G IPP++GNL
Sbjct: 780  NQTRALLGSSYIPITTEEVIEFTAKSMYYGYKGKILSFMSGIDLSSNKFSGAIPPELGNL 839

Query: 893  TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 952
            + +  LNLSHNNLTG+IP TFSNL+ IES DLSYN L G IP +L ++ TL +F VA+NN
Sbjct: 840  SELLALNLSHNNLTGSIPATFSNLKQIESFDLSYNNLDGVIPHKLYEITTLEVFSVAHNN 899

Query: 953  LSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP-ICRSLATMS-EASTSNEGDDNLIDMDS 1010
            LSG+ PE   QF TF++SSY+GNPFLCG PL   C    + S       + DD  IDM+ 
Sbjct: 900  LSGETPERKYQFGTFDESSYEGNPFLCGPPLQNNCSEEESPSLPMPNDKQEDDGFIDMNF 959

Query: 1011 FFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVI 1056
            F+I+  + Y++V+ GI  VLY+NPYWR  W   ++  I +C+ F++
Sbjct: 960  FYISLGVGYIVVVMGIAAVLYINPYWRCGWFNFIDYCIDTCFNFLL 1005

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1066
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.823	0.878	0.341	3.1e-123
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.649	0.638	0.362	2.9e-114
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.757	0.906	0.334	3.9e-99
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.778	0.850	0.331	8.2e-99
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.805	0.946	0.322	4.2e-95
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.742	0.847	0.324	3.6e-89
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.803	0.887	0.294	2.1e-86
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.757	0.644	0.284	1.2e-65
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.613	0.806	0.293	5.8e-60
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.575	0.523	0.306	6.4e-59

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1188 (423.3 bits), Expect = 3.1e-123, Sum P(2) = 3.1e-123
 Identities = 317/929 (34%), Positives = 476/929 (51%)

Query:   164 KEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSL 223
             K    L NLE LD++ +  +N  +         L +L L+   +     L++      +L
Sbjct:    66 KSLSRLRNLEILDLSSHRFNN-SIFPFLNAATSLTTLFLTYNNMHSPF-LVKEFKDLTNL 123

Query:   224 NTLHLESNNFTATLTTTQ--ELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 281
               L L  N F  ++ T     L  F  LE L L D+  +  +   + S   SLK+LS+ G
Sbjct:   124 EHLDLRGNRFNGSIPTQDYNSLRRFRKLEILDLSDNLFNSRIFPFLNSA-TSLKSLSLWG 182

Query:   282 CEVNGVLSGQGFPHFKSLEHLDM---RF-ARIALNTSFL--QIIGESMPXXXXXXXXXXX 335
               + G    +      ++E LD+   RF   I +   F   ++    +            
Sbjct:   183 NNMGGPFPAKELRDLTNVELLDLSRNRFNGSIPVRALFALRKLKALDLSDNEFSSSVELQ 242

Query:   336 XXXXXXRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSS 395
                   + L  G CP  +++EL + NN L G  P CL + T LR+LD+S NQLTG++ S+
Sbjct:   243 GKFAKTKPLS-GTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSA 301

Query:   396 PLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF--DAKNNEINGEINESHSLTPKFQ 453
              L +L S+E L L  N+F    SL  L N SKLK+   D+++N +  E+    S  PKFQ
Sbjct:   302 -LANLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSL--EVEFETSWKPKFQ 358

Query:   454 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDS 513
             L  ++L S   + V  P FL HQ +L   +LS  ++ G FP+WLLENNTKLE L L N+S
Sbjct:   359 LVVIALRSCNLEKV--PHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNS 416

Query:   514 LAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE-IGDILPSLVYFNISMNALDGSIPSSFG 572
                 F+LP  +H  L FL+VS N F  H+ ++  G ILP LV  N++ N   G++PSS  
Sbjct:   417 FTS-FQLPKSAHNLL-FLNVSVNKFN-HLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLD 473

Query:   573 NVIFLQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLL-L 631
             N+  ++FLDLS+N+  G++P      C              G +F    +   L W++ +
Sbjct:   474 NMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRL-WVMSM 532

Query:   632 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE 691
             + N F G I +      SL  L ++NN L+G IP W+G  +GL  + +  N LEG IP  
Sbjct:   533 DNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTS 592

Query:   692 FCRLDSLQILDISDNNISGSLP---SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT 748
                +  LQ+LD+S N +SG +P   S  Y  ++  + L  N L G + +    N   ++ 
Sbjct:   593 LFNISYLQLLDLSSNRLSGDIPPHVSSIYHGAV--LLLQNNNLSGVIPDTLLLN---VIV 647

Query:   749 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLI 808
             LDL  N L+G++P++I+    +S L L  NN  G++P                   +G I
Sbjct:   648 LDLRNNRLSGNLPEFIN-TQNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSI 706

Query:   809 PSCFDNTTL-----HESYNNN------SSPDKPFKTSFSISGPQGSVEKKILEI-FEFTT 856
             PSC  NT+       +SY  +      ++ D  +  S  +      V +   +   EF T
Sbjct:   707 PSCLSNTSFGLRKGDDSYRYDVPSRFGTAKDPVYFESLLMIDEFNMVNETNSQTKIEFAT 766

Query:   857 KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 916
             K+   AY G  L LL G+DLS N+L G IP ++G L  ++ LNLSHNNL+G I  +FS L
Sbjct:   767 KHRYDAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGL 826

Query:   917 RHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNP 976
             +++ESLDLS+N+L G IP QL D+ +LA+F V+YNNLSG +P+   QF TF   SY GNP
Sbjct:   827 KNVESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGR-QFNTFETQSYFGNP 885

Query:   977 FLCGLPLPICRSLATMSEASTSN--EGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNP 1034
              LCG  + I  S A+ +   T N  E D++ +DM+SF+ +F  +YV ++ GI+  L  + 
Sbjct:   886 LLCGKSIDI--SCASNNFHPTDNGVEADESTVDMESFYWSFVAAYVTILLGILASLSFDS 943

Query:  1035 YWRRRWLYLVEMWITSCYYFVIDNLIPTR 1063
              W R W Y+V+ ++      +  N   T+
Sbjct:   944 PWSRAWFYIVDAFVLKVRNMLWQNTAGTK 972

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1039 (370.8 bits), Expect = 2.9e-114, Sum P(2) = 2.9e-114
 Identities = 264/728 (36%), Positives = 382/728 (52%)

Query:   347 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI-EE 405
             G+C L  L+EL + +N L  SLP+CL N T LR LD+S NQL G++SS  +  L S+ E 
Sbjct:   353 GICRLMKLRELDLSSNALT-SLPYCLGNLTHLRTLDLSNNQLNGNLSSF-VSGLPSVLEY 410

Query:   406 LRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGD 465
             L L +N+F        L N ++L +F   +     ++    S  P FQLK L LS N   
Sbjct:   411 LSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQLKMLYLS-NCSL 469

Query:   466 SVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSH 525
               T   FL HQ +L   +LSH K+ G FP WL++NNT+L+ + L  +SL    +LPI  H
Sbjct:   470 GSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILVH 528

Query:   526 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 585
               L+ LD+S+N     I  +IG + P+L + N S N   G+IPSS G +  LQ LD+S+N
Sbjct:   529 G-LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSN 587

Query:   586 KLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 645
              L G++P      C             +G IFS+  +L  L  L L+GN+F G + + L 
Sbjct:   588 GLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLL 647

Query:   646 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS-LQILDIS 704
             K  +L  L +++N  SG +P W+G +  L ++ M  N L+GP P  F R    ++++DIS
Sbjct:   648 KSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFP--FLRQSPWVEVMDIS 705

Query:   705 DNNISGSLP-SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 763
              N+ SGS+P +  +P S++++ L  N   G L  G  F  + L  LDL  N  +G I + 
Sbjct:   706 HNSFSGSIPRNVNFP-SLRELRLQNNEFTG-LVPGNLFKAAGLEVLDLRNNNFSGKILNT 763

Query:   764 IDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTTLHESYNN 823
             ID  S+L  L L +N+ +  +P                    G IPSCF   +     N+
Sbjct:   764 IDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQND 823

Query:   824 NSS--------------PDKPFKTSFSIS-GPQGSVEKKILEIFEFTTKNIAYAYQGRVL 868
              +               P   + +  ++  G +   + K   + +F TK+   AYQG +L
Sbjct:   824 RTMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQGDIL 883

Query:   869 SLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK 928
               + GLDLS N+L G IP +IG+L  I++LNLS N LTG+IP + S L+ +ESLDLS NK
Sbjct:   884 RYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNK 943

Query:   929 LSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL-PICR 987
             L G IP  L DLN+L    ++YNNLSG+IP +     TF++ SY GN  LCGLP    C 
Sbjct:   944 LDGSIPPALADLNSLGYLNISYNNLSGEIP-FKGHLVTFDERSYIGNAHLCGLPTNKNCI 1002

Query:   988 SLATMSEASTS-------NEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRW 1040
             S       S S       NE + N+IDM  F+ T    Y+     +   LY++  W R W
Sbjct:  1003 SQRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRWSREW 1062

Query:  1041 LYLVEMWI 1048
              Y V++ +
Sbjct:  1063 FYRVDLCV 1070

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
 Identities = 286/854 (33%), Positives = 429/854 (50%)

Query:   220 FPSLNTLHLESNNFTATLTTTQE---LHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKN 276
             F  L +L+L S  F       +    L +  NLE L L  +    S+L  +     SLK 
Sbjct:    49 FEELQSLNLSSGYFKGWFDERKGGKGLGSLRNLETLDLGVNFYDTSVLPYLNEAV-SLKT 107

Query:   277 LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXX 336
             L +      G    Q   +  SLE LD++F + +      Q+  + +             
Sbjct:   108 LILHDNLFKGGFPVQELINLTSLEVLDLKFNKFSG-----QLPTQELTNLRNLRALDLSN 162

Query:   337 XXXXXRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 396
                   +  QG+C L  LQEL +  N   G +P C +  + LR+LD+S N L+G I    
Sbjct:   163 NKFSGSLQKQGICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYF- 221

Query:   397 LVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESH-SLTPKFQLK 455
             +    S+E L L +N F    SL  +   ++LK+F   +     +I E++ S   + QL 
Sbjct:   222 ISDFKSMEYLSLLDNDFEGLFSLGLITELTELKVFKLSSRSGMLQIVETNVSGGLQSQLS 281

Query:   456 SLSLSS-NYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL 514
             S+ LS  N G     P FL++Q EL+  +LS+  + G FP WLLENNT+L+ L L N+S 
Sbjct:   282 SIMLSHCNLGK---IPGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSF 338

Query:   515 AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNV 574
                  LP  + +RL+ LD+S NNF   +P ++G IL SL + N+S N   G++PSS   +
Sbjct:   339 K-TLTLP-RTMRRLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARM 396

Query:   575 IFLQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGN 634
               ++F+DLS N  +G++P +L   C              G I  +     +L  L+++ N
Sbjct:   397 ENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNN 456

Query:   635 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 694
              F G+IP++L     L  + L+NN L+G IPRWLGN   L+ + +  N L+G IP     
Sbjct:   457 MFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLGNFF-LEVLRISNNRLQGAIPPSLFN 515

Query:   695 LDSLQILDISDNNISGSLP---SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDL 751
             +  L +LD+S N +SGSLP   S  Y   I  +H   N L G + +  ++    L  LDL
Sbjct:   516 IPYLWLLDLSGNFLSGSLPLRSSSDYGY-ILDLH--NNNLTGSIPDTLWYG---LRLLDL 569

Query:   752 SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSC 811
               N L+G+IP        +S + L  NNL G++P+                  +  IPSC
Sbjct:   570 RNNKLSGNIP-LFRSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSC 628

Query:   812 FDNTTLHESYNNNSSPD-KP------FKTSFS-------ISGPQGSVEKKI-LEI-FEFT 855
               N +     ++N+  D  P      F   ++       I   + S++  +   +  EF 
Sbjct:   629 VTNLSFGSGGHSNADSDWYPASLLSNFMEIYTEVYYESLIVSDRFSLDYSVDFNVQVEFA 688

Query:   856 TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSN 915
              K     Y    L+ + GLDLS N+L G+IP ++G+L R+++LNLS N+L+G+IP +FSN
Sbjct:   689 VKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSN 748

Query:   916 LRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGN 975
             LR IESLDLS+NKL G IP QL  L +L +F V+YNNLSG IP+   QF TF + SY GN
Sbjct:   749 LRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQGK-QFNTFGEKSYLGN 807

Query:   976 PFLCGLPLPICRSLATMSEASTSNEGDDN-LIDMDSFFITFTISYVIVIFGIVVVLYVNP 1034
               LCG P        T+S      + D++ L+D+   + +   +YV V+ G +V L  + 
Sbjct:   808 FLLCGSPTKRSCGGTTISSGKEYEDDDESGLLDIVVLWWSLGTTYVTVMMGFLVFLCFDS 867

Query:  1035 YWRRRWLYLVEMWI 1048
              WRR W  LV+ +I
Sbjct:   868 PWRRAWFCLVDTFI 881

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
 Identities = 295/889 (33%), Positives = 435/889 (48%)

Query:   196 KLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLH------LESNNFTATLTTTQELHNFTNL 249
             +L+SL+LSG    + N L   +  + SL  L       L SN+F  ++     L+  T+L
Sbjct:   107 ELRSLNLSGEIYNEFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPF--LNAATSL 164

Query:   250 EYLTLDDS----SLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMR 305
               L +  +     L I  L+++  +   L +LS SG   NG +    F H + L+ LD+ 
Sbjct:   165 TTLFIQSNYIGGPLPIKELKNLTKL--ELLDLSRSG--YNGSIPE--FTHLEKLKALDLS 218

Query:   306 FARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRILDQGLCPLAHLQELYIDNNDLR 365
                 +   S +++  + +                   I  +  C + +L++L +  N   
Sbjct:   219 ANDFS---SLVEL--QELKVLTNLEVLGLAWNHLDGPIPKEVFCEMKNLRQLDLRGNYFE 273

Query:   366 GSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNH 425
             G LP CL N   LR+LD+S NQL+G++ +S    L S+E L LS+N+F    SL PL N 
Sbjct:   274 GQLPVCLGNLNKLRVLDLSSNQLSGNLPAS-FNSLESLEYLSLSDNNFEGFFSLNPLANL 332

Query:   426 SKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELS 485
             +KLK+F   +     ++    +  PKFQL   +L   +      P FL +Q  L+  +LS
Sbjct:   333 TKLKVFRLSSTSEMLQVETESNWLPKFQLTVAALP--FCSLGKIPNFLVYQTNLRLVDLS 390

Query:   486 HIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE 545
               ++ G+ P WLLENN +L+ L L N+S    F++P   HK L+ LD S N+  G +P  
Sbjct:   391 SNRLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIVHK-LQVLDFSANDITGVLPDN 448

Query:   546 IGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVXXXXX 605
             IG +LP L++ N S N   G++PSS G +  + FLDLS N  +GE+P  L   C      
Sbjct:   449 IGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCFSLITL 508

Query:   606 XXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP 665
                     G I      L +L  L +  N F GEI   L    +L     +NN L+G I 
Sbjct:   509 QLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLIS 568

Query:   666 RWLG-NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP--LSIK 722
               +  +   L  +++  N LEG +P     +  L  LD+S N +SG LPS        IK
Sbjct:   569 SSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIK 628

Query:   723 QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 782
              + L  N   G L      N      LDL  N L+GSIP +++   ++  L L  NNL G
Sbjct:   629 -IFLHNNSFTGPLPVTLLENA---YILDLRNNKLSGSIPQFVN-TGKMITLLLRGNNLTG 683

Query:   783 EVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDN--TTLHESYN-NNSSPDKPFKTSFSISG 839
              +P                   +G+IP C ++  T L E    +  S +  F  S  +  
Sbjct:   684 SIPRKLCDLTSIRLLDLSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQEISFGDSLQMEF 743

Query:   840 PQGS--VEK---------KILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ 888
              + +  V++          I+EI EF  K    ++ G  L  + GLDLS N+L G IP +
Sbjct:   744 YRSTFLVDEFMLYYDSTYMIVEI-EFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAE 802

Query:   889 IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 948
             +G+L++++ LNLS N L+ +IP  FS L+ IESLDLSYN L G IP QL +L +LA+F V
Sbjct:   803 LGDLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNV 862

Query:   949 AYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP-ICRSLATMSEASTSNE------G 1001
             ++NNLSG IP+   QF TFN +SY GNP LCG P    C       EA    E       
Sbjct:   863 SFNNLSGIIPQG-GQFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEEDDD 921

Query:  1002 DDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITS 1050
             D+  IDM   + T   +Y I + GI+V++  +  WRR WL +V+ +I S
Sbjct:   922 DEAAIDMVVLYWTTGSTYAIALIGILVLMCFDCPWRRTWLCIVDAFIAS 970

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
 Identities = 288/894 (32%), Positives = 428/894 (47%)

Query:   165 EFDSLSNLEELDINDN--EIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN-KLLQSMGSFP 221
             E+DS+      D   +  + +N++ +R  R L  L       + I   N  LL       
Sbjct:    36 EYDSVLPTWTNDTKSDCCQWENIKCNRTSRRLTGLSLYTSYYLEISLLNLSLLHPFEEVR 95

Query:   222 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 281
             SL+  +   N     +   + L    NL+ L    +  + S+   + +   SL  LS+  
Sbjct:    96 SLDLSNSRLNGLVDDVEGYKSLRRLRNLQILNFSSNEFNNSIFPFLNAA-TSLTTLSLRR 154

Query:   282 CEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXX 341
               + G +  +   +  +LE LD+   RI      + +     P                 
Sbjct:   155 NNMYGPIPLKELKNLTNLELLDLSGNRI---DGSMPV--REFPYLKKLKALDLSSNGIYS 209

Query:   342 RILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLT 401
              +  Q  C + +LQEL +   +  G LP C  N   LR LD+S NQLTG+I  S    L 
Sbjct:   210 SMEWQVFCEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPS-FSSLE 268

Query:   402 SIEELRLSNNHFRIPVSLEPLFNHSKLK--IFDAKNNEINGEINESHSLTPKFQLKSLSL 459
             S+E L LS+N F    SL PL N +KLK  IF +K++ +  +I ES +  P FQL  L L
Sbjct:   269 SLEYLSLSDNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQVKI-ES-TWQPLFQLSVLVL 326

Query:   460 SSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFR 519
                  + +  P FL +Q  L   +LS  ++ G  P WLLENN +LE L L N+S    F+
Sbjct:   327 RLCSLEKI--PNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQ 383

Query:   520 LPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQF 579
             +P   H  L+ LD S NN  G  P   G +LP+LV+ N S N   G+ PSS G +  + F
Sbjct:   384 MPTSVHN-LQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISF 442

Query:   580 LDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGE 639
             LDLS N L+GE+P      C              GH   R  +  +L  L +  N F G+
Sbjct:   443 LDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGK 502

Query:   640 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 699
             I   L     L  L ++NN L G++P  L   + L  + +  N L G +P     LD+  
Sbjct:   503 IGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALP-SHVSLDN-- 559

Query:   700 ILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 759
             +L + +NN +G +P  F   SI+ + L  N L G + +  F +   +  L L  N L G 
Sbjct:   560 VLFLHNNNFTGPIPDTFLG-SIQILDLRNNKLSGNIPQ--FVDTQDISFLLLRGNSLTGY 616

Query:   760 IPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTTLHE 819
             IP  +   S++  L+L+ N L G +P                   +  +    ++  L  
Sbjct:   617 IPSTLCEFSKMRLLDLSDNKLNGFIPSCFNNLSFGLARKEEITNYY--VAVALESFYL-- 672

Query:   820 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCN 879
              +  ++   + F+  +S       ++ K      + +   A+ +    L+ + GLDLS N
Sbjct:   673 GFYKSTFVVENFRLDYS---NYFEIDVKFATKQRYDSYIGAFQFSEGTLNSMYGLDLSSN 729

Query:   880 KLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVD 939
             +L G IP ++G+L +++ LNLSHN L+  IP +FS L+ IESLDLSYN L G IP QL +
Sbjct:   730 ELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTN 789

Query:   940 LNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPI-CRSLATMSEASTS 998
             L +LAIF V+YNNLSG IP+   QF TF+++SY GNP LCG P    C +     E +  
Sbjct:   790 LTSLAIFNVSYNNLSGIIPQGK-QFNTFDENSYLGNPLLCGPPTDTSCETKKNSEENANG 848

Query:   999 NEGDDN--LIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITS 1050
              E DD    IDM  F+ +   +YV  + GI+V++ V+  WRR WL LV+ +I S
Sbjct:   849 GEEDDKEVAIDMLVFYWSTAGTYVTALIGILVLMCVDCSWRRAWLRLVDAFIAS 902

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
 Identities = 277/854 (32%), Positives = 405/854 (47%)

Query:   229 ESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVL 288
             E N F   +   + L    NL+ + L  +  + S    + +   SL  L ++  E++G  
Sbjct:   106 EFNGFFDDVEGYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAA-TSLTTLILTYNEMDGPF 164

Query:   289 SGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRILDQGL 348
               +G     +LE LD+R  +  LN S  ++I                          Q L
Sbjct:   165 PIKGLKDLTNLELLDLRANK--LNGSMQELIHLKKLKALDLSSNKFSSSMEL-----QEL 217

Query:   349 CPLAHLQELYIDNNDLRGSLPW-CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 407
               L +L+ L +  N + G +P        +LR LD+  N   G I   PL  L S+++LR
Sbjct:   218 QNLINLEVLGLAQNHVDGPIPIEVFCKLKNLRDLDLKGNHFVGQI---PLC-LGSLKKLR 273

Query:   408 ---LSNNHFR--IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLS--LS 460
                LS+N     +P S   L     L+     +N  +G    S SL P   L +L   + 
Sbjct:   274 VLDLSSNQLSGDLPSSFSSL---ESLEYLSLSDNNFDG----SFSLNPLTNLTNLKFVVV 326

Query:   461 SNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRL 520
               +      P FL +Q +L+  +LS   + G  P WLL NN +LE L L N+S    F +
Sbjct:   327 LRFCSLEKIPSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFT-IFPI 385

Query:   521 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL 580
             P   H  L+  D S NN  G  P ++   LP+LV  N S N   G  P+S G +  + FL
Sbjct:   386 PTMVHN-LQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFL 443

Query:   581 DLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEI 640
             DLS N  +G++P      CV             G    R  +  +L  L ++ N F G I
Sbjct:   444 DLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNI 503

Query:   641 PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI 700
                LS  + L+ L ++NN LSG IPRWL     L ++++  N LEG IP     +  L  
Sbjct:   504 GGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSF 563

Query:   701 LDISDNNISGSLPSCF-YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 759
             LD+S N  SG+LPS     L I  + L  N   G + + T     S+  LDL  N L+GS
Sbjct:   564 LDLSGNQFSGALPSHVDSELGI-YMFLHNNNFTGPIPD-TLLK--SVQILDLRNNKLSGS 619

Query:   760 IPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTT--- 816
             IP + D    ++ L L  NNL G +P                   +G+IPSC  N +   
Sbjct:   620 IPQF-DDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGR 678

Query:   817 LHE---------SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFE--FTTKNIAYAYQG 865
             L E         S+   S   + +K++F +   +  V++   +  E  F  K    +Y G
Sbjct:   679 LQEDAMALNIPPSFLQTSLEMELYKSTFLVDKIE--VDRSTYQETEIKFAAKQRYDSYSG 736

Query:   866 R------VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 919
             R      +L L+ G+DLS N+L G IP ++G+L +++TLNLSHN+L G+IP +FS L  +
Sbjct:   737 RSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDV 796

Query:   920 ESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLC 979
             ESLDLS+N L G IP+ L  L +LA+F V+ NNLSG IP+   QF TF + SY GNP LC
Sbjct:   797 ESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQGR-QFNTFEEESYLGNPLLC 855

Query:   980 GLPLP-ICRSLATMSEASTSNEGDDN--LIDMDSFFITFTISYVIVIFGIVVVLYVNPYW 1036
             G P    C +  +  EA    E +D+   IDM  F+ +    YV  + G++V++  +  W
Sbjct:   856 GPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMVFYFSTASIYVTALIGVLVLMCFDCPW 915

Query:  1037 RRRWLYLVEMWITS 1050
             RR WL +V+ +I S
Sbjct:   916 RRAWLRIVDAFIAS 929

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 825 (295.5 bits), Expect = 2.1e-86, Sum P(2) = 2.1e-86
 Identities = 262/890 (29%), Positives = 421/890 (47%)

Query:   175 LDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT 234
             L + DN + N+ +   +  +R L        G+ D  +  +S+     L  L L SN F 
Sbjct:    86 LSLKDNSLLNLSLLHPFEDVRSLNLSSSRCSGLFDDVEGYKSLRKLRKLEILDLASNKFN 145

Query:   235 ATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFP 294
              ++     L   T+L  L L  +++  S          +L+ L +S    NG +  Q   
Sbjct:   146 NSIF--HFLSAATSLTTLFLRSNNMDGSFPAKELRDLTNLELLDLSRNRFNGSIPIQELS 203

Query:   295 HFKSLEHLDM---RFA-RIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRI---LDQG 347
               + L+ LD+    F+  + L   F   +  S+                  ++   L   
Sbjct:   204 SLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSGICELNNMQELDLSQNKLVGHLPSC 263

Query:   348 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 407
             L  L  L+ L + +N L G++P  L +  SL  L +  N   GS S   L +L+++  L+
Sbjct:   264 LTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLK 323

Query:   408 LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 467
             L +    + V  E  +   K ++        N E    H L  +  L+ + LS N   S 
Sbjct:   324 LCSKSSSLQVLSESSWK-PKFQLSVIALRSCNME-KVPHFLLHQKDLRHVDLSDN-NISG 380

Query:   468 TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL-VND-SLAGPFRLP-IHS 524
               P +L   +   +  L    +   F   + ++   L FL +  ND +   P  +  I  
Sbjct:   381 KLPSWLLANNTKLKVLLLQNNLFTSFQ--IPKSAHNLLFLDVSANDFNHLFPENIGWIFP 438

Query:   525 HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF-LQFLDLS 583
             H  LR+L+ S NNFQ ++P  +G+ +  + Y ++S N+  G++P SF N  + +  L LS
Sbjct:   439 H--LRYLNTSKNNFQENLPSSLGN-MNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLS 495

Query:   584 NNKLTGEI-PDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ 642
             +NKL+GEI P+      +             G I   + SL NL  L +  N+  G IP 
Sbjct:   496 HNKLSGEIFPESTNFTNILGLFMDNNLFT--GKIGQGLRSLINLELLDMSNNNLTGVIPS 553

Query:   643 SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILD 702
              + +  SL  L +++N L G IP  L N   LQ + +  N L G IP +    + + +L 
Sbjct:   554 WIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLL- 612

Query:   703 ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD 762
             + DN +SG++P      +++ + L  N   G++ E  F N  ++  L L  N   G IP 
Sbjct:   613 LQDNKLSGTIPDTLLA-NVEILDLRNNRFSGKIPE--FINIQNISILLLRGNNFTGQIPH 669

Query:   763 WIDGLSQLSHLNLAHNNLEGEVP-IXXXXXXXXXXXXXXXXXXHGL-IPS-CFDNTTLHE 819
              + GLS +  L+L++N L G +P                     G+  PS  F+  +LH+
Sbjct:   670 QLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYDFGISFPSDVFNGFSLHQ 729

Query:   820 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEI-FEFTTKNIAYAYQGRVLSLLAGLDLSC 878
              +++N +    FK+  ++  P     K   +   EF TK+   AY G  L LL G+DLS 
Sbjct:   730 DFSSNKNGGIYFKSLLTLD-PLSMDYKAATQTKIEFATKHRYDAYMGGNLKLLFGMDLSE 788

Query:   879 NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV 938
             N+L G IP + G L  ++ LNLSHNNL+G IP + S++  +ES DLS+N+L G+IP QL 
Sbjct:   789 NELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQLT 848

Query:   939 DLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTS 998
             +L +L++F V++NNLSG IP+   QF TF+  SY GN  LCG P     +  +  EA   
Sbjct:   849 ELTSLSVFKVSHNNLSGVIPQGR-QFNTFDAESYFGNRLLCGQPTNRSCNNNSYEEADNG 907

Query:   999 NEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWI 1048
              E D+++IDM SF+++F  +YV ++ GI+  L  +  W R W Y V+ +I
Sbjct:   908 VEADESIIDMVSFYLSFAAAYVTILIGILASLSFDSPWSRFWFYKVDAFI 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 687 (246.9 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 243/854 (28%), Positives = 393/854 (46%)

Query:   193 GLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTN-LEY 251
             G R++  L+LSG+G+     +  S+G F +L  + L SN     + TT  L N ++ LE 
Sbjct:    69 GGREIIGLNLSGLGLT--GSISPSIGRFNNLIHIDLSSNRLVGPIPTT--LSNLSSSLES 124

Query:   252 LTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM------- 304
             L L  + L   +   +GS+  +LK+L +   E+NG +  + F +  +L+ L +       
Sbjct:   125 LHLFSNLLSGDIPSQLGSLV-NLKSLKLGDNELNGTIP-ETFGNLVNLQMLALASCRLTG 182

Query:   305 ----RFARIA-LNTSFLQI--IGESMPXXXXXXXXXXXXXXXXXRI---LDQGLCPLAHL 354
                 RF R+  L T  LQ   +   +P                 R+   L   L  L +L
Sbjct:   183 LIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNL 242

Query:   355 QELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 414
             Q L + +N   G +P  L +  S++ L++  NQL G I    L  L +++ L LS+N+  
Sbjct:   243 QTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKR-LTELANLQTLDLSSNNLT 301

Query:   415 IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLY 474
               V  E  +  ++L+      N ++G + ++   +    LK L LS     S   P  + 
Sbjct:   302 -GVIHEEFWRMNQLEFLVLAKNRLSGSLPKT-ICSNNTSLKQLFLSETQL-SGEIPAEIS 358

Query:   475 HQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVS 534
             +   LK  +LS+  + G+ P+ L +   +L  LYL N+SL G     I +   L+   + 
Sbjct:   359 NCQSLKLLDLSNNTLTGQIPDSLFQL-VELTNLYLNNNSLEGTLSSSISNLTNLQEFTLY 417

Query:   535 NNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDH 594
             +NN +G +P EIG  L  L    +  N   G +P   GN   LQ +D   N+L+GEIP  
Sbjct:   418 HNNLEGKVPKEIG-FLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSS 476

Query:   595 LAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLY 654
             +                  G+I + + +   +  + L  N   G IP S    ++L+   
Sbjct:   477 IGRL-KDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFM 535

Query:   655 LNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLP- 713
             + NN+L G +P  L NLK L  I    N   G I    C   S    D+++N   G +P 
Sbjct:   536 IYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSIS-PLCGSSSYLSFDVTENGFEGDIPL 594

Query:   714 SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHL 773
                   ++ ++ L KN   G++   TF   S L  LD+S N L+G IP  +    +L+H+
Sbjct:   595 ELGKSTNLDRLRLGKNQFTGRIPR-TFGKISELSLLDISRNSLSGIIPVELGLCKKLTHI 653

Query:   774 NLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPS-CFDNTTLHESYNNNSSPDKPFK 832
             +L +N L G +P                    G +P+  F  T +   + + +S      
Sbjct:   654 DLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNS------ 707

Query:   833 TSFSISGPQGSVEK-KILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGN 891
              + SI    G+++    L + E        +  G+ LS L  L LS N L G IP +IG 
Sbjct:   708 LNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGK-LSKLFELRLSRNALTGEIPVEIGQ 766

Query:   892 LTRIQT-LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAY 950
             L  +Q+ L+LS+NN TG IP T S L  +ESLDLS+N+L G++P Q+ D+ +L    ++Y
Sbjct:   767 LQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSY 826

Query:   951 NNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDS 1010
             NNL GK+ +   QF+ +   ++ GN  LCG PL  C    + ++ S S +    +  + S
Sbjct:   827 NNLEGKLKK---QFSRWQADAFVGNAGLCGSPLSHCNRAGSKNQRSLSPKTVVIISAISS 883

Query:  1011 FFITFTISYVIVIF 1024
                   +  VI++F
Sbjct:   884 LAAIALMVLVIILF 897

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 5.8e-60, P = 5.8e-60
 Identities = 204/694 (29%), Positives = 331/694 (47%)

Query:   362 NDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF--RIPVSL 419
             N   GS+P  L + T+L+ LD+S N + G++S   +  L +++EL L  N     IP  +
Sbjct:   140 NRFNGSIPHELFSLTNLQRLDLSRNVIGGTLSGD-IKELKNLQELILDENLIGGAIPSEI 198

Query:   420 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 479
               L    +L     + N  N  I  S S   K  LK++ L +N+  S   P  + +   L
Sbjct:   199 GSLV---ELLTLTLRQNMFNSSIPSSVSRLTK--LKTIDLQNNFLSS-KIPDDIGNLVNL 252

Query:   480 KEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDS-LAGPFRLP-IHSHKRLRFLDVSNNN 537
                 LS  K+ G  P+  + N   LE L L N++ L+G      +   ++L+ L +  NN
Sbjct:   253 STLSLSMNKLSGGIPS-SIHNLKNLETLQLENNNGLSGEIPAAWLFGLQKLKVLRLEGNN 311

Query:   538 -FQGHIPVEIGDILPSLVYFNISMNA--LDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDH 594
               Q +     G + P     ++S+ +  L+G+IP    N   L +LDLS N+L G  P  
Sbjct:   312 KLQWN---NNGYVFPQFKLTHLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGRFPKW 368

Query:   595 LAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLY 654
             LA   +             G +   +F   +L +L+L  N+F G+IP ++ + S +  L 
Sbjct:   369 LADLKIRNITLSDNRLT--GSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGE-SQVMVLM 425

Query:   655 LNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 714
             L+ NN SG +P+ +  +  L+ + + KN L G  P  F     L+ LDIS N  SG +P+
Sbjct:   426 LSENNFSGSVPKSITKIPFLKLLDLSKNRLSGEFP-RFRPESYLEWLDISSNEFSGDVPA 484

Query:   715 CFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ-LSHL 773
              ++  S   + +S+N   G+  +  F N S L+ LDL  N ++G++   I  LS  +  L
Sbjct:   485 -YFGGSTSMLLMSQNNFSGEFPQN-FRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVL 542

Query:   774 NLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTT-LHESYNNNSSPDKPFK 832
             +L +N+L+G +P                    G +PS   N T + +S   ++   +P+ 
Sbjct:   543 SLRNNSLKGSIPEGISNLTSLKVLDLSENNLDGYLPSSLGNLTCMIKSPEPSAMTIRPYF 602

Query:   833 TSFS-ISGPQGSVEKKILEIFEFTT--KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 889
             +S++ I   +  +E +  +IF      KN       R   L   LDLS NKL G IP  +
Sbjct:   603 SSYTDIPNIERLIEIESEDIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNKLHGEIPTSL 662

Query:   890 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 949
             GNL  ++ LNLS+N  +G IP +F +L  +ESLDLS+N L+G+IP+ L  L+ L    + 
Sbjct:   663 GNLKSLKVLNLSNNEFSGLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLR 722

Query:   950 YNNLSGKIPEWTAQFATFNKSS-YDGNPFLCGLPLPI-CRSLATMSEASTSNEGD----D 1003
              N L G+IPE + Q    N  + Y  N  +CG+ + + C    T   A    E D    +
Sbjct:   723 NNKLKGRIPE-SPQLDRLNNPNIYANNSGICGMQIQVPCFPTQTKQPAEEKEEEDKEEEE 781

Query:  1004 NLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWR 1037
              +   ++  I  +  ++I     VV +  N  W+
Sbjct:   782 TIFSWNAAAIGCSCGFLIA----VVFMSYNELWK 811

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 632 (227.5 bits), Expect = 6.4e-59, P = 6.4e-59
 Identities = 199/650 (30%), Positives = 297/650 (45%)

Query:   348 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 407
             +C  + L  +  D N+L G +P CL +   L++   + N LTGSI  S +  L ++ +L 
Sbjct:   164 ICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVS-IGTLANLTDLD 222

Query:   408 LSNNHF--RIPVSLEPLFNHSKLKIFD-AKNNEINGEINESHSLTPKFQLKSLSLSSNYG 464
             LS N    +IP     L N   L + +     +I  EI    SL  + +L    L+    
Sbjct:   223 LSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLV-QLELYDNQLTGK-- 279

Query:   465 DSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHS 524
                  P  L +  +L+   +   K+    P+ L    T+L  L L  + L GP    I  
Sbjct:   280 ----IPAELGNLVQLQALRIYKNKLTSSIPSSLFRL-TQLTHLGLSENHLVGPISEEIGF 334

Query:   525 HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN 584
              + L  L + +NNF G  P  I + L +L    +  N + G +P+  G +  L+ L   +
Sbjct:   335 LESLEVLTLHSNNFTGEFPQSITN-LRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHD 393

Query:   585 NKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSL 644
             N LTG IP  ++ C               G I  R F   NL ++ +  NHF GEIP  +
Sbjct:   394 NLLTGPIPSSISNC-TGLKLLDLSHNQMTGEI-PRGFGRMNLTFISIGRNHFTGEIPDDI 451

Query:   645 SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDIS 704
               CS+L+ L + +NNL+G +   +G L+ L+ + +  N L GPIP E   L  L IL + 
Sbjct:   452 FNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLH 511

Query:   705 DNNISGSLPSCFYPLSIKQ-VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 763
              N  +G +P     L++ Q + +  N L G + E   F+   L  LDLS N  +G IP  
Sbjct:   512 SNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPE-EMFDMKLLSVLDLSNNKFSGQIPAL 570

Query:   764 IDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIP----SCFDNTTLHE 819
                L  L++L+L  N   G +P                    G IP    +   N  L+ 
Sbjct:   571 FSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYL 630

Query:   820 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG---LDL 876
             +++NN        T  +I    G +E  + EI    + N+      R L        LD 
Sbjct:   631 NFSNN------LLTG-TIPKELGKLEM-VQEID--LSNNLFSGSIPRSLQACKNVFTLDF 680

Query:   877 SCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 935
             S N L GHIP ++   +  I +LNLS N+ +G IP +F N+ H+ SLDLS N L+G+IP 
Sbjct:   681 SQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPE 740

Query:   936 QLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPI 985
              L +L+TL    +A NNL G +PE +  F   N S   GN  LCG   P+
Sbjct:   741 SLANLSTLKHLKLASNNLKGHVPE-SGVFKNINASDLMGNTDLCGSKKPL 789

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1066
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-63
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-54
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-46
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-22
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-08
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  233 bits (595), Expect = 2e-63
 Identities = 193/619 (31%), Positives = 294/619 (47%), Gaps = 98/619 (15%)

Query: 378 LRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNE 437
           ++ +++S NQL+G I        +S+  L LSNN+F   +    + N   L+  D  NN 
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLDLSNNM 151

Query: 438 INGEI-NESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNW 496
           ++GEI N+  S      LK L L  N                          ++G+ PN 
Sbjct: 152 LSGEIPNDIGSF---SSLKVLDLGGNV-------------------------LVGKIPNS 183

Query: 497 LLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 556
           L  N T LEFL L ++ L G     +   K L+++ +  NN  G IP EIG  L SL + 
Sbjct: 184 L-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHL 241

Query: 557 NISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI 616
           ++  N L G IPSS GN+  LQ+L L  NKL+G IP                        
Sbjct: 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP------------------------ 277

Query: 617 FSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 676
              IFSL+ L  L L  N   GEIP+ + +  +L+ L+L +NN +GKIP  L +L  LQ 
Sbjct: 278 -PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336

Query: 677 IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS--CFYPLSIKQVHLSKNMLHGQ 734
           + +  N   G IP    + ++L +LD+S NN++G +P   C      K +  S N L G+
Sbjct: 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS-NSLEGE 395

Query: 735 LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQL 794
           + + +   C SL  + L  N  +G +P     L  +  L++++NNL+G +  +   +  L
Sbjct: 396 IPK-SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454

Query: 795 QLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEF 854
           Q+L L+ N   G +P  F +  L                  S +   G+V +K+      
Sbjct: 455 QMLSLARNKFFGGLPDSFGSKRLE-------------NLDLSRNQFSGAVPRKL------ 495

Query: 855 TTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS 914
                        LS L  L LS NKL G IP ++ +  ++ +L+LSHN L+G IP +FS
Sbjct: 496 -----------GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544

Query: 915 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDG 974
            +  +  LDLS N+LSG+IP+ L ++ +L    +++N+L G +P  T  F   N S+  G
Sbjct: 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAG 603

Query: 975 NPFLCG----LPLPICRSL 989
           N  LCG      LP C+ +
Sbjct: 604 NIDLCGGDTTSGLPPCKRV 622

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  205 bits (522), Expect = 4e-54
 Identities = 149/438 (34%), Positives = 217/438 (49%), Gaps = 42/438 (9%)

Query: 527 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSS-FGNVIFLQFLDLSNN 585
           R+  +D+S  N  G I   I   LP +   N+S N L G IP   F     L++L+LSNN
Sbjct: 70  RVVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 586 KLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 645
             TG IP         LE L LSNN L G I + I S  +L+ L L GN  VG+IP SL+
Sbjct: 129 NFTGSIPRGSIPN---LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185

Query: 646 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 705
             +SL+ L L +N L G+IPR LG +K L+ I +  N+L G IP E   L SL  LD+  
Sbjct: 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245

Query: 706 NNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 764
           NN++G +PS    L  ++ + L +N L G +   + F+   L++LDLS N L+G IP+ +
Sbjct: 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIPELV 304

Query: 765 DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF---DNTTLHESY 821
             L  L  L+L  NN  G++P+ L  L +LQ+L L  N   G IP      +N T+ +  
Sbjct: 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364

Query: 822 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 881
            NN + + P     S                            G +  L+    L  N L
Sbjct: 365 TNNLTGEIPEGLCSS----------------------------GNLFKLI----LFSNSL 392

Query: 882 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 941
            G IP  +G    ++ + L  N+ +G +P  F+ L  +  LD+S N L G+I  +  D+ 
Sbjct: 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452

Query: 942 TLAIFIVAYNNLSGKIPE 959
           +L +  +A N   G +P+
Sbjct: 453 SLQMLSLARNKFFGGLPD 470

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  181 bits (460), Expect = 2e-46
 Identities = 189/691 (27%), Positives = 303/691 (43%), Gaps = 171/691 (24%)

Query: 121 SKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 180
           S++  +DL G   +  I S++ RL  + +++LS+N L G I    F + S+L  L++++N
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 181 EIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTT 240
                               + +G   R         GS P+L TL L +N  +  +   
Sbjct: 129 --------------------NFTGSIPR---------GSIPNLETLDLSNNMLSGEIP-- 157

Query: 241 QELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLE 300
            ++ +F++L+ L L  + L       +G I  SL NL+                      
Sbjct: 158 NDIGSFSSLKVLDLGGNVL-------VGKIPNSLTNLT---------------------- 188

Query: 301 HLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYID 360
                                   SL++L+L+ + L     R L Q    +  L+ +Y+ 
Sbjct: 189 ------------------------SLEFLTLASNQLVGQIPRELGQ----MKSLKWIYLG 220

Query: 361 NNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLE 420
            N+L G +P+ +   TSL  LD+ +N LTG I SS L +L +++ L L  N    P+   
Sbjct: 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIP-P 278

Query: 421 PLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELK 480
            +F+  KL   D  +N ++GEI E        QL++L                       
Sbjct: 279 SIFSLQKLISLDLSDNSLSGEIPEL-----VIQLQNL----------------------- 310

Query: 481 EAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQG 540
                                   E L+L +++  G   + + S  RL+ L + +N F G
Sbjct: 311 ------------------------EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346

Query: 541 HIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV 600
            IP  +G                         N   L  LDLS N LTGEIP+ L     
Sbjct: 347 EIPKNLG----------------------KHNN---LTVLDLSTNNLTGEIPEGLCSSG- 380

Query: 601 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL 660
           NL  L L +NSL+G I   + + R+LR + L+ N F GE+P   +K   +  L ++NNNL
Sbjct: 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL 440

Query: 661 SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS 720
            G+I     ++  LQ + + +N   G +P +      L+ LD+S N  SG++P     LS
Sbjct: 441 QGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLS 499

Query: 721 -IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNN 779
            + Q+ LS+N L G++ +    +C  LV+LDLS+N L+G IP     +  LS L+L+ N 
Sbjct: 500 ELMQLKLSENKLSGEIPD-ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558

Query: 780 LEGEVPIQLCRLNQLQLLDLSDNNLHGLIPS 810
           L GE+P  L  +  L  +++S N+LHG +PS
Sbjct: 559 LSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  103 bits (258), Expect = 3e-22
 Identities = 156/620 (25%), Positives = 251/620 (40%), Gaps = 116/620 (18%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           +DLSG   +  + S++ RL  ++++ LS+N+L G I      +   L  L++  N     
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEI---------------- 105
           +    +  L++L LS     G     +  SF++L+VLD+ GN +                
Sbjct: 134 IPRGSIPNLETLDLSNNMLSGEI-PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192

Query: 106 ----DNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSI 161
                N +V Q    L ++  LK + L  N  +  I   +  L+SL  L L +N L G I
Sbjct: 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252

Query: 162 DAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFP 221
            +    +L NL+ L +  N++    +      L+KL SLDLS   +    ++ + +    
Sbjct: 253 PS-SLGNLKNLQYLFLYQNKLSG-PIPPSIFSLQKLISLDLSDNSL--SGEIPELVIQLQ 308

Query: 222 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 281
           +L  LHL SNNFT  +     L +   L+ L L  +     + +++G       NL++  
Sbjct: 309 NLEILHLFSNNFTGKIPVA--LTSLPRLQVLQLWSNKFSGEIPKNLG----KHNNLTVLD 362

Query: 282 CEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSS 341
              N  L+G+      S  +L   F  I  + S   + GE   SL               
Sbjct: 363 LSTNN-LTGEIPEGLCSSGNL---FKLILFSNS---LEGEIPKSL--------------- 400

Query: 342 RILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLT 401
                G C    L+ + + +N   G LP        +  LD+S N L G I+S     + 
Sbjct: 401 -----GAC--RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMP 452

Query: 402 SIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSS 461
           S++ L L+ N F     L   F   +L+  D   N+ +G +           L SLS   
Sbjct: 453 SLQMLSLARNKFF--GGLPDSFGSKRLENLDLSRNQFSGAVPRK--------LGSLS--- 499

Query: 462 NYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP 521
                           EL + +LS  K+ GE P+ L                        
Sbjct: 500 ----------------ELMQLKLSENKLSGEIPDEL------------------------ 519

Query: 522 IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLD 581
             S K+L  LD+S+N   G IP    + +P L   ++S N L G IP + GNV  L  ++
Sbjct: 520 -SSCKKLVSLDLSHNQLSGQIPASFSE-MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577

Query: 582 LSNNKLTGEIPDHLAMCCVN 601
           +S+N L G +P   A   +N
Sbjct: 578 ISHNHLHGSLPSTGAFLAIN 597

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 84.5 bits (209), Expect = 1e-16
 Identities = 46/119 (38%), Positives = 64/119 (53%), Gaps = 8/119 (6%)

Query: 873 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 932
           GL L    L G IP  I  L  +Q++NLS N++ G IP +  ++  +E LDLSYN  +G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 933 IPRQLVDLNTLAIFIVAYNNLSGKIPEWTA----QFATFNKSSYDGNPFLCGLP-LPIC 986
           IP  L  L +L I  +  N+LSG++P          A+FN   +  N  LCG+P L  C
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLRAC 537

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.6 bits (160), Expect = 1e-10
 Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 15/243 (6%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 60
           +LDLS N     +   L    +L  L L  N LEG I  K L + R L  + +  N    
Sbjct: 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP-KSLGACRSLRRVRLQDNSFSG 418

Query: 61  FMVSKGLSKLK---SLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERL 117
            +     +KL     L +S    +G  + R++D   +L++L ++ N+        GL   
Sbjct: 419 EL-PSEFTKLPLVYFLDISNNNLQGRINSRKWD-MPSLQMLSLARNKFFG-----GLPDS 471

Query: 118 SRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDI 177
               +L+ LDL  N  + ++   +  LS L  L LS N L G I   E  S   L  LD+
Sbjct: 472 FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI-PDELSSCKKLVSLDL 530

Query: 178 NDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATL 237
           + N++ + ++   +  +  L  LDLS   +    ++ +++G+  SL  +++  N+   +L
Sbjct: 531 SHNQL-SGQIPASFSEMPVLSQLDLSQNQL--SGEIPKNLGNVESLVQVNISHNHLHGSL 587

Query: 238 TTT 240
            +T
Sbjct: 588 PST 590

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.2 bits (159), Expect = 1e-10
 Identities = 38/94 (40%), Positives = 59/94 (62%), Gaps = 1/94 (1%)

Query: 576 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH 635
           F+  L L N  L G IP+ ++    +L+ ++LS NS++G+I   + S+ +L  L L  N 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKL-RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 636 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 669
           F G IP+SL + +SL+ L LN N+LSG++P  LG
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.8 bits (158), Expect = 1e-10
 Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 24/105 (22%)

Query: 684 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC 743
           L G IP +  +L  LQ +++S N+I G++P                         +  + 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPP------------------------SLGSI 465

Query: 744 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL 788
           +SL  LDLSYN  NGSIP+ +  L+ L  LNL  N+L G VP  L
Sbjct: 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 7e-10
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 507 LYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGS 566
           L L N  L G     I   + L+ +++S N+ +G+IP  +G I  SL   ++S N+ +GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGS 481

Query: 567 IPSSFGNVIFLQFLDLSNNKLTGEIP 592
           IP S G +  L+ L+L+ N L+G +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 1e-09
 Identities = 27/77 (35%), Positives = 47/77 (61%)

Query: 638 GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS 697
           G IP  +SK   L+ + L+ N++ G IP  LG++  L+ + +  N   G IP    +L S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 698 LQILDISDNNISGSLPS 714
           L+IL+++ N++SG +P+
Sbjct: 492 LRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 2e-09
 Identities = 34/85 (40%), Positives = 48/85 (56%)

Query: 605 LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 664
           L L N  L+G I + I  LR+L+ + L GN   G IP SL   +SL+ L L+ N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 665 PRWLGNLKGLQHIVMPKNHLEGPIP 689
           P  LG L  L+ + +  N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 5e-09
 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 531 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 590
           L + N   +G IP +I   L  L   N+S N++ G+IP S G++  L+ LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 591 IPDHLAMCCVNLEFLSLSNNSLKGHI 616
           IP+ L     +L  L+L+ NSL G +
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 5e-09
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 895 IQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 954
           I  L L +  L G IP   S LRH++S++LS N + G IP  L  + +L +  ++YN+ +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 955 GKIPEWTAQFATFNKSSYDGNPFLCG 980
           G IPE   Q  +    + +GN  L G
Sbjct: 480 GSIPESLGQLTSLRILNLNGN-SLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 5e-08
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 351 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 410
           L HLQ + +  N +RG++P  L + TSL +LD+S+N   GSI  S L  LTS+  L L+ 
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNG 499

Query: 411 NHF--RIPVSL 419
           N    R+P +L
Sbjct: 500 NSLSGRVPAAL 510

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 59/207 (28%), Positives = 91/207 (43%), Gaps = 28/207 (13%)

Query: 2   LDLSGNAF---NNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRD----LEELDIG 54
           LDLS NA       VL SL R SSL+ L L++N L           L+D    LE+L +G
Sbjct: 86  LDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG 145

Query: 55  GNKI---DKFMVSKGLSKLKSL--------GLSGTGFKGTFDVREFDSFNNLEVLDMSGN 103
            N++       ++K L   + L        G+   G +         +  NLEVLD++ N
Sbjct: 146 RNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA--EGLKANCNLEVLDLNNN 203

Query: 104 EIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVA-----RLSSLTSLHLSHNIL- 157
            + +       E L+ L  L+ L+L  N   ++  +++A        SL +L LS N + 
Sbjct: 204 GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263

Query: 158 -QGSIDAKEF-DSLSNLEELDINDNEI 182
             G+ D  E      +L ELD+  N+ 
Sbjct: 264 DDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 749 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 808
           L L    L G IP+ I  L  L  +NL+ N++ G +P  L  +  L++LDLS N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 809 P 809
           P
Sbjct: 483 P 483

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 5e-07
 Identities = 25/78 (32%), Positives = 47/78 (60%)

Query: 746 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 805
           L +++LS N + G+IP  +  ++ L  L+L++N+  G +P  L +L  L++L+L+ N+L 
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 806 GLIPSCFDNTTLHESYNN 823
           G +P+      LH +  N
Sbjct: 504 GRVPAALGGRLLHRASFN 521

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 2e-06
 Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 53/141 (37%)

Query: 770 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDK 829
           +  L L +  L G +P  + +L  LQ ++LS N++ G IP    +               
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS--------------- 464

Query: 830 PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 889
                  I+                                L  LDLS N   G IP  +
Sbjct: 465 -------ITS-------------------------------LEVLDLSYNSFNGSIPESL 486

Query: 890 GNLTRIQTLNLSHNNLTGTIP 910
           G LT ++ LNL+ N+L+G +P
Sbjct: 487 GQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 70/274 (25%), Positives = 106/274 (38%), Gaps = 20/274 (7%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 60
            LDL  N   +         S+L+ L LSDN++E       L +L +L+ LD+  N +  
Sbjct: 120 SLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPS--PLRNLPNLKNLDLSFNDLSD 177

Query: 61  FMVSKG-LSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSR 119
                  LS L +L LSG          E    + LE LD+S N I  L+       LS 
Sbjct: 178 LPKLLSNLSNLNNLDLSGNKISDLPPEIELL--SALEELDLSNNSIIELLSS-----LSN 230

Query: 120 LSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND 179
           L  L  L+L  N   +    S+  LS+L +L LS+N +          SL+NL ELD++ 
Sbjct: 231 LKNLSGLELSNNKLEDLP-ESIGNLSNLETLDLSNNQIS---SISSLGSLTNLRELDLSG 286

Query: 180 NEIDNVEVSRGYRGL--RKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT--- 234
           N + N         L    L +L L+   +      +    +  S               
Sbjct: 287 NSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEALSILES 346

Query: 235 -ATLTTTQELHNFTNLEYLTLDDSSLHISLLQSI 267
              L T     + +NL    + + +   SLL  +
Sbjct: 347 LNNLWTLDNALDESNLNRYIVKNPNAIGSLLDLV 380

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 724 VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL 780
           + LS N L   + +G F    +L  LDLS N L    P+   GL  L  L+L+ NNL
Sbjct: 5   LDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 48.9 bits (117), Expect = 7e-06
 Identities = 70/339 (20%), Positives = 116/339 (34%), Gaps = 78/339 (23%)

Query: 40  KELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLD 99
             L     L+EL +  N+             + L     G      ++E D  +N    D
Sbjct: 45  SALRPQPSLKELCLSLNETG--------RIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96

Query: 100 MSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVAR-----LSSLTSLHLSH 154
             G           LE L R S L++L L  N   +  L  +A+       +L  L L  
Sbjct: 97  GCG----------VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGR 146

Query: 155 NIL--QGSID-AKEFDSLSNLEELDINDNEIDNVEVSRGYRGLR---KLKSLDLSGVGIR 208
           N L        AK   +  +L+EL++ +N I +  +     GL+    L+ LDL+  G+ 
Sbjct: 147 NRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206

Query: 209 DGNKLLQSMG--SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQS 266
           D      +    S  SL  L+L  NN T                   L  + L  +    
Sbjct: 207 DEGASALAETLASLKSLEVLNLGDNNLTDAGA-------------AALASALLSPN---- 249

Query: 267 IGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSL 326
                 SL  LS+S  ++      +                         +++ E   SL
Sbjct: 250 -----ISLLTLSLSCNDI-TDDGAK----------------------DLAEVLAE-KESL 280

Query: 327 KYLSLSGSTLGTNSSRILDQ-GLCPLAHLQELYIDNNDL 364
             L L G+  G   +++L +  L P   L+ L++ ++  
Sbjct: 281 LELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.1 bits (105), Expect = 7e-06
 Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 874 LDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 929
           LDLS N+L   IP      L  ++ L+LS NNLT   P  FS L  + SLDLS N L
Sbjct: 5   LDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.2 bits (117), Expect = 8e-06
 Identities = 76/276 (27%), Positives = 117/276 (42%), Gaps = 30/276 (10%)

Query: 10  NNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGL-- 67
           + +   +L  L  L SL L+ NRL  +I   EL  L +L  LD+  N I       GL  
Sbjct: 82  SLDGSENLLNLLPLPSLDLNLNRLRSNIS--ELLELTNLTSLDLDNNNITDIPPLIGLLK 139

Query: 68  SKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLV----VPQGLERLS----- 118
           S LK L LS    +         +  NL+ LD+S N++ +L         L  L      
Sbjct: 140 SNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK 197

Query: 119 ---------RLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSL 169
                     LS L++LDL  N     +LSS++ L +L+ L LS+N L+   ++    +L
Sbjct: 198 ISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLEDLPESIG--NL 254

Query: 170 SNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLE 229
           SNLE LD+++N+I ++        L  L+ LDLSG  + +   L+  +     L    L 
Sbjct: 255 SNLETLDLSNNQISSIS---SLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLL 311

Query: 230 SNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQ 265
           +         +  L+N       T    +L I    
Sbjct: 312 TLKALELKLNSILLNNNILSNGETSSPEALSILESL 347

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.8 bits (116), Expect = 1e-05
 Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 14/223 (6%)

Query: 498 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 557
           L   T L  L L N+++     L       L+ LD+S+N  +  +P  + + LP+L   +
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLD 169

Query: 558 ISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF 617
           +S N L   +P    N+  L  LDLS NK++ ++P  + +    LE L LSNN     I 
Sbjct: 170 LSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLS-ALEELDLSNN----SII 222

Query: 618 SRIFSLRNLRWLLLEG--NHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQ 675
             + SL NL+ L      N+ + ++P+S+   S+L+ L L+NN +S      LG+L  L+
Sbjct: 223 ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLR 280

Query: 676 HIVMPKNHLEGPIPVEF-CRLDSLQILDISDNNISGSLPSCFY 717
            + +  N L   +P+     L    +L++     +  L     
Sbjct: 281 ELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSI 323

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 25/60 (41%), Positives = 30/60 (50%)

Query: 745 SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 804
           +L +LDLS N L         GL  L  L+L+ NNL    P     L  L+ LDLS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.7 bits (108), Expect = 9e-05
 Identities = 82/337 (24%), Positives = 130/337 (38%), Gaps = 20/337 (5%)

Query: 294 PHFKSLEHLDMRFARIAL----NTSFLQIIGESMPSLKYLSLS-GSTLGTNSSRILDQGL 348
                   L     R  L      +  Q I  + P     S++        SS  L    
Sbjct: 4   AENLLKSALSSNTLREVLSSNTYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLP 63

Query: 349 CPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRL 408
             L+ L  L + +     SL         L +  +  N      + S L+ LT++  L L
Sbjct: 64  SSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDL 123

Query: 409 SNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVT 468
            NN+    +        S LK  D  +N+I    +   +L     LK+L LS N  D   
Sbjct: 124 DNNNI-TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLP---NLKNLDLSFN--DLSD 177

Query: 469 FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL 528
            PK L +   L   +LS  K I + P   +E  + LE L L N+S+       + + K L
Sbjct: 178 LPKLLSNLSNLNNLDLSGNK-ISDLPP-EIELLSALEELDLSNNSII-ELLSSLSNLKNL 234

Query: 529 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 588
             L++SNN  +          L +L   ++S N +  S  SS G++  L+ LDLS N L+
Sbjct: 235 SGLELSNNKLEDLPESIGN--LSNLETLDLSNNQI--SSISSLGSLTNLRELDLSGNSLS 290

Query: 589 GEIPDHLAM--CCVNLEFLSLSNNSLKGHIFSRIFSL 623
             +P    +      L  L L+  +L+  + S + + 
Sbjct: 291 NALPLIALLLLLLELLLNLLLTLKALELKLNSILLNN 327

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 146 SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 204
           +L SL LS+N L   I    F  L NL+ LD++ N + ++     + GL  L+SLDLSG
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSIS-PEAFSGLPSLRSLDLSG 57

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 12/98 (12%)

Query: 88  EFDSFNNLEVLDMSGNEIDNLVVPQGL-----ERLSRLSKLKKLDLRGNLCNNSILSSVA 142
           +FDS      +D  G  +DN    QGL       +S+L  L+ ++L GN    +I  S+ 
Sbjct: 410 QFDSTKGKWFID--GLGLDN----QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 143 RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 180
            ++SL  L LS+N   GSI       L++L  L++N N
Sbjct: 464 SITSLEVLDLSYNSFNGSIPE-SLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 67/260 (25%), Positives = 97/260 (37%), Gaps = 82/260 (31%)

Query: 577 LQFLDLSNNKLTGEIPDHLAMC------CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLL 630
           L+ L LS N+ TG IP  L            L+ L LS+N+L                  
Sbjct: 53  LKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD--------------- 96

Query: 631 LEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPV 690
             G   +    +SL + SSL+ L LNNN L  +  R L   KGL+ +             
Sbjct: 97  --GCGVL----ESLLRSSSLQELKLNNNGLGDRGLRLLA--KGLKDLP------------ 136

Query: 691 EFCRLDSLQILDISDNNISGSLPSCFYPLS--------IKQVHLSKNMLHGQ----LKEG 738
               L+    L +  N + G+  SC   L+        +K+++L+ N +       L EG
Sbjct: 137 --PALEK---LVLGRNRLEGA--SCE-ALAKALRANRDLKELNLANNGIGDAGIRALAEG 188

Query: 739 TFFNCSSLVTLDLSYNYLN--------GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ--- 787
              NC +L  LDL+ N L          ++         L  LNL  NNL  +       
Sbjct: 189 LKANC-NLEVLDLNNNGLTDEGASALAETLASLK----SLEVLNLGDNNL-TDAGAAALA 242

Query: 788 ---LCRLNQLQLLDLSDNNL 804
              L     L  L LS N++
Sbjct: 243 SALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 894 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL 953
            +++L+LS+N LT      F  L +++ LDLS N L+   P     L +L    ++ NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 50/231 (21%), Positives = 86/231 (37%), Gaps = 21/231 (9%)

Query: 248 NLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFA 307
             E L  + ++  +  L  +  +      L     +              SL+ L +   
Sbjct: 6   KGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAK----ALASALRPQPSLKELCLSLN 61

Query: 308 RIALNTSFLQIIGESMPS---LKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 364
                   LQ + + +     L+ L LS + LG +   +L + L   + LQEL ++NN L
Sbjct: 62  ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGL 120

Query: 365 RGSLPWCLA-----NTTSLRILDVSFNQLTGSIS---SSPLVHLTSIEELRLSNNHFR-- 414
                  LA        +L  L +  N+L G+     +  L     ++EL L+NN     
Sbjct: 121 GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180

Query: 415 -IPVSLEPLFNHSKLKIFDAKNNEIN--GEINESHSLTPKFQLKSLSLSSN 462
            I    E L  +  L++ D  NN +   G    + +L     L+ L+L  N
Sbjct: 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 9/208 (4%)

Query: 598 CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN 657
             ++L+ LS S  S      + + +L  L  L L  N     I   L + ++L  L L+N
Sbjct: 68  RLLSLDLLSPSGISSLDGSENLL-NLLPLPSLDLNLNRLRSNIS-ELLELTNLTSLDLDN 125

Query: 658 NNLSGKIPRWLGNLK-GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF 716
           NN++  IP  +G LK  L+ + +  N +E  +P     L +L+ LD+S N++S       
Sbjct: 126 NNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLS 183

Query: 717 YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 776
              ++  + LS N +            S+L  LDLS N +   +   +  L  LS L L+
Sbjct: 184 NLSNLNNLDLSGNKI--SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELS 240

Query: 777 HNNLEGEVPIQLCRLNQLQLLDLSDNNL 804
           +N LE ++P  +  L+ L+ LDLS+N +
Sbjct: 241 NNKLE-DLPESIGNLSNLETLDLSNNQI 267

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 29/61 (47%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 577 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 635
           L+ LDLSNN+LT  IPD       NL+ L LS N+L   I    FS L +LR L L GN+
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 636 F 636
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 6e-04
 Identities = 17/60 (28%), Positives = 26/60 (43%)

Query: 625 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 684
           NL+ L L  N        +     +LK L L+ NNL+   P     L  L+ + +  N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 649 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI 708
           +LK L L+NN L+         L  L+ + +  N+L    P  F  L SL+ LD+S NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 353 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 412
           +L+ L + NN L            +L++LD+S N LT SIS      L S+  L LS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 413 F 413
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 0.003
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 503 KLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNA 562
            L+ + L  +S+ G     + S   L  LD+S N+F G IP  +G  L SL   N++ N+
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNS 501

Query: 563 LDGSIPSSFG 572
           L G +P++ G
Sbjct: 502 LSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 601 NLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN 659
           NL+ L LSNN L   I    F  L NL+ L L GN+     P++ S   SL+ L L+ NN
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 660 L 660
           L
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1066
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
PLN03150	623	hypothetical protein; Provisional	99.59
PLN03150	623	hypothetical protein; Provisional	99.33
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.22
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.14
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.04
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.01
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.0
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.0
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.93
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.92
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.91
KOG4341	483	consensus F-box protein containing LRR [General fu	98.83
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.82
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.76
KOG4341	483	consensus F-box protein containing LRR [General fu	98.73
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.7
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.62
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.56
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.54
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.53
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.52
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.38
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.38
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.28
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.2
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.16
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.15
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.12
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.08
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.85
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.83
PRK15386	426	type III secretion protein GogB; Provisional	97.75
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.71
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.55
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.43
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.4
PRK15386	426	type III secretion protein GogB; Provisional	97.39
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.38
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.33
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.05
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.99
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.99
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.79
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.78
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.6
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.39
KOG4308	478	consensus LRR-containing protein [Function unknown	92.68
KOG4308	478	consensus LRR-containing protein [Function unknown	92.5
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.03
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.66
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.59
smart00370	26	LRR Leucine-rich repeats, outliers.	88.59
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.7
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	87.65
smart00370	26	LRR Leucine-rich repeats, outliers.	87.32
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.32
KOG0473	326	consensus Leucine-rich repeat protein [Function un	83.67
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	82.86
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.08

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.6e-62  Score=624.48  Aligned_cols=542  Identities=34%  Similarity=0.517  Sum_probs=494.6

Q ss_pred             CCCcEEECCCCccccccchhccCCCCCcEEecccCcCcCCCCCccccCCCCCCEEEcccCcccccCCcccccCCCCccEE
Q 001497          352 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF  431 (1066)
Q Consensus       352 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l  431 (1066)
                      .+++.|++++|.+.+.++..|..+++|+.|++++|.+.+.+|...+..+++|++|++++|.+.+.+|.   ..+++|++|
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L  145 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETL  145 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEE
Confidence            47899999999999988999999999999999999998888655566899999999999998877664   345677777


Q ss_pred             ecCCCcccccccccCCCCCcccceEEEccCCCCCCcccCcccccCCCccEEEcCCCcCcccCchhhhhcCCCCcEEEccC
Q 001497          432 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN  511 (1066)
Q Consensus       432 ~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~  511 (1066)
                      ++++|.+.                           +.+|..+..+++|+.|++++|.+.+.+|.. +.++++|+.|++++
T Consensus       146 ~Ls~n~~~---------------------------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~  197 (968)
T PLN00113        146 DLSNNMLS---------------------------GEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLAS  197 (968)
T ss_pred             ECcCCccc---------------------------ccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccC
Confidence            77776643                           245666777889999999999998888887 57899999999999


Q ss_pred             CcccCcCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCcccc
Q 001497          512 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI  591 (1066)
Q Consensus       512 n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i  591 (1066)
                      |.+.+..|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..++++++|++|++++|++++.+
T Consensus       198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  276 (968)
T PLN00113        198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI  276 (968)
T ss_pred             CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC
Confidence            9999988988999999999999999999889988775 899999999999999999999999999999999999999888


Q ss_pred             ChhhhhcCCCCCEEEccCccccccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCC
Q 001497          592 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL  671 (1066)
Q Consensus       592 p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l  671 (1066)
                      |..+. .+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+
T Consensus       277 p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~  355 (968)
T PLN00113        277 PPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH  355 (968)
T ss_pred             chhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence            88874 78999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEccCCcccCCCCccccCCCCCCEEEccCCcccccCCCCCC-CCcccEEEcCCCccccccCcccccCCCCccEEE
Q 001497          672 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLD  750 (1066)
Q Consensus       672 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  750 (1066)
                      ++|+.|++++|++.+.+|..++.+++|+.|++++|++.+.+|..+. ..+|+.|++++|.+.+.+|. .|..+++|+.|+
T Consensus       356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~  434 (968)
T PLN00113        356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS-EFTKLPLVYFLD  434 (968)
T ss_pred             CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh-hHhcCCCCCEEE
Confidence            9999999999999999999999999999999999999999888765 46899999999999998887 899999999999


Q ss_pred             ccCcccccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCCCCCCCC
Q 001497          751 LSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKP  830 (1066)
Q Consensus       751 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~  830 (1066)
                      +++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.||+++|++++.+|..|.+++              
T Consensus       435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~--------------  499 (968)
T PLN00113        435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS--------------  499 (968)
T ss_pred             CcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh--------------
Confidence            99999999999999999999999999999999888766 468999999999999999988776543              


Q ss_pred             CccccccCCCCCchhhhhhhhhhhhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccc
Q 001497          831 FKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP  910 (1066)
Q Consensus       831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  910 (1066)
                                                             .|+.|+|++|++++.+|..++.+++|++|+|++|.++|.+|
T Consensus       500 ---------------------------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  540 (968)
T PLN00113        500 ---------------------------------------ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP  540 (968)
T ss_pred             ---------------------------------------ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence                                                   78999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEcccCcccccCCCCccccCccCccccCCCCCCCCCC
Q 001497          911 LTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP  982 (1066)
Q Consensus       911 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~  982 (1066)
                      ..|+++++|+.|||++|+++|.+|..+..+++|+++++++|+++|.+|. .+++.++...++.|||++|+.+
T Consensus       541 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC-cchhcccChhhhcCCccccCCc
Confidence            9999999999999999999999999999999999999999999999998 7899999999999999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=8.4e-57  Score=572.04  Aligned_cols=521  Identities=32%  Similarity=0.513  Sum_probs=483.7

Q ss_pred             CCCCcEEecccCcCcCCCCCccccCCCCCCEEEcccCcccccCCcccccCCCCccEEecCCCcccccccccCCCCCcccc
Q 001497          375 TTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQL  454 (1066)
Q Consensus       375 l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~L  454 (1066)
                      ..+++.|++++|.+++.+ +..+..+++|++|++++|.+.+.+|...+.++++|++|++++|.+.+..+.          
T Consensus        68 ~~~v~~L~L~~~~i~~~~-~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~----------  136 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKI-SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR----------  136 (968)
T ss_pred             CCcEEEEEecCCCccccC-ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc----------
Confidence            357999999999999887 678999999999999999999888887777999999999999987643221          


Q ss_pred             eEEEccCCCCCCcccCcccccCCCccEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccCcCCCCCCCCCCccEEEcc
Q 001497          455 KSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVS  534 (1066)
Q Consensus       455 ~~L~Ls~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls  534 (1066)
                                         ..++.|++|++++|.+.+.+|.. +.++++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus       137 -------------------~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  196 (968)
T PLN00113        137 -------------------GSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA  196 (968)
T ss_pred             -------------------cccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence                               23467899999999999999987 5789999999999999999999999999999999999


Q ss_pred             CCcccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEccCccccc
Q 001497          535 NNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG  614 (1066)
Q Consensus       535 ~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~  614 (1066)
                      +|.+.+.+|..+.. +++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..+ ..+++|++|++++|.+.+
T Consensus       197 ~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~  274 (968)
T PLN00113        197 SNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSG  274 (968)
T ss_pred             CCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeec
Confidence            99999999988776 8999999999999999999999999999999999999998899876 589999999999999999


Q ss_pred             cccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCCCccccC
Q 001497          615 HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR  694 (1066)
Q Consensus       615 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  694 (1066)
                      ..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..
T Consensus       275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  354 (968)
T PLN00113        275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK  354 (968)
T ss_pred             cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEccCCcccccCCCCCCC-CcccEEEcCCCccccccCcccccCCCCccEEEccCcccccccchhhhCCCCCCEE
Q 001497          695 LDSLQILDISDNNISGSLPSCFYP-LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHL  773 (1066)
Q Consensus       695 l~~L~~L~l~~n~~~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  773 (1066)
                      +++|+.|++++|++++.+|..+.. .+++.+++++|.+.+.+|. .+..+++|+.|++++|++++.+|..+..+++|+.|
T Consensus       355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  433 (968)
T PLN00113        355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK-SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL  433 (968)
T ss_pred             CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH-HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEE
Confidence            999999999999999999987754 5899999999999999988 89999999999999999999999999999999999


Q ss_pred             eCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhh
Q 001497          774 NLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFE  853 (1066)
Q Consensus       774 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  853 (1066)
                      ++++|.+++.+|..+..+++|+.|++++|++.+.+|..+..                                       
T Consensus       434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~---------------------------------------  474 (968)
T PLN00113        434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS---------------------------------------  474 (968)
T ss_pred             ECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc---------------------------------------
Confidence            99999999999999999999999999999999888875532                                       


Q ss_pred             hhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCcccc
Q 001497          854 FTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI  933 (1066)
Q Consensus       854 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i  933 (1066)
                                     +.|+.||+++|++++.+|..|.++++|+.|+|++|++++.+|..++++++|++|+|++|+++|.+
T Consensus       475 ---------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  539 (968)
T PLN00113        475 ---------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI  539 (968)
T ss_pred             ---------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence                           26899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCCCCCEEEcccCcccccCCCCccccCccCccccCCCCCCCCCCC
Q 001497          934 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL  983 (1066)
Q Consensus       934 p~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~l  983 (1066)
                      |..+..++.|+.|++++|+++|.+|.....+..+....+.+|+..+..|.
T Consensus       540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            99999999999999999999999998788888889999999998886653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-40  Score=346.53  Aligned_cols=376  Identities=26%  Similarity=0.306  Sum_probs=233.5

Q ss_pred             cEEEccCCcccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEcc
Q 001497          529 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS  608 (1066)
Q Consensus       529 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~  608 (1066)
                      +.|++++|++. .+....+..+++|+.+++.+|.++ .+|..-+...+++.|+|.+|.|+ ++.......++.|+.||||
T Consensus        81 ~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   81 QTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhh
Confidence            34555555554 344444444555555555555555 44444334444555555555554 4443333444555555555


Q ss_pred             CccccccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCC
Q 001497          609 NNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI  688 (1066)
Q Consensus       609 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  688 (1066)
                      .|.|+.+....|..-.++++|+|++|.|+...-..|..+.+|.+|.|+.|+++...+..|.++++|+.|+|..|++.-.-
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence            55555444444444455555555555555444445555555555555555555444444445555555555555554322


Q ss_pred             CccccCCCCCCEEEccCCcccccCCCCCCCCcccEEEcCCCccccccCcccccCCCCccEEEccCcccccccchhhhCCC
Q 001497          689 PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLS  768 (1066)
Q Consensus       689 ~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~  768 (1066)
                      --.|.++++|+.|.+..|.++                        .+..++|.++.++++|+|+.|+++..-..|+.+++
T Consensus       238 ~ltFqgL~Sl~nlklqrN~I~------------------------kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt  293 (873)
T KOG4194|consen  238 GLTFQGLPSLQNLKLQRNDIS------------------------KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT  293 (873)
T ss_pred             hhhhcCchhhhhhhhhhcCcc------------------------cccCcceeeecccceeecccchhhhhhcccccccc
Confidence            334455555555555555544                        35555778888888888888888777777888888


Q ss_pred             CCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCCCCCCCCCccccccCCCCCchhhhh
Q 001497          769 QLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI  848 (1066)
Q Consensus       769 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  848 (1066)
                      +|+.|+++.|.|..+.++.+...++|+.|||++|+++...+..|..+                                 
T Consensus       294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L---------------------------------  340 (873)
T KOG4194|consen  294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVL---------------------------------  340 (873)
T ss_pred             hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHH---------------------------------
Confidence            88888888888887777777777888888888888877766666543                                 


Q ss_pred             hhhhhhhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccch---hccCCCCCCEEeCC
Q 001497          849 LEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL---TFSNLRHIESLDLS  925 (1066)
Q Consensus       849 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls  925 (1066)
                                          ..|++|.|++|++...-...|..+++|++|||++|.+++.|.+   .|.+|++|+.|+|.
T Consensus       341 --------------------~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~  400 (873)
T KOG4194|consen  341 --------------------SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLT  400 (873)
T ss_pred             --------------------HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeec
Confidence                                3677777777777766666777777777777777777776653   46677777777777


Q ss_pred             CCcCccccCccccCCCCCCEEEcccCcccccCCCCccccCccCccccCCCCCCCCCCCCC
Q 001497          926 YNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPI  985 (1066)
Q Consensus       926 ~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~l~~  985 (1066)
                      +|+|..+-..+|.++..|+.|||.+|.+-..-|..+.+. .++..-+..-.++|+|.+.|
T Consensus       401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~W  459 (873)
T KOG4194|consen  401 GNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKW  459 (873)
T ss_pred             CceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHH
Confidence            777775555677777777777777777776666655555 55555555667788887654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-38  Score=331.43  Aligned_cols=363  Identities=26%  Similarity=0.291  Sum_probs=225.5

Q ss_pred             cEEEccCCcccCcCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccC
Q 001497          505 EFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN  584 (1066)
Q Consensus       505 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  584 (1066)
                      +.|++++|.+....+..|.++++|+.+++.+|.++ .||..... ..+++.|+|.+|.|+.+..+.+..++.|+.||||.
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            44666666665555555566666666666666666 56654433 45577777777777666666666667777777777


Q ss_pred             ccCccccChhhhhcCCCCCEEEccCccccccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCC
Q 001497          585 NKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI  664 (1066)
Q Consensus       585 n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  664 (1066)
                      |.|+ ++|...|..-.++++|+|+.|.|+......|..+.+|..|.|+.|+++...+..|.+++.|+.|+|..|+|.-.-
T Consensus       159 N~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  159 NLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             chhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence            7776 666665555566777777777777666666777777777777777777555556666777777777777765222


Q ss_pred             CccccCCCCCcEEEccCCcccCCCCccccCCCCCCEEEccCCcccccCCCCCCCCcccEEEcCCCccccccCcccccCCC
Q 001497          665 PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCS  744 (1066)
Q Consensus       665 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  744 (1066)
                      -..|..+++|+.|.|..|.+.......|..+.++++|+|+.|++..                        +..+++.+++
T Consensus       238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~------------------------vn~g~lfgLt  293 (873)
T KOG4194|consen  238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA------------------------VNEGWLFGLT  293 (873)
T ss_pred             hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh------------------------hhcccccccc
Confidence            3456667777777777777766666677777777777777777652                        2333555556


Q ss_pred             CccEEEccCcccccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCC
Q 001497          745 SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNN  824 (1066)
Q Consensus       745 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~  824 (1066)
                      +|+.|+||+|.|..+-++....+++|++|+|+.|+|+...++.|..+..|+.|+|++|+++......|..          
T Consensus       294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~----------  363 (873)
T KOG4194|consen  294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG----------  363 (873)
T ss_pred             hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH----------
Confidence            6666666666665555555555566666666666666555555666666666666666555433333322          


Q ss_pred             CCCCCCCccccccCCCCCchhhhhhhhhhhhccccccccccccccccceEEccCCcccCcCCc---CCCCCCCCCEEECc
Q 001497          825 SSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP---QIGNLTRIQTLNLS  901 (1066)
Q Consensus       825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls  901 (1066)
                                                                 +.+|+.|||++|.+++.|.+   .|..++.|+.|+|.
T Consensus       364 -------------------------------------------lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~  400 (873)
T KOG4194|consen  364 -------------------------------------------LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLT  400 (873)
T ss_pred             -------------------------------------------hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeec
Confidence                                                       22555666666666555443   25556666666666


Q ss_pred             CccCccccchhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEc
Q 001497          902 HNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV  948 (1066)
Q Consensus       902 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~l  948 (1066)
                      +|++..+...+|.++.+||.|||.+|.|..+-|.+|..+ .|+.|-+
T Consensus       401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~  446 (873)
T KOG4194|consen  401 GNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM  446 (873)
T ss_pred             CceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence            666664444566666666666666666666666666665 5555443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2e-39  Score=327.21  Aligned_cols=477  Identities=26%  Similarity=0.375  Sum_probs=272.0

Q ss_pred             CCCCcEEECCCCccccccchhccCCCCCcEEecccCcCcCCCCCccccCCCCCCEEEcccCcccccCCcccccCCCCccE
Q 001497          351 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKI  430 (1066)
Q Consensus       351 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  430 (1066)
                      -..++.+.+++|.+.. +.+.+.++..|++|++++|+++ ++ |++++.+..++.+++++|++. .+             
T Consensus        44 qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~l-p~aig~l~~l~~l~vs~n~ls-~l-------------  106 (565)
T KOG0472|consen   44 QVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QL-PAAIGELEALKSLNVSHNKLS-EL-------------  106 (565)
T ss_pred             hcchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hC-CHHHHHHHHHHHhhcccchHh-hc-------------
Confidence            3457778888888773 4445778888888888888887 56 667788888888888888765 22             


Q ss_pred             EecCCCcccccccccCCCCCcccceEEEccCCCCCCcccCcccccCCCccEEEcCCCcCcccCchhhhhcCCCCcEEEcc
Q 001497          431 FDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV  510 (1066)
Q Consensus       431 l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~  510 (1066)
                                                             |+.+.+..++..++.++|++.. +|+. ++.+..++.++..
T Consensus       107 ---------------------------------------p~~i~s~~~l~~l~~s~n~~~e-l~~~-i~~~~~l~dl~~~  145 (565)
T KOG0472|consen  107 ---------------------------------------PEQIGSLISLVKLDCSSNELKE-LPDS-IGRLLDLEDLDAT  145 (565)
T ss_pred             ---------------------------------------cHHHhhhhhhhhhhccccceee-cCch-HHHHhhhhhhhcc
Confidence                                                   2222222333333333333332 2222 3455566666666


Q ss_pred             CCcccCcCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccc
Q 001497          511 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE  590 (1066)
Q Consensus       511 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  590 (1066)
                      +|++.. .|..+..+.++..+++.+|++. ..|.+... ++.|+++|...|.++ .+|..++++.+|..|++..|++. .
T Consensus       146 ~N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~  220 (565)
T KOG0472|consen  146 NNQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-F  220 (565)
T ss_pred             cccccc-CchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-c
Confidence            666653 3444556666666666666666 45544444 566666666666665 55666666666666666666666 6


Q ss_pred             cChhhhhcCCCCCEEEccCccccccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccC
Q 001497          591 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGN  670 (1066)
Q Consensus       591 ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  670 (1066)
                      +|+  |.+|..|++++++.|++.-...+....++++.+||+.+|++. ..|+.+.-+.+|++||+++|.++ ..|..+++
T Consensus       221 lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn  296 (565)
T KOG0472|consen  221 LPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGN  296 (565)
T ss_pred             CCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccccc
Confidence            662  235666666666666666443344446666666666666665 55666666666666666666665 45556666


Q ss_pred             CCCCcEEEccCCcccCCCCccccC-----CCCCCE----EEccCC---------cccccCCCCCCCCcccEEEcCCCccc
Q 001497          671 LKGLQHIVMPKNHLEGPIPVEFCR-----LDSLQI----LDISDN---------NISGSLPSCFYPLSIKQVHLSKNMLH  732 (1066)
Q Consensus       671 l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~----L~l~~n---------~~~~~~p~~~~~~~L~~L~l~~n~~~  732 (1066)
                      + .|+.|.+.+|.+..+--+-+.+     ++.|+.    =.++.-         ...+..|+.....+.+.|+++.-+++
T Consensus       297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt  375 (565)
T KOG0472|consen  297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT  375 (565)
T ss_pred             c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence            6 6666666666553210000000     000000    000000         00111122222234555555555554


Q ss_pred             cccCcccccCCC--CccEEEccCcccccccchhhhCCCCCCE-EeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCC
Q 001497          733 GQLKEGTFFNCS--SLVTLDLSYNYLNGSIPDWIDGLSQLSH-LNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP  809 (1066)
Q Consensus       733 ~~~~~~~~~~~~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  809 (1066)
                       .+|...|....  -.+..+++.|++. .+|..+..+..+.+ +.+++|.+ +.+|..++.+++|..|+|++|.+.. +|
T Consensus       376 -~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln~-LP  451 (565)
T KOG0472|consen  376 -LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLND-LP  451 (565)
T ss_pred             -cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhhh-cc
Confidence             44543343322  2555666666666 55555555544433 33343433 3666666666777777776666542 33


Q ss_pred             ccccCCccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhhccccccccccccccccceEEccCCcccCcCCcCC
Q 001497          810 SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI  889 (1066)
Q Consensus       810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  889 (1066)
                      ..++.                                                     +..|+.||+|.|+|. .+|..+
T Consensus       452 ~e~~~-----------------------------------------------------lv~Lq~LnlS~NrFr-~lP~~~  477 (565)
T KOG0472|consen  452 EEMGS-----------------------------------------------------LVRLQTLNLSFNRFR-MLPECL  477 (565)
T ss_pred             hhhhh-----------------------------------------------------hhhhheecccccccc-cchHHH
Confidence            33322                                                     124666777777666 566666


Q ss_pred             CCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEcccCccc
Q 001497          890 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS  954 (1066)
Q Consensus       890 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l~  954 (1066)
                      -.+..++.+-.++|++....|+.+.+|.+|..|||.+|.|. .||..++++++|+.|++++|++.
T Consensus       478 y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  478 YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            66666666666666666555555677777777777777766 66667777777777777777766

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.5e-38  Score=319.27  Aligned_cols=437  Identities=25%  Similarity=0.334  Sum_probs=261.5

Q ss_pred             CcccccCCCccEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccCcCCCCCCCCCCccEEEccCCcccccCChhhhhc
Q 001497          470 PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI  549 (1066)
Q Consensus       470 ~~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~  549 (1066)
                      |+.++....++.++.++|++. .+|+.+ ....++..++.+.|.+.. .+..++.+..+..++..+|+++ ..|.+++. 
T Consensus        84 p~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~-  158 (565)
T KOG0472|consen   84 PAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVN-  158 (565)
T ss_pred             CHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhhhhhhccccceee-cCchHHHHhhhhhhhccccccc-cCchHHHH-
Confidence            444444455566666666654 455542 345556666666666553 2334455555666666666665 55555554 


Q ss_pred             CCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEccCccccccccccccCCCCCCeE
Q 001497          550 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL  629 (1066)
Q Consensus       550 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  629 (1066)
                      +.++..+++.+|+++...|+.+. ++.|+++|...|-+. .+|..++ ++.+|+.|++.+|++. ..| .|.++..|++|
T Consensus       159 ~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg-~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~El  233 (565)
T KOG0472|consen  159 LSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELG-GLESLELLYLRRNKIR-FLP-EFPGCSLLKEL  233 (565)
T ss_pred             HHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhc-chhhhHHHHhhhcccc-cCC-CCCccHHHHHH
Confidence            45566666666666533333333 666666666666554 5666553 4566666666666655 233 55566666666


Q ss_pred             eccCccccccCCCCCC-CCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCCCccccCCCCCCEEEccCCcc
Q 001497          630 LLEGNHFVGEIPQSLS-KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI  708 (1066)
Q Consensus       630 ~L~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  708 (1066)
                      +++.|++. .+|.... +++++.+||+.+|++. +.|..+.-+.+|++||+++|.++ ..|..++++ .|+.|-+.+|++
T Consensus       234 h~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  234 HVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             HhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence            66666655 3444333 5566666666666665 55555556666666666666665 344455555 566666666655


Q ss_pred             cccCCCCCCC---CcccEEE-------cCCCcc----ccccCccc---ccCCCCccEEEccCcccccccchhhhCC--CC
Q 001497          709 SGSLPSCFYP---LSIKQVH-------LSKNML----HGQLKEGT---FFNCSSLVTLDLSYNYLNGSIPDWIDGL--SQ  769 (1066)
Q Consensus       709 ~~~~p~~~~~---~~L~~L~-------l~~n~~----~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~p~~~~~l--~~  769 (1066)
                      ...-.+....   .-+++|+       ++...-    .+..+...   .....+.+.|++++-+++....+.|..-  .-
T Consensus       310 rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~  389 (565)
T KOG0472|consen  310 RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEI  389 (565)
T ss_pred             HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcc
Confidence            4211111100   0011110       000000    00011111   1223455566666666663322233221  12


Q ss_pred             CCEEeCcCCcccccCChhhhcCCCCCEE-ECcCCcCcccCCccccCCccccccCCCCCCCCCCccccccCCCCCchhhhh
Q 001497          770 LSHLNLAHNNLEGEVPIQLCRLNQLQLL-DLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI  848 (1066)
Q Consensus       770 L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  848 (1066)
                      .+.+++++|++. .+|..+..+..+.+. ++++|.+ +.+|..+.                                   
T Consensus       390 Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~-----------------------------------  432 (565)
T KOG0472|consen  390 VTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELS-----------------------------------  432 (565)
T ss_pred             eEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHH-----------------------------------
Confidence            556666666666 556555555544432 3333332 23332222                                   


Q ss_pred             hhhhhhhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCc
Q 001497          849 LEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK  928 (1066)
Q Consensus       849 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  928 (1066)
                                        .++.++.|+|++|-+. .+|.+++.+..|+.||+|+|+|. .+|..+-.+..+|.+-.++|+
T Consensus       433 ------------------~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nq  492 (565)
T KOG0472|consen  433 ------------------QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQ  492 (565)
T ss_pred             ------------------hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccc
Confidence                              2558999999999998 89999999999999999999999 899999888899999999999


Q ss_pred             CccccCccccCCCCCCEEEcccCcccccCCCCccccCccCccccCCCCCC
Q 001497          929 LSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFL  978 (1066)
Q Consensus       929 l~~~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~l  978 (1066)
                      +....|+.+.++..|..||+.+|.+....|. .+..+++....+.|||+-
T Consensus       493 i~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  493 IGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI-LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccChHHhhhhhhcceeccCCCchhhCChh-hccccceeEEEecCCccC
Confidence            9977777899999999999999999966666 889999999999999985

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=6.3e-33  Score=294.30  Aligned_cols=393  Identities=27%  Similarity=0.371  Sum_probs=245.1

Q ss_pred             ceEEEccCCCCCCcccCcccccCCCccEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccCcCCCCCCCCCCccEEEc
Q 001497          454 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDV  533 (1066)
Q Consensus       454 L~~L~Ls~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  533 (1066)
                      .+-.++++|....+.+|+.+..+++++.|.+...++. .+|+. ++.+.+|++|.+.+|++.. +...+..++.|+.+++
T Consensus         9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeE-L~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~   85 (1255)
T KOG0444|consen    9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEE-LSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIV   85 (1255)
T ss_pred             eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHH-HHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhh
Confidence            3445555665556678888888888888888776653 67777 4678888888888888763 2345567777777777


Q ss_pred             cCCcccc-cCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEccCccc
Q 001497          534 SNNNFQG-HIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL  612 (1066)
Q Consensus       534 s~n~l~~-~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l  612 (1066)
                      ..|++.. -||.++|. +..|+.||||+|+++ ..|..+..-+++-+|+||+|+|. .||..+|.+++.|-+||||+|.+
T Consensus        86 R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen   86 RDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             hccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh
Confidence            7777642 36777776 777777777777777 56667777777777777777776 77777777777777777777777


Q ss_pred             cccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCC-CCCCccccCCCCCcEEEccCCcccCCCCcc
Q 001497          613 KGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS-GKIPRWLGNLKGLQHIVMPKNHLEGPIPVE  691 (1066)
Q Consensus       613 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~  691 (1066)
                      . .+|+.+..+..|++|+|++|.+...--..+..+++|++|.+++.+-+ ..+|..+..+.+|..+|++.|.+. ..|++
T Consensus       163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec  240 (1255)
T KOG0444|consen  163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC  240 (1255)
T ss_pred             h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence            6 34555566666666666666654332233344455555555554322 234444444444444444444443 34444


Q ss_pred             ccCCCCCCEEEccCCcccccCCCCCCCCcccEEEcCCCccccccCcccccCCCCccEEEccCcccccccchhhhCCCCCC
Q 001497          692 FCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS  771 (1066)
Q Consensus       692 ~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~  771 (1066)
                      +..+++|+.|+||+|                                                +|+ .+.-..+.-.+|+
T Consensus       241 ly~l~~LrrLNLS~N------------------------------------------------~it-eL~~~~~~W~~lE  271 (1255)
T KOG0444|consen  241 LYKLRNLRRLNLSGN------------------------------------------------KIT-ELNMTEGEWENLE  271 (1255)
T ss_pred             HhhhhhhheeccCcC------------------------------------------------cee-eeeccHHHHhhhh
Confidence            444444444444444                                                444 1222222233455


Q ss_pred             EEeCcCCcccccCChhhhcCCCCCEEECcCCcCcc-cCCccccCCccccccCCCCCCCCCCccccccCCCCCchhhhhhh
Q 001497          772 HLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG-LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILE  850 (1066)
Q Consensus       772 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  850 (1066)
                      +|+++.|+++ .+|.+++.++.|+.|.+.+|+++- -+|+.++.+                                   
T Consensus       272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL-----------------------------------  315 (1255)
T KOG0444|consen  272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL-----------------------------------  315 (1255)
T ss_pred             hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhh-----------------------------------
Confidence            5555555555 455555555555555555555431 133333332                                   


Q ss_pred             hhhhhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCc
Q 001497          851 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS  930 (1066)
Q Consensus       851 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  930 (1066)
                                        ..|..+..++|++. .+|+.++.+..|+.|+|++|++. ..|+++.-++.|+.|||..|.=-
T Consensus       316 ------------------~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  316 ------------------IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             ------------------hhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence                              25566667777776 78999999999999999999988 78999999999999999999644


Q ss_pred             cccCccccCCCCCCEEEcccC-----cccccCCC
Q 001497          931 GKIPRQLVDLNTLAIFIVAYN-----NLSGKIPE  959 (1066)
Q Consensus       931 ~~ip~~l~~l~~L~~l~ls~N-----~l~g~ip~  959 (1066)
                      -..|.-=..-+.|+.-|+.+-     +|.|..|.
T Consensus       376 VMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pa  409 (1255)
T KOG0444|consen  376 VMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPA  409 (1255)
T ss_pred             cCCCCcchhhhcceeeecceehhhHHhhccCCcc
Confidence            233322222256666555442     35665554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=3.1e-33  Score=311.84  Aligned_cols=486  Identities=27%  Similarity=0.322  Sum_probs=300.2

Q ss_pred             CCcEEECCCCccccccchhccCCCCCcEEecccCcCcCCCCCccccCCCCCCEEEcccCcccccCCcccccCCCCccEEe
Q 001497          353 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFD  432 (1066)
Q Consensus       353 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l~  432 (1066)
                      .++.|+++.|-+....-+...+.-+|+.||+++|.+. .. |..+..+.+|+.|+++.|.+. ..| ....++.+|+++.
T Consensus        22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~f-p~~it~l~~L~~ln~s~n~i~-~vp-~s~~~~~~l~~ln   97 (1081)
T KOG0618|consen   22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SF-PIQITLLSHLRQLNLSRNYIR-SVP-SSCSNMRNLQYLN   97 (1081)
T ss_pred             HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cC-CchhhhHHHHhhcccchhhHh-hCc-hhhhhhhcchhhe
Confidence            3777777777665433344455566888888888776 55 667777778888888888776 333 3456677777777


Q ss_pred             cCCCcccccccccCCCCCcccceEEEccCCCCCCcccCcccccCCCccEEEcCCCcCcccCchhhhhcCCCCcEEEccCC
Q 001497          433 AKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND  512 (1066)
Q Consensus       433 l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n  512 (1066)
                      +.+|.+..                            .|..+..+.+|+.++++.|.+. .+|.. ...++.++.+..++|
T Consensus        98 L~~n~l~~----------------------------lP~~~~~lknl~~LdlS~N~f~-~~Pl~-i~~lt~~~~~~~s~N  147 (1081)
T KOG0618|consen   98 LKNNRLQS----------------------------LPASISELKNLQYLDLSFNHFG-PIPLV-IEVLTAEEELAASNN  147 (1081)
T ss_pred             eccchhhc----------------------------CchhHHhhhcccccccchhccC-CCchh-HHhhhHHHHHhhhcc
Confidence            77776542                            3444555556666666666653 44543 345666666777776


Q ss_pred             cccCcCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccC
Q 001497          513 SLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP  592 (1066)
Q Consensus       513 ~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip  592 (1066)
                      ......    +. ..++.+++..|.+.+.++.++.. +..  .|+|++|.+.   -..+..+.+|+.+....|+++ .+.
T Consensus       148 ~~~~~l----g~-~~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~  215 (1081)
T KOG0618|consen  148 EKIQRL----GQ-TSIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELE  215 (1081)
T ss_pred             hhhhhh----cc-ccchhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEE
Confidence            222111    11 12667777777777777766543 333  5888888776   234556777888888888776 333


Q ss_pred             hhhhhcCCCCCEEEccCccccccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCC
Q 001497          593 DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK  672 (1066)
Q Consensus       593 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  672 (1066)
                      .    ..++|+.|+.++|.+....+.  ..-.+|+++++++|+++ .+|.+++.+.+|+.+...+|.++ .+|..+...+
T Consensus       216 ~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~  287 (1081)
T KOG0618|consen  216 I----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRIT  287 (1081)
T ss_pred             e----cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhh
Confidence            2    346788888888887733221  23356788888888877 45677888888888888888885 6777777778


Q ss_pred             CCcEEEccCCcccCCCCccccCCCCCCEEEccCCcccccCCCCCCC---CcccEEEcCCCccccccCcccccCCCCccEE
Q 001497          673 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP---LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTL  749 (1066)
Q Consensus       673 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  749 (1066)
                      +|+.|.+..|.+. -+|....+.++|+.|++..|++. ..|+.+..   .++..+..+.|++. ..|...=...+.|+.|
T Consensus       288 ~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~L  364 (1081)
T KOG0618|consen  288 SLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQEL  364 (1081)
T ss_pred             hHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHH
Confidence            8888888888876 45556667788888888888876 34443221   24555555555554 2222122234566667


Q ss_pred             EccCcccccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCCCCCCC
Q 001497          750 DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDK  829 (1066)
Q Consensus       750 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~  829 (1066)
                      .+.+|.++...-..+.+.++|+.|+|++|++.......+.++..|+.|+||+|+++.. |.+..++.             
T Consensus       365 ylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L-p~tva~~~-------------  430 (1081)
T KOG0618|consen  365 YLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL-PDTVANLG-------------  430 (1081)
T ss_pred             HHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh-hHHHHhhh-------------
Confidence            7777777665555566666777777777776644444556666677777777766633 34333322             


Q ss_pred             CCccccccCCCCCchhhhhhhhhhhhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCcccc
Q 001497          830 PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI  909 (1066)
Q Consensus       830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  909 (1066)
                                                              .|++|...+|++. ..| ++..++.|+++|+|.|+++...
T Consensus       431 ----------------------------------------~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~  468 (1081)
T KOG0618|consen  431 ----------------------------------------RLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVT  468 (1081)
T ss_pred             ----------------------------------------hhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhh
Confidence                                                    5566666666666 455 5666667777777777666332


Q ss_pred             chhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEcccC
Q 001497          910 PLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN  951 (1066)
Q Consensus       910 p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N  951 (1066)
                      -..-...++|++|||++|.=.-..-..|..+..+..+++.-|
T Consensus       469 l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  469 LPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            222222256667777666522233344445555555555555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=2.4e-32  Score=289.97  Aligned_cols=369  Identities=27%  Similarity=0.371  Sum_probs=201.0

Q ss_pred             CCCccEEEccCCccc-ccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCC
Q 001497          525 HKRLRFLDVSNNNFQ-GHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE  603 (1066)
Q Consensus       525 ~~~L~~L~ls~n~l~-~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~  603 (1066)
                      ++-.+-+|+++|.++ +.+|.++-+ +++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+ ..++.|+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LR   81 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLR   81 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhH
Confidence            344555666777766 356665554 666666666666665 55666666666666666666665 443333 2456666


Q ss_pred             EEEccCccccc-cccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCC
Q 001497          604 FLSLSNNSLKG-HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN  682 (1066)
Q Consensus       604 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  682 (1066)
                      .+++.+|++.. -+|..+..+..|..|||++|++. ..|..+....++-+|+|++|+|.......|.+++.|-.|||++|
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence            66666666542 24555556666666666666665 45656666666666666666665222234455666666666666


Q ss_pred             cccCCCCccccCCCCCCEEEccCCcccccCCCCCCCCcccEEEcCCCccccccCcccccCCCCccEEEccCcccc-cccc
Q 001497          683 HLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN-GSIP  761 (1066)
Q Consensus       683 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~p  761 (1066)
                      ++. .+|+.+..+..|+.|+|++|++...-                        -..+..+++|++|.+++.+-+ ..+|
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQ------------------------LrQLPsmtsL~vLhms~TqRTl~N~P  215 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQ------------------------LRQLPSMTSLSVLHMSNTQRTLDNIP  215 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhhHHH------------------------HhcCccchhhhhhhcccccchhhcCC
Confidence            665 44445556666666666666553110                        002223444555555543322 2345


Q ss_pred             hhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCCCCCCCCCccccccCCCC
Q 001497          762 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQ  841 (1066)
Q Consensus       762 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (1066)
                      ..+..+.+|..+|++.|.+. .+|+.+..+++|+.|+||+|+|+..-- +.+.                           
T Consensus       216 tsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~-~~~~---------------------------  266 (1255)
T KOG0444|consen  216 TSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM-TEGE---------------------------  266 (1255)
T ss_pred             CchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec-cHHH---------------------------
Confidence            55555555555666655555 555555555666666666655542210 0000                           


Q ss_pred             CchhhhhhhhhhhhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCc-cccchhccCCCCCC
Q 001497          842 GSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT-GTIPLTFSNLRHIE  920 (1066)
Q Consensus       842 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~  920 (1066)
                                                -..+.+|+||.|+++ ..|..+..++.|+.|.+.+|+++ .-||+.++++.+|+
T Consensus       267 --------------------------W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le  319 (1255)
T KOG0444|consen  267 --------------------------WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE  319 (1255)
T ss_pred             --------------------------Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence                                      013455555555555 45555555555555555555544 23455555555555


Q ss_pred             EEeCCCCcCccccCccccCCCCCCEEEcccCcccccCCCCccccCccCccccCCCCCCCCC
Q 001497          921 SLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGL  981 (1066)
Q Consensus       921 ~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~  981 (1066)
                      .+..++|++. ..|.+++.+..|+.|.|++|+|- ..|+...-+..++..++..||.+--+
T Consensus       320 vf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMP  378 (1255)
T KOG0444|consen  320 VFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMP  378 (1255)
T ss_pred             HHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCC
Confidence            5555555555 55555555555555555555554 23433334444555555555555443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=5.9e-31  Score=293.76  Aligned_cols=474  Identities=27%  Similarity=0.329  Sum_probs=359.8

Q ss_pred             cCcccccCCCccEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccCcCCCCCCCCCCccEEEccCCcccccCChhhhh
Q 001497          469 FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD  548 (1066)
Q Consensus       469 ~~~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~  548 (1066)
                      +|..+..-..++.+.+..|-+... |-.+...+-+|+.|++++|.+. .+|.++..+.+|+.|+++.|.+. ..|.....
T Consensus        13 ip~~i~~~~~~~~ln~~~N~~l~~-pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~   89 (1081)
T KOG0618|consen   13 IPEQILNNEALQILNLRRNSLLSR-PLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSN   89 (1081)
T ss_pred             cchhhccHHHHHhhhccccccccC-chHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhh
Confidence            344333333466777777765542 3444455666999999988875 56778888899999999999997 78876665


Q ss_pred             cCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEccCccccccccccccCCCCCCe
Q 001497          549 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW  628 (1066)
Q Consensus       549 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  628 (1066)
                       +.+|+++.|.+|.+. ..|..+..+++|++|+++.|.+. .+|..+. .++.++.+..++|......+.    .. .+.
T Consensus        90 -~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N~~~~~lg~----~~-ik~  160 (1081)
T KOG0618|consen   90 -MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNNEKIQRLGQ----TS-IKK  160 (1081)
T ss_pred             -hhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcchhhhhhcc----cc-chh
Confidence             889999999999988 78999999999999999999997 8998885 688899999999932222222    22 888


Q ss_pred             EeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCCCccccCCCCCCEEEccCCcc
Q 001497          629 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI  708 (1066)
Q Consensus       629 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  708 (1066)
                      +++..|.+.+.++..+..++.  .|++++|.+.   -..+.++.+|+.|....|++....    -.-++|+.|+.++|.+
T Consensus       161 ~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l  231 (1081)
T KOG0618|consen  161 LDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPL  231 (1081)
T ss_pred             hhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcc
Confidence            999999998888888877766  7999999886   344678889999999999886322    2357899999999999


Q ss_pred             cccCCCCCCCCcccEEEcCCCccccccCcccccCCCCccEEEccCcccccccchhhhCCCCCCEEeCcCCcccccCChhh
Q 001497          709 SGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL  788 (1066)
Q Consensus       709 ~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~  788 (1066)
                      + ..-..+.+.++++++++.|+++ .+|. ++..|.+|+.++..+|.++ .+|..+...++|+.|+...|.+. .+|...
T Consensus       232 ~-~~~~~p~p~nl~~~dis~n~l~-~lp~-wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~l  306 (1081)
T KOG0618|consen  232 T-TLDVHPVPLNLQYLDISHNNLS-NLPE-WIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFL  306 (1081)
T ss_pred             e-eeccccccccceeeecchhhhh-cchH-HHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcc
Confidence            8 5556677889999999999997 5774 9999999999999999996 78888888999999999999998 677788


Q ss_pred             hcCCCCCEEECcCCcCcccCCccccCCcc-ccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhhcccccc--cccc
Q 001497          789 CRLNQLQLLDLSDNNLHGLIPSCFDNTTL-HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY--AYQG  865 (1066)
Q Consensus       789 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  865 (1066)
                      ..+++|+.|||..|++...++..|.-... ....+...+......       ..+.......+.+..+.+....  ....
T Consensus       307 e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp-------~~~e~~~~~Lq~LylanN~Ltd~c~p~l  379 (1081)
T KOG0618|consen  307 EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP-------SYEENNHAALQELYLANNHLTDSCFPVL  379 (1081)
T ss_pred             cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc-------cccchhhHHHHHHHHhcCcccccchhhh
Confidence            88999999999999998766644433221 111111111000000       0111112234444444443332  1222


Q ss_pred             ccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccCCCCCCE
Q 001497          866 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAI  945 (1066)
Q Consensus       866 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~  945 (1066)
                      .....|+.|+|++|+|.......+.++..|+.|+||+|+++ .+|.++.++..|++|...+|+|. ..| .+..++.|+.
T Consensus       380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~  456 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV  456 (1081)
T ss_pred             ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence            34668999999999998544455889999999999999999 78899999999999999999998 677 8899999999


Q ss_pred             EEcccCccccc-CCCCccccCccCccccCCCCCCC
Q 001497          946 FIVAYNNLSGK-IPEWTAQFATFNKSSYDGNPFLC  979 (1066)
Q Consensus       946 l~ls~N~l~g~-ip~~~~~~~~~~~~~~~gN~~lc  979 (1066)
                      +|+|.|+|+-. +|. .....+++..++.||+++-
T Consensus       457 lDlS~N~L~~~~l~~-~~p~p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  457 LDLSCNNLSEVTLPE-ALPSPNLKYLDLSGNTRLV  490 (1081)
T ss_pred             Eecccchhhhhhhhh-hCCCcccceeeccCCcccc
Confidence            99999999754 444 3333678888999999754

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=2.7e-27  Score=239.76  Aligned_cols=284  Identities=21%  Similarity=0.185  Sum_probs=191.0

Q ss_pred             CCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccC-ccCccccChhhhh
Q 001497          519 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN-NKLTGEIPDHLAM  597 (1066)
Q Consensus       519 ~~~~~~~~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~ip~~~~~  597 (1066)
                      ..|-.-.+....++|..|+++ .||...|+.+++|+.||||+|+|+.+.|++|.+++++..|-+.+ |+|+ .+|...|.
T Consensus        60 eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~  137 (498)
T KOG4237|consen   60 EVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFG  137 (498)
T ss_pred             cCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhh
Confidence            333334566778899999998 89999998899999999999999999999999999888877766 8998 89999999


Q ss_pred             cCCCCCEEEccCccccccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEE
Q 001497          598 CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHI  677 (1066)
Q Consensus       598 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  677 (1066)
                      ++.+++.|.+.-|++.....+.|..+++|..|.+.+|.+..+-..+|..+.+++.+.+..|.+-.     ..+++.+...
T Consensus       138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~  212 (498)
T KOG4237|consen  138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADD  212 (498)
T ss_pred             hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhH
Confidence            99999999999999998888999999999999999999885555588888999999888887421     1222222211


Q ss_pred             EccCCcccCCCCccccCCCCCCEEEccCCcccccCCCCCCCC--cccEEEcCCCccccccCcccccCCCCccEEEccCcc
Q 001497          678 VMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL--SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY  755 (1066)
Q Consensus       678 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~  755 (1066)
                             ....|..+++.+...-..+.+.++...-+..|...  ++..-..+.+...+..|...|..+++|+.|+|++|+
T Consensus       213 -------~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~  285 (498)
T KOG4237|consen  213 -------LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK  285 (498)
T ss_pred             -------HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence                   01122233333333334444444443333333222  221112222333344455556666666666666666


Q ss_pred             cccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCc
Q 001497          756 LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT  816 (1066)
Q Consensus       756 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  816 (1066)
                      ++++-+.||.+...+++|.|..|++.......|.++..|++|+|.+|+|+...|..|....
T Consensus       286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~  346 (498)
T KOG4237|consen  286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF  346 (498)
T ss_pred             cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence            6666666666666666666666666655555666666666666666666666666665544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=2.5e-27  Score=240.04  Aligned_cols=398  Identities=22%  Similarity=0.271  Sum_probs=253.5

Q ss_pred             EEEccCCcccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEccC
Q 001497          530 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN  609 (1066)
Q Consensus       530 ~L~ls~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~  609 (1066)
                      ..+.++-.++ ++|.++   .+.-+.++|..|+|+.+.|.+|+.+++|+.|||++|.|+ .|....|.++.+|..|-+.+
T Consensus        50 ~VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg  124 (498)
T KOG4237|consen   50 IVDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYG  124 (498)
T ss_pred             eEEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhc
Confidence            4566666677 788775   468889999999999999999999999999999999998 78777788999988777766


Q ss_pred             -ccccccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCC
Q 001497          610 -NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI  688 (1066)
Q Consensus       610 -n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  688 (1066)
                       |+|+......|.++..|+-|.+.-|++.....+.|..+++|..|.+.+|.+....-..|..+.+++.+.+..|.+.   
T Consensus       125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i---  201 (498)
T KOG4237|consen  125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI---  201 (498)
T ss_pred             CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc---
Confidence             8999888889999999999999999999888889999999999999999997444448888899999988887653   


Q ss_pred             CccccCCCCCCEEEccCCcccccCCCCCCCCcccEEEcCCCccccccCcccccCC-CCccEEEccCcccccccc-hhhhC
Q 001497          689 PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC-SSLVTLDLSYNYLNGSIP-DWIDG  766 (1066)
Q Consensus       689 ~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~p-~~~~~  766 (1066)
                        ..++++.+.. ++..|.+.........+..+     .+.++. +++...|.-. .++..=-.+.+...+.-| ..|..
T Consensus       202 --cdCnL~wla~-~~a~~~ietsgarc~~p~rl-----~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~  272 (498)
T KOG4237|consen  202 --CDCNLPWLAD-DLAMNPIETSGARCVSPYRL-----YYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK  272 (498)
T ss_pred             --cccccchhhh-HHhhchhhcccceecchHHH-----HHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh
Confidence              3455554443 22223322111111111112     222221 2332233222 122211222333333444 57999


Q ss_pred             CCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCCCC-----CCCCCccccccC---
Q 001497          767 LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS-----PDKPFKTSFSIS---  838 (1066)
Q Consensus       767 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---  838 (1066)
                      +++|++|+|++|+++++-+.+|.+...++.|.|..|++.......|.++.-+......++     ....|...++..   
T Consensus       273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~  352 (498)
T KOG4237|consen  273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN  352 (498)
T ss_pred             cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeee
Confidence            999999999999999999999999999999999999999887777877654333222111     001111100000   


Q ss_pred             --CCCCchhhhhhhhhhhh-ccccccccccccccccceEEcc-------------------------------------C
Q 001497          839 --GPQGSVEKKILEIFEFT-TKNIAYAYQGRVLSLLAGLDLS-------------------------------------C  878 (1066)
Q Consensus       839 --~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~L~~L~Ls-------------------------------------~  878 (1066)
                        ..+........=..++. .+.......-.....++.++++                                     +
T Consensus       353 l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSn  432 (498)
T KOG4237|consen  353 LLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSN  432 (498)
T ss_pred             hccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcc
Confidence              00000000000000000 0000000000111122333333                                     2


Q ss_pred             CcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEcccC
Q 001497          879 NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN  951 (1066)
Q Consensus       879 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N  951 (1066)
                      +.+. .+|..+.  ..-.+|++.+|.++ .+|..  .+.+| .+|+|+|+++..--..|.+++.|.+|-+|||
T Consensus       433 k~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  433 KLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             cchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            2222 3333332  24567888888888 67766  56777 8899999888766778888888888888887

>PLN03210 Resistant to P

Probab=99.90  E-value=3.8e-22  Score=253.33  Aligned_cols=339  Identities=22%  Similarity=0.268  Sum_probs=194.1

Q ss_pred             CCCCCCCccEEEccCCc------ccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChh
Q 001497          521 PIHSHKRLRFLDVSNNN------FQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDH  594 (1066)
Q Consensus       521 ~~~~~~~L~~L~ls~n~------l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~  594 (1066)
                      +|..+++|+.|.+..+.      +...+|..+....++|+.|++.++.+. .+|..| ...+|+.|++++|++. .++..
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~  629 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG  629 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence            35566677777665442      222345544442345677777666665 445555 3566677777776665 55555


Q ss_pred             hhhcCCCCCEEEccCccccccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCC
Q 001497          595 LAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGL  674 (1066)
Q Consensus       595 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  674 (1066)
                      . ..+++|+.|+++++...+.+| .+..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|
T Consensus       630 ~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL  706 (1153)
T PLN03210        630 V-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL  706 (1153)
T ss_pred             c-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence            4 356667777776655433444 35566667777776666555666666666677777776665444555544 56666


Q ss_pred             cEEEccCCcccCCCCccccCCCCCCEEEccCCcccccCCCCCCCCcccEEEcCCCccc---c---ccCcccccCCCCccE
Q 001497          675 QHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH---G---QLKEGTFFNCSSLVT  748 (1066)
Q Consensus       675 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~---~---~~~~~~~~~~~~L~~  748 (1066)
                      +.|++++|...+.+|..   ..+|+.|++++|.+. .+|..+...+|+.|.+.++...   +   .++...+..+++|+.
T Consensus       707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~  782 (1153)
T PLN03210        707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR  782 (1153)
T ss_pred             CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence            66666666544444432   345666666666654 4454444455555555543211   0   011112223456666


Q ss_pred             EEccCcccccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCCCCCC
Q 001497          749 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPD  828 (1066)
Q Consensus       749 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~  828 (1066)
                      |++++|...+.+|.+++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..                 
T Consensus       783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-----------------  844 (1153)
T PLN03210        783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI-----------------  844 (1153)
T ss_pred             eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----------------
Confidence            6666666555666666666666666666654444555444 5666666666665433222211                 


Q ss_pred             CCCccccccCCCCCchhhhhhhhhhhhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCc-cCcc
Q 001497          829 KPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN-NLTG  907 (1066)
Q Consensus       829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~  907 (1066)
                                                             .++++.|+|++|.++ .+|..++.+++|+.|+|++| +++ 
T Consensus       845 ---------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-  883 (1153)
T PLN03210        845 ---------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-  883 (1153)
T ss_pred             ---------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-
Confidence                                                   124666777777766 56666677777777777663 344 


Q ss_pred             ccchhccCCCCCCEEeCCCCc
Q 001497          908 TIPLTFSNLRHIESLDLSYNK  928 (1066)
Q Consensus       908 ~~p~~~~~l~~L~~L~Ls~N~  928 (1066)
                      .+|..+..+++|+.++++++.
T Consensus       884 ~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        884 RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ccCcccccccCCCeeecCCCc
Confidence            456666666777777776663

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=2.3e-22  Score=255.25  Aligned_cols=340  Identities=22%  Similarity=0.278  Sum_probs=235.5

Q ss_pred             CChhhhhcCCCCcEEEccCCc------ccccCCccccCc-ccCCEEEccCccCccccChhhhhcCCCCCEEEccCccccc
Q 001497          542 IPVEIGDILPSLVYFNISMNA------LDGSIPSSFGNV-IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG  614 (1066)
Q Consensus       542 ip~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l-~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~  614 (1066)
                      +....+..+++|+.|.+..+.      +...+|..|..+ .+|+.|++.++.+. .+|..+  ...+|+.|++++|.+. 
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-  624 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-
Confidence            334445557788888776543      233456666555 35888888888876 777765  4678888888888776 


Q ss_pred             cccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCCCccccC
Q 001497          615 HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR  694 (1066)
Q Consensus       615 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  694 (1066)
                      .++..+..+++|+.|+|+++...+.+|. ++.+++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ +
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~  702 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N  702 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence            4566677788888888887765556663 6777888888888877666778888888888888888776555666554 6


Q ss_pred             CCCCCEEEccCCcccccCCCCCCCCcccEEEcCCCccccccCcccccCCCCccEEEccCcccc-------cccchhhhCC
Q 001497          695 LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN-------GSIPDWIDGL  767 (1066)
Q Consensus       695 l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~p~~~~~l  767 (1066)
                      +++|+.|++++|...+.+|..  ..+++.|++++|.+. .+|. .+ .+++|+.|++.++...       ...|..+...
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~-~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~  777 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPS-NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS  777 (1153)
T ss_pred             CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccc-cc-cccccccccccccchhhccccccccchhhhhcc
Confidence            778888888888766666643  347788888888764 4554 22 5677777777764321       1222233345


Q ss_pred             CCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCCCCCCCCCccccccCCCCCchhhh
Q 001497          768 SQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKK  847 (1066)
Q Consensus       768 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  847 (1066)
                      ++|+.|++++|...+.+|..++++++|+.|++++|+.-+.+|... +                                 
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~---------------------------------  823 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N---------------------------------  823 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C---------------------------------
Confidence            678888888887777788888888888888888776444444332 1                                 


Q ss_pred             hhhhhhhhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCC-
Q 001497          848 ILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSY-  926 (1066)
Q Consensus       848 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-  926 (1066)
                                          ++.|+.|++++|.....+|..   .++|+.|+|++|.++ .+|..+..+++|+.|+|++ 
T Consensus       824 --------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        824 --------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             --------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence                                336778888877655555543   356778888888887 6777888888888888887 


Q ss_pred             CcCccccCccccCCCCCCEEEcccC
Q 001497          927 NKLSGKIPRQLVDLNTLAIFIVAYN  951 (1066)
Q Consensus       927 N~l~~~ip~~l~~l~~L~~l~ls~N  951 (1066)
                      |++. .+|..+..++.|+.++++++
T Consensus       880 ~~L~-~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        880 NNLQ-RVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CCcC-ccCcccccccCCCeeecCCC
Confidence            4555 47777777888888887776

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.4e-21  Score=228.21  Aligned_cols=266  Identities=27%  Similarity=0.326  Sum_probs=138.8

Q ss_pred             CCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEccCccccccccccccCCCCCCeEec
Q 001497          552 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL  631 (1066)
Q Consensus       552 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  631 (1066)
                      .-..|+++.+.++ .+|..+.  ++|+.|++++|+++ .+|..    .++|++|++++|+++.. |.   ..++|+.|++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLTSL-PV---LPPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccCcc-cC---cccccceeec
Confidence            4556777777777 4565554  36777777777776 56642    35666666666666632 32   1245555566


Q ss_pred             cCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCCCccccCCCCCCEEEccCCccccc
Q 001497          632 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS  711 (1066)
Q Consensus       632 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  711 (1066)
                      ++|.+. .+|..+   ++|+.|++++|+++ .+|..   .++|+.|++++|++++. |..   ..+|+.|++++|.++  
T Consensus       270 s~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~--  335 (788)
T PRK15387        270 FSNPLT-HLPALP---SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLT--  335 (788)
T ss_pred             cCCchh-hhhhch---hhcCEEECcCCccc-ccccc---ccccceeECCCCccccC-CCC---cccccccccccCccc--
Confidence            655554 233211   34555555555554 23321   23444444444444431 211   112333334444333  


Q ss_pred             CCCCCCCCcccEEEcCCCccccccCcccccCCCCccEEEccCcccccccchhhhCCCCCCEEeCcCCcccccCChhhhcC
Q 001497          712 LPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL  791 (1066)
Q Consensus       712 ~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  791 (1066)
                                            .+|.  +  ..+|+.|+|++|++++ +|..   .++|+.|++++|.+++ +|..   .
T Consensus       336 ----------------------~LP~--l--p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~  381 (788)
T PRK15387        336 ----------------------SLPT--L--PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---P  381 (788)
T ss_pred             ----------------------cccc--c--ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---c
Confidence                                  1222  0  1356666666666663 3332   2345566666666663 4432   2


Q ss_pred             CCCCEEECcCCcCcccCCccccCCccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhhcccccccccccccccc
Q 001497          792 NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL  871 (1066)
Q Consensus       792 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  871 (1066)
                      .+|+.|++++|++++. |..                                                        .+.|
T Consensus       382 ~~L~~LdLs~N~Lt~L-P~l--------------------------------------------------------~s~L  404 (788)
T PRK15387        382 SGLKELIVSGNRLTSL-PVL--------------------------------------------------------PSEL  404 (788)
T ss_pred             cccceEEecCCcccCC-CCc--------------------------------------------------------ccCC
Confidence            3566666666666532 211                                                        0145


Q ss_pred             ceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccC
Q 001497          872 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVD  939 (1066)
Q Consensus       872 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~  939 (1066)
                      +.|++++|+|++ +|...   .+|+.|+|++|+|+ .+|..|.++++|+.|+|++|+|+|.+|..+..
T Consensus       405 ~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        405 KELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             CEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            566666666663 45432   34556666666666 55666666666666666666666666655533

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=7.1e-21  Score=222.31  Aligned_cols=268  Identities=26%  Similarity=0.332  Sum_probs=205.1

Q ss_pred             CCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEE
Q 001497          526 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL  605 (1066)
Q Consensus       526 ~~L~~L~ls~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L  605 (1066)
                      ..-..|+++.+.++ .+|..+.   ++|+.|++++|+++. +|..   .++|++|++++|+++ .+|..    .++|+.|
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L  267 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPVL----PPGLLEL  267 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccCc----cccccee
Confidence            34568999999998 7998764   589999999999994 5643   578999999999999 78753    4789999


Q ss_pred             EccCccccccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCccc
Q 001497          606 SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE  685 (1066)
Q Consensus       606 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  685 (1066)
                      ++++|.++. +|..   ..+|+.|++++|+++ .+|..   .++|+.|++++|++++ +|...   .+|+.|++++|+++
T Consensus       268 ~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~  335 (788)
T PRK15387        268 SIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLT  335 (788)
T ss_pred             eccCCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCCc---ccccccccccCccc
Confidence            999999985 3432   357899999999998 45543   4789999999999984 55432   46888999999998


Q ss_pred             CCCCccccCCCCCCEEEccCCcccccCCCCCCCCcccEEEcCCCccccccCcccccCCCCccEEEccCcccccccchhhh
Q 001497          686 GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWID  765 (1066)
Q Consensus       686 ~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~  765 (1066)
                      + +|..   ..+|+.|++++|++++ +|.                        .   .++|+.|++++|++++ +|..  
T Consensus       336 ~-LP~l---p~~Lq~LdLS~N~Ls~-LP~------------------------l---p~~L~~L~Ls~N~L~~-LP~l--  380 (788)
T PRK15387        336 S-LPTL---PSGLQELSVSDNQLAS-LPT------------------------L---PSELYKLWAYNNRLTS-LPAL--  380 (788)
T ss_pred             c-cccc---ccccceEecCCCccCC-CCC------------------------C---Ccccceehhhcccccc-Cccc--
Confidence            5 4532   2578899999998873 332                        1   1345666777777763 4543  


Q ss_pred             CCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCCCCCCCCCccccccCCCCCchh
Q 001497          766 GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVE  845 (1066)
Q Consensus       766 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  845 (1066)
                       ..+|+.|++++|++++ +|..   .++|+.|++++|++++ +|..+                                 
T Consensus       381 -~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---------------------------------  421 (788)
T PRK15387        381 -PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---------------------------------  421 (788)
T ss_pred             -ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---------------------------------
Confidence             2467888888888874 4433   3578899999999885 34321                                 


Q ss_pred             hhhhhhhhhhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCC
Q 001497          846 KKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL  916 (1066)
Q Consensus       846 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  916 (1066)
                                             ..|+.|++++|+|+ .+|..|++++.|+.|+|++|.|+|.+|..+..+
T Consensus       422 -----------------------~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        422 -----------------------SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             -----------------------hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence                                   14677999999998 789999999999999999999999999887554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=5.1e-19  Score=208.71  Aligned_cols=118  Identities=25%  Similarity=0.366  Sum_probs=64.5

Q ss_pred             CCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEccCccccccccccccCCCCCCeEec
Q 001497          552 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL  631 (1066)
Q Consensus       552 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  631 (1066)
                      +...|+++++.++ .+|..+.  +.++.|++++|+++ .+|..++   .+|+.|++++|.++. +|..+.  .+|+.|++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEEC
Confidence            5667777777777 3455442  46777777777777 6776553   467777777777663 333222  24555555


Q ss_pred             cCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCccc
Q 001497          632 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE  685 (1066)
Q Consensus       632 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  685 (1066)
                      ++|.+. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|+++
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence            555554 3343332  24555555555554 2333322  23444444444443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=6.2e-19  Score=208.05  Aligned_cols=158  Identities=24%  Similarity=0.362  Sum_probs=79.5

Q ss_pred             cEEEccCCcccccCChhhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEcc
Q 001497          529 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS  608 (1066)
Q Consensus       529 ~~L~ls~n~l~~~ip~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~  608 (1066)
                      ..|+++++.++ .+|..+   .+.++.|++++|.++ .+|..+.  .+|+.|++++|+++ .+|..+.   .+|+.|+++
T Consensus       181 ~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls  249 (754)
T PRK15370        181 TELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMELS  249 (754)
T ss_pred             eEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEECc
Confidence            34455555544 344433   234555555555555 2333322  35555555555555 4554432   345556666


Q ss_pred             CccccccccccccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCC
Q 001497          609 NNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI  688 (1066)
Q Consensus       609 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  688 (1066)
                      +|.+. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|.++. +
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-L  319 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-L  319 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-C
Confidence            65555 2333332  35666666666665 3454443  36777777777666 3443332  345666666666653 2


Q ss_pred             CccccCCCCCCEEEccCCccc
Q 001497          689 PVEFCRLDSLQILDISDNNIS  709 (1066)
Q Consensus       689 ~~~~~~l~~L~~L~l~~n~~~  709 (1066)
                      |..+  .++|+.|++++|.++
T Consensus       320 P~~l--~~sL~~L~Ls~N~Lt  338 (754)
T PRK15370        320 PETL--PPGLKTLEAGENALT  338 (754)
T ss_pred             Cccc--cccceeccccCCccc
Confidence            3222  135555555555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=9e-19  Score=194.13  Aligned_cols=57  Identities=26%  Similarity=0.224  Sum_probs=28.3

Q ss_pred             EEccCccCccccChhhhhcCCCCCEEEccCcccccc----ccccccCCCCCCeEeccCccc
Q 001497          580 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH----IFSRIFSLRNLRWLLLEGNHF  636 (1066)
Q Consensus       580 L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l  636 (1066)
                      |+|..+.+++.--...+..+..|++|+++++.++..    ++..+...+.+++++++++.+
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~   63 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET   63 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc
Confidence            556666665332233334455566666666665432    233333444455555555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=1.6e-18  Score=192.20  Aligned_cols=207  Identities=24%  Similarity=0.263  Sum_probs=101.4

Q ss_pred             EEEccCCccc-ccCCccccCcccCCEEEccCccCccc----cChhhhhcCCCCCEEEccCccccc------cccccccCC
Q 001497          555 YFNISMNALD-GSIPSSFGNVIFLQFLDLSNNKLTGE----IPDHLAMCCVNLEFLSLSNNSLKG------HIFSRIFSL  623 (1066)
Q Consensus       555 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~----ip~~~~~~~~~L~~L~L~~n~l~~------~~~~~~~~l  623 (1066)
                      .|+|..+.++ ...+..+..+..|++++++++.++..    ++..+ ...+++++++++++.+.+      .++..+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHH-hhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            4567777776 33445556677788888888877532    33333 355668888888877652      112233334


Q ss_pred             CCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCC---CcEEEccCCcccC----CCCccccCC-
Q 001497          624 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG---LQHIVMPKNHLEG----PIPVEFCRL-  695 (1066)
Q Consensus       624 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~---L~~L~l~~n~l~~----~~~~~~~~l-  695 (1066)
                      ++|+.|++++|.+.                        +..+..+..+..   |++|++++|++.+    .+...+..+ 
T Consensus        81 ~~L~~L~l~~~~~~------------------------~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~  136 (319)
T cd00116          81 CGLQELDLSDNALG------------------------PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP  136 (319)
T ss_pred             CceeEEEccCCCCC------------------------hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCC
Confidence            44444444444433                        222222222222   4444444443331    111122233 


Q ss_pred             CCCCEEEccCCcccccCCCCCCCCcccEEEcCCCccccccCcccccCCCCccEEEccCcccccc----cchhhhCCCCCC
Q 001497          696 DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS----IPDWIDGLSQLS  771 (1066)
Q Consensus       696 ~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~  771 (1066)
                      ++|+.|++++|.+++....                   .+.. .+..+++|+.|++++|.+++.    ++..+..+++|+
T Consensus       137 ~~L~~L~L~~n~l~~~~~~-------------------~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~  196 (319)
T cd00116         137 PALEKLVLGRNRLEGASCE-------------------ALAK-ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE  196 (319)
T ss_pred             CCceEEEcCCCcCCchHHH-------------------HHHH-HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCC
Confidence            4455555555544421110                   1111 344455566666666665531    223344445666


Q ss_pred             EEeCcCCccccc----CChhhhcCCCCCEEECcCCcCcc
Q 001497          772 HLNLAHNNLEGE----VPIQLCRLNQLQLLDLSDNNLHG  806 (1066)
Q Consensus       772 ~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~  806 (1066)
                      .|++++|.+++.    ++..+..+++|++|++++|++++
T Consensus       197 ~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         197 VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             EEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence            666666665532    22334455666666666666553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=6.3e-18  Score=151.84  Aligned_cols=160  Identities=31%  Similarity=0.490  Sum_probs=88.5

Q ss_pred             CCCCccEEEccCcccccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCcccccc
Q 001497          742 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESY  821 (1066)
Q Consensus       742 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~  821 (1066)
                      ++.+.+.|.||+|+++ .+|..++.+.+|+.|++.+|++. ..|..++.++.|+.|+++-|++. ..|..|+.+      
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~------  101 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF------  101 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC------
Confidence            3344455555555555 33444555555555555555555 45555555555555555555554 334444432      


Q ss_pred             CCCCCCCCCCccccccCCCCCchhhhhhhhhhhhccccccccccccccccceEEccCCcccC-cCCcCCCCCCCCCEEEC
Q 001497          822 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLTRIQTLNL  900 (1066)
Q Consensus       822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L  900 (1066)
                                                                     +.|..|||++|++.. ..|..|..++.|+.|+|
T Consensus       102 -----------------------------------------------p~levldltynnl~e~~lpgnff~m~tlralyl  134 (264)
T KOG0617|consen  102 -----------------------------------------------PALEVLDLTYNNLNENSLPGNFFYMTTLRALYL  134 (264)
T ss_pred             -----------------------------------------------chhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence                                                           244555555555532 34555555666666666


Q ss_pred             cCccCccccchhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEcccCcccccCCC
Q 001497          901 SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE  959 (1066)
Q Consensus       901 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~ip~  959 (1066)
                      ++|.|. .+|..++++++|+.|.++.|.+- ..|..++.++.|+.|.+.+|+++-..|+
T Consensus       135 ~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  135 GDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             cCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh
Confidence            666665 55555666666666666666655 5566666666666666666666655554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=1.5e-17  Score=149.51  Aligned_cols=164  Identities=30%  Similarity=0.495  Sum_probs=138.0

Q ss_pred             CCcccEEEcCCCccccccCcccccCCCCccEEEccCcccccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEE
Q 001497          718 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLL  797 (1066)
Q Consensus       718 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  797 (1066)
                      ...++.|.+++|+++ .+|+ .++.+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus        32 ~s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            334444445555443 4555 6888999999999999998 77888999999999999999998 899999999999999


Q ss_pred             ECcCCcCcc-cCCccccCCccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhhccccccccccccccccceEEc
Q 001497          798 DLSDNNLHG-LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL  876 (1066)
Q Consensus       798 ~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L  876 (1066)
                      ||..|++.. ..|.-|..                                                     ++.|+.|+|
T Consensus       108 dltynnl~e~~lpgnff~-----------------------------------------------------m~tlralyl  134 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFY-----------------------------------------------------MTTLRALYL  134 (264)
T ss_pred             hccccccccccCCcchhH-----------------------------------------------------HHHHHHHHh
Confidence            999999864 33444322                                                     336888999


Q ss_pred             cCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccCCC
Q 001497          877 SCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN  941 (1066)
Q Consensus       877 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  941 (1066)
                      +.|.+. .+|+.++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+|+++ .+|..++++.
T Consensus       135 ~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~  196 (264)
T KOG0617|consen  135 GDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD  196 (264)
T ss_pred             cCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence            999998 88999999999999999999998 89999999999999999999999 8888877754

>PLN03150 hypothetical protein; Provisional

Probab=99.59  E-value=3.2e-15  Score=176.86  Aligned_cols=118  Identities=36%  Similarity=0.632  Sum_probs=106.4

Q ss_pred             ccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEcc
Q 001497          870 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  949 (1066)
Q Consensus       870 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls  949 (1066)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+.++++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccCCCCccc-cCccCccccCCCCCCCCCCC-CCCC
Q 001497          950 YNNLSGKIPEWTAQ-FATFNKSSYDGNPFLCGLPL-PICR  987 (1066)
Q Consensus       950 ~N~l~g~ip~~~~~-~~~~~~~~~~gN~~lc~~~l-~~c~  987 (1066)
                      +|+++|.+|..... +.......+.+|+++|+.|. ..|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999975443 23445677899999999764 3563

>PLN03150 hypothetical protein; Provisional

Probab=99.33  E-value=3.1e-12  Score=151.60  Aligned_cols=114  Identities=32%  Similarity=0.515  Sum_probs=100.8

Q ss_pred             CCCEEECcCCcCcccCCccccCCccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhhccccccccccccccccc
Q 001497          793 QLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA  872 (1066)
Q Consensus       793 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  872 (1066)
                      .++.|+|++|.++|.+|..+..++                                                     .|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~-----------------------------------------------------~L~  445 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLR-----------------------------------------------------HLQ  445 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCC-----------------------------------------------------CCC
Confidence            367789999999988888776644                                                     799


Q ss_pred             eEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccCC-CCCCEEEcccC
Q 001497          873 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL-NTLAIFIVAYN  951 (1066)
Q Consensus       873 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~l~ls~N  951 (1066)
                      .|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..+..+ ..+..+++++|
T Consensus       446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999998774 46778999999


Q ss_pred             cccccCCC
Q 001497          952 NLSGKIPE  959 (1066)
Q Consensus       952 ~l~g~ip~  959 (1066)
                      ...+.+|.
T Consensus       526 ~~lc~~p~  533 (623)
T PLN03150        526 AGLCGIPG  533 (623)
T ss_pred             ccccCCCC
Confidence            75544443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.22  E-value=3.5e-13  Score=144.43  Aligned_cols=173  Identities=34%  Similarity=0.496  Sum_probs=121.0

Q ss_pred             ccEEEcCCCccccccCcccccCCCCccEEEccCcccccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECc
Q 001497          721 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS  800 (1066)
Q Consensus       721 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  800 (1066)
                      ....+++.|++. ++|. .+..+-.|+.+.|..|.+. .+|..+.++..|+.|+|+.|+++ ..|..++.|+ |+.|-++
T Consensus        77 t~~aDlsrNR~~-elp~-~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPE-EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             hhhhhccccccc-cCch-HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence            345566666664 5555 5556666666666666666 56666666666777777777766 5566666553 6666666


Q ss_pred             CCcCcccCCccccCCccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhhccccccccccccccccceEEccCCc
Q 001497          801 DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK  880 (1066)
Q Consensus       801 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~  880 (1066)
                      +|+++.. |..++.                                                     +..|..||.|.|.
T Consensus       152 NNkl~~l-p~~ig~-----------------------------------------------------~~tl~~ld~s~ne  177 (722)
T KOG0532|consen  152 NNKLTSL-PEEIGL-----------------------------------------------------LPTLAHLDVSKNE  177 (722)
T ss_pred             cCccccC-Cccccc-----------------------------------------------------chhHHHhhhhhhh
Confidence            6666533 322221                                                     2367778888888


Q ss_pred             ccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEcccCccccc
Q 001497          881 LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGK  956 (1066)
Q Consensus       881 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~  956 (1066)
                      +. .+|..++.+.+|+.|++..|++. ..|..+..|+ |..||+|.|+++ .||-.|..|+.|++|-|.+|.|..+
T Consensus       178 i~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  178 IQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             hh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence            87 67778888888888888888888 5666666554 778888888888 8888888888888888888888754

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.16  E-value=1.2e-12  Score=140.54  Aligned_cols=194  Identities=28%  Similarity=0.445  Sum_probs=131.9

Q ss_pred             CCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCCCccccCCCCCCEEEccCCcccccCCCCCCCCcccEEEcC
Q 001497          648 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS  727 (1066)
Q Consensus       648 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~  727 (1066)
                      .--...|++.|++. ++|..+..+..|+.+.+..|.+. .+|.+++++..|+.+|++.|+++ ..|..            
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~------------  139 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDG------------  139 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChh------------
Confidence            34455677777776 67777777777777777777776 67777888888888888888776 22322            


Q ss_pred             CCccccccCcccccCCCCccEEEccCcccccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCccc
Q 001497          728 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL  807 (1066)
Q Consensus       728 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  807 (1066)
                                  +..| -|+.|-+++|+++ .+|..++....|..||.+.|.+. .+|..++++.+|+.|.+..|++...
T Consensus       140 ------------lC~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~l  204 (722)
T KOG0532|consen  140 ------------LCDL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDL  204 (722)
T ss_pred             ------------hhcC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhC
Confidence                        2222 2455666666665 55666666666777777777766 5666777777777777777776644


Q ss_pred             CCccccCCccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhhccccccccccccccccceEEccCCcccCcCCc
Q 001497          808 IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP  887 (1066)
Q Consensus       808 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  887 (1066)
                      +++ +..+                                                      .|..||+|+|+++ .||-
T Consensus       205 p~E-l~~L------------------------------------------------------pLi~lDfScNkis-~iPv  228 (722)
T KOG0532|consen  205 PEE-LCSL------------------------------------------------------PLIRLDFSCNKIS-YLPV  228 (722)
T ss_pred             CHH-HhCC------------------------------------------------------ceeeeecccCcee-ecch
Confidence            332 2222                                                      3778899999998 7899


Q ss_pred             CCCCCCCCCEEECcCccCccccchhccCC---CCCCEEeCCCCc
Q 001497          888 QIGNLTRIQTLNLSHNNLTGTIPLTFSNL---RHIESLDLSYNK  928 (1066)
Q Consensus       888 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~N~  928 (1066)
                      .|..|+.|++|-|.+|.++ ..|..+.-.   .=-++|+..-.+
T Consensus       229 ~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  229 DFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            9999999999999999998 677665432   234566666654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.14  E-value=6.4e-11  Score=134.92  Aligned_cols=198  Identities=35%  Similarity=0.509  Sum_probs=118.4

Q ss_pred             EEEccCCcccCCCCccccCCCCCCEEEccCCcccccCCCCCCCCcccEEEcCCCccccccCcccccCC-CCccEEEccCc
Q 001497          676 HIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC-SSLVTLDLSYN  754 (1066)
Q Consensus       676 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~L~~n  754 (1066)
                      .+++..|.+...+ .....++.++.|++.+|.++..                        +. ..... ++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i------------------------~~-~~~~~~~nL~~L~l~~N  150 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDI------------------------PP-LIGLLKSNLKELDLSDN  150 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccccC------------------------cc-ccccchhhccccccccc
Confidence            4666666553222 2333445666677777666632                        22 22333 26666666666


Q ss_pred             ccccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCcccCCccccCCccccccCCCCCCCCCCccc
Q 001497          755 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTS  834 (1066)
Q Consensus       755 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  834 (1066)
                      .+. .+|..++.+++|+.|++++|+++ .+|...+..+.|+.|++++|+++...+.. .                     
T Consensus       151 ~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~---------------------  206 (394)
T COG4886         151 KIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEI-E---------------------  206 (394)
T ss_pred             chh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhh-h---------------------
Confidence            666 44455666677777777777766 45555556667777777777766433211 0                     


Q ss_pred             cccCCCCCchhhhhhhhhhhhccccccccccccccccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhcc
Q 001497          835 FSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS  914 (1066)
Q Consensus       835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  914 (1066)
                                                      .+..|.++++++|++. .++..+..+..+..+.+++|++. ..|..++
T Consensus       207 --------------------------------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~  252 (394)
T COG4886         207 --------------------------------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIG  252 (394)
T ss_pred             --------------------------------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhc
Confidence                                            0124666677777544 45556667777777777777766 3356666


Q ss_pred             CCCCCCEEeCCCCcCccccCccccCCCCCCEEEcccCcccccCCC
Q 001497          915 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE  959 (1066)
Q Consensus       915 ~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~ip~  959 (1066)
                      .+++++.|++++|+++ .++. +..+..++.|++++|.++...|.
T Consensus       253 ~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         253 NLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence            7777777777777776 3333 66777777777777777666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.08  E-value=1.4e-10  Score=132.22  Aligned_cols=36  Identities=33%  Similarity=0.501  Sum_probs=14.3

Q ss_pred             CCcEEEcccCcCCCCCCccccCCCCCcEEEccCCccc
Q 001497          649 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE  685 (1066)
Q Consensus       649 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  685 (1066)
                      +|+.|++++|.+. .+|..++.++.|+.|++++|++.
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~  176 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS  176 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh
Confidence            3444444444443 22333334444444444444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=5.1e-11  Score=124.40  Aligned_cols=217  Identities=22%  Similarity=0.252  Sum_probs=98.8

Q ss_pred             CCCCCcEEECCCCcccCCCCccccCCCCCCCeeeCCCCcCcccccc----cCCCCCcEEECCCCcccCccccccccCCCC
Q 001497           19 RLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS----KGLSKLKSLGLSGTGFKGTFDVREFDSFNN   94 (1066)
Q Consensus        19 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~----~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~   94 (1066)
                      ++++||...|.++........+....|+++|.|||++|-+......    ..+++|+.|+++.|.+........-..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            3555555555555443111012344555555556655555443222    445555555555555432211111123445


Q ss_pred             cCEEEcCCCcccccccccchhhhccCCCccEEecCCCCCCccchhhccCCCCCcEEEcCCCcCCCCCChhhhcCCCCccE
Q 001497           95 LEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEE  174 (1066)
Q Consensus        95 L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  174 (1066)
                      |+.|.|++|+++...+.   .-+..+++|..|++..|...........-+..|+.|||++|++.........+.++.|+.
T Consensus       199 lK~L~l~~CGls~k~V~---~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQ---WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hheEEeccCCCCHHHHH---HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence            55555555555432111   122344555555555553222222222234455555555555442221123344455555


Q ss_pred             EEcCCCccCchhhcccccccceeeEeecCCCccccccchhhhccCCCCCcEEeccCCcccccccccccccCCCCCcEEec
Q 001497          175 LDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTL  254 (1066)
Q Consensus       175 L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L  254 (1066)
                      |.++.+.+..+.....                     +.......+++|+.|++..|.+... +....+..+++|+.|.+
T Consensus       276 Lnls~tgi~si~~~d~---------------------~s~~kt~~f~kL~~L~i~~N~I~~w-~sl~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDV---------------------ESLDKTHTFPKLEYLNISENNIRDW-RSLNHLRTLENLKHLRI  333 (505)
T ss_pred             hhccccCcchhcCCCc---------------------cchhhhcccccceeeecccCccccc-cccchhhccchhhhhhc
Confidence            5555554443332211                     0011234567777777777776322 11235555667777776


Q ss_pred             CCCccc
Q 001497          255 DDSSLH  260 (1066)
Q Consensus       255 ~~~~~~  260 (1066)
                      ..+.+.
T Consensus       334 ~~n~ln  339 (505)
T KOG3207|consen  334 TLNYLN  339 (505)
T ss_pred             cccccc
Confidence            666654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.02  E-value=1e-10  Score=119.02  Aligned_cols=69  Identities=22%  Similarity=0.461  Sum_probs=32.5

Q ss_pred             hccCCCCCcEEeccCCcccc--cccccccccCCCCCcEEecCCCccchhhHHHHhhh---CCCCcEEeccCCcc
Q 001497          216 SMGSFPSLNTLHLESNNFTA--TLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSI---FPSLKNLSMSGCEV  284 (1066)
Q Consensus       216 ~l~~l~~L~~L~L~~~~~~~--~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~---l~~L~~L~l~~~~~  284 (1066)
                      .+...+.|+.+++..|.+..  .......+..+++|++|||.+|.++......++..   ++.|++|++.+|.+
T Consensus       180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence            34444555555555555432  11223445555666666666665554333332221   34455555555543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=1.1e-10  Score=121.91  Aligned_cols=115  Identities=24%  Similarity=0.349  Sum_probs=73.9

Q ss_pred             CCCCccEEEcCCCccCchhhcccccccceeeEeecCCCccccccchhhhccCCCCCcEEeccCCcccccccccccccCCC
Q 001497          168 SLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFT  247 (1066)
Q Consensus       168 ~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~  247 (1066)
                      ++.+|+++.|.++.+......+....+.+.+.|+|+.+-+.........+..+|+|+.|.++.|.+....... .-..++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~-~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN-TTLLLS  197 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-chhhhh
Confidence            4556666666666655444334455566666666666655555555556677788888888887765433211 112467


Q ss_pred             CCcEEecCCCccchhhHHHHhhhCCCCcEEeccCCc
Q 001497          248 NLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCE  283 (1066)
Q Consensus       248 ~L~~L~L~~~~~~~~~~~~l~~~l~~L~~L~l~~~~  283 (1066)
                      +|+.|.++.|.++.....++...+|+|+.|++..|.
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~  233 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE  233 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence            788888888888766666666668888888887775

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.00  E-value=3.5e-10  Score=108.74  Aligned_cols=119  Identities=30%  Similarity=0.415  Sum_probs=32.4

Q ss_pred             CcCcccccccCCCCCcEEECCCCcccCcccccccc-CCCCcCEEEcCCCcccccccccchhhhccCCCccEEecCCCCCC
Q 001497           56 NKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFD-SFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCN  134 (1066)
Q Consensus        56 ~~i~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~-~l~~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~  134 (1066)
                      +.|...+...+..++++|+|+++.+...   +.++ .+.+|++|+|++|.|..+      +.+..+++|++|++++|.++
T Consensus         7 ~~i~~~~~~~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~   77 (175)
T PF14580_consen    7 NMIEQIAQYNNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRIS   77 (175)
T ss_dssp             --------------------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---
T ss_pred             cccccccccccccccccccccccccccc---cchhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCC
Confidence            3444444445566677777777776521   2333 456777777777777665      34556677777777777766


Q ss_pred             ccchhhccCCCCCcEEEcCCCcCCCCCChhhhcCCCCccEEEcCCCccC
Q 001497          135 NSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID  183 (1066)
Q Consensus       135 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~i~  183 (1066)
                      .........+++|++|++++|++...-....++.+++|++|++.+|.+.
T Consensus        78 ~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   78 SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            5322212346677777777776654333345566666666666666554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.00  E-value=1.3e-10  Score=118.24  Aligned_cols=68  Identities=22%  Similarity=0.356  Sum_probs=35.4

Q ss_pred             CCCCCCCCCcEEECCCCccccccchhc-----cCCCCCcEEecccCcCcCC---CCCccccCCCCCCEEEcccCcc
Q 001497          346 QGLCPLAHLQELYIDNNDLRGSLPWCL-----ANTTSLRILDVSFNQLTGS---ISSSPLVHLTSIEELRLSNNHF  413 (1066)
Q Consensus       346 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~---i~~~~l~~l~~L~~L~L~~n~l  413 (1066)
                      .+++.+++|++|++++|.+......+|     ...++|+.|.+.+|.++..   .-.......+.|+.|+|++|.+
T Consensus       235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            345555566666666665554332222     1245666666666665421   0012234456677777777766

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.93  E-value=1.7e-10  Score=114.06  Aligned_cols=60  Identities=38%  Similarity=0.443  Sum_probs=33.9

Q ss_pred             CCCccEEEccCcccccccchhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCCcCc
Q 001497          743 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH  805 (1066)
Q Consensus       743 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  805 (1066)
                      +..|+++|||+|.|+ .+.+...-.|.++.|++++|.+...  +.+..+++|+.||||+|.++
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH
Confidence            345666666666665 4445555556666666666666522  12555566666666666554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.92  E-value=3.7e-10  Score=111.67  Aligned_cols=226  Identities=23%  Similarity=0.231  Sum_probs=113.7

Q ss_pred             CCCCCcEEECCCCc-------ccCCCCccccCCCCCCCeeeCCCCcCcccccc-cCCCCCcEEECCCCcccCcccccccc
Q 001497           19 RLSSLRSLYLSDNR-------LEGSIDVKELDSLRDLEELDIGGNKIDKFMVS-KGLSKLKSLGLSGTGFKGTFDVREFD   90 (1066)
Q Consensus        19 ~~~~L~~L~l~~~~-------~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~~   90 (1066)
                      =+.+|++|..++..       |.....+-.+.-+++|..+.++.|.-..+... ..-|.|+++.+.+..+....   .+-
T Consensus       180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~---~l~  256 (490)
T KOG1259|consen  180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVP---SLL  256 (490)
T ss_pred             hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccc---ccc
Confidence            35678888877642       22122233456678888888888876555444 44567788877766543210   000


Q ss_pred             CCCCcCEEEcCCCcccccccccchhhhccCCCccEEecCCCCCCccchhhccCCCCCcEEEcCCCcCCCCCChhhhcCCC
Q 001497           91 SFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLS  170 (1066)
Q Consensus        91 ~l~~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  170 (1066)
                      ....+  -|.....-+....+ ....+..-+.|+++|+++|.|+. +-.++.-.|.++.|++++|.+. .+.  .++.++
T Consensus       257 pe~~~--~D~~~~E~~t~~G~-~~~~~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~  329 (490)
T KOG1259|consen  257 PETIL--ADPSGSEPSTSNGS-ALVSADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQ--NLAELP  329 (490)
T ss_pred             chhhh--cCccCCCCCccCCc-eEEecchHhhhhhccccccchhh-hhhhhhhccceeEEecccccee-eeh--hhhhcc
Confidence            00111  11111100000000 00111122345555555555433 2333334455555555555554 222  355555


Q ss_pred             CccEEEcCCCccCchhhcccccccceeeEeecCCCccccccchhhhccCCCCCcEEeccCCcccccccccccccCCCCCc
Q 001497          171 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLE  250 (1066)
Q Consensus       171 ~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~  250 (1066)
                      +|++|||++|.++...  .+-..+-+.+.|.++.+.+.+..    .++++-+|..|++++|++..... ...+++++.|+
T Consensus       330 ~L~~LDLS~N~Ls~~~--Gwh~KLGNIKtL~La~N~iE~LS----GL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE  402 (490)
T KOG1259|consen  330 QLQLLDLSGNLLAECV--GWHLKLGNIKTLKLAQNKIETLS----GLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLE  402 (490)
T ss_pred             cceEeecccchhHhhh--hhHhhhcCEeeeehhhhhHhhhh----hhHhhhhheeccccccchhhHHH-hcccccccHHH
Confidence            5555555555544332  22233445555555555444332    34566667777777777654332 24677778888


Q ss_pred             EEecCCCccch
Q 001497          251 YLTLDDSSLHI  261 (1066)
Q Consensus       251 ~L~L~~~~~~~  261 (1066)
                      .+.+.+|++.+
T Consensus       403 ~l~L~~NPl~~  413 (490)
T KOG1259|consen  403 TLRLTGNPLAG  413 (490)
T ss_pred             HHhhcCCCccc
Confidence            88888877654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.91  E-value=1.6e-09  Score=104.13  Aligned_cols=130  Identities=27%  Similarity=0.343  Sum_probs=48.1

Q ss_pred             ccCCCCCCCeeeCCCCcCccccccc-CCCCCcEEECCCCcccCccccccccCCCCcCEEEcCCCcccccccccchhhh-c
Q 001497           41 ELDSLRDLEELDIGGNKIDKFMVSK-GLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERL-S  118 (1066)
Q Consensus        41 ~l~~l~~L~~L~L~~~~i~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~i~~~~~~~~l~~l-~  118 (1066)
                      .+.+..++|+|+|+++.|+.+.... .+.+|+.|++++|.+..   .+.+..+++|++|++++|.|+.+.     +.+ .
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~---l~~l~~L~~L~~L~L~~N~I~~i~-----~~l~~   85 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK---LEGLPGLPRLKTLDLSNNRISSIS-----EGLDK   85 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S-C-----HHHHH
T ss_pred             ccccccccccccccccccccccchhhhhcCCCEEECCCCCCcc---ccCccChhhhhhcccCCCCCCccc-----cchHH
Confidence            3445566788888888888776664 57888888888888762   335677888888888888887763     123 3


Q ss_pred             cCCCccEEecCCCCCCcc-chhhccCCCCCcEEEcCCCcCCCCCC--hhhhcCCCCccEEEcC
Q 001497          119 RLSKLKKLDLRGNLCNNS-ILSSVARLSSLTSLHLSHNILQGSID--AKEFDSLSNLEELDIN  178 (1066)
Q Consensus       119 ~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~l~~L~~L~L~  178 (1066)
                      .+++|++|++++|.|.+. ....++.+++|++|++.+|++...-.  ...+..+|+|+.||-.
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            578888888888887652 34567778888888888888763322  2245667888877654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.83  E-value=3.8e-10  Score=117.36  Aligned_cols=290  Identities=22%  Similarity=0.190  Sum_probs=169.9

Q ss_pred             CcCEEEcCCCcccccccccchhhhccCCCccEEecCCCC-CCccchhhcc-CCCCCcEEEcCCCcCCCCCChh-hhcCCC
Q 001497           94 NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNL-CNNSILSSVA-RLSSLTSLHLSHNILQGSIDAK-EFDSLS  170 (1066)
Q Consensus        94 ~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~-~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~-~l~~l~  170 (1066)
                      .|+.|.+.++.-.......  ....+++++++|++.++. +++.....++ .+++|++|++..|......... .-..++
T Consensus       139 ~lk~LSlrG~r~v~~sslr--t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLR--TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR  216 (483)
T ss_pred             ccccccccccccCCcchhh--HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence            6777777776533322111  123467777777777765 3333333444 3677888887775322122221 233567


Q ss_pred             CccEEEcCCC-ccCchhhcccccccceeeEeecCCCccccccchhhhccCCCCCcEEeccCCcccccccccccccCCCCC
Q 001497          171 NLEELDINDN-EIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNL  249 (1066)
Q Consensus       171 ~L~~L~L~~n-~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L  249 (1066)
                      +|++++++|+ ++++..+....+++..++.+.+.+|.....+.+...-+.++-+.++++..|...++...+..-..+..|
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence            8888888887 456655566677777777776666665555555555566666777777777666665555555667888


Q ss_pred             cEEecCCCc-cchhhHHHHhhhCCCCcEEeccCCcccccccC-CCCccccccccccchhhHhhhccchhhhhcCCCCcce
Q 001497          250 EYLTLDDSS-LHISLLQSIGSIFPSLKNLSMSGCEVNGVLSG-QGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLK  327 (1066)
Q Consensus       250 ~~L~L~~~~-~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~  327 (1066)
                      ++|+.+++. +.......++...++|+.+-++.|+.-+..-. ..-.+++.|+.+++..+....+.. +......++.|+
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t-L~sls~~C~~lr  375 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT-LASLSRNCPRLR  375 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh-HhhhccCCchhc
Confidence            888888765 45555566777688888888888864222111 112456778888777776655542 233345667777


Q ss_pred             eeeccCCcCCC-CCCcccCCCCCCCCCCcEEECCCCccc-cccchhccCCCCCcEEecccC
Q 001497          328 YLSLSGSTLGT-NSSRILDQGLCPLAHLQELYIDNNDLR-GSLPWCLANTTSLRILDVSFN  386 (1066)
Q Consensus       328 ~l~l~~~~~~~-~~~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n  386 (1066)
                      ++.++.|...+ ++...+...-+.+..|+.+.|++++.. ...-+.+..++.|+.+++..+
T Consensus       376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            77777664433 222333333445566666666666532 222233344444444444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.82  E-value=2.7e-09  Score=84.12  Aligned_cols=60  Identities=50%  Similarity=0.630  Sum_probs=43.6

Q ss_pred             ccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcC
Q 001497          870 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL  929 (1066)
Q Consensus       870 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  929 (1066)
                      .|+.|++++|+++...+..|..+++|++|++++|+++...|.+|.++++|+.|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            567777777777766666777777777777777777766667777777777777777764

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.76  E-value=4.4e-09  Score=82.88  Aligned_cols=61  Identities=39%  Similarity=0.572  Sum_probs=57.6

Q ss_pred             CCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEcccCcc
Q 001497          893 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL  953 (1066)
Q Consensus       893 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l  953 (1066)
                      ++|++|++++|+|+...+..|.++++|++||+++|+++...|.+|.+++.|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999999988778999999999999999999988889999999999999999986

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.73  E-value=1.3e-09  Score=113.39  Aligned_cols=163  Identities=13%  Similarity=0.107  Sum_probs=83.6

Q ss_pred             ccCCCCCcEEeccCCcccccccccccccCCCCCcEEecCCCc-cchhhHHHHhhhCCCCcEEeccCCcccccc-cCCCCc
Q 001497          217 MGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSS-LHISLLQSIGSIFPSLKNLSMSGCEVNGVL-SGQGFP  294 (1066)
Q Consensus       217 l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~-~~~~~~  294 (1066)
                      -..+..|++|+.+++...+..+.+.--.+.++|+.|.++.|+ ++...+..++..++.|+.+++.+|...... -...-.
T Consensus       290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~  369 (483)
T KOG4341|consen  290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR  369 (483)
T ss_pred             hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence            334445555555555444433333333444555555555554 344444445544566666666665432211 111234


Q ss_pred             cccccccccchhhHhhhccchh--hhhcCCCCcceeeeccCCcCCCCCCcccCCCCCCCCCCcEEECCCCcccc--ccch
Q 001497          295 HFKSLEHLDMRFARIALNTSFL--QIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRG--SLPW  370 (1066)
Q Consensus       295 ~l~~L~~L~l~~~~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~  370 (1066)
                      +++.|+.+.++.|....+....  ......+..+..+.+++++..++..   .+.+..+++|+.+++-++.-..  .+..
T Consensus       370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~---Le~l~~c~~Leri~l~~~q~vtk~~i~~  446 (483)
T KOG4341|consen  370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT---LEHLSICRNLERIELIDCQDVTKEAISR  446 (483)
T ss_pred             CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH---HHHHhhCcccceeeeechhhhhhhhhHH
Confidence            5666666666666555444111  1122345667778888877654332   2356678899999998885322  1222


Q ss_pred             hccCCCCCcEEe
Q 001497          371 CLANTTSLRILD  382 (1066)
Q Consensus       371 ~~~~l~~L~~L~  382 (1066)
                      .-.++++++...
T Consensus       447 ~~~~lp~i~v~a  458 (483)
T KOG4341|consen  447 FATHLPNIKVHA  458 (483)
T ss_pred             HHhhCccceehh
Confidence            234455555543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.70  E-value=2.2e-09  Score=122.15  Aligned_cols=225  Identities=29%  Similarity=0.311  Sum_probs=116.8

Q ss_pred             CCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCCCccccCCCCCCEEEccCCcccccCCCCCCCCcccE
Q 001497          644 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQ  723 (1066)
Q Consensus       644 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~  723 (1066)
                      +..+++|+.|++.+|++. .+...+..+++|++|++++|+++...+  +..++.|+.|++++|.++.             
T Consensus        91 l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~-------------  154 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISD-------------  154 (414)
T ss_pred             cccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchh-------------
Confidence            344455555555555554 222224445555555555555543322  3334445555555555542             


Q ss_pred             EEcCCCccccccCcccccCCCCccEEEccCcccccccc-hhhhCCCCCCEEeCcCCcccccCChhhhcCCCCCEEECcCC
Q 001497          724 VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN  802 (1066)
Q Consensus       724 L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N  802 (1066)
                                 +.  .+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+...  ..+..+..+..+++..|
T Consensus       155 -----------~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n  218 (414)
T KOG0531|consen  155 -----------IS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDN  218 (414)
T ss_pred             -----------cc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccc
Confidence                       11  23345666666666666664333 1 35556666666666666522  22333334444455566


Q ss_pred             cCcccCCccccCCccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhhcccccccccccccc--ccceEEccCCc
Q 001497          803 NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS--LLAGLDLSCNK  880 (1066)
Q Consensus       803 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~Ls~N~  880 (1066)
                      .++..-+...                                                       +.  .|+.+++++|.
T Consensus       219 ~i~~~~~l~~-------------------------------------------------------~~~~~L~~l~l~~n~  243 (414)
T KOG0531|consen  219 KISKLEGLNE-------------------------------------------------------LVMLHLRELYLSGNR  243 (414)
T ss_pred             cceeccCccc-------------------------------------------------------chhHHHHHHhcccCc
Confidence            5542211000                                                       01  25667777777


Q ss_pred             ccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccc---cCcc-ccCCCCCCEEEcccCccccc
Q 001497          881 LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK---IPRQ-LVDLNTLAIFIVAYNNLSGK  956 (1066)
Q Consensus       881 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---ip~~-l~~l~~L~~l~ls~N~l~g~  956 (1066)
                      +. .++..+..+..+..|++++|++...-.  +.....+..+.++.|.+...   .... ......+....+.+|.....
T Consensus       244 i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (414)
T KOG0531|consen  244 IS-RSPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI  320 (414)
T ss_pred             cc-cccccccccccccccchhhcccccccc--ccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence            76 344556667777777777777764332  34445666667777766521   1111 34556666667777766654


Q ss_pred             CC
Q 001497          957 IP  958 (1066)
Q Consensus       957 ip  958 (1066)
                      .+
T Consensus       321 ~~  322 (414)
T KOG0531|consen  321 SS  322 (414)
T ss_pred             cc
Confidence            44

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.62  E-value=2.7e-08  Score=120.56  Aligned_cols=132  Identities=26%  Similarity=0.262  Sum_probs=89.5

Q ss_pred             CCCCCCCeeeCCCCcCcccccccCCCCCcEEECCCCcc-cCccccccccCCCCcCEEEcCCCcc-cccccccchhhhccC
Q 001497           43 DSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGF-KGTFDVREFDSFNNLEVLDMSGNEI-DNLVVPQGLERLSRL  120 (1066)
Q Consensus        43 ~~l~~L~~L~L~~~~i~~~~~~~~l~~L~~L~L~~~~~-~~~~~~~~~~~l~~L~~L~Ls~~~i-~~~~~~~~l~~l~~l  120 (1066)
                      ......|...+-++.+...+....++.|++|-+.++.. ........|..++.|++|||++|.- ..+|     ..++.+
T Consensus       520 ~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP-----~~I~~L  594 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP-----SSIGEL  594 (889)
T ss_pred             cchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC-----hHHhhh
Confidence            34466777777777777777667777888888877752 2234444577788888888886532 2232     456677


Q ss_pred             CCccEEecCCCCCCccchhhccCCCCCcEEEcCCCcCCCCCChhhhcCCCCccEEEcCCCc
Q 001497          121 SKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNE  181 (1066)
Q Consensus       121 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~  181 (1066)
                      -+||+|+++++.+. .+|..++++..|.+|++..+.-...+ +.....+++|++|.+....
T Consensus       595 i~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  595 VHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccc
Confidence            88888888888766 46778888888888888876654333 3355557788888776543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.56  E-value=8.6e-09  Score=117.32  Aligned_cols=127  Identities=32%  Similarity=0.411  Sum_probs=60.5

Q ss_pred             CCCCcEEECCCCcccCCCCccccCCCCCCCeeeCCCCcCccccc-ccCCCCCcEEECCCCcccCccccccccCCCCcCEE
Q 001497           20 LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMV-SKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVL   98 (1066)
Q Consensus        20 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L   98 (1066)
                      +..++.+.+..|.+...  ...+..+++|++|++.+++|..+.. ...+++|++|++++|.+.   ....+..++.|+.|
T Consensus        71 l~~l~~l~l~~n~i~~~--~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~---~i~~l~~l~~L~~L  145 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKI--LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT---KLEGLSTLTLLKEL  145 (414)
T ss_pred             hHhHHhhccchhhhhhh--hcccccccceeeeeccccchhhcccchhhhhcchheeccccccc---cccchhhccchhhh
Confidence            34444444555544421  2234555555555555555555544 445555555555555543   12233444445555


Q ss_pred             EcCCCcccccccccchhhhccCCCccEEecCCCCCCccch-hhccCCCCCcEEEcCCCcCC
Q 001497           99 DMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSIL-SSVARLSSLTSLHLSHNILQ  158 (1066)
Q Consensus        99 ~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~  158 (1066)
                      ++++|.|..+      ..+..++.|+.+++++|.+..... . +..+.+++.+++.+|.+.
T Consensus       146 ~l~~N~i~~~------~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  146 NLSGNLISDI------SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             eeccCcchhc------cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            5555555444      233335555555555555444222 1 344455555555555443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.54  E-value=8.6e-08  Score=116.23  Aligned_cols=84  Identities=32%  Similarity=0.413  Sum_probs=39.7

Q ss_pred             ccCCCCCCeEeccCccccccCCCCCCCCCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCCCccccCCCCCC
Q 001497          620 IFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ  699 (1066)
Q Consensus       620 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  699 (1066)
                      |..++.|++|||++|.-.+.+|..++.+-+|++|++++..+. .+|..++++..|.+|++..+.-...+|.....+.+|+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence            334444444444444444444444554555555555555444 4455555555555555544443333344444455555


Q ss_pred             EEEcc
Q 001497          700 ILDIS  704 (1066)
Q Consensus       700 ~L~l~  704 (1066)
                      +|.+.
T Consensus       646 ~L~l~  650 (889)
T KOG4658|consen  646 VLRLP  650 (889)
T ss_pred             EEEee
Confidence            55443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=5.8e-09  Score=103.49  Aligned_cols=183  Identities=22%  Similarity=0.151  Sum_probs=84.0

Q ss_pred             ccEEecCCCCCCcc-chhhccCCCCCcEEEcCCCcCCCCCChhhhcCCCCccEEEcCCC-ccCchhhcccccccceeeEe
Q 001497          123 LKKLDLRGNLCNNS-ILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN-EIDNVEVSRGYRGLRKLKSL  200 (1066)
Q Consensus       123 L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n-~i~~~~~~~~~~~~~~L~~L  200 (1066)
                      |+++|++...++.. +-..++.|.+|+.|.+.++++...+.. .+++-.+|+.|+++.+ .++.....-++..|+.|..|
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            44555554444322 222344445555555555554433322 4444445555555443 33333444444445555555


Q ss_pred             ecCCCccccccchhhhccCCCCCcEEeccCCcccc-cccccccccCCCCCcEEecCCCc-cchhhHHHHhhhCCCCcEEe
Q 001497          201 DLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTA-TLTTTQELHNFTNLEYLTLDDSS-LHISLLQSIGSIFPSLKNLS  278 (1066)
Q Consensus       201 ~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~l~~~l~~L~~L~  278 (1066)
                      +|++|...........-.--++|+.|+++++.-.- ......-...+++|.+|||++|. ++......+.+ ++.|++|.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~~L~~lS  344 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-FNYLQHLS  344 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh-cchheeee
Confidence            55544333211111111112455566666554211 00111223446667777777655 34444455555 67777777


Q ss_pred             ccCCcccccccCCCCccccccccccchhh
Q 001497          279 MSGCEVNGVLSGQGFPHFKSLEHLDMRFA  307 (1066)
Q Consensus       279 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  307 (1066)
                      ++.|.....-....+...+.|..|++.++
T Consensus       345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            77775432211222444566666666554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=6.2e-09  Score=103.30  Aligned_cols=187  Identities=25%  Similarity=0.220  Sum_probs=87.0

Q ss_pred             CCcEEEcCCCcCCCCCChhhhcCCCCccEEEcCCCccCchhhcccccccceeeEeecCCCccccccchhhhccCCCCCcE
Q 001497          146 SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNT  225 (1066)
Q Consensus       146 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~  225 (1066)
                      .|++|||+...++..--...+..+.+|+.|.+.++++.+.... -...-+.|+.|+|+.+++....+..-.+.+++.|.+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            4566666655544221122344555566666666655544322 233344555556655554444433334555566666


Q ss_pred             EeccCCcccccccccccccCCCCCcEEecCCCc--cchhhHHHHhhhCCCCcEEeccCCcccccccCCCCcccccccccc
Q 001497          226 LHLESNNFTATLTTTQELHNFTNLEYLTLDDSS--LHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD  303 (1066)
Q Consensus       226 L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~--~~~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  303 (1066)
                      |++++|...........-.--++|+.|+++++.  +...-...+...+|+|.+|++++|......-...+.+++.|+++.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            666665544332111111112455555555543  222233334444566666666655433322222344555556555


Q ss_pred             chhhHhhhccchhhhhcCCCCcceeeeccCCc
Q 001497          304 MRFARIALNTSFLQIIGESMPSLKYLSLSGST  335 (1066)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~  335 (1066)
                      ++.|.......+.  ....+|+|.+|++.++-
T Consensus       345 lsRCY~i~p~~~~--~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  345 LSRCYDIIPETLL--ELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhhhcCCChHHee--eeccCcceEEEEecccc
Confidence            5555443222221  12345556666655543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=9.6e-08  Score=95.04  Aligned_cols=210  Identities=20%  Similarity=0.290  Sum_probs=114.9

Q ss_pred             CCCCcEEECCCCcccCCCCccccC-CCCCCCeeeCCCCcCcccccc----cCCCCCcEEECCCCcccCccccccccCCCC
Q 001497           20 LSSLRSLYLSDNRLEGSIDVKELD-SLRDLEELDIGGNKIDKFMVS----KGLSKLKSLGLSGTGFKGTFDVREFDSFNN   94 (1066)
Q Consensus        20 ~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~L~~~~i~~~~~~----~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~   94 (1066)
                      .+.+..|.+.++.|...-+...|+ .+++++.+||.+|.|++...+    .++|+|++|+++.|.+...+.... ....+
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~n  122 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKN  122 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccc
Confidence            334445666666665433334443 567888888888888776544    678888888888887753322221 35567


Q ss_pred             cCEEEcCCCcccccccccchhhhccCCCccEEecCCCCCCccc--hhhccC-CCCCcEEEcCCCcCCCCCChh-hhcCCC
Q 001497           95 LEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSI--LSSVAR-LSSLTSLHLSHNILQGSIDAK-EFDSLS  170 (1066)
Q Consensus        95 L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~~~~--~~~l~~-l~~L~~L~L~~n~l~~~~~~~-~l~~l~  170 (1066)
                      |++|-|.+.++.-....   ..+..++.+++|.++.|......  ...... .+.+++|....|....-.... .-.-.+
T Consensus       123 l~~lVLNgT~L~w~~~~---s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp  199 (418)
T KOG2982|consen  123 LRVLVLNGTGLSWTQST---SSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP  199 (418)
T ss_pred             eEEEEEcCCCCChhhhh---hhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence            88888877766544322   34556777777777776322110  011111 134555555444322100000 111236


Q ss_pred             CccEEEcCCCccCchhhcccccccceeeEeecCCCccccccchhhhccCCCCCcEEeccCCccc
Q 001497          171 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT  234 (1066)
Q Consensus       171 ~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  234 (1066)
                      ++..+-+..|.+........+...+.+-.|.|+.+++.+... ++.+..++.|..|.+..+.++
T Consensus       200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswas-vD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWAS-VDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHH-HHHHcCCchhheeeccCCccc
Confidence            667777777766655555555555555555555554443221 235666666666666666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=7.1e-08  Score=95.93  Aligned_cols=62  Identities=35%  Similarity=0.523  Sum_probs=27.6

Q ss_pred             CCCccEEecCCCCCCc--cchhhccCCCCCcEEEcCCCcCCCCCChhhh-cCCCCccEEEcCCCccC
Q 001497          120 LSKLKKLDLRGNLCNN--SILSSVARLSSLTSLHLSHNILQGSIDAKEF-DSLSNLEELDINDNEID  183 (1066)
Q Consensus       120 l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l-~~l~~L~~L~L~~n~i~  183 (1066)
                      ++.++++|+.+|.|++  .+..-+.++|.|++|+++.|++...|..  + ....+|++|-|.+..+.
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGTGLS  134 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCCCCC
Confidence            3445555555555443  2333344455555555555554433321  1 23344555544444433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.30  E-value=3.9e-08  Score=86.20  Aligned_cols=64  Identities=23%  Similarity=0.399  Sum_probs=38.3

Q ss_pred             ccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCcc
Q 001497          870 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ  936 (1066)
Q Consensus       870 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~  936 (1066)
                      .++.|+|++|+|+ .+|.++..++.|+.||++.|.+. ..|..|..|.++..||...|.+. +||..
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d  141 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD  141 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence            4455666666666 55666666666666666666666 45555555666666666666655 44443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.28  E-value=7.1e-07  Score=87.80  Aligned_cols=150  Identities=23%  Similarity=0.183  Sum_probs=86.7

Q ss_pred             CCCccEEEcCCCccCchhh---cccccccceeeEeecCCCccccc--cchh-hhccCCCCCcEEeccCCcccc--ccccc
Q 001497          169 LSNLEELDINDNEIDNVEV---SRGYRGLRKLKSLDLSGVGIRDG--NKLL-QSMGSFPSLNTLHLESNNFTA--TLTTT  240 (1066)
Q Consensus       169 l~~L~~L~L~~n~i~~~~~---~~~~~~~~~L~~L~L~~~~~~~~--~~~~-~~l~~l~~L~~L~L~~~~~~~--~~~~~  240 (1066)
                      -|.|++.....|++.....   ...+....+++.+.+..+.+..-  ...+ ..+..+.+|++|++..|.++-  .....
T Consensus       156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La  235 (388)
T COG5238         156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA  235 (388)
T ss_pred             CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence            3555555555554433221   12233334555555555555432  1111 145567788888888887642  22334


Q ss_pred             ccccCCCCCcEEecCCCccchhhHHHHh-----hhCCCCcEEeccCCcccccccCC------CCccccccccccchhhHh
Q 001497          241 QELHNFTNLEYLTLDDSSLHISLLQSIG-----SIFPSLKNLSMSGCEVNGVLSGQ------GFPHFKSLEHLDMRFARI  309 (1066)
Q Consensus       241 ~~l~~l~~L~~L~L~~~~~~~~~~~~l~-----~~l~~L~~L~l~~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~  309 (1066)
                      .++...+.|+.|.+.+|-++.....++.     ...|+|+.|...+|.+.+.+-..      .-..++-|..+.+.+|++
T Consensus       236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~  315 (388)
T COG5238         236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI  315 (388)
T ss_pred             HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence            5667778889999999888766554442     23688999999888765543221      123456667777777776


Q ss_pred             hhccchhhh
Q 001497          310 ALNTSFLQI  318 (1066)
Q Consensus       310 ~~~~~~~~~  318 (1066)
                      .....+...
T Consensus       316 ~E~~d~~d~  324 (388)
T COG5238         316 KELADFGDY  324 (388)
T ss_pred             hhHHHHHHH
Confidence            655444433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.20  E-value=7.9e-07  Score=105.11  Aligned_cols=83  Identities=29%  Similarity=0.400  Sum_probs=41.5

Q ss_pred             CCCCcEEECCCCcccCCCCccccCCCCCCCeeeCCCCcCcccccccCCCCCcEEECCCCcccCccccccccCCCCcCEEE
Q 001497           20 LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLD   99 (1066)
Q Consensus        20 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~   99 (1066)
                      ||+|+.|.+.+-.+..........++++|+.||+|++.++.+...+++++|+.|.+.+-.+....+...+-.+++|++||
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD  226 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD  226 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeee
Confidence            45555555555544322112233455555555555555555544455555555555555554333444444455555555


Q ss_pred             cCC
Q 001497          100 MSG  102 (1066)
Q Consensus       100 Ls~  102 (1066)
                      +|.
T Consensus       227 IS~  229 (699)
T KOG3665|consen  227 ISR  229 (699)
T ss_pred             ccc
Confidence            554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.16  E-value=7.5e-08  Score=107.03  Aligned_cols=201  Identities=23%  Similarity=0.271  Sum_probs=115.2

Q ss_pred             CCCcEEECCCCcccCCCCccccCCCCCCCeeeCCCCcCcccccccCC-CCCcEEECCCCccc-Ccc---cccccc---CC
Q 001497           21 SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGL-SKLKSLGLSGTGFK-GTF---DVREFD---SF   92 (1066)
Q Consensus        21 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~l-~~L~~L~L~~~~~~-~~~---~~~~~~---~l   92 (1066)
                      +.++.|.+-...-.+-..|-.|..++.||+|.+++|.++..-....+ ..|++|...+.--. ...   -...++   ..
T Consensus        84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~W  163 (1096)
T KOG1859|consen   84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVW  163 (1096)
T ss_pred             hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhh
Confidence            44555555444333222244567888889999998888764333222 24444443322100 000   000011   12


Q ss_pred             CCcCEEEcCCCcccccccccchhhhccCCCccEEecCCCCCCccchhhccCCCCCcEEEcCCCcCCCCCChhhhcCCCCc
Q 001497           93 NNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNL  172 (1066)
Q Consensus        93 ~~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L  172 (1066)
                      ..|.+.+.++|.+....     ..+.-++.|+.|||++|++..  ...+..+++|++|||++|.+. .++.-....+. |
T Consensus       164 n~L~~a~fsyN~L~~mD-----~SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L  234 (1096)
T KOG1859|consen  164 NKLATASFSYNRLVLMD-----ESLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-L  234 (1096)
T ss_pred             hhHhhhhcchhhHHhHH-----HHHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhc-cccccchhhhh-h
Confidence            25666667777665442     456667777888888887766  336777778888888887776 44432333333 7


Q ss_pred             cEEEcCCCccCchhhcccccccceeeEeecCCCccccccchhhhccCCCCCcEEeccCCccc
Q 001497          173 EELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT  234 (1066)
Q Consensus       173 ~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~  234 (1066)
                      +.|.+++|.++...   ....++.|+.||+++|-+...... ..+..+..|++|.|.+|.+.
T Consensus       235 ~~L~lrnN~l~tL~---gie~LksL~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  235 QLLNLRNNALTTLR---GIENLKSLYGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eeeeecccHHHhhh---hHHhhhhhhccchhHhhhhcchhh-hHHHHHHHHHHHhhcCCccc
Confidence            77777777665543   234566777777777765554432 23455667777888877764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.15  E-value=4.4e-08  Score=108.78  Aligned_cols=180  Identities=28%  Similarity=0.279  Sum_probs=94.0

Q ss_pred             HhhhcCCCCCcEEECCCCcccCCCCccccCCCC-CCCeeeCCCCcCcc-----------cccccCCCCCcEEECCCCccc
Q 001497           14 LSSLARLSSLRSLYLSDNRLEGSIDVKELDSLR-DLEELDIGGNKIDK-----------FMVSKGLSKLKSLGLSGTGFK   81 (1066)
Q Consensus        14 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~L~~~~i~~-----------~~~~~~l~~L~~L~L~~~~~~   81 (1066)
                      |-++..|+.||+|.+.+|++...   ..+..++ .|++|.-++. ...           +....---.|.+-+.+.|.+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~---~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA---KGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSPVWNKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh---hhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence            45677899999999999998742   2333332 3444433221 111           000011123444455555442


Q ss_pred             CccccccccCCCCcCEEEcCCCcccccccccchhhhccCCCccEEecCCCCCCccchhhccCCCCCcEEEcCCCcCCCCC
Q 001497           82 GTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSI  161 (1066)
Q Consensus        82 ~~~~~~~~~~l~~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  161 (1066)
                       . -.+.+.-++.|++|+|+.|++...      ..+..|++|++|||+.|.+....--....+ +|+.|.+++|.++ . 
T Consensus       178 -~-mD~SLqll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~-t-  246 (1096)
T KOG1859|consen  178 -L-MDESLQLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALT-T-  246 (1096)
T ss_pred             -h-HHHHHHHHHHhhhhccchhhhhhh------HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHH-h-
Confidence             1 122344455666666666666554      355566666666666665544221122222 2666666666655 1 


Q ss_pred             ChhhhcCCCCccEEEcCCCccCchhhcccccccceeeEeecCCCcccc
Q 001497          162 DAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD  209 (1066)
Q Consensus       162 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~~~~~~  209 (1066)
                       ...+.++.+|+.||+++|-+.+..-.+.+..+..|+.|.|.+|+...
T Consensus       247 -L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  247 -LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             -hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence             12455666666666666655554444444455556666666665543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.12  E-value=1.9e-06  Score=84.89  Aligned_cols=196  Identities=18%  Similarity=0.296  Sum_probs=100.2

Q ss_pred             cCCCCcCEEEcCCCcccccccccchhhhccCCCccEEecCCCCCC---cc-------chhhccCCCCCcEEEcCCCcCCC
Q 001497           90 DSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCN---NS-------ILSSVARLSSLTSLHLSHNILQG  159 (1066)
Q Consensus        90 ~~l~~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~---~~-------~~~~l~~l~~L~~L~L~~n~l~~  159 (1066)
                      ..+..+..++||+|.|..-.....-..+.+-.+|+..+++.-...   +.       +.+++.+||+|++.+||+|.+..
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            335566666666666654322111123344556666666654211   11       23455566777777777776654


Q ss_pred             CCCh---hhhcCCCCccEEEcCCCccCchhhccc------------ccccceeeEeecCCCccccccchhh--hccCCCC
Q 001497          160 SIDA---KEFDSLSNLEELDINDNEIDNVEVSRG------------YRGLRKLKSLDLSGVGIRDGNKLLQ--SMGSFPS  222 (1066)
Q Consensus       160 ~~~~---~~l~~l~~L~~L~L~~n~i~~~~~~~~------------~~~~~~L~~L~L~~~~~~~~~~~~~--~l~~l~~  222 (1066)
                      ..++   +.+++-+.|++|.+.+|.+.......+            ....+.|+......++..+.+....  .+....+
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~  186 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN  186 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence            4432   234555667777777665433221111            1233456666665555554443222  3444456


Q ss_pred             CcEEeccCCccccccc---ccccccCCCCCcEEecCCCccchhhHHHHhhh---CCCCcEEeccCCccc
Q 001497          223 LNTLHLESNNFTATLT---TTQELHNFTNLEYLTLDDSSLHISLLQSIGSI---FPSLKNLSMSGCEVN  285 (1066)
Q Consensus       223 L~~L~L~~~~~~~~~~---~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~---l~~L~~L~l~~~~~~  285 (1066)
                      |+++.+..|.+...-.   ....+..+++|++||+.+|.++-.....++..   .+.|++|.+.+|-++
T Consensus       187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            7777777766543211   01233445677777777777654433333221   344566666666443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.08  E-value=1.9e-06  Score=102.05  Aligned_cols=186  Identities=26%  Similarity=0.293  Sum_probs=121.2

Q ss_pred             CcCcchHhhhcCCCCCcEEECCCCcccCCC-------Cc-----ccc--CCCCCCCeeeCCCCcCccccc--c--cCCCC
Q 001497            8 AFNNNVLSSLARLSSLRSLYLSDNRLEGSI-------DV-----KEL--DSLRDLEELDIGGNKIDKFMV--S--KGLSK   69 (1066)
Q Consensus         8 ~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~-------~~-----~~l--~~l~~L~~L~L~~~~i~~~~~--~--~~l~~   69 (1066)
                      .+.....+.+.+.. |+.|.+.+.......       +.     ..+  ..-.+||+|+++|...-.-.+  .  ..+|.
T Consensus        71 ~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPs  149 (699)
T KOG3665|consen   71 TLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPS  149 (699)
T ss_pred             ecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcc
Confidence            33343444444444 777777764432211       10     011  123578999998865322222  1  56899


Q ss_pred             CcEEECCCCcccCccccccccCCCCcCEEEcCCCcccccccccchhhhccCCCccEEecCCCCCCc-cchhhccCCCCCc
Q 001497           70 LKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNN-SILSSVARLSSLT  148 (1066)
Q Consensus        70 L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~  148 (1066)
                      |++|.+.+..+....-.....++++|..||+|+++++.+      ..++++++|+.|.+.+-.+.. .....+.++++|+
T Consensus       150 L~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl------~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  150 LRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL------SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             cceEEecCceecchhHHHHhhccCccceeecCCCCccCc------HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            999999998876444445667899999999999988776      467788889988888777654 4456788899999


Q ss_pred             EEEcCCCcCCCCC--C---hhhhcCCCCccEEEcCCCccCchhhcccccccceeeEe
Q 001497          149 SLHLSHNILQGSI--D---AKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSL  200 (1066)
Q Consensus       149 ~L~L~~n~l~~~~--~---~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L  200 (1066)
                      .||+|........  .   .+.-..+|+|+.||.+++.+.+..........++|+.+
T Consensus       224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i  280 (699)
T KOG3665|consen  224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI  280 (699)
T ss_pred             eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence            9999987644221  0   11223478888888888887776666555555555553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.85  E-value=1.4e-05  Score=57.12  Aligned_cols=36  Identities=42%  Similarity=0.699  Sum_probs=20.5

Q ss_pred             CCCEEECcCccCccccchhccCCCCCCEEeCCCCcCc
Q 001497          894 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS  930 (1066)
Q Consensus       894 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  930 (1066)
                      +|++|++++|+|+ .+|..++++++|+.||+++|+|+
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4566666666666 44445666666666666666655

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.83  E-value=8e-07  Score=78.20  Aligned_cols=105  Identities=26%  Similarity=0.255  Sum_probs=49.2

Q ss_pred             ccEEEccCCcccccCChhhhh--cCCCCcEEEccCCcccccCCccc-cCcccCCEEEccCccCccccChhhhhcCCCCCE
Q 001497          528 LRFLDVSNNNFQGHIPVEIGD--ILPSLVYFNISMNALDGSIPSSF-GNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF  604 (1066)
Q Consensus       528 L~~L~ls~n~l~~~ip~~~~~--~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~  604 (1066)
                      +..+++++|++- .+++....  ....|+..++++|.+. .+|..| ...+.++.+++++|.++ .+|..+ ..++.|+.
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~-Aam~aLr~  104 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEEL-AAMPALRS  104 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHH-hhhHHhhh
Confidence            445566666553 44443322  1223444555555555 223222 22335555555555555 555553 34555555


Q ss_pred             EEccCccccccccccccCCCCCCeEeccCcccc
Q 001497          605 LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFV  637 (1066)
Q Consensus       605 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  637 (1066)
                      |+++.|.+. ..|+.+..+.++-+|+..+|...
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            555555554 23333334444444444444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.75  E-value=7.5e-05  Score=81.13  Aligned_cols=57  Identities=16%  Similarity=0.321  Sum_probs=33.4

Q ss_pred             CCCCEEECcCccCccccchhccCCCCCCEEeCCCCc-----C-ccccCccccCCCCCCEEEcccCcc
Q 001497          893 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK-----L-SGKIPRQLVDLNTLAIFIVAYNNL  953 (1066)
Q Consensus       893 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-----l-~~~ip~~l~~l~~L~~l~ls~N~l  953 (1066)
                      ++|++|++++|... ..|..+.  .+|+.|++++|.     + .+.+|+.+ .+....++.++.+.+
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f  218 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVF  218 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCHHHh
Confidence            46788888877765 3444433  577788877763     1 23556555 555554455555444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.71  E-value=2.5e-05  Score=55.94  Aligned_cols=37  Identities=43%  Similarity=0.742  Sum_probs=32.4

Q ss_pred             ccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCcc
Q 001497          870 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG  907 (1066)
Q Consensus       870 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  907 (1066)
                      .|++|++++|+|+ .+|+.++++++|+.|++++|+|+.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            6899999999999 677789999999999999999994

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.55  E-value=0.00012  Score=69.70  Aligned_cols=85  Identities=25%  Similarity=0.345  Sum_probs=44.5

Q ss_pred             CcCEEEcCCCcccccccccchhhhccCCCccEEecCCCCCCccchhhccCCCCCcEEEcCCCcCCCCCChhhhcCCCCcc
Q 001497           94 NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLE  173 (1066)
Q Consensus        94 ~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~  173 (1066)
                      ....+||++|++...      ..|..++.|.+|.++.|.|+..-|.--.-+++|+.|.+.+|.+..--+...+..+|+|+
T Consensus        43 ~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE  116 (233)
T ss_pred             ccceecccccchhhc------ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence            455566666655443      34455556666666666655543333333455666666665554322333455555555


Q ss_pred             EEEcCCCccCc
Q 001497          174 ELDINDNEIDN  184 (1066)
Q Consensus       174 ~L~L~~n~i~~  184 (1066)
                      +|.+-+|.++.
T Consensus       117 ~Ltll~Npv~~  127 (233)
T KOG1644|consen  117 YLTLLGNPVEH  127 (233)
T ss_pred             eeeecCCchhc
Confidence            55555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.43  E-value=0.00035  Score=65.18  Aligned_cols=106  Identities=23%  Similarity=0.247  Sum_probs=39.6

Q ss_pred             hhhhcCCCCcEEEccCCcccccCCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEccCccccccccccccCCC
Q 001497          545 EIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR  624 (1066)
Q Consensus       545 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  624 (1066)
                      ..+...++|+.+.+.. .+..+...+|.++++|+.+.+.++ +. .++...|.++++++.+.+.. .+.......|..++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccc
Confidence            3333344555555543 344344445555555555555543 43 45555555554555555543 33323333444445


Q ss_pred             CCCeEeccCccccccCCCCCCCCCCCcEEEcc
Q 001497          625 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN  656 (1066)
Q Consensus       625 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~  656 (1066)
                      +|+.+++..+ +.......|.++ .|+.+.+.
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            5555554433 322333344443 44444444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.40  E-value=0.00025  Score=67.56  Aligned_cols=129  Identities=25%  Similarity=0.310  Sum_probs=95.8

Q ss_pred             CcEEECCCCcccCCCCccccC-CCCCCCeeeCCCCcCcccccccCCCCCcEEECCCCcccCccccccccCCCCcCEEEcC
Q 001497           23 LRSLYLSDNRLEGSIDVKELD-SLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMS  101 (1066)
Q Consensus        23 L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~L~~~~i~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~Ls  101 (1066)
                      =+.+++.+..+...   +.++ -+.....+||+.|.+..++...+++.|.+|.+.+|.+. .+++..-..+++|+.|.|.
T Consensus        21 e~e~~LR~lkip~i---enlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   21 ERELDLRGLKIPVI---ENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             ccccccccccccch---hhccccccccceecccccchhhcccCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence            35567777665421   1233 34567888999998888777788999999999999886 5555555667889999999


Q ss_pred             CCcccccccccchhhhccCCCccEEecCCCCCCcc---chhhccCCCCCcEEEcCCCcCC
Q 001497          102 GNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNS---ILSSVARLSSLTSLHLSHNILQ  158 (1066)
Q Consensus       102 ~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~~~---~~~~l~~l~~L~~L~L~~n~l~  158 (1066)
                      +|.|..+.   .+..+..|++|++|.+-+|.+...   -.-.+..+|+|++||..+..-.
T Consensus        97 nNsi~~l~---dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen   97 NNSIQELG---DLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             Ccchhhhh---hcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence            99988774   346778899999999999886542   1235678899999999887544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.39  E-value=0.00065  Score=74.02  Aligned_cols=15  Identities=13%  Similarity=0.184  Sum_probs=8.3

Q ss_pred             CCCCcEEEccCCccc
Q 001497          501 NTKLEFLYLVNDSLA  515 (1066)
Q Consensus       501 ~~~L~~L~l~~n~l~  515 (1066)
                      +.++..|++++|.++
T Consensus        51 ~~~l~~L~Is~c~L~   65 (426)
T PRK15386         51 ARASGRLYIKDCDIE   65 (426)
T ss_pred             hcCCCEEEeCCCCCc
Confidence            455556666655444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.38  E-value=1e-05  Score=80.13  Aligned_cols=83  Identities=27%  Similarity=0.396  Sum_probs=40.0

Q ss_pred             CCCCCeeeCCCCcCcccccccCCCCCcEEECCCCcccCccccccccCCCCcCEEEcCCCcccccccccchhhhccCCCcc
Q 001497           45 LRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLK  124 (1066)
Q Consensus        45 l~~L~~L~L~~~~i~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~  124 (1066)
                      +.+.+.|+..+|.++++....+|+.|++|.|+-|.++   ....+..|++|++|+|..|.|..+   ..++-+.++++|+
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIs---sL~pl~rCtrLkElYLRkN~I~sl---dEL~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKIS---SLAPLQRCTRLKELYLRKNCIESL---DELEYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccc---cchhHHHHHHHHHHHHHhcccccH---HHHHHHhcCchhh
Confidence            4455566666666665544455555555555555443   123344455555555555544433   1223344444444


Q ss_pred             EEecCCCCC
Q 001497          125 KLDLRGNLC  133 (1066)
Q Consensus       125 ~L~L~~n~~  133 (1066)
                      .|.|..|.+
T Consensus        92 ~LWL~ENPC  100 (388)
T KOG2123|consen   92 TLWLDENPC  100 (388)
T ss_pred             hHhhccCCc
Confidence            444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.33  E-value=0.0005  Score=64.12  Aligned_cols=125  Identities=18%  Similarity=0.241  Sum_probs=65.5

Q ss_pred             CCccccCcccCCEEEccCccCccccChhhhhcCCCCCEEEccCccccccccccccCCCCCCeEeccCccccccCCCCCCC
Q 001497          567 IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSK  646 (1066)
Q Consensus       567 ~~~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~  646 (1066)
                      ...+|.++++|+.+.+.. .+. .++...|.++++|+.+.+..+ +.......|..+++++.+.+.+ .+.......|..
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             CHHHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence            345677888888888874 565 777777778878888888775 6656666777777788888865 444344556777


Q ss_pred             CCCCcEEEcccCcCCCCCCccccCCCCCcEEEccCCcccCCCCccccCCCCC
Q 001497          647 CSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL  698 (1066)
Q Consensus       647 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  698 (1066)
                      +++|+.+++..+ +.......|.++ .++.+.+.. .+.......|.++++|
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            788888887654 443445566666 777777765 4444555666666655

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.05  E-value=0.00012  Score=86.52  Aligned_cols=115  Identities=27%  Similarity=0.322  Sum_probs=48.0

Q ss_pred             CCCccEEEcCCC-ccCchhhcccccccceeeEeecCCC-ccccccc--hhhhccCCCCCcEEeccCCccccccccccccc
Q 001497          169 LSNLEELDINDN-EIDNVEVSRGYRGLRKLKSLDLSGV-GIRDGNK--LLQSMGSFPSLNTLHLESNNFTATLTTTQELH  244 (1066)
Q Consensus       169 l~~L~~L~L~~n-~i~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~--~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~  244 (1066)
                      .+.|+.+.+..+ .+.+.........++.|+.|+++++ .......  .......+++|+.|+++.+...+.........
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            455555555544 2332222333444555555555442 1111111  11123334555555555554322222111122


Q ss_pred             CCCCCcEEecCCCc-cchhhHHHHhhhCCCCcEEeccCCc
Q 001497          245 NFTNLEYLTLDDSS-LHISLLQSIGSIFPSLKNLSMSGCE  283 (1066)
Q Consensus       245 ~l~~L~~L~L~~~~-~~~~~~~~l~~~l~~L~~L~l~~~~  283 (1066)
                      .+++|++|.+.+|. ++......+...++.|++|+++.|.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            24455555555444 4444444444445555555555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.99  E-value=2.8e-05  Score=77.14  Aligned_cols=105  Identities=23%  Similarity=0.224  Sum_probs=83.8

Q ss_pred             CCCCcEEECCCCcccCCCCccccCCCCCCCeeeCCCCcCcccccccCCCCCcEEECCCCcccCccccccccCCCCcCEEE
Q 001497           20 LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLD   99 (1066)
Q Consensus        20 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~   99 (1066)
                      +...+.|++.||++.   +.....+++.|++|.||-|+|+.+.....|++|++|.|..|.|.......-+.++++|+.|-
T Consensus        18 l~~vkKLNcwg~~L~---DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD---DISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCcc---HHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            567888999999887   34567799999999999999999999999999999999999998666677788999999999


Q ss_pred             cCCCcccccccccc-hhhhccCCCccEEe
Q 001497          100 MSGNEIDNLVVPQG-LERLSRLSKLKKLD  127 (1066)
Q Consensus       100 Ls~~~i~~~~~~~~-l~~l~~l~~L~~L~  127 (1066)
                      |..|.-.+...+.. -..+.-+++|++||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            99887655443311 13345566666665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.99  E-value=0.00016  Score=85.38  Aligned_cols=244  Identities=25%  Similarity=0.231  Sum_probs=130.8

Q ss_pred             cCCCCcCEEEcCCCc-ccccccccchhhhccCCCccEEecCCC-CC-Cc---cchhhccCCCCCcEEEcCCCcCCCCCCh
Q 001497           90 DSFNNLEVLDMSGNE-IDNLVVPQGLERLSRLSKLKKLDLRGN-LC-NN---SILSSVARLSSLTSLHLSHNILQGSIDA  163 (1066)
Q Consensus        90 ~~l~~L~~L~Ls~~~-i~~~~~~~~l~~l~~l~~L~~L~L~~n-~~-~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~~  163 (1066)
                      ..++.|+.|.+.++. +....   .......+++|+.|+++++ .. ..   ........+++|+.|+++++....+...
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l  261 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL  261 (482)
T ss_pred             hhCchhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence            446777777777663 22211   1133456777888887762 11 11   1122334457778888887773223333


Q ss_pred             hhhcC-CCCccEEEcCCCc-cCchhhcccccccceeeEeecCCCccccccchhhhccCCCCCcEEeccCCcccccccccc
Q 001497          164 KEFDS-LSNLEELDINDNE-IDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQ  241 (1066)
Q Consensus       164 ~~l~~-l~~L~~L~L~~n~-i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~  241 (1066)
                      ..+.. +++|++|.+..+. +++.....+...++.|++|+++.+......++......+++++.|.+.....        
T Consensus       262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~--------  333 (482)
T KOG1947|consen  262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG--------  333 (482)
T ss_pred             HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC--------
Confidence            34433 6788888877776 6777777777777888888888777665555555555577777766543321        


Q ss_pred             cccCCCCCcEEecCCCccc--hhhHHHHhhhCCCCcEEeccCCcccccccCCCCcccccc-ccccchhhHhhhccchhhh
Q 001497          242 ELHNFTNLEYLTLDDSSLH--ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSL-EHLDMRFARIALNTSFLQI  318 (1066)
Q Consensus       242 ~l~~l~~L~~L~L~~~~~~--~~~~~~l~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~  318 (1066)
                          +..++.+.+..+.-.  ..........+++++.+.+..+......-......++.+ +.+....            
T Consensus       334 ----c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~------------  397 (482)
T KOG1947|consen  334 ----CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRL------------  397 (482)
T ss_pred             ----CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHh------------
Confidence                233333443332221  123333334477777777777763222112334455555 2222111            


Q ss_pred             hcCCCCcceeeeccCCcCCCCCCcccCCCCCCCCCCcEEECCCCcc
Q 001497          319 IGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL  364 (1066)
Q Consensus       319 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l  364 (1066)
                        .....++.+.+..+...+........  ..+..++.+++.++..
T Consensus       398 --~~~~~l~~L~l~~~~~~t~~~l~~~~--~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  398 --CRSDSLRVLNLSDCRLVTDKGLRCLA--DSCSNLKDLDLSGCRV  439 (482)
T ss_pred             --ccCCccceEecccCccccccchHHHh--hhhhccccCCccCccc
Confidence              12222677777776654432111100  0155677777777754

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.79  E-value=0.00067  Score=67.83  Aligned_cols=88  Identities=27%  Similarity=0.420  Sum_probs=51.7

Q ss_pred             cCCCCcCEEEcCCCcccccccccchhhhccCCCccEEecCCC--CCCccchhhccCCCCCcEEEcCCCcCCCCCChhhhc
Q 001497           90 DSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN--LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFD  167 (1066)
Q Consensus        90 ~~l~~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n--~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~  167 (1066)
                      ..+..|+.|.+.+..++.+      ..+-.+++|++|.++.|  .+...+......+++|++|++++|++...-....+.
T Consensus        40 d~~~~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~  113 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK  113 (260)
T ss_pred             ccccchhhhhhhccceeec------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence            3445666666666655554      34556677777777777  444444444455577777777777766322222445


Q ss_pred             CCCCccEEEcCCCccC
Q 001497          168 SLSNLEELDINDNEID  183 (1066)
Q Consensus       168 ~l~~L~~L~L~~n~i~  183 (1066)
                      .+.+|..|++..|..+
T Consensus       114 ~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhcchhhhhcccCCcc
Confidence            5566666666666544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.78  E-value=0.00072  Score=67.60  Aligned_cols=112  Identities=29%  Similarity=0.262  Sum_probs=78.7

Q ss_pred             cCCCCCCCeeeCCCCcCcccccccCCCCCcEEECCCCcccCcccccc-ccCCCCcCEEEcCCCcccccccccchhhhccC
Q 001497           42 LDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVRE-FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRL  120 (1066)
Q Consensus        42 l~~l~~L~~L~L~~~~i~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~~~l~~L~~L~Ls~~~i~~~~~~~~l~~l~~l  120 (1066)
                      ...+..|+.|++.+..++.+.....+++|+.|.++.|.......... ...+++|++|++++|+|..+   ..++.+..+
T Consensus        39 ~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l---stl~pl~~l  115 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL---STLRPLKEL  115 (260)
T ss_pred             cccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc---cccchhhhh
Confidence            45677788888888877776666788888999998885433333332 24459999999999988764   334667788


Q ss_pred             CCccEEecCCCCCCcc---chhhccCCCCCcEEEcCCCc
Q 001497          121 SKLKKLDLRGNLCNNS---ILSSVARLSSLTSLHLSHNI  156 (1066)
Q Consensus       121 ~~L~~L~L~~n~~~~~---~~~~l~~l~~L~~L~L~~n~  156 (1066)
                      .+|..|++..|.....   --..+.-+++|++||-....
T Consensus       116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             cchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            8889999988875542   22345667888888776654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.60  E-value=0.0052  Score=36.36  Aligned_cols=12  Identities=58%  Similarity=0.769  Sum_probs=5.1

Q ss_pred             CCEEECcCccCc
Q 001497          895 IQTLNLSHNNLT  906 (1066)
Q Consensus       895 L~~L~Ls~N~l~  906 (1066)
                      |++|||++|+|+
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            334444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.39  E-value=0.0051  Score=36.40  Aligned_cols=21  Identities=43%  Similarity=0.661  Sum_probs=14.4

Q ss_pred             CCCEEeCCCCcCccccCccccC
Q 001497          918 HIESLDLSYNKLSGKIPRQLVD  939 (1066)
Q Consensus       918 ~L~~L~Ls~N~l~~~ip~~l~~  939 (1066)
                      +|+.|||++|+|+ .+|.+|.+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4677777777777 67766554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.68  E-value=0.0026  Score=72.52  Aligned_cols=88  Identities=24%  Similarity=0.255  Sum_probs=42.8

Q ss_pred             cCEEEcCCCcccccccccchhhhccCCCccEEecCCCCCCccchhhccC----C-CCCcEEEcCCCcCCCCCC---hhhh
Q 001497           95 LEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVAR----L-SSLTSLHLSHNILQGSID---AKEF  166 (1066)
Q Consensus        95 L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~~~~~~~~~l~~----l-~~L~~L~L~~n~l~~~~~---~~~l  166 (1066)
                      +.+|.|.+|.+.......-...+.....|+.|++++|.+.+.-...+.+    . ..+++|++..|.++..-.   .+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            5666666666655433333344555666666666666665432222222    1 344555555555542211   1233


Q ss_pred             cCCCCccEEEcCCCcc
Q 001497          167 DSLSNLEELDINDNEI  182 (1066)
Q Consensus       167 ~~l~~L~~L~L~~n~i  182 (1066)
                      .....+++++++.|.+
T Consensus       169 ~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGL  184 (478)
T ss_pred             hcccchhHHHHHhccc
Confidence            3344555555555544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.50  E-value=0.0032  Score=71.71  Aligned_cols=40  Identities=28%  Similarity=0.413  Sum_probs=18.8

Q ss_pred             CcEEEcCCCcCCCCCC---hhhhcCCCCccEEEcCCCccCchh
Q 001497          147 LTSLHLSHNILQGSID---AKEFDSLSNLEELDINDNEIDNVE  186 (1066)
Q Consensus       147 L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~L~~n~i~~~~  186 (1066)
                      +..|.|.+|.+.....   ...+...+.|+.|++++|.+.+..
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g  131 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEG  131 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHh
Confidence            4445555554442211   123344555666666666555443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.03  E-value=0.14  Score=28.01  Aligned_cols=11  Identities=55%  Similarity=0.863  Sum_probs=3.3

Q ss_pred             CCEEECcCccC
Q 001497          895 IQTLNLSHNNL  905 (1066)
Q Consensus       895 L~~L~Ls~N~l  905 (1066)
                      |++|+|++|+|
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            34444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.66  E-value=0.011  Score=57.84  Aligned_cols=82  Identities=23%  Similarity=0.223  Sum_probs=70.4

Q ss_pred             ccceEEccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEcc
Q 001497          870 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  949 (1066)
Q Consensus       870 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls  949 (1066)
                      ..+.||++.|++. ..-..|..++.|..||+|.|++. ..|..++++..+..+++.+|..+ ..|.++...+.++++++-
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            5678999999987 45566888888999999999998 88888999999999999999888 888999999999999888


Q ss_pred             cCccc
Q 001497          950 YNNLS  954 (1066)
Q Consensus       950 ~N~l~  954 (1066)
                      .|.+.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            88764

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.59  E-value=0.38  Score=29.76  Aligned_cols=13  Identities=38%  Similarity=0.721  Sum_probs=6.3

Q ss_pred             CCCEEECcCccCc
Q 001497          894 RIQTLNLSHNNLT  906 (1066)
Q Consensus       894 ~L~~L~Ls~N~l~  906 (1066)
                      +|+.|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.59  E-value=0.38  Score=29.76  Aligned_cols=13  Identities=38%  Similarity=0.721  Sum_probs=6.3

Q ss_pred             CCCEEECcCccCc
Q 001497          894 RIQTLNLSHNNLT  906 (1066)
Q Consensus       894 ~L~~L~Ls~N~l~  906 (1066)
                      +|+.|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.70  E-value=0.16  Score=49.07  Aligned_cols=81  Identities=27%  Similarity=0.284  Sum_probs=40.8

Q ss_pred             CcCEEEcCCCcccccccccchhhhccCCCccEEecCCCC-CCccchhhccC-CCCCcEEEcCCCcCCCCCChhhhcCCCC
Q 001497           94 NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNL-CNNSILSSVAR-LSSLTSLHLSHNILQGSIDAKEFDSLSN  171 (1066)
Q Consensus        94 ~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~L~~n~-~~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~~l~~l~~  171 (1066)
                      .++.+|-+++.|..    .|++.+.+++.++.|.+.+|. +.+.....++. .++|+.|++++|.-..+-....+.++++
T Consensus       102 ~IeaVDAsds~I~~----eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn  177 (221)
T KOG3864|consen  102 KIEAVDASDSSIMY----EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN  177 (221)
T ss_pred             eEEEEecCCchHHH----HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence            45566666655543    245566666666666666554 22222333333 2566666666654222333334455555


Q ss_pred             ccEEEcC
Q 001497          172 LEELDIN  178 (1066)
Q Consensus       172 L~~L~L~  178 (1066)
                      |+.|.+.
T Consensus       178 Lr~L~l~  184 (221)
T KOG3864|consen  178 LRRLHLY  184 (221)
T ss_pred             hHHHHhc
Confidence            5555444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=87.65  E-value=0.37  Score=26.32  Aligned_cols=12  Identities=75%  Similarity=0.971  Sum_probs=4.0

Q ss_pred             CCEEEccCccCc
Q 001497          577 LQFLDLSNNKLT  588 (1066)
Q Consensus       577 L~~L~l~~n~l~  588 (1066)
                      |+.|++++|+++
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            444444444443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.32  E-value=0.46  Score=29.40  Aligned_cols=23  Identities=48%  Similarity=0.726  Sum_probs=15.0

Q ss_pred             CCCCCEEECcCCcCcccCCcccc
Q 001497          791 LNQLQLLDLSDNNLHGLIPSCFD  813 (1066)
Q Consensus       791 l~~L~~L~Ls~N~l~~~~p~~~~  813 (1066)
                      +++|++|+|++|+++..++..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35677777777777766555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.32  E-value=0.46  Score=29.40  Aligned_cols=23  Identities=48%  Similarity=0.726  Sum_probs=15.0

Q ss_pred             CCCCCEEECcCCcCcccCCcccc
Q 001497          791 LNQLQLLDLSDNNLHGLIPSCFD  813 (1066)
Q Consensus       791 l~~L~~L~Ls~N~l~~~~p~~~~  813 (1066)
                      +++|++|+|++|+++..++..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35677777777777766555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=83.67  E-value=0.04  Score=53.98  Aligned_cols=99  Identities=25%  Similarity=0.287  Sum_probs=76.2

Q ss_pred             ccCCcccCcCCcCCCCCCCCCEEECcCccCccccchhccCCCCCCEEeCCCCcCccccCccccCCCCCCEEEcccCcccc
Q 001497          876 LSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG  955 (1066)
Q Consensus       876 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g  955 (1066)
                      +|--.++...-.++......+.||++.|++. ..-..|+-++.++.||+|.|++. ..|..+.+...+..+++..|+++.
T Consensus        25 ~s~s~~s~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~  102 (326)
T KOG0473|consen   25 LSLSELSEIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ  102 (326)
T ss_pred             CCHHHhcccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh
Confidence            3333445333356778889999999999998 56677888899999999999998 889999999999999999999985


Q ss_pred             cCCCCccccCccCccccCCCCC
Q 001497          956 KIPEWTAQFATFNKSSYDGNPF  977 (1066)
Q Consensus       956 ~ip~~~~~~~~~~~~~~~gN~~  977 (1066)
                      . |...++.........-+||+
T Consensus       103 ~-p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  103 Q-PKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             C-CccccccCCcchhhhccCcc
Confidence            4 43366666666566666764

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=82.86  E-value=5.5  Score=44.00  Aligned_cols=42  Identities=24%  Similarity=0.263  Sum_probs=20.8

Q ss_pred             CCCCcceeeeccCCcCCCCCCcccCCCCCCCCCCcEEECCCC
Q 001497          321 ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN  362 (1066)
Q Consensus       321 ~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n  362 (1066)
                      ...+.+++++++++..++.+...++.+...-..++....+.|
T Consensus       437 ~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n  478 (553)
T KOG4242|consen  437 LSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLN  478 (553)
T ss_pred             ccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCC
Confidence            344555666666665555555555544444344444433333

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.08  E-value=0.35  Score=29.24  Aligned_cols=13  Identities=46%  Similarity=0.825  Sum_probs=4.7

Q ss_pred             CCCEEeCCCCcCc
Q 001497          918 HIESLDLSYNKLS  930 (1066)
Q Consensus       918 ~L~~L~Ls~N~l~  930 (1066)
                      +|++|||++|+|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1066
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-51
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-27
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-51
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-27
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-11
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-04
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		8e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  202 bits (513), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 195/683 (28%), Positives = 304/683 (44%), Gaps = 82/683 (12%)
Query: 352 AHLQELYIDNNDLRGSLPW--CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 409
           A L  L +  N L G +     L + + L+ L+VS N L      S  + L S+E L LS
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 410 NNHFRIPVSLEPLFNHS--KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 467
            N       +  + +    +LK      N+I+G+++ S  +  +F    L +SSN  +  
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF----LDVSSN--NFS 213
Query: 468 TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 527
           T   FL     L+  ++S  K+ G+F +  +   T+L+ L + ++   GP  +P    K 
Sbjct: 214 TGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKS 270
Query: 528 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF----------- 576
           L++L ++ N F G IP  +     +L   ++S N   G++P  FG+              
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 577 --------------LQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFS 622
                         L+ LDLS N+ +GE+P+ L                  G I   +  
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 623 --LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 680
                L+ L L+ N F G+IP +LS CS L  L+L+ N LSG IP  LG+L  L+ + + 
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 681 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 740
            N LEG IP E   + +L+ L +  N+++G +PS                          
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS----------------------- 487
Query: 741 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXX 800
            NC++L  + LS N L G IP WI  L  L+ L L++N+  G +P               
Sbjct: 488 -NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
Query: 801 XXXXHGLIPSCFDNTTLHESYN----------NNSSPDKPFKTSFSISGPQGSVEKKILE 850
               +G IP+     +   + N           N    K    + ++   QG   +++  
Sbjct: 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606
Query: 851 IFEFTTKNI-AYAYQGRVLSL------LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 903
           +      NI +  Y G           +  LD+S N L G+IP +IG++  +  LNL HN
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666
Query: 904 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 963
           +++G+IP    +LR +  LDLS NKL G+IP+ +  L  L    ++ NNLSG IPE   Q
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQ 725
Query: 964 FATFNKSSYDGNPFLCGLPLPIC 986
           F TF  + +  NP LCG PLP C
Sbjct: 726 FETFPPAKFLNNPGLCGYPLPRC 748

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 128/453 (28%), Positives = 209/453 (46%), Gaps = 28/453 (6%)
Query: 552 SLVYFNISMNALDGSIPS--SFGNVIFLQFLDLSNNKL--TGEIPDHLAMCCVXXXXXXX 607
           SL   ++S N+L G + +  S G+   L+FL++S+N L   G++   L +  +       
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160
Query: 608 XXXXXKGHIFSRIFS--LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP 665
                  ++   + S     L+ L + GN   G++   +S+C +L+ L +++NN S  IP
Sbjct: 161 NSIS-GANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP 217
Query: 666 RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQV 724
            +LG+   LQH+ +  N L G           L++L+IS N   G +P    PL S++ +
Sbjct: 218 -FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 274
Query: 725 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 784
            L++N   G++ +     C +L  LDLS N+  G++P +    S L  L L+ NN  GE+
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 785 PIXXXXXXXXXXXXXXXXXX-HGLIPSCFDNT-----TLHESYNNNSSPDKPFKTSFSIS 838
           P+                    G +P    N      TL  S NN S P  P        
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL----CQ 390
Query: 839 GPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTL 898
            P+ ++++  L+   FT K           S L  L LS N L G IP  +G+L++++ L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSN---CSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 899 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 958
            L  N L G IP     ++ +E+L L +N L+G+IP  L +   L    ++ N L+G+IP
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 959 EWTAQFATFNKSSYDGNPFLCGLPLPI--CRSL 989
           +W  +           N F   +P  +  CRSL
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  201 bits (512), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 195/683 (28%), Positives = 304/683 (44%), Gaps = 82/683 (12%)
Query: 352 AHLQELYIDNNDLRGSLPW--CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 409
           A L  L +  N L G +     L + + L+ L+VS N L      S  + L S+E L LS
Sbjct: 97  ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 156
Query: 410 NNHFRIPVSLEPLFNHS--KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 467
            N       +  + +    +LK      N+I+G+++ S  +  +F    L +SSN  +  
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF----LDVSSN--NFS 210
Query: 468 TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 527
           T   FL     L+  ++S  K+ G+F +  +   T+L+ L + ++   GP  +P    K 
Sbjct: 211 TGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKS 267
Query: 528 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG--------------- 572
           L++L ++ N F G IP  +     +L   ++S N   G++P  FG               
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 573 ----------NVIFLQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFS 622
                      +  L+ LDLS N+ +GE+P+ L                  G I   +  
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 623 --LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 680
                L+ L L+ N F G+IP +LS CS L  L+L+ N LSG IP  LG+L  L+ + + 
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 681 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 740
            N LEG IP E   + +L+ L +  N+++G +PS                          
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS----------------------- 484
Query: 741 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXX 800
            NC++L  + LS N L G IP WI  L  L+ L L++N+  G +P               
Sbjct: 485 -NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
Query: 801 XXXXHGLIPSCFDNTTLHESYN----------NNSSPDKPFKTSFSISGPQGSVEKKILE 850
               +G IP+     +   + N           N    K    + ++   QG   +++  
Sbjct: 544 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 603
Query: 851 IFEFTTKNI-AYAYQGRVLSL------LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 903
           +      NI +  Y G           +  LD+S N L G+IP +IG++  +  LNL HN
Sbjct: 604 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 663
Query: 904 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 963
           +++G+IP    +LR +  LDLS NKL G+IP+ +  L  L    ++ NNLSG IPE   Q
Sbjct: 664 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQ 722
Query: 964 FATFNKSSYDGNPFLCGLPLPIC 986
           F TF  + +  NP LCG PLP C
Sbjct: 723 FETFPPAKFLNNPGLCGYPLPRC 745

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 128/453 (28%), Positives = 209/453 (46%), Gaps = 28/453 (6%)
Query: 552 SLVYFNISMNALDGSIPS--SFGNVIFLQFLDLSNNKL--TGEIPDHLAMCCVXXXXXXX 607
           SL   ++S N+L G + +  S G+   L+FL++S+N L   G++   L +  +       
Sbjct: 98  SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 157
Query: 608 XXXXXKGHIFSRIFS--LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP 665
                  ++   + S     L+ L + GN   G++   +S+C +L+ L +++NN S  IP
Sbjct: 158 NSIS-GANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP 214
Query: 666 RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQV 724
            +LG+   LQH+ +  N L G           L++L+IS N   G +P    PL S++ +
Sbjct: 215 -FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 271
Query: 725 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 784
            L++N   G++ +     C +L  LDLS N+  G++P +    S L  L L+ NN  GE+
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 785 PIXXXXXXXXXXXXXXXXXX-HGLIPSCFDNT-----TLHESYNNNSSPDKPFKTSFSIS 838
           P+                    G +P    N      TL  S NN S P  P        
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL----CQ 387
Query: 839 GPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTL 898
            P+ ++++  L+   FT K           S L  L LS N L G IP  +G+L++++ L
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSN---CSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 899 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 958
            L  N L G IP     ++ +E+L L +N L+G+IP  L +   L    ++ N L+G+IP
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 959 EWTAQFATFNKSSYDGNPFLCGLPLPI--CRSL 989
           +W  +           N F   +P  +  CRSL
Sbjct: 505 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 537

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 118/276 (42%), Gaps = 56/276 (20%)
Query: 514 LAGPFRLP--IHSHKRLRFLDVSN-NNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSS 570
           L  P+ +P  + +   L FL +   NN  G IP  I   L  L Y  I+   + G+IP  
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDF 120
Query: 571 FGNVIFLQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLL 630
              +  L  LD S N L+G +P  ++                         SL NL  + 
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSIS-------------------------SLPNLVGIT 155
Query: 631 LEGNHFVGEIPQSLSKCSSL-KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP 689
            +GN   G IP S    S L   + ++ N L+GKIP    NL  L  + + +N LEG   
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS 214
Query: 690 VEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTL 749
           V F    + Q + ++ N+++           + +V LSKN L+G               L
Sbjct: 215 VLFGSDKNTQKIHLAKNSLA---------FDLGKVGLSKN-LNG---------------L 249
Query: 750 DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 785
           DL  N + G++P  +  L  L  LN++ NNL GE+P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 137/353 (38%), Gaps = 113/353 (32%)
Query: 655 LNNNNLSG-------KIPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDN 706
           +NN +LSG        IP  L NL  L  + +   N+L GPIP    +L  L  L I+  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 707 NISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG 766
           N+SG++P                    Q+K        +LVTLD SYN L+G++P  I  
Sbjct: 112 NVSGAIPD----------------FLSQIK--------TLVTLDFSYNALSGTLPPSISS 147
Query: 767 LSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTTLHESYNNNSS 826
           L  L  +    N + G +P                                 +SY + S 
Sbjct: 148 LPNLVGITFDGNRISGAIP---------------------------------DSYGSFSK 174
Query: 827 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVL-----SLLAGLDLSCNKL 881
                 TS +IS  +  +  KI     F   N+A+    R +     S+L G D +  K+
Sbjct: 175 ----LFTSMTIS--RNRLTGKIPP--TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 882 VGHIPP--------QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 933
             H+          ++G    +  L+L +N + GT+P   + L+ + SL++S+N L G+I
Sbjct: 227 --HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Query: 934 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPIC 986
           P+                               F+ S+Y  N  LCG PLP C
Sbjct: 285 PQG-------------------------GNLQRFDVSAYANNKCLCGSPLPAC 312

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 15/173 (8%)
Query: 619 RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 678
            IFS  N++   + G   V  +  S  K S    L  +NN L+  +    G+L  L+ ++
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPS--KISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354
Query: 679 MPKNHLE--GPIPVEFCRLDSLQILDISDNNISGSLPS--CFYPLSIKQVHLSKNMLHGQ 734
           +  N L+    I     ++ SLQ LDIS N++S       C +  S+  +++S N+L   
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL--- 411
Query: 735 LKEGTFFNC--SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 785
               T F C    +  LDL  N +  SIP  +  L  L  LN+A N L+  VP
Sbjct: 412 --TDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VP 460

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 155 NILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD-GNKL 213
           N L G IDA  F  L+ LE+LD++DN    V     +RGL  L +L L   G+++ G  L
Sbjct: 65  NALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGL 123
Query: 214 LQSMGSFPSLNTLHLESNNFTATLTTT-QELHNFTNL 249
            + +    +L  L+L+ NN  A    T ++L N T+L
Sbjct: 124 FRGLA---ALQYLYLQDNNLQALPDNTFRDLGNLTHL 157

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1066
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-163
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-103
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-54
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-59
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-59
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-57
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-57
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-40
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-32
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-68
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-61
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-55
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-65
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-64
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-61
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-60
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-38
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-38
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-54
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-47
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-40
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-45
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-40
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-37
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-30
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-28
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-30
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-29
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-23
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-24
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-22
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-21
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-16
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-16
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-15
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-12
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-12
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-09
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  499 bits (1288), Expect = e-163
 Identities = 216/799 (27%), Positives = 342/799 (42%), Gaps = 111/799 (13%)

Query: 197 LKSLDLSGVGIR-DGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLD 255
           + S+DLS   +    + +  S+ S   L +L L +++   +++         +L  L L 
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS---GFKCSASLTSLDLS 108

Query: 256 DSSLH--ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNT 313
            +SL   ++ L S+GS    LK L++S   ++      G     SLE LD+    I+   
Sbjct: 109 RNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167

Query: 314 SFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLA 373
               ++ +    LK+L++SG+ +   S  +    +    +L+ L + +N+    +P+ L 
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKI---SGDV---DVSRCVNLEFLDVSSNNFSTGIPF-LG 220

Query: 374 NTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDA 433
           + ++L+ LD+S N+L+G  S + +   T ++ L +S+N F  P+   P      L+    
Sbjct: 221 DCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPI---PPLPLKSLQYLSL 276

Query: 434 KNNEINGEINESHSLTPKFQLKSLSLSSNY--GDSVTFPKFLYHQHELKEAELSHIKMIG 491
             N+  GEI +  S      L  L LS N+  G     P F      L+   LS     G
Sbjct: 277 AENKFTGEIPDFLSGACD-TLTGLDLSGNHFYG---AVPPFFGSCSLLESLALSSNNFSG 332

Query: 492 EFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHS-HKRLRFLDVSNNNFQGHIPVEIGDI- 549
           E P   L     L+ L L  +  +G     + +    L  LD+S+NNF G I   +    
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392

Query: 550 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 609
             +L    +  N   G IP +  N   L  L LS N L+G IP  L      L  L L  
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL-SKLRDLKLWL 451

Query: 610 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 669
           N L+G I   +  ++ L  L+L+ N   GEIP  LS C++L  + L+NN L+G+IP+W+G
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511

Query: 670 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 729
            L+ L  + +  N   G IP E     SL  LD++ N  +G++P+               
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM------------- 558

Query: 730 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN--NLEGEVPIQ 787
                      F  S      ++ N++ G    +I         + A N    +G    Q
Sbjct: 559 -----------FKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603

Query: 788 LCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKK 847
           L RL+     +++     G     FDN                                 
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDN--------------------------------- 630

Query: 848 ILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG 907
                                  +  LD+S N L G+IP +IG++  +  LNL HN+++G
Sbjct: 631 --------------------NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670

Query: 908 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATF 967
           +IP    +LR +  LDLS NKL G+IP+ +  L  L    ++ NNLSG IPE   QF TF
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETF 729

Query: 968 NKSSYDGNPFLCGLPLPIC 986
             + +  NP LCG PLP C
Sbjct: 730 PPAKFLNNPGLCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  340 bits (875), Expect = e-103
 Identities = 196/777 (25%), Positives = 309/777 (39%), Gaps = 125/777 (16%)

Query: 2   LDLSGNAFN---NNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGN-- 56
           +DLS    N   + V SSL  L+ L SL+LS++ + GS+          L  LD+  N  
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS--GFKCSASLTSLDLSRNSL 112

Query: 57  --KIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGL 114
              +         S LK L +S         V      N+LEVLD+S N I +     G 
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI-SGANVVGW 171

Query: 115 ERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEE 174
                  +LK L + GN  +  +   V+R  +L  L +S N     I        S L+ 
Sbjct: 172 VLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQH 227

Query: 175 LDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFP-----SLNTLHLE 229
           LDI+ N++   + SR      +LK L++S       N+    +G  P     SL  L L 
Sbjct: 228 LDISGNKLSG-DFSRAISTCTELKLLNIS------SNQF---VGPIPPLPLKSLQYLSLA 277

Query: 230 SNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLS 289
            N FT  +           L  L L  +  + ++    GS    L++L++S    +G L 
Sbjct: 278 ENKFTGEIPDFL-SGACDTLTGLDLSGNHFYGAVPPFFGSC-SLLESLALSSNNFSGELP 335

Query: 290 GQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQ-GL 348
                  + L+ LD+ F     +    + +     SL  L LS +     S  IL     
Sbjct: 336 MDTLLKMRGLKVLDLSFNE--FSGELPESLTNLSASLLTLDLSSNNF---SGPILPNLCQ 390

Query: 349 CPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRL 408
            P   LQELY+ NN   G +P  L+N + L  L +SFN L+G+I SS L  L+ + +L+L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKL 449

Query: 409 SNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDS 466
             N     IP     L     L+      N++ GEI     L+    L  +SLS+N    
Sbjct: 450 WLNMLEGEIPQE---LMYVKTLETLILDFNDLTGEI--PSGLSNCTNLNWISLSNN---- 500

Query: 467 VTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHK 526
                                ++ GE P W                         I   +
Sbjct: 501 ---------------------RLTGEIPKW-------------------------IGRLE 514

Query: 527 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 586
            L  L +SNN+F G+IP E+GD   SL++ +++ N  +G+IP++       Q   ++ N 
Sbjct: 515 NLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFK----QSGKIAANF 569

Query: 587 LTGEIPDHLAMCCVNLEF-LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 645
           + G+   ++    +  E   + +    +G    ++  L       +    + G    +  
Sbjct: 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629

Query: 646 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 705
              S+  L ++ N LSG IP+ +G++  L  + +  N + G IP E   L  L ILD+S 
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689

Query: 706 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD 762
           N + G +P                              + L  +DLS N L+G IP+
Sbjct: 690 NKLDGRIPQ------------------------AMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.7 bits (239), Expect = 3e-20
 Identities = 69/344 (20%), Positives = 125/344 (36%), Gaps = 41/344 (11%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKID- 59
            L L  N F   +  +L+  S L SL+LS N L G+I    L SL  L +L +  N ++ 
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI-PSSLGSLSKLRDLKLWLNMLEG 456

Query: 60  KFMVSKG-LSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEI-DNLVVPQGLERL 117
           +       +  L++L L      G        +  NL  + +S N +   +  P+    +
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIP-SGLSNCTNLNWISLSNNRLTGEI--PKW---I 510

Query: 118 SRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDI 177
            RL  L  L L  N  + +I + +    SL  L L+ N+  G+I        S     + 
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI-PAAMFKQSGKIAANF 569

Query: 178 NDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATL 237
              +          +     K    +G  +       + +    + N  ++ S  +    
Sbjct: 570 IAGKR-----YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624

Query: 238 TTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSG---QGFP 294
           +      N  ++ +L +  + L   + + IGS  P L  L++     N  +SG       
Sbjct: 625 SP--TFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGH---ND-ISGSIPDEVG 677

Query: 295 HFKSLEHLDMRFARIALNTSFLQIIGE------SMPSLKYLSLS 332
             + L  LD+         S  ++ G       ++  L  + LS
Sbjct: 678 DLRGLNILDL---------SSNKLDGRIPQAMSALTMLTEIDLS 712

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.4 bits (129), Expect = 3e-07
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 891 NLTRIQTLNLSHNNLT---GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 947
              ++ +++LS   L      +  +  +L  +ESL LS + ++G +        +L    
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 948 VAYNNLSGKIPEW 960
           ++ N+LSG +   
Sbjct: 107 LSRNSLSGPVTTL 119

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  285 bits (731), Expect = 8e-84
 Identities = 121/706 (17%), Positives = 225/706 (31%), Gaps = 94/706 (13%)

Query: 296 FKSLEHLDMRFARIA--LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 353
             ++  L++   ++      +F          L  L +  +T+    S++  +    L  
Sbjct: 24  PTNITVLNLTHNQLRRLPAANF-----TRYSQLTSLDVGFNTI----SKLEPELCQKLPM 74

Query: 354 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 413
           L+ L + +N+L        A  T+L  L +  N +   I ++P V   ++  L LS+N  
Sbjct: 75  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGL 133

Query: 414 RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFL 473
                L        L+     NN+I    +E   +     LK L LSSN       P   
Sbjct: 134 SS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF-SPGCF 191

Query: 474 YHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDV 533
           +    L    L+++++       L                          ++  +R L +
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLE----------------------LANTSIRNLSL 229

Query: 534 SNNNFQGHIPVEIGDI-LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP 592
           SN+            +   +L   ++S N L+     SF  +  L++  L  N +     
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289

Query: 593 DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKG 652
             L     N+ +L+L  +                    +           S      L+ 
Sbjct: 290 HSLH-GLFNVRYLNLKRS---------------FTKQSISLASLPKIDDFSFQWLKCLEH 333

Query: 653 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE----FCRLDSLQILDISDNNI 708
           L + +N++ G        L  L+++ +  +                   L IL+++ N I
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 709 SGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGL 767
           S      F  L  ++ + L  N +  +L    +    ++  + LSYN       +    +
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453

Query: 768 SQLSHLNLAHNNLEG--EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESY 821
             L  L L    L+     P     L  L +LDLS+NN+  +     +       L   +
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

Query: 822 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 881
           NN                         L             Y  + LS L  L+L  N  
Sbjct: 514 NN-------------------------LARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548

Query: 882 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVD-L 940
                    +L  ++ ++L  NNL       F+N   ++SL+L  N ++    +      
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608

Query: 941 NTLAIFIVAYNNLSGKIP--EWTAQFA--TFNKSSYDGNPFLCGLP 982
             L    + +N          W   +   T        + +LC  P
Sbjct: 609 RNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  261 bits (669), Expect = 3e-75
 Identities = 132/729 (18%), Positives = 231/729 (31%), Gaps = 118/729 (16%)

Query: 94  NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLS 153
           + EV D S  ++    VP  L      + +  L+L  N       ++  R S LTSL + 
Sbjct: 5   SHEVADCSHLKLTQ--VPDDL-----PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 154 HNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL 213
            N +   ++ +    L  L+ L++  NE+  +   + +     L  L L    I+     
Sbjct: 58  FNTISK-LEPELCQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIKN- 114

Query: 214 LQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF-P 272
                   +L TL L  N  ++  T         NL+ L L ++ +     + +      
Sbjct: 115 -NPFVKQKNLITLDLSHNGLSS--TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171

Query: 273 SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLS 332
           SLK L +S  ++     G  F     L  L +   ++  + +    +  +  S++ LSLS
Sbjct: 172 SLKKLELSSNQIKEFSPG-CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 333 GSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSI 392
            S L T S+           +L  L +  N+L        A    L    + +N +    
Sbjct: 231 NSQLSTTSNTTF--LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288

Query: 393 SSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF 452
           S S L  L ++  L L  +  +  +S                   +    + S       
Sbjct: 289 SHS-LHGLFNVRYLNLKRSFTKQSIS----------------LASLPKIDDFSFQWLKC- 330

Query: 453 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND 512
            L+ L++  N                           I    + +      L++L L   
Sbjct: 331 -LEHLNMEDN--------------------------DIPGIKSNMFTGLINLKYLSL--- 360

Query: 513 SLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG 572
                      S+       ++N  F              L   N++ N +      +F 
Sbjct: 361 -----------SNSFTSLRTLTNETFVSL-------AHSPLHILNLTKNKISKIESDAFS 402

Query: 573 NVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLE 632
            +  L+ LDL  N++  E+         N+  + LS N       +    + +L+ L+L 
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462

Query: 633 GNHF--VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE----- 685
                 V   P       +L  L L+NNN++      L  L+ L+ + +  N+L      
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522

Query: 686 ---GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN 742
              G        L  L IL++  N                            +    F +
Sbjct: 523 ANPGGPIYFLKGLSHLHILNLESNGFDE------------------------IPVEVFKD 558

Query: 743 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSD 801
              L  +DL  N LN       +    L  LNL  N +              L  LD+  
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

Query: 802 NNLHGLIPS 810
           N       S
Sbjct: 619 NPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  237 bits (606), Expect = 1e-66
 Identities = 131/705 (18%), Positives = 233/705 (33%), Gaps = 94/705 (13%)

Query: 22  SLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSGTG 79
           S      S  +L    D    D   ++  L++  N++ +   +     S+L SL +    
Sbjct: 5   SHEVADCSHLKLTQVPD----DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 80  FKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILS 139
                +         L+VL++  NE+  L         +  + L +L L  N       +
Sbjct: 61  ISK-LEPELCQKLPMLKVLNLQHNELSQL--SDKT--FAFCTNLTELHLMSNSIQKIKNN 115

Query: 140 SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNV-EVSRGYRGLRKLK 198
              +  +L +L LSHN L  +        L NL+EL +++N+I  +            LK
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 199 SLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLT-TTQELHNFTNLEYLTLDDS 257
            L+LS   I++ +       +   L  L L +     +LT         T++  L+L +S
Sbjct: 175 KLELSSNQIKEFSP--GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

Query: 258 SL-HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFL 316
            L   S    +G  + +L  L +S   +N  +    F     LE+  + +  I       
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNI---QHLF 288

Query: 317 QIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTT 376
                 + +++YL+L  S                     +  I    L     +      
Sbjct: 289 SHSLHGLFNVRYLNLKRS-------------------FTKQSISLASLPKIDDFSFQWLK 329

Query: 377 SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLF---NHSKLKIFDA 433
            L  L++  N + G  S+     L +++ L LSN+   +       F    HS L I + 
Sbjct: 330 CLEHLNMEDNDIPGIKSNM-FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388

Query: 434 KNNEINGEINES-HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGE 492
             N+I+   +++   L     L+ L L  N                         ++  E
Sbjct: 389 TKNKISKIESDAFSWLG---HLEVLDLGLN-------------------------EIGQE 420

Query: 493 FPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQG--HIPVEIGDIL 550
                      +  +YL  +      R        L+ L +     +     P      L
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP-L 479

Query: 551 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 610
            +L   ++S N +          +  L+ LDL +N L                   L  +
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA-----------------RLWKH 522

Query: 611 SLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGN 670
           +  G     +  L +L  L LE N F     +       LK + L  NNL+        N
Sbjct: 523 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582

Query: 671 LKGLQHIVMPKNHLEGPIPVEFCR-LDSLQILDISDNNISGSLPS 714
              L+ + + KN +       F     +L  LD+  N    +  S
Sbjct: 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  224 bits (573), Expect = 3e-62
 Identities = 133/643 (20%), Positives = 213/643 (33%), Gaps = 78/643 (12%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           LD+  N  +        +L  L+ L L  N L    D K      +L EL +  N I K 
Sbjct: 54  LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD-KTFAFCTNLTELHLMSNSIQKI 112

Query: 62  MVS--KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSR 119
             +       L +L LS  G      +       NL+ L +S N+I  L        +  
Sbjct: 113 KNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQAL--KSEELDIFA 169

Query: 120 LSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEF--DSLSNLEELDI 177
            S LKKL+L  N            +  L  L L++  L  S+  K     + +++  L +
Sbjct: 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229

Query: 178 NDNEIDNV-EVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTAT 236
           +++++      +        L  LDLS   +        S    P L    LE NN    
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN--DSFAWLPQLEYFFLEYNNIQHL 287

Query: 237 LTTTQELHNFTNLEYLTLDDSSLHISL-LQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPH 295
            + +  LH   N+ YL L  S    S+ L S+  I                      F  
Sbjct: 288 FSHS--LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS------------------FQW 327

Query: 296 FKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQ 355
            K LEHL+M    I         +   + +LKYLSLS S     +           + L 
Sbjct: 328 LKCLEHLNMEDNDI---PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384

Query: 356 ELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRI 415
            L +  N +        +    L +LD+  N++   ++      L +I E+ LS N +  
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

Query: 416 PVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYH 475
            ++         L+    +   +    +      P   L  L LS+N             
Sbjct: 445 -LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN------------ 491

Query: 476 QHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL--------VNDSLAGPFRLPIHSHKR 527
                         I    + +LE   KLE L L           +  G     +     
Sbjct: 492 --------------IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537

Query: 528 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 587
           L  L++ +N F         D L  L   ++ +N L+    S F N + L+ L+L  N +
Sbjct: 538 LHILNLESNGFDEIPVEVFKD-LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596

Query: 588 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLL 630
           T            NL  L +  N           +  ++ W +
Sbjct: 597 TSVEKKVFGPAFRNLTELDMRFNPFDC-------TCESIAWFV 632

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  199 bits (509), Expect = 6e-54
 Identities = 80/427 (18%), Positives = 149/427 (34%), Gaps = 51/427 (11%)

Query: 552 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNS 611
           S    + S   L   +P        +  L+L++N+L      +       L  L +  N+
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFTRY-SQLTSLDVGFNT 60

Query: 612 LKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 671
           +          L  L+ L L+ N       ++ + C++L  L+L +N++           
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 672 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL---SIKQVHLSK 728
           K L  + +  N L         +L++LQ L +S+N I              S+K++ LS 
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 729 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI---DGLSQLSHLNLAHNNLEGEVP 785
           N +      G F     L  L L+   L  S+ + +      + + +L+L+++ L     
Sbjct: 181 NQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

Query: 786 --IQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISG 839
                 +   L +LDLS NNL+ +    F            YNN                
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN---------------- 283

Query: 840 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSL---LAGLDLSCNKLVGHIPPQIGNLTRIQ 896
                      I    + ++   +  R L+L        +S   L          L  ++
Sbjct: 284 -----------IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 897 TLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV----DLNTLAIFIVAYNN 952
            LN+  N++ G     F+ L +++ L LS +  S +            + L I  +  N 
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 953 LSGKIPE 959
           +S    +
Sbjct: 393 ISKIESD 399

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  155 bits (393), Expect = 3e-39
 Identities = 79/424 (18%), Positives = 134/424 (31%), Gaps = 65/424 (15%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSID--------VKELDSLRDLEELD 52
           MLDLS N  N     S A L  L   +L  N ++            V+ L+  R   +  
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311

Query: 53  IGGNKIDKFMVS--KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVV 110
           I    + K      + L  L+ L +      G      F    NL+ L +S +      +
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTL 370

Query: 111 PQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLS 170
                     S L  L+L  N  +     + + L  L  L L  N +   +  +E+  L 
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430

Query: 171 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLES 230
           N+ E+ ++ N+   +     +  +  L+ L L  V +++ +          +L  L L +
Sbjct: 431 NIFEIYLSYNKYLQLT-RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 231 NNFTATLTTTQELHNFTNLEYLTLDDSSL-HISLLQSIGSIFPSLKNLSMSGCEVNGVLS 289
           NN          L     LE L L  ++L  +    + G     LK LS           
Sbjct: 490 NNIAN--INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS----------- 536

Query: 290 GQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLC 349
                                               L  L+L  +        +      
Sbjct: 537 -----------------------------------HLHILNLESNGFDEIPVEVFK---- 557

Query: 350 PLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 409
            L  L+ + +  N+L         N  SL+ L++  N +T            ++ EL + 
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

Query: 410 NNHF 413
            N F
Sbjct: 618 FNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  115 bits (291), Expect = 1e-26
 Identities = 64/271 (23%), Positives = 107/271 (39%), Gaps = 18/271 (6%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L+L+ N  +     + + L  L  L L  N +   +  +E   L ++ E+ +  NK  + 
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445

Query: 62  MVS--KGLSKLKSLGLSGTGFKG-TFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLS 118
             +    +  L+ L L     K        F    NL +LD+S N I N+      + L 
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND----DMLE 501

Query: 119 RLSKLKKLDLRGN--------LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLS 170
            L KL+ LDL+ N              +  +  LS L  L+L  N     I  + F  L 
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLF 560

Query: 171 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLES 230
            L+ +D+  N ++ +  S  +     LKSL+L    I    K +    +F +L  L +  
Sbjct: 561 ELKIIDLGLNNLNTLPASV-FNNQVSLKSLNLQKNLITSVEKKVFG-PAFRNLTELDMRF 618

Query: 231 NNFTATLTTTQELHNFTNLEYLTLDDSSLHI 261
           N F  T  +     N+ N  +  + + S H 
Sbjct: 619 NPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.1 bits (193), Expect = 8e-15
 Identities = 34/192 (17%), Positives = 54/192 (28%), Gaps = 56/192 (29%)

Query: 769 QLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPD 828
                + +H  L  +VP  L     + +L+L+ N L  L  + F                
Sbjct: 5   SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTR-------------- 47

Query: 829 KPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ 888
                                                   S L  LD+  N +    P  
Sbjct: 48  ---------------------------------------YSQLTSLDVGFNTISKLEPEL 68

Query: 889 IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 948
              L  ++ LNL HN L+     TF+   ++  L L  N +        V    L    +
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128

Query: 949 AYNNLSGKIPEW 960
           ++N LS      
Sbjct: 129 SHNGLSSTKLGT 140

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  249 bits (637), Expect = 2e-71
 Identities = 79/609 (12%), Positives = 176/609 (28%), Gaps = 87/609 (14%)

Query: 372 LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP---LFNHSKL 428
           L +   +  L +     +G +  + +  LT +E L L ++  ++   L     +  +   
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 429 KIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIK 488
           +              +         L    ++S+     +  K      +  +       
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ-QKSIKKSSRITLKDTQIGQLSNN 194

Query: 489 MIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD 548
            I      ++   TKL   Y+ N             ++                 ++  +
Sbjct: 195 -ITFVSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLKWDN 247

Query: 549 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAM-------CCVN 601
            L  L    +        +P+    +  +Q ++++ N+                      
Sbjct: 248 -LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 602 LEFLSLSNNSLK-GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL 660
           ++ + +  N+LK   + + +  ++ L  L    N   G++P +      L  L L  N +
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI 365

Query: 661 SGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRLDSLQILDISDNNISGSLPSCFYPL 719
           +     + G  + ++++    N L+  P   +   +  +  +D S N I       F PL
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

Query: 720 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNN 779
                              T F   ++ +++LS N ++    +     S LS +NL  N 
Sbjct: 426 DP-----------------TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468

Query: 780 LEG-------EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-----TTLHESYNNNSSP 827
           L         +          L  +DL  N L  L              +  SYN+    
Sbjct: 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS---- 524

Query: 828 DKPFKTSFSISGPQGSVEKKILEIFEFTT--KNIAYAYQGRVLSLLAGLDLSCNKLVGHI 885
                                     F+        +   +   +    D   N+ +   
Sbjct: 525 --------------------------FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558

Query: 886 PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAI 945
           P  I     +  L +  N++         N+     LD+  N         +       +
Sbjct: 559 PEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPNISIDLSYVCPYIEAGM 615

Query: 946 FIVAYNNLS 954
           +++ Y+   
Sbjct: 616 YMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  221 bits (564), Expect = 2e-61
 Identities = 76/542 (14%), Positives = 171/542 (31%), Gaps = 75/542 (13%)

Query: 453 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWL---LENNTKLEFLYL 509
           ++  LSL    G S   P  +    EL+   L           +    +  N   E    
Sbjct: 82  RVTGLSLEGF-GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 510 VNDSLAGPF--RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI 567
           +       F    P      L    ++++  Q  I      I           N +   +
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR-ITLKDTQIGQLSNNI-TFV 198

Query: 568 PSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLR 627
             +   +  L+   + N+    E        C   E  +            +  +L++L 
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLKWDNLKDLT 252

Query: 628 WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL--------SGKIPRWLGNLKGLQHIVM 679
            + +     + ++P  L     ++ + +  N            +        + +Q I +
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

Query: 680 PKNHL-EGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEG 738
             N+L   P+     ++  L +L+   N + G LP+    + +  ++L+ N +   +   
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE-IPAN 371

Query: 739 TFFNCSSLVTLDLSYNYLNGSIPDW--IDGLSQLSHLNLAHNNLEG-------EVPIQLC 789
                  +  L  ++N L   IP+      +S +S ++ ++N +          +     
Sbjct: 372 FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 790 RLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVE 845
           +   +  ++LS+N +       F      ++++   N              ++    +  
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-------------LTEIPKNSL 477

Query: 846 KKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI--GNLTRIQTLNLSHN 903
           K   E F             +   LL  +DL  NKL   +        L  +  ++LS+N
Sbjct: 478 KDENENF-------------KNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYN 523

Query: 904 NLTGTIPLTFSNLRHIESL------DLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 957
           + +   P    N   ++        D   N+   + P  +    +L    +  N++   +
Sbjct: 524 SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-V 581

Query: 958 PE 959
            E
Sbjct: 582 NE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  214 bits (548), Expect = 2e-59
 Identities = 61/470 (12%), Positives = 151/470 (32%), Gaps = 72/470 (15%)

Query: 522 IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG----SIPSSFGNVIFL 577
           ++S+ R+  L +      G +P  IG  L  L    +  +          P      +  
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 578 QFLDLSNNKLTGEIPDHLAMC-CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 636
           +              D+       +L    ++++  +  I            +    N+ 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 637 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 696
              + +++ + + L+  Y+ N+    +        +  ++             +++  L 
Sbjct: 196 -TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLK 249

Query: 697 SLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKE-------GTFFNCSSLVT 748
            L  +++ +      LP+    L  ++ ++++ N      +                +  
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 749 LDLSYNYL-NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 807
           + + YN L    +   +  + +L  L   +N LEG++P       +L  L+L+ N +  +
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEI 368

Query: 808 IPSCFDNTT----LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 863
             +    T     L  ++N                         I  IF+  +       
Sbjct: 369 PANFCGFTEQVENLSFAHNKLKY---------------------IPNIFDAKS------- 400

Query: 864 QGRVLSLLAGLDLSCNKLVG-------HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 916
               +S+++ +D S N++          + P       + ++NLS+N ++      FS  
Sbjct: 401 ----VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 917 RHIESLDLSYNKLSG-------KIPRQLVDLNTLAIFIVAYNNLSGKIPE 959
             + S++L  N L+               +   L    + +N L+    +
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  214 bits (546), Expect = 4e-59
 Identities = 82/545 (15%), Positives = 180/545 (33%), Gaps = 62/545 (11%)

Query: 322 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLA--NTTSLR 379
            +  L+ L+L       N      +G+      ++        + +        + + L 
Sbjct: 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162

Query: 380 ILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF-RIPVSLEPLFNHSKLKIFDAKNNEI 438
              ++ +    SI  S         ++   +N+   +  ++      +KL+ F   N+  
Sbjct: 163 KDCINSDPQQKSIKKS-SRITLKDTQIGQLSNNITFVSKAV---MRLTKLRQFYMGNSPF 218

Query: 439 NGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLL 498
             E          ++ ++   +  Y    T      +  +L + E+ +   + + P +L 
Sbjct: 219 VAENICE-----AWENENSEYAQQYK---TEDLKWDNLKDLTDVEVYNCPNLTKLPTFL- 269

Query: 499 ENNTKLEFLYLVNDSLAGPFRLP--------IHSHKRLRFLDVSNNNFQ-GHIPVEIGDI 549
           +   +++ + +  +      +L             ++++ + +  NN +   +   +   
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK- 328

Query: 550 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 609
           +  L       N L+G +P+ FG+ I L  L+L+ N++T  IP +       +E LS ++
Sbjct: 329 MKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAH 386

Query: 610 NSLKG-HIFSRIFSLRNLRWLLLEGNHFVG-------EIPQSLSKCSSLKGLYLNNNNLS 661
           N LK         S+  +  +    N            +  +  K  ++  + L+NN +S
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 662 GKIPRWLGNLKGLQHIVMPKNHLEG-------PIPVEFCRLDSLQILDISDNNISGSLPS 714
                       L  I +  N L              F     L  +D+  N ++  L  
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505

Query: 715 CFYPL---SIKQVHLSKNMLHGQLKEGTFFNCSSLVTL------DLSYNYLNGSIPDWID 765
            F       +  + LS N       +    N S+L         D   N      P+ I 
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSKFPTQ--PLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563

Query: 766 GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT----LHESY 821
               L+ L +  N++   V  ++     + +LD+ DN    +  S              Y
Sbjct: 564 LCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFY 620

Query: 822 NNNSS 826
           +    
Sbjct: 621 DKTQD 625

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  209 bits (533), Expect = 2e-57
 Identities = 93/667 (13%), Positives = 178/667 (26%), Gaps = 143/667 (21%)

Query: 140 SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKS 199
           S+     +T L L      G +       L+ LE L +  +                   
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRV-PDAIGQLTELEVLALGSHGEK---------------- 118

Query: 200 LDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL 259
                  + +     + + +  S         ++  T        +F++L    ++    
Sbjct: 119 -------VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171

Query: 260 HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQII 319
             S+ +S   I      +      +  V           L    M       N+ F+   
Sbjct: 172 QKSIKKSSR-ITLKDTQIGQLSNNITFVSKA--VMRLTKLRQFYMG------NSPFVAEN 222

Query: 320 GESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLR 379
                  +    +         +  D     L  L ++ + N      LP  L     ++
Sbjct: 223 ICEAWENENSEYA------QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276

Query: 380 ILDVSFNQLTGSISS-------SPLVHLTSIEELRLSNNHFR---IPVSLEPLFNHSKLK 429
           +++V+ N+              +       I+ + +  N+ +   +  SL       KL 
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL---QKMKKLG 333

Query: 430 IFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKM 489
           + +   N++ G++    S     +L SL+L+ N                           
Sbjct: 334 MLECLYNQLEGKLPAFGSEI---KLASLNLAYN--------------------------Q 364

Query: 490 IGEFPNWLLENNTKLEFLYLVNDSLAG-PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD 548
           I E P        ++E L   ++ L   P      S   +  +D S N            
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 549 I------LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC---- 598
           +        ++   N+S N +       F     L  ++L  N LT    + L       
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 599 --CVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL 655
                L  + L  N L          +L  L  + L  N F  + P      S+LKG  +
Sbjct: 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGI 543

Query: 656 NNN-NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 714
            N  +  G                   N      P       SL  L I  N+I   +  
Sbjct: 544 RNQRDAQG-------------------NRTLREWPEGITLCPSLTQLQIGSNDIR-KVNE 583

Query: 715 CFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLN 774
                                         ++  LD+  N        ++    +     
Sbjct: 584 KI--------------------------TPNISVLDIKDNPNISIDLSYVCPYIEAGMYM 617

Query: 775 LAHNNLE 781
           L ++  +
Sbjct: 618 LFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  207 bits (529), Expect = 7e-57
 Identities = 89/617 (14%), Positives = 179/617 (29%), Gaps = 97/617 (15%)

Query: 216 SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLK 275
           S+ S   +  L LE    +  +     +   T LE L L      ++          +  
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVP--DAIGQLTELEVLALGSHGEKVNERLFGPKGISANM 133

Query: 276 NLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGST 335
           +                  +    +  D+    I  +     I   S  +LK   +    
Sbjct: 134 SDEQKQKMRMH-YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG--- 189

Query: 336 LGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSS 395
             +N+   + + +  L  L++ Y+ N+              +       + Q   +    
Sbjct: 190 QLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLK 244

Query: 396 PLVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQ 453
              +L  + ++ + N     ++P  L        L                        +
Sbjct: 245 -WDNLKDLTDVEVYNCPNLTKLPTFL------KALP-----------------------E 274

Query: 454 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWL--LENNTKLEFLYLVN 511
           ++ ++++ N                         + + +    L       K++ +Y+  
Sbjct: 275 MQLINVACNR--------------------GISGEQLKDDWQALADAPVGEKIQIIYIGY 314

Query: 512 DSLA-GPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSS 570
           ++L   P    +   K+L  L+   N  +G +P   G     L   N++ N +     + 
Sbjct: 315 NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS-EIKLASLNLAYNQITEIPANF 372

Query: 571 FGNVIFLQFLDLSNNKLTGEIPDHLAMC-CVNLEFLSLSNNSLKG-------HIFSRIFS 622
            G    ++ L  ++NKL   IP+         +  +  S N +          +    F 
Sbjct: 373 CGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 623 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG-------KIPRWLGNLKGLQ 675
             N+  + L  N       +  S  S L  + L  N L+               N   L 
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491

Query: 676 HIVMPKNHLEG-PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS-------IKQVHLS 727
            I +  N L           L  L  +D+S N+ S   P+     S         Q    
Sbjct: 492 SIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550

Query: 728 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ 787
            N    +  E     C SL  L +  N +   + + I     +S L++  N         
Sbjct: 551 GNRTLREWPE-GITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSY 606

Query: 788 LCRLNQLQLLDLSDNNL 804
           +C   +  +  L  +  
Sbjct: 607 VCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  206 bits (525), Expect = 3e-56
 Identities = 70/515 (13%), Positives = 156/515 (30%), Gaps = 88/515 (17%)

Query: 485 SHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPV 544
             + M G  P   L +N ++  L L                              G +P 
Sbjct: 64  KELDMWGAQPGVSLNSNGRVTGLSL------------------------EGFGASGRVPD 99

Query: 545 EIGDILPSLVYFNISMNALDG----SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC-C 599
            IG  L  L    +  +          P      +  +              D+      
Sbjct: 100 AIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158

Query: 600 VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN 659
            +L    ++++  +  I            +    N+    + +++ + + L+  Y+ N+ 
Sbjct: 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSP 217

Query: 660 LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL 719
              +        +  ++             +++  L  L  +++ +      LP+    L
Sbjct: 218 FVAENICEAWENENSEY-----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272

Query: 720 -SIKQVHLSKNMLHGQLKE-------GTFFNCSSLVTLDLSYNYL-NGSIPDWIDGLSQL 770
             ++ ++++ N      +                +  + + YN L    +   +  + +L
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 771 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT----LHESYNNNSS 826
             L   +N LEG++P       +L  L+L+ N +  +  +    T     L  ++N    
Sbjct: 333 GMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391

Query: 827 -PDKPFKTSFS-----------ISG-PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 873
            P+     S S           I      + +      F+                 ++ 
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN--------------VSS 437

Query: 874 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG-------TIPLTFSNLRHIESLDLSY 926
           ++LS N++           + + ++NL  N LT             F N   + S+DL +
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 927 NKLSGKIPRQLVDLN--TLAIFIVAYNNLSGKIPE 959
           NKL+  +           L    ++YN+ S   P 
Sbjct: 498 NKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPT 530

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  179 bits (456), Expect = 2e-47
 Identities = 56/421 (13%), Positives = 126/421 (29%), Gaps = 79/421 (18%)

Query: 556 FNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG- 614
           FN  ++        S  +   +  L L     +G +PD +      LE L+L ++  K  
Sbjct: 62  FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVN 120

Query: 615 ---HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSK--CSSLKGLYLNNNNLSGKIPRWLG 669
                   I +  +         H+         +   S L    +N++     I +   
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

Query: 670 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 729
                  I    N++   +     RL  L+   + ++          +       +    
Sbjct: 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE----NSEYA 235

Query: 730 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL--------E 781
             +    +  + N   L  +++        +P ++  L ++  +N+A N          +
Sbjct: 236 QQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294

Query: 782 GEVPIQLCRLNQLQLLDLSDNNLHGL-IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGP 840
            +         ++Q++ +  NNL    + +                              
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK-------------------------- 328

Query: 841 QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNL 900
                                      +  L  L+   N+L G   P  G+  ++ +LNL
Sbjct: 329 ---------------------------MKKLGMLECLYNQLEG-KLPAFGSEIKLASLNL 360

Query: 901 SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR--QLVDLNTLAIFIVAYNNLSGKIP 958
           ++N +T            +E+L  ++NKL   IP       ++ ++    +YN +     
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

Query: 959 E 959
           +
Sbjct: 420 K 420

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  172 bits (439), Expect = 3e-45
 Identities = 88/667 (13%), Positives = 184/667 (27%), Gaps = 139/667 (20%)

Query: 16  SLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGL 75
           SL     +  L L      G +    +  L +LE L +G +         G   + +   
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISAN-- 132

Query: 76  SGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNN 135
                         D       +      +D              S L K  +  +    
Sbjct: 133 ------------MSDEQKQKMRMHYQKTFVDYD-------PREDFSDLIKDCINSDPQQK 173

Query: 136 SILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLR 195
           SI  S       T +    N +   +  K    L+ L +  + ++      +   +    
Sbjct: 174 SIKKSSRITLKDTQIGQLSNNI-TFVS-KAVMRLTKLRQFYMGNSPFVAENICEAWE-NE 230

Query: 196 KLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLD 255
             +                    +   L  + + +      L     L     ++ + + 
Sbjct: 231 NSEYAQQYKT-------EDLKWDNLKDLTDVEVYNCPNLTKL--PTFLKALPEMQLINVA 281

Query: 256 DSSL-HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTS 314
            +       L+                                                 
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGE------------------------------------ 305

Query: 315 FLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLAN 374
                      ++ + +  + L    +  ++  L  +  L  L    N L G LP    +
Sbjct: 306 ----------KIQIIYIGYNNL---KTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS 351

Query: 375 TTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDA 433
              L  L++++NQ+T  I ++       +E L  ++N  + IP   +   + S +   D 
Sbjct: 352 EIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFD-AKSVSVMSAIDF 409

Query: 434 KNNEINGEINESHSLTPKF-----QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIK 488
             NEI     ++             + S++LS+N                          
Sbjct: 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-------------------------- 443

Query: 489 MIGEFPNWLLENNTKLEFLYL-------VNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGH 541
            I +FP  L    + L  + L       +  +          +   L  +D+  N     
Sbjct: 444 QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK- 502

Query: 542 IPVEIGDI-LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN------NKLTGEIPDH 594
           +  +     LP LV  ++S N+     P+   N   L+   + N      N+   E P+ 
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561

Query: 595 LAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLY 654
           + + C +L  L + +N ++  +  +I    N+  L ++ N  +      +          
Sbjct: 562 ITL-CPSLTQLQIGSNDIRK-VNEKITP--NISVLDIKDNPNISIDLSYVCPYIEAGMYM 617

Query: 655 LNNNNLS 661
           L  +   
Sbjct: 618 LFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  157 bits (399), Expect = 4e-40
 Identities = 72/610 (11%), Positives = 187/610 (30%), Gaps = 94/610 (15%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDV---KELDSLRDLEELDIGGNKI 58
           L L G   +  V  ++ +L+ L  L L  +  + +  +   K + +    E+        
Sbjct: 86  LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHY 145

Query: 59  DKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFN----NLEVLDMSGNEIDNLVVPQGL 114
            K  V     +     L           +     +        +    N I  +   +  
Sbjct: 146 QKTFVD-YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV--SKA- 201

Query: 115 ERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEE 174
             + RL+KL++  +  +        +     +  + +  +     + D  ++D+L +L +
Sbjct: 202 --VMRLTKLRQFYMGNSP-----FVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTD 253

Query: 175 LDINDNEIDNVEVSRGYRGLRKLKSLDLS------GVGIRDGNKLLQSMGSFPSLNTLHL 228
           +++ +      ++    + L +++ ++++      G  ++D  + L        +  +++
Sbjct: 254 VEVYNCPN-LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

Query: 229 ESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVL 288
             NN   T      L     L  L    + L    L + GS    L +L+++  ++  + 
Sbjct: 313 GYNNLK-TFPVETSLQKMKKLGMLECLYNQLE-GKLPAFGS-EIKLASLNLAYNQITEIP 369

Query: 289 SGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSG---STLGTNSSRILD 345
           +       + +E+L     ++    +      +S+  +  +  S     ++   +   LD
Sbjct: 370 ANF-CGFTEQVENLSFAHNKLKYIPNIFDA--KSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 346 QGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTG------SISSSPLVH 399
                  ++  + + NN +        +  + L  +++  N LT          +    +
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486

Query: 400 LTSIEELRLSNNHF-RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLS 458
              +  + L  N   ++            L   D   N  +    +  + +    LK   
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFR-ATTLPYLVGIDLSYNSFSKFPTQPLNSS---TLKGFG 542

Query: 459 LSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPF 518
           + +                     +    + + E+P                        
Sbjct: 543 IRNQ-------------------RDAQGNRTLREWPEG---------------------- 561

Query: 519 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 578
              I     L  L + +N+ +  +  +   I P++   +I  N       S     I   
Sbjct: 562 ---ITLCPSLTQLQIGSNDIRK-VNEK---ITPNISVLDIKDNPNISIDLSYVCPYIEAG 614

Query: 579 FLDLSNNKLT 588
              L  +K  
Sbjct: 615 MYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  134 bits (338), Expect = 2e-32
 Identities = 65/454 (14%), Positives = 138/454 (30%), Gaps = 68/454 (14%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 60
             +                L  L  + + +      +    L +L +++ +++  N+   
Sbjct: 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNR--- 284

Query: 61  FMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRL 120
                     + L              +      ++++ +  N +    V      L ++
Sbjct: 285 ------GISGEQLKDDWQAL------ADAPVGEKIQIIYIGYNNLKTFPVETS---LQKM 329

Query: 121 SKLKKLDLRGN-LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND 179
            KL  L+   N L     L +      L SL+L++N +   I A        +E L    
Sbjct: 330 KKLGMLECLYNQL--EGKLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAH 386

Query: 180 NEIDNVEVSRGYRGLRKLKSLDLS-----GVGIRDGNKLLQSMGSFPSLNTLHLESNNFT 234
           N++  +      + +  + ++D S      V  ++ + L  +     ++++++L +N  +
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 235 ATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFP 294
                 +     + L  + L  + L      S+     + KN                  
Sbjct: 447 KFP--KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT----------------- 487

Query: 295 HFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHL 354
               L  +D+RF +  L          ++P L  + LS      NS           + L
Sbjct: 488 --YLLTSIDLRFNK--LTKLSDDFRATTLPYLVGIDLSY-----NSFSKFPTQPLNSSTL 538

Query: 355 QELYIDN------NDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRL 408
           +   I N      N      P  +    SL  L +  N +             +I  L +
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI----TPNISVLDI 594

Query: 409 SNNHFR--IPVSLEPLFNHSKLKIFDAKNNEING 440
            +N         + P        +F  K  +I G
Sbjct: 595 KDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRG 628

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.8 bits (231), Expect = 2e-19
 Identities = 25/227 (11%), Positives = 64/227 (28%), Gaps = 13/227 (5%)

Query: 738 GTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLL 797
           G      +    +   +         ++   +++ L+L      G VP  + +L +L++L
Sbjct: 51  GFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVL 110

Query: 798 DLSDNNLHG----LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFE 853
            L  +          P         E           ++ +F    P+      I +   
Sbjct: 111 ALGSHGEKVNERLFGPKGISANMSDEQKQKMRM---HYQKTFVDYDPREDFSDLIKDCIN 167

Query: 854 FTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTF 913
              +  +     R+      +    N +   +   +  LT+++   + ++          
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEA 226

Query: 914 SNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 960
                    +  Y +       +  +L  L    V       K+P +
Sbjct: 227 WEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  239 bits (611), Expect = 5e-68
 Identities = 115/726 (15%), Positives = 212/726 (29%), Gaps = 156/726 (21%)

Query: 248 NLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFA 307
            +  +T     L  +  +   ++  S KNL +S   +  + S   F  F  L+ LD+   
Sbjct: 6   VVPNITYQCMEL--NFYKIPDNLPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLS-- 60

Query: 308 RIALNTSFLQIIGES---MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 364
                     I   +   +  L  L L+G+ +      +       L+ LQ+L     +L
Sbjct: 61  ----RCEIQTIEDGAYQSLSHLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVETNL 112

Query: 365 RGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEPL 422
                + + +  +L+ L+V+ N +          +LT++E L LS+N  +      L  L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 423 FN-HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKE 481
                     D   N +N     +       +L  L+L +N                   
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKE---IRLHKLTLRNN------------------- 210

Query: 482 AELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSH---KRLRFLDVSNNNF 538
                           ++    LE   LV         L        + L  L +     
Sbjct: 211 ------FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 539 QGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC 598
                                ++     I   F  +  +    L +  +           
Sbjct: 265 A-------------------YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--- 302

Query: 599 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNN 658
               + L L N         ++ SL+ L +   +G         S     SL+ L L+ N
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRN 357

Query: 659 NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP 718
            LS                       +G          SL+ LD+S N +     +    
Sbjct: 358 GLS----------------------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 719 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN 778
             ++ +    + L    +   F +  +L+ LD+S+ +   +     +GLS L  L +A N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 779 NLEGEV-PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSI 837
           + +    P     L  L  LDLS   L  L P+ F++                       
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS----------------------- 492

Query: 838 SGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT 897
                                         LS L  L++S N            L  +Q 
Sbjct: 493 ------------------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522

Query: 898 LNLSHNNLTGTIPLTFSNL-RHIESLDLSYNKLSGKIP-RQLVD-LNTLAIFIVAYNNLS 954
           L+ S N++  +      +    +  L+L+ N  +     +  +  +      +V    + 
Sbjct: 523 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 582

Query: 955 GKIPEW 960
              P  
Sbjct: 583 CATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  219 bits (561), Expect = 3e-61
 Identities = 101/641 (15%), Positives = 209/641 (32%), Gaps = 72/641 (11%)

Query: 92  FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 151
             + + LD+S N + +L             +L+ LDL           +   LS L++L 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 152 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 211
           L+ N +Q  +    F  LS+L++L   +  + ++E +     L+ LK L+++   I+   
Sbjct: 83  LTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFK 140

Query: 212 KLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEY--LTLDDSSLHISLLQSIGS 269
            L +   +  +L  L L SN   +      +L     +    L+LD S   ++ +Q    
Sbjct: 141 -LPEYFSNLTNLEHLDLSSNKIQSI--YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 270 IFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYL 329
               L  L++     +  +          LE   +         +  +    ++  L  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 330 SLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLT 389
           ++    L                         +     +       T++    +    + 
Sbjct: 258 TIEEFRLAYL----------------------DYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 390 GSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLT 449
                    +    + L L N  F        L +  +L     K      E++      
Sbjct: 296 RV---KDFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS--- 348

Query: 450 PKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL 509
               L+ L LS N                        +   G          T L++L L
Sbjct: 349 ----LEFLDLSRN-----------------------GLSFKGCCSQSDF-GTTSLKYLDL 380

Query: 510 VNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPS 569
             + +       +   + L  LD  ++N +      +   L +L+Y +IS      +   
Sbjct: 381 SFNGVITMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 570 SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 629
            F  +  L+ L ++ N         +     NL FL LS   L+    +   SL +L+ L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 630 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL-KGLQHIVMPKNHLEGPI 688
            +  N+F           +SL+ L  + N++     + L +    L  + + +N      
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 559

Query: 689 PVEFCR--LDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 727
             +     +   + L +    +  + PS    + +  ++++
Sbjct: 560 EHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  202 bits (517), Expect = 2e-55
 Identities = 130/656 (19%), Positives = 210/656 (32%), Gaps = 110/656 (16%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           LDLS N   +    S      L+ L LS   ++   D     SL  L  L + GN I   
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSL 91

Query: 62  MVS--KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSR 119
            +    GLS L+ L    T      +         L+ L+++ N I +  +P+     S 
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEY---FSN 147

Query: 120 LSKLKKLDLRGNLCNNSILSSVARLSSLT----SLHLSHNILQGSIDAKEFDSLSNLEEL 175
           L+ L+ LDL  N   +   + +  L  +     SL LS N +   I    F  +  L +L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI-RLHKL 205

Query: 176 DINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTA 235
            + +N      +    +GL  L+   L              +G F +   L     +   
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRL-------------VLGEFRNEGNLEKFDKSA-- 250

Query: 236 TLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSI--FPSLKNLSMSGCEVNGVLSGQGF 293
                  L    NL       + L   L   I       ++ + S+    +  V     F
Sbjct: 251 -------LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---F 300

Query: 294 PHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 353
            +    +HL++      +N  F Q     + SLK L+ + +  G   S         L  
Sbjct: 301 SYNFGWQHLEL------VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS------EVDLPS 348

Query: 354 LQELYIDNNDL--RGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 411
           L+ L +  N L  +G        TTSL+ LD+SFN +    S+   + L  +E L   ++
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHS 406

Query: 412 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 471
           + +         +   L   D  +       N   +      L+ L ++ N         
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS--SLEVLKMAGN--------- 455

Query: 472 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFL 531
                                F   +      L FL L                      
Sbjct: 456 ----------------SFQENFLPDIFTELRNLTFLDL---------------------- 477

Query: 532 DVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI 591
             S    +   P      L SL   N+S N         +  +  LQ LD S N +    
Sbjct: 478 --SQCQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534

Query: 592 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS--LRNLRWLLLEGNHFVGEIPQSLS 645
              L     +L FL+L+ N        + F   +++ R LL+E        P    
Sbjct: 535 KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 590

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  189 bits (482), Expect = 6e-51
 Identities = 75/446 (16%), Positives = 142/446 (31%), Gaps = 58/446 (13%)

Query: 532 DVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI 591
                NF   IP    ++  S    ++S N L      SF +   LQ LDLS  ++    
Sbjct: 13  QCMELNFY-KIP---DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 592 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLK 651
                    +L  L L+ N ++         L +L+ L+    +        +    +LK
Sbjct: 69  DGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 652 GLYLNNNNL-SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI----LDISDN 706
            L + +N + S K+P +  NL  L+H+ +  N ++     +   L  + +    LD+S N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 707 NISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS------I 760
            ++   P  F  + + ++ L  N     + +      + L    L               
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 761 PDWIDGLSQLSHLNLAHNNLE---GEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 817
              ++GL  L+        L+    ++      L  +    L    +  +    ++    
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307

Query: 818 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 877
           H    N      P                                     L L +   L+
Sbjct: 308 HLELVNCKFGQFPT------------------------------------LKLKSLKRLT 331

Query: 878 CNKLVGHIPPQIGNLTRIQTLNLSHNNLT--GTIPLTFSNLRHIESLDLSYNKLSGKIPR 935
                G       +L  ++ L+LS N L+  G    +      ++ LDLS+N +   +  
Sbjct: 332 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSS 390

Query: 936 QLVDLNTLAIFIVAYNNLSGKIPEWT 961
             + L  L      ++NL        
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSV 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  127 bits (321), Expect = 2e-30
 Identities = 82/414 (19%), Positives = 130/414 (31%), Gaps = 63/414 (15%)

Query: 1   MLDLSGNAFNNNVLS-SLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKID 59
            L L  N  + NV+   +  L+ L    L         ++++ D                
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA------------- 250

Query: 60  KFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSR 119
                  L  L +L +                   L  LD   ++I +L         + 
Sbjct: 251 -------LEGLCNLTI---------------EEFRLAYLDYYLDDIIDL--------FNC 280

Query: 120 LSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND 179
           L+ +    L         +   +       L L +              L +L+ L    
Sbjct: 281 LTNVSSFSLVSV--TIERVKDFSYNFGWQHLELVNCKFGQFP----TLKLKSLKRLTFTS 334

Query: 180 NEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTT 239
           N+  N         L  L+ LDLS  G+       QS     SL  L L  N      T 
Sbjct: 335 NKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---TM 388

Query: 240 TQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSL 299
           +        LE+L    S+L      S+     +L  L +S        +G  F    SL
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSL 447

Query: 300 EHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 359
           E L M         +FL  I   + +L +L LS   L     ++       L+ LQ L +
Sbjct: 448 EVLKMAGNS--FQENFLPDIFTELRNLTFLDLSQCQL----EQLSPTAFNSLSSLQVLNM 501

Query: 360 DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 413
            +N+      +      SL++LD S N +  S         +S+  L L+ N F
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 97.0 bits (242), Expect = 8e-21
 Identities = 64/286 (22%), Positives = 106/286 (37%), Gaps = 27/286 (9%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGS-IDVKELDSLRDLEELDIGGNKID 59
           +  L+  +       S   L SL  L LS N L       +       L+ LD+  N + 
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 60  KFMVS-KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLS 118
               +  GL +L+ L    +  K   +   F S  NL  LD+S                +
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN----GIFN 442

Query: 119 RLSKLKKLDLRGN-LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDI 177
            LS L+ L + GN    N +      L +LT L LS   L+  +    F+SLS+L+ L++
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNM 501

Query: 178 NDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQS-----MGSFPSLNTLHLESNN 232
           + N   +++    Y+ L  L+ LD S       N ++ S          SL  L+L  N+
Sbjct: 502 SHNNFFSLDTFP-YKCLNSLQVLDYS------LNHIMTSKKQELQHFPSSLAFLNLTQND 554

Query: 233 FTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 278
           F  T      L    +   L ++   +         +     + + 
Sbjct: 555 FACTCEHQSFLQWIKDQRQLLVEVERM-------ECATPSDKQGMP 593

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  231 bits (590), Expect = 3e-65
 Identities = 105/533 (19%), Positives = 189/533 (35%), Gaps = 29/533 (5%)

Query: 296 FKSLEHLDMRFARIA--LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 353
             S E L+  F  +    NT+F       + +L +L L+   +      I +        
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTF-----SRLINLTFLDLTRCQI----YWIHEDTFQSQHR 82

Query: 354 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 413
           L  L +  N L       L+   +L+ L      ++ SI   PL +  ++E L L +NH 
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHI 141

Query: 414 RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFL 473
              + L   F   KLK+ D +NN I+    E  S   +    SL+L+ N  D        
Sbjct: 142 SS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN--DIAGIEPGA 198

Query: 474 YHQHELKEAELSHIKMIGEFPNWLLENN-TKLEFLYLVNDSLAGPFRLPIHSHKR--LRF 530
           +     +       + +      L  +    L      +                  +  
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258

Query: 531 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 590
           +++  + F   I          L   +++   L   +PS    +  L+ L LS NK    
Sbjct: 259 INLQKHYFFN-ISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFEN- 315

Query: 591 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH--FVGEIPQSLSKC 647
           +    A    +L  LS+  N+ +  + +     L NLR L L  +           L   
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 648 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRLDSLQILDISDN 706
           S L+ L L+ N               L+ + +    L+       F  L  L++L++S +
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

Query: 707 NISGSLPSCFYPL-SIKQVHLSKNMLHG--QLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 763
            +  S    F  L +++ ++L  N        K  +      L  L LS+  L+      
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

Query: 764 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 816
              L  ++H++L+HN L       L  L  + L +L+ N++  ++PS     +
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL-NLASNHISIILPSLLPILS 547

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  221 bits (565), Expect = 8e-62
 Identities = 119/643 (18%), Positives = 212/643 (32%), Gaps = 114/643 (17%)

Query: 355 QELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 414
           +    +N  L   +P  L    S   L+ SFN L  +I ++    L ++  L L+     
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIY 70

Query: 415 IPVSLEP--LFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKF 472
               +      +  +L       N +      + S      LK L               
Sbjct: 71  ---WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA--LKHLFFIQTG--------- 116

Query: 473 LYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLD 532
                            I       L N   LE LYL ++ ++          ++L+ LD
Sbjct: 117 -----------------ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159

Query: 533 VSNNNFQGHIPVEIGDILPSL--VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 590
             NN    ++  E    L     +  N++ N +   I     +    Q L+    +    
Sbjct: 160 FQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLV 217

Query: 591 IPDHLAMCCV-NLEFLSLSNNSLKGHIFSRIF---SLRNLRWLLLEGNHFVGEIPQSLSK 646
           I   L    + +L   +  +   +  I   +F      ++  + L+ ++F      +   
Sbjct: 218 IFKGLKNSTIQSLWLGTFEDMDDE-DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276

Query: 647 CSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN 706
            S L+ L L   +LS ++P  L  L  L+ +V+  N  E    +      SL  L I  N
Sbjct: 277 FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335

Query: 707 NISGSLPS-CFYPL-SIKQVHLSKNMLHG-QLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 763
                L + C   L +++++ LS + +           N S L +L+LSYN       + 
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395

Query: 764 IDGLSQLSHLNLAHNNLEG-EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN 822
                QL  L+LA   L+  +       L+ L++L+LS + L       FD         
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG-------- 447

Query: 823 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV 882
                                                        L  L  L+L  N   
Sbjct: 448 ---------------------------------------------LPALQHLNLQGNHFP 462

Query: 883 GHI---PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVD 939
                    +  L R++ L LS  +L+      F++L+ +  +DLS+N+L+      L  
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 940 LNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY---DGNPFLC 979
           L  + + + A N++S  +P         ++        NP  C
Sbjct: 523 LKGIYLNL-ASNHISIILPSL---LPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  214 bits (547), Expect = 2e-59
 Identities = 111/577 (19%), Positives = 199/577 (34%), Gaps = 59/577 (10%)

Query: 353 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 412
             + L    N L        +   +L  LD++  Q+   I          ++ L L+ N 
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANP 92

Query: 413 FRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKF 472
               ++   L     LK        I+        L  +  L+SL L SN+  S+  PK 
Sbjct: 93  LIF-MAETALSGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 473 LYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL-VNDSLAGPFRLPIHSHKRLRFL 531
              +  LK  +  +   I       + +  +   L L +N +               + L
Sbjct: 150 FPTEK-LKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207

Query: 532 DVSNNNFQGHIPVEI-GDILPSLVYFNISMNALDGSIPSSFGNV--IFLQFLDLSNNKLT 588
           +         I   +    + SL          +   P+ F  +  + ++ ++L  +   
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 589 GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCS 648
               +    C   L+ L L+   L   + S +  L  L+ L+L  N F      S S   
Sbjct: 268 NISSNTFH-CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 649 SLKGLYLNNNNLSGKI-PRWLGNLKGLQHIVMPKNHLE--GPIPVEFCRLDSLQILDISD 705
           SL  L +  N    ++    L NL+ L+ + +  + +E      ++   L  LQ L++S 
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 706 NNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 764
           N         F     ++ + L+   L  +  +  F N   L  L+LS++ L+ S     
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

Query: 765 DGLSQLSHLNLAHNNLEGEVPIQ---LCRLNQLQLLDLSDNNLHGLIPSCFDN----TTL 817
           DGL  L HLNL  N+       +   L  L +L++L LS  +L  +    F +      +
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505

Query: 818 HESYNN-NSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 876
             S+N   SS  +       I                                    L+L
Sbjct: 506 DLSHNRLTSSSIEALSHLKGIY-----------------------------------LNL 530

Query: 877 SCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTF 913
           + N +   +P  +  L++ +T+NL  N L  T    +
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY 567

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  202 bits (515), Expect = 3e-55
 Identities = 125/716 (17%), Positives = 217/716 (30%), Gaps = 147/716 (20%)

Query: 92  FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 151
            N+ E L+ S N +  +         SRL  L  LDL           +      L +L 
Sbjct: 32  PNSTECLEFSFNVLPTIQNTT----FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87

Query: 152 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 211
           L+ N L   +          L+ L      I +++        + L+SL L    I    
Sbjct: 88  LTANPLI-FMAETALSGPKALKHLFFIQTGISSID-FIPLHNQKTLESLYLGSNHISSIK 145

Query: 212 KLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF 271
             L        L  L  ++N       + +++ +      L+L+ +   I+ ++      
Sbjct: 146 --LPKGFPTEKLKVLDFQNNAIHYL--SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201

Query: 272 PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSL 331
              ++L+  G +                               F  +   ++ SL   + 
Sbjct: 202 AVFQSLNFGGTQNLL--------------------------VIFKGLKNSTIQSLWLGTF 235

Query: 332 SGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGS 391
                  + S  + +GLC +  ++ + +  +             + L+ LD++   L+  
Sbjct: 236 EDMDD-EDISPAVFEGLCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-E 292

Query: 392 ISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPK 451
           + S  LV L+++++L LS                          N+       S S  P 
Sbjct: 293 LPSG-LVGLSTLKKLVLS-------------------------ANKFENLCQISASNFP- 325

Query: 452 FQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 511
             L  LS+  N                             E     LEN   L  L L  
Sbjct: 326 -SLTHLSIKGN-------------------------TKRLELGTGCLENLENLRELDL-- 357

Query: 512 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSF 571
                       SH  +   D  N   +          L  L   N+S N        +F
Sbjct: 358 ------------SHDDIETSDCCNLQLRN---------LSHLQSLNLSYNEPLSLKTEAF 396

Query: 572 GNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 631
                L+ LDL+  +L  +           L+ L+LS++ L          L  L+ L L
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456

Query: 632 EGNHFVGEIPQ---SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI 688
           +GNHF     Q   SL     L+ L L+  +LS        +LK                
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK---------------- 500

Query: 689 PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT 748
                    +  +D+S N ++ S       L    ++L+ N +   +        S   T
Sbjct: 501 --------MMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISI-ILPSLLPILSQQRT 551

Query: 749 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 804
           ++L  N L+ +       +  L         LE            L+ + LSD  L
Sbjct: 552 INLRQNPLDCT----CSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  200 bits (511), Expect = 9e-55
 Identities = 90/512 (17%), Positives = 163/512 (31%), Gaps = 51/512 (9%)

Query: 466 SVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSH 525
           + +  +    +   K     ++  + E P  L  +    E L    + L           
Sbjct: 1   TTSSDQKCIEKEVNKTYNCENLG-LNEIPGTLPNS---TECLEFSFNVLPTIQNTTFSRL 56

Query: 526 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 585
             L FLD++                  L    ++ N L     ++      L+ L     
Sbjct: 57  INLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115

Query: 586 KLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 645
            ++      L      LE L L +N +      + F    L+ L  + N       + +S
Sbjct: 116 GISSIDFIPLH-NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174

Query: 646 KCSSLKGLYLN-NNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP--VEFCRLDSLQILD 702
                  L LN N N    I     +    Q +          I   ++   + SL +  
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234

Query: 703 ISDNNISGSLPSCF---YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 759
             D +     P+ F     +S++ ++L K+     +   TF   S L  LDL+  +L+  
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-E 292

Query: 760 IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPS-CFDN---- 814
           +P  + GLS L  L L+ N  E    I       L  L +  N     + + C +N    
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 815 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 874
             L  S+++  + D       +                               LS L  L
Sbjct: 353 RELDLSHDDIETSDCCNLQLRN-------------------------------LSHLQSL 381

Query: 875 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLT-FSNLRHIESLDLSYNKLSGKI 933
           +LS N+ +           +++ L+L+   L      + F NL  ++ L+LS++ L    
Sbjct: 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441

Query: 934 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFA 965
            +    L  L    +  N+      + T    
Sbjct: 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  192 bits (491), Expect = 4e-52
 Identities = 115/667 (17%), Positives = 221/667 (33%), Gaps = 84/667 (12%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 60
             +      N  +  +L   +S   L  S N L  +I       L +L  LD+   +I  
Sbjct: 16  TYNCENLGLNE-IPGTL--PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 61  FMVS--KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLS 118
                 +   +L +L L+                  L+ L      I ++        L 
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIP----LH 126

Query: 119 RLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLE--ELD 176
               L+ L L  N  ++  L        L  L   +N +   +  ++  SL       L+
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLN 185

Query: 177 INDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTAT 236
           +N N+I  +E           +SL+  G              +  SL     E  +    
Sbjct: 186 LNGNDIAGIEPGAFD--SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 237 LTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHF 296
                E     ++E + L       ++  +    F  L+ L ++   ++ + S  G    
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLSELPS--GLVGL 300

Query: 297 KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQE 356
            +L+ L +   +     +  QI   + PSL +LS+ G+T       +    L  L +L+E
Sbjct: 301 STLKKLVLSANKF---ENLCQISASNFPSLTHLSIKGNTKRLE---LGTGCLENLENLRE 354

Query: 357 LYIDNNDLRGS--LPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 414
           L + ++D+  S      L N + L+ L++S+N+   S+ +        +E L L+    +
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLK 413

Query: 415 IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLY 474
           +  +  P  N   LK+ +  ++ ++    +     P   L+ L+L  N            
Sbjct: 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA--LQHLNLQGN------------ 459

Query: 475 HQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVS 534
                      H           L+   +LE L L                        S
Sbjct: 460 -----------HFPKGNIQKTNSLQTLGRLEILVL------------------------S 484

Query: 535 NNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDH 594
             +    I       L  + + ++S N L  S   +  ++  +  L+L++N ++  +P  
Sbjct: 485 FCDLS-SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSL 542

Query: 595 LAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLY 654
           L +       ++L  N L     +  F    L W                     L+G+ 
Sbjct: 543 LPI-LSQQRTINLRQNPLDCTCSNIYF----LEWYKENMQKLEDTEDTLCENPPLLRGVR 597

Query: 655 LNNNNLS 661
           L++  LS
Sbjct: 598 LSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.0 bits (229), Expect = 3e-19
 Identities = 31/243 (12%), Positives = 59/243 (24%), Gaps = 54/243 (22%)

Query: 744 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 803
           +S   L+ S+N L          L  L+ L+L    +           ++L  L L+ N 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 804 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 863
           L  +  +                                                     
Sbjct: 93  LIFMAETALSG------------------------------------------------- 103

Query: 864 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 923
                  L  L      +       + N   +++L L  N+++            ++ LD
Sbjct: 104 ----PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159

Query: 924 LSYNKLSGKIPRQLVDLNTLAIFIVAYN-NLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 982
              N +       +  L       +  N N    I       A F   ++ G   L  + 
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219

Query: 983 LPI 985
             +
Sbjct: 220 KGL 222

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  220 bits (563), Expect = 1e-64
 Identities = 75/300 (25%), Positives = 123/300 (41%), Gaps = 33/300 (11%)

Query: 531 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGS--IPSSFGNVIFLQFLDLSN-NKL 587
            D  N  + G +          +   ++S   L     IPSS  N+ +L FL +   N L
Sbjct: 31  TDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 588 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 647
            G IP  +A     L +L +++ ++ G I   +  ++ L  L    N   G +P S+S  
Sbjct: 90  VGPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 648 SSLKGLYLNNNNLSGKIPRWLGNLKGL-QHIVMPKNHLEGPIPVEFCRLDSLQILDISDN 706
            +L G+  + N +SG IP   G+   L   + + +N L G IP  F  L +L  +D+S N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207

Query: 707 NISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG 766
            + G                             F +  +   + L+ N L   +   +  
Sbjct: 208 MLEGDASV------------------------LFGSDKNTQKIHLAKNSLAFDLGK-VGL 242

Query: 767 LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL-HESYNNNS 825
              L+ L+L +N + G +P  L +L  L  L++S NNL G IP   +       +Y NN 
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  200 bits (511), Expect = 1e-57
 Identities = 71/378 (18%), Positives = 124/378 (32%), Gaps = 108/378 (28%)

Query: 639 EIPQSLSKCSSL----KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG--PIPVEF 692
           +I + L   ++L          N    G +         + ++ +   +L    PIP   
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 693 CRLDSLQILDISD-NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDL 751
             L  L  L I   NN+ G +P                              + L  L +
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPP------------------------AIAKLTQLHYLYI 108

Query: 752 SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSC 811
           ++  ++G+IPD++  +  L  L+ ++N L G +P  +  L  L  +    N + G IP  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 812 FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 871
           +                                                    G    L 
Sbjct: 169 Y----------------------------------------------------GSFSKLF 176

Query: 872 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 931
             + +S N+L G IPP   NL  +  ++LS N L G   + F + ++ + + L+ N L+ 
Sbjct: 177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 932 KIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ-----------------------FATFN 968
            +  ++     L    +  N + G +P+   Q                          F+
Sbjct: 236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294

Query: 969 KSSYDGNPFLCGLPLPIC 986
            S+Y  N  LCG PLP C
Sbjct: 295 VSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  200 bits (510), Expect = 2e-57
 Identities = 85/337 (25%), Positives = 131/337 (38%), Gaps = 63/337 (18%)

Query: 580 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG--HIFSRIFSLRNLRWLLLEG-NHF 636
            D  N    G + D        +  L LS  +L     I S + +L  L +L + G N+ 
Sbjct: 31  TDCCNRTWLGVLCDTDTQT-YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 637 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 696
           VG IP +++K + L  LY+ + N+SG IP +L  +K L  +    N L G +P     L 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 697 SLQILDISDNNISGSLPSCFYPLS--IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 754
           +L  +    N ISG++P  +   S     + +S+N L G++   TF N  +L  +DLS N
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANL-NLAFVDLSRN 207

Query: 755 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 814
            L G              ++LA N+L  ++  ++     L  LDL +N ++G +P     
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 815 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 874
                                                                L  L  L
Sbjct: 267 -----------------------------------------------------LKFLHSL 273

Query: 875 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL 911
           ++S N L G I PQ GNL R      ++N      PL
Sbjct: 274 NVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  181 bits (461), Expect = 7e-51
 Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 4/214 (1%)

Query: 502 TKLEFLYLVND-SLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISM 560
             L FLY+    +L GP    I    +L +L +++ N  G IP  +   + +LV  + S 
Sbjct: 76  PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSY 134

Query: 561 NALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRI 620
           NAL G++P S  ++  L  +    N+++G IPD           +++S N L G I    
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

Query: 621 FSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 680
            +L NL ++ L  N   G+         + + ++L  N+L+  + + +G  K L  + + 
Sbjct: 195 ANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLR 252

Query: 681 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 714
            N + G +P    +L  L  L++S NN+ G +P 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  156 bits (398), Expect = 2e-42
 Identities = 74/358 (20%), Positives = 113/358 (31%), Gaps = 83/358 (23%)

Query: 361 NNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLV-HLTSIEELRLSNNHFRIPVSL 419
           N    G L      T  +  LD+S   L         + +L  +  L +           
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG--------- 85

Query: 420 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 479
                           N + G I    ++    QL  L ++                   
Sbjct: 86  ---------------INNLVGPI--PPAIAKLTQLHYLYITHT----------------- 111

Query: 480 KEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQ 539
                    + G  P++ L     L  L    ++L+G     I S   L  +    N   
Sbjct: 112 --------NVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 540 GHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCC 599
           G IP   G          IS N L G IP +F N + L F+DLS N L G+         
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDAS------- 214

Query: 600 VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN 659
                                 S +N + + L  N    ++   +    +L GL L NN 
Sbjct: 215 ------------------VLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNR 255

Query: 660 LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI--SGSLPSC 715
           + G +P+ L  LK L  + +  N+L G IP     L    +   ++N       LP+C
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  123 bits (311), Expect = 5e-31
 Identities = 58/321 (18%), Positives = 116/321 (36%), Gaps = 70/321 (21%)

Query: 295 HFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNS-SRILDQGLCPLAH 353
               + +LD+    +         +  ++P L +L + G     N+    +   +  L  
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGG----INNLVGPIPPAIAKLTQ 102

Query: 354 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 413
           L  LYI + ++ G++P  L+   +L  LD S+N L+G++  S +  L ++  +    N  
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRI 161

Query: 414 --RIPVSLEPLFNHSKLKIF-DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 470
              IP S     + SKL        N + G+I  + +      L  + LS N        
Sbjct: 162 SGAIPDS---YGSFSKLFTSMTISRNRLTGKIPPTFA---NLNLAFVDLSRN-------- 207

Query: 471 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRF 530
                             + G+       ++   + ++L                     
Sbjct: 208 -----------------MLEGDASVLFG-SDKNTQKIHL--------------------- 228

Query: 531 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 590
              + N+    +  ++G    +L   ++  N + G++P     + FL  L++S N L GE
Sbjct: 229 ---AKNSLAFDLG-KVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 591 IPDHLAMCCVNLEFLSLSNNS 611
           IP    +     +  + +NN 
Sbjct: 284 IPQGGNL--QRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 80.7 bits (200), Expect = 2e-16
 Identities = 64/270 (23%), Positives = 97/270 (35%), Gaps = 44/270 (16%)

Query: 2   LDLSGNAFN--NNVLSSLARLSSLRSLYLSD-NRLEGSIDVKELDSLRDLEELDIGGNKI 58
           LDLSG        + SSLA L  L  LY+   N L G I    +  L  L  L I    +
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI-PPAIAKLTQLHYLYITHTNV 113

Query: 59  DKFMVSKG--------LSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVV 110
                  G        +  L +L  S     GT       S  NL  +   GN I +  +
Sbjct: 114 S------GAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRI-SGAI 165

Query: 111 PQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLS 170
           P      S+L     + +  N     I  + A L+ L  + LS N+L+G   +  F S  
Sbjct: 166 PDSYGSFSKLFTS--MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA-SVLFGSDK 221

Query: 171 NLEELDINDN----EIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLL----QSMGSFPS 222
           N +++ +  N    ++  V         + L  LDL        N++     Q +     
Sbjct: 222 NTQKIHLAKNSLAFDLGKVG------LSKNLNGLDLRN------NRIYGTLPQGLTQLKF 269

Query: 223 LNTLHLESNNFTATLTTTQELHNFTNLEYL 252
           L++L++  NN    +     L  F    Y 
Sbjct: 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 79.9 bits (198), Expect = 3e-16
 Identities = 43/235 (18%), Positives = 82/235 (34%), Gaps = 40/235 (17%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 60
            L ++    +  +   L+++ +L +L  S N L G++    + SL +L  +   GN+I  
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRIS- 162

Query: 61  FMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRL 120
             +         L                        + +S N +    +P     L+  
Sbjct: 163 GAIPDSYGSFSKL---------------------FTSMTISRNRLTG-KIPPTFANLN-- 198

Query: 121 SKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 180
             L  +DL  N+             +   +HL+ N L   +   +     NL  LD+ +N
Sbjct: 199 --LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNN 254

Query: 181 EIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL---LQSMGSFPSLNTLHLESNN 232
            I    + +G   L+ L SL++S       N L   +   G+    +     +N 
Sbjct: 255 RIYG-TLPQGLTQLKFLHSLNVS------FNNLCGEIPQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 73.0 bits (180), Expect = 6e-14
 Identities = 50/291 (17%), Positives = 90/291 (30%), Gaps = 67/291 (23%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
            D     +   +  +  +   + +L LS   L     +             +        
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS----------SLAN------ 74

Query: 62  MVSKGLSKLKSLGLSGT-GFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRL 120
                L  L  L + G     G            L  L ++   +    +P  L   S++
Sbjct: 75  -----LPYLNFLYIGGINNLVGPI-PPAIAKLTQLHYLYITHTNVSG-AIPDFL---SQI 124

Query: 121 SKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNL-EELDIND 179
             L  LD   N  + ++  S++ L +L  +    N + G+I    + S S L   + I+ 
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI-PDSYGSFSKLFTSMTISR 183

Query: 180 N--------EIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLL----QSMGSFPSLNTLH 227
           N           N+           L  +DLS       N L        GS  +   +H
Sbjct: 184 NRLTGKIPPTFANL----------NLAFVDLS------RNMLEGDASVLFGSDKNTQKIH 227

Query: 228 LESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 278
           L  N+    L    ++    NL  L L ++ ++       G++   L  L 
Sbjct: 228 LAKNSLAFDLG---KVGLSKNLNGLDLRNNRIY-------GTLPQGLTQLK 268

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  223 bits (571), Expect = 5e-61
 Identities = 75/618 (12%), Positives = 168/618 (27%), Gaps = 83/618 (13%)

Query: 360 DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSL 419
           + +         L N   +  L ++     G +  + +  LT ++ L    +   +   L
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSETVSGRL 365

Query: 420 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 479
                 +     + K+               +  L  L   +   +    P     +  L
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425

Query: 480 KEAELSHIK-MIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNF 538
           K+ ++ ++   I      + +  TKL+ +Y  N           +        +      
Sbjct: 426 KDTQIGNLTNRITFISKAI-QRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQ 479

Query: 539 QGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAM- 597
             +  +   + L  L    +        +P    ++  LQ L+++ N+            
Sbjct: 480 YENEELSWSN-LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538

Query: 598 -------CCVNLEFLSLSNNSLKGHIFSR-IFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 649
                      ++   +  N+L+    S  +  +  L  L    N       ++      
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVK 596

Query: 650 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRLDSLQILDISDNNI 708
           L  L L+ N +      +      ++ +    N L+  P       +  +  +D S N I
Sbjct: 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI 656

Query: 709 SGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLS 768
                +    +                     +   +  T+ LSYN +     +     S
Sbjct: 657 GSEGRNISCSMDD-------------------YKGINASTVTLSYNEIQKFPTELFATGS 697

Query: 769 QLSHLNLAHNNLE-------GEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-----TT 816
            +S + L++N +                    L  +DL  N L  L            + 
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSN 757

Query: 817 LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 876
           +  SYN                             F         + Q +   +    D 
Sbjct: 758 MDVSYNC-------------------------FSSFP---TQPLNSSQLKAFGIRHQRDA 789

Query: 877 SCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ 936
             N+++   P  I     +  L +  N++          L     LD++ N         
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYI---LDIADNPNISIDVTS 846

Query: 937 LVDLNTLAIFIVAYNNLS 954
           +       ++++ Y+   
Sbjct: 847 VCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  221 bits (565), Expect = 3e-60
 Identities = 88/661 (13%), Positives = 176/661 (26%), Gaps = 133/661 (20%)

Query: 348 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 407
           L     +  L +     +G +P  +   T L++L    +  T S        L + +   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL-TPDMSE 377

Query: 408 LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 467
              +  R+      L    +L + D   +     IN +  + P  +   +SL      ++
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQD----AINRNPEMKPIKKDSRISLKDTQIGNL 433

Query: 468 TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 527
           T                     I       ++  TKL+ +Y  N           +    
Sbjct: 434 TN-------------------RITFISKA-IQRLTKLQIIYFANSPFTY-----DNIAVD 468

Query: 528 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 587
               +        +  +   + L  L    +        +P    ++  LQ L+++ N+ 
Sbjct: 469 WEDANSDYAKQYENEELSWSN-LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527

Query: 588 TGEIPDHLAM--------CCVNLEFLSLSNNSLKGHIFSR-IFSLRNLRWLLLEGNHFVG 638
                                 ++   +  N+L+    S  +  +  L  L    N    
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-- 585

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRLDS 697
              ++      L  L L+ N +      +      ++ +    N L+  P       +  
Sbjct: 586 RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645

Query: 698 LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 757
           +  +D S N I     +    +                     +   +  T+ LSYN + 
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDD-------------------YKGINASTVTLSYNEIQ 686

Query: 758 GSIPDWIDGLSQLSHLNLAHNNLE-------GEVPIQLCRLNQLQLLDLSDNNLHGLIPS 810
               +     S +S + L++N +                    L  +DL  N L  L   
Sbjct: 687 KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746

Query: 811 CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSL 870
               T                                                    L  
Sbjct: 747 FRATT----------------------------------------------------LPY 754

Query: 871 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH------NNLTGTIPLTFSNLRHIESLDL 924
           L+ +D+S N      P Q  N ++++   + H      N +    P   +    +  L +
Sbjct: 755 LSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 925 SYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSS--YDGNPFLCGLP 982
             N +  K+  +L     L I  +A N            +         YD    + G  
Sbjct: 814 GSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870

Query: 983 L 983
            
Sbjct: 871 A 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  201 bits (513), Expect = 2e-53
 Identities = 90/634 (14%), Positives = 169/634 (26%), Gaps = 110/634 (17%)

Query: 131 NLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 190
           ++  +     +     +T L L+    +G +       L+ L+ L    +         G
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV-PDAIGQLTELKVLSFGTHSETVSGRLFG 367

Query: 191 YRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQ-ELHNFTNL 249
              L    S +          K+   +     LN   L  +           +  +  +L
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKM--FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425

Query: 250 EYLTLDDSSLHISLL-QSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFAR 308
           +   + + +  I+ + ++I      L+ +  +                 +++  D     
Sbjct: 426 KDTQIGNLTNRITFISKAIQR-LTKLQIIYFANSPFTYDN--------IAVDWEDANSDY 476

Query: 309 IALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRG-- 366
                +       ++  L  + L        +   L   L  L  LQ L I  N      
Sbjct: 477 AKQYENEELSWS-NLKDLTDVELY----NCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 367 -------SLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSL 419
                   L         ++I  + +N L    +S+ L  +  +  L   +N  R   + 
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAF 591

Query: 420 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 479
                                             L  L L  N                 
Sbjct: 592 GTNVK-----------------------------LTDLKLDYNQ---------------- 606

Query: 480 KEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAG-PFRLPIHSHKRLRFLDVSNNNF 538
                     I E P        ++E L   ++ L   P      S   +  +D S N  
Sbjct: 607 ----------IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI 656

Query: 539 QGHIPVEIGDILP-----SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPD 593
                  I   +      +     +S N +       F     +  + LSNN +T  IP+
Sbjct: 657 GS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPE 714

Query: 594 HLAMC-------CVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLS 645
           +              L  + L  N L         + L  L  + +  N F    P    
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPL 773

Query: 646 KCSSLKGLYL------NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 699
             S LK   +        N +  + P  +     L  + +  N +   +  +      L 
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLY 830

Query: 700 ILDISDNNI-SGSLPSCFYPLSIKQVHLSKNMLH 732
           ILDI+DN   S  + S    +      L  +   
Sbjct: 831 ILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  154 bits (391), Expect = 2e-38
 Identities = 60/427 (14%), Positives = 113/427 (26%), Gaps = 67/427 (15%)

Query: 556 FNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH 615
           FN  ++           N   +  L L+     G +PD +      L+ LS   +S    
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETVS 362

Query: 616 IFSRIFSLRNLRWLLLEGNHFVGEIPQSLS------KCSSLKGLYLNNNNLSGKIPRWLG 669
                             +       +           S L    +N N     I +   
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 670 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 729
                  I    N +   I     RL  LQI+  +++  +                    
Sbjct: 423 ISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNI---------------- 465

Query: 730 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 789
                               +  Y     +       L  L+ + L +     ++P  L 
Sbjct: 466 -------------AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512

Query: 790 RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL 849
            L +LQ L+++ N          D T L +  +                          +
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK----------------------I 550

Query: 850 EIFEFTT---KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT 906
           +IF       +    +   + +  L  LD   NK+        G   ++  L L +N + 
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE 608

Query: 907 GTIPLTFSNLRHIESLDLSYNKLSGKIPR--QLVDLNTLAIFIVAYNNLSGKIPEWTAQF 964
                  +    +E L  S+NKL   IP       +  +     +YN +  +    +   
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 965 ATFNKSS 971
             +   +
Sbjct: 668 DDYKGIN 674

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  153 bits (388), Expect = 4e-38
 Identities = 79/508 (15%), Positives = 156/508 (30%), Gaps = 66/508 (12%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L L+G      V  ++ +L+ L+ L    +    S  +   + L   +  +   ++I   
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT-PDMSEERKHRIRMH 386

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNL-----VVPQGLER 116
                L   + L LS           E         + +   +I NL      + + ++R
Sbjct: 387 YKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQR 446

Query: 117 LSRLSKL----------------KKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGS 160
           L++L  +                +  +        +   S + L  LT + L +      
Sbjct: 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506

Query: 161 IDAKEFDSLSNLEELDINDNEIDNVEVSRGYR--------GLRKLKSLDLSGVGIRDGNK 212
           +       L  L+ L+I  N   +    +              K++   +        N 
Sbjct: 507 LP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG------YNN 559

Query: 213 LLQ-----SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSI 267
           L +     S+     L  L    N     +   +       L  L LD + +   + +  
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNK----VRHLEAFGTNVKLTDLKLDYNQIE-EIPEDF 614

Query: 268 GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLK 327
            +    ++ L  S  ++  + +         +  +D  + +I    S  + I  SM   K
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI---GSEGRNISCSMDDYK 671

Query: 328 YLSLSGSTLGTNS-SRILDQGLCPLAHLQELYIDNNDLR-------GSLPWCLANTTSLR 379
            ++ S  TL  N   +   +     + +  + + NN +                NT  L 
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731

Query: 380 ILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEI 438
            +D+ FN+LT          L  +  + +S N F   P       N S+LK F  ++   
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQ---PLNSSQLKAFGIRHQRD 788

Query: 439 NGEINESHSLTPKF----QLKSLSLSSN 462
                              L  L + SN
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSN 816

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  139 bits (351), Expect = 1e-33
 Identities = 67/443 (15%), Positives = 137/443 (30%), Gaps = 61/443 (13%)

Query: 1   MLDLSGNAF-------------------NNNVLSSLARLSSLRSLYLSDNRLEGSIDVKE 41
           ++  + + F                     N   S + L  L  + L +      +    
Sbjct: 452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DF 510

Query: 42  LDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMS 101
           L  L +L+ L+I  N+               +  +      T    + D+   +++  M 
Sbjct: 511 LYDLPELQSLNIACNRG--------------ISAAQLKADWTRLADDEDTGPKIQIFYMG 556

Query: 102 GNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSI 161
            N ++          L ++ KL  LD   N      L +      LT L L +N ++  I
Sbjct: 557 YNNLEEFPASAS---LQKMVKLGLLDCVHN--KVRHLEAFGTNVKLTDLKLDYNQIE-EI 610

Query: 162 DAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG---VGIRDGNKLLQSMG 218
                     +E L  + N++  +      + +  + S+D S                  
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 219 SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD---SSLHISLLQSIGSIF---P 272
              + +T+ L  N      T        + +  + L +   +S+  + L+     +    
Sbjct: 671 KGINASTVTLSYNEIQKFPTEL--FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728

Query: 273 SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLS 332
            L  + +   ++  +           L ++D+ +      +SF      +   LK   + 
Sbjct: 729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF---SSFPTQPL-NSSQLKAFGIR 784

Query: 333 G--STLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLT- 389
                 G    R    G+     L +L I +ND+R  +   L  T  L ILD++ N    
Sbjct: 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNIS 841

Query: 390 GSISSSPLVHLTSIEELRLSNNH 412
             ++S        +  L      
Sbjct: 842 IDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  122 bits (308), Expect = 2e-28
 Identities = 47/397 (11%), Positives = 110/397 (27%), Gaps = 80/397 (20%)

Query: 580 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 639
           + +   +    I D+ A+  +  E L   N        +      N      E + +  +
Sbjct: 257 VPIQLKETAEYIKDYKALKAI-WEALDGKNWRYYSGTINNTIHSLNWN-FNKELDMWGDQ 314

Query: 640 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 699
               L     + GL L      G++P                            +L  L+
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPD------------------------AIGQLTELK 350

Query: 700 ILDISDNNISGSLPSCF-YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 758
           +L    ++ + S        L+       K+ +    K+        L   DL  + +N 
Sbjct: 351 VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410

Query: 759 SIPDWIDGLSQLSHLNLAHNNLEG------EVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 812
           +    +  + + S ++L    +         +   + RL +LQ++  +++       +  
Sbjct: 411 NPE--MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD 468

Query: 813 DNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 872
                 +      + +  +                                    L  L 
Sbjct: 469 WEDANSDYAKQYENEELSWSN----------------------------------LKDLT 494

Query: 873 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG---------TIPLTFSNLRHIESLD 923
            ++L     +  +P  + +L  +Q+LN++ N              +         I+   
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 924 LSYNKLSG-KIPRQLVDLNTLAIFIVAYNNLSGKIPE 959
           + YN L        L  +  L +    +N +   +  
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA 590

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  210 bits (537), Expect = 4e-58
 Identities = 113/578 (19%), Positives = 197/578 (34%), Gaps = 55/578 (9%)

Query: 248 NLEYLTLDDSSLHISLLQSI-GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 306
            +  +T          L  +   I  S KN+ +S   +  + S   F +F  L+ LD+  
Sbjct: 10  VVPNITYQCMDQK---LSKVPDDIPSSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLS- 64

Query: 307 ARIALNTSFLQIIGES---MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNND 363
                      I  ++   +  L  L L+G+ +              L  L+ L      
Sbjct: 65  -----RCEIETIEDKAWHGLHHLSNLILTGNPI----QSFSPGSFSGLTSLENLVAVETK 115

Query: 364 LRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEP 421
           L     + +    +L+ L+V+ N +      +   +LT++  + LS N+ +      L+ 
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 422 LFN-HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELK 480
           L          D   N I+   +++       +L  L+L  N+  S      L +   L 
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQG---IKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 481 EAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQG 540
              L   +   E    + E +       +                  +    ++  N   
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDV-----------------TIDEFRLTYTNDFS 275

Query: 541 HIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV 600
              V+    L ++   +++  ++              Q L +   +L       L     
Sbjct: 276 DDIVKFHC-LANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLP---- 328

Query: 601 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH--FVGEIPQSLSKCSSLKGLYLNNN 658
            L+ L+L+ N  KG I  +  +L +L +L L  N   F G    S    +SL+ L L+ N
Sbjct: 329 FLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

Query: 659 NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFY 717
                +      L+ LQH+    + L+       F  L+ L  LDIS  N        F 
Sbjct: 387 GAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445

Query: 718 PL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 776
            L S+  + ++ N          F N ++L  LDLS   L        D L +L  LN++
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505

Query: 777 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 814
           HNNL         +L  L  LD S N +          
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  200 bits (511), Expect = 1e-54
 Identities = 106/621 (17%), Positives = 198/621 (31%), Gaps = 112/621 (18%)

Query: 352 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 411
           +  + + +  N L+    +  +N + L+ LD+S  ++      +    L  +  L L+ N
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA-WHGLHHLSNLILTGN 90

Query: 412 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 471
             +   S       + L+   A   ++    +    +     LK L+++ N+        
Sbjct: 91  PIQS-FSPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNF-------- 139

Query: 472 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFL 531
                       +   K+   F N                                L  +
Sbjct: 140 ------------IHSCKLPAYFSNL-----------------------------TNLVHV 158

Query: 532 DVSNNNFQGHIPVEIG---DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 588
           D+S N  Q     ++    +     +  ++S+N +D     +F  +  L  L L  N  +
Sbjct: 159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNS 217

Query: 589 GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR--------NLRWLLLEGNHFVGEI 640
             I          L    L     K      IF            +    L   +   + 
Sbjct: 218 SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD 277

Query: 641 PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI 700
                  +++  + L   ++       +      Q + + +  L+         L  L+ 
Sbjct: 278 IVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKS 332

Query: 701 LDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN--CSSLVTLDLSYNYLNG 758
           L ++ N  S S      P S+  + LS+N L       ++ +   +SL  LDLS+N    
Sbjct: 333 LTLTMNKGSISFKKVALP-SLSYLDLSRNALSF-SGCCSYSDLGTNSLRHLDLSFNGAI- 389

Query: 759 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGLIPSCFDN--- 814
            +     GL +L HL+  H+ L+          L +L  LD+S  N        F     
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 815 -TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 873
             TL  + N+                           +F                + L  
Sbjct: 450 LNTLKMAGNSFKDNTLS-------------------NVF-------------ANTTNLTF 477

Query: 874 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 933
           LDLS  +L          L R+Q LN+SHNNL       ++ L  + +LD S+N++    
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537

Query: 934 PRQLVDLNTLAIFIVAYNNLS 954
                   +LA F +  N+++
Sbjct: 538 GILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  194 bits (494), Expect = 2e-52
 Identities = 100/596 (16%), Positives = 180/596 (30%), Gaps = 68/596 (11%)

Query: 90  DSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTS 149
           D  ++ + +D+S N +  L         S  S+L+ LDL           +   L  L++
Sbjct: 29  DIPSSTKNIDLSFNPLKILKSYS----FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN 84

Query: 150 LHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD 209
           L L+ N +Q S     F  L++LE L   + ++ ++E S     L  LK L+++   I  
Sbjct: 85  LILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLE-SFPIGQLITLKKLNVAHNFIHS 142

Query: 210 GNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGS 269
              L     +  +L  + L  N          +         L+LD S   I  +Q    
Sbjct: 143 CK-LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201

Query: 270 IFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYL 329
               L  L++ G   +  +      +   L    +         +        M  L  +
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 330 SLSGSTLGTNSSRILDQG-LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQL 388
           ++    L   +    D      LA++  + +    +       +      + L +   QL
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQL 319

Query: 389 TGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSL 448
                  P + L  ++ L L+ N   I      L +                        
Sbjct: 320 K----QFPTLDLPFLKSLTLTMNKGSISFKKVALPS------------------------ 351

Query: 449 TPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLY 508
                L  L LS N                        +   G      L     L  L 
Sbjct: 352 -----LSYLDLSRN-----------------------ALSFSGCCSYSDL-GTNSLRHLD 382

Query: 509 LVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIP 568
           L  +             + L+ LD  ++  +          L  L+Y +IS         
Sbjct: 383 LSFNGAIIMSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441

Query: 569 SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 628
             F  +  L  L ++ N        ++     NL FL LS   L+   +    +L  L+ 
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501

Query: 629 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 684
           L +  N+ +       ++  SL  L  + N +           K L    +  N +
Sbjct: 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  190 bits (485), Expect = 2e-51
 Identities = 111/597 (18%), Positives = 193/597 (32%), Gaps = 85/597 (14%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           +DLS N        S +  S L+ L LS   +E +I+ K    L  L  L + GN I  F
Sbjct: 37  IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSF 95

Query: 62  MVS--KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSR 119
                 GL+ L++L    T      +         L+ L+++ N I +  +P      S 
Sbjct: 96  SPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLP---AYFSN 151

Query: 120 LSKLKKLDLRGN----LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEEL 175
           L+ L  +DL  N    +  N +           SL +S N +   I  + F  +  L EL
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHEL 209

Query: 176 DINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL----LQSMGSFPSLNTLHLESN 231
            +  N   +  +    + L  L    L     +D   L       M     +        
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 232 NFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQ 291
                     + H   N+  ++L  + + I  L+         ++LS+  C+    L   
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSL--AGVSIKYLED-VPKHFKWQSLSIIRCQ----LKQF 322

Query: 292 GFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPL 351
                  L+ L +   + +++   +     ++PSL YL LS + L  +            
Sbjct: 323 PTLDLPFLKSLTLTMNKGSISFKKV-----ALPSLSYLDLSRNALSFSGCCSYSDLGTN- 376

Query: 352 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 411
             L+ L +  N     +         L+ LD   + L      S  + L  +  L +S  
Sbjct: 377 -SLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 412 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 471
           + +                           I+          L +L ++ N         
Sbjct: 435 NTK---------------------------IDFDGIFLGLTSLNTLKMAGN--------- 458

Query: 472 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFL 531
                                  + +  N T L FL L    L         +  RL+ L
Sbjct: 459 ----------------SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502

Query: 532 DVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 588
           ++S+NN    +     + L SL   + S N ++ S          L F +L+NN + 
Sbjct: 503 NMSHNNLL-FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  182 bits (465), Expect = 1e-48
 Identities = 80/445 (17%), Positives = 145/445 (32%), Gaps = 34/445 (7%)

Query: 531 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 590
               +      +P    DI  S    ++S N L      SF N   LQ+LDLS  ++   
Sbjct: 16  YQCMDQKLS-KVP---DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 591 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSL 650
                     +L  L L+ N ++         L +L  L+             + +  +L
Sbjct: 72  EDKAWH-GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130

Query: 651 KGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRL----DSLQILDISD 705
           K L + +N +   K+P +  NL  L H+ +  N+++     +   L         LD+S 
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 706 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI----- 760
           N I       F  + + ++ L  N     + +    N + L    L              
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250

Query: 761 -PDWIDGLSQLS--HLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 817
            P  ++GL  ++     L + N   +  ++   L  +  + L+  ++  L          
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQ 310

Query: 818 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 877
             S         P                  L+    T    + +++   L  L+ LDLS
Sbjct: 311 SLSIIRCQLKQFPTLDLPF------------LKSLTLTMNKGSISFKKVALPSLSYLDLS 358

Query: 878 CNKL--VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 935
            N L   G           ++ L+LS N     +   F  L  ++ LD  ++ L      
Sbjct: 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEF 417

Query: 936 Q-LVDLNTLAIFIVAYNNLSGKIPE 959
              + L  L    ++Y N       
Sbjct: 418 SAFLSLEKLLYLDISYTNTKIDFDG 442

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  163 bits (415), Expect = 2e-42
 Identities = 79/491 (16%), Positives = 142/491 (28%), Gaps = 64/491 (13%)

Query: 490 IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 549
           +    ++   N ++L++L L    +        H    L  L ++ N  Q          
Sbjct: 44  LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSFSG 102

Query: 550 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 609
           L SL         L        G +I L+ L++++N +             NL  + LS 
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162

Query: 610 NSLKGHIFSRIFSLRNLRWLLLEGNH---FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR 666
           N ++    + +  LR    + L  +     +  I     +   L  L L  N  S  I +
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK 222

Query: 667 W-LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ--------ILDISDNNISGSLPSCFY 717
             L NL GL    +     +    +E      ++           ++  N        F+
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 718 PLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 776
            L+ +  + L+   +   L++          +L +    L    P     L  L  L L 
Sbjct: 283 CLANVSAMSLAGVSIK-YLEDVPK--HFKWQSLSIIRCQLK-QFPTL--DLPFLKSLTLT 336

Query: 777 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN------TTLHESYNNNSSPDKP 830
            N     +  +   L  L  LDLS N L       + +        L  S+N        
Sbjct: 337 MNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN 394

Query: 831 FKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ-I 889
           F                                    L  L  LD   + L         
Sbjct: 395 FMG----------------------------------LEELQHLDFQHSTLKRVTEFSAF 420

Query: 890 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ-LVDLNTLAIFIV 948
            +L ++  L++S+ N        F  L  + +L ++ N            +   L    +
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

Query: 949 AYNNLSGKIPE 959
           +   L      
Sbjct: 481 SKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  133 bits (336), Expect = 2e-32
 Identities = 68/396 (17%), Positives = 121/396 (30%), Gaps = 81/396 (20%)

Query: 565 GSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR 624
           GS+      V  +      + KL+ ++PD +     + + + LS N LK        +  
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFS 56

Query: 625 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 684
            L+WL L          ++      L  L L  N +    P     L  L+++V  +  L
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 685 EGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCS 744
                    +L +L+ L+++ N I                               F N +
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLP-----------------------AYFSNLT 153

Query: 745 SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 804
           +LV +DLSYNY+     + +  L +   +                       LD+S N +
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQV--------------------NLSLDMSLNPI 193

Query: 805 HGLIPSCFDNTTLHE---SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 861
             +    F    LHE     N NSS                        I +   +N+A 
Sbjct: 194 DFIQDQAFQGIKLHELTLRGNFNSS-----------------------NIMKTCLQNLA- 229

Query: 862 AYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT--LNLSHNNLTGTIPLTFSNLRHI 919
                V  L+ G       L    P  +  L  +      L++ N      + F  L ++
Sbjct: 230 --GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287

Query: 920 ESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 955
            ++ L+   +       +          +    L  
Sbjct: 288 SAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQ 321

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.5 bits (225), Expect = 8e-19
 Identities = 51/260 (19%), Positives = 78/260 (30%), Gaps = 49/260 (18%)

Query: 710 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 769
           GSL  C   +           L  ++ +      SS   +DLS+N L           S+
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 770 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNN-N 824
           L  L+L+   +E         L+ L  L L+ N +    P  F        L        
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 825 SSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG- 883
           S    P                                     L  L  L+++ N +   
Sbjct: 118 SLESFPIGQ----------------------------------LITLKKLNVAHNFIHSC 143

Query: 884 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRH----IESLDLSYNKLSGKIPRQLVD 939
            +P    NLT +  ++LS+N +          LR       SLD+S N +   I  Q   
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQ 202

Query: 940 LNTLAIFIVAYNNLSGKIPE 959
              L    +  N  S  I +
Sbjct: 203 GIKLHELTLRGNFNSSNIMK 222

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.0 bits (177), Expect = 6e-13
 Identities = 27/159 (16%), Positives = 56/159 (35%), Gaps = 11/159 (6%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           LD+S      +       L+SL +L ++ N  + +       +  +L  LD+   ++++ 
Sbjct: 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488

Query: 62  MVS--KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSR 119
                  L +L+ L +S        D   ++   +L  LD S N I+       L     
Sbjct: 489 SWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETS--KGIL--QHF 543

Query: 120 LSKLKKLDLRGN----LCNNSILSSVARLSSLTSLHLSH 154
              L   +L  N    +C +       +      +++  
Sbjct: 544 PKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQ 582

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  185 bits (472), Expect = 2e-48
 Identities = 130/709 (18%), Positives = 227/709 (32%), Gaps = 98/709 (13%)

Query: 351  LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 410
            L   + L +  N +R            L++L++       +I      +L ++  L L +
Sbjct: 23   LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 411  NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 470
            +     +  +       L         ++  + +         L  L LS N   S+   
Sbjct: 83   SKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 471  KFLYHQHELKEAELSHIKMIGEFPNWLLEN--NTKLEFLYL------VNDSLAGPFRLPI 522
                  + LK  + S  + I       LE      L F  L         S+     +  
Sbjct: 142  PSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 523  HSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDL 582
              +  L  LDVS N +             ++       NA+  S   S      +     
Sbjct: 201  FRNMVLEILDVSGNGW-------------TVDITGNFSNAISKSQAFSLILAHHIMGAGF 247

Query: 583  SNNKLTGEIPDHLA-MCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEI 640
              + +     +  A +   ++  L LS+  +   + SR+F  L++L+ L L  N      
Sbjct: 248  GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIA 306

Query: 641  PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI 700
             ++     +L+ L L+ N L          L  + +I + KNH+       F  L+ LQ 
Sbjct: 307  DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366

Query: 701  LDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG-S 759
            LD+ DN ++    +  +  SI  + LS N L   L +       +   + LS N L    
Sbjct: 367  LDLRDNALT----TIHFIPSIPDIFLSGNKLV-TLPKINL----TANLIHLSENRLENLD 417

Query: 760  IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNNLHGLIPSCFDNTTLH 818
            I  ++  +  L  L L  N        Q       L+ L L +N L     +        
Sbjct: 418  ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477

Query: 819  ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 878
                                                             LS L  L L+ 
Sbjct: 478  G------------------------------------------------LSHLQVLYLNH 489

Query: 879  NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV 938
            N L    P    +LT ++ L+L+ N LT           ++E LD+S N+L    P   V
Sbjct: 490  NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILDISRNQLLAPNPDVFV 547

Query: 939  DLNTLAIFIVAYNNLSGKIP-EWTAQFATFNKSSYDGNP--FLCGLPLPICRSLATMSEA 995
             L+      + +N    +        +      +  G P    C  P     S + +S  
Sbjct: 548  SLSV---LDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPD----SFSGVSLF 600

Query: 996  STSNEG-DDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYL 1043
            S S EG D+  +     F  F +  V +   ++ +L V  +    ++  
Sbjct: 601  SLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  180 bits (459), Expect = 6e-47
 Identities = 114/648 (17%), Positives = 204/648 (31%), Gaps = 62/648 (9%)

Query: 89  FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-ARLSSL 147
               N  E L +S N I  +           L +L+ L+L       +I       L +L
Sbjct: 20  PQVLNTTERLLLSFNYIRTV----TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNL 75

Query: 148 TSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY-RGLRKLKSLDLSGVG 206
             L L  + +   +    F  L +L EL +    + +  +  GY R L+ L  LDLS   
Sbjct: 76  RILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134

Query: 207 IRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQS 266
           IR    L  S G   SL ++   SN          EL             ++  +    S
Sbjct: 135 IRSLY-LHPSFGKLNSLKSIDFSSNQIFL--VCEHELEPLQGKTLSFFSLAANSLYSRVS 191

Query: 267 IGSI-------FPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQII 319
           +             L+ L +SG      ++G         +   +               
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI-------------- 237

Query: 320 GESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLR 379
                 +         +          GL     ++ L + +  +             L+
Sbjct: 238 --LAHHIMGAGFGFHNIKDPDQNTF-AGLARS-SVRHLDLSHGFVFSLNSRVFETLKDLK 293

Query: 380 ILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEIN 439
           +L++++N++   I+      L +++ L LS N     +     +   K+   D + N I 
Sbjct: 294 VLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGE-LYSSNFYGLPKVAYIDLQKNHIA 351

Query: 440 GEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLE 499
             I +  +     +L++L L  N   ++T   F+    ++    LS  K++      L  
Sbjct: 352 --IIQDQTFKFLEKLQTLDLRDN---ALTTIHFIPSIPDI---FLSGNKLVTLPKINLTA 403

Query: 500 NNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNIS 559
           N   L    L N  +             L+ L ++ N F      +     PSL    + 
Sbjct: 404 NLIHLSENRLENLDILYFLL----RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459

Query: 560 MNALDGSIPSSFGNVIF-----LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG 614
            N L  +  +     +F     LQ L L++N L   +P  +      L  LSL++N L  
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTV 518

Query: 615 HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP-RWLGNLKG 673
              S      NL  L +  N  +   P       SL  L + +N    +       N   
Sbjct: 519 --LSHNDLPANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWLN 573

Query: 674 LQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSI 721
             ++ +          V       + +  +S               S+
Sbjct: 574 HTNVTIAGPP-ADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSL 620

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  173 bits (439), Expect = 2e-44
 Identities = 117/653 (17%), Positives = 222/653 (33%), Gaps = 81/653 (12%)

Query: 20  LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTG 79
           L++   L LS N +  ++       L  L+ L++G                         
Sbjct: 23  LNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYT--------------------- 60

Query: 80  FKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILS 139
              T D   F +  NL +LD+  ++I  L           L  L +L L     ++++L 
Sbjct: 61  -PLTIDKEAFRNLPNLRILDLGSSKIYFL--HPDA--FQGLFHLFELRLYFCGLSDAVLK 115

Query: 140 SVA--RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVS--RGYRGLR 195
                 L +LT L LS N ++       F  L++L+ +D + N+I  V        +G  
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK- 174

Query: 196 KLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLD 255
            L    L+   +     +            + LE  + +    T     NF+N    +  
Sbjct: 175 TLSFFSLAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233

Query: 256 DSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSF 315
            S +    +   G  F ++K+            +G       S+ HLD+    +    S 
Sbjct: 234 FSLILAHHIMGAGFGFHNIKDPD------QNTFAGLARS---SVRHLDLSHGFV---FSL 281

Query: 316 LQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANT 375
              + E++  LK L+L+ + +    ++I D+    L +LQ L +  N L           
Sbjct: 282 NSRVFETLKDLKVLNLAYNKI----NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337

Query: 376 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 435
             +  +D+  N +   I       L  ++ L L +N      +L  +     +       
Sbjct: 338 PKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDN------ALTTIHFIPSIPDIFLSG 390

Query: 436 NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 495
           N++      +           + LS N  +++    FL     L+   L+  +      +
Sbjct: 391 NKLVTLPKIN------LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444

Query: 496 WLLENNTKLEFLYLVNDSLAGPFRLPIHSH-----KRLRFLDVSNNNFQGHIPVEIGDIL 550
                N  LE L+L  + L   +   +          L+ L +++N     +P  +   L
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHL 503

Query: 551 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 610
            +L   +++ N L     +       L+ LD+S N+L    PD       +L  L +++N
Sbjct: 504 TALRGLSLNSNRLTVLSHNDLPAN--LEILDISRNQLLAPNPDVFV----SLSVLDITHN 557

Query: 611 SLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSL--SKCSSLKGLYLNNNNLS 661
                       L      L   N  +   P  +      S  G+ L + +  
Sbjct: 558 KFICEC-----ELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE 605

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  158 bits (402), Expect = 6e-40
 Identities = 118/663 (17%), Positives = 231/663 (34%), Gaps = 89/663 (13%)

Query: 166 FDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSM--GSF--- 220
              L+  E L ++ N I  V  +  +  L +L+ L+L             ++   +F   
Sbjct: 20  PQVLNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELG------SQYTPLTIDKEAFRNL 72

Query: 221 PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF---PSLKNL 277
           P+L  L L S+                +L  L L    L  ++L+     F    +L  L
Sbjct: 73  PNLRILDLGSSKIYFLHPDA--FQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRL 128

Query: 278 SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARI-ALNTSFLQIIGESMPSLKYLSLSGSTL 336
            +S  ++  +     F    SL+ +D    +I  +    L+ +     +L + SL+ ++L
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL--QGKTLSFFSLAANSL 186

Query: 337 GTNSSRILDQGLCPLA--HLQELYIDNNDLRGSLPWCLANTTS------------LRILD 382
            +  S    + + P     L+ L +  N     +    +N  S            +    
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246

Query: 383 VSFNQLTGSISSSPLVHL--TSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEING 440
             F+ +      +    L  +S+  L LS+      ++         LK+ +   N+IN 
Sbjct: 247 FGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINK 304

Query: 441 EINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLEN 500
                 +      L+ L+LS N                           +GE  +     
Sbjct: 305 --IADEAFYGLDNLQVLNLSYNL--------------------------LGELYSSNFYG 336

Query: 501 NTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISM 560
             K+ ++ L  + +A          ++L+ LD+ +N     I       +PS+    +S 
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIH-----FIPSIPDIFLSG 390

Query: 561 NALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRI 620
           N     + +     +    + LS N+L      +  +   +L+ L L+ N        + 
Sbjct: 391 N----KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446

Query: 621 FS-LRNLRWLLLEGNHFVGEIPQSLSK-----CSSLKGLYLNNNNLSGKIPRWLGNLKGL 674
            S   +L  L L  N         L        S L+ LYLN+N L+   P    +L  L
Sbjct: 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506

Query: 675 QHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQ 734
           + + +  N L      +     +L+ILDIS N +    P  F  L    + ++ N    +
Sbjct: 507 RGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSL--SVLDITHNKFICE 562

Query: 735 LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQL 794
            +  TF N  +   + ++    +     + D  S +S  +L+    + E  ++  + +  
Sbjct: 563 CELSTFINWLNHTNVTIAGPPAD-IYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLF 621

Query: 795 QLL 797
            + 
Sbjct: 622 IVC 624

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  140 bits (354), Expect = 4e-34
 Identities = 88/446 (19%), Positives = 157/446 (35%), Gaps = 52/446 (11%)

Query: 2   LDLSGNAFNNNVLSSLARLS--SLRSLYLSDNRLEGSIDVKELDSL-----RDLEELDIG 54
           +D S N         L  L   +L    L+ N L   + V     +       LE LD+ 
Sbjct: 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212

Query: 55  GNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGL 114
           GN     +     + +                      +++       + I +    Q  
Sbjct: 213 GNGWTVDITGNFSNAISKS-----------QAFSLILAHHIMGAGFGFHNIKDP--DQNT 259

Query: 115 ERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEE 174
                 S ++ LDL      +        L  L  L+L++N +   I  + F  L NL+ 
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQV 318

Query: 175 LDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT 234
           L+++ N +  +  S  + GL K+  +DL    I       Q+      L TL L  N  T
Sbjct: 319 LNLSYNLLGELY-SSNFYGLPKVAYIDLQKNHIAIIQD--QTFKFLEKLQTLDLRDNALT 375

Query: 235 ATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFP 294
                   +H   ++  + L  + L      ++  I  +   + +S   +  +       
Sbjct: 376 -------TIHFIPSIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLENLDILYFLL 423

Query: 295 HFKSLEHLDM---RFARIALNTSFLQIIGESMPSLKYLSLSGSTL-GTNSSRILDQGLCP 350
               L+ L +   RF+  + + +         PSL+ L L  + L     + +       
Sbjct: 424 RVPHLQILILNQNRFSSCSGDQTP-----SENPSLEQLFLGENMLQLAWETELCWDVFEG 478

Query: 351 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 410
           L+HLQ LY+++N L    P   ++ T+LR L ++ N+LT     S      ++E L +S 
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT---VLSHNDLPANLEILDISR 535

Query: 411 NHFRIPVSLEPLFNHSKLKIFDAKNN 436
           N    P           L + D  +N
Sbjct: 536 NQLLAP----NPDVFVSLSVLDITHN 557

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  135 bits (341), Expect = 2e-32
 Identities = 74/369 (20%), Positives = 128/369 (34%), Gaps = 31/369 (8%)

Query: 598 CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN 657
           C  +         +L   +      L     LLL  N+       S      L+ L L +
Sbjct: 2   CSFDGRIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGS 57

Query: 658 NNLSGKI-PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL--PS 714
                 I      NL  L+ + +  + +    P  F  L  L  L +    +S ++    
Sbjct: 58  QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117

Query: 715 CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ--LS 771
            F  L ++ ++ LSKN +       +F   +SL ++D S N +       ++ L    LS
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177

Query: 772 HLNLAHNNLEGEVPIQLCRLNQ------LQLLDLSDNNLHGLIPSCFDNTTLHESYNNNS 825
             +LA N+L   V +   +         L++LD+S N     I   F N        +  
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237

Query: 826 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI 885
                    F            I +  + T   +A        S +  LDLS   +    
Sbjct: 238 LAHHIMGAGFG--------FHNIKDPDQNTFAGLA-------RSSVRHLDLSHGFVFSLN 282

Query: 886 PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAI 945
                 L  ++ LNL++N +       F  L +++ L+LSYN L          L  +A 
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342

Query: 946 FIVAYNNLS 954
             +  N+++
Sbjct: 343 IDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  134 bits (340), Expect = 2e-32
 Identities = 72/440 (16%), Positives = 138/440 (31%), Gaps = 66/440 (15%)

Query: 529 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 588
           R       N    +P     +L +     +S N +     SSF  +  LQ L+L +    
Sbjct: 7   RIAFYRFCNLT-QVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP 61

Query: 589 GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEI--PQSLS 645
             I         NL  L L ++ +   +    F  L +L  L L        +       
Sbjct: 62  LTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 646 KCSSLKGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD--SLQILD 702
              +L  L L+ N +    +    G L  L+ I    N +      E   L   +L    
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

Query: 703 ISDNNISGSLPSCFYPL--SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI 760
           ++ N++   +   +       + + L    + G        N  ++       N ++ S 
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG--------NGWTVDITGNFSNAISKSQ 232

Query: 761 PDWIDGLSQLSHLNLAHNNLEG--EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN---- 814
              +     +       +N++   +        + ++ LDLS   +  L    F+     
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL 292

Query: 815 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 874
             L+ +YN  +                       +    F             L  L  L
Sbjct: 293 KVLNLAYNKINK----------------------IADEAFYG-----------LDNLQVL 319

Query: 875 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 934
           +LS N L          L ++  ++L  N++      TF  L  +++LDL  N L+    
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT---- 375

Query: 935 RQLVDLNTLAIFIVAYNNLS 954
             +  + ++    ++ N L 
Sbjct: 376 -TIHFIPSIPDIFLSGNKLV 394

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  172 bits (438), Expect = 1e-45
 Identities = 109/553 (19%), Positives = 187/553 (33%), Gaps = 62/553 (11%)

Query: 269 SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGESMPSL 326
           ++  S KNL +S   +  + S   F  F  L+ LD+    I    + ++     +S+  L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAY-----QSLSHL 78

Query: 327 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFN 386
             L L+G+ +      +       L+ LQ+L     +L     + + +  +L+ L+V+ N
Sbjct: 79  STLILTGNPI----QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 387 QLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEPLFNHSKLKIF-DAKNNEINGEIN 443
            +          +LT++E L LS+N  +      L  L     L +  D   N +N    
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-- 192

Query: 444 ESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELS-----HIKMIGEFPNWLL 498
                  + +L  L+L +N+         +     L+   L      +   + +F    L
Sbjct: 193 -QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 499 ENNTKLEFLYL---VNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVY 555
           E    L          D          +    +    + +   +             L  
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 311

Query: 556 FNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL--K 613
            N            S      L+ L  ++NK      +   +   +LEFL LS N L  K
Sbjct: 312 VNCKFGQFPTLKLKS------LKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFK 362

Query: 614 GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG 673
           G      F   +L++L L  N  +  +  +      L+ L   ++NL       +     
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV----- 416

Query: 674 LQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLH 732
                             F  L +L  LDIS  +   +    F  L S++ + ++ N   
Sbjct: 417 ------------------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 733 GQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLN 792
                  F    +L  LDLS   L    P   + LS L  LN+A N L+        RL 
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518

Query: 793 QLQLLDLSDNNLH 805
            LQ + L  N   
Sbjct: 519 SLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  162 bits (413), Expect = 2e-42
 Identities = 103/517 (19%), Positives = 183/517 (35%), Gaps = 33/517 (6%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           LDLS N   +    S      L+ L LS   ++ +I+     SL  L  L + GN I   
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 62  MVS--KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSR 119
            +    GLS L+ L    T    + +         L+ L+++ N I +  +P+     S 
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEY---FSN 147

Query: 120 LSKLKKLDLRGN----LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEEL 175
           L+ L+ LDL  N    +    +           SL LS N +   I    F  +  L +L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKL 205

Query: 176 DINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFT 234
            + +N      +    +GL  L+   L     R+   L +    +   L  L +E     
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 235 A-TLTTTQELHNFTNLEYLTLDD-SSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQG 292
                    +  F  L  ++     S+ I  ++   S     ++L +  C+         
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQF----P 320

Query: 293 FPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLA 352
               KSL+ L     +     S +      +PSL++L LS + L  +      Q      
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEV-----DLPSLEFLDLSRNGL--SFKGCCSQSDFGTT 373

Query: 353 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 412
            L+ L +  N +  ++         L  LD   + L      S  + L ++  L +S+ H
Sbjct: 374 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 413 FRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKF 472
            R+          S L++     N    E       T    L  L LS    + ++ P  
Sbjct: 433 TRV-AFNGIFNGLSSLEVLKMAGNSFQ-ENFLPDIFTELRNLTFLDLSQCQLEQLS-PTA 489

Query: 473 LYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL 509
                 L+   ++  + +   P+ + +  T L+ ++L
Sbjct: 490 FNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWL 525

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  162 bits (413), Expect = 3e-42
 Identities = 97/486 (19%), Positives = 178/486 (36%), Gaps = 40/486 (8%)

Query: 352 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 411
              + L +  N LR    +   +   L++LD+S  ++  +I       L+ +  L L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 412 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 471
             +  ++L      S L+   A    +    N    +     LK L+++ N   S   P+
Sbjct: 87  PIQS-LALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPE 143

Query: 472 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEF----LYLVNDSL----AGPFRLPIH 523
           +  +   L+  +LS  K I       L    ++      L L  + +     G F+    
Sbjct: 144 YFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-- 200

Query: 524 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI------PSSFGNVIFL 577
              RL  L + NN    ++       L  L    + +              S+   +  L
Sbjct: 201 ---RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 578 QF--LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG-HIFSRIFSLRNLRWLLLEGN 634
                 L+      +    L  C  N+   SL + +++    FS  F  ++L  +  +  
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 635 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE--GPIPVEF 692
            F         K  SLK L   +N           +L  L+ + + +N L   G      
Sbjct: 318 QF------PTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 693 CRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDL 751
               SL+ LD+S N +  ++ S F  L  ++ +    + L    +   F +  +L+ LD+
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 752 SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGLIPS 810
           S+ +   +     +GLS L  L +A N+ +          L  L  LDLS   L  L P+
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 811 CFDNTT 816
            F++ +
Sbjct: 489 AFNSLS 494

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  162 bits (411), Expect = 4e-42
 Identities = 97/576 (16%), Positives = 194/576 (33%), Gaps = 77/576 (13%)

Query: 92  FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 151
             + + LD+S N + +L             +L+ LDL           +   LS L++L 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 152 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 211
           L+ N +Q S+    F  LS+L++L   +  + ++E +     L+ LK L+++   I+   
Sbjct: 83  LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFK 140

Query: 212 KLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEY--LTLDDSSLHISLLQSIGS 269
            L +   +  +L  L L SN   +      +L     +    L+LD S   ++ +Q    
Sbjct: 141 -LPEYFSNLTNLEHLDLSSNKIQS--IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 270 IFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYL 329
               L  L++     +  +          LE   +         +  +    ++  L  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 330 SLSGSTLGTN--SSRILDQGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRILDVSFN 386
           ++    L         +      L ++    + +  +     +        L +++  F 
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 387 QLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESH 446
           Q        P + L S++ L  ++N      +     +   L+  D   N ++ +   S 
Sbjct: 318 QF-------PTLKLKSLKRLTFTSNKGG---NAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 447 SLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEF 506
           S      LK L LS N   +++                        F         +LE 
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMS----------------------SNFL-----GLEQLEH 400

Query: 507 LYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGS 566
           L                           ++N +      +   L +L+Y +IS      +
Sbjct: 401 LDF------------------------QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 567 IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRN 625
               F  +  L+ L ++ N         +     NL FL LS   L+  +    F+ L +
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSS 495

Query: 626 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS 661
           L+ L +  N           + +SL+ ++L+ N   
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  160 bits (407), Expect = 1e-41
 Identities = 117/581 (20%), Positives = 207/581 (35%), Gaps = 83/581 (14%)

Query: 145 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 204
            S  +L LS N L+  + +  F S   L+ LD++  EI  +E    Y+ L  L +L L+G
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTG 85

Query: 205 VGIRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLH 260
                 N +   ++G+F    SL  L     N  +       + +   L+ L +  + + 
Sbjct: 86  ------NPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQ 137

Query: 261 ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIG 320
              L    S   +L++L +S  ++  +         + L  + +    + L+ + +  I 
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCT----DLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 321 E---SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS 377
                   L  L+L  +    N   ++   +  LA L+   +   + R            
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLN---VMKTCIQGLAGLEVHRLVLGEFR------------ 238

Query: 378 LRILDVSFNQLTGSISSSPLVHLTS--IEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 435
                 +   L      S L  L +  IEE RL+   + +   ++     + +  F   +
Sbjct: 239 ------NEGNLE-KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 436 NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 495
             I          +  F  + L L +         K       LK    +  K    F  
Sbjct: 292 VTIE----RVKDFSYNFGWQHLELVNCKFGQFPTLKL----KSLKRLTFTSNKGGNAFS- 342

Query: 496 WLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVY 555
               +   LEFL L              S   L F    + +  G           SL Y
Sbjct: 343 --EVDLPSLEFLDL--------------SRNGLSFKGCCSQSDFG---------TTSLKY 377

Query: 556 FNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH 615
            ++S N +  ++ S+F  +  L+ LD  ++ L       + +   NL +L +S+   +  
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-V 435

Query: 616 IFSRIFS-LRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG 673
            F+ IF+ L +L  L + GN F         ++  +L  L L+   L    P    +L  
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 674 LQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 714
           LQ + M  N L+      F RL SLQ + +  N    S P 
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  155 bits (394), Expect = 8e-40
 Identities = 113/602 (18%), Positives = 190/602 (31%), Gaps = 121/602 (20%)

Query: 376 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 435
            S + LD+SFN L   + S        ++ L LS    +   ++E          +    
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ---TIED-------GAYQ--- 73

Query: 436 NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 495
                      SL+    L +L L+ N                           I     
Sbjct: 74  -----------SLS---HLSTLILTGNP--------------------------IQSLAL 93

Query: 496 WLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVY 555
                 + L+ L  V  +LA     PI   K L+ L+V++N  Q     E    L +L +
Sbjct: 94  GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 556 FNISMNALDGSIPSSFGNVIFLQF----LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNS 611
            ++S N +     +    +  +      LDLS N +    P       + L  L+L NN 
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE--IRLHKLTLRNNF 211

Query: 612 LKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL--------YLNNNNLSG 662
              ++       L  L    L    F  E        S+L+GL         L   +   
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 663 -KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR-LDSLQILDISDNNISGSLPSCFYPLS 720
             I      L  +    +    +E      +      L++++                 S
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK-----S 326

Query: 721 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN--GSIPDWIDGLSQLSHLNLAHN 778
           +K++  + N         +  +  SL  LDLS N L+  G       G + L +L+L+ N
Sbjct: 327 LKRLTFTSNKGG---NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 779 NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP-SCFDN----TTLHESYNNNSSPDKPFKT 833
            +   +      L QL+ LD   +NL  +   S F +      L  S+ +          
Sbjct: 384 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN---- 438

Query: 834 SFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNL 892
                            IF               LS L  L ++ N    +  P I   L
Sbjct: 439 ----------------GIFN-------------GLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 893 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 952
             +  L+LS   L    P  F++L  ++ L+++ N+L          L +L    +  N 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529

Query: 953 LS 954
             
Sbjct: 530 WD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  152 bits (387), Expect = 6e-39
 Identities = 116/605 (19%), Positives = 214/605 (35%), Gaps = 115/605 (19%)

Query: 21  SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGF 80
            S ++L LS N L   +      S  +L+ LD+   +I                      
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ--------------------- 65

Query: 81  KGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSS 140
             T +   + S ++L  L ++GN I +L    G    S LS L+KL        +     
Sbjct: 66  --TIEDGAYQSLSHLSTLILTGNPIQSL--ALGA--FSGLSSLQKLVAVETNLASLENFP 119

Query: 141 VARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLK-- 198
           +  L +L  L+++HN++Q     + F +L+NLE LD++ N+I ++      R L ++   
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLL 178

Query: 199 --SLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD 256
             SLDLS   +   N +         L+ L L +N  +  +  T  +     LE   L  
Sbjct: 179 NLSLDLSLNPM---NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC-IQGLAGLEVHRLVL 234

Query: 257 SSL--HISLLQSIGSIFPSLKNLSM-----SGCEVNGVLSGQGFPHFKSLEHLDMRFARI 309
                  +L +   S    L NL++     +  +         F    ++    +    I
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 310 ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP 369
                F          L+ ++       T            L  L+ L   +N    +  
Sbjct: 295 ERVKDFSY--NFGWQHLELVNCKFGQFPTLK----------LKSLKRLTFTSNKGGNAFS 342

Query: 370 WCLANTTSLRILDVSFNQLTG-SISSSPLVHLTSIEELRLSNNHFRIPVSLEPLF-NHSK 427
               +  SL  LD+S N L+     S      TS++ L LS N      ++   F    +
Sbjct: 343 --EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---TMSSNFLGLEQ 397

Query: 428 LKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHI 487
           L+  D +++ +  +++E         L  L +S                           
Sbjct: 398 LEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHT------------------------- 431

Query: 488 KMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIG 547
                  N +    + LE L +                        + N+FQ +   +I 
Sbjct: 432 -HTRVAFNGIFNGLSSLEVLKM------------------------AGNSFQENFLPDIF 466

Query: 548 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 607
             L +L + ++S   L+   P++F ++  LQ L++++N+L   +PD +     +L+ + L
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWL 525

Query: 608 SNNSL 612
             N  
Sbjct: 526 HTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  150 bits (381), Expect = 3e-38
 Identities = 86/453 (18%), Positives = 159/453 (35%), Gaps = 55/453 (12%)

Query: 548 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 607
           ++  S    ++S N L      SF +   LQ LDLS  ++   I D       +L  L L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL 83

Query: 608 SNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL-SGKIP 665
           + N ++  +    FS L +L+ L+    +        +    +LK L + +N + S K+P
Sbjct: 84  TGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 666 RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI----LDISDNNISGSLPSCFYPLSI 721
            +  NL  L+H+ +  N ++     +   L  + +    LD+S N ++   P  F  + +
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202

Query: 722 KQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI------PDWIDGLSQLS--HL 773
            ++ L  N     + +      + L    L                  ++GL  L+    
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 774 NLAHNNLEGEVPIQL-CRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFK 832
            LA+ +   +  I L   L  +    L    +  +    ++    H    N      P  
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT- 321

Query: 833 TSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG--------- 883
                      ++ K L+   FT+     A+    L  L  LDLS N L           
Sbjct: 322 -----------LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 884 ----------------HIPPQIGNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIESLDLSY 926
                            +      L +++ L+  H+NL        F +LR++  LD+S+
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 927 NKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 959
                        L++L +  +A N+       
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  138 bits (350), Expect = 2e-34
 Identities = 82/407 (20%), Positives = 139/407 (34%), Gaps = 43/407 (10%)

Query: 581 DLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGE 639
                    +IPD+L     + + L LS N L+ H+ S  F     L+ L L        
Sbjct: 13  QCMELNFY-KIPDNLP---FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 640 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 699
              +    S L  L L  N +          L  LQ +V  + +L          L +L+
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 700 ILDISDNNI-SGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSL----VTLDLSY 753
            L+++ N I S  LP  F  L +++ + LS N +   +          +    ++LDLS 
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 754 NYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDL------SDNNLHG 806
           N +N  I        +L  L L +N     V     + L  L++  L      ++ NL  
Sbjct: 187 NPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 807 LIPSCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEK------KILEIFEFT---- 855
              S  +    L       +  D        +     +V         I  + +F+    
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305

Query: 856 ------TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT--G 907
                        +    L  L  L  + NK          +L  ++ L+LS N L+  G
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG--GNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 908 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 954
               +      ++ LDLS+N +   +    + L  L      ++NL 
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  137 bits (346), Expect = 1e-33
 Identities = 84/448 (18%), Positives = 154/448 (34%), Gaps = 37/448 (8%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L        +     +  L +L+ L ++ N ++     +   +L +LE LD+  NKI   
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 62  MVS--KGLSKLK----SLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLE 115
             +  + L ++     SL LS            F     L  L +  N     V+   ++
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQ 222

Query: 116 RLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQ-----GSIDAKEFDSLS 170
            L+ L   + +        N      + L  L +L +    L             F+ L+
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 171 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLES 230
           N+    +    I+ V+      G + L+ ++                    SL  L   S
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT--------LKLKSLKRLTFTS 334

Query: 231 NNFTATLTTTQELHNFTNLEYLTLDDSSLH-ISLLQSIGSIFPSLKNLSMSGCEVNGVLS 289
           N             +  +LE+L L  + L              SLK L +S   V  +  
Sbjct: 335 NK----GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-- 388

Query: 290 GQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLC 349
              F   + LEHLD + +   L       +  S+ +L YL +S +      + I +    
Sbjct: 389 SSNFLGLEQLEHLDFQHSN--LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--- 443

Query: 350 PLAHLQELYIDNNDLRGSLPW-CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRL 408
            L+ L+ L +  N  + +          +L  LD+S  QL   +S +    L+S++ L +
Sbjct: 444 -LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNM 501

Query: 409 SNNHFRIPVSLEPLFNHSKLKIFDAKNN 436
           ++N  +  V        + L+      N
Sbjct: 502 ASNQLKS-VPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 97.5 bits (243), Expect = 5e-21
 Identities = 53/240 (22%), Positives = 87/240 (36%), Gaps = 26/240 (10%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L+L    F      +L +L SL+ L  + N+   +        L  LE LD+  N +   
Sbjct: 309 LELVNCKFGQ--FPTL-KLKSLKRLTFTSNKGGNAF---SEVDLPSLEFLDLSRNGLSFK 362

Query: 62  ----MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERL 117
                   G + LK L LS  G         F     LE LD   + +  +     +   
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNLKQMS-EFSV--F 417

Query: 118 SRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDI 177
             L  L  LD+       +       LSSL  L ++ N  Q +     F  L NL  LD+
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 178 NDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL----LQSMGSFPSLNTLHLESNNF 233
           +  +++ +     +  L  L+ L+++       N+L            SL  + L +N +
Sbjct: 478 SQCQLEQLS-PTAFNSLSSLQVLNMA------SNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.5 bits (212), Expect = 3e-17
 Identities = 54/263 (20%), Positives = 79/263 (30%), Gaps = 62/263 (23%)

Query: 702 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 761
              + N    +P    P S K + LS N L   L   +FF+   L  LDLS   +     
Sbjct: 13  QCMELNFY-KIPDNL-PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 762 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESY 821
                LS LS L L  N ++         L+ LQ L   + NL  L      +       
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH------- 122

Query: 822 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 881
                                                         L  L  L+++ N +
Sbjct: 123 ----------------------------------------------LKTLKELNVAHNLI 136

Query: 882 -VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRH----IESLDLSYNKLSGKIPRQ 936
               +P    NLT ++ L+LS N +          L        SLDLS N ++  I   
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPG 195

Query: 937 LVDLNTLAIFIVAYNNLSGKIPE 959
                 L    +  N  S  + +
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMK 218

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  157 bits (400), Expect = 9e-41
 Identities = 89/560 (15%), Positives = 176/560 (31%), Gaps = 80/560 (14%)

Query: 375 TTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAK 434
           T +++ LD+SFN++T  I    L    +++ L L ++     +  +  ++   L+  D  
Sbjct: 25  TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLS 82

Query: 435 NNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFP 494
           +N ++     S    P   LK L+L  N   ++       +   L+   + +++   E  
Sbjct: 83  DNHLSSL--SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140

Query: 495 NWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLV 554
                  T L  L +   SL       + S + +  L +  +     +     DIL S+ 
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVR 199

Query: 555 YFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE--FLSLSNNSL 612
           Y  +    L     S          +     + +  + D      + L    L LS    
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVEF 258

Query: 613 KGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK 672
                + +         ++     V        +  +++ L++    L   +      L+
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKV--------ETVTIRRLHIPQFYLFYDLSTVYSLLE 310

Query: 673 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH 732
            ++ I +  + +          L SL+ LD+S+N +                        
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK------------------ 352

Query: 733 GQLKEGTFFNCSSLVTLDLSYNYLN--GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR 790
                       SL TL LS N+L       + +  L  L+ L+++ N     +P     
Sbjct: 353 ---NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW 408

Query: 791 LNQLQLLDLSDNNLHGLIPSCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL 849
             +++ L+LS   +  +          L  S NN                        + 
Sbjct: 409 PEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNN------------------------LD 444

Query: 850 EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI 909
               F  +             L  L +S NKL   +P        +  + +S N L    
Sbjct: 445 SFSLFLPR-------------LQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVP 489

Query: 910 PLTFSNLRHIESLDLSYNKL 929
              F  L  ++ + L  N  
Sbjct: 490 DGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  152 bits (386), Expect = 6e-39
 Identities = 93/589 (15%), Positives = 173/589 (29%), Gaps = 97/589 (16%)

Query: 377 SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 436
           +  + D      T    S P     +++ L LS N     +    L   + L++   K++
Sbjct: 6   ASGVCDGRSRSFT----SIPSGLTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSS 60

Query: 437 EINGEINES--HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFP 494
            IN  I     +SL     L+ L LS N                           +    
Sbjct: 61  RIN-TIEGDAFYSLG---SLEHLDLSDN--------------------------HLSSLS 90

Query: 495 NWLLENNTKLEFLYLVNDSLAG-PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSL 553
           +      + L++L L+ +            +   L+ L + N      I       L SL
Sbjct: 91  SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150

Query: 554 VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK 613
               I   +L      S  ++  +  L L  ++    + +  A    ++ +L L + +L 
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLA 209

Query: 614 GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG 673
              FS +        +            +S ++   L    L  + +         +   
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTL 263

Query: 674 LQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLH 732
                   +  +    +      +++ L I    +   L + +  L  +K++ +  + + 
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

Query: 733 GQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW---IDGLSQLSHLNLAHNNLE--GEVPIQ 787
             +      +  SL  LDLS N +                L  L L+ N+L    +    
Sbjct: 324 -LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382

Query: 788 LCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE---SYNNNSSPDKPFKTSFSISGPQGSV 844
           L  L  L  LD+S N  H +  SC     +     S                        
Sbjct: 383 LLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG--------------------- 421

Query: 845 EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNN 904
              I  +               +   L  LD+S N L          L R+Q L +S N 
Sbjct: 422 ---IRVVKT------------CIPQTLEVLDVSNNNL-DSFSL---FLPRLQELYISRNK 462

Query: 905 LTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL 953
           L      +      +  + +S N+L          L +L    +  N  
Sbjct: 463 LKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  148 bits (375), Expect = 2e-37
 Identities = 96/506 (18%), Positives = 188/506 (37%), Gaps = 45/506 (8%)

Query: 324 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 383
            ++K L LS + +    + I    L   A+LQ L + ++ +         +  SL  LD+
Sbjct: 26  AAMKSLDLSFNKI----TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81

Query: 384 SFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNH-SKLKIFDAKNNEINGEI 442
           S N L+ S+SSS    L+S++ L L  N ++  + +  LF + + L+     N E   EI
Sbjct: 82  SDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQT-LGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 443 NESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNT 502
                      L  L + +    +    + L    ++    L              +  +
Sbjct: 140 RRI-DFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHL-SESAFLLEIFADILS 196

Query: 503 KLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI---------LPSL 553
            + +L L + +LA     P+   +    +                ++         L  +
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 554 VYFNISMNALDGSIPSSFGNV--------IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL 605
            + + ++N L    PS    V        + ++ L +    L       +      ++ +
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRI 315

Query: 606 SLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQS---LSKCSSLKGLYLNNNNLS 661
           ++ N+ +   +       L++L +L L  N  V E  ++        SL+ L L+ N+L 
Sbjct: 316 TVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

Query: 662 --GKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL 719
              K    L  LK L  + + +N    P+P      + ++ L++S   I   + +C  P 
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTC-IPQ 431

Query: 720 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNN 779
           +++ + +S N L     +        L  L +S N L  ++PD       L  + ++ N 
Sbjct: 432 TLEVLDVSNNNL-----DSFSLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQ 484

Query: 780 LEGEVPIQLCRLNQLQLLDLSDNNLH 805
           L+        RL  LQ + L  N   
Sbjct: 485 LKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  147 bits (374), Expect = 2e-37
 Identities = 89/508 (17%), Positives = 189/508 (37%), Gaps = 46/508 (9%)

Query: 296 FKSLEHLDMRFARIAL--NTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 353
             +++ LD+ F +I    +         +  +L+ L L  S +    + I       L  
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDL-----RACANLQVLILKSSRI----NTIEGDAFYSLGS 75

Query: 354 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 413
           L+ L + +N L           +SL+ L++  N       +S   +LT+++ LR+ N   
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 414 RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFL 473
              +        + L   + K   +     +S SL     +  L+L  +    +    F 
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRN--YQSQSLKSIRDIHHLTLHLSESAFL-LEIFA 192

Query: 474 YHQHELKEAELSHIKMIGEFPNWL--LENNTKLEFLYLVNDSLAGP-------FRLPIHS 524
                ++  EL    +     + L   E ++ ++ L      L              I  
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252

Query: 525 HKRLRFLDVSNNNFQGHIPVEIGDI-------LPSLVYFNISMNALDGSIPSSFGNVIFL 577
              + F D + N      P E   +         ++   +I    L   + + +  +  +
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 578 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSR---IFSLRNLRWLLLEGN 634
           + + + N+K+   +P   +    +LEFL LS N +            +  +L+ L+L  N
Sbjct: 313 KRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 635 HF--VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEF 692
           H   + +  + L    +L  L ++ N     +P      + ++ + +    +     V+ 
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV---VKT 427

Query: 693 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 752
           C   +L++LD+S+NN+  S     +   ++++++S+N L   L + + F    L+ + +S
Sbjct: 428 CIPQTLEVLDVSNNNLD-SFSL--FLPRLQELYISRNKLK-TLPDASLFP--VLLVMKIS 481

Query: 753 YNYLNGSIPDWIDGLSQLSHLNLAHNNL 780
            N L        D L+ L  + L  N  
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  145 bits (367), Expect = 2e-36
 Identities = 75/453 (16%), Positives = 158/453 (34%), Gaps = 62/453 (13%)

Query: 528 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 587
           ++ LD+S N    +I         +L    +  + ++     +F ++  L+ LDLS+N L
Sbjct: 28  MKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 588 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIP-QSLS 645
           +  +         +L++L+L  N  +    + +F  L NL+ L +       EI     +
Sbjct: 87  S-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 646 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 705
             +SL  L +   +L     + L +++ + H+ +  +     + +    L S++ L++ D
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 706 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT----------LDLSYNY 755
            N++    S      +             L + +F     L+            D + N 
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 756 LNGSIPDWIDGLS--------QLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 807
           L    P   D +S         +  L++    L  ++      L +++ + + ++ +  +
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325

Query: 808 IPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 863
             S   +      L  S N     ++  K S                             
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMV--EEYLKNSACKGA------------------------ 359

Query: 864 QGRVLSLLAGLDLSCNKL--VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES 921
                  L  L LS N L  +      +  L  + +L++S N     +P +      +  
Sbjct: 360 ----WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRF 414

Query: 922 LDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 954
           L+LS   +   +   +    TL +  V+ NNL 
Sbjct: 415 LNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  144 bits (366), Expect = 2e-36
 Identities = 109/591 (18%), Positives = 201/591 (34%), Gaps = 96/591 (16%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
            D    +F + + S L   ++++SL LS N++   I   +L +  +L+ L +  ++I   
Sbjct: 10  CDGRSRSFTS-IPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRI--- 62

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
                                T +   F S  +LE LD+S N + +L           LS
Sbjct: 63  --------------------NTIEGDAFYSLGSLEHLDLSDNHLSSL--SSSW--FGPLS 98

Query: 122 KLKKLDLRGN-LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 180
            LK L+L GN      + S    L++L +L + +      I   +F  L++L EL+I   
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 181 EIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTA-TLTT 239
            + N + S+  + +R +  L L         ++        S+  L L   N      + 
Sbjct: 159 SLRNYQ-SQSLKSIRDIHHLTLHLSESAFLLEIFAD--ILSSVRYLELRDTNLARFQFSP 215

Query: 240 TQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSL 299
                  + ++ L    S L       +  +   +  LS                 F   
Sbjct: 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS--------------EVEFDDC 261

Query: 300 EHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 359
               +     + +    ++      +++ L +    L       L      L  ++ + +
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL----FYDLSTVYSLLEKVKRITV 317

Query: 360 DNNDLRGSLPWCLANTTSLRILDVSFNQLT--GSISSSPLVHLTSIEELRLSNNHFR-IP 416
           +N+ +         +  SL  LD+S N +      +S+      S++ L LS NH R + 
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 417 VSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQ 476
            + E L     L   D   N  +   +         +++ L+LSS               
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE---KMRFLNLSST-------------- 420

Query: 477 HELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNN 536
                        I      +      LE L + N++L       +    RL+ L +S N
Sbjct: 421 ------------GIRVVKTCIP---QTLEVLDVSNNNLD---SFSLFLP-RLQELYISRN 461

Query: 537 NFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 587
             +  +P     + P L+   IS N L       F  +  LQ + L  N  
Sbjct: 462 KLK-TLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  135 bits (342), Expect = 2e-33
 Identities = 74/401 (18%), Positives = 138/401 (34%), Gaps = 30/401 (7%)

Query: 577 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 635
               D  +   T  IP  L      ++ L LS N +  +I         NL+ L+L+ + 
Sbjct: 7   SGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSR 61

Query: 636 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL-EGPIPVEFCR 694
                  +     SL+ L L++N+LS     W G L  L+++ +  N      +   F  
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 695 LDSLQILDISDNNISGSLP-SCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 752
           L +LQ L I +      +    F  L S+ ++ +    L    +  +  +   +  L L 
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLH 180

Query: 753 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEG-----------EVPIQLCRLNQLQLLDLSD 801
            +     +  + D LS + +L L   NL               P++        L D S 
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 802 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 861
           N L  L+    + + +       +       +   +    G VE   +         + Y
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 862 AYQG--RVLSLLAGLDLSCNKLVGHIPPQIG-NLTRIQTLNLSHNNLTGTIPLT---FSN 915
                  +L  +  + +  +K+   +P     +L  ++ L+LS N +             
Sbjct: 301 DLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 916 LRHIESLDLSYNKLS--GKIPRQLVDLNTLAIFIVAYNNLS 954
              +++L LS N L    K    L+ L  L    ++ N   
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 95.2 bits (237), Expect = 3e-20
 Identities = 47/266 (17%), Positives = 97/266 (36%), Gaps = 27/266 (10%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 60
           + D + +  +           ++R L++    L           L  ++ + +  +K+  
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYL-FYDLSTVYSLLEKVKRITVENSKVFL 324

Query: 61  F--MVSKGLSKLKSLGLSGTGFK--GTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLER 116
                S+ L  L+ L LS          +     ++ +L+ L +S N + ++     +  
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI-- 382

Query: 117 LSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELD 176
           L  L  L  LD+  N   + +  S      +  L+LS   ++  +          LE LD
Sbjct: 383 LLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKT---CIPQTLEVLD 437

Query: 177 INDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL--LQSMGSFPSLNTLHLESNNFT 234
           +++N +D+  +      L +L+ L +S       NKL  L     FP L  + +  N   
Sbjct: 438 VSNNNLDSFSL-----FLPRLQELYIS------RNKLKTLPDASLFPVLLVMKISRNQLK 486

Query: 235 ATLTTTQELHNFTNLEYLTLDDSSLH 260
           +           T+L+ + L  +   
Sbjct: 487 S--VPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.5 bits (212), Expect = 3e-17
 Identities = 47/246 (19%), Positives = 81/246 (32%), Gaps = 44/246 (17%)

Query: 693 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 752
              D+  + D    + + S+PS     ++K + LS N +   +  G    C++L  L L 
Sbjct: 2   LSCDASGVCDGRSRSFT-SIPSGL-TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILK 58

Query: 753 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL-IPSC 811
            + +N    D    L  L HL+L+ N+L          L+ L+ L+L  N    L + S 
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 812 FDN----TTLHESYNNNSS--PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 865
           F N     TL        S      F                                  
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAG-------------------------------- 146

Query: 866 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLS 925
             L+ L  L++    L  +    + ++  I  L L  +     + +    L  +  L+L 
Sbjct: 147 --LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 926 YNKLSG 931
              L+ 
Sbjct: 205 DTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 76.7 bits (189), Expect = 2e-14
 Identities = 38/221 (17%), Positives = 69/221 (31%), Gaps = 44/221 (19%)

Query: 741 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 800
            +C +    D        SIP  +   + +  L+L+ N +       L     LQ+L L 
Sbjct: 2   LSCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 801 DNNLHGLIPSCFDN----TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFT 855
            + ++ +    F +      L  S N+ SS     F                        
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP---------------------- 96

Query: 856 TKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLTRIQTLNLSHNNLTGTIP-LTF 913
                       LS L  L+L  N      +     NLT +QTL + +      I  + F
Sbjct: 97  ------------LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 914 SNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 954
           + L  +  L++    L     + L  +  +    +  +  +
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  154 bits (392), Expect = 3e-40
 Identities = 81/475 (17%), Positives = 175/475 (36%), Gaps = 59/475 (12%)

Query: 12  NVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLK 71
           N + +   L+      L    +  ++   +LD    +  L      I      + L+ L 
Sbjct: 15  NQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQ---VTTLQADRLGIKSIDGVEYLNNLT 71

Query: 72  SLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN 131
            +  S        D+    +   L  + M+ N+I        +  L+ L+ L  L L  N
Sbjct: 72  QINFSNNQLT---DITPLKNLTKLVDILMNNNQI------ADITPLANLTNLTGLTLFNN 122

Query: 132 LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY 191
               + +  +  L++L  L LS N +    D      L++L++L   +   D   ++   
Sbjct: 123 --QITDIDPLKNLTNLNRLELSSNTIS---DISALSGLTSLQQLSFGNQVTDLKPLA--- 174

Query: 192 RGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEY 251
             L  L+ LD+S   + D    +  +    +L +L   +N     ++    L   TNL+ 
Sbjct: 175 -NLTTLERLDISSNKVSD----ISVLAKLTNLESLIATNNQ----ISDITPLGILTNLDE 225

Query: 252 LTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL 311
           L+L+ +   +  + ++ S   +L +L ++  +++ +           L  L +   +I+ 
Sbjct: 226 LSLNGN--QLKDIGTLAS-LTNLTDLDLANNQISNL---APLSGLTKLTELKLGANQISN 279

Query: 312 NTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWC 371
            +         + +L  L L+ + L   S       +  L +L  L +  N++    P  
Sbjct: 280 ISPL-----AGLTALTNLELNENQLEDIS------PISNLKNLTYLTLYFNNISDISP-- 326

Query: 372 LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF 431
           +++ T L+ L    N+++     S L +LT+I  L   +N       L PL N +++   
Sbjct: 327 VSSLTKLQRLFFYNNKVS---DVSSLANLTNINWLSAGHNQIS---DLTPLANLTRITQL 380

Query: 432 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH 486
              +           +      +   +   N   ++  P  +       E +++ 
Sbjct: 381 GLNDQAWTNAPVNYKAN-----VSIPNTVKNVTGALIAPATISDGGSYTEPDITW 430

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  151 bits (384), Expect = 3e-39
 Identities = 98/476 (20%), Positives = 171/476 (35%), Gaps = 89/476 (18%)

Query: 351 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 410
           LA   +  +   ++  ++     +   +  L      +    S   + +L ++ ++  SN
Sbjct: 23  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSN 77

Query: 411 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 470
           N       + PL N +KL      NN+I   I    +LT    L  L+L +N        
Sbjct: 78  NQLT---DITPLKNLTKLVDILMNNNQIAD-ITPLANLT---NLTGLTLFNN-------- 122

Query: 471 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRF 530
                       +++ I  +         N T L  L L +++++      +     L+ 
Sbjct: 123 ------------QITDIDPLK--------NLTNLNRLELSSNTISDI--SALSGLTSLQQ 160

Query: 531 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 590
           L   N       P+     L +L   +IS N +  S  S    +  L+ L  +NN+++  
Sbjct: 161 LSFGNQ-VTDLKPLAN---LTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDI 214

Query: 591 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSL 650
            P  +     NL+ LSL+ N LK      + SL NL  L L  N      P  LS  + L
Sbjct: 215 TPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 267

Query: 651 KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG 710
             L L  N +S   P  L  L  L ++ + +N LE   P     L +L  L +  NNIS 
Sbjct: 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323

Query: 711 SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQL 770
             P                            + + L  L    N ++      +  L+ +
Sbjct: 324 ISP--------------------------VSSLTKLQRLFFYNNKVSD--VSSLANLTNI 355

Query: 771 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS 826
           + L+  HN +    P+    L ++  L L+D        +   N ++  +  N + 
Sbjct: 356 NWLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  148 bits (377), Expect = 3e-38
 Identities = 103/503 (20%), Positives = 178/503 (35%), Gaps = 51/503 (10%)

Query: 309 IALNTSFLQIIG-ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGS 367
           I  +T   QI    ++       L  + +    S         L  +  L  D   ++ S
Sbjct: 8   ITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS------QTDLDQVTTLQADRLGIK-S 60

Query: 368 LPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSK 427
           +   +    +L  ++ S NQLT     +PL +LT + ++ ++NN       + PL N + 
Sbjct: 61  ID-GVEYLNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIA---DITPLANLTN 113

Query: 428 LKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHI 487
           L      NN+I   I+   +LT    L  L LSSN   +++    L     L++    + 
Sbjct: 114 LTGLTLFNNQITD-IDPLKNLT---NLNRLELSSN---TISDISALSGLTSLQQLSFGN- 165

Query: 488 KMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIG 547
           ++    P   L N T LE L + ++ ++      +     L  L  +NN      P+ I 
Sbjct: 166 QVTDLKP---LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI- 219

Query: 548 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 607
             L +L   +++ N L      +  ++  L  LDL+NN+++   P         L  L L
Sbjct: 220 --LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKL 272

Query: 608 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW 667
             N +     S +  L  L  L L  N      P  +S   +L  L L  NN+S   P  
Sbjct: 273 GANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-- 326

Query: 668 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 727
           + +L  LQ +    N +          L ++  L    N IS  L        I Q+ L+
Sbjct: 327 VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQIS-DLTPLANLTRITQLGLN 383

Query: 728 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI-PDWIDGLSQLSHLNLAHNNLEGEVPI 786
                           +++   +   N     I P  I      +  ++  N        
Sbjct: 384 DQAWTNAPVN----YKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS-YTNE 438

Query: 787 QLCRLNQLQLLDLSDNNLHGLIP 809
                +Q   +        G + 
Sbjct: 439 VSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  143 bits (362), Expect = 2e-36
 Identities = 88/438 (20%), Positives = 172/438 (39%), Gaps = 54/438 (12%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L        +  +  +  L++L  +  S+N+L    D+  L +L  L ++ +  N+I   
Sbjct: 51  LQADRLGIKS--IDGVEYLNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIADI 105

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
                L+ L  L L         D+    +  NL  L++S N I        +  LS L+
Sbjct: 106 TPLANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLELSSNTI------SDISALSGLT 156

Query: 122 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNE 181
            L++L     +   + L  +A L++L  L +S N +    D      L+NLE L   +N+
Sbjct: 157 SLQQLSFGNQV---TDLKPLANLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQ 210

Query: 182 IDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQ 241
           I ++        L  L  L L+G  ++D    + ++ S  +L  L L +N     ++   
Sbjct: 211 ISDIT---PLGILTNLDELSLNGNQLKD----IGTLASLTNLTDLDLANNQ----ISNLA 259

Query: 242 ELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEH 301
            L   T L  L L  +   IS +  +  +  +L NL ++  ++  +       + K+L +
Sbjct: 260 PLSGLTKLTELKLGAN--QISNISPLAGL-TALTNLELNENQLEDI---SPISNLKNLTY 313

Query: 302 LDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDN 361
           L + F  I+  +        S+  L+ L    + +   SS      L  L ++  L   +
Sbjct: 314 LTLYFNNISDISPV-----SSLTKLQRLFFYNNKVSDVSS------LANLTNINWLSAGH 362

Query: 362 NDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP 421
           N +    P  LAN T +  L ++        +++P+ +  ++       N     ++   
Sbjct: 363 NQISDLTP--LANLTRITQLGLNDQA----WTNAPVNYKANVSIPNTVKNVTGALIAPAT 416

Query: 422 LFNHSKLKIFDAKNNEIN 439
           + +       D   N  +
Sbjct: 417 ISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  137 bits (347), Expect = 2e-34
 Identities = 95/448 (21%), Positives = 167/448 (37%), Gaps = 68/448 (15%)

Query: 498 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 557
                +     L   ++     +      ++  L       +    VE    L +L   N
Sbjct: 20  DTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKSIDGVEY---LNNLTQIN 74

Query: 558 ISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF 617
            S N L    P    N+  L  + ++NN++    P        NL  L+L NN +     
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA---NLTNLTGLTLFNNQITD--I 127

Query: 618 SRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHI 677
             + +L NL  L L  N        +LS  +SL+ L   N  ++   P  L NL  L+ +
Sbjct: 128 DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERL 182

Query: 678 VMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKE 737
            +  N +         +L +L+ L  ++N IS  +       ++ ++ L+ N L      
Sbjct: 183 DISSNKVSDISV--LAKLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLK---DI 236

Query: 738 GTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLL 797
           GT  + ++L  LDL+ N ++   P  + GL++L+ L L  N +    P+    L  L  L
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNL 292

Query: 798 DLSDNNLHGLIP--SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT 855
           +L++N L  + P  +  + T L   +N                         I +I   +
Sbjct: 293 ELNENQLEDISPISNLKNLTYLTLYFN------------------------NISDISPVS 328

Query: 856 TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSN 915
           +           L+ L  L    NK+       + NLT I  L+  HN ++   PL  +N
Sbjct: 329 S-----------LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPL--AN 373

Query: 916 LRHIESLDLSYNKLSGKIPRQLVDLNTL 943
           L  I  L L+    +        +++  
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVSIP 401

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  133 bits (337), Expect = 3e-33
 Identities = 96/491 (19%), Positives = 165/491 (33%), Gaps = 78/491 (15%)

Query: 219 SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 278
           +        L   N    +T T    +   +  L      L I  +  +     +L  ++
Sbjct: 22  ALAEKMKTVLGKTN----VTDTVSQTDLDQVTTLQA--DRLGIKSIDGVEY-LNNLTQIN 74

Query: 279 MSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGT 338
            S  ++  +       +   L  + M   +IA  T        ++ +L  L+L  + +  
Sbjct: 75  FSNNQLTDI---TPLKNLTKLVDILMNNNQIADITPL-----ANLTNLTGLTLFNNQITD 126

Query: 339 NSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLV 398
                    L  L +L  L + +N +       L+  TSL+ L              PL 
Sbjct: 127 IDP------LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQV----TDLKPLA 174

Query: 399 HLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLS 458
           +LT++E L +S+N       +  L   + L+   A NN+I+  I     LT    L  LS
Sbjct: 175 NLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQISD-ITPLGILT---NLDELS 227

Query: 459 LSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPF 518
           L+ N                        +K IG        + T L  L L N+ ++   
Sbjct: 228 LNGN-----------------------QLKDIGTL-----ASLTNLTDLDLANNQISNL- 258

Query: 519 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 578
             P+    +L  L +  N      P+     L +L    ++ N L+   P    N+  L 
Sbjct: 259 -APLSGLTKLTELKLGANQISNISPLAG---LTALTNLELNENQLEDISP--ISNLKNLT 312

Query: 579 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 638
           +L L  N ++   P         L+ L   NN +     S + +L N+ WL    N    
Sbjct: 313 YLTLYFNNISDISPVS---SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD 367

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 698
             P  L+  + +  L LN+   +     +  N+     +      L  P         S 
Sbjct: 368 LTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA--TISDGGSY 423

Query: 699 QILDISDNNIS 709
              DI+ N  S
Sbjct: 424 TEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  129 bits (327), Expect = 7e-32
 Identities = 86/411 (20%), Positives = 149/411 (36%), Gaps = 65/411 (15%)

Query: 550 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 609
           L   +   +    +  ++     ++  +  L      +     D +     NL  ++ SN
Sbjct: 23  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVE-YLNNLTQINFSN 77

Query: 610 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 669
           N L       + +L  L  +L+  N      P  L+  ++L GL L NN ++   P  L 
Sbjct: 78  NQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LK 131

Query: 670 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 729
           NL  L  + +  N +          L SLQ L    N ++   P      +++++ +S N
Sbjct: 132 NLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLKPLANLT-TLERLDISSN 187

Query: 730 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 789
            +            ++L +L  + N ++   P  +  L+ L  L+L  N L+      L 
Sbjct: 188 KVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLA 240

Query: 790 RLNQLQLLDLSDNNLHGLIP--SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKK 847
            L  L  LDL++N +  L P       T L    N                        +
Sbjct: 241 SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN------------------------Q 276

Query: 848 ILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG 907
           I  I                L+ L  L+L+ N+L    P  I NL  +  L L  NN++ 
Sbjct: 277 ISNISPLAG-----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323

Query: 908 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 958
             P+  S+L  ++ L    NK+S      L +L  +      +N +S   P
Sbjct: 324 ISPV--SSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  121 bits (307), Expect = 2e-29
 Identities = 79/389 (20%), Positives = 132/389 (33%), Gaps = 63/389 (16%)

Query: 569 SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 628
            +   +       L    +T  +          +  L      +K      +  L NL  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIK--SIDGVEYLNNLTQ 72

Query: 629 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI 688
           +    N      P  L   + L  + +NNN ++   P  L NL  L  + +  N +    
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128

Query: 689 PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT 748
           P     L +L  L++S N IS  + +     S++Q+                 N ++L  
Sbjct: 129 P--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQ----VTDLKPLANLTTLER 181

Query: 749 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 808
           LD+S N +  S    +  L+ L  L   +N +    P+    L  L  L L+ N L  + 
Sbjct: 182 LDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDIG 237

Query: 809 P-SCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGR 866
             +   N T L  + N                         I  +   +           
Sbjct: 238 TLASLTNLTDLDLANNQ------------------------ISNLAPLSG---------- 263

Query: 867 VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSY 926
            L+ L  L L  N++   I P +  LT +  L L+ N L    P+  SNL+++  L L +
Sbjct: 264 -LTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYF 318

Query: 927 NKLSGKIPRQLVDLNTLAIFIVAYNNLSG 955
           N +S   P  +  L  L       N +S 
Sbjct: 319 NNISDISP--VSSLTKLQRLFFYNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  108 bits (271), Expect = 9e-25
 Identities = 59/281 (20%), Positives = 110/281 (39%), Gaps = 31/281 (11%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 60
            LD+S N  ++  +S LA+L++L SL  ++N++    D+  L  L +L+EL + GN++  
Sbjct: 181 RLDISSNKVSD--ISVLAKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLKD 235

Query: 61  FMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRL 120
                 L+ L  L L+        ++        L  L +  N+I        +  L+ L
Sbjct: 236 IGTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQI------SNISPLAGL 286

Query: 121 SKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 180
           + L  L+L  N      +S ++ L +LT L L  N +    D     SL+ L+ L   +N
Sbjct: 287 TALTNLELNEN--QLEDISPISNLKNLTYLTLYFNNIS---DISPVSSLTKLQRLFFYNN 341

Query: 181 EIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTT 240
           ++ +V        L  +  L      I D    L  + +   +  L L    +     T 
Sbjct: 342 KVSDVS---SLANLTNINWLSAGHNQISD----LTPLANLTRITQLGLNDQAW-----TN 389

Query: 241 QELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 281
             ++   N+       +     +  +  S   S     ++ 
Sbjct: 390 APVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITW 430

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  105 bits (265), Expect = 5e-24
 Identities = 71/381 (18%), Positives = 124/381 (32%), Gaps = 89/381 (23%)

Query: 582 LSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIP 641
             +  +     D             L   ++   +      L  +  L  +      +  
Sbjct: 9   TQDTPINQIFTDT---ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSI 61

Query: 642 QSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL 701
             +   ++L  +  +NN L+   P  L NL  L  I+M  N +    P     L +L  L
Sbjct: 62  DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117

Query: 702 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 761
            + +N I+   P                            N ++L  L+LS N ++    
Sbjct: 118 TLFNNQITDIDP--------------------------LKNLTNLNRLELSSNTISDISA 151

Query: 762 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTL 817
             + GL+ L  L+   N +    P+    L  L+ LD+S N +  +            +L
Sbjct: 152 --LSGLTSLQQLSF-GNQVTDLKPLA--NLTTLERLDISSNKVSDISV--LAKLTNLESL 204

Query: 818 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 877
             + N                        +I +I                L+ L  L L+
Sbjct: 205 IATNN------------------------QISDITPLGI-----------LTNLDELSLN 229

Query: 878 CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL 937
            N+L       + +LT +  L+L++N ++   PL  S L  +  L L  N++S   P  L
Sbjct: 230 GNQLKD--IGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP--L 283

Query: 938 VDLNTLAIFIVAYNNLSGKIP 958
             L  L    +  N L    P
Sbjct: 284 AGLTALTNLELNENQLEDISP 304

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  144 bits (367), Expect = 5e-38
 Identities = 66/390 (16%), Positives = 148/390 (37%), Gaps = 47/390 (12%)

Query: 23  LRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKG 82
             +L      +     +     L +     +    +   +  + L  +  L ++G     
Sbjct: 2   AATLATLPAPIN---QIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVA- 57

Query: 83  TFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVA 142
              ++  +   NLE L+++GN+I        +  LS L KL  L +  N    + +S++ 
Sbjct: 58  --SIQGIEYLTNLEYLNLNGNQI------TDISPLSNLVKLTNLYIGTN--KITDISALQ 107

Query: 143 RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDL 202
            L++L  L+L+ + +          +L+ +  L++  N    +        +  L  L +
Sbjct: 108 NLTNLRELYLNEDNISDIS---PLANLTKMYSLNLGANHN--LSDLSPLSNMTGLNYLTV 162

Query: 203 SGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHIS 262
           +   ++D    +  + +   L +L L  N     +     L + T+L Y T   +   I+
Sbjct: 163 TESKVKD----VTPIANLTDLYSLSLNYNQ----IEDISPLASLTSLHYFTAYVN--QIT 212

Query: 263 LLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGES 322
            +  + +    L +L +   ++  +       +   L  L++   +I+   +      + 
Sbjct: 213 DITPVAN-MTRLNSLKIGNNKITDL---SPLANLSQLTWLEIGTNQISDINAV-----KD 263

Query: 323 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILD 382
           +  LK L++  + +   S       L  L+ L  L+++NN L       +   T+L  L 
Sbjct: 264 LTKLKMLNVGSNQISDISV------LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 383 VSFNQLTGSISSSPLVHLTSIEELRLSNNH 412
           +S N +T      PL  L+ ++    +N  
Sbjct: 318 LSQNHIT---DIRPLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  135 bits (342), Expect = 1e-34
 Identities = 75/422 (17%), Positives = 146/422 (34%), Gaps = 92/422 (21%)

Query: 542 IPVEIGDI-----LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLA 596
           +P  I  I     L   +   +   ++   +      +  +  L ++  K+   I     
Sbjct: 8   LPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQG--I 62

Query: 597 MCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN 656
               NLE+L+L+ N +     S + +L  L  L +  N        +L   ++L+ LYLN
Sbjct: 63  EYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLN 118

Query: 657 NNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF 716
            +N+S   P  L NL  +  + +  NH    +      +  L  L ++++ +    P   
Sbjct: 119 EDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--- 172

Query: 717 YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 776
                                    N + L +L L+YN +    P  +  L+ L +    
Sbjct: 173 -----------------------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAY 207

Query: 777 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFK 832
            N +    P  +  + +L  L + +N +  L P    N    T L    N  S  +    
Sbjct: 208 VNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN---- 259

Query: 833 TSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNL 892
              ++                              L+ L  L++  N++       + NL
Sbjct: 260 ---AVKD----------------------------LTKLKMLNVGSNQISD--ISVLNNL 286

Query: 893 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 952
           +++ +L L++N L          L ++ +L LS N ++   P  L  L+ +     A   
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

Query: 953 LS 954
           + 
Sbjct: 345 IK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  133 bits (338), Expect = 3e-34
 Identities = 79/452 (17%), Positives = 153/452 (33%), Gaps = 109/452 (24%)

Query: 354 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 413
              L      +    P   A+        +    +T  +       L SI +L ++    
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKV 56

Query: 414 RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFL 473
               S++ +   + L+  +   N+I   I+   +L    +L +L + +N           
Sbjct: 57  A---SIQGIEYLTNLEYLNLNGNQITD-ISPLSNLV---KLTNLYIGTN----------- 98

Query: 474 YHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDV 533
                    +++ I  +    N                                LR L +
Sbjct: 99  ---------KITDISALQNLTN--------------------------------LRELYL 117

Query: 534 SNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP- 592
           + +N     P+     L  +   N+  N    S  S   N+  L +L ++ +K+    P 
Sbjct: 118 NEDNISDISPL---ANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTPI 173

Query: 593 DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKG 652
            +L     +L  LSL+ N ++    S + SL +L +     N      P  ++  + L  
Sbjct: 174 ANL----TDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNS 225

Query: 653 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL 712
           L + NN ++   P  L NL  L  + +  N +          L  L++L++  N IS  +
Sbjct: 226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQIS-DI 280

Query: 713 PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSH 772
                                        N S L +L L+ N L     + I GL+ L+ 
Sbjct: 281 SV-------------------------LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 773 LNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 804
           L L+ N++    P+    L+++   D ++  +
Sbjct: 316 LFLSQNHITDIRPLA--SLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  133 bits (337), Expect = 5e-34
 Identities = 78/391 (19%), Positives = 153/391 (39%), Gaps = 47/391 (12%)

Query: 48  LEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDN 107
              L      I++      L++     L         DV   +   ++  L ++G ++ +
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVT---DVVTQEELESITKLVVAGEKVAS 58

Query: 108 LVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFD 167
                 ++ +  L+ L+ L+L GN    + +S ++ L  LT+L++  N +    D     
Sbjct: 59  ------IQGIEYLTNLEYLNLNGN--QITDISPLSNLVKLTNLYIGTNKIT---DISALQ 107

Query: 168 SLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLH 227
           +L+NL EL +N++ I ++        L K+ SL+L           L  + +   LN L 
Sbjct: 108 NLTNLRELYLNEDNISDIS---PLANLTKMYSLNLGANHNL---SDLSPLSNMTGLNYLT 161

Query: 228 LESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGV 287
           +  +     +     + N T+L  L+L+ +   I  +  + S   SL   +    ++  +
Sbjct: 162 VTESK----VKDVTPIANLTDLYSLSLNYN--QIEDISPLAS-LTSLHYFTAYVNQITDI 214

Query: 288 LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQG 347
                  +   L  L +   +I   +        ++  L +L +  + +    S I    
Sbjct: 215 ---TPVANMTRLNSLKIGNNKITDLSPL-----ANLSQLTWLEIGTNQI----SDI--NA 260

Query: 348 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 407
           +  L  L+ L + +N +       L N + L  L ++ NQL        +  LT++  L 
Sbjct: 261 VKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNED-MEVIGGLTNLTTLF 317

Query: 408 LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI 438
           LS NH      + PL + SK+   D  N  I
Sbjct: 318 LSQNHIT---DIRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  129 bits (328), Expect = 7e-33
 Identities = 72/384 (18%), Positives = 136/384 (35%), Gaps = 59/384 (15%)

Query: 577 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 636
              L      +    PD             L   S+   +      L ++  L++ G   
Sbjct: 2   AATLATLPAPINQIFPD---ADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 637 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 696
                Q +   ++L+ L LN N ++   P  L NL  L ++ +  N +          L 
Sbjct: 57  --ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLT 110

Query: 697 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 756
           +L+ L ++++NIS   P       +  ++L  N     L      N + L  L ++ + +
Sbjct: 111 NLRELYLNEDNISDISPLANLT-KMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKV 167

Query: 757 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP--SCFDN 814
               P  I  L+ L  L+L +N +E   P  L  L  L       N +  + P  +    
Sbjct: 168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTRL 223

Query: 815 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 874
            +L    N                        KI ++                LS L  L
Sbjct: 224 NSLKIGNN------------------------KITDLSPLAN-----------LSQLTWL 248

Query: 875 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 934
           ++  N++       + +LT+++ LN+  N ++       +NL  + SL L+ N+L  +  
Sbjct: 249 EIGTNQISD--INAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDM 304

Query: 935 RQLVDLNTLAIFIVAYNNLSGKIP 958
             +  L  L    ++ N+++   P
Sbjct: 305 EVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  127 bits (321), Expect = 7e-32
 Identities = 79/389 (20%), Positives = 143/389 (36%), Gaps = 61/389 (15%)

Query: 321 ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRI 380
             +       L  +++    +         L  + +L +    +  S+   +   T+L  
Sbjct: 19  ADLAEGIRAVLQKASVTDVVT------QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEY 70

Query: 381 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEING 440
           L+++ NQ+T     SPL +L  +  L +  N       +  L N + L+      + I+ 
Sbjct: 71  LNLNGNQIT---DISPLSNLVKLTNLYIGTNKIT---DISALQNLTNLRELYLNEDNISD 124

Query: 441 EINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLEN 500
            I+   +LT   ++ SL+L +N+                    LS +  +         N
Sbjct: 125 -ISPLANLT---KMYSLNLGANHN-------------------LSDLSPLS--------N 153

Query: 501 NTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISM 560
            T L +L +    +      PI +   L  L ++ N  +   P+     L SL YF   +
Sbjct: 154 MTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIEDISPL---ASLTSLHYFTAYV 208

Query: 561 NALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRI 620
           N +    P    N+  L  L + NNK+T   P         L +L +  N +     + +
Sbjct: 209 NQITDITP--VANMTRLNSLKIGNNKITDLSPLA---NLSQLTWLEIGTNQISD--INAV 261

Query: 621 FSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 680
             L  L+ L +  N         L+  S L  L+LNNN L  +    +G L  L  + + 
Sbjct: 262 KDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 681 KNHLEGPIPVEFCRLDSLQILDISDNNIS 709
           +NH+    P     L  +   D ++  I 
Sbjct: 320 QNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  108 bits (271), Expect = 2e-25
 Identities = 54/233 (23%), Positives = 103/233 (44%), Gaps = 23/233 (9%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L+L  N  N + LS L+ ++ L  L +++++++   DV  + +L DL  L +  N+I+  
Sbjct: 137 LNLGAN-HNLSDLSPLSNMTGLNYLTVTESKVK---DVTPIANLTDLYSLSLNYNQIEDI 192

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
                L+ L              D+    +   L  L +  N+I        L  L+ LS
Sbjct: 193 SPLASLTSLHYFTAYVNQIT---DITPVANMTRLNSLKIGNNKI------TDLSPLANLS 243

Query: 122 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNE 181
           +L  L++  N    S +++V  L+ L  L++  N +    D    ++LS L  L +N+N+
Sbjct: 244 QLTWLEIGTN--QISDINAVKDLTKLKMLNVGSNQIS---DISVLNNLSQLNSLFLNNNQ 298

Query: 182 IDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT 234
           + N ++     GL  L +L LS   I D    ++ + S   +++    +    
Sbjct: 299 LGNEDME-VIGGLTNLTTLFLSQNHITD----IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  102 bits (257), Expect = 1e-23
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 17/182 (9%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 60
            L L+ N   +  +S LA L+SL       N++    D+  + ++  L  L IG NKI  
Sbjct: 181 SLSLNYNQIED--ISPLASLTSLHYFTAYVNQIT---DITPVANMTRLNSLKIGNNKITD 235

Query: 61  FMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRL 120
                 LS+L  L +         D+        L++L++  N+I ++        L+ L
Sbjct: 236 LSPLANLSQLTWLEIGTNQIS---DINAVKDLTKLKMLNVGSNQISDI------SVLNNL 286

Query: 121 SKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 180
           S+L  L L  N   N  +  +  L++LT+L LS N +    D +   SLS ++  D  + 
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT---DIRPLASLSKMDSADFANQ 343

Query: 181 EI 182
            I
Sbjct: 344 VI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.2 bits (108), Expect = 7e-05
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 60
           L L+ N   N  +  +  L++L +L+LS N +    D++ L SL  ++  D     I K
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT---DIRPLASLSKMDSADFANQVIKK 347

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  146 bits (371), Expect = 2e-37
 Identities = 74/298 (24%), Positives = 128/298 (42%), Gaps = 6/298 (2%)

Query: 519 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 578
            +P       R LD+  N  +  +  +     P L    ++ N +    P +F N+  L+
Sbjct: 25  AVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 579 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFV 637
            L L +N+L   IP  +     NL  L +S N +   +   +F  L NL+ L +  N  V
Sbjct: 84  TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 638 GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS 697
               ++ S  +SL+ L L   NL+      L +L GL  + +   ++       F RL  
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 698 LQILDISDNNISGSL-PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 756
           L++L+IS      ++ P+C Y L++  + ++   L   +      +   L  L+LSYN +
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPI 260

Query: 757 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 814
           +      +  L +L  + L    L    P     LN L++L++S N L  L  S F +
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  139 bits (353), Expect = 3e-35
 Identities = 67/379 (17%), Positives = 124/379 (32%), Gaps = 65/379 (17%)

Query: 580 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVG 638
           +     +    +P+ +         L L  N +K  +    F+   +L  L L  N    
Sbjct: 16  VLCHRKRFV-AVPEGIP---TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSA 70

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 698
             P + +   +L+ L L +N L          L  L  + + +N +   +   F  L +L
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130

Query: 699 QILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 757
           + L++ DN++       F  L S++Q+ L K  L   +      +   L+ L L +  +N
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN 189

Query: 758 GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 817
                    L +L  L ++H      +         L  L ++  NL  +      +   
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH--- 246

Query: 818 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 877
                                                             L  L  L+LS
Sbjct: 247 --------------------------------------------------LVYLRFLNLS 256

Query: 878 CNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ 936
            N +   I   +   L R+Q + L    L    P  F  L ++  L++S N+L+  +   
Sbjct: 257 YNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEES 314

Query: 937 LVD-LNTLAIFIVAYNNLS 954
           +   +  L   I+  N L+
Sbjct: 315 VFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  131 bits (332), Expect = 2e-32
 Identities = 73/387 (18%), Positives = 129/387 (33%), Gaps = 86/387 (22%)

Query: 548 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 607
            I       ++  N +       F +   L+ L+L+ N ++  +         NL  L L
Sbjct: 29  GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGL 87

Query: 608 SNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR 666
            +N LK  I   +F+ L NL  L +  N  V  +        +LK L + +N+L   I  
Sbjct: 88  RSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YIS- 144

Query: 667 WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVH 725
                                    F  L+SL+ L +   N++         L  +  + 
Sbjct: 145 ----------------------HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182

Query: 726 LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 785
           L    ++  +++ +F     L  L++S+     ++         L+ L++ H NL   VP
Sbjct: 183 LRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVP 240

Query: 786 IQLCR-LNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSV 844
               R L  L+ L+LS N +  +  S                                  
Sbjct: 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHE------------------------------ 270

Query: 845 EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHN 903
                                  L  L  + L   +L   + P     L  ++ LN+S N
Sbjct: 271 -----------------------LLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGN 306

Query: 904 NLTGTIPLTFSNLRHIESLDLSYNKLS 930
            LT      F ++ ++E+L L  N L+
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  123 bits (311), Expect = 9e-30
 Identities = 85/338 (25%), Positives = 138/338 (40%), Gaps = 50/338 (14%)

Query: 92  FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVAR-----LSS 146
                +LD+  N I  L      +  +    L++L+L  N+     +S+V       L +
Sbjct: 31  PTETRLLDLGKNRIKTL----NQDEFASFPHLEELELNENI-----VSAVEPGAFNNLFN 81

Query: 147 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 206
           L +L L  N L+  I    F  LSNL +LDI++N+I  +     ++ L  LKSL++    
Sbjct: 82  LRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILL-DYMFQDLYNLKSLEVG--- 136

Query: 207 IRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHIS 262
               N L+  S  +F    SL  L LE  N T+  T    L +   L  L L    L+I+
Sbjct: 137 ---DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA--LSHLHGLIVLRL--RHLNIN 189

Query: 263 LLQSIGSIF---PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM---RFARIALNTSFL 316
            ++     F     LK L +S       ++        +L  L +       +       
Sbjct: 190 AIRD--YSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLA-V- 244

Query: 317 QIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTT 376
                 +  L++L+LS + +    S I    L  L  LQE+ +    L    P+      
Sbjct: 245 ----RHLVYLRFLNLSYNPI----STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296

Query: 377 SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 414
            LR+L+VS NQLT ++  S    + ++E L L +N   
Sbjct: 297 YLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  120 bits (303), Expect = 8e-29
 Identities = 64/321 (19%), Positives = 109/321 (33%), Gaps = 36/321 (11%)

Query: 490 IGEFPNWLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE 545
           I         +   LE L L  + +     G F    ++   LR L + +N  +  IP+ 
Sbjct: 44  IKTLNQDEFASFPHLEELELNENIVSAVEPGAF----NNLFNLRTLGLRSNRLK-LIPLG 98

Query: 546 IGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL 605
           +   L +L   +IS N +   +   F ++  L+ L++ +N L   I         +LE L
Sbjct: 99  VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQL 157

Query: 606 SLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 664
           +L   +L   I +   S L  L  L L   +       S  +   LK L +++      +
Sbjct: 158 TLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 665 PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQV 724
                    L  + +   +L     +    L  L+ L++S N IS               
Sbjct: 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS--------------- 261

Query: 725 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 784
                     ++         L  + L    L    P    GL+ L  LN++ N L    
Sbjct: 262 ---------TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312

Query: 785 PIQLCRLNQLQLLDLSDNNLH 805
                 +  L+ L L  N L 
Sbjct: 313 ESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  118 bits (298), Expect = 4e-28
 Identities = 59/265 (22%), Positives = 103/265 (38%), Gaps = 22/265 (8%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L L  N      L     LS+L  L +S+N++   +       L +L+ L++G N +   
Sbjct: 85  LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYI 143

Query: 62  MVS--KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSR 119
                 GL+ L+ L L       +         + L VL +    I+ +          R
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAI--RDYS--FKR 198

Query: 120 LSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND 179
           L +LK L++      +++  +     +LTSL ++H  L  ++       L  L  L+++ 
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSY 257

Query: 180 NEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSF---PSLNTLHLESNNFTA 235
           N I  +E       L +L+ + L       G +L      +F     L  L++  N  T 
Sbjct: 258 NPISTIE-GSMLHELLRLQEIQLV------GGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310

Query: 236 TLTTTQELHNFTNLEYLTLDDSSLH 260
              +    H+  NLE L LD + L 
Sbjct: 311 LEESV--FHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (289), Expect = 5e-27
 Identities = 74/327 (22%), Positives = 131/327 (40%), Gaps = 43/327 (13%)

Query: 21  SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSGT 78
           +  R L L  NR++ +++  E  S   LEEL++  N +          L  L++LGL   
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 79  GFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSIL 138
             K    +  F   +NL  LD+S N+I  L     +     L  LK L++  N      L
Sbjct: 91  RLK-LIPLGVFTGLSNLTKLDISENKIVIL--LDYM--FQDLYNLKSLEVGDND-----L 140

Query: 139 SSV-----ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRG 193
             +     + L+SL  L L    L  SI  +    L  L  L +    I+ +     ++ 
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIR-DYSFKR 198

Query: 194 LRKLKSLDLSGVGIRDGNKLLQSM--GSF--PSLNTLHLESNNFTATLTTTQELHNFTNL 249
           L +LK L++S          L +M        +L +L +   N TA       + +   L
Sbjct: 199 LYRLKVLEIS------HWPYLDTMTPNCLYGLNLTSLSITHCNLTA--VPYLAVRHLVYL 250

Query: 250 EYLTLDDSSLHISLLQSIGSIF---PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 306
            +L L  +   IS ++   S+      L+ + + G ++  V+    F     L  L++  
Sbjct: 251 RFLNLSYN--PISTIEG--SMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSG 305

Query: 307 ARIALNTSFLQIIGESMPSLKYLSLSG 333
            ++   T+  + +  S+ +L+ L L  
Sbjct: 306 NQL---TTLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 92.5 bits (230), Expect = 1e-19
 Identities = 51/268 (19%), Positives = 94/268 (35%), Gaps = 60/268 (22%)

Query: 697 SLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 755
             ++LD+  N I       F     ++++ L++N++   ++ G F N  +L TL L  N 
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNR 91

Query: 756 LNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 814
           L   IP  +  GLS L+ L+++ N +   +      L  L+ L++ DN+L  +    F  
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 815 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 874
                                                                L+ L  L
Sbjct: 151 -----------------------------------------------------LNSLEQL 157

Query: 875 DLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 933
            L    L   IP +   +L  +  L L H N+      +F  L  ++ L++S+      +
Sbjct: 158 TLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 934 PRQLVDLNTLAIFIVAYNNLSGKIPEWT 961
               +    L    + + NL+  +P   
Sbjct: 217 TPNCLYGLNLTSLSITHCNLT-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 92.1 bits (229), Expect = 2e-19
 Identities = 70/435 (16%), Positives = 140/435 (32%), Gaps = 124/435 (28%)

Query: 133 CNNSILSSVAR--LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 190
           C+     +V     +    L L  N ++ +++  EF S  +LEEL++N+N +  VE    
Sbjct: 18  CHRKRFVAVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVE-PGA 75

Query: 191 YRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLE 250
           +  L  L++L L        N+L              +    FT            +NL 
Sbjct: 76  FNNLFNLRTLGLRS------NRLKL------------IPLGVFT----------GLSNLT 107

Query: 251 YLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIA 310
            L + ++ +                           +L    F    +L+ L++    + 
Sbjct: 108 KLDISENKIV--------------------------ILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 311 -LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP 369
            ++          + SL+ L+L    L    + I  + L  L  L  L + + ++     
Sbjct: 142 YISHRAFS----GLNSLEQLTLEKCNL----TSIPTEALSHLHGLIVLRLRHLNINAIRD 193

Query: 370 WCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKL 428
           +       L++L++S      +++ + L +  ++  L +++ +   +P        H   
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVP---YLAVRHLV- 248

Query: 429 KIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIK 488
                                    L+ L+LS N                     +S I 
Sbjct: 249 ------------------------YLRFLNLSYN--------------------PISTI- 263

Query: 489 MIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD 548
                   +L    +L+ + LV   LA            LR L+VS N     +   +  
Sbjct: 264 -----EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFH 317

Query: 549 ILPSLVYFNISMNAL 563
            + +L    +  N L
Sbjct: 318 SVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 82.5 bits (204), Expect = 2e-16
 Identities = 46/266 (17%), Positives = 86/266 (32%), Gaps = 60/266 (22%)

Query: 696 DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 755
              + +         ++P    P   + + L KN +   L +  F +   L  L+L+ N 
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGI-PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENI 67

Query: 756 LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNNLHGLIPSCFDN 814
           ++   P   + L  L  L L  N L+  +P+ +   L+ L  LD+S+N +  L+   F +
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126

Query: 815 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 874
                                                                L  L  L
Sbjct: 127 -----------------------------------------------------LYNLKSL 133

Query: 875 DLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 933
           ++  N LV +I  +    L  ++ L L   NLT       S+L  +  L L +  ++   
Sbjct: 134 EVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192

Query: 934 PRQLVDLNTLAIFIVAYNNLSGKIPE 959
                 L  L +  +++      +  
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTP 218

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  139 bits (351), Expect = 7e-35
 Identities = 78/449 (17%), Positives = 146/449 (32%), Gaps = 35/449 (7%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
             ++ ++    + S      +++ L LS N L   I   +L     LE L++  N + + 
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYET 73

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
           +  + LS L++L L+    +      E     ++E L  + N I  +         SR  
Sbjct: 74  LDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNISRV-------SCSRGQ 120

Query: 122 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNE 181
             K + L  N             S +  L L  N +     A+   S   LE L++  N 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 182 IDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ---SMGSFPSLNTLHLESNNFTATLT 238
           I +V+         KLK+LDLS       NKL        S   +  + L +N       
Sbjct: 181 IYDVKGQ---VVFAKLKTLDLS------SNKLAFMGPEFQSAAGVTWISLRNNKLV---L 228

Query: 239 TTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKS 298
             + L    NLE+  L  +  H   L+   S    ++ ++    +    L+GQ       
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA---KQTVKKLTGQNEEECTV 285

Query: 299 LEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELY 358
                                 + + +LK    +  +   + +  L+      A  +E+ 
Sbjct: 286 PTLGHYGAYCC---EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREID 342

Query: 359 IDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVS 418
                 R  +        +   L+     L   +S+    H      L+ +     +  +
Sbjct: 343 ALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHA 402

Query: 419 LEPLFNHSKLKIFDAKNNEINGEINESHS 447
            E       L+    +  E+  E     +
Sbjct: 403 TEEQSPLQLLRAIVKRYEEMYVEQQSVQN 431

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  133 bits (337), Expect = 4e-33
 Identities = 72/411 (17%), Positives = 143/411 (34%), Gaps = 47/411 (11%)

Query: 545 EIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF 604
           EI           ++ ++L  ++ S   +   ++ LDLS N L+      LA     LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLEL 62

Query: 605 LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 664
           L+LS+N L       + SL  LR L L  N+      Q L    S++ L+  NNN+S ++
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 665 PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL--SIK 722
                  +G ++I +  N +     ++      +Q LD+  N I     +       +++
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 723 QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 782
            ++L  N ++  +K       + L TLDLS N L   +       + ++ ++L +N L  
Sbjct: 173 HLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 783 EVPIQLCRLNQLQLLDLSDNNLH-GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQ 841
            +   L     L+  DL  N  H G +   F      ++    +      +     + P 
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 842 GSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLS 901
                 +     +  +++   +  R+++L                           L+  
Sbjct: 288 ------LGHYGAYCCEDLPAPFADRLIAL--------------------KRKEHALLSGQ 321

Query: 902 HNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 952
            +     +     N      +D    +    +  Q+       I +     
Sbjct: 322 GSETER-LECERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKK 370

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  131 bits (332), Expect = 2e-32
 Identities = 78/483 (16%), Positives = 154/483 (31%), Gaps = 32/483 (6%)

Query: 351 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 410
               +   + ++ L+ +L     +  +++ LD+S N L+  IS++ L   T +E L LS+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 411 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 470
           N          L + S L+  D  NN +         L     +++L  ++N    V+  
Sbjct: 68  NVLY---ETLDLESLSTLRTLDLNNNYVQ-------ELLVGPSIETLHAANNNISRVSCS 117

Query: 471 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAG-PFRLPIHSHKRLR 529
           +        K   L++ K I    +      +++++L L  + +    F     S   L 
Sbjct: 118 RG----QGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 530 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 589
            L++  N     +  ++      L   ++S N L   +   F +   + ++ L NNKL  
Sbjct: 173 HLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 590 EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 649
            I   L     NLE   L  N        R F  +N R   +          Q+  +C+ 
Sbjct: 228 LIEKALRF-SQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 650 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG----PIPVEFCRLDSLQILDISD 705
               +            +   L  L+         +G     +  E       + +D   
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 706 NNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 764
                 +        +   +   K  L  +         + L             +    
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALD-EQVSNGRRAHAELDGTLQQAVGQI-ELQHAT 403

Query: 765 DGLSQLSHLN-LAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN 823
           +  S L  L  +     E  V  Q  + N ++  D+  +    L         L+   + 
Sbjct: 404 EEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADL 463

Query: 824 NSS 826
             +
Sbjct: 464 ALA 466

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  124 bits (314), Expect = 3e-30
 Identities = 70/459 (15%), Positives = 146/459 (31%), Gaps = 58/459 (12%)

Query: 367 SLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEPLFN 424
           ++     N    +I  V+ + L     +S      +++EL LS N         L P   
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPF-- 57

Query: 425 HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAEL 484
            +KL++ +  +N +  E  +  SL+    L++L L++N                ++E   
Sbjct: 58  -TKLELLNLSSNVLY-ETLDLESLS---TLRTLDLNNN---------------YVQE--- 94

Query: 485 SHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPV 544
                        L     +E L+  N++++   R+     +  + + ++NN       +
Sbjct: 95  -------------LLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRDL 138

Query: 545 EIGDILPSLVYFNISMNALDG-SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE 603
           + G     + Y ++ +N +D  +      +   L+ L+L  N +  ++   +      L+
Sbjct: 139 DEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLK 194

Query: 604 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS-G 662
            L LS+N L   +     S   + W+ L  N  V  I ++L    +L+   L  N    G
Sbjct: 195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 663 KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS----GSLPSCFYP 718
            +  +    + +Q +             E C +    +                      
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV--PTLGHYGAYCCEDLPAPFADRLIAL 310

Query: 719 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN 778
              +   LS      +  E    N +    +D         I            L     
Sbjct: 311 KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370

Query: 779 NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 817
            L+ +V        +L            L  +  + + L
Sbjct: 371 ALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPL 409

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  118 bits (296), Expect = 7e-28
 Identities = 66/469 (14%), Positives = 145/469 (30%), Gaps = 32/469 (6%)

Query: 120 LSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND 179
            ++ K   +  +    ++ S      ++  L LS N L   I A +    + LE L+++ 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 180 NEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTT 239
           N +           L  L++LDL+       N  +Q +   PS+ TLH  +NN      +
Sbjct: 68  NVLYETL---DLESLSTLRTLDLN------NNY-VQELLVGPSIETLHAANNNI-----S 112

Query: 240 TQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSL 299
                     + + L ++ + +      G     ++ L +   E++ V   +      +L
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 300 EHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 359
           EHL++++  I         +      LK L LS      N    +       A +  + +
Sbjct: 172 EHLNLQYNFI---YDVKGQV--VFAKLKTLDLSS-----NKLAFMGPEFQSAAGVTWISL 221

Query: 360 DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSL 419
            NN L   +   L  + +L   D+  N                ++ +           + 
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 420 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 479
           E     +          ++     +      + +   LS   +  + +   +   +Q   
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE--NQARQ 338

Query: 480 KEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQ 539
           +E +    +      + +         L     +L         +H  L          Q
Sbjct: 339 REIDALKEQ-YRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG-Q 396

Query: 540 GHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 588
             +     +  P  +   I     +  +         ++  D+  +K T
Sbjct: 397 IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  113 bits (284), Expect = 2e-26
 Identities = 62/406 (15%), Positives = 134/406 (33%), Gaps = 58/406 (14%)

Query: 601 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL 660
             +   ++++SLK  + S   S  N++ L L GN         L+  + L+ L L++N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 661 SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS 720
              +   L +L  L+ + +  N+++     E     S++ L  ++NNIS    S      
Sbjct: 71  YETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGK- 122

Query: 721 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG-SIPDWIDGLSQLSHLNLAHNN 779
            K ++L+ N +   L++      S +  LDL  N ++  +  +       L HLNL +N 
Sbjct: 123 -KNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 780 LEG---------------------EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 818
           +                        +  +      +  + L +N L  +  +   +  L 
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240

Query: 819 E------------------SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 860
                                    +  K      +    +      +     +  +++ 
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300

Query: 861 YAYQGRVLSL----LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 916
             +  R+++L     A L    ++    +  +  N  R + ++         I       
Sbjct: 301 APFADRLIALKRKEHALLSGQGSET-ERLECERENQARQREIDALKEQYRTVIDQVTLRK 359

Query: 917 RHIESLDLSYNKLSGKIP---RQLVDLNTLAIFIVAYNNLSGKIPE 959
           +   +L+     L  ++    R   +L+      V    L     E
Sbjct: 360 QAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE 405

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  101 bits (253), Expect = 2e-22
 Identities = 70/501 (13%), Positives = 144/501 (28%), Gaps = 72/501 (14%)

Query: 166 FDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ----SMGSFP 221
             + +  +   + D+ +     S   +    +K LDLS      GN L Q     +  F 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLR-QSAWNVKELDLS------GNPLSQISAADLAPFT 58

Query: 222 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 281
            L  L+L SN     L  T +L + + L  L L+++ +                      
Sbjct: 59  KLELLNLSSNV----LYETLDLESLSTLRTLDLNNNYV---------------------- 92

Query: 282 CEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSS 341
                    Q      S+E L      I+      ++        K + L+ + +    +
Sbjct: 93  ---------QELLVGPSIETLHAANNNIS------RVSCSRGQGKKNIYLANNKI----T 133

Query: 342 RILDQGLCPLAHLQELYIDNNDLRG-SLPWCLANTTSLRILDVSFNQLTGSISSSPLVHL 400
            + D      + +Q L +  N++   +     A++ +L  L++ +N +         V  
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVF 190

Query: 401 TSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSL 459
             ++ L LS+N    +    +     + +     +NN++               L+   L
Sbjct: 191 AKLKTLDLSSNKLAFMGPEFQSA---AGVTWISLRNNKLVLIEKALRFSQ---NLEHFDL 244

Query: 460 SSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPF- 518
             N     T   F      ++      +K +           T   +     + L  PF 
Sbjct: 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304

Query: 519 -RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFL 577
            RL     K    L    +  +  +  E  +        +         I          
Sbjct: 305 DRLIALKRKEHALLSGQGSETER-LECEREN-QARQREIDALKEQYRTVIDQVTLRKQAK 362

Query: 578 QFLDLSNNKLTGEIPDHL-AMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 636
             L+     L  ++ +   A   ++             H       L+ LR ++      
Sbjct: 363 ITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEM 422

Query: 637 VGEIPQSLSKCSSLKGLYLNN 657
             E     +       +Y + 
Sbjct: 423 YVEQQSVQNNAIRDWDMYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.4 bits (227), Expect = 3e-19
 Identities = 67/459 (14%), Positives = 143/459 (31%), Gaps = 37/459 (8%)

Query: 244 HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD 303
            N    +   + DSSL    L S+     ++K L +SG  ++ + +      F  LE L+
Sbjct: 7   QNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLELLN 64

Query: 304 MRFARIALNTSFLQIIGESMPSLKYLSLSG---STLGTNSS---------RILDQGLCPL 351
           +    +           ES+ +L+ L L+      L    S          I        
Sbjct: 65  LSSNVLYETLDL-----ESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119

Query: 352 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 411
              + +Y+ NN +           + ++ LD+  N++     +       ++E L L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 412 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 471
                  ++     +KLK  D  +N++     E  S      +  +SL +N    V   K
Sbjct: 180 FIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA---GVTWISLRNN--KLVLIEK 231

Query: 472 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFL 531
            L     L+  +L                N ++    +   ++                 
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV--QTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 532 DVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGS----IPSSFGNVIFLQFLDLSNNKL 587
                  +  +P    D L +L     ++ +  GS    +     N    + +D    + 
Sbjct: 290 HYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348

Query: 588 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 647
              + D + +       L     +L   + +   +   L   L +    + E+  +  + 
Sbjct: 349 R-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQ 406

Query: 648 SSLKGL-YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 685
           S L+ L  +        + +       ++   M ++   
Sbjct: 407 SPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 79.1 bits (195), Expect = 2e-15
 Identities = 33/220 (15%), Positives = 69/220 (31%), Gaps = 48/220 (21%)

Query: 740 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 799
             N +      ++ + L  ++         +  L+L+ N L       L    +L+LL+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 800 SDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT 855
           S N L+  +    ++     TL  + N                         + E+    
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNN------------------------YVQELLV-- 97

Query: 856 TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSN 915
                          +  L  + N +   +          + + L++N +T    L    
Sbjct: 98  ------------GPSIETLHAANNNI-SRVSC--SRGQGKKNIYLANNKITMLRDLDEGC 142

Query: 916 LRHIESLDLSYNKLSGKIPRQLV-DLNTLAIFIVAYNNLS 954
              ++ LDL  N++      +L    +TL    + YN + 
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 68.3 bits (167), Expect = 6e-12
 Identities = 28/200 (14%), Positives = 65/200 (32%), Gaps = 47/200 (23%)

Query: 759 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN---- 814
           +I +     ++     +  ++L+  +         ++ LDLS N L  +  +        
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 815 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 874
             L+ S N                         + E  +  +           LS L  L
Sbjct: 61  ELLNLSSN------------------------VLYETLDLES-----------LSTLRTL 85

Query: 875 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 934
           DL+ N +      ++     I+TL+ ++NN++          ++   + L+ NK++    
Sbjct: 86  DLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKKN---IYLANNKITMLRD 137

Query: 935 RQLVDLNTLAIFIVAYNNLS 954
                 + +    +  N + 
Sbjct: 138 LDEGCRSRVQYLDLKLNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 14/67 (20%), Positives = 27/67 (40%)

Query: 889 IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 948
             N  R +   ++ ++L   +     +  +++ LDLS N LS      L     L +  +
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 949 AYNNLSG 955
           + N L  
Sbjct: 66  SSNVLYE 72

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  134 bits (340), Expect = 4e-34
 Identities = 62/323 (19%), Positives = 121/323 (37%), Gaps = 18/323 (5%)

Query: 498 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 557
           L+ +     +++   +    F     +    + +   N+  +  +P  + D    +   N
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 558 ISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF 617
           ++   ++     +F     +Q L +  N +   +P H+      L  L L  N L   + 
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLP 133

Query: 618 SRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 676
             IF     L  L +  N+       +    +SL+ L L++N L+  +   L  +  L H
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFH 190

Query: 677 IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLK 736
             +  N L            +++ LD S N+I+         + +  + L  N L     
Sbjct: 191 ANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLT---D 240

Query: 737 EGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQL 796
                N   LV +DLSYN L   +      + +L  L +++N L   + +    +  L++
Sbjct: 241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 299

Query: 797 LDLSDNNLHGLIPSCFDNTTLHE 819
           LDLS N+L  +  +      L  
Sbjct: 300 LDLSHNHLLHVERNQPQFDRLEN 322

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  131 bits (331), Expect = 6e-33
 Identities = 80/390 (20%), Positives = 145/390 (37%), Gaps = 60/390 (15%)

Query: 548 DILPSLVYFNISMNALDGSIPSSFGNVIF--LQFLDLSNNKLTGEIPDHLAMCCVNLEFL 605
           ++    V++++ ++     +   F ++     + +   N+ +  ++P  L      +E L
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELL 74

Query: 606 SLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 664
           +L++  ++  I +  F+    ++ L +  N      P        L  L L  N+LS   
Sbjct: 75  NLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133

Query: 665 PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQV 724
                N   L  + M  N+LE      F    SLQ L +S N ++    S     S+   
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI--PSLFHA 191

Query: 725 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 784
           ++S N+L       T     ++  LD S+N +N  +        +L+ L L HNNL  + 
Sbjct: 192 NVSYNLLS------TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DT 241

Query: 785 PIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGP 840
              L     L  +DLS N L  ++   F        L+ S N   + +   +        
Sbjct: 242 A-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP------- 293

Query: 841 QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNL 900
                                      +  L  LDLS N L+ H+        R++ L L
Sbjct: 294 ---------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325

Query: 901 SHNNLTGTIPLTFSNLRHIESLDLSYNKLS 930
            HN++  T+    S    +++L LS+N   
Sbjct: 326 DHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  123 bits (310), Expect = 3e-30
 Identities = 66/371 (17%), Positives = 133/371 (35%), Gaps = 41/371 (11%)

Query: 67  LSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKL 126
           L+  K +    +  +        DSF  +E+L+++  +I+ +         +    ++KL
Sbjct: 44  LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEI--DTYA--FAYAHTIQKL 98

Query: 127 DLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVE 186
            +  N            +  LT L L  N L  S+    F +   L  L +++N ++ +E
Sbjct: 99  YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIE 157

Query: 187 VSRGYRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHN 245
               ++    L++L LS       N+L    +   PSL   ++  N  +        L  
Sbjct: 158 -DDTFQATTSLQNLQLSS------NRLTHVDLSLIPSLFHANVSYNLLS-------TLAI 203

Query: 246 FTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMR 305
              +E L    S   I++++    +   L  L +     N +       ++  L  +D+ 
Sbjct: 204 PIAVEELDA--SHNSINVVRG--PVNVELTILKLQH---NNLTDTAWLLNYPGLVEVDLS 256

Query: 306 FARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR 365
           +  +      +      M  L+ L +S      N    L+    P+  L+ L + +N L 
Sbjct: 257 YNEL---EKIMYHPFVKMQRLERLYISN-----NRLVALNLYGQPIPTLKVLDLSHNHLL 308

Query: 366 GSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNH 425
             +         L  L +  N +  ++  S    L     L LS+N +          N 
Sbjct: 309 -HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLK---NLTLSHNDWDCNSLRALFRNV 363

Query: 426 SKLKIFDAKNN 436
           ++  + DA  +
Sbjct: 364 ARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  121 bits (306), Expect = 9e-30
 Identities = 79/422 (18%), Positives = 161/422 (38%), Gaps = 66/422 (15%)

Query: 2   LDLSGNAFNNNVLSSLA--RLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKID 59
            D+  +    +V        L++ + +   ++ +   +    LDS R +E L++   +I+
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE 82

Query: 60  KFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSR 119
                                    D   F   + ++ L M  N I  L  P  +     
Sbjct: 83  -----------------------EIDTYAFAYAHTIQKLYMGFNAIRYL--PPHV--FQN 115

Query: 120 LSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND 179
           +  L  L L  N  ++           LT+L +S+N L+  I+   F + ++L+ L ++ 
Sbjct: 116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSS 174

Query: 180 NEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTT 239
           N + +V++S     +  L   ++S         LL ++    ++  L    N+       
Sbjct: 175 NRLTHVDLS----LIPSLFHANVS-------YNLLSTLAIPIAVEELDASHNSI-----N 218

Query: 240 TQELHNFTNLEYLTLDDSSL-HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKS 298
                    L  L L  ++L   + L +    +P L  + +S  E+   +    F   + 
Sbjct: 219 VVRGPVNVELTILKLQHNNLTDTAWLLN----YPGLVEVDLSYNELE-KIMYHPFVKMQR 273

Query: 299 LEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELY 358
           LE L +   R+      L + G+ +P+LK L LS      N    +++       L+ LY
Sbjct: 274 LERLYISNNRL----VALNLYGQPIPTLKVLDLSH-----NHLLHVERNQPQFDRLENLY 324

Query: 359 IDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVS 418
           +D+N +  +L   L+   +L+ L +S N    +   +   ++     +  ++ H +I   
Sbjct: 325 LDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARP-AVDDADQHCKIDYQ 380

Query: 419 LE 420
           LE
Sbjct: 381 LE 382

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (297), Expect = 1e-28
 Identities = 74/462 (16%), Positives = 147/462 (31%), Gaps = 100/462 (21%)

Query: 344 LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 403
           +D  L       +++ID         +      + +I+    + +   + ++ L     +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 404 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNY 463
           E L L++      +          ++      N I       H       L  L L  N 
Sbjct: 72  ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERND 128

Query: 464 GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIH 523
                                     +   P  +  N  KL  L + N++L         
Sbjct: 129 --------------------------LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162

Query: 524 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 583
           +   L+ L +S+N    H+ +    ++PSL + N+S N L     S+    I ++ LD S
Sbjct: 163 ATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELDAS 213

Query: 584 NNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 643
           +N +   +   +    V L  L L +N+L     + + +   L  + L  N     +   
Sbjct: 214 HNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 267

Query: 644 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 703
             K   L+ LY++NN L                           + +    + +L++LD+
Sbjct: 268 FVKMQRLERLYISNNRLVA-------------------------LNLYGQPIPTLKVLDL 302

Query: 704 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 763
           S N++   +                                 L  L L +N +  ++   
Sbjct: 303 SHNHLL-HVER------------------------NQPQFDRLENLYLDHNSIV-TLK-- 334

Query: 764 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 805
           +     L +L L+HN+ +      L     +    + D + H
Sbjct: 335 LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (295), Expect = 3e-28
 Identities = 62/319 (19%), Positives = 116/319 (36%), Gaps = 27/319 (8%)

Query: 640 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 699
           I  +L        ++++              L   + +    + +             ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 700 ILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 758
           +L+++D  I       F    +I+++++  N +   L    F N   L  L L  N L+ 
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 759 SIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-TT 816
           S+P  I     +L+ L++++NNLE            LQ L LS N L  +  S   +   
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH 190

Query: 817 LHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLD 875
            + SYN  S+            S         I  +            +G V   L  L 
Sbjct: 191 ANVSYNLLSTLAIPIAVEELDASH------NSINVV------------RGPVNVELTILK 232

Query: 876 LSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 935
           L  N L       + N   +  ++LS+N L   +   F  ++ +E L +S N+L   +  
Sbjct: 233 LQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNL 289

Query: 936 QLVDLNTLAIFIVAYNNLS 954
               + TL +  +++N+L 
Sbjct: 290 YGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  103 bits (258), Expect = 1e-23
 Identities = 71/401 (17%), Positives = 140/401 (34%), Gaps = 81/401 (20%)

Query: 285 NGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRIL 344
             V  G       + + +  + + +         + +S   ++ L+L+   +      I 
Sbjct: 33  QDVYFGFEDITLNNQKIVTFKNSTM---RKLPAALLDSFRQVELLNLNDLQI----EEID 85

Query: 345 DQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIE 404
                    +Q+LY+  N +R   P    N   L +L +  N L+ S+      +   + 
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT 144

Query: 405 ELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYG 464
            L +SNN+      +E                          +      L++L LSSN  
Sbjct: 145 TLSMSNNNLE---RIED------------------------DTFQATTSLQNLQLSSN-- 175

Query: 465 DSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHS 524
                              L+H+  +   P+        L    +  + L+      +  
Sbjct: 176 ------------------RLTHV-DLSLIPS--------LFHANVSYNLLST-----LAI 203

Query: 525 HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN 584
              +  LD S+N+    +    G +   L    +  N L  +  +   N   L  +DLS 
Sbjct: 204 PIAVEELDASHNSIN-VVR---GPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSY 257

Query: 585 NKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSL 644
           N+L  +I  H  +    LE L +SNN L   +      +  L+ L L  NH +  + ++ 
Sbjct: 258 NELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 314

Query: 645 SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 685
            +   L+ LYL++N++   +   L     L+++ +  N  +
Sbjct: 315 PQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  100 bits (252), Expect = 8e-23
 Identities = 67/343 (19%), Positives = 119/343 (34%), Gaps = 48/343 (13%)

Query: 93  NNLEVLDMSGNEIDNL--VVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSL 150
           N           ID     V  G E ++ L+  K +  + +       + +     +  L
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74

Query: 151 HLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDG 210
           +L+   ++  ID   F     +++L +  N I  +      + +  L  L L        
Sbjct: 75  NLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLE------R 126

Query: 211 NKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD---SSLHISL 263
           N L     G F   P L TL + +NN       T      T+L+ L L     + + +SL
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT--FQATTSLQNLQLSSNRLTHVDLSL 184

Query: 264 LQSIGSIF------------PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL 311
           + S+                 +++ L  S   +N V           L  L ++   +  
Sbjct: 185 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTD 240

Query: 312 NTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWC 371
                     + P L  + LS + L     +I+      +  L+ LYI NN L  +L   
Sbjct: 241 TAWL-----LNYPGLVEVDLSYNEL----EKIMYHPFVKMQRLERLYISNNRLV-ALNLY 290

Query: 372 LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 414
                +L++LD+S N L   +  +       +E L L +N   
Sbjct: 291 GQPIPTLKVLDLSHNHLL-HVERN-QPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 27/201 (13%), Positives = 62/201 (30%), Gaps = 39/201 (19%)

Query: 759 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN---- 814
            I   +        +++     +     +   LN  +++   ++ +  L  +  D+    
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 815 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 874
             L+ +                          +I EI  +                +  L
Sbjct: 72  ELLNLNDL------------------------QIEEIDTYAFAY---------AHTIQKL 98

Query: 875 DLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 933
            +  N +  ++PP +  N+  +  L L  N+L+      F N   + +L +S N L    
Sbjct: 99  YMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157

Query: 934 PRQLVDLNTLAIFIVAYNNLS 954
                   +L    ++ N L+
Sbjct: 158 DDTFQATTSLQNLQLSSNRLT 178

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  131 bits (333), Expect = 1e-33
 Identities = 53/393 (13%), Positives = 104/393 (26%), Gaps = 81/393 (20%)

Query: 550 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 609
                      +                   D +         +       N +  + + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTG 65

Query: 610 NSLKGHIFS-RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWL 668
            +LK         +      L L       + P    + S L+ + ++   L  ++P  +
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 669 GNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 728
               GL+ + + +N L   +P     L+ L+ L I        LP               
Sbjct: 124 QQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASG----- 177

Query: 729 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL 788
                           +L +L L +  +  S+P  I  L  L  L + ++ L   +   +
Sbjct: 178 ----------EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI 225

Query: 789 CRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI 848
             L +L+ LDL         P  F                                    
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGG---------------------------------- 251

Query: 849 LEIFEFTTKNIAYAYQGRVLSLLAGLDLS-CNKLVGHIPPQIGNLTRIQTLNLSHNNLTG 907
                               + L  L L  C+ L+  +P  I  LT+++ L+L       
Sbjct: 252 -------------------RAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 908 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL 940
            +P   + L     + +  +  +     + V  
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  120 bits (302), Expect = 1e-29
 Identities = 56/329 (17%), Positives = 104/329 (31%), Gaps = 27/329 (8%)

Query: 522 IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLD 581
            H       L    +         +          + +             N    Q   
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRW----HSAWRQANSNNPQIET 62

Query: 582 LSNNKLTGEIPDHLAMCCV-NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEI 640
            +   L     D L          L L +  L      + F L +L+ + ++    + E+
Sbjct: 63  RTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 641 PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHI---------VMPKNHLEGPIPVE 691
           P ++ + + L+ L L  N L   +P  + +L  L+ +          +P+         E
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 692 FCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLD 750
              L +LQ L +    I  SLP+    L ++K + +  + L          +   L  LD
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPA--IHHLPKLEELD 235

Query: 751 LSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPS 810
           L       + P    G + L  L L   +    +P+ + RL QL+ LDL        +PS
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

Query: 811 CFDN----TTLHESYNNNSSPDKPFKTSF 835
                     +    +  +  D+    + 
Sbjct: 296 LIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (278), Expect = 2e-26
 Identities = 65/382 (17%), Positives = 108/382 (28%), Gaps = 85/382 (22%)

Query: 594 HLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL 653
           H        E L    ++        +   +          H       S    ++ +  
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIE 61

Query: 654 YLNNNNLSGKIPRWLGNLK--GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS 711
                 L       L +    G   + +    L    P +  RL  LQ + I    +   
Sbjct: 62  TRTGRALK-ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 712 LPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS 771
           LP                              + L TL L+ N L  ++P  I  L++L 
Sbjct: 119 LPDTM------------------------QQFAGLETLTLARNPLR-ALPASIASLNRLR 153

Query: 772 HLNLAHNNLEGEVPIQLCR---------LNQLQLLDLSDNNLHGLIPSCFDN----TTLH 818
            L++       E+P  L           L  LQ L L    +  L P+   N     +L 
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLK 212

Query: 819 ESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 877
              +  S+          +I                              L  L  LDL 
Sbjct: 213 IRNSPLSALGP-------AIHH----------------------------LPKLEELDLR 237

Query: 878 CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL 937
               + + PP  G    ++ L L   +   T+PL    L  +E LDL       ++P  +
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

Query: 938 VDLNTLAIFIVAYNNLSGKIPE 959
             L    I +V   +L  ++ +
Sbjct: 298 AQLPANCIILV-PPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (271), Expect = 1e-25
 Identities = 56/361 (15%), Positives = 106/361 (29%), Gaps = 57/361 (15%)

Query: 366 GSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHL-TSIEELR-LSNNHFRIPVSLEPLF 423
           GS      +++    L            S+ L      + + +   N       S     
Sbjct: 2   GSSHHHHHHSSGRENLYFQ--------GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA 53

Query: 424 NHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAE 483
           N +  +I       +    +     T      +L L S                      
Sbjct: 54  NSNNPQIETRTGRALKATADLLEDATQP-GRVALELRSVP-------------------- 92

Query: 484 LSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP--IHSHKRLRFLDVSNNNFQGH 541
                 + +FP+      + L+ + +    L     LP  +     L  L ++ N  +  
Sbjct: 93  ------LPQFPDQA-FRLSHLQHMTIDAAGLM---ELPDTMQQFAGLETLTLARNPLR-A 141

Query: 542 IPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF---------LQFLDLSNNKLTGEIP 592
           +P  I   L  L   +I        +P    +            LQ L L    +   +P
Sbjct: 142 LPASIAS-LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLP 199

Query: 593 DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKG 652
             +A    NL+ L + N+ L   +   I  L  L  L L G   +   P      + LK 
Sbjct: 200 ASIANL-QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257

Query: 653 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL 712
           L L + +    +P  +  L  L+ + +        +P    +L +  I+ +  +  +   
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

Query: 713 P 713
            
Sbjct: 318 Q 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  104 bits (261), Expect = 3e-24
 Identities = 48/328 (14%), Positives = 89/328 (27%), Gaps = 62/328 (18%)

Query: 637 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 696
           +G         S  + LY   +         L   +   +    + H            +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSN 56

Query: 697 SLQILDISDNNISGSLPSCFYPLSIKQV---HLSKNMLHGQLKE--GTFFNCSSLVTLDL 751
           + QI   +   +  +        +        L        L +     F  S L  + +
Sbjct: 57  NPQIETRTGRALK-ATADLLEDATQPGRVALELRSV----PLPQFPDQAFRLSHLQHMTI 111

Query: 752 SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSC 811
               L   +PD +   + L  L LA N L   +P  +  LN+L+ L +        +P  
Sbjct: 112 DAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP 169

Query: 812 FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 871
             +T     +                                              L  L
Sbjct: 170 LASTDASGEHQG--------------------------------------------LVNL 185

Query: 872 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 931
             L L    +   +P  I NL  +++L + ++ L+  +     +L  +E LDL       
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR 243

Query: 932 KIPRQLVDLNTLAIFIVAYNNLSGKIPE 959
             P        L   I+   +    +P 
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPL 271

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (253), Expect = 3e-23
 Identities = 58/345 (16%), Positives = 111/345 (32%), Gaps = 38/345 (11%)

Query: 325 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVS 384
             + L   GST         D     L+  Q  Y  + +      W  AN+ + +I   +
Sbjct: 13  GRENLYFQGST---ALRPYHDV----LSQWQRHYNADRNRW-HSAWRQANSNNPQIETRT 64

Query: 385 FNQLTGSISSSPLVHLTSIEELRLSNNHF-RIPVSLEPLFNHSKLKIFDAKNNEINGEIN 443
              L  +              L L +    + P   +  F  S L+        +    +
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQFP---DQAFRLSHLQHMTIDAAGLMELPD 121

Query: 444 ESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTK 503
                     L++L+L+ N       P  +   + L+E  +     + E P  L   +  
Sbjct: 122 TMQQFA---GLETLTLARN--PLRALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 504 LEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 563
            E   LVN                L+ L +     +  +P  I + L +L    I  + L
Sbjct: 177 GEHQGLVN----------------LQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPL 218

Query: 564 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSL 623
             ++  +  ++  L+ LDL         P         L+ L L + S    +   I  L
Sbjct: 219 S-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRL 276

Query: 624 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWL 668
             L  L L G   +  +P  +++  +   + +   +L  ++ +  
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILV-PPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.1 bits (245), Expect = 3e-22
 Identities = 50/346 (14%), Positives = 111/346 (32%), Gaps = 53/346 (15%)

Query: 351 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 410
            +  + LY   +         L+        D +        S+    +  + +    + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH-----SAWRQANSNNPQIETRTG 65

Query: 411 NHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTF 469
              +     LE           + ++  +    +++  L+    L+ +++ +        
Sbjct: 66  RALKATADLLEDA-TQPGRVALELRSVPLPQFPDQAFRLS---HLQHMTIDAAG------ 115

Query: 470 PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP--IHSHKR 527
                               + E P+  ++    LE L L  + L     LP  I S  R
Sbjct: 116 --------------------LMELPDT-MQQFAGLETLTLARNPLR---ALPASIASLNR 151

Query: 528 LRFLDVSNNNFQGHIPVEIGDI--------LPSLVYFNISMNALDGSIPSSFGNVIFLQF 579
           LR L +        +P  +           L +L    +    +  S+P+S  N+  L+ 
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210

Query: 580 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 639
           L + N+ L+  +   +      LE L L   +   +          L+ L+L+    +  
Sbjct: 211 LKIRNSPLS-ALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 640 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 685
           +P  + + + L+ L L       ++P  +  L     I++P +   
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.2 bits (227), Expect = 7e-20
 Identities = 71/383 (18%), Positives = 126/383 (32%), Gaps = 84/383 (21%)

Query: 16  SLARLSSLRSLYLSD-NRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLG 74
                S   +LY      L    D   L   +     D   N+          +  +   
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHD--VLSQWQRHYNADR--NRWHSAWRQANSNNPQIET 62

Query: 75  LSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCN 134
            +G   K T D+ E  +      L++    +     P   ++  RLS L+ + +      
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLPQF--P---DQAFRLSHLQHMTIDAA-GL 116

Query: 135 NSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN--------EIDNVE 186
             +  ++ + + L +L L+ N L+ ++      SL+ L EL I            + + +
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLR-AL-PASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 187 VSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNF 246
            S  ++GL  L+SL L   GIR          S P+                    + N 
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR----------SLPA-------------------SIANL 205

Query: 247 TNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 306
            NL+ L + +S L  +L  +I  + P L+ L + GC               +L +     
Sbjct: 206 QNLKSLKIRNSPLS-ALGPAIHHL-PKLEELDLRGC--------------TALRNY---- 245

Query: 307 ARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRG 366
                      I G     LK L L       ++   L   +  L  L++L +       
Sbjct: 246 ---------PPIFG-GRAPLKRLILKDC----SNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 367 SLPWCLANTTSLRILDVSFNQLT 389
            LP  +A   +  I+ V  +   
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.3 bits (217), Expect = 1e-18
 Identities = 58/282 (20%), Positives = 103/282 (36%), Gaps = 32/282 (11%)

Query: 14  LSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKG-LSKLKS 72
               A  ++ +    +   L+ + D+ E  +      L++    + +F      LS L+ 
Sbjct: 49  AWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQH 108

Query: 73  LGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN- 131
           + +   G     D      F  LE L ++ N +  L  P     ++ L++L++L +R   
Sbjct: 109 MTIDAAGLMELPD--TMQQFAGLETLTLARNPLRAL--P---ASIASLNRLRELSIRACP 161

Query: 132 --------LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 183
                   L +         L +L SL L    ++ S+ A    +L NL+ L I ++ + 
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA-SIANLQNLKSLKIRNSPL- 218

Query: 184 NVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ---SMGSFPSLNTLHLESNNFTATLTTT 240
              +      L KL+ LDL G        L       G    L  L L+  +   TL   
Sbjct: 219 -SALGPAIHHLPKLEELDLRGC-----TALRNYPPIFGGRAPLKRLILKDCSNLLTL--P 270

Query: 241 QELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGC 282
            ++H  T LE L L        L   I  + P+   + +   
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQL-PANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.5 bits (215), Expect = 3e-18
 Identities = 56/386 (14%), Positives = 104/386 (26%), Gaps = 70/386 (18%)

Query: 241 QELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLE 300
              H+ +  E L    S+        +   +    N   +                 +  
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRWH--------SAWRQANSN 56

Query: 301 HLDMRFARIALNTSFLQIIGE-SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 359
           +  +         +   ++ + + P    L L    L              L+HLQ + I
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTI 111

Query: 360 DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSL 419
           D   L   LP  +     L  L ++ N L  ++ +S +  L  + EL +           
Sbjct: 112 DAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLRELSIRAC-------- 160

Query: 420 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 479
                  +L         +    + S        L+SL L                    
Sbjct: 161 ------PELTELP---EPL-ASTDASGEHQGLVNLQSLRLEWT----------------- 193

Query: 480 KEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP--IHSHKRLRFLDVSNNN 537
                     I   P   + N   L+ L + N  L+    L   IH   +L  LD+    
Sbjct: 194 ---------GIRSLPAS-IANLQNLKSLKIRNSPLSA---LGPAIHHLPKLEELDLRGCT 240

Query: 538 FQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAM 597
              + P   G     L    +   +   ++P     +  L+ LDL        +P  +A 
Sbjct: 241 ALRNYPPIFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

Query: 598 CCVNLEFLSLSNNSLKGHIFSRIFSL 623
                  + +  +        R  + 
Sbjct: 300 -LPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 37/178 (20%)

Query: 10  NNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSK 69
           + +       L +L+SL L    +  S+    + +L++L+ L I  + +        +  
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLP-ASIANLQNLKSLKIRNSPLSAL--GPAIHH 227

Query: 70  LKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSG-NEIDNLVVPQGLERLSRLSKLKKLDL 128
           L                        LE LD+ G   + N   P         + LK+L L
Sbjct: 228 LP----------------------KLEELDLRGCTALRNY--P---PIFGGRAPLKRLIL 260

Query: 129 RGNLCNN--SILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDN 184
           +   C+N  ++   + RL+ L  L L   +    +       L     + +  +    
Sbjct: 261 KD--CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL-PSLIAQLPANCIILVPPHLQAQ 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  128 bits (325), Expect = 8e-33
 Identities = 63/300 (21%), Positives = 118/300 (39%), Gaps = 19/300 (6%)

Query: 545 EIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF 604
           EI           ++ ++L  ++ S   +   ++ LDLS N L+ +I          LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 605 LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 664
           L+LS+N L       + SL  LR L L  N+      Q L    S++ L+  NNN+S ++
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 665 PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG-SLPSCFYPL-SIK 722
                  +G ++I +  N +     ++      +Q LD+  N I   +         +++
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 723 QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 782
            ++L  N ++  +K       + L TLDLS N L   +       + ++ ++L +N L  
Sbjct: 173 HLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 783 EVPIQLCRLNQLQLLDLSDNNLHGL-IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQ 841
            +   L     L+  DL  N  H   +   F      ++    +      +     + P 
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  116 bits (292), Expect = 2e-28
 Identities = 56/365 (15%), Positives = 116/365 (31%), Gaps = 57/365 (15%)

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 698
           EI Q+ +     K   + +++L   +     +   ++ + +  N L      +      L
Sbjct: 4   EIKQNGN---RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 699 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 758
           ++L++S N +           +++ + L+ N +             S+ TL  + N ++ 
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS- 112

Query: 759 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN---- 814
            +           ++ LA+N +     +     +++Q LDL  N +  +  +        
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 815 -TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 873
              L+  YN                         I ++                 + L  
Sbjct: 171 LEHLNLQYN------------------------FIYDVKGQVV-----------FAKLKT 195

Query: 874 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 933
           LDLS NKL   + P+  +   +  ++L +N L   I       +++E  DL  N      
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 934 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMS 993
            R         +  VA   +  K+     +  T     + G      LP P    L  + 
Sbjct: 254 LRDFF-SKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALG 311

Query: 994 EASTS 998
                
Sbjct: 312 HHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (273), Expect = 6e-26
 Identities = 51/293 (17%), Positives = 102/293 (34%), Gaps = 28/293 (9%)

Query: 120 LSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND 179
            ++ K   +  +    ++ S      ++  L LS N L   I A +    + LE L+++ 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 180 NEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTT 239
           N +           L  L++LDL+       N  +Q +   PS+ TLH  +NN      +
Sbjct: 68  NVLYETL---DLESLSTLRTLDLN------NNY-VQELLVGPSIETLHAANNNI-----S 112

Query: 240 TQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSL 299
                     + + L ++ + +      G     ++ L +   E++ V   +      +L
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 300 EHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 359
           EHL++++  I         +      LK L LS      N    +       A +  + +
Sbjct: 172 EHLNLQYNFI---YDVKGQV--VFAKLKTLDLSS-----NKLAFMGPEFQSAAGVTWISL 221

Query: 360 DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 412
            NN L   +   L  + +L   D+  N                ++ +      
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (271), Expect = 1e-25
 Identities = 57/351 (16%), Positives = 119/351 (33%), Gaps = 72/351 (20%)

Query: 351 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 410
               +   + ++ L+ +L     +  +++ LD+S N L+  IS++ L   T +E L LS+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 411 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 470
           N          L + S L+  D  NN +         L     +++L  ++N        
Sbjct: 68  NVLY---ETLDLESLSTLRTLDLNNNYVQ-------ELLVGPSIETLHAANN-------- 109

Query: 471 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRF 530
                        +S +                                      +  + 
Sbjct: 110 ------------NISRV---------------------------------SCSRGQGKKN 124

Query: 531 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG-SIPSSFGNVIFLQFLDLSNNKLTG 589
           + ++NN       ++ G     + Y ++ +N +D  +      +   L+ L+L  N +  
Sbjct: 125 IYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 590 EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 649
           ++   +      L+ L LS+N L   +     S   + W+ L  N  V  I ++L    +
Sbjct: 183 DVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238

Query: 650 LKGLYLNNNNLS-GKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 699
           L+   L  N    G +  +    + +Q +             E C + +L 
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  107 bits (270), Expect = 1e-25
 Identities = 59/355 (16%), Positives = 124/355 (34%), Gaps = 56/355 (15%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
             ++ ++    + S      +++ L LS N L   I   +L     LE L++  N +   
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLY-- 71

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
                                  +  + +S + L  LD++ N +         + L    
Sbjct: 72  -----------------------ETLDLESLSTLRTLDLNNNYV---------QELLVGP 99

Query: 122 KLKKLDLRGNLCNNSILS-SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 180
            ++ L       NN+I   S +R     +++L++N +   +   +    S ++ LD+  N
Sbjct: 100 SIETLHAA----NNNISRVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLN 154

Query: 181 EIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTT 240
           EID V  +        L+ L+L    I D    ++    F  L TL L SN         
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYD----VKGQVVFAKLKTLDLSSNKLA---FMG 207

Query: 241 QELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLE 300
            E  +   + +++L ++ L   + +++     +L++  + G   +       F   + ++
Sbjct: 208 PEFQSAAGVTWISLRNNKLV-LIEKALRF-SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

Query: 301 HLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQ 355
            +  +          L    E   ++  L   G+    +        L  L H  
Sbjct: 266 TVAKQ------TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHH 314

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (266), Expect = 5e-25
 Identities = 50/328 (15%), Positives = 107/328 (32%), Gaps = 49/328 (14%)

Query: 620 IFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM 679
             +    +   +  +     +        ++K L L+ N LS      L     L+ + +
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 680 PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGT 739
             N L   +      L +L+ LD+++N +   L       SI+ +H + N +  ++    
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGP---SIETLHAANNNIS-RVSCSR 118

Query: 740 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG-EVPIQLCRLNQLQLLD 798
                    + L+ N +           S++ +L+L  N ++           + L+ L+
Sbjct: 119 G---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 799 LSDNNLHGLIPSCFDN--TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTT 856
           L  N ++ +          TL  S N  +     F++                       
Sbjct: 176 LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQS----------------------- 212

Query: 857 KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT-GTIPLTFSN 915
                       + +  + L  NKLV  I   +     ++  +L  N    GT+   FS 
Sbjct: 213 -----------AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 916 LRHIESLDLSYNKLSGKIPRQLVDLNTL 943
            + ++++     K       +   + TL
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (259), Expect = 4e-24
 Identities = 61/404 (15%), Positives = 113/404 (27%), Gaps = 94/404 (23%)

Query: 374 NTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDA 433
           N    +I  V+ + L     +S      +++EL LS N       +              
Sbjct: 8   NGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLS---QISA------------ 51

Query: 434 KNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEF 493
                     +    T   +L+ L+LSSN                        +    + 
Sbjct: 52  ---------ADLAPFT---KLELLNLSSN-----------------------VLYETLDL 76

Query: 494 PNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSL 553
                E+ + L  L L N+ +       +     +  L  +NNN    +           
Sbjct: 77  -----ESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCSR---GQGK 122

Query: 554 VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK 613
               ++ N +        G    +Q+LDL  N++       LA     LE L+L  N + 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 614 GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG 673
             +  ++     L+ L L  N     +       + +  + L NN L             
Sbjct: 183 -DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL----------- 228

Query: 674 LQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG 733
                         I        +L+  D+  N         F+  + +   ++K  +  
Sbjct: 229 --------------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK- 273

Query: 734 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH 777
           +L       C+                  + D L  L H +  H
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.2 bits (214), Expect = 3e-18
 Identities = 54/307 (17%), Positives = 111/307 (36%), Gaps = 42/307 (13%)

Query: 166 FDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ----SMGSFP 221
             + +  +   + D+ +     S   +    +K LDLS      GN L Q     +  F 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLR-QSAWNVKELDLS------GNPLSQISAADLAPFT 58

Query: 222 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL-HISLLQSI------------- 267
            L  L+L SN     L  T +L + + L  L L+++ +  + +  SI             
Sbjct: 59  KLELLNLSSNV----LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV 114

Query: 268 -GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSL 326
             S     KN+ ++  ++   L          +++LD++   I    +F ++   S  +L
Sbjct: 115 SCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEID-TVNFAELAA-SSDTL 171

Query: 327 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFN 386
           ++L+L       N    +   +   A L+ L + +N L   +     +   +  + +  N
Sbjct: 172 EHLNLQY-----NFIYDVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224

Query: 387 QLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESH 446
           +L   I  + L    ++E   L  N F      +    + +++    +  +     NE  
Sbjct: 225 KLV-LIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 447 SLTPKFQ 453
              P   
Sbjct: 283 CTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 49/278 (17%), Positives = 94/278 (33%), Gaps = 27/278 (9%)

Query: 244 HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD 303
            N    +   + DSSL    L S+     ++K L +SG  ++ + +      F  LE L+
Sbjct: 7   QNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLELLN 64

Query: 304 MRFARIALNTSFLQIIGESMPSLKYLSLSG---STLGTNSS---------RILDQGLCPL 351
           +    +           ES+ +L+ L L+      L    S          I        
Sbjct: 65  LSSNVLYETLDL-----ESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119

Query: 352 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 411
              + +Y+ NN +           + ++ LD+  N++     +       ++E L L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 412 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 471
                  ++     +KLK  D  +N++     E  S      +  +SL +N    V   K
Sbjct: 180 FIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA---GVTWISLRNN--KLVLIEK 231

Query: 472 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL 509
            L     L+  +L                N +++ +  
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 6e-07
 Identities = 15/70 (21%), Positives = 28/70 (40%)

Query: 885 IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLA 944
           I     N  R +   ++ ++L   +     +  +++ LDLS N LS      L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 945 IFIVAYNNLS 954
           +  ++ N L 
Sbjct: 62  LLNLSSNVLY 71

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  126 bits (319), Expect = 6e-31
 Identities = 100/581 (17%), Positives = 177/581 (30%), Gaps = 138/581 (23%)

Query: 351 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 410
              LQE    +++L   +P    N  S      ++++   +           +   RL +
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRD 67

Query: 411 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPK-FQLKSLSLSSNYGDSVTF 469
              R            +    +  N  +        SL      L+SL  S N       
Sbjct: 68  CLDR------------QAHELELNNLGL-------SSLPELPPHLESLVASCN------- 101

Query: 470 PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLR 529
                               + E P         L+ L + N++L     LP      L 
Sbjct: 102 -------------------SLTELPELP----QSLKSLLVDNNNLKALSDLP----PLLE 134

Query: 530 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 589
           +L VSNN  +  +P E+ +    L   ++  N+L   +P    +   L+F+   NN+L  
Sbjct: 135 YLGVSNNQLE-KLP-ELQN-SSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQLE- 186

Query: 590 EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 649
           E+P+        L  +   NNSLK  +        +L  ++   N    E    L     
Sbjct: 187 ELPELQN--LPFLTAIYADNNSLK-KLPD---LPLSLESIVAGNNIL--EELPELQNLPF 238

Query: 650 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 709
           L  +Y +NN L   +P    +L+ L    +  N+L   +P     L  L + +   + +S
Sbjct: 239 LTTIYADNNLLK-TLPDLPPSLEALN---VRDNYLTD-LPELPQSLTFLDVSENIFSGLS 293

Query: 710 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 769
              P+      +  ++ S N +             SL  L++S N L   +P       +
Sbjct: 294 ELPPN------LYYLNASSNEI-----RSLCDLPPSLEELNVSNNKLI-ELPALP---PR 338

Query: 770 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDK 829
           L  L  + N+L  EVP        L+ L +  N L            L  + +    P+ 
Sbjct: 339 LERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL 394

Query: 830 PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 889
           P                                        L  L +  N L    P   
Sbjct: 395 PQN--------------------------------------LKQLHVETNPLR-EFPDIP 415

Query: 890 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 930
            ++     L ++   +             +E     ++   
Sbjct: 416 ESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  120 bits (303), Expect = 8e-29
 Identities = 92/496 (18%), Positives = 162/496 (32%), Gaps = 101/496 (20%)

Query: 311 LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW 370
              +  ++          L L+   L +              HL+ L    N L   LP 
Sbjct: 58  REMAVSRLRDCLDRQAHELELNNLGLSSLPELP--------PHLESLVASCNSLT-ELPE 108

Query: 371 CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKI 430
              +  SL + + +   L+             +E L +SNN       L  L N S LKI
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLE---KLPELQNSSFLKI 157

Query: 431 FDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMI 490
            D  NN +    +   SL        ++  +N                    +L  +  +
Sbjct: 158 IDVDNNSLKKLPDLPPSLE------FIAAGNN--------------------QLEELPEL 191

Query: 491 GEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL 550
              P         L  +Y  N+SL     LP+     L  +   NN        E+ + L
Sbjct: 192 QNLPF--------LTAIYADNNSLKKLPDLPLS----LESIVAGNNIL--EELPELQN-L 236

Query: 551 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 610
           P L       N L  ++P    +   L+ L++ +N LT ++P+       +L FL +S N
Sbjct: 237 PFLTTIYADNNLL-KTLPDLPPS---LEALNVRDNYLT-DLPELPQ----SLTFLDVSEN 287

Query: 611 SLKGHIFSRIFSL-RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 669
                  S +  L  NL +L    N     +        SL+ L ++NN L  ++P    
Sbjct: 288 IF-----SGLSELPPNLYYLNASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPALPP 337

Query: 670 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 729
            L   + ++   NHL   +P       +L+ L +  N +    P     +   +++    
Sbjct: 338 RL---ERLIASFNHLAE-VPEL---PQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLA 389

Query: 730 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 789
            +             +L  L +  N L    PD       +  L +    +         
Sbjct: 390 EV--------PELPQNLKQLHVETNPLR-EFPDIP---ESVEDLRMNSERVVDPYEFAHE 437

Query: 790 RLNQLQLLDLSDNNLH 805
             ++L+      ++ H
Sbjct: 438 TTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  113 bits (285), Expect = 1e-26
 Identities = 116/559 (20%), Positives = 200/559 (35%), Gaps = 115/559 (20%)

Query: 398 VHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKS 456
           V  T ++E    +++   +PV      N      +    +E        +    +  +  
Sbjct: 8   VSNTFLQEPLRHSSNLTEMPVEA---ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 457 LSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAG 516
           L    +               +  E EL+++  +   P         LE L    +SL  
Sbjct: 65  LRDCLD--------------RQAHELELNNLG-LSSLPELP----PHLESLVASCNSLT- 104

Query: 517 PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF 576
              LP    + L+ L V NNN +      + D+ P L Y  +S N L+  +P    N  F
Sbjct: 105 --ELP-ELPQSLKSLLVDNNNLK-----ALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSF 154

Query: 577 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 636
           L+ +D+ NN L  ++PD       +LEF++  NN L+      + +L  L  +  + N  
Sbjct: 155 LKIIDVDNNSLK-KLPDLPP----SLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSL 207

Query: 637 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 696
             ++P       SL+ +   NN L       L NL  L  I    N L+  +P       
Sbjct: 208 K-KLPDLPL---SLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKT-LPDLPP--- 257

Query: 697 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 756
           SL+ L++ DN ++  LP    P S+  + +S+N+    L E       +L  L+ S N +
Sbjct: 258 SLEALNVRDNYLT-DLPEL--PQSLTFLDVSENIFS-GLSE----LPPNLYYLNASSNEI 309

Query: 757 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 816
             S+ D       L  LN+++N L  E+P       +L+ L  S N+L  +     +   
Sbjct: 310 R-SLCD---LPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLAEVPELPQNLKQ 361

Query: 817 LHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLD 875
           LH  YN     PD P                                            D
Sbjct: 362 LHVEYNPLREFPDIPESVE----------------------------------------D 381

Query: 876 LSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 935
           L  N  +  +P    NL   + L++  N L    P    ++   E L ++  ++      
Sbjct: 382 LRMNSHLAEVPELPQNL---KQLHVETNPLR-EFPDIPESV---EDLRMNSERVVDPYEF 434

Query: 936 QLVDLNTLAIFIVAYNNLS 954
                + L   +  +++  
Sbjct: 435 AHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  105 bits (265), Expect = 4e-24
 Identities = 73/374 (19%), Positives = 124/374 (33%), Gaps = 75/374 (20%)

Query: 568 PSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLR 627
           P +  N  FLQ     ++ LT E+P        +      + +  + +        R + 
Sbjct: 5   PRNVSN-TFLQEPLRHSSNLT-EMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 628 WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP 687
              L                     L LNN  LS  +P    +L   + +V   N L   
Sbjct: 62  VSRLRDC-----------LDRQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-E 105

Query: 688 IPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLV 747
           +P     L SL + + +   +S   P       ++ + +S N L  +L E    N S L 
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPL------LEYLGVSNNQLE-KLPE--LQNSSFLK 156

Query: 748 TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 807
            +D+  N L   +PD       L  +   +N LE E+P +L  L  L  +   +N+L  L
Sbjct: 157 IIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKL 210

Query: 808 IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV 867
                   ++    N              +                              
Sbjct: 211 PDLPLSLESIVAGNNILEELP-------ELQN---------------------------- 235

Query: 868 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 927
           L  L  +    N L   +P    +L   + LN+  N LT  +P    +L  ++  +  ++
Sbjct: 236 LPFLTTIYADNNLLK-TLPDLPPSL---EALNVRDNYLT-DLPELPQSLTFLDVSENIFS 290

Query: 928 KLSGKIPRQLVDLN 941
            LS ++P  L  LN
Sbjct: 291 GLS-ELPPNLYYLN 303

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (251), Expect = 3e-22
 Identities = 84/476 (17%), Positives = 156/476 (32%), Gaps = 105/476 (22%)

Query: 15  SSLARLSSLRSLYLSDNRLEGSIDVKELD------------SLRDLEELDIGGNKIDKFM 62
                + S    Y + +  E +      +              R   EL++    +    
Sbjct: 28  VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-- 85

Query: 63  VSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERL----- 117
           + +    L+SL  S        +     S  +L V + +   + +L  P  LE L     
Sbjct: 86  LPELPPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNN 141

Query: 118 --------SRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSL 169
                      S LK +D+     NNS+        SL  +   +N L+   +  E  +L
Sbjct: 142 QLEKLPELQNSSFLKIIDVD----NNSLKKLPDLPPSLEFIAAGNNQLE---ELPELQNL 194

Query: 170 SNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL--LQSMGSFPSLNTLH 227
             L  +  ++N +  +           L+S+          N L  L  + + P L T++
Sbjct: 195 PFLTAIYADNNSLKKLPDL-----PLSLESIVAG------NNILEELPELQNLPFLTTIY 243

Query: 228 LESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGV 287
            ++N                +LE L + D+      L  +  +  SL  L +S    +G+
Sbjct: 244 ADNNLLKTLPDL------PPSLEALNVRDNY-----LTDLPELPQSLTFLDVSENIFSGL 292

Query: 288 LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQG 347
                     +L +L+     I       + + +  PSL+ L++S      N    L   
Sbjct: 293 SE-----LPPNLYYLNASSNEI-------RSLCDLPPSLEELNVSN-----NKLIELPAL 335

Query: 348 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 407
                 L+ L    N L   +P    N   L+ L V +N L       P     S+E+LR
Sbjct: 336 PP---RLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIP----ESVEDLR 383

Query: 408 LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPK-FQLKSLSLSSN 462
           ++++   +P           LK    + N +                ++ L ++S 
Sbjct: 384 MNSHLAEVPELP------QNLKQLHVETNPLR-------EFPDIPESVEDLRMNSE 426

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 95.8 bits (239), Expect = 7e-21
 Identities = 72/411 (17%), Positives = 149/411 (36%), Gaps = 75/411 (18%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L +  N  N   LS L     L  L +S+N+LE    + EL +   L+ +D+  N + K 
Sbjct: 116 LLVDNN--NLKALSDL--PPLLEYLGVSNNQLE---KLPELQNSSFLKIIDVDNNSLKK- 167

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
            +      L+ +       +   ++ E  +   L  +    N +  L             
Sbjct: 168 -LPDLPPSLEFIAAGNNQLE---ELPELQNLPFLTAIYADNNSLKKLP--------DLPL 215

Query: 122 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNE 181
            L+ +    N      L  +  L  LT+++  +N+L+ ++     D   +LE L++ DN 
Sbjct: 216 SLESIVAGNN--ILEELPELQNLPFLTTIYADNNLLK-TLP----DLPPSLEALNVRDNY 268

Query: 182 IDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQ 241
           + ++         + L  LD+S       N         P+L  L+  SN   +      
Sbjct: 269 LTDLPEL-----PQSLTFLDVS------ENIFSGLSELPPNLYYLNASSNEIRSLCD--- 314

Query: 242 ELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEH 301
                 +LE L + ++      L  + ++ P L+ L  S   +  V         ++L+ 
Sbjct: 315 ---LPPSLEELNVSNNK-----LIELPALPPRLERLIASFNHLAEVPEL-----PQNLKQ 361

Query: 302 LDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDN 361
           L + +         L+   +   S++ L ++           L +      +L++L+++ 
Sbjct: 362 LHVEYNP-------LREFPDIPESVEDLRMNSH---------LAEVPELPQNLKQLHVET 405

Query: 362 NDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 412
           N LR   P       S+  L ++  ++              +E+    ++H
Sbjct: 406 NPLR-EFPDIP---ESVEDLRMNSERVV-DPYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.9 bits (234), Expect = 4e-20
 Identities = 62/345 (17%), Positives = 120/345 (34%), Gaps = 56/345 (16%)

Query: 619 RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 678
           R  S   L+  L   ++   E+P       S    Y   +      P   G  + +    
Sbjct: 6   RNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 679 MPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEG 738
           +             C       L++++  +S SLP     L  + +  S N L  +L E 
Sbjct: 65  LRD-----------CLDRQAHELELNNLGLS-SLPELPPHL--ESLVASCNSLT-ELPEL 109

Query: 739 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLD 798
              +  SL+  + +   L+   P        L +L +++N LE ++P +L   + L+++D
Sbjct: 110 -PQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQNSSFLKIID 159

Query: 799 LSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFK----TSFSISGPQGSVEKKILEIFEF 854
           + +N+L  L         +    N      +       T+             + ++ + 
Sbjct: 160 VDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADN------NSLKKLPDL 213

Query: 855 TTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS 914
                           L  +    N L     P++ NL  + T+   +N L  T+P    
Sbjct: 214 -------------PLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP 257

Query: 915 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 959
           +L   E+L++  N L+  +P     L  L +    ++ LS   P 
Sbjct: 258 SL---EALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 22/149 (14%)

Query: 10  NNNVLSSL-ARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLS 68
           +NN L  L A    L  L  S N L   +     +  ++L++L +  N + +F       
Sbjct: 325 SNNKLIELPALPPRLERLIASFNHLA-EVP----ELPQNLKQLHVEYNPLREF--PDIPE 377

Query: 69  KLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDL 128
            ++ L ++             +   NL+ L +  N +     P   E       ++ L +
Sbjct: 378 SVEDLRMNS------HLAEVPELPQNLKQLHVETNPLREF--PDIPE------SVEDLRM 423

Query: 129 RGNLCNNSILSSVARLSSLTSLHLSHNIL 157
                 +    +      L      H+  
Sbjct: 424 NSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  126 bits (319), Expect = 1e-30
 Identities = 98/474 (20%), Positives = 166/474 (35%), Gaps = 33/474 (6%)

Query: 352 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 411
                L I  N +       + + + LRIL +S N++   +  S       +E L LS+N
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN 79

Query: 412 HFRIPVSLEPLFNHSKLKIFDAKNNEIN--GEINESHSLTPKFQLKSLSLSSNYGDSVTF 469
                +S  P      LK  D   N  +      E  +++   QLK L LS+ + +  + 
Sbjct: 80  KLVK-ISCHPT---VNLKHLDLSFNAFDALPICKEFGNMS---QLKFLGLSTTHLEKSSV 132

Query: 470 PKFLYHQHELKEAELSHIKMIGEFPNWL---------LENNTKLEFLYLVNDSLAGPFRL 520
               +         L       E P  L         +   T  EF ++++ S+     L
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192

Query: 521 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL 580
            + + K +   +  +        ++    L +L   NI                  + + 
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252

Query: 581 DLSNNKLTG----EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 636
            +SN KL G       D+       L    + ++              N+       +  
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 637 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE--GPIPVEFCR 694
                   SK S    L  +NN L+  +    G+L  L+ +++  N L+    I     +
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

Query: 695 LDSLQILDISDNNISGSLP--SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT-LDL 751
           + SLQ LDIS N++S       C +  S+  +++S N     L +  F      +  LDL
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN----ILTDTIFRCLPPRIKVLDL 428

Query: 752 SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 805
             N +  SIP  +  L  L  LN+A N L+        RL  LQ + L  N   
Sbjct: 429 HSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  118 bits (296), Expect = 1e-27
 Identities = 79/469 (16%), Positives = 161/469 (34%), Gaps = 41/469 (8%)

Query: 322 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 381
           S+  L+ L +S + +      +          L+ L + +N L   +      T +L+ L
Sbjct: 43  SLSKLRILIISHNRIQYLDISVFKF----NQELEYLDLSHNKLV-KISC--HPTVNLKHL 95

Query: 382 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE 441
           D+SFN            +++ ++ L LS  H     S+ P+ + +  K+         GE
Sbjct: 96  DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGET-YGE 153

Query: 442 INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN 501
             +   L       + SL   +  +  F   L                +    N  L N 
Sbjct: 154 KEDPEGLQ---DFNTESLHIVFPTNKEFHFILDV-------------SVKTVANLELSNI 197

Query: 502 TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 561
             +      +  L+   +L  +       L+     +   I +       ++ YF+IS  
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 562 ALDGSIPSSFGNVIF-----LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI 616
            L G +     +        L    + ++        ++     N+   + + +  +   
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 617 FSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG---NLKG 673
                 +     L    N     + ++    + L+ L L  N L  ++ +       +K 
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKS 375

Query: 674 LQHIVMPKNHLEGPIPVEFC-RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH 732
           LQ + + +N +        C    SL  L++S N ++ ++  C  P  IK + L  N + 
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIK 434

Query: 733 GQLKEGTFFNCSSLVTLDLSYNYLNGSIPD-WIDGLSQLSHLNLAHNNL 780
             + +       +L  L+++ N L  S+PD   D L+ L  + L  N  
Sbjct: 435 -SIPKQ-VVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  117 bits (294), Expect = 2e-27
 Identities = 105/541 (19%), Positives = 178/541 (32%), Gaps = 86/541 (15%)

Query: 145 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 204
              T L++S N +   +   +  SLS L  L I+ N I  +++S  ++  ++L+ LDLS 
Sbjct: 21  QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSH 78

Query: 205 VGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISL 263
                 NKL++ S     +L  L L  N F   L   +E  N + L++L L  + L  S 
Sbjct: 79  ------NKLVKISCHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSS 131

Query: 264 LQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESM 323
           +         L    +           +     +      +       N  F  I+  S+
Sbjct: 132 VLP----IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP-TNKEFHFILDVSV 186

Query: 324 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 383
            ++  L LS      N   +L+   C         +  N    +L        +L  ++ 
Sbjct: 187 KTVANLELS------NIKCVLEDNKCSYFLSILAKLQTNPKLSNL--------TLNNIET 232

Query: 384 SFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEIN 443
           ++N          LV  T++    +SN                             G+++
Sbjct: 233 TWNSFI---RILQLVWHTTVWYFSISNVKL-------------------------QGQLD 264

Query: 444 ESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTK 503
                     LK+LS+     D   FP                        +++ E  + 
Sbjct: 265 FRDFDYSGTSLKALSIHQVVSDVFGFP-----------------------QSYIYEIFSN 301

Query: 504 LEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 563
           +               L          LD SNN        E    L  L    + MN L
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQL 360

Query: 564 D--GSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF 621
                I      +  LQ LD+S N ++ +          +L  L++S+N L   IF  + 
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL- 419

Query: 622 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 681
               ++ L L  N     IP+ + K  +L+ L + +N L          L  LQ I +  
Sbjct: 420 -PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477

Query: 682 N 682
           N
Sbjct: 478 N 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  111 bits (279), Expect = 1e-25
 Identities = 84/465 (18%), Positives = 164/465 (35%), Gaps = 40/465 (8%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L++S N  +    S +  LS LR L +S NR++  +D+      ++LE LD+  NK+ K 
Sbjct: 26  LNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVKI 84

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
                   LK L LS   F      +EF + + L+ L +S   ++          +  ++
Sbjct: 85  S-CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS-------VLPIA 136

Query: 122 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNE 181
            L    +   L              L   +     +    +  EF  + ++    + + E
Sbjct: 137 HLNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNK-EFHFILDVSVKTVANLE 193

Query: 182 IDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQ 241
           + N++            S+                  S  +LN +    N+F   L    
Sbjct: 194 LSNIKCVLEDNKCSYFLSILA--------KLQTNPKLSNLTLNNIETTWNSFIRILQ--- 242

Query: 242 ELHNFTNLEYLTLDDSSLHISL-LQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLE 300
            L   T + Y ++ +  L   L  +       SLK LS+     + V        ++   
Sbjct: 243 -LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD-VFGFPQSYIYEIFS 300

Query: 301 HLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYID 360
           +++++   ++       +    +    +L  S + L              L  L+ L + 
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH----LTELETLILQ 356

Query: 361 NNDLRGSLPWC---LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPV 417
            N L+  L           SL+ LD+S N ++            S+  L +S+N     +
Sbjct: 357 MNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415

Query: 418 SLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSN 462
                    ++K+ D  +N+I     +   L     L+ L+++SN
Sbjct: 416 FRCLP---PRIKVLDLHSNKIKSIPKQVVKLE---ALQELNVASN 454

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  110 bits (277), Expect = 2e-25
 Identities = 88/498 (17%), Positives = 155/498 (31%), Gaps = 79/498 (15%)

Query: 89  FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV--ARLSS 146
             S + L +L +S N I  L     +       +L+ LDL  N      L  +      +
Sbjct: 41  ILSLSKLRILIISHNRIQYL--DISV--FKFNQELEYLDLSHNK-----LVKISCHPTVN 91

Query: 147 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 206
           L  L LS N        KEF ++S L+ L ++   ++          +  +  L++S V 
Sbjct: 92  LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS-------VLPIAHLNISKVL 144

Query: 207 IRDGNKLLQSM--GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTL---------- 254
           +  G    +          NT  L     T          +   +  L L          
Sbjct: 145 LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204

Query: 255 ---DDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL 311
                 S+   L  +      +L N+  +      +L              +++     L
Sbjct: 205 KCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ-L 263

Query: 312 NTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWC 371
           +       G S+ +L    +     G   S I +      +++       +  R     C
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI----FSNMNIKNFTVSGTRMVHMLC 319

Query: 372 LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKI 430
            +  +    LD S N LT         HLT +E L L  N  + +    E       L+ 
Sbjct: 320 PSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378

Query: 431 FDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMI 490
            D   N ++ +  +      K  L SL++SSN      F                     
Sbjct: 379 LDISQNSVSYDEKKGDCSWTK-SLLSLNMSSNILTDTIFRCLP----------------- 420

Query: 491 GEFPNWLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEI 546
                       +++ L L ++ +        +L       L+ L+V++N  +  +P  I
Sbjct: 421 -----------PRIKVLDLHSNKIKSIPKQVVKLE-----ALQELNVASNQLK-SVPDGI 463

Query: 547 GDILPSLVYFNISMNALD 564
            D L SL    +  N  D
Sbjct: 464 FDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  110 bits (277), Expect = 2e-25
 Identities = 90/498 (18%), Positives = 165/498 (33%), Gaps = 66/498 (13%)

Query: 454 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDS 513
              L++S NY   +     L     L+   +SH + I      + + N +LE+L L ++ 
Sbjct: 23  TTILNISQNYISELWTSDILSLSK-LRILIISHNR-IQYLDISVFKFNQELEYLDLSHNK 80

Query: 514 LAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGN 573
           L     +  H    L+ LD+S N F      +    +  L +  +S   L+ S      +
Sbjct: 81  LVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 574 VIFLQ-FLDLSNNKLTGEIPDHLAMCCV-NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 631
           +   +  L L       E P+ L      +L  +  +N      +   + ++ NL    +
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 632 EGNHFVGEIPQSLSKCSSL------KGLYLNNNNLSGKIPRWLGNLKG--------LQHI 677
           +      +    LS  + L        L LNN   +      +  L          + ++
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 678 VMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS---IKQVHLSKNMLHGQ 734
            +               L +L I  +  +         +   S   IK   +S       
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT---RM 314

Query: 735 LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE--GEVPIQLCRLN 792
           +        S  + LD S N L  ++ +    L++L  L L  N L+   ++     ++ 
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374

Query: 793 QLQLLDLSDNNL-HGLIPSCFDN-TTLHESY-NNNSSPDKPFKTSFSISGPQGSVEKKIL 849
            LQ LD+S N++ +           +L     ++N   D  F                  
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF------------------ 416

Query: 850 EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI 909
                            +   +  LDL  NK+   IP Q+  L  +Q LN++ N L    
Sbjct: 417 ---------------RCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVP 460

Query: 910 PLTFSNLRHIESLDLSYN 927
              F  L  ++ + L  N
Sbjct: 461 DGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (265), Expect = 7e-24
 Identities = 76/400 (19%), Positives = 145/400 (36%), Gaps = 30/400 (7%)

Query: 579 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 638
            +D S N L   +P  L+        L++S N +     S I SL  LR L++  N    
Sbjct: 4   LVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY 59

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRLDS 697
                      L+ L L++N L  KI         L+H+ +  N  +  PI  EF  +  
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQ 116

Query: 698 LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 757
           L+ L +S  ++  S       L+I +V L     +G+ ++          T  L   +  
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL--QDFNTESLHIVFPT 174

Query: 758 GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQL----------------LDLSD 801
                +I  +S  +  NL  +N++  +    C      L                ++ + 
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 802 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 861
           N+   ++   +  T  + S +N     +     F  SG   S++   +            
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT--SLKALSIHQVVSDVFGFPQ 292

Query: 862 AYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES 921
           +Y   + S +   + + +            ++    L+ S+N LT T+     +L  +E+
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352

Query: 922 LDLSYNKLS--GKIPRQLVDLNTLAIFIVAYNNLSGKIPE 959
           L L  N+L    KI      + +L    ++ N++S    +
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  103 bits (258), Expect = 5e-23
 Identities = 76/438 (17%), Positives = 153/438 (34%), Gaps = 50/438 (11%)

Query: 522 IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLD 581
           I S  +LR L +S+N  Q ++ + +      L Y ++S N L   I       + L+ LD
Sbjct: 41  ILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL-VKIS--CHPTVNLKHLD 96

Query: 582 LSNNKLT----GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLR-WLLLEGNHF 636
           LS N        +   ++      L+FL LS   L+      I  L   +  L+L   + 
Sbjct: 97  LSFNAFDALPICKEFGNM----SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152

Query: 637 VGEIPQSLSKC--SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH----------- 683
             E P+ L      SL  ++  N      +   +  +  L+   +               
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 684 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLK----EGT 739
           L            +L  ++ + N+    +    +  ++    +S   L GQL     + +
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFI-RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271

Query: 740 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 799
             +  +L    +  +          +  S ++  N   +       +   +++    LD 
Sbjct: 272 GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331

Query: 800 SDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT 855
           S+N L   +     +     TL    N      K  + +  +           L+  + +
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS---------LQQLDIS 382

Query: 856 TKNIAYAYQGRV---LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLT 912
             +++Y  +         L  L++S N L   I   +    RI+ L+L  N +  +IP  
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQ 439

Query: 913 FSNLRHIESLDLSYNKLS 930
              L  ++ L+++ N+L 
Sbjct: 440 VVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 99.2 bits (247), Expect = 1e-21
 Identities = 70/426 (16%), Positives = 157/426 (36%), Gaps = 33/426 (7%)

Query: 2   LDLSGNAFNNNVLSSL--ARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKID 59
           LDLS     +N L  +      +L+ L LS N  +     KE  ++  L+ L +    ++
Sbjct: 74  LDLS-----HNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 60  KFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLER-LS 118
           K  V   ++ L    +     +   +  + +   +     +      N      L+  + 
Sbjct: 129 KSSVLP-IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187

Query: 119 RLSKLKKLDLRGNLCNN------SILSSVARLSSLTSLHLSHNILQG--SIDAKEFDSLS 170
            ++ L+  +++  L +N      SIL+ +     L++L L++        I   +    +
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247

Query: 171 NLEELDINDNEIDNVEVSRGYRGL-RKLKSLDLSGVGIRDGNKLLQSM-GSFPSLNTLHL 228
            +    I++ ++      R +      LK+L +  V           +   F ++N  + 
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307

Query: 229 ESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVL 288
             +     +         +   +L   ++ L    +         L+ L +   ++  + 
Sbjct: 308 TVSG--TRMVHMLCPSKISPFLHLDFSNNLL-TDTVFENCGHLTELETLILQMNQLKELS 364

Query: 289 SGQG-FPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQG 347
                    KSL+ LD+      ++    +       SL  L++S + L     R L   
Sbjct: 365 KIAEMTTQMKSLQQLDISQNS--VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP- 421

Query: 348 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 407
                 ++ L + +N ++ S+P  +    +L+ L+V+ NQL  S+       LTS++++ 
Sbjct: 422 -----RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIW 474

Query: 408 LSNNHF 413
           L  N +
Sbjct: 475 LHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 80.3 bits (198), Expect = 1e-15
 Identities = 46/267 (17%), Positives = 100/267 (37%), Gaps = 29/267 (10%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELD----SLRDLEELDIGGN 56
            ++ + N+F    +  L   +++    +S+ +L+G +D ++ D    SL+ L    +  +
Sbjct: 229 NIETTWNSFIR--ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286

Query: 57  K--IDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGL 114
                +  + +  S +     + +G +    +      +    LD S N + + V     
Sbjct: 287 VFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTV----F 341

Query: 115 ERLSRLSKLKKLDLRGNLCNN--SILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNL 172
           E    L++L+ L L+ N       I     ++ SL  L +S N +       +     +L
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 173 EELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSF--PSLNTLHLE 229
             L+++ N + +           ++K LDL        NK+           +L  L++ 
Sbjct: 402 LSLNMSSNILTDTIFR---CLPPRIKVLDLH------SNKIKSIPKQVVKLEALQELNVA 452

Query: 230 SNNFTATLTTTQELHNFTNLEYLTLDD 256
           SN   +           T+L+ + L  
Sbjct: 453 SNQLKSVPDGI--FDRLTSLQKIWLHT 477

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  127 bits (320), Expect = 2e-30
 Identities = 80/390 (20%), Positives = 144/390 (36%), Gaps = 60/390 (15%)

Query: 548 DILPSLVYFNISMNALDGSIPSSFGNVIF--LQFLDLSNNKLTGEIPDHLAMCCVNLEFL 605
           ++    V++++ ++     +   F ++     + +   N+ +  ++P  L      +E L
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELL 80

Query: 606 SLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 664
           +L++  ++  I +  F+    ++ L +  N      P        L  L L  N+LS   
Sbjct: 81  NLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139

Query: 665 PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQV 724
                N   L  + M  N+LE      F    SLQ L +S N ++    S    L     
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL--FHA 197

Query: 725 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 784
           ++S N+L       T     ++  LD S+N +N  +        +L+ L L HNNL  + 
Sbjct: 198 NVSYNLLS------TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DT 247

Query: 785 PIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGP 840
              L     L  +DLS N L  ++   F        L+ S N   + +   +        
Sbjct: 248 A-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP------- 299

Query: 841 QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNL 900
                                      +  L  LDLS N L+ H+        R++ L L
Sbjct: 300 ---------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331

Query: 901 SHNNLTGTIPLTFSNLRHIESLDLSYNKLS 930
            HN++  T+    S    +++L LS+N   
Sbjct: 332 DHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  121 bits (306), Expect = 9e-29
 Identities = 91/663 (13%), Positives = 200/663 (30%), Gaps = 101/663 (15%)

Query: 2   LDLSGNAFNNNVLSSLA--RLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKID 59
            D+  +    +V        L++ + +   ++ +   +    LDS R +E L++   +I+
Sbjct: 30  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE 88

Query: 60  KFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSR 119
                                    D   F   + ++ L M  N I  L  P  +     
Sbjct: 89  -----------------------EIDTYAFAYAHTIQKLYMGFNAIRYL--PPHV--FQN 121

Query: 120 LSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND 179
           +  L  L L  N  ++           LT+L +S+N L+  I+   F + ++L+ L ++ 
Sbjct: 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSS 180

Query: 180 NEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTT 239
           N + +V                               +   PSL   ++  N  +     
Sbjct: 181 NRLTHV------------------------------DLSLIPSLFHANVSYNLLS----- 205

Query: 240 TQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSL 299
              L     +E L    S   I++++    +   L  L +     N +       ++  L
Sbjct: 206 --TLAIPIAVEELDA--SHNSINVVRG--PVNVELTILKLQH---NNLTDTAWLLNYPGL 256

Query: 300 EHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 359
             +D+ +  +      +      M  L+ L +S      N    L+    P+  L+ L +
Sbjct: 257 VEVDLSYNEL---EKIMYHPFVKMQRLERLYISN-----NRLVALNLYGQPIPTLKVLDL 308

Query: 360 DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSL 419
            +N L   +         L  L +  N +     +  L    +++ L LS+N +      
Sbjct: 309 SHNHLL-HVERNQPQFDRLENLYLDHNSIV----TLKLSTHHTLKNLTLSHNDWDCNSLR 363

Query: 420 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 479
               N ++  + D           + H          L    +    +           +
Sbjct: 364 ALFRNVARPAVDD----------ADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSV 413

Query: 480 KEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHK-RLRFLDVSNNNF 538
            E                   +            L G  +L    ++ R     ++N   
Sbjct: 414 VEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQI 473

Query: 539 QGHIPVEI--GDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLA 596
           Q    ++    +I  +L  + +  + L  S  +       L+       + T        
Sbjct: 474 QQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEAD 533

Query: 597 MCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN 656
                 E L   N +L+  + ++      LR         V ++    ++    + +  +
Sbjct: 534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSHH 593

Query: 657 NNN 659
           +++
Sbjct: 594 HHH 596

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  118 bits (297), Expect = 1e-27
 Identities = 100/592 (16%), Positives = 177/592 (29%), Gaps = 143/592 (24%)

Query: 344 LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 403
           +D  L       +++ID         +      + +I+    + +   + ++ L     +
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77

Query: 404 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNY 463
           E L L++                          EI+              ++ L +  N 
Sbjct: 78  ELLNLNDLQIE----------------------EIDTYAFAYAH-----TIQKLYMGFN- 109

Query: 464 GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIH 523
                                     I   P  + +N   L  L L              
Sbjct: 110 -------------------------AIRYLPPHVFQNVPLLTVLVL-------------- 130

Query: 524 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 583
                       N+    +P  I    P L   ++S N L+     +F     LQ L LS
Sbjct: 131 ----------ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179

Query: 584 NNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 643
           +N+LT  +   L     +L   ++S N L     S +     +  L    N     +   
Sbjct: 180 SNRLT-HVDLSL---IPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGP 229

Query: 644 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 703
           +     L  L L +NNL+     WL N  GL  + +  N LE  +   F ++  L+ L I
Sbjct: 230 V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285

Query: 704 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 763
           S+N +  +L                                +L  LDLS+N+L   +   
Sbjct: 286 SNNRLV-ALN------------------------LYGQPIPTLKVLDLSHNHLL-HVERN 319

Query: 764 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN 823
                +L +L L HN++     ++L   + L+ L LS N+       C     L  +   
Sbjct: 320 QPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD-----CNSLRALFRNVAR 371

Query: 824 NSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG 883
            +  D             G              K     Y  R+L  +A   +       
Sbjct: 372 PAVDDADQHCKIDYQLEHG-----------LCCKESDKPYLDRLLQYIALTSVVEK---- 416

Query: 884 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 935
            +    G  +   T+N   +            L+  E L+   N+L  ++ +
Sbjct: 417 -VQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  115 bits (289), Expect = 1e-26
 Identities = 60/320 (18%), Positives = 113/320 (35%), Gaps = 27/320 (8%)

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 698
            I  +L        ++++              L   + +    + +             +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 699 QILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 757
           ++L+++D  I       F    +I+++++  N +   L    F N   L  L L  N L+
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 136

Query: 758 GSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-T 815
            S+P  I     +L+ L++++NNLE            LQ L LS N L  +  S   +  
Sbjct: 137 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 195

Query: 816 TLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 874
             + SYN  S+            S         I  +                   L  L
Sbjct: 196 HANVSYNLLSTLAIPIAVEELDASHNS------INVVRGPVNVE------------LTIL 237

Query: 875 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 934
            L  N L       + N   +  ++LS+N L   +   F  ++ +E L +S N+L   + 
Sbjct: 238 KLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALN 294

Query: 935 RQLVDLNTLAIFIVAYNNLS 954
                + TL +  +++N+L 
Sbjct: 295 LYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  112 bits (281), Expect = 1e-25
 Identities = 80/507 (15%), Positives = 172/507 (33%), Gaps = 66/507 (13%)

Query: 322 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 381
           ++ + K ++   ST+     ++    L     ++ L +++  +     +  A   +++ L
Sbjct: 49  TLNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKL 104

Query: 382 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE 441
            + FN +   +      ++  +  L L  N     +      N  KL      NN +   
Sbjct: 105 YMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLE-R 161

Query: 442 INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN 501
           I E  +      L++L LSSN                           +      L+ + 
Sbjct: 162 I-EDDTFQATTSLQNLQLSSN--------------------------RLTHVDLSLIPS- 193

Query: 502 TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 561
             L    +  + L+      +     +  LD S+N+    +    G +   L    +  N
Sbjct: 194 --LFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVR---GPVNVELTILKLQHN 242

Query: 562 ALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF 621
            L  +  +   N   L  +DLS N+L  +I  H  +    LE L +SNN L   +     
Sbjct: 243 NL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 298

Query: 622 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 681
            +  L+ L L  NH +  + ++  +   L+ LYL++N++   +   L     L+++ +  
Sbjct: 299 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSH 354

Query: 682 NHLEG-PIPVEFCRLDSLQILDISDNNISG----------SLPSCFYPLSIKQVHLSKNM 730
           N  +   +   F  +    + D   +                   +    ++ + L+  +
Sbjct: 355 NDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVV 414

Query: 731 LHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS-HLNLAHNNLEGEVPIQLC 789
              Q  +G      ++ ++    +Y+       + G  QL   +N     ++     Q+ 
Sbjct: 415 EKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQ 474

Query: 790 RLNQLQLLDLSDNNLHGLIPSCFDNTT 816
           +   LQ L    +          D   
Sbjct: 475 QEQLLQGLHAEIDTNLRRYRLPKDGLA 501

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 99.6 bits (248), Expect = 1e-21
 Identities = 77/378 (20%), Positives = 135/378 (35%), Gaps = 52/378 (13%)

Query: 93  NNLEVLDMSGNEIDNL--VVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSL 150
           N           ID     V  G E ++ L+  K +  + +       + +     +  L
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRKLPAALLDSFRQVELL 80

Query: 151 HLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDG 210
           +L+   ++  ID   F     +++L +  N I  +      + +  L  L L        
Sbjct: 81  NLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLE------R 132

Query: 211 NKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL-HISLLQ 265
           N L     G F   P L TL + +NN       T      T+L+ L L  + L H+ L  
Sbjct: 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT--FQATTSLQNLQLSSNRLTHVDL-- 188

Query: 266 SIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPS 325
              S+ PSL + ++S   +             ++E LD     I        + G     
Sbjct: 189 ---SLIPSLFHANVSYNLL------STLAIPIAVEELDASHNSIN------VVRGPVNVE 233

Query: 326 LKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSF 385
           L  L L  + L   +       L     L E+ +  N+L   +         L  L +S 
Sbjct: 234 LTILKLQHNNLTDTAW------LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287

Query: 386 NQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP-LFNHSKLKIFDAKNNEINGEINE 444
           N+L  +++      + +++ L LS+NH      +E       +L+     +N I      
Sbjct: 288 NRLV-ALNLY-GQPIPTLKVLDLSHNHLL---HVERNQPQFDRLENLYLDHNSI-----V 337

Query: 445 SHSLTPKFQLKSLSLSSN 462
           +  L+    LK+L+LS N
Sbjct: 338 TLKLSTHHTLKNLTLSHN 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 98.5 bits (245), Expect = 3e-21
 Identities = 86/508 (16%), Positives = 173/508 (34%), Gaps = 76/508 (14%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 60
           +L L  N  ++           L +L +S+N LE  I+     +   L+ L +  N++  
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH 185

Query: 61  FMVSKGLSKLKSLGLSG---TGFKGTFDVREFD------------SFNNLEVLDMSGNEI 105
             +S  +  L    +S    +       V E D                L +L +  N +
Sbjct: 186 VDLS-LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL 244

Query: 106 DNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKE 165
            +                               + +     L  + LS+N L+  I    
Sbjct: 245 TD------------------------------TAWLLNYPGLVEVDLSYNELE-KIMYHP 273

Query: 166 FDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNT 225
           F  +  LE L I++N +  V ++   + +  LK LDLS   +     + ++   F  L  
Sbjct: 274 FVKMQRLERLYISNNRL--VALNLYGQPIPTLKVLDLSHNHLLH---VERNQPQFDRLEN 328

Query: 226 LHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVN 285
           L+L+ N+       T +L     L+ LTL  +    +   S+ ++F ++   ++   + +
Sbjct: 329 LYLDHNSI-----VTLKLSTHHTLKNLTLSHNDWDCN---SLRALFRNVARPAVDDADQH 380

Query: 286 ---GVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSR 342
                    G    +S +    R  +    TS ++ +  +           S + + S  
Sbjct: 381 CKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINS-VQSLSHY 439

Query: 343 ILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS 402
           I  QG  PL   ++L  + N+LR       A    L    +   QL   + +    +L  
Sbjct: 440 ITQQGGVPLQGNEQLEAEVNELR-------AEVQQLTNEQIQQEQLLQGLHAEIDTNLRR 492

Query: 403 IEELRLSNNHFRIPVSLEPLFNHSKLKIFD--AKNNEINGEINESHSLTPKFQLKSLSLS 460
               +      R   +L  +F H K +      +      E +     T   + ++++L 
Sbjct: 493 YRLPKDGLA--RSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALE 550

Query: 461 SNYGDSVTFPKFLYHQHELKEAELSHIK 488
               +       L  +  LK  ++  ++
Sbjct: 551 KQLDNKRAKQAELRQETSLKRQKVKQLE 578

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  124 bits (312), Expect = 4e-30
 Identities = 87/434 (20%), Positives = 142/434 (32%), Gaps = 71/434 (16%)

Query: 566 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLR 624
            +P+       + ++DLS N +  E+ +       +L+FL +   +    I +  F  L 
Sbjct: 27  ELPAH------VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 625 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL-SGKIPR-WLGNLKGLQHIVMPKN 682
           +L  L L+ N F+     + +  ++L+ L L   NL    +   +   L  L+ +V+  N
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 683 HLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFYPLSIKQV---HLSKNMLH------ 732
           +++   P   F  +    +LD++ N +             K      LS   L       
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 733 -GQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL 791
            G  K G  F  +S+ TLDLS N    S+          + +     +            
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN---SYNMGSSF 256

Query: 792 NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILE 850
                 D  +    GL  S     T   S +   +     F                   
Sbjct: 257 GHTNFKDPDNFTFKGLEAS--GVKTCDLSKSKIFALLKSVFSH----------------- 297

Query: 851 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTI 909
                             + L  L L+ N++   I       LT +  LNLS N L    
Sbjct: 298 -----------------FTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSID 339

Query: 910 PLTFSNLRHIESLDLSYNKLSGKIPRQLVD-LNTLAIFIVAYNNLSGKIPEWTAQFATFN 968
              F NL  +E LDLSYN +   +  Q    L  L    +  N L   +P+    F    
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK-SVPDGI--FDRLT 395

Query: 969 KSSY---DGNPFLC 979
                    NP+ C
Sbjct: 396 SLQKIWLHTNPWDC 409

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  117 bits (295), Expect = 6e-28
 Identities = 83/396 (20%), Positives = 148/396 (37%), Gaps = 46/396 (11%)

Query: 47  DLEELDIGGNKIDKF--MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNE 104
            +  +D+  N I +        L  L+ L +             F   ++L +L +  N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 105 IDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVA--RLSSLTSLHLSHNILQGSID 162
              L    G    + L+ L+ L L     + ++LS      L+SL  L L  N ++    
Sbjct: 91  FLQL--ETGA--FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 163 AKEFDSLSNLEELDINDNEIDNVEVSRGYR-GLRKLKSLDLSGVGIRDGNKL---LQSMG 218
           A  F ++     LD+  N++ ++          +    L LS + ++D N+     +  G
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206

Query: 219 SF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLK 275
           +     S+ TL L  N F       +        +  +L  S+ +        + F    
Sbjct: 207 NPFKNTSITTLDLSGNGFKE-SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 276 NLSMSGCEVNGV------------LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE-- 321
           N +  G E +GV            L    F HF  LE L        L  + +  I +  
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT-------LAQNEINKIDDNA 318

Query: 322 --SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCL-ANTTSL 378
              +  L  L+LS + LG+  SR+ +     L  L+ L +  N +R +L         +L
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSRMFEN----LDKLEVLDLSYNHIR-ALGDQSFLGLPNL 373

Query: 379 RILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 414
           + L +  NQL  S+       LTS++++ L  N + 
Sbjct: 374 KELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  106 bits (267), Expect = 3e-24
 Identities = 81/434 (18%), Positives = 147/434 (33%), Gaps = 61/434 (14%)

Query: 352 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 411
           AH+  + +  N +        +    L+ L V        I ++    L+S+  L+L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 412 HFRIPVSLEP-LFNH-SKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTF 469
            F     LE   FN  + L++       ++G +   +   P   L+ L L  N       
Sbjct: 90  QFL---QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN------- 139

Query: 470 PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLR 529
                           +IK I   P     N  +   L L  +         + S     
Sbjct: 140 ----------------NIKKIQ--PASFFLNMRRFHVLDLTFN--------KVKSICEED 173

Query: 530 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 589
            L+    +F           L S+   +++   L      +      +  LDLS N    
Sbjct: 174 LLNFQGKHFTLL-------RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226

Query: 590 EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 649
            +           +  SL  +    + ++   S  +  +   +   F G       + S 
Sbjct: 227 SMAKRFFDAIAGTKIQSLILS----NSYNMGSSFGHTNFKDPDNFTFKG------LEASG 276

Query: 650 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 709
           +K   L+ + +   +     +   L+ + + +N +       F  L  L  L++S N + 
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336

Query: 710 GSLPSC-FYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DG 766
            S+ S  F  L  ++ + LS N +   L + +F    +L  L L  N L  S+PD I D 
Sbjct: 337 -SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDR 393

Query: 767 LSQLSHLNLAHNNL 780
           L+ L  + L  N  
Sbjct: 394 LTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 96.4 bits (240), Expect = 5e-21
 Identities = 102/518 (19%), Positives = 161/518 (31%), Gaps = 141/518 (27%)

Query: 133 CNNSILSSVARL-SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY 191
           C N  L  V  L + +  + LS N +   ++   F  L +L+ L +       V  +  +
Sbjct: 17  CINRGLHQVPELPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75

Query: 192 RGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEY 251
           RGL  L  L L        N+ L             LE+  F          +   NLE 
Sbjct: 76  RGLSSLIILKLDY------NQFL------------QLETGAF----------NGLANLEV 107

Query: 252 LTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM---RFAR 308
           LTL   +L  ++L                            F    SLE L +      +
Sbjct: 108 LTLTQCNLDGAVLS-------------------GNF-----FKPLTSLEMLVLRDNNIKK 143

Query: 309 IALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCP------LAHLQELYIDNN 362
           I   + F      +M     L L+ + + +     L            L+ +    ++  
Sbjct: 144 IQPASFF-----LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198

Query: 363 DLRGSLPWCLANTTSLRILDVSFNQLTGSISS--SPLVHLTSIEELRLSNNHFRIPVSLE 420
            L           TS+  LD+S N    S++      +  T I+ L LSN++        
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY-------- 250

Query: 421 PLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELK 480
                         +       N +        +K+  LS +                  
Sbjct: 251 -------NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK----------------- 286

Query: 481 EAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQG 540
                    I      +  + T LE L L                        + N    
Sbjct: 287 ---------IFALLKSVFSHFTDLEQLTL------------------------AQNEIN- 312

Query: 541 HIPVEIGDILPSLVYFNISMNALDGSIPS-SFGNVIFLQFLDLSNNKLTGEIPDHLAMCC 599
            I       L  L+  N+S N L GSI S  F N+  L+ LDLS N +   + D   +  
Sbjct: 313 KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGL 370

Query: 600 VNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHF 636
            NL+ L+L  N LK  +   IF  L +L+ + L  N +
Sbjct: 371 PNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  120 bits (304), Expect = 6e-30
 Identities = 68/368 (18%), Positives = 112/368 (30%), Gaps = 84/368 (22%)

Query: 576 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGN 634
            L+ +  S+  L  ++P  L     +   L L NN +   I    F  L+NL  L+L  N
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINN 86

Query: 635 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 694
                 P + +    L+ LYL+ N L  ++P  +                          
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM-------------------------- 119

Query: 695 LDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLH-GQLKEGTFFNCSSLVTLDLS 752
             +LQ L + +N I+    S F  L  +  V L  N L    ++ G F     L  + ++
Sbjct: 120 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 753 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 812
              +  +IP        L+ L+L  N +       L  LN L  L LS N++  +     
Sbjct: 180 DTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 813 DN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVL 868
            N      LH + N                                              
Sbjct: 237 ANTPHLRELHLNNNKLVKVPGGL----------------------------------ADH 262

Query: 869 SLLAGLDLSCNKL------VGHIPPQIGNLTRIQTLNLSHNNLTGTI--PLTFSNLRHIE 920
             +  + L  N +          P           ++L  N +      P TF  +    
Sbjct: 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322

Query: 921 SLDLSYNK 928
           ++ L   K
Sbjct: 323 AVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  117 bits (295), Expect = 9e-29
 Identities = 59/286 (20%), Positives = 106/286 (37%), Gaps = 22/286 (7%)

Query: 528 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 587
           LR +  S+   +  +P    D+ P     ++  N +       F N+  L  L L NNK+
Sbjct: 33  LRVVQCSDLGLE-KVP---KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 588 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 647
           + +I        V LE L LS N LK  +  ++   + L+ L +  N          +  
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGL 144

Query: 648 SSLKGLYLNNNNLSGKI--PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 705
           + +  + L  N L            +K L +I +   ++   IP       SL  L +  
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDG 201

Query: 706 NNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 764
           N I+    +    L ++ ++ LS N +   +  G+  N   L  L L+ N L   +P  +
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259

Query: 765 DGLSQLSHLNLAHNNLEG------EVPIQLCRLNQLQLLDLSDNNL 804
                +  + L +NN+          P    +      + L  N +
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  117 bits (294), Expect = 1e-28
 Identities = 56/286 (19%), Positives = 108/286 (37%), Gaps = 29/286 (10%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           LDL  N            L +L +L L +N++   I       L  LE L +  N++ + 
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKEL 115

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
              K    L+ L +             F+  N + V+++  N + +  +  G      + 
Sbjct: 116 -PEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGA--FQGMK 171

Query: 122 KLKKLDLRGNLCNNSILSSVAR--LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND 179
           KL  + +         ++++ +    SLT LHL  N +   +DA     L+NL +L ++ 
Sbjct: 172 KLSYIRIADTN-----ITTIPQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSF 225

Query: 180 NEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSF---PSLNTLHLESNNFTA- 235
           N I  V+ +        L+ L L+       NKL++  G       +  ++L +NN +A 
Sbjct: 226 NSISAVD-NGSLANTPHLRELHLN------NNKLVKVPGGLADHKYIQVVYLHNNNISAI 278

Query: 236 ---TLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 278
                          +   ++L  + +    +Q   S F  +   +
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP--STFRCVYVRA 322

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  100 bits (252), Expect = 4e-23
 Identities = 57/350 (16%), Positives = 110/350 (31%), Gaps = 80/350 (22%)

Query: 21  SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGF 80
                L L +N++   I   +  +L++L  L +  NKI                      
Sbjct: 52  PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI---------------------- 88

Query: 81  KGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSS 140
                   F     LE L +S N++  L  P+ +                          
Sbjct: 89  -SKISPGAFAPLVKLERLYLSKNQLKEL--PEKM-------------------------- 119

Query: 141 VARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY-RGLRKLKS 199
                +L  L +  N +   +    F+ L+ +  +++  N + +  +  G  +G++KL  
Sbjct: 120 ---PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175

Query: 200 LDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD-- 256
           + ++         +     G  PSL  LHL+ N  T        L    NL  L L    
Sbjct: 176 IRIA------DTNITTIPQGLPPSLTELHLDGNKITK--VDAASLKGLNNLAKLGLSFNS 227

Query: 257 -SSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM---RFARIALN 312
            S++    L +     P L+ L ++  ++  V    G    K ++ + +     + I  N
Sbjct: 228 ISAVDNGSLANT----PHLRELHLNNNKLVKVPG--GLADHKYIQVVYLHNNNISAIGSN 281

Query: 313 TSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN 362
                       S   +SL  + +      I       +     + + N 
Sbjct: 282 DFCPPGYNTKKASYSGVSLFSNPVQYWE--IQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 98.5 bits (246), Expect = 3e-22
 Identities = 57/333 (17%), Positives = 115/333 (34%), Gaps = 67/333 (20%)

Query: 92  FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 151
             +  +LD+  N+I               +++K  D +              L +L +L 
Sbjct: 51  PPDTALLDLQNNKI---------------TEIKDGDFKN-------------LKNLHTLI 82

Query: 152 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 211
           L +N +   I    F  L  LE L ++ N++  +         + L+ L +        N
Sbjct: 83  LINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEK----MPKTLQELRVH------EN 131

Query: 212 KLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSI 267
           ++ +     F     +  + L +N   ++            L Y+ + D+  +I+ +   
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT--NITTIPQ- 188

Query: 268 GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGESMPS 325
             + PSL  L + G ++   +         +L  L + F  I+   N S       + P 
Sbjct: 189 -GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSL-----ANTPH 241

Query: 326 LKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRG------SLPWCLANTTSLR 379
           L+ L L+      N    +  GL    ++Q +Y+ NN++          P       S  
Sbjct: 242 LRELHLNN-----NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296

Query: 380 ILDVSFNQLT-GSISSSPLVHLTSIEELRLSNN 411
            + +  N +    I  S    +     ++L N 
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 98.5 bits (246), Expect = 3e-22
 Identities = 62/338 (18%), Positives = 117/338 (34%), Gaps = 54/338 (15%)

Query: 133 CNNSILSSVARL--SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 190
           C++  L  V +        L L +N +   I   +F +L NL  L + +N+I  +     
Sbjct: 38  CSDLGLEKVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKIS-PGA 95

Query: 191 YRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNL 249
           +  L KL+ L LS       N+L +       +L  L +  N  T    +    +    +
Sbjct: 96  FAPLVKLERLYLSK------NQLKELPEKMPKTLQELRVHENEITKVRKSV--FNGLNQM 147

Query: 250 EYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARI 309
             + L  + L  S +++    F  +K L                       ++ +    I
Sbjct: 148 IVVELGTNPLKSSGIEN--GAFQGMKKL----------------------SYIRIADTNI 183

Query: 310 ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP 369
                   I     PSL  L L G+ +    +++    L  L +L +L +  N +     
Sbjct: 184 T------TIPQGLPPSLTELHLDGNKI----TKVDAASLKGLNNLAKLGLSFNSISAVDN 233

Query: 370 WCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-IPVS----LEPLFN 424
             LANT  LR L ++ N+L   +    L     I+ + L NN+   I  +          
Sbjct: 234 GSLANTPHLRELHLNNNKLV-KVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291

Query: 425 HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSN 462
            +        +N +     +  +    +   ++ L + 
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.3 bits (222), Expect = 3e-19
 Identities = 61/266 (22%), Positives = 104/266 (39%), Gaps = 29/266 (10%)

Query: 697 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 756
            L+++  SD  +   +P    P     + L  N +  ++K+G F N  +L TL L  N +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDL-PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI 88

Query: 757 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-- 814
           +   P     L +L  L L+ N L+ E+P ++     LQ L + +N +  +  S F+   
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 815 --TTLHESYNNNSS---PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS 869
               +    N   S    +  F+                L        NI       +  
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKK------------LSYIRIADTNITTI-PQGLPP 192

Query: 870 LLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK 928
            L  L L  NK+   +       L  +  L LS N+++     + +N  H+  L L+ NK
Sbjct: 193 SLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251

Query: 929 LSGKIPRQLVDLNTLAIFIVAYNNLS 954
           L  K+P  L D   + +  +  NN+S
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.0 bits (216), Expect = 2e-18
 Identities = 64/317 (20%), Positives = 111/317 (35%), Gaps = 49/317 (15%)

Query: 352 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 411
                L + NN +         N  +L  L +  N+++  IS      L  +E L LS N
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 110

Query: 412 HFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 470
             + +P   E +     L+      NEI  ++ +S       Q+  + L +N        
Sbjct: 111 QLKELP---EKMP--KTLQELRVHENEIT-KVRKS-VFNGLNQMIVVELGTN-------- 155

Query: 471 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRF 530
                   LK + +          N   +   KL ++ + + ++     +P      L  
Sbjct: 156 -------PLKSSGI---------ENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTE 196

Query: 531 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 590
           L +  N     +       L +L    +S N++      S  N   L+ L L+NNKL  +
Sbjct: 197 LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 591 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-------SLRNLRWLLLEGNHF-VGEIPQ 642
           +P  LA     ++ + L NN++   I S  F          +   + L  N     EI  
Sbjct: 255 VPGGLA-DHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

Query: 643 SLSKC-SSLKGLYLNNN 658
           S  +C      + L N 
Sbjct: 313 STFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 77.7 bits (192), Expect = 2e-15
 Identities = 60/328 (18%), Positives = 110/328 (33%), Gaps = 58/328 (17%)

Query: 270 IFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYL 329
           + P    L +   ++   +    F + K+L  L +   +I   +         +  L+ L
Sbjct: 50  LPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI---SKISPGAFAPLVKLERL 105

Query: 330 SLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLT 389
            LS      N  + L + +     LQEL +  N++             + ++++  N L 
Sbjct: 106 YLSK-----NQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158

Query: 390 -GSISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHS 447
              I +     +  +  +R+++ +   IP  L        L       N+I  ++ ++ S
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGL---P--PSLTELHLDGNKIT-KV-DAAS 211

Query: 448 LTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFL 507
           L     L  L LS N                           I    N  L N   L  L
Sbjct: 212 LKGLNNLAKLGLSFN--------------------------SISAVDNGSLANTPHLREL 245

Query: 508 YLVNDSLAGPFRLP--IHSHKRLRFLDVSNNNFQ-----GHIPVEIGDILPSLVYFNISM 560
           +L N+ L    ++P  +  HK ++ + + NNN          P        S    ++  
Sbjct: 246 HLNNNKLV---KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 561 NALDGSI--PSSFGNVIFLQFLDLSNNK 586
           N +      PS+F  V     + L N K
Sbjct: 303 NPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 40/222 (18%), Positives = 65/222 (29%), Gaps = 63/222 (28%)

Query: 741 FNCS-SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 799
           F C   L  +  S   L   +P  +      + L+L +N +          L  L  L L
Sbjct: 27  FRCQCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLIL 83

Query: 800 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNI 859
            +N +  + P  F                                               
Sbjct: 84  INNKISKISPGAFAP--------------------------------------------- 98

Query: 860 AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 919
                   L  L  L LS N+L   +P        +Q L +  N +T      F+ L  +
Sbjct: 99  --------LVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQM 147

Query: 920 ESLDLSYNKL-SGKIPRQ-LVDLNTLAIFIVAYNNLSGKIPE 959
             ++L  N L S  I       +  L+   +A  N++  IP+
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ 188

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 11/111 (9%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L LS N+ +     SLA    LR L+L++N+L   +    L   + ++ + +  N I   
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP-GGLADHKYIQVVYLHNNNISAI 278

Query: 62  --------MVSKGLSKLKSLGLSGTGFKGTF-DVREFDSFNNLEVLDMSGN 103
                     +   +    + L     +        F        + +   
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  117 bits (296), Expect = 4e-29
 Identities = 62/242 (25%), Positives = 98/242 (40%), Gaps = 11/242 (4%)

Query: 578 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH- 635
             +  ++  LT  +P  +     +   L L +N L+  +   +F  L  L  L L  N  
Sbjct: 10  TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGL 64

Query: 636 -FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FC 693
            F G   QS    +SLK L L+ N +   +      L+ L+H+    ++L+       F 
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 694 RLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 752
            L +L  LDIS  +   +    F  L S++ + ++ N          F    +L  LDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 753 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 812
              L    P   + LS L  LN++HNN           LN LQ+LD S N++        
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243

Query: 813 DN 814
            +
Sbjct: 244 QH 245

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  111 bits (279), Expect = 7e-27
 Identities = 54/282 (19%), Positives = 96/282 (34%), Gaps = 35/282 (12%)

Query: 529 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 588
             +  ++      +P     I  S     +  N L       F  +  L  L LS+N L+
Sbjct: 10  TEIRCNSKGLT-SVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 589 -GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSL-SK 646
                        +L++L LS N +   + S    L  L  L  + ++       S+   
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 647 CSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN-HLEGPIPVEFCRLDSLQILDISD 705
             +L  L +++ +           L  L+ + M  N   E  +P  F  L +L  LD+S 
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 706 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWID 765
             +                         QL    F + SSL  L++S+N           
Sbjct: 185 CQLE------------------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 766 GLSQLSHLNLAHNNLEGEVPIQLCR--LNQLQLLDLSDNNLH 805
            L+ L  L+ + N++      Q  +   + L  L+L+ N+  
Sbjct: 221 CLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  109 bits (274), Expect = 3e-26
 Identities = 66/239 (27%), Positives = 103/239 (43%), Gaps = 18/239 (7%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLE-GSIDVKELDSLRDLEELDIGGNKI-- 58
           L+L  N   +       +L+ L  L LS N L       +       L+ LD+  N +  
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92

Query: 59  --DKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLER 116
               F+   GL +L+ L    +  K   +   F S  NL  LD+S           G+  
Sbjct: 93  MSSNFL---GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA--FNGI-- 145

Query: 117 LSRLSKLKKLDLRGNLCNNSILSSV-ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEEL 175
            + LS L+ L + GN    + L  +   L +LT L LS   L+  +    F+SLS+L+ L
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVL 204

Query: 176 DINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNK-LLQSMGSFPSLNTLHLESNNF 233
           +++ N   +++ +  Y+ L  L+ LD S   I    K  LQ   S  SL  L+L  N+F
Sbjct: 205 NMSHNNFFSLD-TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS--SLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  108 bits (271), Expect = 8e-26
 Identities = 55/248 (22%), Positives = 88/248 (35%), Gaps = 22/248 (8%)

Query: 21  SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS----KGLSKLKSLGLS 76
           SS   L L  N+L+ S+     D L  L +L +  N +           G + LK L LS
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 77  GTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNS 136
             G         F     LE LD   + +  +     +     L  L  LD+       +
Sbjct: 87  FNGV--ITMSSNFLGLEQLEHLDFQHSNLKQMS-EFSV--FLSLRNLIYLDISHTHTRVA 141

Query: 137 ILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRK 196
                  LSSL  L ++ N  Q +     F  L NL  LD++  +++ +     +  L  
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSS 200

Query: 197 LKSLDLSGVGIRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYL 252
           L+ L++S       N         +    SL  L    N+   T    +  H  ++L +L
Sbjct: 201 LQVLNMS------HNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFL 253

Query: 253 TLDDSSLH 260
            L  +   
Sbjct: 254 NLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 59/291 (20%), Positives = 98/291 (33%), Gaps = 65/291 (22%)

Query: 697 SLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQ-LKEGTFFNCSSLVTLDLSYN 754
           S   L++  N +       F  L  + ++ LS N L  +     + F  +SL  LDLS+N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 755 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNNLHGLIPSCFD 813
            +  ++     GL QL HL+  H+NL+      +   L  L  LD+S  +        F+
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 814 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 873
                                                                 LS L  
Sbjct: 148 G-----------------------------------------------------LSSLEV 154

Query: 874 LDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 932
           L ++ N    +  P I   L  +  L+LS   L    P  F++L  ++ L++S+N     
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 933 IPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKS----SYDGNPFLC 979
                  LN+L +   + N++     +       F  S    +   N F C
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIM-TSKKQE--LQHFPSSLAFLNLTQNDFAC 262

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 90.5 bits (225), Expect = 8e-20
 Identities = 48/185 (25%), Positives = 75/185 (40%), Gaps = 9/185 (4%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           LDLS N     + S+   L  L  L    + L+   +     SLR+L  LDI        
Sbjct: 83  LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141

Query: 62  MVS--KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSR 119
                 GLS L+ L ++G  F+  F    F    NL  LD+S  +++ L         + 
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL--SPTA--FNS 197

Query: 120 LSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSL-SNLEELDIN 178
           LS L+ L++  N   +        L+SL  L  S N +  +   +E     S+L  L++ 
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLT 256

Query: 179 DNEID 183
            N+  
Sbjct: 257 QNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 59/246 (23%), Positives = 95/246 (38%), Gaps = 19/246 (7%)

Query: 92  FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVA--RLSSLTS 149
            ++   L++  N++ +L  P G+    +L++L KL L  N  +     S +    +SL  
Sbjct: 27  PSSATRLELESNKLQSL--PHGV--FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 150 LHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD 209
           L LS N +        F  L  LE LD   + +  +     +  LR L  LD+S    R 
Sbjct: 83  LDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140

Query: 210 -GNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIG 268
             N +   +    SL  L +  N+F              NL +L L    L   L  +  
Sbjct: 141 AFNGIFNGL---SSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLE-QLSPTAF 195

Query: 269 SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARI-ALNTSFLQIIGESMPSLK 327
           +   SL+ L+MS      + +   +    SL+ LD     I       LQ       SL 
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQHF---PSSLA 251

Query: 328 YLSLSG 333
           +L+L+ 
Sbjct: 252 FLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 46/236 (19%), Positives = 88/236 (37%), Gaps = 14/236 (5%)

Query: 454 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH--IKMIGEFPNWLLENNTKLEFLYLVN 511
              L L SN   S+          +L +  LS   +       +      T L++L L  
Sbjct: 30  ATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGLSFK-GCCSQSDFGTTSLKYLDLSF 87

Query: 512 ---DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIP 568
               +++  F       ++L  LD  ++N +      +   L +L+Y +IS      +  
Sbjct: 88  NGVITMSSNFL----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 569 SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLR 627
             F  +  L+ L ++ N         +     NL FL LS   L+  +    F+ L +L+
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQ 202

Query: 628 WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL-KGLQHIVMPKN 682
            L +  N+F           +SL+ L  + N++     + L +    L  + + +N
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.4 bits (173), Expect = 4e-13
 Identities = 46/271 (16%), Positives = 96/271 (35%), Gaps = 21/271 (7%)

Query: 246 FTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGV-LSGQGFPHFKSLEHLDM 304
            ++   L L+ + L  SL   +      L  LS+S   ++      Q      SL++LD+
Sbjct: 27  PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 305 RFARI-ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGL-CPLAHLQELYIDNN 362
            F  +  ++++F       +  L++L    S L     ++ +  +   L +L  L I + 
Sbjct: 86  SFNGVITMSSNF-----LGLEQLEHLDFQHSNL----KQMSEFSVFLSLRNLIYLDISHT 136

Query: 363 DLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPL 422
             R +        +SL +L ++ N    +        L ++  L LS       +S    
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAF 195

Query: 423 FNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEA 482
            + S L++ +  +N       ++        L+ L  S N+  +    +  +    L   
Sbjct: 196 NSLSSLQVLNMSHNNFFS--LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253

Query: 483 ELSH-----IKMIGEFPNWLLENNTKLEFLY 508
            L+            F  W+ +    L  + 
Sbjct: 254 NLTQNDFACTCEHQSFLQWIKDQRQLLVEVE 284

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.4 bits (147), Expect = 8e-10
 Identities = 40/215 (18%), Positives = 62/215 (28%), Gaps = 58/215 (26%)

Query: 744 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE--GEVPIQLCRLNQLQLLDLSD 801
           SS   L+L  N L        D L+QL+ L+L+ N L   G           L+ LDLS 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 802 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 861
           N +   + S F                                                 
Sbjct: 88  NGVIT-MSSNFLG----------------------------------------------- 99

Query: 862 AYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 920
                 L  L  LD   + L       +  +L  +  L++SH +        F+ L  +E
Sbjct: 100 ------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 921 SLDLSYNKLSGKIPRQ-LVDLNTLAIFIVAYNNLS 954
            L ++ N            +L  L    ++   L 
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 36/194 (18%), Positives = 61/194 (31%), Gaps = 40/194 (20%)

Query: 771 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSS 826
           + +      L   VP  +   +    L+L  N L  L    FD     T L  S N  S 
Sbjct: 10  TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 827 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP 886
                                       +             + L  LDLS N ++  + 
Sbjct: 67  ----------------------KGCCSQSDFG---------TTSLKYLDLSFNGVI-TMS 94

Query: 887 PQIGNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAI 945
                L +++ L+  H+NL        F +LR++  LD+S+             L++L +
Sbjct: 95  SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154

Query: 946 FIVAYNNLSGKIPE 959
             +A N+       
Sbjct: 155 LKMAGNSFQENFLP 168

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  112 bits (283), Expect = 4e-27
 Identities = 59/301 (19%), Positives = 109/301 (36%), Gaps = 27/301 (8%)

Query: 528 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 587
           LR +  S+   +  +P    +I P     ++  N +       F  +  L  L L NNK+
Sbjct: 35  LRVVQCSDLGLK-AVPK---EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 588 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 647
           + +I +        L+ L +S N L   I   +    +L  L +  N          S  
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGL 146

Query: 648 SSLKGLYLNNNNLSGKI--PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 705
            ++  + +  N L      P     LK L ++ + +  L G IP +    ++L  L +  
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTG-IPKDL--PETLNELHLDH 202

Query: 706 NNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 764
           N I             + ++ L  N +   ++ G+     +L  L L  N L+  +P  +
Sbjct: 203 NKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260

Query: 765 DGLSQLSHLNLAHNNLEGEVP-------IQLCRLNQLQLLDLSDNNL--HGLIPSCFDNT 815
             L  L  + L  NN+  +V            +      + L +N +    + P+ F   
Sbjct: 261 PDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319

Query: 816 T 816
           T
Sbjct: 320 T 320

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  109 bits (274), Expect = 5e-26
 Identities = 60/284 (21%), Positives = 106/284 (37%), Gaps = 26/284 (9%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           LDL  N  +         L  L +L L +N++   I  K    LR L++L I  N + + 
Sbjct: 59  LDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVE- 116

Query: 62  MVSKGL-SKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRL 120
            +   L S L  L +     +       F    N+  ++M GN ++N     G      L
Sbjct: 117 -IPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA--FDGL 172

Query: 121 SKLKKLDLRGNLCNNSILSSVAR--LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIN 178
            KL  L +         L+ + +    +L  LHL HN +Q +I+ ++    S L  L + 
Sbjct: 173 -KLNYLRISEAK-----LTGIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLG 225

Query: 179 DNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTA--- 235
            N+I  +E +     L  L+ L L    +      L  +     L  ++L +NN T    
Sbjct: 226 HNQIRMIE-NGSLSFLPTLRELHLDNNKLSRVPAGLPDL---KLLQVVYLHTNNITKVGV 281

Query: 236 -TLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 278
                            ++L ++ +    +Q   + F  + +  
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP--ATFRCVTDRL 323

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  106 bits (267), Expect = 5e-25
 Identities = 69/368 (18%), Positives = 112/368 (30%), Gaps = 85/368 (23%)

Query: 576 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGN 634
            L+ +  S+  L   +P  ++    +   L L NN +   +    F  L++L  L+L  N
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN 88

Query: 635 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 694
                  ++ S    L+ LY++ N+L  +IP  L                          
Sbjct: 89  KISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL-------------------------- 121

Query: 695 LDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 753
             SL  L I DN I       F  L ++  + +  N L     E   F+   L  L +S 
Sbjct: 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181

Query: 754 NYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 813
             L   IP   D    L+ L+L HN ++      L R ++L  L L  N +  +      
Sbjct: 182 AKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238

Query: 814 N----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS 869
                  LH   N  S                                          L 
Sbjct: 239 FLPTLRELHLDNNKLSRVPAGLPD----------------------------------LK 264

Query: 870 LLAGLDLSCNKLVGHIPPQI-------GNLTRIQTLNLSHNNLTGTI--PLTFSNLRHIE 920
           LL  + L  N +   +                   ++L +N +      P TF  +    
Sbjct: 265 LLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

Query: 921 SLDLSYNK 928
           ++     K
Sbjct: 324 AIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 97.0 bits (242), Expect = 8e-22
 Identities = 55/291 (18%), Positives = 103/291 (35%), Gaps = 47/291 (16%)

Query: 645 SKCS-SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 703
             C   L+ +  ++  L   +P+ +        + +  N +      +F  L  L  L +
Sbjct: 29  FGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVL 85

Query: 704 SDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD 762
            +N IS      F PL  ++++++SKN L  ++        SSLV L +  N +      
Sbjct: 86  VNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKG 141

Query: 763 WIDGLSQLSHLNLAHNNL-EGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-TTLHES 820
              GL  ++ + +  N L             +L  L +S+  L G+     +    LH  
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLD 201

Query: 821 YNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK 880
           +N                        KI  I                 S L  L L  N+
Sbjct: 202 HN------------------------KIQAIELEDLLR---------YSKLYRLGLGHNQ 228

Query: 881 LVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 930
           +   I       L  ++ L+L +N L+  +P    +L+ ++ + L  N ++
Sbjct: 229 I-RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 96.6 bits (241), Expect = 1e-21
 Identities = 57/338 (16%), Positives = 115/338 (34%), Gaps = 55/338 (16%)

Query: 133 CNNSILSSVARL--SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 190
           C++  L +V +      T L L +N +   +   +F  L +L  L + +N+I  +   + 
Sbjct: 40  CSDLGLKAVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIH-EKA 97

Query: 191 YRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNL 249
           +  LRKL+ L +S       N L++       SL  L +  N                N+
Sbjct: 98  FSPLRKLQKLYISK------NHLVEIPPNLPSSLVELRIHDNRIRKVPKGV--FSGLRNM 149

Query: 250 EYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARI 309
             + +  + L  S  +     F  LK                       L +L +  A++
Sbjct: 150 NCIEMGGNPLENSGFEP--GAFDGLK-----------------------LNYLRISEAKL 184

Query: 310 ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP 369
                   I  +   +L  L L  + +      I  + L   + L  L + +N +R    
Sbjct: 185 T------GIPKDLPETLNELHLDHNKI----QAIELEDLLRYSKLYRLGLGHNQIRMIEN 234

Query: 370 WCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-IPV----SLEPLFN 424
             L+   +LR L +  N+L+  + +  L  L  ++ + L  N+   + V     +     
Sbjct: 235 GSLSFLPTLRELHLDNNKLS-RVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292

Query: 425 HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSN 462
            +        NN +     +  +        ++   + 
Sbjct: 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.5 bits (233), Expect = 1e-20
 Identities = 56/292 (19%), Positives = 99/292 (33%), Gaps = 30/292 (10%)

Query: 490 IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 549
           I E      +    L  L LVN+ ++          ++L+ L +S N+    IP    ++
Sbjct: 66  ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIP---PNL 121

Query: 550 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 609
             SLV   I  N +       F  +  +  +++  N L     +  A   + L +L +S 
Sbjct: 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181

Query: 610 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNNNLSGKIPRWL 668
             L   I   +     L  L L+ N     I    L + S L  L L +N +       L
Sbjct: 182 AKLT-GIPKDLPE--TLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237

Query: 669 GNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 728
             L  L+ + +  N L   +P     L  LQ++ +  NNI+    + F P+         
Sbjct: 238 SFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV--------- 287

Query: 729 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI--PDWIDGLSQLSHLNLAHN 778
                    G     +    + L  N +      P     ++    +   + 
Sbjct: 288 ---------GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.2 bits (219), Expect = 6e-19
 Identities = 63/337 (18%), Positives = 107/337 (31%), Gaps = 80/337 (23%)

Query: 94  NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-----ARLSSLT 148
           +  +LD+  N+I  L   +       L  L  L L  N      +S +     + L  L 
Sbjct: 55  DTTLLDLQNNDISEL--RKDD--FKGLQHLYALVLVNNK-----ISKIHEKAFSPLRKLQ 105

Query: 149 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIR 208
            L++S N L   I     +  S+L EL I+DN I  V     + GLR +  +++      
Sbjct: 106 KLYISKNHLV-EIPP---NLPSSLVELRIHDNRIRKVP-KGVFSGLRNMNCIEMG----- 155

Query: 209 DGNKLLQSM---GSFPSLN--TLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISL 263
            GN L  S    G+F  L    L +     T              L  L LD + +    
Sbjct: 156 -GNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL-----PETLNELHLDHNKIQ--- 206

Query: 264 LQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGE 321
                                   +  +    +  L  L +   +I +  N S       
Sbjct: 207 -----------------------AIELEDLLRYSKLYRLGLGHNQIRMIENGSL-----S 238

Query: 322 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRG------SLPWCLANT 375
            +P+L+ L L       N    +  GL  L  LQ +Y+  N++                 
Sbjct: 239 FLPTLRELHLDN-----NKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKR 293

Query: 376 TSLRILDVSFNQLT-GSISSSPLVHLTSIEELRLSNN 411
                + +  N +    +  +    +T    ++  N 
Sbjct: 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.2 bits (219), Expect = 7e-19
 Identities = 53/263 (20%), Positives = 96/263 (36%), Gaps = 24/263 (9%)

Query: 697 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 756
            L+++  SD  +  ++P          + L  N +  +L++  F     L  L L  N +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEI-SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 757 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-- 814
           +         L +L  L ++ N+L  E+P  L   + L  L + DN +  +    F    
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 815 --TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 872
               +    N           +       G+ +   L     +   +       +   L 
Sbjct: 148 NMNCIEMGGNPL--------ENSGF--EPGAFDGLKLNYLRISEAKLTG-IPKDLPETLN 196

Query: 873 GLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 931
            L L  NK+   I  +     +++  L L HN +      + S L  +  L L  NKLS 
Sbjct: 197 ELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS- 254

Query: 932 KIPRQLVDLNTLAIFIVAYNNLS 954
           ++P  L DL  L +  +  NN++
Sbjct: 255 RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.1 bits (167), Expect = 3e-12
 Identities = 55/277 (19%), Positives = 96/277 (34%), Gaps = 35/277 (12%)

Query: 323 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANT-TSLRIL 381
           +  L  L L  + +    S+I ++   PL  LQ+LYI  N L   +P    N  +SL  L
Sbjct: 77  LQHLYALVLVNNKI----SKIHEKAFSPLRKLQKLYISKNHLV-EIP---PNLPSSLVEL 128

Query: 382 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE 441
            +  N++   +       L ++  + +  N           F+  KL        ++   
Sbjct: 129 RIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL--- 184

Query: 442 INESHSLTPKF--QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLE 499
                 +       L  L L  N   ++   + L    +L    L H + I    N  L 
Sbjct: 185 ----TGIPKDLPETLNELHLDHNKIQAIE-LEDLLRYSKLYRLGLGHNQ-IRMIENGSLS 238

Query: 500 NNTKLEFLYLVNDSLAGPFRLP--IHSHKRLRFLDVSNNNFQGHIP------VEIGDILP 551
               L  L+L N+ L+   R+P  +   K L+ + +  NN    +       V  G    
Sbjct: 239 FLPTLRELHLDNNKLS---RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRA 294

Query: 552 SLVYFNISMNALDGSI--PSSFGNVIFLQFLDLSNNK 586
                ++  N +      P++F  V     +   N K
Sbjct: 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 37/216 (17%), Positives = 63/216 (29%), Gaps = 61/216 (28%)

Query: 741 FNCS-SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 799
           F C   L  +  S   L  ++P  I      + L+L +N++          L  L  L L
Sbjct: 29  FGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVL 85

Query: 800 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNI 859
            +N +  +    F                                               
Sbjct: 86  VNNKISKIHEKAFSP--------------------------------------------- 100

Query: 860 AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 919
                   L  L  L +S N LV  IPP +   + +  L +  N +       FS LR++
Sbjct: 101 --------LRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 920 ESLDLSYNKL-SGKIPRQLVDLNTLAIFIVAYNNLS 954
             +++  N L +        D   L    ++   L+
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  114 bits (286), Expect = 2e-26
 Identities = 88/473 (18%), Positives = 177/473 (37%), Gaps = 37/473 (7%)

Query: 352 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 411
              + L +  N +       ++  + LR+L +S N++  S+     +    +E L +S+N
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110

Query: 412 HFRIPVSLEPLFNHSKLKIFDAKNNEIN--GEINESHSLTPKFQLKSLSLSSNYGDSVTF 469
             +   ++      + L+  D   N+ +      E  +LT   +L  L LS+     +  
Sbjct: 111 RLQ---NI-SCCPMASLRHLDLSFNDFDVLPVCKEFGNLT---KLTFLGLSAAKFRQLDL 163

Query: 470 PKFLYHQHELKEAELSHIKM-IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL 528
               +        +L    +  GE  +  + N T L  ++  N   +    + +++   L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 529 RFLDVS-NNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF-----LQFLDL 582
           +  ++  N+     +   + ++       N+++  ++ +   S     F     +++L++
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 583 SNNKLTG----EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 638
            N  +T     E   +      +L    + N        +       +   +L  +    
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 698
                    SS   L    N  +  + +    LK LQ +++ +N L+           ++
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNM 402

Query: 699 QILDISDNNISGSLPS------CFYPLSIKQVHLSKNMLHGQLKEGTFFNC--SSLVTLD 750
             L+  D +++ SL S      C +  SI  ++LS NML G     + F C    +  LD
Sbjct: 403 SSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTG-----SVFRCLPPKVKVLD 456

Query: 751 LSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 803
           L  N +  SIP  +  L  L  LN+A N L+        RL  LQ + L DN 
Sbjct: 457 LHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  110 bits (277), Expect = 3e-25
 Identities = 90/474 (18%), Positives = 171/474 (36%), Gaps = 55/474 (11%)

Query: 322 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 381
            +  L+ L LS + + +    +          L+ L + +N L+ ++        SLR L
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFLF----NQDLEYLDVSHNRLQ-NISC--CPMASLRHL 126

Query: 382 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPL-FNHSKLKIFDAKNNEING 440
           D+SFN            +LT +  L LS   FR    L+ L   H  L          + 
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR---QLDLLPVAHLHLSCILLDLVSYHI 183

Query: 441 EINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWL--- 497
           +  E+ SL        L L  +     +    +   + L   +LS+IK+  E    L   
Sbjct: 184 KGGETESL-QIPNTTVLHLVFHPNSLFSVQVNMS-VNALGHLQLSNIKLNDENCQRLMTF 241

Query: 498 ---LENNTKLEFLYLVNDSLAGPFRLPIHS---HKRLRFLDVSNNNFQGHIPVEIGDI-- 549
              L     L  + L +        + +      + + +L++ N      I  E      
Sbjct: 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSE 301

Query: 550 --LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 607
             L SL+  ++       S  + +     +    LS +     I         +  FL+ 
Sbjct: 302 TALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNF 360

Query: 608 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW 667
           + N     +F    +L+ L+ L+L+ N       ++  K + +                 
Sbjct: 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGL-----KNFFKVALM----------------- 398

Query: 668 LGNLKGLQHIVMPKNHLE-GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHL 726
             N+  L+ + +  N L            +S+ +L++S N ++GS+  C  P  +K + L
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL-PPKVKVLDL 457

Query: 727 SKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD-WIDGLSQLSHLNLAHNN 779
             N +   + +    +  +L  L+++ N L  S+PD   D L+ L ++ L  N 
Sbjct: 458 HNNRIM-SIPKD-VTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  101 bits (254), Expect = 2e-22
 Identities = 89/512 (17%), Positives = 167/512 (32%), Gaps = 91/512 (17%)

Query: 89  FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV--ARLSS 146
               + L VL +S N I +L     +        L+ LD+  N      L ++    ++S
Sbjct: 72  ISFLSELRVLRLSHNRIRSL--DFHV--FLFNQDLEYLDVSHNR-----LQNISCCPMAS 122

Query: 147 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 206
           L  L LS N        KEF +L+ L  L ++  +   +++            LDL    
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYH 182

Query: 207 IRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQS 266
           I+ G        S    NT  L       +L + Q   +   L +L L +  L+    Q 
Sbjct: 183 IKGG-----ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237

Query: 267 IGSIF------PSLKNLSMSGCEV--NGVLSGQGFPHFKSLEHLDMRFARIA--LNTSFL 316
           + +        P+L N+++   E      +    F   + +E+L++    I   ++    
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 317 QIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTT 376
                ++ SL    +       +   +        A +    +  +D       C  + +
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSV----FAEMNIKMLSISDTPFIHMVCPPSPS 353

Query: 377 SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 436
           S   L+ + N  T          L  ++ L L  N  +   +   +   +K         
Sbjct: 354 SFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLK---NFFKVALMTK--------- 400

Query: 437 EINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNW 496
                            + SL       +S+    +                      + 
Sbjct: 401 ----------------NMSSLETLDVSLNSLNSHAY----------------------DR 422

Query: 497 LLENNTKLEFLYLVNDSL-AGPF-RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLV 554
                  +  L L ++ L    F  LP      ++ LD+ NN     IP ++   L +L 
Sbjct: 423 TCAWAESILVLNLSSNMLTGSVFRCLPPK----VKVLDLHNNRIM-SIPKDV-THLQALQ 476

Query: 555 YFNISMNALDGSIP-SSFGNVIFLQFLDLSNN 585
             N++ N L  S+P   F  +  LQ++ L +N
Sbjct: 477 ELNVASNQL-KSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  101 bits (252), Expect = 4e-22
 Identities = 96/471 (20%), Positives = 176/471 (37%), Gaps = 54/471 (11%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L LS N+ +   +  ++ LS LR L LS NR+  S+D       +DLE LD+  N++ + 
Sbjct: 57  LSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QN 114

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
           +    ++ L+ L LS   F      +EF +   L  L +S  +   L        L  ++
Sbjct: 115 ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-------DLLPVA 167

Query: 122 KLKKLDLRGNLCNNSI---LSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIN 178
            L    +  +L +  I    +   ++ + T LHL  +        +   S++ L  L   
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS-LFSVQVNMSVNALGHL--- 223

Query: 179 DNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT-ATL 237
                            +L ++ L+    +     L  +   P+L  + L+    T    
Sbjct: 224 -----------------QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266

Query: 238 TTTQELHNFTNLEYLTLDDSSLHISL-LQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHF 296
               +      +EYL + + ++   +  +       +LK+L +   +    L  +    +
Sbjct: 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL-Y 325

Query: 297 KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQE 356
                ++++   I+       +   S  S  +L+ + +    +  +        L  LQ 
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST----LKRLQT 381

Query: 357 LYIDNNDLRGSLPW---CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 413
           L +  N L+ +         N +SL  LDVS N L             SI  L LS+N  
Sbjct: 382 LILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440

Query: 414 RIPV--SLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSN 462
              V   L P     K+K+ D  NN I     +   L     L+ L+++SN
Sbjct: 441 TGSVFRCLPP-----KVKVLDLHNNRIMSIPKDVTHLQ---ALQELNVASN 483

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  100 bits (251), Expect = 4e-22
 Identities = 71/428 (16%), Positives = 153/428 (35%), Gaps = 34/428 (7%)

Query: 522 IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLD 581
           I     LR L +S+N  +  +   +      L Y ++S N L  +I      +  L+ LD
Sbjct: 72  ISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNIS--CCPMASLRHLD 127

Query: 582 LSNNKLT----GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR-NLRWLLLEGNHF 636
           LS N        +   +L      L FL LS    +      +  L  +   L L   H 
Sbjct: 128 LSFNDFDVLPVCKEFGNL----TKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183

Query: 637 VGEIPQSLS--KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP----IPV 690
            G   +SL     + L  ++  N+  S ++   +  L  LQ   +  N            
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 691 EFCRLDSLQILDISDNNISG----SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCS-- 744
           E  R  +L  + +     +      L   F+P  ++ +++    +  ++    F      
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303

Query: 745 --SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 802
             SL+   +       S        ++++   L+ ++      +     +    L+ + N
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363

Query: 803 NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEK-KILEIFEFTTKNIAY 861
                +          ++           K  F ++    ++   + L++   +  + AY
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQR---NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY 420

Query: 862 AYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES 921
                    +  L+LS N L G +   +    +++ L+L +N +  +IP   ++L+ ++ 
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQE 477

Query: 922 LDLSYNKL 929
           L+++ N+L
Sbjct: 478 LNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 89.9 bits (223), Expect = 1e-18
 Identities = 82/426 (19%), Positives = 156/426 (36%), Gaps = 35/426 (8%)

Query: 2   LDLSGNAFNNNVLSSL--ARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKID 59
           LD+S     +N L ++    ++SLR L LS N  +     KE  +L  L  L +   K  
Sbjct: 105 LDVS-----HNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159

Query: 60  KFMVSKGLS-KLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLS 118
           +  +       L  + L    +       E     N  VL +  +      V   +   +
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNA 219

Query: 119 RLSK-LKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAK----EFDSLSNLE 173
                L  + L    C   +          T L+++   ++ +        +F     +E
Sbjct: 220 LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279

Query: 174 ELDINDNEI-DNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGS-FPSLNTLHLESN 231
            L+I +  I + ++          LKSL +  V  +      +++ S F  +N   L  +
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339

Query: 232 NFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGV--LS 289
           +            + ++  +L    +        S+     +LK L     + NG+    
Sbjct: 340 DTPFIHMVCP--PSPSSFTFLNFTQN----VFTDSVFQGCSTLKRLQTLILQRNGLKNFF 393

Query: 290 GQGFP--HFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQG 347
                  +  SLE LD+     +LN+           S+  L+LS + L  +  R L   
Sbjct: 394 KVALMTKNMSSLETLDVSLN--SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--- 448

Query: 348 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 407
                 ++ L + NN +  S+P  + +  +L+ L+V+ NQL  S+       LTS++ + 
Sbjct: 449 ---PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIW 503

Query: 408 LSNNHF 413
           L +N +
Sbjct: 504 LHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.0 bits (205), Expect = 2e-16
 Identities = 63/379 (16%), Positives = 113/379 (29%), Gaps = 26/379 (6%)

Query: 579 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHFV 637
            +D SN  LT  +P  L       + LSLS NS+   +       L  LR L L  N   
Sbjct: 35  MVDYSNRNLT-HVPKDL---PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRI- 88

Query: 638 GEIPQSL-SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRL 695
             +   +      L+ L +++N L   I      +  L+H+ +  N  +  P+  EF  L
Sbjct: 89  RSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNL 145

Query: 696 DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 755
             L  L +S              L +  + L     H +  E       +   L L ++ 
Sbjct: 146 TKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205

Query: 756 LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNT 815
            +         ++ L HL L++  L  E   +L           +  N+           
Sbjct: 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265

Query: 816 TLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLD 875
           ++                  +I          I E  +       + Y    L  L    
Sbjct: 266 SV----KLFQFFWPRPVEYLNIYN------LTITERIDREE----FTYSETALKSLMIEH 311

Query: 876 LSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 935
           +     +            +    LS ++      +   +      L+ + N  +  + +
Sbjct: 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

Query: 936 QLVDLNTLAIFIVAYNNLS 954
               L  L   I+  N L 
Sbjct: 372 GCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 82.6 bits (204), Expect = 3e-16
 Identities = 67/421 (15%), Positives = 144/421 (34%), Gaps = 67/421 (15%)

Query: 548 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 607
           D+ P     ++S N++          +  L+ L LS+N++   +  H+ +   +LE+L +
Sbjct: 49  DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDV 107

Query: 608 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW 667
           S+N L+        ++                   S    +SL+ L L+ N+        
Sbjct: 108 SHNRLQ--------NI-------------------SCCPMASLRHLDLSFNDFD------ 134

Query: 668 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 727
                              P+  EF  L  L  L +S              L +  + L 
Sbjct: 135 -----------------VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD 177

Query: 728 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ 787
               H +  E       +   L L ++  +         ++ L HL L++  L  E   +
Sbjct: 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237

Query: 788 LCRLNQ------------LQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSF 835
           L                 LQ ++ +      L    +     + +  N +  ++  +  F
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 836 SISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRI 895
           + S  + +++  ++E  +      +      V + +    LS +           + +  
Sbjct: 298 TYS--ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF 355

Query: 896 QTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS--GKIPRQLVDLNTLAIFIVAYNNL 953
             LN + N  T ++    S L+ +++L L  N L    K+     ++++L    V+ N+L
Sbjct: 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415

Query: 954 S 954
           +
Sbjct: 416 N 416

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  114 bits (286), Expect = 3e-26
 Identities = 73/379 (19%), Positives = 112/379 (29%), Gaps = 103/379 (27%)

Query: 552 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNS 611
                N+  + L  ++P        +  L + +N LT  +P         L  L +S N 
Sbjct: 41  GNAVLNVGESGL-TTLPDCLPA--HITTLVIPDNNLT-SLPALPP----ELRTLEVSGNQ 92

Query: 612 LKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 671
           L   +      L  L        H            S L  L++  N L+  +P     L
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLT-SLPVLPPGL 143

Query: 672 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNML 731
           + L    +  N L   +P        L  L   +N ++ SLP                  
Sbjct: 144 QELS---VSDNQLAS-LPALPS---ELCKLWAYNNQLT-SLPMLP--------------- 180

Query: 732 HGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL 791
                       S L  L +S N L  S+P     L +L   N    +L           
Sbjct: 181 ------------SGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPAL-------P 220

Query: 792 NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILE 850
           + L+ L +S N L  L     +   L  S N  +S P                       
Sbjct: 221 SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM---------------------- 258

Query: 851 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP 910
                           + S L  L +  N+L   +P  + +L+   T+NL  N L+    
Sbjct: 259 ----------------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS---E 298

Query: 911 LTFSNLRHIESLDLSYNKL 929
            T   LR I S       +
Sbjct: 299 RTLQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (279), Expect = 2e-25
 Identities = 74/352 (21%), Positives = 119/352 (33%), Gaps = 47/352 (13%)

Query: 479 LKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNF 538
                +     +   P+ L  +   +  L + +++L     LP      LR L+VS N  
Sbjct: 42  NAVLNVGE-SGLTTLPDCLPAH---ITTLVIPDNNLT---SLP-ALPPELRTLEVSGNQL 93

Query: 539 QGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC 598
              +PV     L  L  F+  +  L             L  L +  N+LT  +P      
Sbjct: 94  T-SLPVLPPG-LLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPP-- 141

Query: 599 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNN 658
              L+ LS+S+N L     S       L  L    N     +P   S    L+ L +++N
Sbjct: 142 --GLQELSVSDNQLA----SLPALPSELCKLWAYNNQLT-SLPMLPS---GLQELSVSDN 191

Query: 659 NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP 718
            L+  +P     L  L       N L   +P        L+ L +S N ++ SLP    P
Sbjct: 192 QLA-SLPTLPSELYKLW---AYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL--P 240

Query: 719 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN 778
             +K++ +S N L   L        S L++L +  N L   +P+ +  LS  + +NL  N
Sbjct: 241 SELKELMVSGNRL-TSLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294

Query: 779 NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKP 830
            L       L  +                  S    T        +      
Sbjct: 295 PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  110 bits (276), Expect = 5e-25
 Identities = 71/354 (20%), Positives = 112/354 (31%), Gaps = 98/354 (27%)

Query: 577 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 636
              L++  + LT  +PD L     ++  L + +N+L     S       LR L + GN  
Sbjct: 42  NAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLT----SLPALPPELRTLEVSGNQL 93

Query: 637 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 696
              +P        L        +L            GL  + +  N L   +PV      
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLTS-LPVL---PP 141

Query: 697 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 756
            LQ L +SDN ++ SLP+                             S L  L    N L
Sbjct: 142 GLQELSVSDNQLA-SLPALP---------------------------SELCKLWAYNNQL 173

Query: 757 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 816
             S+P      S L  L+++ N L   +P     L +L   +    +L  L         
Sbjct: 174 T-SLPM---LPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGL---KE 225

Query: 817 LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 876
           L  S N                        ++  +                 S L  L +
Sbjct: 226 LIVSGN------------------------RLTSLPVL-------------PSELKELMV 248

Query: 877 SCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 930
           S N+L   +P     L     L++  N LT  +P +  +L    +++L  N LS
Sbjct: 249 SGNRLT-SLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (258), Expect = 1e-22
 Identities = 76/430 (17%), Positives = 129/430 (30%), Gaps = 105/430 (24%)

Query: 519 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 578
           ++    +     L+V  +     +P  +      +    I  N L  S+P+       L+
Sbjct: 33  KMRACLNNGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPALPPE---LR 84

Query: 579 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 638
            L++S N+LT  +P       + L   S     L             L  L + GN    
Sbjct: 85  TLEVSGNQLT-SLPVLPP-GLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQL-T 134

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 698
            +P        L+ L +++N L+  +P     L  L       N L   +P+       L
Sbjct: 135 SLPVLPP---GLQELSVSDNQLA-SLPALPSELCKLW---AYNNQLTS-LPML---PSGL 183

Query: 699 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 758
           Q L +SDN ++ SLP+                             S L  L    N L  
Sbjct: 184 QELSVSDNQLA-SLPTLP---------------------------SELYKLWAYNNRLT- 214

Query: 759 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 818
           S+P      S L  L ++ N L   +P      ++L+ L +S N L  L        +L 
Sbjct: 215 SLPALP---SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLTSLPMLPSGLLSLS 267

Query: 819 ESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 877
              N  +  P+                      +                LS    ++L 
Sbjct: 268 VYRNQLTRLPE---------------------SLIH--------------LSSETTVNLE 292

Query: 878 CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLS-YNKLSGKIPRQ 936
            N L       +  +T           +        S  R   +L L+  + L      +
Sbjct: 293 GNPLSERTLQALREITS---APGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGE 349

Query: 937 LVDLNTLAIF 946
               +   +F
Sbjct: 350 PAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.7 bits (238), Expect = 2e-20
 Identities = 63/371 (16%), Positives = 115/371 (30%), Gaps = 70/371 (18%)

Query: 93  NNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHL 152
           N   VL++  + +  L  P  L      + +  L +     +N++ S  A    L +L +
Sbjct: 40  NGNAVLNVGESGLTTL--PDCL-----PAHITTLVIP----DNNLTSLPALPPELRTLEV 88

Query: 153 SHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNK 212
           S N L  S+       L  L         +  +           L  L +       GN+
Sbjct: 89  SGNQLT-SLPV-LPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIF------GNQ 132

Query: 213 LLQSMGSFPSLNTLHLESNNFT------ATLTTTQELHN--------FTNLEYLTLDDSS 258
           L       P L  L +  N         + L      +N         + L+ L++ D+ 
Sbjct: 133 LTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ 192

Query: 259 LHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQI 318
                L S+ ++   L  L      +  + +         L+ L        ++ + L  
Sbjct: 193 -----LASLPTLPSELYKLWAYNNRLTSLPALPS-----GLKELI-------VSGNRLTS 235

Query: 319 IGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSL 378
           +      LK L +SG     N    L         L  L +  N L   LP  L + +S 
Sbjct: 236 LPVLPSELKELMVSG-----NRLTSLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSE 286

Query: 379 RILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI 438
             +++  N L+   +   L  +TS      S    R  ++       ++     A +  +
Sbjct: 287 TTVNLEGNPLS-ERTLQALREITSAPG--YSGPIIRFDMAGASAPRETRALHLAAADWLV 343

Query: 439 NGEINESHSLT 449
                E     
Sbjct: 344 PAREGEPAPAD 354

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 92.6 bits (230), Expect = 2e-19
 Identities = 69/413 (16%), Positives = 115/413 (27%), Gaps = 89/413 (21%)

Query: 297 KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQE 356
                L++  + +   T+    +      +  L +       N+   L         L+ 
Sbjct: 40  NGNAVLNVGESGL---TTLPDCLP---AHITTLVIPD-----NNLTSLPALPP---ELRT 85

Query: 357 LYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-I 415
           L +  N L  SLP        L I       L            + + +L +  N    +
Sbjct: 86  LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLTSL 136

Query: 416 PVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF-QLKSLSLSSNYGDSVTFPKFLY 474
           PV          L+     +N++        SL     +L  L   +N            
Sbjct: 137 PVLP------PGLQELSVSDNQLA-------SLPALPSELCKLWAYNN------------ 171

Query: 475 HQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVS 534
                          +   P       + L+ L + ++ LA    LP      L  L   
Sbjct: 172 --------------QLTSLPMLP----SGLQELSVSDNQLA---SLP-TLPSELYKLWAY 209

Query: 535 NNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDH 594
           NN     +P         L    +S N L  S+P        L+ L +S N+LT  +P  
Sbjct: 210 NNRLT-SLPALPS----GLKELIVSGNRL-TSLPVLPSE---LKELMVSGNRLT-SLPML 259

Query: 595 LAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLY 654
            +     L  LS+  N L   +   +  L +   + LEGN    E      +  +    Y
Sbjct: 260 PS----GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAPGY 313

Query: 655 LNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN 707
                                H+    + L      E    D   +    DN 
Sbjct: 314 SGPIIRFDMAGASAPRETRALHLAAA-DWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 89.6 bits (222), Expect = 2e-18
 Identities = 62/419 (14%), Positives = 118/419 (28%), Gaps = 91/419 (21%)

Query: 18  ARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSG 77
              +    L + ++ L  ++          +  L I  N +                   
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPD---CLPAHITTLVIPDNNLTSLP--------------- 77

Query: 78  TGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSI 137
                            L  L++SGN++ +L  P     L  LS         +     +
Sbjct: 78  ------------ALPPELRTLEVSGNQLTSL--PVLPPGLLELSIF-------SNPLTHL 116

Query: 138 LSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKL 197
            +     S L  L +  N L  S+          L+EL ++DN++ ++          +L
Sbjct: 117 PAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASLPAL-----PSEL 163

Query: 198 KSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDS 257
             L          N+L         L  L +  N    +L T       + L  L   ++
Sbjct: 164 CKLWAY------NNQLTSLPMLPSGLQELSVSDNQLA-SLPTL-----PSELYKLWAYNN 211

Query: 258 SLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQ 317
            L  SL          LK L +SG  +  +           L+ L        ++ + L 
Sbjct: 212 RL-TSLPALPS----GLKELIVSGNRLTSL-----PVLPSELKELM-------VSGNRLT 254

Query: 318 IIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS 377
            +      L  LS+       N    L + L  L+    + ++ N L             
Sbjct: 255 SLPMLPSGLLSLSVYR-----NQLTRLPESLIHLSSETTVNLEGNPLS-ERTLQ--ALRE 306

Query: 378 LRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 436
           +         +      +          L L+   + +P          +  +F  ++N
Sbjct: 307 ITSAPGYSGPII-RFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 87.6 bits (217), Expect = 7e-18
 Identities = 67/400 (16%), Positives = 120/400 (30%), Gaps = 68/400 (17%)

Query: 2   LDLSGNA----------------FNNNVLSSL-ARLSSLRSLYLSDNRLEGSIDVKELDS 44
           L++  +                   +N L+SL A    LR+L +S N+L  S+       
Sbjct: 45  LNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLP-VLPPG 102

Query: 45  LRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNE 104
           L +L         +         S L  L + G                 L+ L +S N+
Sbjct: 103 LLELSIFSNPLTHLPAL-----PSGLCKLWIFGNQLT-----SLPVLPPGLQELSVSDNQ 152

Query: 105 IDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAK 164
           + +L  P     L +L             NN + S     S L  L +S N L  S+   
Sbjct: 153 LASL--PALPSELCKL----------WAYNNQLTSLPMLPSGLQELSVSDNQLA-SLP-- 197

Query: 165 EFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLN 224
                S L +L   +N + ++           LK L +S      GN+L         L 
Sbjct: 198 --TLPSELYKLWAYNNRLTSLPAL-----PSGLKELIVS------GNRLTSLPVLPSELK 244

Query: 225 TLHLESNNFTATLTTTQEL-HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCE 283
            L +  N  T        L    + L  L++  + L   L +S+     S   +++ G  
Sbjct: 245 ELMVSGNRLT-------SLPMLPSGLLSLSVYRNQLT-RLPESLIH-LSSETTVNLEGNP 295

Query: 284 VNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRI 343
           ++   + Q      S         R  +  +       ++       L  +  G  +   
Sbjct: 296 LS-ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPAD 354

Query: 344 LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 383
                    +     +  + L  +  +        +I   
Sbjct: 355 RWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSW 394

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.7 bits (212), Expect = 3e-17
 Identities = 57/262 (21%), Positives = 89/262 (33%), Gaps = 64/262 (24%)

Query: 693 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 752
           C  +   +L++ ++ ++ +LP C  P  I  + +  N L   L          L TL++S
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCL-PAHITTLVIPDNNLT-SLPA----LPPELRTLEVS 89

Query: 753 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 812
            N L  S+P    GL +LS  +    +L           + L  L +  N L  L     
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSLPVLPP 141

Query: 813 DNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 872
               L  S N  +S                                        + S L 
Sbjct: 142 GLQELSVSDNQLASLPA-------------------------------------LPSELC 164

Query: 873 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 932
            L    N+L   +P     L   Q L++S N L  ++P   S L     L    N+L+  
Sbjct: 165 KLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSELY---KLWAYNNRLT-S 215

Query: 933 IPRQLVDLNTLAIFIVAYNNLS 954
           +P     L  L   IV+ N L+
Sbjct: 216 LPALPSGLKEL---IVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 72.6 bits (178), Expect = 3e-13
 Identities = 73/451 (16%), Positives = 133/451 (29%), Gaps = 94/451 (20%)

Query: 222 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 281
               L++  +  T   T    L    ++  L + D++L      S+ ++ P L+ L +SG
Sbjct: 41  GNAVLNVGESGLT---TLPDCL--PAHITTLVIPDNNL-----TSLPALPPELRTLEVSG 90

Query: 282 CEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSS 341
            ++  +      P    L         +                L  L + G+ L +   
Sbjct: 91  NQLTSL--PVLPPGLLELSIFSNPLTHLP----------ALPSGLCKLWIFGNQLTSLPV 138

Query: 342 RILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLT 401
                       LQEL + +N L  SLP   +    L  L    NQLT S+        +
Sbjct: 139 LP--------PGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPML----PS 181

Query: 402 SIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLS 460
            ++EL +S+N    +P     L    KL  ++ +   +    +          LK L +S
Sbjct: 182 GLQELSVSDNQLASLPTLPSEL---YKLWAYNNRLTSLPALPS---------GLKELIVS 229

Query: 461 SNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRL 520
            N                           +   P       ++L+ L +  + L     L
Sbjct: 230 GN--------------------------RLTSLPVLP----SELKELMVSGNRLT---SL 256

Query: 521 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL 580
           P+     L  L V  N     +P  +   L S    N+  N L      +      +   
Sbjct: 257 PMLPSG-LLSLSVYRNQLT-RLPESLIH-LSSETTVNLEGNPLSERTLQALRE---ITSA 310

Query: 581 DLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEI 640
              +  +        +           + + L              RW +          
Sbjct: 311 PGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPAD--RWHMFGQEDNADAF 368

Query: 641 PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 671
              L + S  +  ++ +     +I  WL  L
Sbjct: 369 SLFLDRLSETEN-FIKDAGFKAQISSWLAQL 398

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 4e-08
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 868 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 927
            +  A L++  + L   +P  +     I TL +  NNLT ++P     LR   +L++S N
Sbjct: 39  NNGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLT-SLPALPPELR---TLEVSGN 91

Query: 928 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWT 961
           +L+  +P     L  L+IF     +L        
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLC 124

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.0 bits (127), Expect = 5e-07
 Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 53/180 (29%)

Query: 786 IQLCRLNQLQLLDLSDNNLHGLIPSCFDN-TTLHESYNN-NSSPDKPFKTSFSISGPQGS 843
           ++ C  N   +L++ ++ L  L      + TTL    NN  S P                
Sbjct: 34  MRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA--------------- 78

Query: 844 VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 903
                                  +   L  L++S N+L   +P     L  +   +    
Sbjct: 79  -----------------------LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLT 114

Query: 904 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 963
           +L        +    +  L +  N+L+  +P     L  L    V+ N L+  +P   ++
Sbjct: 115 HLP-------ALPSGLCKLWIFGNQLT-SLPVLPPGLQEL---SVSDNQLA-SLPALPSE 162

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  112 bits (281), Expect = 4e-26
 Identities = 58/242 (23%), Positives = 97/242 (40%), Gaps = 13/242 (5%)

Query: 577 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 635
              +      L  E+PD ++    N   L+L  N ++  I    F  LR+L  L L  NH
Sbjct: 45  FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNH 99

Query: 636 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCR 694
                  + +  ++L  L L +N L+         L  L+ + +  N +E  IP   F R
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNR 158

Query: 695 LDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 752
           + SL+ LD+ +      +    F  L +++ ++L+   L    +         L  LDLS
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLS 215

Query: 753 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 812
            N+L+   P    GL  L  L +  + ++         L  L  ++L+ NNL  L    F
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275

Query: 813 DN 814
             
Sbjct: 276 TP 277

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  109 bits (273), Expect = 3e-25
 Identities = 59/260 (22%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 548 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 607
            I  +    N+  N +     +SF ++  L+ L LS N +   I         NL  L L
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119

Query: 608 SNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR 666
            +N L   I +  F  L  L+ L L  N        + ++  SL+ L L        I  
Sbjct: 120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178

Query: 667 -WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVH 725
                L  L+++ +   +L   IP     L  L  LD+S N++S                
Sbjct: 179 GAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLS---------------- 220

Query: 726 LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 785
                    ++ G+F     L  L +  + +     +  D L  L  +NLAHNNL     
Sbjct: 221 --------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272

Query: 786 IQLCRLNQLQLLDLSDNNLH 805
                L+ L+ + L  N  +
Sbjct: 273 DLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  107 bits (269), Expect = 1e-24
 Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 23/239 (9%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L+L  N      ++S   L  L  L LS N +  +I++   + L +L  L++  N++   
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTI 127

Query: 62  --MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSG-NEIDNLVVPQGLERLS 118
                  LSKLK L L     + +     F+   +L  LD+     +  +   +G     
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYI--SEGA--FE 182

Query: 119 RLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIN 178
            LS L+ L+L     N   + ++  L  L  L LS N L  +I    F  L +L++L + 
Sbjct: 183 GLSNLRYLNLAMC--NLREIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMI 239

Query: 179 DNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL----LQSMGSFPSLNTLHLESNNF 233
            ++I  +E    +  L+ L  ++L+       N L             L  +HL  N +
Sbjct: 240 QSQIQVIE-RNAFDNLQSLVEINLA------HNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  102 bits (257), Expect = 4e-23
 Identities = 58/252 (23%), Positives = 103/252 (40%), Gaps = 35/252 (13%)

Query: 21  SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSGT 78
           ++ R L L +N+++  I V     LR LE L +  N I    +    GL+ L +L L   
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 79  GFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSIL 138
               T     F   + L+ L +  N I+++  P      +R+  L++LDL        + 
Sbjct: 123 RLT-TIPNGAFVYLSKLKELWLRNNPIESI--PSYA--FNRIPSLRRLDLGE---LKRLS 174

Query: 139 S----SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGL 194
                +   LS+L  L+L+   L+  I       L  L+ELD++ N +  +     ++GL
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIR-PGSFQGL 230

Query: 195 RKLKSLDLSGVGIRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQE--LHNFTN 248
             L+ L +        +++      +F    SL  ++L  NN    LT           +
Sbjct: 231 MHLQKLWMI------QSQIQVIERNAFDNLQSLVEINLAHNN----LTLLPHDLFTPLHH 280

Query: 249 LEYLTLDDSSLH 260
           LE + L  +  +
Sbjct: 281 LERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 99.1 bits (247), Expect = 7e-22
 Identities = 60/287 (20%), Positives = 102/287 (35%), Gaps = 47/287 (16%)

Query: 648 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN 707
           +    +     NL  ++P  +      + + + +N ++      F  L  L+IL +S N+
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 708 ISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG 766
           I       F  L ++  + L  N L   +  G F   S L  L L  N +        + 
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158

Query: 767 LSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE---SYN 822
           +  L  L+L        +       L+ L+ L+L+  NL   IP+      L E   S N
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPNLTPLIKLDELDLSGN 217

Query: 823 NNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 881
           + S+     F+                                   L  L  L +  +++
Sbjct: 218 HLSAIRPGSFQG----------------------------------LMHLQKLWMIQSQI 243

Query: 882 VGHIPPQ-IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 927
              I      NL  +  +NL+HNNLT      F+ L H+E + L +N
Sbjct: 244 Q-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 97.1 bits (242), Expect = 3e-21
 Identities = 53/251 (21%), Positives = 98/251 (39%), Gaps = 34/251 (13%)

Query: 92  FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVAR-----LSS 146
             N  +L++  N+I  +           L  L+ L L  N      + ++       L++
Sbjct: 63  STNTRLLNLHENQIQII--KVNS--FKHLRHLEILQLSRNH-----IRTIEIGAFNGLAN 113

Query: 147 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 206
           L +L L  N L  +I    F  LS L+EL + +N I+++  S  +  +  L+ LDL    
Sbjct: 114 LNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPSLRRLDLG--- 168

Query: 207 IRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHIS 262
             +  +L   S G+F    +L  L+L   N    L     L     L+ L L  + L  +
Sbjct: 169 --ELKRLSYISEGAFEGLSNLRYLNLAMCN----LREIPNLTPLIKLDELDLSGNHLS-A 221

Query: 263 LLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGES 322
           +          L+ L M   ++  V+    F + +SL  +++    +   T     +   
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNL---TLLPHDLFTP 277

Query: 323 MPSLKYLSLSG 333
           +  L+ + L  
Sbjct: 278 LHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.0 bits (234), Expect = 3e-20
 Identities = 61/289 (21%), Positives = 110/289 (38%), Gaps = 66/289 (22%)

Query: 697 SLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 755
           + ++L++ +N I     + F  L  ++ + LS+N +   ++ G F   ++L TL+L  N 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 756 LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL-CRLNQLQLLDLSDNN-LHGLIPSCFD 813
           L          LS+L  L L +N +E  +P     R+  L+ LDL +   L  +    F+
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 814 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 873
                                                                 LS L  
Sbjct: 183 G-----------------------------------------------------LSNLRY 189

Query: 874 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 933
           L+L+   L   IP  +  L ++  L+LS N+L+   P +F  L H++ L +  +++    
Sbjct: 190 LNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

Query: 934 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY---DGNPFLC 979
                +L +L    +A+NNL+  +P     F   +         NP+ C
Sbjct: 248 RNAFDNLQSLVEINLAHNNLT-LLPHDL--FTPLHHLERIHLHHNPWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.3 bits (232), Expect = 5e-20
 Identities = 63/288 (21%), Positives = 105/288 (36%), Gaps = 55/288 (19%)

Query: 132 LCNNSILSSV-ARLS-SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSR 189
           +C    L  V   +S +   L+L  N +Q  I    F  L +LE L ++ N I  +E+  
Sbjct: 49  ICVRKNLREVPDGISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEI-- 105

Query: 190 GYRGLRKLKSLDLSGVGIRDGNKLLQSMGSF---PSLNTLHLESNNFTATLTTTQELHNF 246
                                       G+F    +LNTL L  N  T            
Sbjct: 106 ----------------------------GAFNGLANLNTLELFDNRLTTIPNGA--FVYL 135

Query: 247 TNLEYLTLDDSSLHISLLQSIGSIF---PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD 303
           + L+ L L   +  I  + S    F   PSL+ L +   +    +S   F    +L +L+
Sbjct: 136 SKLKELWL--RNNPIESIPS--YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191

Query: 304 MRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNND 363
           +    +    +        +  L  L LSG+ L    S I       L HLQ+L++  + 
Sbjct: 192 LAMCNLREIPNL-----TPLIKLDELDLSGNHL----SAIRPGSFQGLMHLQKLWMIQSQ 242

Query: 364 LRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 411
           ++        N  SL  ++++ N LT  +       L  +E + L +N
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.0 bits (169), Expect = 3e-12
 Identities = 48/274 (17%), Positives = 93/274 (33%), Gaps = 45/274 (16%)

Query: 269 SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGESMPSL 326
            I  + + L++   ++  +     F H + LE L +    I      +F       + +L
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNS-FKHLRHLEILQLSRNHIRTIEIGAF-----NGLANL 114

Query: 327 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVS-F 385
             L L  + L    + I +     L+ L+EL++ NN +     +      SLR LD+   
Sbjct: 115 NTLELFDNRL----TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170

Query: 386 NQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINES 445
            +L+  IS      L+++  L L+  + R    +  L    KL   D   N +       
Sbjct: 171 KRLS-YISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHL--SAIRP 224

Query: 446 HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLE 505
            S      L+ L +  +                        I++I        +N   L 
Sbjct: 225 GSFQGLMHLQKLWMIQS-----------------------QIQVI---ERNAFDNLQSLV 258

Query: 506 FLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQ 539
            + L +++L             L  + + +N + 
Sbjct: 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.9 bits (161), Expect = 3e-11
 Identities = 40/213 (18%), Positives = 63/213 (29%), Gaps = 58/213 (27%)

Query: 744 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 803
           ++   L+L  N +     +    L  L  L L+ N++          L  L  L+L DN 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 804 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 863
           L  +    F                                                   
Sbjct: 124 LTTIPNGAFVY------------------------------------------------- 134

Query: 864 QGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIES 921
               LS L  L L  N +   IP      +  ++ L+L        I    F  L ++  
Sbjct: 135 ----LSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 922 LDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 954
           L+L+   L  +IP  L  L  L    ++ N+LS
Sbjct: 190 LNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 884 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 943
            +P  I   T  + LNL  N +      +F +LRH+E L LS N +          L  L
Sbjct: 57  EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 944 AIFIVAYNNLS 954
               +  N L+
Sbjct: 115 NTLELFDNRLT 125

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  110 bits (278), Expect = 9e-26
 Identities = 58/257 (22%), Positives = 103/257 (40%), Gaps = 12/257 (4%)

Query: 527 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 586
           +   +  +       +P     I  +  Y N+  N +      +F ++  L+ L L  N 
Sbjct: 55  QFSKVVCTRRGLS-EVP---QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 587 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLS 645
           +  +I         +L  L L +N L   I S  F  L  LR L L  N        + +
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFN 168

Query: 646 KCSSLKGLYLNNNNLSGKIPR-WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDIS 704
           +  SL  L L        I       L  L+++ +   +++  +P     L  L+ L++S
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMS 226

Query: 705 DNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 763
            N+     P  F+ L S+K++ +  + +   ++   F   +SLV L+L++N L+    D 
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDL 285

Query: 764 IDGLSQLSHLNLAHNNL 780
              L  L  L+L HN  
Sbjct: 286 FTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  110 bits (277), Expect = 1e-25
 Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 13/242 (5%)

Query: 577 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 635
              +  +   L+ E+P  +     N  +L+L  N+++  I +  F  L +L  L L  N 
Sbjct: 56  FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS 110

Query: 636 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCR 694
                  + +  +SL  L L +N L+         L  L+ + +  N +E  IP   F R
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNR 169

Query: 695 LDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 752
           + SL  LD+ +      +    F  L ++K ++L    +              L  L++S
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMS 226

Query: 753 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 812
            N+     P    GLS L  L + ++ +          L  L  L+L+ NNL  L    F
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286

Query: 813 DN 814
             
Sbjct: 287 TP 288

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  107 bits (269), Expect = 1e-24
 Identities = 56/242 (23%), Positives = 94/242 (38%), Gaps = 29/242 (11%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKI--- 58
           L+L  N        +   L  L  L L  N +   I+V   + L  L  L++  N +   
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVI 138

Query: 59  --DKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSG-NEIDNLVVPQGLE 115
               F   + LSKL+ L L     + +     F+   +L  LD+    +++ +   +G  
Sbjct: 139 PSGAF---EYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYI--SEGA- 191

Query: 116 RLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEEL 175
               L  LK L+L     N   + ++  L  L  L +S N     I    F  LS+L++L
Sbjct: 192 -FEGLFNLKYLNLGMC--NIKDMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKL 247

Query: 176 DINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL----LQSMGSFPSLNTLHLESN 231
            + ++++  +E    + GL  L  L+L+       N L             L  LHL  N
Sbjct: 248 WVMNSQVSLIE-RNAFDGLASLVELNLA------HNNLSSLPHDLFTPLRYLVELHLHHN 300

Query: 232 NF 233
            +
Sbjct: 301 PW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.5 bits (243), Expect = 2e-21
 Identities = 59/254 (23%), Positives = 96/254 (37%), Gaps = 40/254 (15%)

Query: 92  FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-----ARLSS 146
            +N   L++  N I  +           L  L+ L L  N      +  +       L+S
Sbjct: 74  PSNTRYLNLMENNIQMI--QADT--FRHLHHLEVLQLGRNS-----IRQIEVGAFNGLAS 124

Query: 147 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 206
           L +L L  N L   I +  F+ LS L EL + +N I+++  S  +  +  L  LDL    
Sbjct: 125 LNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIP-SYAFNRVPSLMRLDLG--- 179

Query: 207 IRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHIS 262
             +  KL   S G+F    +L  L+L   N    +     L     LE L +  S  H  
Sbjct: 180 --ELKKLEYISEGAFEGLFNLKYLNLGMCN----IKDMPNLTPLVGLEELEM--SGNHFP 231

Query: 263 LLQSIGSIF---PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQII 319
            ++     F    SLK L +   +V+ ++    F    SL  L++    +   +S    +
Sbjct: 232 EIRP--GSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNL---SSLPHDL 285

Query: 320 GESMPSLKYLSLSG 333
              +  L  L L  
Sbjct: 286 FTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.0 bits (234), Expect = 3e-20
 Identities = 61/271 (22%), Positives = 99/271 (36%), Gaps = 56/271 (20%)

Query: 21  SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGF 80
           S+ R L L +N ++  I       L  LE L +G N I                      
Sbjct: 75  SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI---------------------- 111

Query: 81  KGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSS 140
               +V  F+   +L  L++  N +  +  P G      LSKL++L LR N      + S
Sbjct: 112 -RQIEVGAFNGLASLNTLELFDNWLTVI--PSGA--FEYLSKLRELWLRNNP-----IES 161

Query: 141 V-----ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLR 195
           +      R+ SL  L L        I    F+ L NL+ L++    I ++        L 
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN---LTPLV 218

Query: 196 KLKSLDLSGVGIRDGNKL--LQSMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLE 250
            L+ L++S      GN    ++  GSF    SL  L + ++  +             +L 
Sbjct: 219 GLEELEMS------GNHFPEIRP-GSFHGLSSLKKLWVMNSQVSLIERNA--FDGLASLV 269

Query: 251 YLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 281
            L L  ++L  SL   + +    L  L +  
Sbjct: 270 ELNLAHNNLS-SLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.5 bits (230), Expect = 1e-19
 Identities = 58/288 (20%), Positives = 100/288 (34%), Gaps = 64/288 (22%)

Query: 697 SLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 755
           + + L++ +NNI       F  L  ++ + L +N +  Q++ G F   +SL TL+L  N+
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 756 LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN-LHGLIPSCFDN 814
           L        + LS+L  L L +N +E        R+  L  LDL +   L  +    F+ 
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 815 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 874
                                                                L  L  L
Sbjct: 195 -----------------------------------------------------LFNLKYL 201

Query: 875 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 934
           +L    +     P +  L  ++ L +S N+     P +F  L  ++ L +  +++S    
Sbjct: 202 NLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259

Query: 935 RQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY---DGNPFLC 979
                L +L    +A+NNLS  +P     F             NP+ C
Sbjct: 260 NAFDGLASLVELNLAHNNLS-SLPHDL--FTPLRYLVELHLHHNPWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.6 bits (199), Expect = 8e-16
 Identities = 59/224 (26%), Positives = 85/224 (37%), Gaps = 17/224 (7%)

Query: 490 IGEFPNWLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE 545
           I         +   LE L L  +S+     G F         L  L++ +N     IP  
Sbjct: 87  IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN----GLASLNTLELFDNWLT-VIPSG 141

Query: 546 IGDILPSLVYFNISMNALDGSIPS-SFGNVIFLQFLDLSN-NKLTGEIPDHLAMCCVNLE 603
             + L  L    +  N +  SIPS +F  V  L  LDL    KL   I +       NL+
Sbjct: 142 AFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLK 199

Query: 604 FLSLSNNSLKG-HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG 662
           +L+L   ++K     +    L  L  L + GNHF    P S    SSLK L++ N+ +S 
Sbjct: 200 YLNLGMCNIKDMPNLTP---LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 663 KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN 706
                   L  L  + +  N+L       F  L  L  L +  N
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.2 bits (185), Expect = 4e-14
 Identities = 45/217 (20%), Positives = 68/217 (31%), Gaps = 42/217 (19%)

Query: 744 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 803
           S+   L+L  N +     D    L  L  L L  N++          L  L  L+L DN 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 804 LHGLIPSCFDN----TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKN 858
           L  +    F+       L    N   S P   F                           
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR------------------------- 169

Query: 859 IAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLR 917
                    +  L  LDL   K + +I       L  ++ LNL   N+   +P   + L 
Sbjct: 170 ---------VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLV 218

Query: 918 HIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 954
            +E L++S N      P     L++L    V  + +S
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.9 bits (174), Expect = 7e-13
 Identities = 47/274 (17%), Positives = 88/274 (32%), Gaps = 45/274 (16%)

Query: 269 SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGESMPSL 326
            I  + + L++    +  + +   F H   LE L +    I      +F       + SL
Sbjct: 72  GIPSNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAF-----NGLASL 125

Query: 327 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVS-F 385
             L L  + L    + I       L+ L+EL++ NN +     +      SL  LD+   
Sbjct: 126 NTLELFDNWL----TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181

Query: 386 NQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINES 445
            +L   IS      L +++ L L   + +    +  L     L+  +   N    EI   
Sbjct: 182 KKLE-YISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHFP-EI-RP 235

Query: 446 HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLE 505
            S      LK L + ++                           +        +    L 
Sbjct: 236 GSFHGLSSLKKLWVMNS--------------------------QVSLIERNAFDGLASLV 269

Query: 506 FLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQ 539
            L L +++L+          + L  L + +N + 
Sbjct: 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.4 bits (144), Expect = 3e-09
 Identities = 36/213 (16%), Positives = 64/213 (30%), Gaps = 59/213 (27%)

Query: 744 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 803
           +    +  +   L+  +P  I   S   +LNL  NN++         L+ L++L L  N+
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 804 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 863
           +  +    F+                                                  
Sbjct: 111 IRQIEVGAFNG------------------------------------------------- 121

Query: 864 QGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESL 922
               L+ L  L+L  N L   IP      L++++ L L +N +       F+ +  +  L
Sbjct: 122 ----LASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176

Query: 923 DLS-YNKLSGKIPRQLVDLNTLAIFIVAYNNLS 954
           DL    KL          L  L    +   N+ 
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  110 bits (278), Expect = 1e-25
 Identities = 67/444 (15%), Positives = 132/444 (29%), Gaps = 68/444 (15%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
              +          S  +L++L SL   ++ +    D+  ++ L  L +L    N I   
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNNITTL 79

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
            +S   + L  L              +      L  L+   N++  L        +S+  
Sbjct: 80  DLS-QNTNLTYLACDSNKLTNL----DVTPLTKLTYLNCDTNKLTKLD-------VSQNP 127

Query: 122 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNE 181
            L  L+   N      +S     + LT L    N     I   +    + L  LD + N+
Sbjct: 128 LLTYLNCARNTLTEIDVSH---NTQLTELDCHLNKK---ITKLDVTPQTQLTTLDCSFNK 181

Query: 182 IDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTT 240
           I  ++VS      + L  L+         N + +  +     L  L   SN       T 
Sbjct: 182 ITELDVS----QNKLLNRLNCD------TNNITKLDLNQNIQLTFLDCSSNKL-----TE 226

Query: 241 QELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLE 300
            ++   T L Y     + L     +   S    L  L     +    L      H   L 
Sbjct: 227 IDVTPLTQLTYFDCSVNPLT----ELDVSTLSKLTTLHCIQTD----LLEIDLTHNTQLI 278

Query: 301 HLDMRFARIALNTSFLQIIGES-MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 359
           +              ++ +  +    L  L    + +           L     L  LY+
Sbjct: 279 YFQA------EGCRKIKELDVTHNTQLYLLDCQAAGITELD-------LSQNPKLVYLYL 325

Query: 360 DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSL 419
           +N +L   L   +++ T L+ L      +      S +  + ++     +       +++
Sbjct: 326 NNTELT-ELD--VSHNTKLKSLSCVNAHIQ---DFSSVGKIPALNNNFEAEGQT---ITM 376

Query: 420 EPLFNHSKLKIFDAKNNEINGEIN 443
                 +         + ++   N
Sbjct: 377 PKETLTNNSLTIAVSPDLLDQFGN 400

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  102 bits (257), Expect = 4e-23
 Identities = 68/475 (14%), Positives = 147/475 (30%), Gaps = 97/475 (20%)

Query: 350 PLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 409
           P  +         +++ +         +L  LD   + +T     + +  LT + +L  +
Sbjct: 16  PDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICT 72

Query: 410 NNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTF 469
           +N+         L  ++ L      +N++      +  +TP  +L  L+  +N       
Sbjct: 73  SNNITTL----DLSQNTNLTYLACDSNKL-----TNLDVTPLTKLTYLNCDTN------- 116

Query: 470 PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLR 529
                   +L + ++S               N  L +L    ++L     + +  + +L 
Sbjct: 117 --------KLTKLDVS--------------QNPLLTYLNCARNTLT---EIDVSHNTQLT 151

Query: 530 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 589
            LD   N     + V        L   + S N +             L  L+   N +T 
Sbjct: 152 ELDCHLNKKITKLDVT---PQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT- 204

Query: 590 EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 649
           ++  +     + L FL  S+N L     +    L  L +     N    E+   +S  S 
Sbjct: 205 KLDLNQ---NIQLTFLDCSSNKLTEIDVT---PLTQLTYFDCSVNPL-TELD--VSTLSK 255

Query: 650 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 709
           L  L+    +L  +I   L +   L +           +  +      L +LD     I+
Sbjct: 256 LTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT 310

Query: 710 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 769
             L                                 LV L L+   L   +   +   ++
Sbjct: 311 -ELD--------------------------LSQNPKLVYLYLNNTELT-ELD--VSHNTK 340

Query: 770 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNN 824
           L  L+  + +++    +   ++  L     ++     +      N +L  + + +
Sbjct: 341 LKSLSCVNAHIQDFSSVG--KIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (251), Expect = 2e-22
 Identities = 76/410 (18%), Positives = 143/410 (34%), Gaps = 47/410 (11%)

Query: 548 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG--EIPDHLAMCCVNLEFL 605
           D   S V     M A D     S   +  L  LD  N+ +T    I          L  L
Sbjct: 18  DNFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSITDMTGIEK-----LTGLTKL 69

Query: 606 SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP 665
             ++N++     S      NL +L  + N     +   ++  + L  L  + N L+ K+ 
Sbjct: 70  ICTSNNITTLDLS---QNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLD 122

Query: 666 RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVH 725
             +     L ++   +N L     ++      L  LD   N     L        +  + 
Sbjct: 123 --VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVTPQT-QLTTLD 176

Query: 726 LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 785
            S N    ++ E        L  L+   N +   +   ++   QL+ L+ + N L     
Sbjct: 177 CSFN----KITELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE--- 226

Query: 786 IQLCRLNQLQLLDLSDNNLHGLIPSCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSV 844
           I +  L QL   D S N L  L  S     TTLH    +    D    T       +G  
Sbjct: 227 IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR 286

Query: 845 EKKILEIFEFTTKNIAYAYQGRVLSL-------LAGLDLSCNKLVGHIPPQIGNLTRIQT 897
           + K L++   T   +       +  L       L  L L+  +L   +   + + T++++
Sbjct: 287 KIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKS 343

Query: 898 LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 947
           L+  + ++      +   +  + +   +  +    +P++ +  N+L I +
Sbjct: 344 LSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAV 390

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 94.0 bits (234), Expect = 3e-20
 Identities = 79/468 (16%), Positives = 136/468 (29%), Gaps = 51/468 (10%)

Query: 504 LEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 563
                     +     +       L  LD  N++      +E    L  L     + N +
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEK---LTGLTKLICTSNNI 76

Query: 564 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSL 623
             ++         L +L   +NKLT      L      L +L+   N L     S     
Sbjct: 77  T-TLD--LSQNTNLTYLACDSNKLTNLDVTPL----TKLTYLNCDTNKLTKLDVS---QN 126

Query: 624 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 683
             L +L    N    EI   +S  + L  L  + N    K+   +     L  +    N 
Sbjct: 127 PLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 684 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC 743
           +     ++  +   L  L+   NNI+  L        +  +  S N    +L E      
Sbjct: 182 ITE---LDVSQNKLLNRLNCDTNNIT-KLDLNQNI-QLTFLDCSSN----KLTEIDVTPL 232

Query: 744 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 803
           + L   D S N L   +      LS+L+ L+    +L     I L    QL         
Sbjct: 233 TQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCR 286

Query: 804 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 863
               +     NT L+      +       T   +S     +    L   E T  ++++  
Sbjct: 287 KIKELDVT-HNTQLYLLDCQAAGI-----TELDLSQNP-KLVYLYLNNTELTELDVSH-- 337

Query: 864 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 923
                + L  L      +       +G +  +     +          T +N     ++ 
Sbjct: 338 ----NTKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS 391

Query: 924 LSYNKLSG---KIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFN 968
                  G    I      +   A   + + NLS   P  T  F + N
Sbjct: 392 PDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSEN 439

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 93.2 bits (232), Expect = 6e-20
 Identities = 81/504 (16%), Positives = 140/504 (27%), Gaps = 125/504 (24%)

Query: 121 SKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 180
                          +   S  +L++LTSL   ++ +    D    + L+ L +L    N
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSN 74

Query: 181 EIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTT 239
            I  +++S        L  L          NKL    +     L  L+ ++N       T
Sbjct: 75  NITTLDLS----QNTNLTYLACD------SNKLTNLDVTPLTKLTYLNCDTNKL-----T 119

Query: 240 TQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSL 299
             ++     L YL    +               +L  + +S                  L
Sbjct: 120 KLDVSQNPLLTYLNCARN---------------TLTEIDVSHN--------------TQL 150

Query: 300 EHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 359
             LD        N    ++       L  L  S      N    LD  +     L  L  
Sbjct: 151 TELDCHL-----NKKITKLDVTPQTQLTTLDCSF-----NKITELD--VSQNKLLNRLNC 198

Query: 360 DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSL 419
           D N++   L   L     L  LD S N+LT       +  LT +     S N      + 
Sbjct: 199 DTNNIT-KLD--LNQNIQLTFLDCSSNKLT----EIDVTPLTQLTYFDCSVNPL----TE 247

Query: 420 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 479
             +   SKL                         L  + L+ N               +L
Sbjct: 248 LDVSTLSKLTTLHCIQT----------------DLLEIDLTHNT--------------QL 277

Query: 480 KEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQ 539
              +    + I E     + +NT+L  L      +     L +  + +L +L ++N    
Sbjct: 278 IYFQAEGCRKIKELD---VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT 331

Query: 540 GHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCC 599
             + V        L   +     +      S G +  L     +  +             
Sbjct: 332 -ELDVS---HNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI----------- 374

Query: 600 VNLEFLSLSNNSLKGHIFSRIFSL 623
             +   +L+NNSL   +   +   
Sbjct: 375 -TMPKETLTNNSLTIAVSPDLLDQ 397

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.7 bits (210), Expect = 3e-17
 Identities = 71/444 (15%), Positives = 130/444 (29%), Gaps = 60/444 (13%)

Query: 220 FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSM 279
           FP  N     +  F    T T        L  L     +  I+ +  I      L  L  
Sbjct: 15  FPDDNFASEVAAAFEMQATDTISEEQLATLTSLDC--HNSSITDMTGIEK-LTGLTKLIC 71

Query: 280 SGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTN 339
           +       ++        +L +L     ++        +    +  L YL+   + L   
Sbjct: 72  TSNN----ITTLDLSQNTNLTYLACDSNKLT------NLDVTPLTKLTYLNCDTNKLTKL 121

Query: 340 SSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVH 399
                   +     L  L    N L   +   +++ T L  LD   N+    I+   +  
Sbjct: 122 D-------VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKK---ITKLDVTP 168

Query: 400 LTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLS 458
            T +  L  S N    + VS      +  L   +   N I         L    QL  L 
Sbjct: 169 QTQLTTLDCSFNKITELDVS-----QNKLLNRLNCDTNNI-----TKLDLNQNIQLTFLD 218

Query: 459 LSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPF 518
            SSN    +          +L   + S    + E         +KL  L+ +   L    
Sbjct: 219 CSSNKLTEIDVTPLT----QLTYFDCSVNP-LTELDVS---TLSKLTTLHCIQTDLL--- 267

Query: 519 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 578
            + +  + +L +           + V        L   +     +   +         L 
Sbjct: 268 EIDLTHNTQLIYFQAEGCRKIKELDVT---HNTQLYLLDCQAAGIT-ELD--LSQNPKLV 321

Query: 579 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 638
           +L L+N +LT E+          L+ LS  N  ++   FS +  +  L          + 
Sbjct: 322 YLYLNNTELT-ELDVSH---NTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTIT 375

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSG 662
              ++L+  S    +  +  +  G
Sbjct: 376 MPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 83.2 bits (206), Expect = 1e-16
 Identities = 63/390 (16%), Positives = 120/390 (30%), Gaps = 69/390 (17%)

Query: 566 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRN 625
           S    F +  F   +  +      +           L  L   N+S+     + I  L  
Sbjct: 10  SFNDWFPDDNFASEVAAAFEMQATDTISEEQ--LATLTSLDCHNSSITD--MTGIEKLTG 65

Query: 626 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 685
           L  L+   N+    +   LS+ ++L  L  ++N L+  +   +  L  L ++    N L 
Sbjct: 66  LTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT 119

Query: 686 GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSS 745
               ++  +   L  L+ + N ++  +        + ++    N     + +      + 
Sbjct: 120 ---KLDVSQNPLLTYLNCARNTLT-EIDVSHNT-QLTELDCHLNKK---ITKLDVTPQTQ 171

Query: 746 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 805
           L TLD S+N +   +   +     L+ LN   NN+     + L +  QL  LD S N L 
Sbjct: 172 LTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT 225

Query: 806 GLIPSCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQ 864
            +  +     T    S N  +  D                                    
Sbjct: 226 EIDVTPLTQLTYFDCSVNPLTELDV----------------------------------- 250

Query: 865 GRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 924
              LS L  L      L+  I   + + T++               L  ++   +  LD 
Sbjct: 251 -STLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKI--KELDVTHNTQLYLLDC 304

Query: 925 SYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 954
               ++     Q   L  L    +    L+
Sbjct: 305 QAAGITELDLSQNPKLVYL---YLNNTELT 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 71.6 bits (176), Expect = 4e-13
 Identities = 42/278 (15%), Positives = 78/278 (28%), Gaps = 54/278 (19%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 60
            L+ + N      +S     + L  L    N+    I   ++     L  LD   NKI +
Sbjct: 131 YLNCARNTLTEIDVSH---NTQLTELDCHLNKK---ITKLDVTPQTQLTTLDCSFNKITE 184

Query: 61  FMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRL 120
             VS+    L  L              + +    L  LD S N++  +        ++ L
Sbjct: 185 LDVSQ-NKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTEI-------DVTPL 232

Query: 121 SKLKKLDLRGN-----------------LCNNSILS-SVARLSSLTSLHLSHNILQGSID 162
           ++L   D   N                      +L   +   + L             +D
Sbjct: 233 TQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD 292

Query: 163 AKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSFP 221
                  + L  LD     I  +++S       KL  L L+        +L +  +    
Sbjct: 293 ---VTHNTQLYLLDCQAAGITELDLS----QNPKLVYLYLN------NTELTELDVSHNT 339

Query: 222 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL 259
            L +L   + +    +     +     L      +   
Sbjct: 340 KLKSLSCVNAH----IQDFSSVGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 5e-05
 Identities = 24/172 (13%), Positives = 46/172 (26%), Gaps = 11/172 (6%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 60
           ++              +   + L  L      +   +D   L     L  L +   ++ +
Sbjct: 277 LIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD---LSQNPKLVYLYLNNTELTE 332

Query: 61  FMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQG-LERLSR 119
             VS   +KLKSL       +   D         L     +  +   +         L+ 
Sbjct: 333 LDVSH-NTKLKSLSCVNAHIQ---DFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTI 388

Query: 120 LSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSN 171
                 LD  GN    +I      +    +  ++   L     A  +   S 
Sbjct: 389 AVSPDLLDQFGNP--MNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSE 438

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  109 bits (272), Expect = 1e-24
 Identities = 55/264 (20%), Positives = 97/264 (36%), Gaps = 26/264 (9%)

Query: 14  LSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSL 73
           +      +      L    +    D    + L  ++++    + I      + L  +  L
Sbjct: 14  IFPDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKL 70

Query: 74  GLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLC 133
            L+G       D++   +  NL  L +  N+I +      L  L  L KLK L L  N  
Sbjct: 71  FLNGNKLT---DIKPLTNLKNLGWLFLDENKIKD------LSSLKDLKKLKSLSLEHNGI 121

Query: 134 NNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRG 193
           ++  ++ +  L  L SL+L +N +    D      L+ L+ L + DN+I ++       G
Sbjct: 122 SD--INGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIV---PLAG 173

Query: 194 LRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLT 253
           L KL++L LS   I D    L+++    +L+ L L S              N      + 
Sbjct: 174 LTKLQNLYLSKNHISD----LRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPNTVK 227

Query: 254 LDDSSLHISLLQSIGSIFPSLKNL 277
             D SL    + S    +      
Sbjct: 228 NTDGSLVTPEIISDDGDYEKPNVK 251

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  105 bits (264), Expect = 1e-23
 Identities = 62/261 (23%), Positives = 108/261 (41%), Gaps = 29/261 (11%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           +  + +   +  +  +  L ++  L+L+ N+L    D+K L +L++L  L +  NKI   
Sbjct: 48  IIANNSDIKS--VQGIQYLPNVTKLFLNGNKLT---DIKPLTNLKNLGWLFLDENKIKDL 102

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
              K L KLKSL L   G     D+        LE L +  N+I +      +  LSRL+
Sbjct: 103 SSLKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKITD------ITVLSRLT 153

Query: 122 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNE 181
           KL  L L  N    S +  +A L+ L +L+LS N +    D +    L NL+ L++   E
Sbjct: 154 KLDTLSLEDN--QISDIVPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQE 208

Query: 182 IDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQ 241
             N  ++     L    ++  +     DG+ +   + S    +    E  N    L    
Sbjct: 209 CLNKPINH-QSNLVVPNTVKNT-----DGSLVTPEIIS----DDGDYEKPNVKWHLPEFT 258

Query: 242 ELHNFTNLEYLTLDDSSLHIS 262
              +F   + +T+  +     
Sbjct: 259 NEVSFIFYQPVTIGKAKARFH 279

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 99.8 bits (248), Expect = 1e-21
 Identities = 49/237 (20%), Positives = 90/237 (37%), Gaps = 28/237 (11%)

Query: 48  LEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDN 107
           + E       I +       ++     L         D    +  N+++ +  + ++I +
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKS 57

Query: 108 LVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFD 167
                 ++ +  L  + KL L GN    + +  +  L +L  L L  N ++   D     
Sbjct: 58  ------VQGIQYLPNVTKLFLNGN--KLTDIKPLTNLKNLGWLFLDENKIK---DLSSLK 106

Query: 168 SLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLH 227
            L  L+ L +  N I ++    G   L +L+SL L    I D    +  +     L+TL 
Sbjct: 107 DLKKLKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITD----ITVLSRLTKLDTLS 159

Query: 228 LESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEV 284
           LE N     ++    L   T L+ L L  +  HIS L+++     +L  L +   E 
Sbjct: 160 LEDNQ----ISDIVPLAGLTKLQNLYLSKN--HISDLRALAG-LKNLDVLELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 89.8 bits (222), Expect = 1e-18
 Identities = 53/316 (16%), Positives = 103/316 (32%), Gaps = 65/316 (20%)

Query: 172 LEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESN 231
           + E       I  +          +    +L    + D      +     S++ +   ++
Sbjct: 1   MGETITVSTPIKQIF---PDDAFAETIKDNLKKKSVTD----AVTQNELNSIDQIIANNS 53

Query: 232 NFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQ 291
           +    + + Q +    N+  L L+           +  I P                   
Sbjct: 54  D----IKSVQGIQYLPNVTKLFLNG--------NKLTDIKP------------------- 82

Query: 292 GFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILD-QGLCP 350
              + K+L  L +   +I  + S L    + +  LK LSL  +        I D  GL  
Sbjct: 83  -LTNLKNLGWLFLDENKIK-DLSSL----KDLKKLKSLSLEHN-------GISDINGLVH 129

Query: 351 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 410
           L  L+ LY+ NN +       L+  T L  L +  NQ++      PL  LT ++ L LS 
Sbjct: 130 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSK 184

Query: 411 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 470
           NH      L  L     L + +  + E   +       +      ++  +     S+  P
Sbjct: 185 NHIS---DLRALAGLKNLDVLELFSQECLNKPIN--HQSNLVVPNTVKNTDG---SLVTP 236

Query: 471 KFLYHQHELKEAELSH 486
           + +    + ++  +  
Sbjct: 237 EIISDDGDYEKPNVKW 252

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 85.5 bits (211), Expect = 3e-17
 Identities = 52/311 (16%), Positives = 104/311 (33%), Gaps = 23/311 (7%)

Query: 550 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 609
               +  N+   ++  ++      +  +  +  +N+ +   +   +     N+  L L+ 
Sbjct: 20  FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYL-PNVTKLFLNG 74

Query: 610 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 669
           N L       + +L+NL WL L+ N  + ++  SL     LK L L +N +S  I   L 
Sbjct: 75  NKLTD--IKPLTNLKNLGWLFLDENK-IKDL-SSLKDLKKLKSLSLEHNGIS-DIN-GLV 128

Query: 670 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 729
           +L  L+ + +  N +         RL  L  L + DN IS  +        ++ ++LSKN
Sbjct: 129 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKN 185

Query: 730 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 789
            +   L+        +L  L+L          +    L   + +     +L     I   
Sbjct: 186 HIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 242

Query: 790 RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL 849
              +        N    L     + + +             F    +    +       +
Sbjct: 243 GDYE------KPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDV 296

Query: 850 EIFEFTTKNIA 860
           +     TK  A
Sbjct: 297 DGTVIKTKVEA 307

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.6 bits (193), Expect = 4e-15
 Identities = 46/294 (15%), Positives = 96/294 (32%), Gaps = 32/294 (10%)

Query: 292 GFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPL 351
               F      +++   +  +          + S+  +  + S +      +  QG+  L
Sbjct: 16  PDDAFAETIKDNLKKKSVT-DAVTQ----NELNSIDQIIANNSDI----KSV--QGIQYL 64

Query: 352 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 411
            ++ +L+++ N L    P  L N  +L  L +  N++      S L  L  ++ L L +N
Sbjct: 65  PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK---DLSSLKDLKKLKSLSLEHN 119

Query: 412 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 471
                  +  L +  +L+     NN+I  +I     LT   +L +LSL  N    +    
Sbjct: 120 GIS---DINGLVHLPQLESLYLGNNKIT-DITVLSRLT---KLDTLSLEDNQISDIVP-- 170

Query: 472 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFL 531
            L    +L+   LS    I +     L     L+ L L +            +      +
Sbjct: 171 -LAGLTKLQNLYLSKNH-ISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 532 DVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 585
             ++ +      +            N+  +  + +   SF     +        
Sbjct: 227 KNTDGSLVTPEIISDDGDYEKP---NVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.9 bits (173), Expect = 1e-12
 Identities = 48/331 (14%), Positives = 96/331 (29%), Gaps = 59/331 (17%)

Query: 650 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 709
           +      +  +    P             + K  +   +      L+S+  +  ++++I 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 710 GSLPSCFYPLSIKQVHLSKNMLHGQLKE-GTFFNCSSLVTLDLSYNYLNGSIPDWIDGLS 768
            S+    Y  ++ ++ L+ N    +L +     N  +L  L L  N +   +   +  L 
Sbjct: 57  -SVQGIQYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLK 109

Query: 769 QLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNN 824
           +L  L+L HN +     +    L QL+ L L +N +  +  +         TL    N  
Sbjct: 110 KLKSLSLEHNGISDINGLV--HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN-- 163

Query: 825 SSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH 884
                                 +I +I                L+ L  L LS N +   
Sbjct: 164 ----------------------QISDIVPLAG-----------LTKLQNLYLSKNHIS-D 189

Query: 885 IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLA 944
           +   +  L  +  L L             SNL    ++  +   L    P  + D     
Sbjct: 190 LRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYE 246

Query: 945 IFIVAYNNLSGKIPEWTAQFATFNKSSYDGN 975
              V ++            +           
Sbjct: 247 KPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  104 bits (262), Expect = 3e-24
 Identities = 52/281 (18%), Positives = 110/281 (39%), Gaps = 23/281 (8%)

Query: 528 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPS-SFGNVIFLQFLDLSNNK 586
           ++ LD+SNN    +I         +L    ++ N ++ +I   SF ++  L+ LDLS N 
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111

Query: 587 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIP-QSL 644
           L+  +         +L FL+L  N  K    + +FS L  L+ L +       +I  +  
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 645 SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDIS 704
           +  + L+ L ++ ++L    P+ L +++ + H+++        + +      S++ L++ 
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230

Query: 705 DNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 764
           D ++     S                        +     +   + ++   L   +   +
Sbjct: 231 DTDLDTFHFSELSTGET----------------NSLIKKFTFRNVKITDESLF-QVMKLL 273

Query: 765 DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 805
           + +S L  L  + N L+        RL  LQ + L  N   
Sbjct: 274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  103 bits (258), Expect = 8e-24
 Identities = 63/298 (21%), Positives = 106/298 (35%), Gaps = 38/298 (12%)

Query: 640 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSL 698
           IP  L+   ++K L L+NN ++      L     LQ +V+  N +   I  + F  L SL
Sbjct: 46  IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSL 102

Query: 699 QILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 757
           + LD+S N +S    S F PL S+  ++L  N      +   F + + L  L +      
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 758 GSIPD-WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 816
             I      GL+ L  L +  ++L+   P  L  +  +  L L       L+    D T+
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222

Query: 817 LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSL-----L 871
                                     SVE   L   +  T + +    G   SL      
Sbjct: 223 --------------------------SVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 872 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 929
             + ++   L   +   +  ++ +  L  S N L       F  L  ++ + L  N  
Sbjct: 257 RNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  102 bits (257), Expect = 1e-23
 Identities = 72/313 (23%), Positives = 114/313 (36%), Gaps = 52/313 (16%)

Query: 110 VPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSL 169
           +P GL        +K LDL  N       S + R  +L +L L+ N +  +I+   F SL
Sbjct: 46  IPSGL-----TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSL 99

Query: 170 SNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL--LQSMGSFPSLNTLH 227
            +LE LD++ N + N+  S  ++ L  L  L+L G      N    L     F  L  L 
Sbjct: 100 GSLEHLDLSYNYLSNLS-SSWFKPLSSLTFLNLLG------NPYKTLGETSLFSHLTKLQ 152

Query: 228 LESNNFTATLTTTQE--LHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVN 285
           +       T T  Q       T LE L +D S L                          
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ------------------------- 187

Query: 286 GVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILD 345
                +     +++ HL +   +       L+I  +   S++ L L  + L T     L 
Sbjct: 188 -SYEPKSLKSIQNVSHLILHMKQH---ILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

Query: 346 QG----LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLT 401
            G    L      + + I +  L   +   L   + L  L+ S NQL  S+       LT
Sbjct: 244 TGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLT 301

Query: 402 SIEELRLSNNHFR 414
           S++++ L  N + 
Sbjct: 302 SLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 97.9 bits (244), Expect = 5e-22
 Identities = 54/267 (20%), Positives = 104/267 (38%), Gaps = 25/267 (9%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           LDLS N       S L R  +L++L L+ N +  +I+     SL  LE LD+  N +   
Sbjct: 57  LDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNL 115

Query: 62  MVS--KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNE-IDNLVVPQGLERLS 118
             S  K LS L  L L G  +K   +   F     L++L +   +    +   +     +
Sbjct: 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI--QRKD--FA 171

Query: 119 RLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIN 178
            L+ L++L++  +   +    S+  + +++ L L        +     D  S++E L++ 
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELR 230

Query: 179 DNEIDNVE-------VSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESN 231
           D ++D           +         +++ ++   +    KLL  +     L  L    N
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI---SGLLELEFSRN 287

Query: 232 NFTATLTTTQE--LHNFTNLEYLTLDD 256
                L +  +      T+L+ + L  
Sbjct: 288 Q----LKSVPDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 91.7 bits (228), Expect = 7e-20
 Identities = 60/292 (20%), Positives = 112/292 (38%), Gaps = 45/292 (15%)

Query: 21  SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGF 80
            +++SL LS+NR+   I   +L    +L+ L +  N I+                     
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN--------------------- 89

Query: 81  KGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN-LCNNSILS 139
             T +   F S  +LE LD+S N + NL           LS L  L+L GN        S
Sbjct: 90  --TIEEDSFSSLGSLEHLDLSYNYLSNL--SSSW--FKPLSSLTFLNLLGNPYKTLGETS 143

Query: 140 SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKS 199
             + L+ L  L + +      I  K+F  L+ LEEL+I+ +++ + E  +  + ++ +  
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-PKSLKSIQNVSH 202

Query: 200 LDLSG-------VGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYL 252
           L L             D    ++ +     L    L++ +F+    +T E ++       
Sbjct: 203 LILHMKQHILLLEIFVDVTSSVECL----ELRDTDLDTFHFSE--LSTGETNSLIKKFTF 256

Query: 253 T-LDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD 303
             +  +   +  +  + +    L  L  S  ++  V  G  F    SL+ + 
Sbjct: 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI-FDRLTSLQKIW 307

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.9 bits (226), Expect = 1e-19
 Identities = 55/305 (18%), Positives = 105/305 (34%), Gaps = 54/305 (17%)

Query: 92  FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-----ARLSS 146
              ++ LD+S N I  +        L R   L+ L L  N      ++++     + L S
Sbjct: 51  TEAVKSLDLSNNRITYI--SNSD--LQRCVNLQALVLTSNG-----INTIEEDSFSSLGS 101

Query: 147 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 206
           L  L LS+N L  ++ +  F  LS+L  L++  N    +  +  +  L KL+ L +    
Sbjct: 102 LEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN-- 158

Query: 207 IRDGNKLLQSM--GSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHI 261
                     +    F     L  L +++++  +    +  L +  N+ +L L       
Sbjct: 159 ----MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS--LKSIQNVSHLILHMKQHI- 211

Query: 262 SLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE 321
                                    +L         S+E L++R   +          GE
Sbjct: 212 -------------------------LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246

Query: 322 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 381
           +   +K  +     +   S   + + L  ++ L EL    N L+          TSL+ +
Sbjct: 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306

Query: 382 DVSFN 386
            +  N
Sbjct: 307 WLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 57/316 (18%), Positives = 105/316 (33%), Gaps = 75/316 (23%)

Query: 376 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 435
            +++ LD+S N++T  IS+S L    +++ L L++N      ++E          F    
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN---TIEE-------DSFS--- 97

Query: 436 NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 495
                      SL     L+ L LS N                       ++  +    +
Sbjct: 98  -----------SLG---SLEHLDLSYN-----------------------YLSNL---SS 117

Query: 496 WLLENNTKLEFLYLVNDSL-----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL 550
              +  + L FL L+ +          F        +L+ L V N +    I  +    L
Sbjct: 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFS----HLTKLQILRVGNMDTFTKIQRKDFAGL 173

Query: 551 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 610
             L    I  + L    P S  ++  +  L L   +    + +       ++E L L + 
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDT 232

Query: 611 SLKGHIFSRIFS--------LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG 662
            L    FS + +            R + +       ++ + L++ S L  L  + N L  
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS 291

Query: 663 KIPRW-LGNLKGLQHI 677
            +P      L  LQ I
Sbjct: 292 -VPDGIFDRLTSLQKI 306

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.8 bits (197), Expect = 6e-16
 Identities = 38/186 (20%), Positives = 79/186 (42%), Gaps = 10/186 (5%)

Query: 2   LDLSGNAFNNNVLSSL-ARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 60
           L+L GN +     +SL + L+ L+ L + +      I  K+   L  LEEL+I  + +  
Sbjct: 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188

Query: 61  FMVS--KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNL---VVPQGL- 114
           +     K +  +  L L              D  +++E L++   ++D      +  G  
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247

Query: 115 ERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEE 174
             L +    + + +        ++  + ++S L  L  S N L+ S+    FD L++L++
Sbjct: 248 NSLIKKFTFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQK 305

Query: 175 LDINDN 180
           + ++ N
Sbjct: 306 IWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.9 bits (174), Expect = 5e-13
 Identities = 41/255 (16%), Positives = 75/255 (29%), Gaps = 49/255 (19%)

Query: 744 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL-CRLNQLQLLDLSDN 802
            ++ +LDLS N +       +     L  L L  N +   +       L  L+ LDLS N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 803 NLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKN 858
            L  L  S F      T L+   N                            + E     
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGN------------------------PYKTLGE----- 141

Query: 859 IAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLR 917
                    L+ L  L +        I  +    LT ++ L +  ++L    P +  +++
Sbjct: 142 ---TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198

Query: 918 HIESLDLSYNKLSGKIPR---------QLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFN 968
           ++  L L   +    +           + ++L    +    ++ LS        +  TF 
Sbjct: 199 NVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257

Query: 969 KSSYDGNPFLCGLPL 983
                       + L
Sbjct: 258 NVKITDESLFQVMKL 272

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 42/216 (19%), Positives = 66/216 (30%), Gaps = 62/216 (28%)

Query: 743 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 802
           C        S   LN SIP  +     +  L+L++N +       L R   LQ L L+ N
Sbjct: 30  CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86

Query: 803 NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 862
            ++ +    F +                                                
Sbjct: 87  GINTIEEDSFSS------------------------------------------------ 98

Query: 863 YQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIP--LTFSNLRHI 919
                L  L  LDLS N L  ++       L+ +  LNL  N    T+     FS+L  +
Sbjct: 99  -----LGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKL 151

Query: 920 ESLDLSYNKLSGKIPRQ-LVDLNTLAIFIVAYNNLS 954
           + L +       KI R+    L  L    +  ++L 
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  106 bits (266), Expect = 4e-24
 Identities = 85/446 (19%), Positives = 161/446 (36%), Gaps = 56/446 (12%)

Query: 46  RDLEELDIGGNKIDKFMVS---KGLSKLKSLGLSGTGFKGTFDVREFDSF----NNLEVL 98
            D++ LDI   ++     +     L + + + L   G       ++  S       L  L
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAEL 61

Query: 99  DMSGNEIDNLVVPQGLERLSRLS-KLKKLDLRGNL----CNNSILSSVARLSSLTSLHLS 153
           ++  NE+ ++ V   L+ L   S K++KL L+           + S++  L +L  LHLS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 154 HNILQGS----IDAKEFDSLSNLEELDINDNEIDNV---EVSRGYRGLRKLKSLDLSGVG 206
            N+L  +    +     D    LE+L +    +       ++   R     K L +S   
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 207 IRD-GNKLLQSMGSFP--SLNTLHLESNNFTATLTTT--QELHNFTNLEYLTLDDSSLH- 260
           I + G ++L          L  L LES   T+         + +  +L  L L  + L  
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 261 ---ISLLQSIGSIFPSLKNLSMSGCEV--NGVLS-GQGFPHFKSLEHLDMRFARIALNTS 314
                L   +      L+ L +  C +   G     +     +SL+ L +    +     
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL--GDE 299

Query: 315 FLQIIGESM----PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW 370
             +++ E++      L+ L +   +            L     L EL I NN L  +   
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359

Query: 371 CLA-----NTTSLRILDVSFNQLT----GSISSSPLVHLTSIEELRLSNNHF------RI 415
            L        + LR+L ++   ++     S++++ L+   S+ EL LSNN        ++
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT-LLANHSLRELDLSNNCLGDAGILQL 418

Query: 416 PVSLEPLFNHSKLKIFDAKNNEINGE 441
             S+        L+     +   + E
Sbjct: 419 VESVR--QPGCLLEQLVLYDIYWSEE 442

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  101 bits (255), Expect = 9e-23
 Identities = 93/462 (20%), Positives = 159/462 (34%), Gaps = 80/462 (17%)

Query: 2   LDLSGNAFNNNVLSSLAR-LSSLRSLYLSDNRLEGSIDVKELDSL----RDLEELDIGGN 56
           LD+     ++   + L   L   + + L D  L      K++ S       L EL++  N
Sbjct: 8   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELNLRSN 66

Query: 57  KIDKFMV---SKGLS----KLKSLGLSGTGF--KGTFDVRE-FDSFNNLEVLDMSGNEID 106
           ++    V    +GL     K++ L L        G   +     +   L+ L +S N + 
Sbjct: 67  ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126

Query: 107 NLVVPQGLERLSRL-----SKLKKLDLRGNL----CNNSILSSVARLSSLTSLHLSHNIL 157
           +     GL+ L         +L+KL L            + S +        L +S+N +
Sbjct: 127 D----AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 158 QGSIDAKEF-----DSLSNLEELDINDNEIDN---VEVSRGYRGLRKLKSLDLSGVGIRD 209
                 +       DS   LE L +    + +    ++         L+ L L    + D
Sbjct: 183 -NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 210 -GNKLLQSMGSFP--SLNTLHLESNNFTATLTT--TQELHNFTNLEYLTLDDSSLH---- 260
            G   L      P   L TL +     TA       + L    +L+ L+L  + L     
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 261 ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIG 320
             L +++      L++L +  C      +     HF S            L         
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCS----FTAACCSHFSS-----------VL--------- 337

Query: 321 ESMPSLKYLSLSGSTLGTNSSRILDQGLC-PLAHLQELYIDNNDLR----GSLPWCLANT 375
                L  L +S + L     R L QGL  P + L+ L++ + D+      SL   L   
Sbjct: 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397

Query: 376 TSLRILDVSFNQLTGS----ISSSPLVHLTSIEELRLSNNHF 413
            SLR LD+S N L  +    +  S       +E+L L + ++
Sbjct: 398 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 96.2 bits (240), Expect = 7e-21
 Identities = 73/413 (17%), Positives = 138/413 (33%), Gaps = 52/413 (12%)

Query: 94  NLEVLDMSGNEIDNLVVPQGLERLSR-LSKLKKLDLRGN-LCNNS---ILSSVARLSSLT 148
           +++ LD+   E+           L   L + + + L    L       I S++    +L 
Sbjct: 4   DIQSLDIQCEELS----DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 149 SLHLSHNILQGSIDAKEF-----DSLSNLEELDINDNEIDNV---EVSRGYRGLRKLKSL 200
            L+L  N L                   +++L + +  +       +S   R L  L+ L
Sbjct: 60  ELNLRSNELGDV-GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 201 DLSGVGIRD-GNKLLQSMGSFP--SLNTLHLESNNFTATLTTT--QELHNFTNLEYLTLD 255
            LS   + D G +LL      P   L  L LE  + +A         L    + + LT+ 
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

Query: 256 DSSLHISLLQSIGSIFP----SLKNLSMSGCEVN--GVLS-GQGFPHFKSLEHLDMRFAR 308
           ++ ++ + ++ +          L+ L +  C V                SL  L +   +
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 309 IALNTSFLQIIGESM----PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 364
           +      +  +   +      L+ L +    +       L + L     L+EL +  N+L
Sbjct: 239 L--GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296

Query: 365 R--GSLPWCLA---NTTSLRILDVSFNQLTG----SISSSPLVHLTSIEELRLSNNHFR- 414
              G+   C         L  L V     T       SS  L     + EL++SNN    
Sbjct: 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV-LAQNRFLLELQISNNRLED 355

Query: 415 ---IPVSLEPLFNHSKLKIFDAKNNEINGEINE--SHSLTPKFQLKSLSLSSN 462
                +        S L++    + +++       + +L     L+ L LS+N
Sbjct: 356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 85.0 bits (211), Expect = 2e-17
 Identities = 74/464 (15%), Positives = 158/464 (34%), Gaps = 75/464 (16%)

Query: 247 TNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVN--GVLS-GQGFPHFKSLEHLD 303
            +++ L +    L  +    +  +    + + +  C +                +L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 304 MRFARIALNTSFLQIIGESM----PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 359
           +R   +      +  + + +      ++ LSL    L      +L   L  L  LQEL++
Sbjct: 63  LRSNEL--GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 360 DNNDLRGSLPWCLA-----NTTSLRILDVSFNQLT----GSISSSPLVHLTSIEELRLSN 410
            +N L  +    L          L  L + +  L+      ++S  L      +EL +SN
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV-LRAKPDFKELTVSN 179

Query: 411 NHFRIPVSLEPL-----FNHSKLKIFDAKNNEINGEINE--SHSLTPKFQLKSLSLSSNY 463
           N       +  L      +  +L+    ++  +  +        +  K  L+ L+L SN 
Sbjct: 180 NDI-NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 464 -GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL----AGPF 518
            GD                     +  +      LL  +++L  L++    +     G  
Sbjct: 239 LGD-------------------VGMAELCPG---LLHPSSRLRTLWIWECGITAKGCGDL 276

Query: 519 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL----PSLVYFNISMNALDGSIPSSFGNV 574
              + + + L+ L ++ N         + + L      L    +   +   +  S F +V
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336

Query: 575 I----FLQFLDLSNNKLTGE----IPDHLAMCCVNLEFLSLSNNSLK----GHIFSRIFS 622
           +    FL  L +SNN+L       +   L      L  L L++  +       + + + +
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396

Query: 623 LRNLRWLLLEGNHF----VGEIPQSLSKC-SSLKGLYLNNNNLS 661
             +LR L L  N      + ++ +S+ +    L+ L L +   S
Sbjct: 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 81.5 bits (202), Expect = 3e-16
 Identities = 90/528 (17%), Positives = 158/528 (29%), Gaps = 140/528 (26%)

Query: 325 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR----GSLPWCLANTTSLRI 380
            ++ L +    L       L   L      Q + +D+  L       +   L    +L  
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQ---QCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 381 LDVSFNQLTGS----ISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 436
           L++  N+L       +          I++L L N           L              
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT-GAGCGVL-------------- 105

Query: 437 EINGEINESHSLTPKFQLKSLSLSSNY-GDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 495
                   S +L     L+ L LS N  GD+                    ++++ E   
Sbjct: 106 --------SSTLRTLPTLQELHLSDNLLGDAG-------------------LQLLCEG-- 136

Query: 496 WLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILP 551
            LL+   +LE L L   SL      P    + +    + L VSNN+        +   L 
Sbjct: 137 -LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK 195

Query: 552 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLA---MCCVNLEFLSLS 608
                                +   L+ L L +  +T +    L        +L  L+L 
Sbjct: 196 D--------------------SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235

Query: 609 NNSLKGHIFSRI-----FSLRNLRWLLLEGNHF----VGEIPQSLSKCSSLKGLYLNNNN 659
           +N L     + +          LR L +          G++ + L    SLK L L  N 
Sbjct: 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295

Query: 660 LSGKIPRWLGNLKGLQHI--VMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY 717
           L           +G + +   + +                L+ L +   + +    +C  
Sbjct: 296 LGD---------EGARLLCETLLEPGC------------QLESLWVKSCSFT---AACCS 331

Query: 718 PLS--------IKQVHLSKNMLHG----QLKEGTFFNCSSLVTLDLSYNYLN----GSIP 761
             S        + ++ +S N L      +L +G     S L  L L+   ++     S+ 
Sbjct: 332 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391

Query: 762 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRL-----NQLQLLDLSDNNL 804
             +     L  L+L++N L     +QL          L+ L L D   
Sbjct: 392 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 76.9 bits (190), Expect = 1e-14
 Identities = 76/460 (16%), Positives = 137/460 (29%), Gaps = 110/460 (23%)

Query: 528 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALD----GSIPSSFGNVIFLQFLDLS 583
           ++ LD+           E+  +L       +    L       I S+      L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 584 NNKLTGE----IPDHLAMCCVNLEFLSLSNNSLK----GHIFSRIFSLRNLRWLLLEGNH 635
           +N+L       +   L      ++ LSL N  L     G + S + +L  L+ L L  N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 636 FVGEIPQSLSK-----CSSLKGLYLNNNNLSGKIPRWLGN-LKGLQHIVMPKNHLEGPIP 689
                 Q L +        L+ L L   +LS      L + L+                 
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD------------- 171

Query: 690 VEFCRLDSLQILDISDNNISGS--------LPSCFYPLSIKQVHLSKNMLHGQ----LKE 737
                    + L +S+N+I+ +        L     P  ++ + L    +       L  
Sbjct: 172 --------FKELTVSNNDINEAGVRVLCQGLKDS--PCQLEALKLESCGVTSDNCRDLCG 221

Query: 738 GTFFNCSSLVTLDLSYNYLNGS-----IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL- 791
               + +SL  L L  N L         P  +   S+L  L +    +  +    LCR+ 
Sbjct: 222 I-VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280

Query: 792 ---NQLQLLDLSDNNLH---------GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISG 839
                L+ L L+ N L           L+       +L     +                
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS---------------- 324

Query: 840 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIG-----NLTR 894
                             + +          L  L +S N+L      ++        + 
Sbjct: 325 -----------FTAACCSHFSSVLA--QNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371

Query: 895 IQTLNLSHNNLT----GTIPLTFSNLRHIESLDLSYNKLS 930
           ++ L L+  +++     ++  T      +  LDLS N L 
Sbjct: 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.8 bits (156), Expect = 1e-10
 Identities = 59/374 (15%), Positives = 123/374 (32%), Gaps = 67/374 (17%)

Query: 601 NLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHF----VGEIPQSLSKCSSLKGLYL 655
           +++ L +    L    ++ +   L+  + + L+          +I  +L    +L  L L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 656 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS----GS 711
            +N L            G+  ++     L+ P          +Q L + +  ++    G 
Sbjct: 64  RSNELGDV---------GVHCVL---QGLQTPSC-------KIQKLSLQNCCLTGAGCGV 104

Query: 712 LPSCFYPL-SIKQVHLSKNMLHGQ----LKEGTFFNCSSLVTLDLSYNYLN----GSIPD 762
           L S    L +++++HLS N+L       L EG       L  L L Y  L+      +  
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164

Query: 763 WIDGLSQLSHLNLAHNNLEGEVPIQLCRL-----NQLQLLDLSDNNLHG--------LIP 809
            +        L +++N++       LC+       QL+ L L    +          ++ 
Sbjct: 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 810 SCFDNTTLHESYNNNSSPDKPFKT-SFSISGPQGSVEKKILEIFEFTT---KNIAYAYQG 865
           S      L    N     D         +  P   +    +     T     ++    + 
Sbjct: 225 SKASLRELALGSNKLG--DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR- 281

Query: 866 RVLSLLAGLDLSCNKL----VGHIPPQIGN-LTRIQTLNLSHNNLT--GTIPLT--FSNL 916
                L  L L+ N+L       +   +     ++++L +   + T       +   +  
Sbjct: 282 -AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340

Query: 917 RHIESLDLSYNKLS 930
           R +  L +S N+L 
Sbjct: 341 RFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 48/206 (23%)

Query: 2   LDLSGNAFNNNVLSSLARL----SSLRSLYLSDNRLEGSIDVKEL-DSLRD----LEELD 52
           L +            L R+     SL+ L L+ N L G    + L ++L +    LE L 
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL-GDEGARLLCETLLEPGCQLESLW 319

Query: 53  IGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQ 112
           +          +   S   S  L+                  L  L +S N +++     
Sbjct: 320 VKSCSFT----AACCSHF-SSVLA--------------QNRFLLELQISNNRLED----A 356

Query: 113 GLERLSRL-----SKLKKLDLRGNL----CNNSILSSVARLSSLTSLHLSHNILQGSIDA 163
           G+  L +      S L+ L L          +S+ +++    SL  L LS+N L G    
Sbjct: 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL-GDAGI 415

Query: 164 KEF-----DSLSNLEELDINDNEIDN 184
            +           LE+L + D     
Sbjct: 416 LQLVESVRQPGCLLEQLVLYDIYWSE 441

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  102 bits (255), Expect = 1e-23
 Identities = 52/245 (21%), Positives = 99/245 (40%), Gaps = 28/245 (11%)

Query: 12  NVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLK 71
           NV+     L++   +    + +    D      L  +  L   G  +      + L+ L 
Sbjct: 10  NVIFPDPALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLI 66

Query: 72  SLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN 131
            L L         D+    +   +  L++SGN + N      +  ++ L  +K LDL   
Sbjct: 67  GLELKDNQIT---DLAPLKNLTKITELELSGNPLKN------VSAIAGLQSIKTLDLTST 117

Query: 132 LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY 191
               + ++ +A LS+L  L+L  N +    +      L+NL+ L I + ++ ++      
Sbjct: 118 --QITDVTPLAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVSDLT---PL 169

Query: 192 RGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEY 251
             L KL +L      I D    +  + S P+L  +HL++N     ++    L N +NL  
Sbjct: 170 ANLSKLTTLKADDNKISD----ISPLASLPNLIEVHLKNNQ----ISDVSPLANTSNLFI 221

Query: 252 LTLDD 256
           +TL +
Sbjct: 222 VTLTN 226

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  100 bits (250), Expect = 5e-23
 Identities = 48/233 (20%), Positives = 95/233 (40%), Gaps = 26/233 (11%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           +    +   +    + A L  + +L      +     ++ +  L +L  L++  N+I   
Sbjct: 24  IAAGKSNVTD--TVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKDNQITDL 78

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
              K L+K+  L LSG   K   +V       +++ LD++  +I +      +  L+ LS
Sbjct: 79  APLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITD------VTPLAGLS 129

Query: 122 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNE 181
            L+ L L  N    + +S +A L++L  L + +  +    D     +LS L  L  +DN+
Sbjct: 130 NLQVLYLDLN--QITNISPLAGLTNLQYLSIGNAQVS---DLTPLANLSKLTTLKADDNK 184

Query: 182 IDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT 234
           I ++        L  L  + L    I D    +  + +  +L  + L +   T
Sbjct: 185 ISDIS---PLASLPNLIEVHLKNNQISD----VSPLANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 97.5 bits (243), Expect = 4e-22
 Identities = 53/247 (21%), Positives = 105/247 (42%), Gaps = 28/247 (11%)

Query: 38  DVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEV 97
            +    +L +  ++  G + +   +    L  + +L   GTG      +      NNL  
Sbjct: 11  VIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIG 67

Query: 98  LDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNIL 157
           L++  N+I +      L  L  L+K+ +L+L GN      +S++A L S+ +L L+   +
Sbjct: 68  LELKDNQITD------LAPLKNLTKITELELSGN--PLKNVSAIAGLQSIKTLDLTSTQI 119

Query: 158 QGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSM 217
               D      LSNL+ L ++ N+I N+       GL  L+ L +    + D    L  +
Sbjct: 120 T---DVTPLAGLSNLQVLYLDLNQITNIS---PLAGLTNLQYLSIGNAQVSD----LTPL 169

Query: 218 GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 277
            +   L TL  + N     ++    L +  NL  + L ++   IS +  + +   +L  +
Sbjct: 170 ANLSKLTTLKADDNK----ISDISPLASLPNLIEVHLKNN--QISDVSPLAN-TSNLFIV 222

Query: 278 SMSGCEV 284
           +++   +
Sbjct: 223 TLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 92.1 bits (229), Expect = 2e-20
 Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 19/203 (9%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L+L  N   +  L+ L  L+ +  L LS N L+   +V  +  L+ ++ LD+   +I   
Sbjct: 68  LELKDNQITD--LAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITDV 122

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
               GLS L+ L L         ++       NL+ L +   ++ +      L  L+ LS
Sbjct: 123 TPLAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVSD------LTPLANLS 173

Query: 122 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNE 181
           KL  L    N    S +S +A L +L  +HL +N +    D     + SNL  + + +  
Sbjct: 174 KLTTLKADDN--KISDISPLASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQT 228

Query: 182 IDNVEVSRGYRGLRKLKSLDLSG 204
           I N  V      +        SG
Sbjct: 229 ITNQPVFYNNNLVVPNVVKGPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 54/272 (19%), Positives = 97/272 (35%), Gaps = 58/272 (21%)

Query: 167 DSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTL 226
            +L+N  ++    + + +         L  + +L   G G+      ++ +    +L  L
Sbjct: 16  PALANAIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGVTT----IEGVQYLNNLIGL 68

Query: 227 HLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNG 286
            L+ N     +T    L N T +  L L  +   +  + +I     S+K L ++  ++  
Sbjct: 69  ELKDNQ----ITDLAPLKNLTKITELELSGN--PLKNVSAIAG-LQSIKTLDLTSTQITD 121

Query: 287 VLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQ 346
           V          +L+ L +   +I            ++  L  L+                
Sbjct: 122 V---TPLAGLSNLQVLYLDLNQI-----------TNISPLAGLT---------------- 151

Query: 347 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 406
                 +LQ L I N  +    P  LAN + L  L    N+++     SPL  L ++ E+
Sbjct: 152 ------NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS---DISPLASLPNLIEV 200

Query: 407 RLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI 438
            L NN       + PL N S L I    N  I
Sbjct: 201 HLKNNQIS---DVSPLANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 78.6 bits (194), Expect = 9e-16
 Identities = 50/290 (17%), Positives = 99/290 (34%), Gaps = 44/290 (15%)

Query: 550 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 609
           L + +      + +      +  ++  +  L      +T  I         NL  L L +
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEGV--QYLNNLIGLELKD 72

Query: 610 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 669
           N +     + + +L  +  L L GN    +   +++   S+K L L +  ++   P  L 
Sbjct: 73  NQITD--LAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 670 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 729
            L  LQ + +  N +    P     L +LQ L I +  +S  L                 
Sbjct: 127 GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTP--------------- 168

Query: 730 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 789
                       N S L TL    N ++  I   +  L  L  ++L +N +    P+   
Sbjct: 169 ----------LANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSPLA-- 214

Query: 790 RLNQLQLLDLSDNNLHGLIPSCFDN-TTLHESYNNNSSPDKPFKTSFSIS 838
             + L ++ L++  +        +N    +     + +P  P   S + +
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGT 264

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 45/283 (15%), Positives = 99/283 (34%), Gaps = 30/283 (10%)

Query: 307 ARIALNTSFLQIIG-ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR 365
             I   T+   I    ++ +   ++   S +    +         L  +  L      + 
Sbjct: 1   GSITQPTAINVIFPDPALANAIKIAAGKSNVTDTVT------QADLDGITTLSAFGTGVT 54

Query: 366 GSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNH 425
            ++   +    +L  L++  NQ+T     +PL +LT I EL LS N  +   ++  +   
Sbjct: 55  -TIE-GVQYLNNLIGLELKDNQIT---DLAPLKNLTKITELELSGNPLK---NVSAIAGL 106

Query: 426 SKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELS 485
             +K  D  + +I  ++     L+    L+ L L  N    +T    L     L+   + 
Sbjct: 107 QSIKTLDLTSTQIT-DVTPLAGLS---NLQVLYLDLN---QITNISPLAGLTNLQYLSIG 159

Query: 486 HIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE 545
           + + + +     L N +KL  L   ++ ++     P+ S   L  + + NN      P+ 
Sbjct: 160 NAQ-VSDLTP--LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVSPLA 214

Query: 546 IGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 588
                 +L    ++   +         N++    +   +    
Sbjct: 215 ---NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 48/265 (18%), Positives = 99/265 (37%), Gaps = 30/265 (11%)

Query: 498 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI-----LPS 552
             +   +  L      +       +     L  L++ +N         I D+     L  
Sbjct: 37  QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ--------ITDLAPLKNLTK 86

Query: 553 LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL 612
           +    +S N L     S+   +  ++ LDL++ ++T   P        NL+ L L  N +
Sbjct: 87  ITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTPLA---GLSNLQVLYLDLNQI 141

Query: 613 KGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK 672
                S +  L NL++L +         P  L+  S L  L  ++N +S   P  L +L 
Sbjct: 142 TN--ISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLP 195

Query: 673 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH 732
            L  + +  N +    P+      +L I+ +++  I  +    FY  ++   ++ K    
Sbjct: 196 NLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTI--TNQPVFYNNNLVVPNVVKGPSG 251

Query: 733 GQLKEGTFFNCSSLVTLDLSYNYLN 757
             +   T  +  +  + +L++N  +
Sbjct: 252 APIAPATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.9 bits (156), Expect = 6e-11
 Identities = 48/279 (17%), Positives = 95/279 (34%), Gaps = 53/279 (18%)

Query: 668 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 727
              L     I   K+++   +      LD +  L      ++ ++    Y  ++  + L 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELK 71

Query: 728 KNMLHGQLKEGTFF-NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPI 786
            N    Q+ +     N + +  L+LS N L       I GL  +  L+L    +    P 
Sbjct: 72  DN----QITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP- 124

Query: 787 QLCRLNQLQLLDLSDNNLHGLIP-SCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSV 844
            L  L+ LQ+L L  N +  + P +   N   L                           
Sbjct: 125 -LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA---------------------- 161

Query: 845 EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNN 904
             ++ ++                LS L  L    NK+   I P + +L  +  ++L +N 
Sbjct: 162 --QVSDLTPLAN-----------LSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQ 206

Query: 905 LTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 943
           ++   PL  +N  ++  + L+   ++ +      +L   
Sbjct: 207 ISDVSPL--ANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 56/278 (20%), Positives = 95/278 (34%), Gaps = 57/278 (20%)

Query: 644 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 703
               ++   +    +N++  +     +L G+  +      +     V++  L++L  L++
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQY--LNNLIGLEL 70

Query: 704 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKE-GTFFNCSSLVTLDLSYNYLNGSIPD 762
            DN I+  L        I ++ LS N     LK         S+ TLDL+   +    P 
Sbjct: 71  KDNQIT-DLAPLKNLTKITELELSGN----PLKNVSAIAGLQSIKTLDLTSTQITDVTP- 124

Query: 763 WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLH 818
            + GLS L  L L  N +    P  L  L  LQ L + +  +  L P    N    TTL 
Sbjct: 125 -LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179

Query: 819 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 878
              N  S           IS                             L  L  + L  
Sbjct: 180 ADDNKIS----------DISPLAS-------------------------LPNLIEVHLKN 204

Query: 879 NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 916
           N++    P  + N + +  + L++  +T       +NL
Sbjct: 205 NQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNL 240

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 41/262 (15%), Positives = 97/262 (37%), Gaps = 51/262 (19%)

Query: 695 LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 754
           L +   +    +N++ ++        I  +      +   ++       ++L+ L+L  N
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLD-GITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDN 73

Query: 755 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP-SCFD 813
            +   +   +  L++++ L L+ N L+      +  L  ++ LDL+   +  + P +   
Sbjct: 74  QIT-DLAP-LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPLAGLS 129

Query: 814 N-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 872
           N   L+   N                        +I  I                L+ L 
Sbjct: 130 NLQVLYLDLN------------------------QITNISPLAG-----------LTNLQ 154

Query: 873 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 932
            L +   ++   + P + NL+++ TL    N ++   PL  ++L ++  + L  N++S  
Sbjct: 155 YLSIGNAQVS-DLTP-LANLSKLTTLKADDNKISDISPL--ASLPNLIEVHLKNNQISDV 210

Query: 933 IPRQLVDLNTLAIFIVAYNNLS 954
            P  L + + L I  +    ++
Sbjct: 211 SP--LANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 46/215 (21%), Positives = 83/215 (38%), Gaps = 25/215 (11%)

Query: 742 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 801
             ++ + +    + +  ++      L  ++ L+     +     +Q   LN L  L+L D
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKD 72

Query: 802 NNLHGLIP-SCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNI 859
           N +  L P       T L  S N   +          +S   G    K L++      ++
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKN----------VSAIAGLQSIKTLDLTSTQITDV 122

Query: 860 AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 919
                   LS L  L L  N++  +I P +  LT +Q L++ +  ++   PL  +NL  +
Sbjct: 123 TPLAG---LSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTPL--ANLSKL 175

Query: 920 ESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 954
            +L    NK+S  I   L  L  L    +  N +S
Sbjct: 176 TTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQIS 208

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.9 bits (247), Expect = 7e-23
 Identities = 58/233 (24%), Positives = 84/233 (36%), Gaps = 32/233 (13%)

Query: 577 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 635
            Q + L  N+++  +P      C NL  L L +N L   I +  F+ L  L  L L  N 
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91

Query: 636 FVGEIPQS-LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FC 693
            +  +  +       L  L+L+   L    P     L  LQ++ +  N L+  +P + F 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFR 150

Query: 694 RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 753
            L +L  L +  N IS                         + E  F    SL  L L  
Sbjct: 151 DLGNLTHLFLHGNRIS------------------------SVPERAFRGLHSLDRLLLHQ 186

Query: 754 NYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 805
           N +   +       L +L  L L  NNL       L  L  LQ L L+DN   
Sbjct: 187 NRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.9 bits (247), Expect = 9e-23
 Identities = 54/211 (25%), Positives = 79/211 (37%), Gaps = 21/211 (9%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           + L GN  ++   +S     +L  L+L  N L   ID      L  LE+LD+  N   + 
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 62  MVS---KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLS 118
           +      GL +L +L L   G +       F     L+ L +  N +  L  P       
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQAL--PDDT--FR 150

Query: 119 RLSKLKKLDLRGNLCNNSILSSV-----ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLE 173
            L  L  L L GN      +SSV       L SL  L L  N +   +    F  L  L 
Sbjct: 151 DLGNLTHLFLHGNR-----ISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLM 204

Query: 174 ELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 204
            L +  N +  +  +     LR L+ L L+ 
Sbjct: 205 TLYLFANNLSALP-TEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 97.8 bits (244), Expect = 2e-22
 Identities = 53/260 (20%), Positives = 84/260 (32%), Gaps = 34/260 (13%)

Query: 524 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 583
            ++            Q  +P     I  +     +  N +     +SF     L  L L 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVP---VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 584 NNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQ 642
           +N L   I          LE L LS+N+    +    F  L  L  L L+      E+  
Sbjct: 65  SNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGP 122

Query: 643 -SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL 701
                 ++L+ LYL +N L         +L  L H+ +  N +       F  L SL  L
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 702 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 761
            +  N ++                         +    F +   L+TL L  N L+ ++P
Sbjct: 183 LLHQNRVA------------------------HVHPHAFRDLGRLMTLYLFANNLS-ALP 217

Query: 762 DWI-DGLSQLSHLNLAHNNL 780
                 L  L +L L  N  
Sbjct: 218 TEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 95.1 bits (237), Expect = 2e-21
 Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 29/224 (12%)

Query: 21  SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSGT 78
           ++ + ++L  NR+   +      + R+L  L +  N + +   +   GL+ L+ L LS  
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 79  GFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSIL 138
               + D   F     L  L +    +  L    GL     L+ L+ L L+ N      L
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQEL--GPGL--FRGLAALQYLYLQDNA-----L 141

Query: 139 SSV-----ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRG 193
            ++       L +LT L L  N +  S+  + F  L +L+ L ++ N + +V     +R 
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVH-PHAFRD 199

Query: 194 LRKLKSLDLSGVGIRDGNKL----LQSMGSFPSLNTLHLESNNF 233
           L +L +L L        N L     +++    +L  L L  N +
Sbjct: 200 LGRLMTLYLF------ANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.1 bits (232), Expect = 6e-21
 Identities = 45/194 (23%), Positives = 70/194 (36%), Gaps = 5/194 (2%)

Query: 624 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 683
              + + L GN        S   C +L  L+L++N L+         L  L+ + +  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 684 LEGPIPVE-FCRLDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTF 740
               +    F  L  L  L +    +   L    F  L +++ ++L  N L   L + TF
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTF 149

Query: 741 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 800
            +  +L  L L  N ++        GL  L  L L  N +    P     L +L  L L 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 801 DNNLHGLIPSCFDN 814
            NNL  L       
Sbjct: 210 ANNLSALPTEALAP 223

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.4 bits (225), Expect = 5e-20
 Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 11/192 (5%)

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 698
            +P  +   ++ + ++L+ N +S          + L  + +  N L       F  L  L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 699 QILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 756
           + LD+SDN    S+    F+ L  +  +HL +  L  +L  G F   ++L  L L  N L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 757 NGSIPD-WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN- 814
             ++PD     L  L+HL L  N +          L+ L  L L  N +  + P  F + 
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 815 ---TTLHESYNN 823
               TL+   NN
Sbjct: 201 GRLMTLYLFANN 212

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 46/186 (24%), Positives = 72/186 (38%), Gaps = 18/186 (9%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L L  N       ++   L+ L  L LSDN    S+D      L  L  L +    + + 
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120

Query: 62  --MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSR 119
              + +GL+ L+ L L     +       F    NL  L + GN I ++  P+       
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSV--PERA--FRG 175

Query: 120 LSKLKKLDLRGNLCNNSILSSVAR-----LSSLTSLHLSHNILQGSIDAKEFDSLSNLEE 174
           L  L +L L  N      ++ V       L  L +L+L  N L  ++  +    L  L+ 
Sbjct: 176 LHSLDRLLLHQNR-----VAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQY 229

Query: 175 LDINDN 180
           L +NDN
Sbjct: 230 LRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.3 bits (204), Expect = 3e-17
 Identities = 57/292 (19%), Positives = 89/292 (30%), Gaps = 65/292 (22%)

Query: 693 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 752
           C  +           +  ++P    P + +++ L  N +   +   +F  C +L  L L 
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPVGI-PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLH 64

Query: 753 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGLIPSC 811
            N L         GL+ L  L+L+ N     V       L +L  L L    L  L P  
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 812 FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 871
           F                                                       L+ L
Sbjct: 125 FRG-----------------------------------------------------LAAL 131

Query: 872 AGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 930
             L L  N L   +P     +L  +  L L  N ++      F  L  ++ L L  N+++
Sbjct: 132 QYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 931 GKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY---DGNPFLC 979
              P    DL  L    +  NNLS  +P      A      Y   + NP++C
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLS-ALPT--EALAPLRALQYLRLNDNPWVC 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 53/290 (18%), Positives = 102/290 (35%), Gaps = 77/290 (26%)

Query: 133 CNNSILSSVAR--LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 190
           C    L +V     ++   + L  N +   + A  F +  NL  L ++ N +  ++ +  
Sbjct: 18  CPQQGLQAVPVGIPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARID-AAA 75

Query: 191 YRGLRKLKSLDLSGVGIRDGNKLLQSM--GSF---PSLNTLHLESNNFTATLTTTQELHN 245
           + GL  L+ LDLS       N  L+S+   +F     L+TLHL+                
Sbjct: 76  FTGLALLEQLDLSD------NAQLRSVDPATFHGLGRLHTLHLDRCGLQE---------- 119

Query: 246 FTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMR 305
                                                     L    F    +L++L ++
Sbjct: 120 ------------------------------------------LGPGLFRGLAALQYLYLQ 137

Query: 306 FARI-ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 364
              + AL     +     + +L +L L G+ +    S + ++    L  L  L +  N +
Sbjct: 138 DNALQALPDDTFR----DLGNLTHLFLHGNRI----SSVPERAFRGLHSLDRLLLHQNRV 189

Query: 365 RGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 414
               P    +   L  L +  N L+ ++ +  L  L +++ LRL++N + 
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.8 bits (187), Expect = 6e-15
 Identities = 42/223 (18%), Positives = 76/223 (34%), Gaps = 29/223 (13%)

Query: 92  FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-----ARLSS 146
               + + + GN I ++  P           L  L L  N+     L+ +       L+ 
Sbjct: 31  PAASQRIFLHGNRISHV--PAAS--FRACRNLTILWLHSNV-----LARIDAAAFTGLAL 81

Query: 147 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 206
           L  L LS N    S+D   F  L  L  L ++   +  +     +RGL  L+ L L    
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQ--- 137

Query: 207 IRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHIS 262
               N L      +F    +L  L L  N  ++            +L+ L L  + +   
Sbjct: 138 ---DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA--FRGLHSLDRLLLHQNRVA-H 191

Query: 263 LLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMR 305
           +          L  L +    ++  L  +     ++L++L + 
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.3 bits (170), Expect = 7e-13
 Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 17/164 (10%)

Query: 2   LDLSGNAFNNNVLSSL-----ARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGN 56
           LDLS    +N  L S+       L  L +L+L    L+  +       L  L+ L +  N
Sbjct: 85  LDLS----DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDN 139

Query: 57  KIDKF--MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGL 114
            +        + L  L  L L G     +   R F   ++L+ L +  N + ++      
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHV--HPHA 196

Query: 115 ERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQ 158
                L +L  L L  N  +     ++A L +L  L L+ N   
Sbjct: 197 --FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 52/284 (18%), Positives = 89/284 (31%), Gaps = 81/284 (28%)

Query: 352 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 411
           A  Q +++  N +            +L IL +  N L   I ++    L  +E+L LS+N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90

Query: 412 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 471
             ++  S++P         F              H L    +L +L L            
Sbjct: 91  A-QL-RSVDP-------ATF--------------HGLG---RLHTLHLDRC--------- 115

Query: 472 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFL 531
                       L  +         L      L++LYL                      
Sbjct: 116 -----------GLQEL------GPGLFRGLAALQYLYL---------------------- 136

Query: 532 DVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI 591
              +N  Q  +P +    L +L +  +  N +      +F  +  L  L L  N++   +
Sbjct: 137 --QDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HV 192

Query: 592 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGN 634
             H       L  L L  N+L   + +     LR L++L L  N
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 45/248 (18%), Positives = 77/248 (31%), Gaps = 48/248 (19%)

Query: 324 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 383
            + + + L G+ +    S +         +L  L++ +N L             L  LD+
Sbjct: 32  AASQRIFLHGNRI----SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 384 SFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP-LFNH-SKLKIFDAKNNEINGE 441
           S N    S+  +    L  +  L L     +    L P LF   + L+    ++N +   
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQYLYLQDNALQ-A 143

Query: 442 INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN 501
           +    +      L  L L  N                     +S +      P       
Sbjct: 144 L-PDDTFRDLGNLTHLFLHGN--------------------RISSV------PERAFRGL 176

Query: 502 TKLEFLYLVNDSL----AGPFR-LPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 556
             L+ L L  + +       FR L      RL  L +  NN    +P E    L +L Y 
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLG-----RLMTLYLFANNLS-ALPTEALAPLRALQYL 230

Query: 557 NISMNALD 564
            ++ N   
Sbjct: 231 RLNDNPWV 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 96.7 bits (241), Expect = 5e-22
 Identities = 55/248 (22%), Positives = 94/248 (37%), Gaps = 26/248 (10%)

Query: 12  NVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLK 71
             + S    +      L    +    D    + L  ++++    + I      + L  + 
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVT 71

Query: 72  SLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN 131
            L L+G       D++   +  NL  L +  N++ +      L  L  L KLK L L  N
Sbjct: 72  KLFLNGNKLT---DIKPLANLKNLGWLFLDENKVKD------LSSLKDLKKLKSLSLEHN 122

Query: 132 LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY 191
               S ++ +  L  L SL+L +N +    D      L+ L+ L + DN+I ++      
Sbjct: 123 --GISDINGLVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIV---PL 174

Query: 192 RGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEY 251
            GL KL++L LS   I D    L+++    +L+ L L S              N      
Sbjct: 175 AGLTKLQNLYLSKNHISD----LRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPNT 228

Query: 252 LTLDDSSL 259
           +   D SL
Sbjct: 229 VKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 93.2 bits (232), Expect = 8e-21
 Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 21/202 (10%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           +  + +   +  +  +  L ++  L+L+ N+L    D+K L +L++L  L +  NK+   
Sbjct: 51  IIANNSDIKS--VQGIQYLPNVTKLFLNGNKLT---DIKPLANLKNLGWLFLDENKVKDL 105

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
              K L KLKSL L   G     D+        LE L +  N+I +      +  LSRL+
Sbjct: 106 SSLKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKITD------ITVLSRLT 156

Query: 122 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNE 181
           KL  L L  N    S +  +A L+ L +L+LS N +    D +    L NL+ L++   E
Sbjct: 157 KLDTLSLEDN--QISDIVPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQE 211

Query: 182 IDNVEVSR--GYRGLRKLKSLD 201
             N  ++          +K+ D
Sbjct: 212 CLNKPINHQSNLVVPNTVKNTD 233

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 46/179 (25%), Positives = 72/179 (40%), Gaps = 17/179 (9%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L L  N   +  LSSL  L  L+SL L  N +    D+  L  L  LE L +G NKI   
Sbjct: 95  LFLDENKVKD--LSSLKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDI 149

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
            V   L+KL +L L         D+        L+ L +S N I +      L  L+ L 
Sbjct: 150 TVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSKNHISD------LRALAGLK 200

Query: 122 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 180
            L  L+L    C N  ++  + L    ++  +   L   +  +      + E+ ++  +
Sbjct: 201 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL---VTPEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 49/255 (19%), Positives = 90/255 (35%), Gaps = 41/255 (16%)

Query: 550 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 609
               +  N+   ++      +   +  +  +  +N+ +   +   +     N+  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNG 77

Query: 610 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 669
           N L       + +L+NL WL L+ N  V ++  SL     LK L L +N +S  I   L 
Sbjct: 78  NKLTD--IKPLANLKNLGWLFLDENK-VKDL-SSLKDLKKLKSLSLEHNGIS-DIN-GLV 131

Query: 670 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 729
           +L  L+ + +  N +     +   RL  L  L + DN IS  +                 
Sbjct: 132 HLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVP--------------- 173

Query: 730 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 789
                         + L  L LS N+++  +   + GL  L  L L       +      
Sbjct: 174 ----------LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQS 221

Query: 790 RLNQLQLLDLSDNNL 804
            L     +  +D +L
Sbjct: 222 NLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 55/268 (20%), Positives = 104/268 (38%), Gaps = 36/268 (13%)

Query: 219 SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 278
           +F      +L+  +    +T     +   +++ +  ++S   I  +Q I    P++  L 
Sbjct: 22  AFAETIKDNLKKKS----VTDAVTQNELNSIDQIIANNS--DIKSVQGIQY-LPNVTKLF 74

Query: 279 MSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGT 338
           ++G   N +   +   + K+L  L +   ++  + S L    + +  LK LSL  +    
Sbjct: 75  LNG---NKLTDIKPLANLKNLGWLFLDENKVK-DLSSL----KDLKKLKSLSLEHN---- 122

Query: 339 NSSRILD-QGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL 397
               I D  GL  L  L+ LY+ NN +       L+  T L  L +  NQ++      PL
Sbjct: 123 ---GISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS---DIVPL 174

Query: 398 VHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL 457
             LT ++ L LS NH      L  L     L + +  + E   +     S      L   
Sbjct: 175 AGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSN-----LVVP 226

Query: 458 SLSSNYGDSVTFPKFLYHQHELKEAELS 485
           +   N   S+  P+ +    + ++  + 
Sbjct: 227 NTVKNTDGSLVTPEIISDDGDYEKPNVK 254

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 9e-09
 Identities = 48/307 (15%), Positives = 92/307 (29%), Gaps = 55/307 (17%)

Query: 653 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL 712
                  +                  + K  +   +      L+S+  +  ++++I  S+
Sbjct: 7   TITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV 61

Query: 713 PSCFYPLSIKQVHLSKNMLHGQLKEGTFF-NCSSLVTLDLSYNYLNGSIPDWIDGLSQLS 771
               Y  ++ ++ L+ N    +L +     N  +L  L L  N +   +   +  L +L 
Sbjct: 62  QGIQYLPNVTKLFLNGN----KLTDIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLK 115

Query: 772 HLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP-SCFDN-TTLHESYNNNSSPDK 829
            L+L HN +     +    L QL+ L L +N +  +   S      TL    N       
Sbjct: 116 SLSLEHNGISDINGLV--HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN------- 166

Query: 830 PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 889
                            +I +I                L+ L  L LS N +   +   +
Sbjct: 167 -----------------QISDIVPLAG-----------LTKLQNLYLSKNHIS-DLRA-L 196

Query: 890 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 949
             L  +  L L             SNL    ++  +   L    P  + D        V 
Sbjct: 197 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVK 254

Query: 950 YNNLSGK 956
           ++     
Sbjct: 255 WHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 46/263 (17%), Positives = 92/263 (34%), Gaps = 34/263 (12%)

Query: 453 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND 512
           +    +L      SVT        + + +   ++   I       ++    +  L+L  +
Sbjct: 25  ETIKDNLKKK---SVTDAVTQNELNSIDQIIANN-SDIKSVQG--IQYLPNVTKLFLNGN 78

Query: 513 SLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI-----LPSLVYFNISMNALDGSI 567
            L      P+ + K L +L +  N         + D+     L  L   ++  N +  S 
Sbjct: 79  KLTDIK--PLANLKNLGWLFLDENK--------VKDLSSLKDLKKLKSLSLEHNGI--SD 126

Query: 568 PSSFGNVIFLQFLDLSNNKLTG-EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNL 626
            +   ++  L+ L L NNK+T   +   L      L+ LSL +N +       +  L  L
Sbjct: 127 INGLVHLPQLESLYLGNNKITDITVLSRL----TKLDTLSLEDNQISD--IVPLAGLTKL 180

Query: 627 RWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG 686
           + L L  NH + ++ ++L+   +L  L L +     K      NL     +      L  
Sbjct: 181 QNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

Query: 687 PIPVEFCRLDSLQILDISDNNIS 709
           P  +        +  ++  +   
Sbjct: 239 PEIISD--DGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 44/290 (15%), Positives = 94/290 (32%), Gaps = 49/290 (16%)

Query: 644 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 703
               +      L   +++  +      L  +  I+   + ++    +++  L ++  L +
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQY--LPNVTKLFL 75

Query: 704 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 763
           + N ++  +       ++  + L +N +       +  +   L +L L +N ++  I   
Sbjct: 76  NGNKLT-DIKPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGIS-DING- 129

Query: 764 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESY-N 822
           +  L QL  L L +N +       L RL +L  L L DN +   I      T L   Y +
Sbjct: 130 LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD-IVPLAGLTKLQNLYLS 186

Query: 823 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV 882
            N                       I ++                L  L  L+L   + +
Sbjct: 187 KN----------------------HISDLRALAG-----------LKNLDVLELFSQECL 213

Query: 883 GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 932
                   NL    T+  +  +L    P   S+    E  ++ ++     
Sbjct: 214 NKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPEFT 261

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.9 bits (246), Expect = 2e-21
 Identities = 53/332 (15%), Positives = 99/332 (29%), Gaps = 73/332 (21%)

Query: 497 LLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 556
             +   K        +       L      +   L ++  N    +P  +    P +   
Sbjct: 32  AWDKWEKQALPGENRNEA--VSLLKECLINQFSELQLNRLNLS-SLPDNLP---PQITVL 85

Query: 557 NISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI 616
            I+ NAL  S+P    +   L++LD  +N+L+  +P+  A    +L+ L + NN L   +
Sbjct: 86  EITQNALI-SLPELPAS---LEYLDACDNRLS-TLPELPA----SLKHLDVDNNQLT--M 134

Query: 617 FSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 676
                    L ++  + N     +P+  +   SL+ L + NN L+  +P    +L     
Sbjct: 135 LPE--LPALLEYINADNNQLT-MLPELPT---SLEVLSVRNNQLT-FLPELPESL----- 182

Query: 677 IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLK 736
                                 + LD+S N +  SLP+                     +
Sbjct: 183 ----------------------EALDVSTNLLE-SLPAVPVRNH-------------HSE 206

Query: 737 EGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQL 796
           E       + +      N +   IP+ I  L     + L  N L   +   L +      
Sbjct: 207 E-------TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258

Query: 797 LDLSDNNLHGLIPSCFDNTTLHESYNNNSSPD 828
                                         P+
Sbjct: 259 YHGPRIYFSMSDGQQNTLHRPLADAVTAWFPE 290

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 91.2 bits (226), Expect = 5e-19
 Identities = 58/367 (15%), Positives = 98/367 (26%), Gaps = 103/367 (28%)

Query: 566 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRI--FSL 623
           SI     N   L   +   N ++              E  +L   + +    S +    +
Sbjct: 2   SIMLPINNNFSLS-QNSFYNTIS-GTYADYFSAWDKWEKQALPGEN-RNEAVSLLKECLI 58

Query: 624 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 683
                L L   +    +P +L     +  L +  N L   +P    +L+ L       N 
Sbjct: 59  NQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPASLEYLD---ACDNR 111

Query: 684 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC 743
           L   +P       SL+ LD+ +N ++  LP                              
Sbjct: 112 LST-LPELPA---SLKHLDVDNNQLT-MLPELP--------------------------- 139

Query: 744 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 803
           + L  ++   N L   +P+     + L  L++ +N L   +P        L+ LD+S N 
Sbjct: 140 ALLEYINADNNQLT-MLPELP---TSLEVLSVRNNQLT-FLPELP---ESLEALDVSTNL 191

Query: 804 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 863
           L  L      N                                                 
Sbjct: 192 LESLPAVPVRNHHS---------------------------------------------- 205

Query: 864 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 923
                          N++  HIP  I +L    T+ L  N L+  I  + S         
Sbjct: 206 ----EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260

Query: 924 LSYNKLS 930
                 S
Sbjct: 261 GPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 86.6 bits (214), Expect = 2e-17
 Identities = 57/295 (19%), Positives = 96/295 (32%), Gaps = 61/295 (20%)

Query: 655 LNNNNLSGKIPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDNNISGSLP 713
              N +SG    +       +   +P  N  E    ++ C ++    L ++  N+S SLP
Sbjct: 17  SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLP 75

Query: 714 SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHL 773
               P  I  + +++N L   L E      +SL  LD   N L+ ++P+     + L HL
Sbjct: 76  DNLPP-QITVLEITQNALI-SLPE----LPASLEYLDACDNRLS-TLPELP---ASLKHL 125

Query: 774 NLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN-NSSPDKPFK 832
           ++ +N L   +P        L+ ++  +N L  L         L    N     P+    
Sbjct: 126 DVDNNQLT-MLPELPA---LLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPE---- 177

Query: 833 TSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNL 892
                                             +   L  LD+S N L   +P      
Sbjct: 178 ----------------------------------LPESLEALDVSTNLLE-SLPAVPVRN 202

Query: 893 TRIQT----LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 943
              +          N +T  IP    +L    ++ L  N LS +I   L      
Sbjct: 203 HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.2 bits (195), Expect = 3e-15
 Identities = 49/282 (17%), Positives = 94/282 (33%), Gaps = 64/282 (22%)

Query: 688 IPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLV 747
               + + +   +   + N     L  C       ++ L++  L   L +        + 
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKECLIN-QFSELQLNRLNLS-SLPDNLP---PQIT 83

Query: 748 TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 807
            L+++ N L  S+P+     + L +L+   N L   +P        L+ LD+ +N L  L
Sbjct: 84  VLEITQNAL-ISLPELP---ASLEYLDACDNRLS-TLPELPA---SLKHLDVDNNQLTML 135

Query: 808 IPSCFDN-TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 865
            P        ++   N  +  P+                                     
Sbjct: 136 -PELPALLEYINADNNQLTMLPEL------------------------------------ 158

Query: 866 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES---- 921
              + L  L +  N+L   +P    +L     L++S N L  ++P       H E     
Sbjct: 159 --PTSLEVLSVRNNQL-TFLPELPESLEA---LDVSTNLLE-SLPAVPVRNHHSEETEIF 211

Query: 922 LDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 963
                N+++  IP  ++ L+     I+  N LS +I E  +Q
Sbjct: 212 FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.0 bits (184), Expect = 7e-14
 Identities = 44/275 (16%), Positives = 87/275 (31%), Gaps = 50/275 (18%)

Query: 2   LDLSGNAFNNNV-LSSLARLSSLRSLYLSDNRLEGSIDVKELDS--LRDLEELDIGGNKI 58
             L G   N  V L     ++    L L+   L        L       +  L+I  N +
Sbjct: 39  QALPGENRNEAVSLLKECLINQFSELQLNRLNL------SSLPDNLPPQITVLEITQNAL 92

Query: 59  DKFMVSKGLSKLKSLGLSGTGFKGTFDVREF-DSFNNLEVLDMSGNEIDNLVVPQGLERL 117
                 +  + L+ L                 +   +L+ LD+  N++  L  P+     
Sbjct: 93  ISL--PELPASLEYLDACDNRL------STLPELPASLKHLDVDNNQLTML--PEL---- 138

Query: 118 SRLSKLKKLDLRGNLCNNSILSSV-ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELD 176
              + L+ ++   N      L+ +    +SL  L + +N L         +   +LE LD
Sbjct: 139 --PALLEYINADNNQ-----LTMLPELPTSLEVLSVRNNQLTFL-----PELPESLEALD 186

Query: 177 INDNEIDNV--EVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ---SMGSFPSLNTLHLESN 231
           ++ N ++++     R +                   N++     ++ S     T+ LE N
Sbjct: 187 VSTNLLESLPAVPVRNHHSEETEIFFRCR------ENRITHIPENILSLDPTCTIILEDN 240

Query: 232 NFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQS 266
             ++     + L   T             +S  Q 
Sbjct: 241 PLSS--RIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 74.2 bits (182), Expect = 1e-13
 Identities = 57/320 (17%), Positives = 109/320 (34%), Gaps = 43/320 (13%)

Query: 91  SFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSI-LSSVARLSSLTS 149
             NN     +S N   N +     +  S   K +K  L G   N ++ L     ++  + 
Sbjct: 6   PINNN--FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSE 63

Query: 150 LHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD 209
           L L+   L  S+     +    +  L+I  N + ++           L+ LD        
Sbjct: 64  LQLNRLNLS-SLPD---NLPPQITVLEITQNALISLPEL-----PASLEYLDACD----- 109

Query: 210 GNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGS 269
            N+L        SL  L +++N     LT   EL     LEY+  D++ L   L +   S
Sbjct: 110 -NRLSTLPELPASLKHLDVDNNQ----LTMLPEL--PALLEYINADNNQLT-MLPELPTS 161

Query: 270 IFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYL 329
               L+ LS+   ++  +         +SLE LD+           L+ +        + 
Sbjct: 162 ----LEVLSVRNNQLTFL-----PELPESLEALDVSTNL-------LESLPAVPVRNHHS 205

Query: 330 SLSGSTLGTNSSRI--LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQ 387
             +        +RI  + + +  L     + +++N L   +   L+  T+          
Sbjct: 206 EETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIY 265

Query: 388 LTGSISSSPLVHLTSIEELR 407
            + S      +H    + + 
Sbjct: 266 FSMSDGQQNTLHRPLADAVT 285

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 66.1 bits (161), Expect = 3e-11
 Identities = 44/217 (20%), Positives = 75/217 (34%), Gaps = 54/217 (24%)

Query: 747 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLH 805
           ++ +  YN ++G+  D+     +     L   N    V  ++ C +NQ   L L+  NL 
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS 72

Query: 806 GLIPSCFDN-TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 863
            L  +     T L  + N   S P+ P                                 
Sbjct: 73  SLPDNLPPQITVLEITQNALISLPELPAS------------------------------- 101

Query: 864 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 923
                  L  LD   N+L   +P    +L     L++ +N LT  +P   + L +   ++
Sbjct: 102 -------LEYLDACDNRLS-TLPELPASLKH---LDVDNNQLT-MLPELPALLEY---IN 146

Query: 924 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 960
              N+L+  +P     L  L    V  N L+  +PE 
Sbjct: 147 ADNNQLT-MLPELPTSLEVL---SVRNNQLT-FLPEL 178

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.6 bits (157), Expect = 9e-11
 Identities = 48/271 (17%), Positives = 88/271 (32%), Gaps = 44/271 (16%)

Query: 2   LDLSGNAFNNNVLSSL-ARLSSLRSLYLSDNRLEGSIDVKEL-DSLRDLEELDIGGNKID 59
           L+++ NA     L SL    +SL  L   DNRL        L +    L+ LD+  N++ 
Sbjct: 85  LEITQNA-----LISLPELPASLEYLDACDNRLS------TLPELPASLKHLDVDNNQLT 133

Query: 60  KFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNL-VVPQGLERLS 118
                +  + L+ +                +   +LEVL +  N++  L  +P+ LE L 
Sbjct: 134 ML--PELPALLEYINADNNQLTML-----PELPTSLEVLSVRNNQLTFLPELPESLEALD 186

Query: 119 --------------RLSKLKKLDLRGNLCNNSILS---SVARLSSLTSLHLSHNILQGSI 161
                         R    ++ ++      N I     ++  L    ++ L  N L   I
Sbjct: 187 VSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRI 246

Query: 162 DAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFP 221
              E  S    +          ++   +     R L     +       + + Q   +F 
Sbjct: 247 R--ESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFE 304

Query: 222 SLNTLHLESNNFTATLTTTQELHNFTNLEYL 252
                   +N F+A L    +  +  N    
Sbjct: 305 HE----EHANTFSAFLDRLSDTVSARNTSGF 331

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 94.6 bits (235), Expect = 4e-21
 Identities = 66/301 (21%), Positives = 105/301 (34%), Gaps = 43/301 (14%)

Query: 497 LLENNTKLEFLYLVNDSLAGPFRLPIHSHK-RLRFLDVSNNNFQGHIPVEIGDILPSLVY 555
           L      LE+L    D+ A   +         L+ L V        I      +L     
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVL----- 92

Query: 556 FNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP-DHLAMCCVNLEFLSLSNNSLKG 614
                             +  LQ L L N ++TG  P   L     +L  L+L N S   
Sbjct: 93  -----------------GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135

Query: 615 HIFS----RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW--- 667
                   + +    L+ L +   H +    + +    +L  L L++N   G+       
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

Query: 668 -LGNLKGLQHIVMPKNHLE---GPIPVEFCRLDSLQILDISDNNISGSLP--SCFYPLSI 721
                  LQ + +    +E   G           LQ LD+S N++  +    SC +P  +
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 722 KQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE 781
             ++LS   L  Q+ +G     + L  LDLSYN L+   P   D L Q+ +L+L  N   
Sbjct: 256 NSLNLSFTGLK-QVPKGLP---AKLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPFL 309

Query: 782 G 782
            
Sbjct: 310 D 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 90.3 bits (224), Expect = 1e-19
 Identities = 55/248 (22%), Positives = 86/248 (34%), Gaps = 26/248 (10%)

Query: 2   LDLSGNAFNNNVLSSLARL---SSLRSLYLSDNRLEGSIDVKELD-SLRDLEELDIGGNK 57
           L +      + +L    R+   S L+ L L +  + G+     L+ +  DL  L++    
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 58  IDKF------MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVP 111
                     +       LK L ++       F   +   F  L  LD+S N        
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 112 QGLERLSRLSKLKKLDLRGNLCN---NSILSSVARLSSLTSLHLSHNILQGSIDAKEFDS 168
                  +   L+ L LR            +  A    L  L LSHN L+ +  A   D 
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 169 LSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL--LQSMGSFPSLNTL 226
            S L  L+++   +   +V +G     KL  LDLS       N+L    S    P +  L
Sbjct: 252 PSQLNSLNLSFTGLK--QVPKGL--PAKLSVLDLS------YNRLDRNPSPDELPQVGNL 301

Query: 227 HLESNNFT 234
            L+ N F 
Sbjct: 302 SLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.8 bits (207), Expect = 1e-17
 Identities = 52/299 (17%), Positives = 84/299 (28%), Gaps = 35/299 (11%)

Query: 372 LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLK 429
                SL  L    +        + ++   S++ L +       RI      +   S L+
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 430 IFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKM 489
               +N E+ G             L  L+L +      T   +L                
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNV--SWATRDAWL---------------- 140

Query: 490 IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE---I 546
             E   WL      L      + + +      +     L  LD+S+N   G   +     
Sbjct: 141 -AELQQWLKPGLKVLSIAQAHSLNFSCEQ---VRVFPALSTLDLSDNPELGERGLISALC 196

Query: 547 GDILPSLVYFNISMN---ALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE 603
               P+L    +         G   +     + LQ LDLS+N L              L 
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256

Query: 604 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG 662
            L+LS   LK  +   + +   L  L L  N      P    +   +  L L  N    
Sbjct: 257 SLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRL-DRNPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.7 bits (186), Expect = 9e-15
 Identities = 57/309 (18%), Positives = 96/309 (31%), Gaps = 62/309 (20%)

Query: 622 SLRNLRWLLLEGNHFVGEIP-QSLSKCSSLKGLYLNNNNLSGKIPRW---LGNLKGLQHI 677
             R+L +LL   +          + K  SLK L +    +  +I      +  + GLQ +
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 678 VMPKNHLEGPIPVEFCRLD--SLQILDISDNNISGSLP-----SCFYPLSIKQVHLSKNM 730
            +    + G  P          L IL++ + + +           +    +K + +++  
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 731 LHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI----DGLSQLSHLNLAHNNLE---GE 783
                         +L TLDLS N   G               L  L L +  +E   G 
Sbjct: 161 S-LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 784 VPIQLCRLNQLQLLDLSDNNLHGLIP--SCFDNTTLHE---SYNNNSSPDKPFKTSFSIS 838
                    QLQ LDLS N+L       SC   + L+    S+                 
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT---------------- 263

Query: 839 GPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTL 898
                    + ++ +                 L+ LDLS N+L     P    L ++  L
Sbjct: 264 --------GLKQVPKGLPAK------------LSVLDLSYNRLDR--NPSPDELPQVGNL 301

Query: 899 NLSHNNLTG 907
           +L  N    
Sbjct: 302 SLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.5 bits (175), Expect = 2e-13
 Identities = 49/294 (16%), Positives = 94/294 (31%), Gaps = 34/294 (11%)

Query: 126 LDLRGNLCNNSILSSVARLSSLTSLHLSHNIL--QGSIDAKEFDSLSNLEELDINDNEI- 182
           L       +    + + +  SL  L +    +  +    A     +S L+EL + + E+ 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 183 DNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQE 242
                         L  L+L  V     +  L  +  +       L      +   + ++
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 243 LHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHL 302
           +  F  L  L L D+   +     I ++ P                       F +L+ L
Sbjct: 169 VRVFPALSTLDLSDNPE-LGERGLISALCPL---------------------KFPTLQVL 206

Query: 303 DMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN 362
            +R A +   +     +  +   L+ L LS ++L               + L  L +   
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL---RDAAGAPSCDWPSQLNSLNLSFT 263

Query: 363 DLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIP 416
            L+  +P  L     L +LD+S+N+L     +     L  +  L L  N F   
Sbjct: 264 GLK-QVPKGLP--AKLSVLDLSYNRLD---RNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.6 bits (165), Expect = 4e-12
 Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 10/201 (4%)

Query: 273 SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLS 332
           +++   +    + G L   G    + L   ++        T+   ++  + P L  L+L 
Sbjct: 74  TVRAARIPSRILFGALRVLGISGLQELTLENLEV----TGTAPPPLLEATGPDLNILNLR 129

Query: 333 GSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSI 392
             +  T  + + +        L+ L I            +    +L  LD+S N   G  
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 393 S---SSPLVHLTSIEELRLSNNHFRIPVSLEP--LFNHSKLKIFDAKNNEINGEINESHS 447
               +   +   +++ L L N     P  +         +L+  D  +N +         
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 448 LTPKFQLKSLSLSSNYGDSVT 468
             P  QL SL+LS      V 
Sbjct: 250 DWPS-QLNSLNLSFTGLKQVP 269

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.7 bits (147), Expect = 7e-10
 Identities = 44/247 (17%), Positives = 71/247 (28%), Gaps = 34/247 (13%)

Query: 719 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW---IDGLSQLSHLNL 775
            S++ +    +      +        SL  L +    +   I      + G+S L  L L
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 776 AHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSF 835
            +  + G  P  L       L  L+  N+           T            KP     
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVS--------WATRDAWLAELQQWLKPGLKVL 154

Query: 836 SISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP----PQIGN 891
           SI+             F           Q RV   L+ LDLS N  +G            
Sbjct: 155 SIAQAH-------SLNFSCE--------QVRVFPALSTLDLSDNPELGERGLISALCPLK 199

Query: 892 LTRIQTLNLSHNNLT---GTIPLTFSNLRHIESLDLSYNKLSGKIPRQL-VDLNTLAIFI 947
              +Q L L +  +    G      +    ++ LDLS+N L            + L    
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 948 VAYNNLS 954
           +++  L 
Sbjct: 260 LSFTGLK 266

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 87.3 bits (217), Expect = 1e-19
 Identities = 38/205 (18%), Positives = 77/205 (37%), Gaps = 16/205 (7%)

Query: 5   SGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS 64
              A  +NV    +   +  +  L  +    +I   +++SL     + +    +      
Sbjct: 7   GLKASQDNVNIPDSTFKAYLNGLLGQSST-ANITEAQMNSL---TYITLANINVTDLTGI 62

Query: 65  KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLK 124
           +    +K L ++        +       +NLE L + G ++ +      +  LS L+ L 
Sbjct: 63  EYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSD----KIPNLSGLTSLT 115

Query: 125 KLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDN 184
            LD+  +  ++SIL+ +  L  + S+ LS+N     I      +L  L+ L+I  + + +
Sbjct: 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD 173

Query: 185 VEVSRGYRGLRKLKSLDLSGVGIRD 209
                G     KL  L      I  
Sbjct: 174 YR---GIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 82.3 bits (204), Expect = 5e-18
 Identities = 38/193 (19%), Positives = 84/193 (43%), Gaps = 19/193 (9%)

Query: 43  DSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSG 102
            + +      +G +       ++ ++ L  + L+        D+   +  +N++ L ++ 
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQ-MNSLTYITLANINVT---DLTGIEYAHNIKDLTINN 75

Query: 103 NEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSID 162
               N         +S LS L++L + G    +  + +++ L+SLT L +SH+    S  
Sbjct: 76  IHATNY------NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS-I 128

Query: 163 AKEFDSLSNLEELDINDN-EIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFP 221
             + ++L  +  +D++ N  I ++      + L +LKSL++   G+ D     + +  FP
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHD----YRGIEDFP 181

Query: 222 SLNTLHLESNNFT 234
            LN L+  S    
Sbjct: 182 KLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 80.0 bits (198), Expect = 3e-17
 Identities = 32/185 (17%), Positives = 67/185 (36%), Gaps = 36/185 (19%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           + L+     +  L+ +    +++ L +++       +   +  L +LE L I G  +   
Sbjct: 49  ITLANINVTD--LTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSD 103

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
            +   LS L                       +L +LD+S +  D+      L +++ L 
Sbjct: 104 KIP-NLSGLT----------------------SLTLLDISHSAHDDS----ILTKINTLP 136

Query: 122 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNE 181
           K+  +DL  N     I   +  L  L SL++  + +    D +  +    L +L      
Sbjct: 137 KVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQT 192

Query: 182 IDNVE 186
           I   +
Sbjct: 193 IGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 9e-13
 Identities = 28/171 (16%), Positives = 63/171 (36%), Gaps = 17/171 (9%)

Query: 271 FPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLS 330
             SL  ++++   V  +    G  +  +++ L +       N + +      + +L+ L 
Sbjct: 43  MNSLTYITLANINVTDL---TGIEYAHNIKDLTINNIHAT-NYNPI----SGLSNLERLR 94

Query: 331 LSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTG 390
           + G  + ++        L  L  L  L I ++    S+   +     +  +D+S+N    
Sbjct: 95  IMGKDVTSDKI----PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 391 SISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE 441
            I   PL  L  ++ L +  +          + +  KL    A +  I G+
Sbjct: 151 DI--MPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 8/135 (5%)

Query: 577 LQFLDLSNNKLTGEIP-DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH 635
           ++ L ++N   T   P   L     NLE L +    +       +  L +L  L +  + 
Sbjct: 68  IKDLTINNIHATNYNPISGL----SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123

Query: 636 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRL 695
               I   ++    +  + L+ N     I   L  L  L+ + +  + +     +E    
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIE--DF 180

Query: 696 DSLQILDISDNNISG 710
             L  L      I G
Sbjct: 181 PKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 31/182 (17%)

Query: 623 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN 682
           + +L ++ L   + V ++   +    ++K L +NN + +   P  +  L  L+ + +   
Sbjct: 43  MNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK 98

Query: 683 HLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN 742
            +          L SL +LDIS +    S+ +                            
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN------------------------T 134

Query: 743 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 802
              + ++DLSYN     I   +  L +L  LN+  + +     I+     +L  L     
Sbjct: 135 LPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQ 191

Query: 803 NL 804
            +
Sbjct: 192 TI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 26/192 (13%), Positives = 67/192 (34%), Gaps = 21/192 (10%)

Query: 142 ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLD 201
           +   +  +  L  +    S        +++L  + + +  + ++    G      +K L 
Sbjct: 20  STFKAYLNGLLGQS----STANITEAQMNSLTYITLANINVTDLT---GIEYAHNIKDLT 72

Query: 202 LSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHI 261
           ++ +   +       +    +L  L +   + T+       L   T+L  L +  S+   
Sbjct: 73  INNIHATN----YNPISGLSNLERLRIMGKDVTSDKIP--NLSGLTSLTLLDISHSAHDD 126

Query: 262 SLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE 321
           S+L  I ++ P + ++ +S       +          L+ L+++F  +  +   +    E
Sbjct: 127 SILTKINTL-PKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVH-DYRGI----E 178

Query: 322 SMPSLKYLSLSG 333
             P L  L    
Sbjct: 179 DFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.2 bits (144), Expect = 6e-10
 Identities = 31/243 (12%), Positives = 70/243 (28%), Gaps = 84/243 (34%)

Query: 689 PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT 748
            +   +++SL  + +++ N++           +  +                    ++  
Sbjct: 37  NITEAQMNSLTYITLANINVT----------DLTGIE----------------YAHNIKD 70

Query: 749 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 808
           L ++  +     P  I GLS L  L +   ++  +    L  L  L LLD+S +     I
Sbjct: 71  LTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 809 PSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVL 868
            +  +                                                      L
Sbjct: 129 LTKINT-----------------------------------------------------L 135

Query: 869 SLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK 928
             +  +DLS N  +  I P +  L  +++LN+  + +     +   +   +  L      
Sbjct: 136 PKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGI--EDFPKLNQLYAFSQT 192

Query: 929 LSG 931
           + G
Sbjct: 193 IGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 30/190 (15%), Positives = 70/190 (36%), Gaps = 29/190 (15%)

Query: 620 IFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM 679
                  +  L            + ++ +SL  + L N N++      +     ++ + +
Sbjct: 16  NIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTI 73

Query: 680 PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGT 739
              H     P+    L +L+ L I   +++         LS                   
Sbjct: 74  NNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIP---NLS------------------- 109

Query: 740 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 799
               +SL  LD+S++  + SI   I+ L +++ ++L++N    ++   L  L +L+ L++
Sbjct: 110 --GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNI 166

Query: 800 SDNNLHGLIP 809
             + +H    
Sbjct: 167 QFDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 60
           +LD+S +A ++++L+ +  L  + S+ LS N      D+  L +L +L+ L+I  + +  
Sbjct: 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT--DIMPLKTLPELKSLNIQFDGVHD 173

Query: 61  FMVSKGLSKLKSLGLSGT 78
           +   +   KL  L     
Sbjct: 174 YRGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 868 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 927
           LS L  L +    +     P +  LT +  L++SH+    +I    + L  + S+DLSYN
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 928 KLSGKIPRQLVDLNTLAIFIVAYNNLS 954
                I   L  L  L    + ++ + 
Sbjct: 147 GAITDIM-PLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 30/205 (14%), Positives = 62/205 (30%), Gaps = 47/205 (22%)

Query: 391 SISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTP 450
           S ++     + S+  + L+N +      L  +     +K     N       N    L+ 
Sbjct: 34  STANITEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHAT-NYNPISGLS- 88

Query: 451 KFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV 510
              L+ L +                  ++   ++ +           L   T L  L + 
Sbjct: 89  --NLERLRIMGK---------------DVTSDKIPN-----------LSGLTSLTLLDIS 120

Query: 511 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI-----LPSLVYFNISMNALDG 565
           + +        I++  ++  +D+S N         I DI     LP L   NI  + +  
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNG-------AITDIMPLKTLPELKSLNIQFDGVHD 173

Query: 566 SIPSSFGNVIFLQFLDLSNNKLTGE 590
                  +   L  L   +  + G+
Sbjct: 174 Y--RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 868 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 927
              +  L ++      +  P I  L+ ++ L +   ++T       S L  +  LD+S++
Sbjct: 65  AHNIKDLTINNIHA-TNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 928 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 957
                I  ++  L  +    ++YN     I
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 868 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 927
           ++ L  + L+    V  +   I     I+ L +++ + T   P+  S L ++E L +   
Sbjct: 43  MNSLTYITLANIN-VTDLTG-IEYAHNIKDLTINNIHATNYNPI--SGLSNLERLRIMGK 98

Query: 928 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 959
            ++      L  L +L +  ++++     I  
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 57/241 (23%), Positives = 100/241 (41%), Gaps = 40/241 (16%)

Query: 21  SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGF 80
            S ++L LS N L   +      S  +L+ LD+   +I                      
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ--------------------- 65

Query: 81  KGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSS 140
             T +   + S ++L  L ++GN I +L    G    S LS L+KL       N + L +
Sbjct: 66  --TIEDGAYQSLSHLSTLILTGNPIQSL--ALGA--FSGLSSLQKLVAVET--NLASLEN 117

Query: 141 VA--RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLK 198
                L +L  L+++HN++Q     + F +L+NLE LD++ N+I ++      R L ++ 
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMP 176

Query: 199 SLDLSGVGIRDGNKLLQ-SMGSFPSLN--TLHLESNNFTATLTTTQELHNFTNLEYLTLD 255
            L+LS       N +     G+F  +    L L++N   +           T+L+ + L 
Sbjct: 177 LLNLSLD--LSLNPMNFIQPGAFKEIRLKELALDTNQLKS--VPDGIFDRLTSLQKIWLH 232

Query: 256 D 256
            
Sbjct: 233 T 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 54/214 (25%), Positives = 86/214 (40%), Gaps = 24/214 (11%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           LDLS N   +    S      L+ L LS   ++ +I+     SL  L  L + GN I   
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 62  --MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSR 119
                 GLS L+ L    T    + +         L+ L+++ N I +  +P   E  S 
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSN 147

Query: 120 LSKLKKLDLRGNLCNNSILSSV-----ARLSSLT----SLHLSHNILQGSIDAKEFDSLS 170
           L+ L+ LDL  N      + S+       L  +     SL LS N +   I    F  + 
Sbjct: 148 LTNLEHLDLSSNK-----IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI- 200

Query: 171 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 204
            L+EL ++ N++ +V     +  L  L+ + L  
Sbjct: 201 RLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 60/293 (20%), Positives = 92/293 (31%), Gaps = 83/293 (28%)

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 698
           +IP +L    S K L L+ N L   +                           F     L
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLR-HLG-----------------------SYSFFSFPEL 54

Query: 699 QILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 756
           Q+LD+S   I  ++    +  L  +  + L+ N +   L  G F   SSL  L      L
Sbjct: 55  QVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL 112

Query: 757 NGSIPDWI-DGLSQLSHLNLAHNNL-EGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 814
             S+ ++    L  L  LN+AHN +   ++P     L  L+ LDLS N +  +  +    
Sbjct: 113 A-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 815 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 874
                                                              ++  L   L
Sbjct: 172 LH-------------------------------------------------QMPLLNLSL 182

Query: 875 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 927
           DLS N +   I P      R++ L L  N L       F  L  ++ + L  N
Sbjct: 183 DLSLNPM-NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 17/197 (8%)

Query: 568 PSSFGNVIFLQFLDLSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSLKGHIFSRIFS- 622
             SF +   LQ LDLS  ++   I       L     +L  L L+ N ++  +    FS 
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSL----SHLSTLILTGNPIQ-SLALGAFSG 98

Query: 623 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL-SGKIPRWLGNLKGLQHIVMPK 681
           L +L+ L+    +        +    +LK L + +N + S K+P +  NL  L+H+ +  
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 682 NHLEGPIPVEFCRLDSLQI----LDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKE 737
           N ++     +   L  + +    LD+S N ++   P  F  + +K++ L  N L   + +
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPD 217

Query: 738 GTFFNCSSLVTLDLSYN 754
           G F   +SL  + L  N
Sbjct: 218 GIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 79.6 bits (197), Expect = 2e-16
 Identities = 45/189 (23%), Positives = 79/189 (41%), Gaps = 21/189 (11%)

Query: 2   LDLSGNAFNNNVLSSL-----ARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGN 56
           LDLS        + ++       LS L +L L+ N ++ S+ +     L  L++L     
Sbjct: 57  LDLS-----RCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVET 110

Query: 57  KIDKF--MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGL 114
            +          L  LK L ++    +       F +  NLE LD+S N+I ++      
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI--YCTD 168

Query: 115 ERLSRLSKLKKLDLRGNLCNN---SILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSN 171
             L  L ++  L+L  +L  N    I     +   L  L L  N L+ S+    FD L++
Sbjct: 169 --LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTS 225

Query: 172 LEELDINDN 180
           L+++ ++ N
Sbjct: 226 LQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 55/267 (20%), Positives = 88/267 (32%), Gaps = 69/267 (25%)

Query: 567 IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRN 625
           +P S       + LDLS N L   +  +       L+ L LS   ++  I    +  L +
Sbjct: 26  LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 626 LRWLLLEGNHFVGEIPQSL-SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 684
           L  L+L GN  +  +     S  SSL+ L     NL+  +                    
Sbjct: 78  LSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLA-SLE------------------- 116

Query: 685 EGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCS 744
                     L +L+ L+++ N I  S                            F N +
Sbjct: 117 ----NFPIGHLKTLKELNVAHNLIQ-SFKL----------------------PEYFSNLT 149

Query: 745 SLVTLDLSYNYLNGSIPDWI-DGLSQL----SHLNLAHNNLEGEVPIQLCRLNQLQLLDL 799
           +L  LDLS N +  SI       L Q+      L+L+ N +   +     +  +L+ L L
Sbjct: 150 NLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELAL 207

Query: 800 SDNNLHGLIPSCFDN----TTLHESYN 822
             N L  +    FD       +    N
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 57/260 (21%), Positives = 96/260 (36%), Gaps = 45/260 (17%)

Query: 133 CNNSILSSV-ARL-SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 190
           C       +   L  S  +L LS N L+  + +  F S   L+ LD++  EI  +E    
Sbjct: 14  CMELNFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDG-A 71

Query: 191 YRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNF 246
           Y+ L  L +L L+G      N +   ++G+F    SL  L     N  +       + + 
Sbjct: 72  YQSLSHLSTLILTG------NPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHL 123

Query: 247 TNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 306
             L+ L +  + +     QS                ++        F +  +LEHLD+  
Sbjct: 124 KTLKELNVAHNLI-----QSF---------------KLPEY-----FSNLTNLEHLDLSS 158

Query: 307 ARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRG 366
            +I    S        +  +  L+LS   L  N    +  G      L+EL +D N L+ 
Sbjct: 159 NKI---QSIYCTDLRVLHQMPLLNLSLD-LSLNPMNFIQPGAFKEIRLKELALDTNQLKS 214

Query: 367 SLPWCLANTTSLRILDVSFN 386
                    TSL+ + +  N
Sbjct: 215 VPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 54/243 (22%), Positives = 77/243 (31%), Gaps = 62/243 (25%)

Query: 718 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 776
           P S K + LS N L   L   +FF+   L  LDLS   +  +I D     LS LS L L 
Sbjct: 27  PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84

Query: 777 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFS 836
            N ++         L+ LQ L   + NL  L      +                      
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH---------------------- 122

Query: 837 ISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRI 895
                                          L  L  L+++ N +     P+   NLT +
Sbjct: 123 -------------------------------LKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 896 QTLNLSHNNLTGTIPLTFSNLRHIE----SLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 951
           + L+LS N +          L  +     SLDLS N ++  I         L    +  N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTN 210

Query: 952 NLS 954
            L 
Sbjct: 211 QLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 54/252 (21%), Positives = 88/252 (34%), Gaps = 73/252 (28%)

Query: 322 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRI 380
           S P L+ L LS   + T            L+HL  L +  N ++ SL     +  +SL+ 
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQS----LSHLSTLILTGNPIQ-SLALGAFSGLSSLQK 104

Query: 381 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEING 440
           L      L  S+ + P+ HL +++EL +++N  +   S +        + F         
Sbjct: 105 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ---SFK------LPEYFS-------- 146

Query: 441 EINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLEN 500
                 +LT    L+ L LSSN                        I+ I       L  
Sbjct: 147 ------NLT---NLEHLDLSSN-----------------------KIQSI---YCTDLRV 171

Query: 501 NTKLEF----LYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPS 552
             ++      L L  + +     G F+       RL+ L +  N  +  +P  I D L S
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-----RLKELALDTNQLK-SVPDGIFDRLTS 225

Query: 553 LVYFNISMNALD 564
           L    +  N  D
Sbjct: 226 LQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 25/179 (13%)

Query: 293 FPHFKSLEHLDMRFARIALNTSFLQIIGE----SMPSLKYLSLSGSTLGTNSSRILDQGL 348
           F  F  L+ LD       L+   +Q I +    S+  L  L L+G+ + + +        
Sbjct: 48  FFSFPELQVLD-------LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-- 98

Query: 349 CPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRL 408
             L+ LQ+L     +L     + + +  +L+ L+V+ N +          +LT++E L L
Sbjct: 99  --LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 409 SNNHFRIPVSLEP-LFNHSKLKIFDAKNNEINGEINESHSLTP----KFQLKSLSLSSN 462
           S+N  +   S+         L      N  ++  +N  + + P    + +LK L+L +N
Sbjct: 157 SSNKIQ---SIYCTDL--RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN 210

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 84.7 bits (210), Expect = 3e-18
 Identities = 46/241 (19%), Positives = 82/241 (34%), Gaps = 27/241 (11%)

Query: 14  LSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSL 73
           +     L++     L    +    D+     L  ++  +   + I      +  + LK L
Sbjct: 12  VFPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKEL 68

Query: 74  GLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLC 133
            LS        D+        LE L ++ N + NL    G+        L +L L  N  
Sbjct: 69  HLSHNQIS---DLSPLKDLTKLEELSVNRNRLKNL---NGIPSA----CLSRLFLDNN-- 116

Query: 134 NNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRG 193
                 S+  L +L  L + +N L+          LS LE LD++ NEI N     G   
Sbjct: 117 ELRDTDSLIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEITNTG---GLTR 170

Query: 194 LRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLT 253
           L+K+  +DL+      G K +     +     +     +      +   + N  +     
Sbjct: 171 LKKVNWIDLT------GQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGC 224

Query: 254 L 254
           +
Sbjct: 225 V 225

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 83.9 bits (208), Expect = 6e-18
 Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 22/197 (11%)

Query: 38  DVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEV 97
            V     L +  + ++G   +   +  K LS +++     +  +    +     F NL+ 
Sbjct: 11  QVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKE 67

Query: 98  LDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNIL 157
           L +S N+I +      L  L  L+KL++L +  N      L+ +     L+ L L +N L
Sbjct: 68  LHLSHNQISD------LSPLKDLTKLEELSVNRN--RLKNLNGIPSA-CLSRLFLDNNEL 118

Query: 158 QGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSM 217
           +   D      L NLE L I +N++ ++        L KL+ LDL G  I +       +
Sbjct: 119 R---DTDSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITN----TGGL 168

Query: 218 GSFPSLNTLHLESNNFT 234
                +N + L      
Sbjct: 169 TRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 41/197 (20%), Positives = 76/197 (38%), Gaps = 28/197 (14%)

Query: 243 LHNFTNLEYLTLDDSSL-HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEH 301
                N     L   S+  +   +        ++N +      + + S  G   F +L+ 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKE----LSGVQNFNGDN---SNIQSLAGMQFFTNLKE 67

Query: 302 LDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDN 361
           L +   +I+ + S L    + +  L+ LS++ +       R+ +    P A L  L++DN
Sbjct: 68  LHLSHNQIS-DLSPL----KDLTKLEELSVNRN-------RLKNLNGIPSACLSRLFLDN 115

Query: 362 NDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP 421
           N+LR +    L +  +L IL +  N+L    S   L  L+ +E L L  N      +   
Sbjct: 116 NELRDTDS--LIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEIT---NTGG 167

Query: 422 LFNHSKLKIFDAKNNEI 438
           L    K+   D    + 
Sbjct: 168 LTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 50/290 (17%), Positives = 91/290 (31%), Gaps = 61/290 (21%)

Query: 174 ELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNF 233
           E       I+ V       GL      +L    + D    L S      +   + +++N 
Sbjct: 1   ESIQRPTPINQVF---PDPGLANAVKQNLGKQSVTD----LVSQKELSGVQNFNGDNSN- 52

Query: 234 TATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGF 293
              + +   +  FTNL+ L L  + +              L  L                
Sbjct: 53  ---IQSLAGMQFFTNLKELHLSHNQIS------------DLSPLK--------------- 82

Query: 294 PHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 353
                LE L +   R+        + G     L  L L  + L           L  L +
Sbjct: 83  -DLTKLEELSVNRNRLK------NLNGIPSACLSRLFLDNNELRDTD------SLIHLKN 129

Query: 354 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 413
           L+ L I NN L+ S+   L   + L +LD+  N++T   ++  L  L  +  + L+    
Sbjct: 130 LEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT---NTGGLTRLKKVNWIDLTGQ-- 182

Query: 414 RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNY 463
                 EP+    +L I +   +  +G     + ++         +    
Sbjct: 183 --KCVNEPVKYQPELYITNTVKD-PDGRWISPYYISNGGSYVDGCVLWEL 229

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 10/127 (7%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 60
            L ++ N   N  L+ +     L  L+L +N L    D   L  L++LE L I  NK+  
Sbjct: 89  ELSVNRNRLKN--LNGIPSAC-LSRLFLDNNELR---DTDSLIHLKNLEILSIRNNKLKS 142

Query: 61  FMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRL 120
            ++   LSKL+ L L G       +         +  +D++G +  N  V      L   
Sbjct: 143 IVMLGFLSKLEVLDLHGNEIT---NTGGLTRLKKVNWIDLTGQKCVNEPVKY-QPELYIT 198

Query: 121 SKLKKLD 127
           + +K  D
Sbjct: 199 NTVKDPD 205

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 36/228 (15%), Positives = 73/228 (32%), Gaps = 40/228 (17%)

Query: 577 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 636
               +L    +T  +          ++  +  N++++    + +    NL+ L L  N  
Sbjct: 21  AVKQNLGKQSVTDLVSQK---ELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHLSHNQ- 74

Query: 637 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 696
           + ++   L   + L+ L +N N L       + +   L  + +  N L          L 
Sbjct: 75  ISDLS-PLKDLTKLEELSVNRNRLKNLNG--IPSAC-LSRLFLDNNELRDTDS--LIHLK 128

Query: 697 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 756
           +L+IL I +N +           SI  +                   S L  LDL  N +
Sbjct: 129 NLEILSIRNNKLK----------SIVMLG----------------FLSKLEVLDLHGNEI 162

Query: 757 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 804
             +    +  L +++ ++L       E       L     +   D   
Sbjct: 163 T-NTGG-LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 36/191 (18%), Positives = 69/191 (36%), Gaps = 21/191 (10%)

Query: 521 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL 580
           P          ++   +    +  +    L  +  FN   + +     +       L+ L
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVSQKE---LSGVQNFNGDNSNI--QSLAGMQFFTNLKEL 68

Query: 581 DLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR--NLRWLLLEGNHFVG 638
            LS+N+++ ++   L      LE LS++ N L       +  +    L  L L+ N    
Sbjct: 69  HLSHNQIS-DLSP-LKDL-TKLEELSVNRNRL-----KNLNGIPSACLSRLFLDNNEL-- 118

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 698
               SL    +L+ L + NN L   I   LG L  L+ + +  N +     +   RL  +
Sbjct: 119 RDTDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGGLT--RLKKV 174

Query: 699 QILDISDNNIS 709
             +D++     
Sbjct: 175 NWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 44/190 (23%)

Query: 742 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 801
             S +   +   + +  S+   +   + L  L+L+HN +    P  L  L +L+ L ++ 
Sbjct: 39  ELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94

Query: 802 NNLHGLIPSCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 860
           N L  L        + L    N     D       S+                       
Sbjct: 95  NRLKNLNGIPSACLSRLFLDNNELRDTD-------SLIH--------------------- 126

Query: 861 YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 920
                  L  L  L +  NKL   I   +G L++++ L+L  N +T T  L  + L+ + 
Sbjct: 127 -------LKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGGL--TRLKKVN 175

Query: 921 SLDLSYNKLS 930
            +DL+  K  
Sbjct: 176 WIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 48/274 (17%), Positives = 79/274 (28%), Gaps = 58/274 (21%)

Query: 395 SPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQL 454
            P   L +  +  L          L      S ++ F+  N+ I   +      T    L
Sbjct: 13  FPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ-SLAGMQFFT---NL 65

Query: 455 KSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL 514
           K L LS N                    ++S +          L++ TKLE L +  + L
Sbjct: 66  KELHLSHN--------------------QISDLSP--------LKDLTKLEELSVNRNRL 97

Query: 515 AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI-----LPSLVYFNISMNALDGSIPS 569
                L       L  L + NN         + D      L +L   +I  N L  SI  
Sbjct: 98  K---NLNGIPSACLSRLFLDNNE--------LRDTDSLIHLKNLEILSIRNNKLK-SI-V 144

Query: 570 SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 629
             G +  L+ LDL  N++T             + ++ L+              L     +
Sbjct: 145 MLGFLSKLEVLDLHGNEITNTGGLT---RLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

Query: 630 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGK 663
                 ++   P  +S   S     +        
Sbjct: 202 KDPDGRWIS--PYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 24/193 (12%)

Query: 764 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP-SCFDN-TTLHESY 821
             GL+     NL   ++   V  +   L+ +Q  +  ++N+  L     F N   LH S+
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSH 72

Query: 822 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 881
           N  S           +S  +   + + L +     KN+     G   + L+ L L  N+L
Sbjct: 73  NQIS----------DLSPLKDLTKLEELSVNRNRLKNL----NGIPSACLSRLFLDNNEL 118

Query: 882 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 941
                  + +L  ++ L++ +N L   + L    L  +E LDL  N+++      L  L 
Sbjct: 119 R-DTDS-LIHLKNLEILSIRNNKLKSIVML--GFLSKLEVLDLHGNEITNTGG--LTRLK 172

Query: 942 TLAIFIVAYNNLS 954
            +    +      
Sbjct: 173 KVNWIDLTGQKCV 185

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 83.7 bits (207), Expect = 3e-17
 Identities = 54/271 (19%), Positives = 87/271 (32%), Gaps = 18/271 (6%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDI-GGNKIDK 60
           L             + +    L  + +S N +   I+     +L  L E+ I   N +  
Sbjct: 35  LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94

Query: 61  F--MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLS 118
                 + L  L+ L +S TG K               +LD+  N   + +       LS
Sbjct: 95  INPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153

Query: 119 RLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIN 178
              +   L L  N     I +S    + L  L+LS N     +    F   S    LDI+
Sbjct: 154 --FESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210

Query: 179 DNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESN----NFT 234
              I ++  S G   L+KL++            K L ++    +L    L        F 
Sbjct: 211 RTRIHSLP-SYGLENLKKLRARSTY------NLKKLPTLEKLVALMEASLTYPSHCCAFA 263

Query: 235 ATLTTTQELHNFTNLEYLTLDDSSLHISLLQ 265
                  ELH   N   L  +   +  +  Q
Sbjct: 264 NWRRQISELHPICNKSILRQEVDYMTQARGQ 294

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 81.8 bits (202), Expect = 1e-16
 Identities = 49/234 (20%), Positives = 91/234 (38%), Gaps = 12/234 (5%)

Query: 577 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 635
              L     KL   I         +LE + +S N +   I + +FS L  L  + +E  +
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 636 FVGEIP-QSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN-HLEGPIPVEFC 693
            +  I  ++     +L+ L ++N  +         +      + +  N ++       F 
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 694 RL-DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 752
            L     IL ++ N I     S F    + +++LS N    +L    F   S  V LD+S
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210

Query: 753 YNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 805
              ++ S+P +  + L +L   +    NL+ ++P  L +L  L    L+    H
Sbjct: 211 RTRIH-SLPSYGLENLKKLRARST--YNLK-KLPT-LEKLVALMEASLT-YPSH 258

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.9 bits (171), Expect = 9e-13
 Identities = 38/249 (15%), Positives = 78/249 (31%), Gaps = 23/249 (9%)

Query: 689 PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT 748
               C   S ++    ++ ++  +PS   P +  ++      L   +++G F     L  
Sbjct: 3   HHRICHC-SNRVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLR-VIQKGAFSGFGDLEK 58

Query: 749 LDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNNLHG 806
           +++S N +   I   +   L +L  + +   N    +  +  + L  LQ L +S+  +  
Sbjct: 59  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118

Query: 807 LIPSCFDN----TTLHESYNNN--SSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 860
           L      +      L    N N  +     F       G         L        +  
Sbjct: 119 LPDVHKIHSLQKVLLDIQDNINIHTIERNSF------VGLSFESVILWLNKNGIQEIH-N 171

Query: 861 YAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 919
            A+ G    L        N L   +P  +    +    L++S   +         NL+ +
Sbjct: 172 SAFNG--TQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 228

Query: 920 ESLDLSYNK 928
            +      K
Sbjct: 229 RARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 48/278 (17%), Positives = 86/278 (30%), Gaps = 40/278 (14%)

Query: 94  NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVA--RLSSLTSLH 151
           +  V     +++    +P  L          +L          ++   A      L  + 
Sbjct: 10  SNRVFLCQESKVTE--IPSDL-----PRNAIELRFVLT--KLRVIQKGAFSGFGDLEKIE 60

Query: 152 LSHNILQGSIDAKEFDSLSNLEELDI-NDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDG 210
           +S N +   I+A  F +L  L E+ I   N +  +     ++ L  L+ L +S  GI+  
Sbjct: 61  ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLISNTGIKH- 118

Query: 211 NKLLQSMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSI 267
              L              L ++ N    T+     +        L L+ +   I  + + 
Sbjct: 119 ---LPD-VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN--GIQEIHN- 171

Query: 268 GSIFPSLKNLSMSGCEVNG--VLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPS 325
            S F   +   ++  + N    L    F        LD+   RI    S      E++  
Sbjct: 172 -SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI---HSLPSYGLENLKK 227

Query: 326 LKYLSLSG-STLGTNSSRILDQGLCPLAHLQELYIDNN 362
           L+  S      L T         L  L  L E  +   
Sbjct: 228 LRARSTYNLKKLPT---------LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 42/262 (16%), Positives = 77/262 (29%), Gaps = 47/262 (17%)

Query: 22  SLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSGTG 79
           S R     ++++   I     D  R+  EL     K+         G   L+ + +S   
Sbjct: 10  SNRVFLCQESKVT-EIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65

Query: 80  FKGTFDVREFDSFNNLEVLDMS-GNEIDNLVVPQGLERLSRLSKLKKLDLRGN------- 131
                +   F +   L  + +   N +  +           L  L+ L +          
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLLYI--NPEA--FQNLPNLQYLLISNTGIKHLPD 121

Query: 132 -------------LCNNSILSSVARLS------SLTSLHLSHNILQGSIDAKEFDSLSNL 172
                        + +N  + ++ R S          L L+ N +Q  I    F+     
Sbjct: 122 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLD 180

Query: 173 EELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNN 232
           E    ++N ++ +  +  + G      LD+S   I      L S     +L  L   S  
Sbjct: 181 ELNLSDNNNLEELP-NDVFHGASGPVILDISRTRIHS----LPS-YGLENLKKLRARSTY 234

Query: 233 FTATLTTTQELHNFTNLEYLTL 254
               L     L     L   +L
Sbjct: 235 ---NLKKLPTLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.4 bits (131), Expect = 8e-08
 Identities = 37/288 (12%), Positives = 70/288 (24%), Gaps = 66/288 (22%)

Query: 352 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 411
            +  EL      LR       +    L  +++S N +   I +    +L  + E+R+   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 412 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 471
                         + L                  +      L+ L +S+          
Sbjct: 90  --------------NNLLYI------------NPEAFQNLPNLQYLLISNTG-------- 115

Query: 472 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV-NDSL----AGPFRLPIHSHK 526
                             I   P+    ++ +   L +  N ++       F        
Sbjct: 116 ------------------IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV---GLSF 154

Query: 527 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 586
               L ++ N  Q  I     +            N L+      F        LD+S  +
Sbjct: 155 ESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213

Query: 587 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN 634
           +   +P +       L   S  N          +  L  L    L   
Sbjct: 214 IH-SLPSYGLENLKKLRARSTYNLK----KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 9e-04
 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 9/85 (10%)

Query: 874 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 933
                +K+   IP  +        L      L       FS    +E +++S N +   I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 934 PRQ----LVDLNTLAIFIVAYNNLS 954
                  L  L+ +   I   NNL 
Sbjct: 71  EADVFSNLPKLHEI--RIEKANNLL 93

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 54/313 (17%), Positives = 105/313 (33%), Gaps = 47/313 (15%)

Query: 146 SLTSLHLSHNILQGSIDAKEF----DSLSNLEELDINDNEIDNV---EVSRGYRGLRKLK 198
           S+    L  + +  + D K          +++E+ ++ N I       +S      + L+
Sbjct: 5   SIEGKSLKLDAI-TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 199 SLDLSGVGIRDGNK--------LLQSMGSFPSLNTLHLESNNFTAT--LTTTQELHNFTN 248
             + S +               LLQ++   P L+T+ L  N F  T        L   T 
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 249 LEYLTLDD------------SSLHISLLQSIGSIFPSLKNLSMSGC--EVNGVLS-GQGF 293
           LE+L L +             +L    +       P L+++       E   +    + F
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 294 PHFKSLEHLDMRFARIALNTSFLQIIGE---SMPSLKYLSLSGSTLGTNSSRILDQGLCP 350
              + L  + M    I        ++ E       LK L L  +T     S  L   L  
Sbjct: 184 QSHRLLHTVKMVQNGIR-PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 351 LAHLQELYIDNNDLRGSLPWCLANT------TSLRILDVSFNQLTG----SISSSPLVHL 400
             +L+EL +++  L       + +         L+ L + +N++      ++ +     +
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302

Query: 401 TSIEELRLSNNHF 413
             +  L L+ N F
Sbjct: 303 PDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 49/305 (16%), Positives = 92/305 (30%), Gaps = 51/305 (16%)

Query: 2   LDLSGNAFNN----NVLSSLARLSSLRSLYLSDNRL--EGSIDVKE-LDSLRDLEELDIG 54
             L  +A       +V + L    S++ + LS N +  E +  + E + S +DLE  +  
Sbjct: 9   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 68

Query: 55  GNKIDKFMVS------------KGLSKLKSLGLSGTGFKGTFDVREFDSF----NNLEVL 98
                +                    KL ++ LS   F G         F      LE L
Sbjct: 69  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTPLEHL 127

Query: 99  DMSGNEI---------DNLVVPQGLERLSRLSKLKKLDLRGNLCNN----SILSSVARLS 145
            +  N +           L      ++      L+ +    N   N        +     
Sbjct: 128 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187

Query: 146 SLTSLHLSHNILQ----GSIDAKEFDSLSNLEELDINDNEIDN---VEVSRGYRGLRKLK 198
            L ++ +  N ++      +  +       L+ LD+ DN   +     ++   +    L+
Sbjct: 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247

Query: 199 SLDLSGVGIRD-GNKLLQSM---GSFPSLNTLHLESNNFT---ATLTTTQELHNFTNLEY 251
            L L+   +   G   +           L TL L+ N           T       +L +
Sbjct: 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307

Query: 252 LTLDD 256
           L L+ 
Sbjct: 308 LELNG 312

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 55/292 (18%), Positives = 89/292 (30%), Gaps = 51/292 (17%)

Query: 2   LDLSGNAFNN----------NVLSSLARLSSLRSLYLSDNRLEGSIDVKE----LDSLRD 47
            + S                 +L +L +   L ++ LSDN   G    +     L     
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTP 123

Query: 48  LEELDIGGNKIDKF---MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNE 104
           LE L +  N +       +++ L +L     +                  L  +    N 
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA-------------PPLRSIICGRNR 170

Query: 105 IDNLVVPQGLERLSRLSKLKKLDLRGNL-----CNNSILSSVARLSSLTSLHLSHNIL-- 157
           ++N  + +  +       L  + +  N        + +L  +A    L  L L  N    
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230

Query: 158 QGSID-AKEFDSLSNLEELDINDNEIDN---VEVSRGYRGL--RKLKSLDLSGVGIRD-- 209
            GS   A    S  NL EL +ND  +       V   +  L    L++L L    I    
Sbjct: 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290

Query: 210 GNKLLQSMGS-FPSLNTLHLESNNFT---ATLTTTQE-LHNFTNLEYLTLDD 256
              L   +    P L  L L  N F+     +   +E        E   LDD
Sbjct: 291 VRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDD 342

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.3 bits (149), Expect = 7e-10
 Identities = 49/269 (18%), Positives = 85/269 (31%), Gaps = 57/269 (21%)

Query: 577 LQFLDLSNNKLTGE----IPDHLAMCCVNLEFLSLSNNSLK----------GHIFSRIFS 622
           ++ + LS N +  E    + +++A    +LE    S+                +   +  
Sbjct: 34  VKEIVLSGNTIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92

Query: 623 LRNLRWLLLEGNHF----VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 678
              L  + L  N F       +   LSK + L+ LYL+NN L  +    +   + LQ + 
Sbjct: 93  CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--RALQELA 150

Query: 679 MPKNHLEGPIPVEFCRLDSLQILDISDNNI--------SGSLPSCFYPLSIKQVHLSKNM 730
           + K     P          L+ +    N +        + +  S      +  V + +N 
Sbjct: 151 VNKKAKNAP---------PLRSIICGRNRLENGSMKEWAKTFQSH---RLLHTVKMVQNG 198

Query: 731 LHGQ-----LKEGTFFNCSSLVTLDLSYNYLNG----SIPDWIDGLSQLSHLNLAHNNLE 781
           +  +     L EG    C  L  LDL  N        ++   +     L  L L    L 
Sbjct: 199 IRPEGIEHLLLEG-LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

Query: 782 GE------VPIQLCRLNQLQLLDLSDNNL 804
                             LQ L L  N +
Sbjct: 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.6 bits (142), Expect = 5e-09
 Identities = 61/359 (16%), Positives = 118/359 (32%), Gaps = 93/359 (25%)

Query: 498 LENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSL 553
           L  +  ++ + L  +++    A      I S K L   + S+  F G +  EI + L  L
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLL 86

Query: 554 VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC---CVNLEFLSLSNN 610
           +               +      L  + LS+N       + L         LE L L NN
Sbjct: 87  L--------------QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132

Query: 611 SL-------------KGHIFSRIFSLRNLRWLLLEGNHF----VGEIPQSLSKCSSLKGL 653
            L             +  +  +  +   LR ++   N      + E  ++      L  +
Sbjct: 133 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192

Query: 654 YLNNNNLSGK-IPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI---- 708
            +  N +  + I   L   +GL +                     L++LD+ DN      
Sbjct: 193 KMVQNGIRPEGIEHLLL--EGLAY------------------CQELKVLDLQDNTFTHLG 232

Query: 709 ----SGSLPSCFYPLSIKQVHLSKNMLHGQ--------LKEGTFFNCSSLVTLDLSYNYL 756
               + +L S     +++++ L+  +L  +          +        L TL L YN +
Sbjct: 233 SSALAIALKSW---PNLRELGLNDCLLSARGAAAVVDAFSKLEN---IGLQTLRLQYNEI 286

Query: 757 NG----SIPDWI-DGLSQLSHLNLAHNNL--EGEVPIQLCRL----NQLQLLDLSDNNL 804
                 ++   I + +  L  L L  N    E +V  ++  +     + +L +L D   
Sbjct: 287 ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEE 345

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.7 bits (132), Expect = 9e-08
 Identities = 63/380 (16%), Positives = 117/380 (30%), Gaps = 106/380 (27%)

Query: 372 LANTTSLRILDVSFNQLTG---SISSSPLVHLTSIEELRLSNNHFRIPVSL---EPLFNH 425
           +A   S+    +  + +T        + L+   S++E+ LS N      +    E + + 
Sbjct: 1   MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 426 SKLKIFDAKNNEINGEINE--------SHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQH 477
             L+I +  +       +E          +L    +L ++ LS N               
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA--------- 110

Query: 478 ELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL-------------AGPFRLPIHS 524
                     + + +F    L  +T LE LYL N+ L                      +
Sbjct: 111 ---------QEPLIDF----LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKN 157

Query: 525 HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN 584
              LR +    N  +                 N SM         +F +   L  + +  
Sbjct: 158 APPLRSIICGRNRLE-----------------NGSMKEWA----KTFQSHRLLHTVKMVQ 196

Query: 585 NKLTGE-----IPDHLAMCCVNLEFLSLSNNSL--KG--HIFSRIFSLRNLRWLLLEGNH 635
           N +  E     + + LA C   L+ L L +N+    G   +   + S  NLR L L    
Sbjct: 197 NGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255

Query: 636 F----VGEIPQSLSKCS--SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP 689
                   +  + SK     L+ L L  N +             ++ +      ++  +P
Sbjct: 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD---------AVRTLK---TVIDEKMP 303

Query: 690 VEFCRLDSLQILDISDNNIS 709
                   L  L+++ N  S
Sbjct: 304 -------DLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 43/276 (15%), Positives = 86/276 (31%), Gaps = 52/276 (18%)

Query: 217 MGSFPSLNTLHLESNNFTATLTTT--QELHNFTNLEYLTLDDSSLHISLLQSIGSIF--- 271
           M  F S+    L+ +  T     +    L    +++ + L  +++     + +       
Sbjct: 1   MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 272 PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESM---PSLKY 328
             L+    S      V                            L+++ +++   P L  
Sbjct: 60  KDLEIAEFSDIFTGRVKD---------------------EIPEALRLLLQALLKCPKLHT 98

Query: 329 LSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL-------------RGSLPWCLANT 375
           + LS +  G  +   L   L     L+ LY+ NN L               ++     N 
Sbjct: 99  VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA 158

Query: 376 TSLRILDVSFNQLT--GSIS-SSPLVHLTSIEELRLSNNHFR----IPVSLEPLFNHSKL 428
             LR +    N+L        +        +  +++  N  R      + LE L    +L
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 429 KIFDAKNNEI--NGEINESHSLTPKFQLKSLSLSSN 462
           K+ D ++N     G    + +L     L+ L L+  
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 37/229 (16%), Positives = 71/229 (31%), Gaps = 47/229 (20%)

Query: 620 IFSLRNLRWLLLEGNHF----VGEIPQSLSKCSSLKGLYLNNNNLSGK----IPRWLGNL 671
            FS+       L+ +         +   L +  S+K + L+ N +  +    +   + + 
Sbjct: 3   RFSIEGKS---LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 672 KGLQHIVMPKNHL-----EGPIPVE-----FCRLDSLQILDISDNNISGSLPSCFYPL-- 719
           K L+              E P  +        +   L  + +SDN    +          
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 720 ---SIKQVHLSKN------------MLHGQLKEGTFFNCSSLVTLDLSYNYL-NGSIPDW 763
               ++ ++L  N             L          N   L ++    N L NGS+ +W
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 764 IDGLSQ---LSHLNLAHNNLEGE-VPIQLCRL----NQLQLLDLSDNNL 804
                    L  + +  N +  E +   L        +L++LDL DN  
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 52/392 (13%), Positives = 103/392 (26%), Gaps = 119/392 (30%)

Query: 577 LQFLDLSNNKLTGEIPDHLAMC---CVNLEFLSLSNNSLK-------GHIFSRIFSLRNL 626
           ++   L  + +T E    +        +++ + LS N++            +    L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 627 RWLLLEGNHFVGEIP-------QSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM 679
            +  +       EIP       Q+L KC  L  + L++N                + ++ 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG---------PTAQEPLI- 115

Query: 680 PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGT 739
             + L             L+ L + +N +    P     ++          L        
Sbjct: 116 --DFLSKHT--------PLEHLYLHNNGLG---PQAGAKIA--------RALQELAVNKK 154

Query: 740 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 799
             N   L ++    N L          + + +                      L  + +
Sbjct: 155 AKNAPPLRSIICGRNRLEN------GSMKEWAKT--------------FQSHRLLHTVKM 194

Query: 800 SDNNLH-----GLIPSCF-DNTTLHE---SYNNNSSPDKPFKTSFSISGPQGSVEKKILE 850
             N +       L+         L       N                   GS       
Sbjct: 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-------------F-THLGS------- 233

Query: 851 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL-------VGHIPPQIGNLTRIQTLNLSHN 903
                   +A A   +    L  L L+   L       V     ++ N+  +QTL L +N
Sbjct: 234 ------SALAIAL--KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYN 284

Query: 904 NLT--GTIPLTFS---NLRHIESLDLSYNKLS 930
            +       L       +  +  L+L+ N+ S
Sbjct: 285 EIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 82.7 bits (204), Expect = 3e-16
 Identities = 55/372 (14%), Positives = 108/372 (29%), Gaps = 32/372 (8%)

Query: 4   LSGNAFNNNVLSSLA-RLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGG-----NK 57
                 +   L ++A    SL S+ + D  +     V    +  +LEE   G        
Sbjct: 202 TEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGM 259

Query: 58  IDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERL 117
            +K+M      KL  LGLS  G      +  F     +  LD+       L        +
Sbjct: 260 PEKYMNLVFPRKLCRLGLSYMGPNEMPIL--FPFAAQIRKLDLLYA---LLETEDHCTLI 314

Query: 118 SRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKE-----------F 166
            +   L+ L+ R  + +  +         L  L +     +  ++ +E            
Sbjct: 315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374

Query: 167 DSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDG-------NKLLQSMGS 219
                LE + +  ++I N  +      L+ L    L  +   +        N +   +  
Sbjct: 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG 434

Query: 220 FPSLNTLHLESNNFTATLTTTQEL-HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 278
              L            T      +     N+ ++ L         L       P+L+ L 
Sbjct: 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE 494

Query: 279 MSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGT 338
           M GC  +            SL +L ++  R ++    L  +     +++ +         
Sbjct: 495 MRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVN 554

Query: 339 NSSRILDQGLCP 350
               I +     
Sbjct: 555 QQGEIREMEHPA 566

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 77.3 bits (190), Expect = 1e-14
 Identities = 61/427 (14%), Positives = 120/427 (28%), Gaps = 56/427 (13%)

Query: 17  LARLSSLRSLYLSDNRLEGSIDVKELD--------------SLRDLEELDIGGNKID--- 59
             R  +LRSL L         ++   +              +LR L+ +      +    
Sbjct: 69  SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD 128

Query: 60  -KFMVSKGLSKLKSLGLSGTGFKGTFDVREF-DSFNNLEVLDMSGNEIDNLVVPQGLERL 117
              +       L++L L       T  +         ++ L M  +           E  
Sbjct: 129 LDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188

Query: 118 SRLSKLKKLDLRGNLCNN----SILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLE 173
              + L+ L+             + +      SL S+ +    +        F + +NLE
Sbjct: 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LVGFFKAAANLE 246

Query: 174 ELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNF 233
           E        D + +   Y  L   + L   G+     N++         +  L L     
Sbjct: 247 EFCGGSLNED-IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDL-LYAL 304

Query: 234 TATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGF 293
             T      +    NLE L   +  +    L+ +      LK L +              
Sbjct: 305 LETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGA---------- 353

Query: 294 PHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 353
                 +   M      ++   L  + +    L+Y+++  S +   S   +   L  L  
Sbjct: 354 ------DEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCD 407

Query: 354 LQELYIDNNDLRGSLPWC------LANTTSLRILDVSFNQLTGSISSSPLVHLTS----I 403
            + + +D  +    LP        L     LR       Q  G ++   L ++      +
Sbjct: 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ--GGLTDLGLSYIGQYSPNV 465

Query: 404 EELRLSN 410
             + L  
Sbjct: 466 RWMLLGY 472

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 67.3 bits (164), Expect = 2e-11
 Identities = 76/540 (14%), Positives = 166/540 (30%), Gaps = 82/540 (15%)

Query: 116 RLSRLSKLKKLDLRGNLCNNSILSSVA-RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEE 174
           R  ++    +  +   LC  +    ++ R  +L SL L                 +    
Sbjct: 43  RWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKG-----------KPRAAMFNL 91

Query: 175 LDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT 234
           +  N        V+     LR+LKS+    + + D +    +      L TL L+  +  
Sbjct: 92  IPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF 151

Query: 235 ATLTTTQELHNFTNLEYLTLDDSSLH---ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQ 291
            T      + +   ++ L +++SS        L  +     SL+ L+    E   + S +
Sbjct: 152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI-SPK 210

Query: 292 GFPHF----KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQ- 346
                    +SL  + +    I     F +       +L+                    
Sbjct: 211 DLETIARNCRSLVSVKVGDFEILELVGFFKA----AANLEEFCGGSLNEDIGMPEKYMNL 266

Query: 347 -GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEE 405
                L  L   Y+  N++    P+       +R LD+ +  L      + +    ++E 
Sbjct: 267 VFPRKLCRLGLSYMGPNEMPILFPFA----AQIRKLDLLYALLETEDHCTLIQKCPNLEV 322

Query: 406 LRLSNNHFRIPVSLEPLFNH-SKLKIFD-AKNNEINGEINESHSLTPK---------FQL 454
           L   N        LE L  +  +LK     +  +  G  +E   ++ +          +L
Sbjct: 323 LETRNVIGD--RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380

Query: 455 KSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL 514
           + +++  +   + +      +   L +  L  +       +  L+N              
Sbjct: 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG------------- 427

Query: 515 AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNV 574
               R  +   K+LR                + D+          ++ +    P+     
Sbjct: 428 ---VRSLLIGCKKLRRFAFYLR------QGGLTDL---------GLSYIGQYSPN----- 464

Query: 575 IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEG 633
             ++++ L     + E     +  C NL+ L +          +     L +LR+L ++G
Sbjct: 465 --VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 61.9 bits (150), Expect = 7e-10
 Identities = 79/584 (13%), Positives = 159/584 (27%), Gaps = 128/584 (21%)

Query: 243 LHNFTNLEYLTL--------------DDSSLHISLLQSIGSIFPSLKNLSMSGCEV-NGV 287
              F NL  L L              +        +  I +    LK++      V +  
Sbjct: 69  SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD 128

Query: 288 LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQG 347
           L          LE L +        T  L  I      +K L +  S+      + L + 
Sbjct: 129 LDRLAKARADDLETLKLDKCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187

Query: 348 LCPLAHLQELYIDNNDLRG----SLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 403
                 L+ L     +        L     N  SL  + V   ++   +         ++
Sbjct: 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG--FFKAAANL 245

Query: 404 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNY 463
           EE    + +  I +  + +                        +L    +L  L LS   
Sbjct: 246 EEFCGGSLNEDIGMPEKYM------------------------NLVFPRKLCRLGLSYMG 281

Query: 464 GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND-SLAGPFRLPI 522
            + +  P       ++++ +L +  +  E    L++    LE L   N     G   L  
Sbjct: 282 PNEM--PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL-A 338

Query: 523 HSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDL 582
              K+L+ L +     +  +  E G +          + AL             L+++ +
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVS------QRGLIALAQGCQE-------LEYMAV 385

Query: 583 SNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ 642
             + +T E  + +     NL    L     +  I              L  ++ V  +  
Sbjct: 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERI------------TDLPLDNGVRSL-- 431

Query: 643 SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILD 702
            L  C  L+                L +  GL +I                   +++ + 
Sbjct: 432 -LIGCKKLRRFAFYLR------QGGLTD-LGLSYIGQ--------------YSPNVRWML 469

Query: 703 ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL-NGSIP 761
           +     S           +     S+              C +L  L++        +I 
Sbjct: 470 LGYVGESDE--------GLM--EFSRG-------------CPNLQKLEMRGCCFSERAIA 506

Query: 762 DWIDGLSQLSHLNLAHNNL----EGEVPIQLCRLNQLQLLDLSD 801
             +  L  L +L +         +  + +     N ++L+    
Sbjct: 507 AAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWN-IELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 55.7 bits (134), Expect = 6e-08
 Identities = 50/428 (11%), Positives = 123/428 (28%), Gaps = 49/428 (11%)

Query: 545 EIGDILPSLVYFNIS-MNALDGSIPS-SFGNVIFLQFLDLSN-NKLTGEIPDHLAMCCVN 601
           EI + L  L   +   M   D  +   +      L+ L L   +  T +    +   C  
Sbjct: 106 EISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRK 165

Query: 602 LEFLSLSNNSLKGHIFSRIFSL----RNLRWLLLEGNHFVGEIPQSL----SKCSSLKGL 653
           ++ L +  +S        +  L     +L  L      F    P+ L      C SL  +
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225

Query: 654 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFC------RLDSLQILDISDNN 707
            + +  +  ++  +      L+       + +  +P ++       +L  L +  +  N 
Sbjct: 226 KVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284

Query: 708 ISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGL 767
           +    P       I+++ L   +L  +        C +L  L+      +  +       
Sbjct: 285 MPILFPFAA---QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC 341

Query: 768 SQLSHLNLAHNNLEGEVPIQLCRLN------------QLQLLDLSDNN-----LHGLIPS 810
            QL  L +     E  +  +   ++            +L+ + +  ++     L  +   
Sbjct: 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401

Query: 811 CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEK-KILEIFEFTTK--NIAYAYQGRV 867
             +         +             +       +K +    +       ++  +Y G+ 
Sbjct: 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461

Query: 868 LSLLAGLDLSCNKL----VGHIPPQIGNLTRIQTLNLSHNNLT-GTIPLTFSNLRHIESL 922
              +  + L         +            +Q L +     +   I    + L  +  L
Sbjct: 462 SPNVRWMLLGYVGESDEGLMEF---SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518

Query: 923 DLSYNKLS 930
            +   + S
Sbjct: 519 WVQGYRAS 526

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 82.3 bits (203), Expect = 4e-16
 Identities = 88/535 (16%), Positives = 169/535 (31%), Gaps = 87/535 (16%)

Query: 164 KEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGV-GIRDGNKLLQSMG---- 218
           K +  +       +       V  +   R   K++S++L G     D N +    G    
Sbjct: 35  KSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVY 94

Query: 219 --------SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD-SSLHISLLQSIGS 269
                   S+  L  + L+    T          +F N + L L          L +I +
Sbjct: 95  PWIEAMSSSYTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAA 153

Query: 270 IFPSLKNLSMSGCEVNGVLSGQGFPHF----KSLEHLDMRFARIALNTSFLQIIGESMPS 325
              +LK L +   +V+ V SG    HF     SL  L++      ++ S L+ +    P+
Sbjct: 154 TCRNLKELDLRESDVDDV-SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212

Query: 326 LKYLSLSGSTLGTNSSRILDQGLCPLAHLQELY------IDNNDLRGSLPWCLANTTSLR 379
           LK L L+ +      + +L +   P   L+EL           D+   L   L+    LR
Sbjct: 213 LKSLKLNRAVPLEKLATLLQR--AP--QLEELGTGGYTAEVRPDVYSGLSVALSGCKELR 268

Query: 380 ILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEIN 439
            L   F     +   +     + +  L LS         L  L                 
Sbjct: 269 CLS-GFWDAVPAYLPAVYSVCSRLTTLNLSYATV-QSYDLVKLLCQCP------------ 314

Query: 440 GEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLE 499
                        +L+ L +     D+           +L+E  +   +     PN  L 
Sbjct: 315 -------------KLQRLWVLDYIEDA-GLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360

Query: 500 NNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNIS 559
               L  +                   +L  +            + I    P++  F + 
Sbjct: 361 EQG-LVSV--------------SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405

Query: 560 -----------MNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS 608
                      +  LD    +   +   L+ L LS   LT ++ +++      +E LS++
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVA 464

Query: 609 NNSLKGHIFSRIF-SLRNLRWLLLEGNHFVGE-IPQSLSKCSSLKGLYLNNNNLS 661
                      +     +LR L +    F  + +  + SK  +++ L++++ ++S
Sbjct: 465 FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 78.0 bits (192), Expect = 7e-15
 Identities = 70/415 (16%), Positives = 131/415 (31%), Gaps = 64/415 (15%)

Query: 2   LDLSGNAFNNNVLSSLAR-LSSLRSLYLSDNRLEGSIDVKEL-DSLRDLEELDIGGNKID 59
           + L      ++ L  +A+   + + L LS      +  +  +  + R+L+ELD+  + +D
Sbjct: 110 IRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD 169

Query: 60  KF------MVSKGLSKLKSLGLSGTGFKGTFD--------------------------VR 87
                         + L SL +S    + +F                             
Sbjct: 170 DVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT 229

Query: 88  EFDSFNNLEVLDMSG--NEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLS 145
                  LE L   G   E+   V       LS   +L+ L    +     + +  +  S
Sbjct: 230 LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS 289

Query: 146 SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGV 205
            LT+L+LS+  +Q     K       L+ L + D  I++  +       + L+ L +   
Sbjct: 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPS 348

Query: 206 GIRDGNK--------LLQSMGSFPSLNTLHLESNNFT-ATLTTTQELHNFTNLEYLTLDD 256
                          L+      P L ++       T A L T     N  N+    L  
Sbjct: 349 EPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI--ARNRPNMTRFRLCI 406

Query: 257 SSLHISL----------LQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 306
                              +I      L+ LS+SG   + V    G  + K +E L + F
Sbjct: 407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGT-YAKKMEMLSVAF 465

Query: 307 ARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDN 361
           A  +     +  +     SL+ L +     G  +          L  ++ L++ +
Sbjct: 466 AGDSDLG--MHHVLSGCDSLRKLEIRDCPFGDKALLAN---ASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 77.2 bits (190), Expect = 1e-14
 Identities = 76/552 (13%), Positives = 154/552 (27%), Gaps = 106/552 (19%)

Query: 116 RLSRLSKLKKLDLRGNLCNNSILSSVA-RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEE 174
               + +  +  +    C     ++V  R   + S+ L                 ++   
Sbjct: 36  SWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKG-----------KPHFADFNL 84

Query: 175 LDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT 234
           +           +         L+ + L  + + D             L  +        
Sbjct: 85  VPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD-----------CLELI-------- 125

Query: 235 ATLTTTQELHNFTNLEYLTLDD-SSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGF 293
                     +F N + L L          L +I +   +LK L +   +V+ V SG   
Sbjct: 126 --------AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV-SGHWL 176

Query: 294 PHF----KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLC 349
            HF     SL  L++      ++ S L+ +    P+LK L L+ +      + +L +   
Sbjct: 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR--A 234

Query: 350 PLAHLQELY------IDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 403
           P   L+EL           D+   L   L+    LR L   F     +   +     + +
Sbjct: 235 P--QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS-GFWDAVPAYLPAVYSVCSRL 291

Query: 404 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNY 463
             L LS         L  L                              +L+ L +    
Sbjct: 292 TTLNLSYATV-QSYDLVKLLCQCP-------------------------KLQRLWVLDYI 325

Query: 464 GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNW---------LLENNTKLEFL--YLVND 512
            D+           +L+E  +   +     PN          +     KLE +  +    
Sbjct: 326 EDA-GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM 384

Query: 513 SLAGPFRLPIHSHKRLRFLDVSNNNFQG--HIPVEIGDI--------LPSLVYFNISMNA 562
           + A        +   +    +     +   ++ +E  DI           L   ++S   
Sbjct: 385 TNAA-LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLL 443

Query: 563 LDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN-NSLKGHIFSRIF 621
            D            ++ L ++    +     H+   C +L  L + +       + +   
Sbjct: 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANAS 503

Query: 622 SLRNLRWLLLEG 633
            L  +R L +  
Sbjct: 504 KLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.1 bits (148), Expect = 1e-09
 Identities = 75/564 (13%), Positives = 157/564 (27%), Gaps = 110/564 (19%)

Query: 244 HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD 303
           +         +   + +     ++   FP ++++ + G            PHF     + 
Sbjct: 38  YEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGK-----------PHFADFNLVP 86

Query: 304 MRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLA----HLQELYI 359
             +        +++ +  S   L+ + L           + D  L  +A    + + L +
Sbjct: 87  DGWG--GYVYPWIEAMSSSYTWLEEIRLKRMV-------VTDDCLELIAKSFKNFKVLVL 137

Query: 360 DNNDL--RGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHL----TSIEELRLSNNHF 413
            + +      L    A   +L+ LD+  + +   +S   L H     TS+  L +S    
Sbjct: 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVD-DVSGHWLSHFPDTYTSLVSLNISCLAS 196

Query: 414 RI-PVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKF 472
            +   +LE L                               LKSL L+            
Sbjct: 197 EVSFSALERLVTRCP-------------------------NLKSLKLNRAVPLE-KLATL 230

Query: 473 LYHQHELKEAELSHIKMIGEFPNW-----LLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 527
           L    +L+E              +      L    +L  L    D++            R
Sbjct: 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290

Query: 528 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS---- 583
           L  L++S    Q +  V++    P L    +     D  +         L+ L +     
Sbjct: 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEP 350

Query: 584 -----NNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRI-FSLRNLRWLLLEGNHFV 637
                N  LT +    ++M C  LE +      +       I  +  N+           
Sbjct: 351 FVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF-------- 402

Query: 638 GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS 697
                 L         YL    L       + + K L+ + +     +            
Sbjct: 403 -----RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKK 457

Query: 698 LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY-NYL 756
           +++L ++    S           +  V                  C SL  L++    + 
Sbjct: 458 MEMLSVAFAGDSDL--------GMHHV---------------LSGCDSLRKLEIRDCPFG 494

Query: 757 NGSIPDWIDGLSQLSHLNLAHNNL 780
           + ++      L  +  L ++  ++
Sbjct: 495 DKALLANASKLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.7 bits (116), Expect = 8e-06
 Identities = 56/420 (13%), Positives = 116/420 (27%), Gaps = 73/420 (17%)

Query: 577 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN-NSLKGHIFSRIFS-LRNLRWLLLEGN 634
           L+ + L    +T +  + +A    N + L LS+         + I +  RNL+ L L  +
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES 166

Query: 635 HFVGEIPQSLS-------------------------------KCSSLKGLYLNNNNLSGK 663
                    LS                               +C +LK L LN      K
Sbjct: 167 DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK 226

Query: 664 IPRWLGNLKGLQHIVM------PKNHLEGPIPVEFCRLDSLQIL----DISDNNISGSLP 713
           +   L     L+ +         +  +   + V       L+ L    D     +     
Sbjct: 227 LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS 286

Query: 714 SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHL 773
            C     +  ++LS   +           C  L  L +     +  +         L  L
Sbjct: 287 VC---SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLREL 343

Query: 774 NLAHNNLEGEVPIQLC----------RLNQLQLL-----DLSDNNLHGLIPSCFDNTTLH 818
            +  +      P                 +L+ +      +++  L  +  +  + T   
Sbjct: 344 RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFR 403

Query: 819 ESYNNNSSPDKPFK--TSFSISG-PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLD 875
                  +PD               +   + + L +    T +  + Y G     +  L 
Sbjct: 404 LCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLT-DKVFEYIGTYAKKMEMLS 462

Query: 876 LSCNKL----VGHIPPQIGNLTRIQTLNLSH-NNLTGTIPLTFSNLRHIESLDLSYNKLS 930
           ++        + H+   +     ++ L +         +    S L  + SL +S   +S
Sbjct: 463 VAFAGDSDLGMHHV---LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 19/186 (10%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           LDL  N  ++    +  RL+ LR LYL+DN+L+ ++       L++LE L +  NK+   
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 62  --MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSR 119
              V   L  L  L L     K +   R FDS   L  L +  NE+ +L  P+G+    +
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSL--PKGV--FDK 155

Query: 120 LSKLKKLDLRGNLCNNSILSSV-----ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEE 174
           L+ LK+L L  N      L  V      +L+ L +L L +N L+  +    FDSL  L+ 
Sbjct: 156 LTSLKELRLYNNQ-----LKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKM 209

Query: 175 LDINDN 180
           L + +N
Sbjct: 210 LQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 69.6 bits (171), Expect = 5e-13
 Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 36/199 (18%)

Query: 92  FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-----ARLSS 146
             + + LD+  N++ +L  P       RL+KL+ L L  N      L ++       L +
Sbjct: 36  PADTKKLDLQSNKLSSL--PSKA--FHRLTKLRLLYLNDNK-----LQTLPAGIFKELKN 86

Query: 147 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 206
           L +L ++ N LQ ++    FD L NL EL ++ N++ ++   R +  L KL  L L    
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLP-PRVFDSLTKLTYLSLG--- 141

Query: 207 IRDGNKLLQSM--GSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHI 261
               N+ LQS+  G F    SL  L L +N               T L+ L LD++    
Sbjct: 142 ---YNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA--FDKLTELKTLKLDNNQ--- 192

Query: 262 SLLQSI-GSIFPSLKNLSM 279
             L+ +    F SL+ L M
Sbjct: 193 --LKRVPEGAFDSLEKLKM 209

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 8/173 (4%)

Query: 648 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDN 706
           +  K L L +N LS    +    L  L+ + +  N L+  +P   F  L +L+ L ++DN
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDN 95

Query: 707 NISGSLPSCF--YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 764
            +  +LP       +++ ++ L +N L   L    F + + L  L L YN L  S+P  +
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGV 152

Query: 765 -DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 816
            D L+ L  L L +N L+        +L +L+ L L +N L  +    FD+  
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 60/221 (27%), Positives = 89/221 (40%), Gaps = 49/221 (22%)

Query: 567 IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRN 625
           IP+        + LDL +NKL+  +P         L  L L++N L+  + + IF  L+N
Sbjct: 35  IPAD------TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 626 LRWLLLEGNHFVGEIPQSL-----SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 680
           L  L +  N       Q+L      +  +L  L L+ N L   +P  +            
Sbjct: 87  LETLWVTDNKL-----QALPIGVFDQLVNLAELRLDRNQLK-SLPPRV------------ 128

Query: 681 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEG 738
                      F  L  L  L +  N +  SLP   F  L S+K++ L  N L  ++ EG
Sbjct: 129 -----------FDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEG 175

Query: 739 TFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHN 778
            F   + L TL L  N L   +P+   D L +L  L L  N
Sbjct: 176 AFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 22/192 (11%)

Query: 549 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT---GEIPDHLAMCCVNLEFL 605
           I       ++  N L      +F  +  L+ L L++NKL      I   L     NLE L
Sbjct: 35  IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL----KNLETL 90

Query: 606 SLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYLNNNN 659
            +++N L+  +   +F  L NL  L L+ N       +SL        + L  L L  N 
Sbjct: 91  WVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQL-----KSLPPRVFDSLTKLTYLSLGYNE 144

Query: 660 LSGKIPRWL-GNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP 718
           L   +P+ +   L  L+ + +  N L+      F +L  L+ L + +N +       F  
Sbjct: 145 LQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203

Query: 719 L-SIKQVHLSKN 729
           L  +K + L +N
Sbjct: 204 LEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.1 bits (149), Expect = 3e-10
 Identities = 53/238 (22%), Positives = 79/238 (33%), Gaps = 61/238 (25%)

Query: 718 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 776
           P   K++ L  N L   L    F   + L  L L+ N L  ++P  I   L  L  L + 
Sbjct: 36  PADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93

Query: 777 HNNLEGEVPIQL-CRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSF 835
            N L+  +PI +  +L  L  L L  N L  L P  FD+                     
Sbjct: 94  DNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS--------------------- 131

Query: 836 SISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTR 894
                                           L+ L  L L  N+L   +P  +   LT 
Sbjct: 132 --------------------------------LTKLTYLSLGYNELQ-SLPKGVFDKLTS 158

Query: 895 IQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 952
           ++ L L +N L       F  L  +++L L  N+L  ++P    D       +    N
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 49/215 (22%), Positives = 76/215 (35%), Gaps = 61/215 (28%)

Query: 744 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDN 802
           +    LDL  N L+         L++L  L L  N L+  +P  +   L  L+ L ++DN
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 803 NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 862
            L  L    FD                                                 
Sbjct: 96  KLQALPIGVFDQ------------------------------------------------ 107

Query: 863 YQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIE 920
                L  LA L L  N+L   +PP++  +LT++  L+L +N L  ++P   F  L  ++
Sbjct: 108 -----LVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLK 160

Query: 921 SLDLSYNKLSGKIPRQLVD-LNTLAIFIVAYNNLS 954
            L L  N+L  ++P    D L  L    +  N L 
Sbjct: 161 ELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.7 bits (114), Expect = 9e-06
 Identities = 49/240 (20%), Positives = 82/240 (34%), Gaps = 66/240 (27%)

Query: 376 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 435
              + LD+  N+L+ S+ S     LT +  L L++N  +   +L          IF    
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ---TLPA-------GIFK--- 82

Query: 436 NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 495
                       L     L++L ++ N                        ++ +   P 
Sbjct: 83  -----------ELK---NLETLWVTDN-----------------------KLQAL---PI 102

Query: 496 WLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILP 551
            + +    L  L L  + L       F     S  +L +L +  N  Q  +P  + D L 
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRVF----DSLTKLTYLSLGYNELQ-SLPKGVFDKLT 157

Query: 552 SLVYFNISMNALDGSIPSS-FGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 610
           SL    +  N L   +P   F  +  L+ L L NN+L   +P+        L+ L L  N
Sbjct: 158 SLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 54/247 (21%), Positives = 88/247 (35%), Gaps = 73/247 (29%)

Query: 145 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 204
           +    L L  N L  S+ +K F  L+ L  L +NDN++  +     ++ L+ L++L ++ 
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAG-IFKELKNLETLWVT- 93

Query: 205 VGIRDGNKLLQSM--GSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL 259
                 +  LQ++  G F    +L  L L+ N   +         + T L YL+L  + L
Sbjct: 94  ------DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV--FDSLTKLTYLSLGYNEL 145

Query: 260 HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQII 319
                QS+    P             GV        F  L                    
Sbjct: 146 -----QSL----P------------KGV--------FDKL-------------------- 156

Query: 320 GESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLR 379
                SLK L L  + L        D+    L  L+ L +DNN L+        +   L+
Sbjct: 157 ----TSLKELRLYNNQLKRVPEGAFDK----LTELKTLKLDNNQLKRVPEGAFDSLEKLK 208

Query: 380 ILDVSFN 386
           +L +  N
Sbjct: 209 MLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 50/236 (21%), Positives = 80/236 (33%), Gaps = 81/236 (34%)

Query: 351 LAHLQELYIDNNDLRGSLP-WCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 409
           L  L+ LY+++N L+ +LP        +L  L V+ N+L  ++       L ++ ELRL 
Sbjct: 60  LTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD 117

Query: 410 NNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTF 469
            N  +   SL P       ++FD              SLT   +L  LSL  N       
Sbjct: 118 RNQLK---SLPP-------RVFD--------------SLT---KLTYLSLGYN------- 143

Query: 470 PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLR 529
                            ++ +   P  + +  T L+ L L                    
Sbjct: 144 ----------------ELQSL---PKGVFDKLTSLKELRL-------------------- 164

Query: 530 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 585
                NN  +  +P    D L  L    +  N L      +F ++  L+ L L  N
Sbjct: 165 ----YNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 38/205 (18%), Positives = 80/205 (39%), Gaps = 8/205 (3%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L L           + + L ++  +Y+S +     ++     +L  +  ++I   +   +
Sbjct: 36  LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95

Query: 62  MVS---KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLS 118
           +     K L  LK LG+  TG K   D+ +  S +   +L+++ N     +     + L 
Sbjct: 96  IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155

Query: 119 RLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSL-SNLEELDI 177
                  L L  N    S+       + L +++L+ N     ID   F  + S    LD+
Sbjct: 156 NE--TLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212

Query: 178 NDNEIDNVEVSRGYRGLRKLKSLDL 202
           +   +  +  S+G   L++L + + 
Sbjct: 213 SQTSVTALP-SKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 44/243 (18%), Positives = 74/243 (30%), Gaps = 53/243 (21%)

Query: 577 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 635
            Q L L    L   IP H      N+  + +S +     + S  F  L  +  + +    
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 636 FVGEIPQS-LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 694
            +  I    L +   LK L + N               GL+           P   +   
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNT--------------GLKMF---------PDLTKVYS 128

Query: 695 LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN-CSSLVTLDLSY 753
            D   IL+I+DN    S+P                          F   C+  +TL L  
Sbjct: 129 TDIFFILEITDNPYMTSIP-----------------------VNAFQGLCNETLTLKLYN 165

Query: 754 NYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR--LNQLQLLDLSDNNLHGLIPSC 811
           N    S+  +    ++L  + L  N     +         +   LLD+S  ++  L    
Sbjct: 166 NGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG 224

Query: 812 FDN 814
            ++
Sbjct: 225 LEH 227

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 34/247 (13%), Positives = 75/247 (30%), Gaps = 45/247 (18%)

Query: 693 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 752
           C     +   ++  +I   +PS   P S + + L +  L   +    F N  ++  + +S
Sbjct: 8   CECHQEEDFRVTCKDIQ-RIPSL--PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVS 63

Query: 753 YNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNNLHGL--- 807
            +     +       LS+++H+ + +      +     + L  L+ L + +  L      
Sbjct: 64  IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDL 123

Query: 808 --IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 865
             + S      L  + N                         +  I     + +      
Sbjct: 124 TKVYSTDIFFILEITDNP-----------------------YMTSIPVNAFQGLC----- 155

Query: 866 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP-LTFSNLRH-IESLD 923
              +    L L  N     +     N T++  + L+ N     I    F  +      LD
Sbjct: 156 ---NETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

Query: 924 LSYNKLS 930
           +S   ++
Sbjct: 212 VSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 17/148 (11%)

Query: 94  NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-ARLSSLTSLHL 152
           + + L +    +  +  P      S L  + ++ +  ++    + S     LS +T + +
Sbjct: 32  STQTLKLIETHLRTI--PSHA--FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87

Query: 153 SHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNK 212
            +      ID      L  L+ L I +  +                 L+++       N 
Sbjct: 88  RNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEIT------DNP 141

Query: 213 LLQSM--GSFPSLN----TLHLESNNFT 234
            + S+   +F  L     TL L +N FT
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFT 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 38/241 (15%), Positives = 84/241 (34%), Gaps = 49/241 (20%)

Query: 697 SLQILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 755
           S Q L + + ++       F  L  I ++++S ++   QL+  +F+N S +  +++    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 756 LNGSIP-DWIDGLSQLSHLNLAHNNLEGEVP--IQLCRLNQLQLLDLSDNN-LHGLIPSC 811
               I  D +  L  L  L + +  L+   P   ++   +   +L+++DN  +  +  + 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 812 FDN-----TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 865
           F        TL    N  +S     F                                  
Sbjct: 151 FQGLCNETLTLKLYNNGFTSVQGYAFN--------------------------------- 177

Query: 866 RVLSLLAGLDLSCNKLVGHIPPQI--GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 923
              + L  + L+ NK +  I      G  +    L++S  ++T        +L+ + + +
Sbjct: 178 --GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235

Query: 924 L 924
            
Sbjct: 236 T 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 33/196 (16%), Positives = 72/196 (36%), Gaps = 16/196 (8%)

Query: 490 IGEFPNWLLENNTKLEFLYL-VNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPV 544
           +   P+    N   +  +Y+ ++ +L    +  F    ++  ++  +++ N     +I  
Sbjct: 43  LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF----YNLSKVTHIEIRNTRNLTYIDP 98

Query: 545 EIGDILPSLVYFNISMNALDGSIP--SSFGNVIFLQFLDLSNNKLTGEIPDH-LAMCCVN 601
           +    LP L +  I    L    P  +   +      L++++N     IP +     C  
Sbjct: 99  DALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157

Query: 602 LEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSL--SKCSSLKGLYLNNNN 659
              L L NN     +    F+   L  + L  N ++  I +       S    L ++  +
Sbjct: 158 TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216

Query: 660 LSGKIPRWLGNLKGLQ 675
           ++    + L +LK L 
Sbjct: 217 VTALPSKGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 38/291 (13%), Positives = 73/291 (25%), Gaps = 82/291 (28%)

Query: 133 CNNSILSSVARL-SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY 191
                +  +  L  S  +L L    L+ +I +  F +L N+  + ++ +           
Sbjct: 18  VTCKDIQRIPSLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSID----------- 65

Query: 192 RGLRKLKSLDLSGVGIRDGNKLLQSMGSF---PSLNTLHLESNNFTATLTTTQELHNFTN 248
                L+ L+                 SF     +  + + +      +           
Sbjct: 66  ---VTLQQLE---------------SHSFYNLSKVTHIEIRNTRNLTYIDPDA----LKE 103

Query: 249 LEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFAR 308
           L                      P LK L +    +                 L++    
Sbjct: 104 L----------------------PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI---- 137

Query: 309 IALNTSFLQIIGESM-----PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI-DNN 362
              +  ++  I  +           L L       N    +         L  +Y+  N 
Sbjct: 138 --TDNPYMTSIPVNAFQGLCNETLTLKLYN-----NGFTSVQGYAFNGTKLDAVYLNKNK 190

Query: 363 DLRGSLPWCLAN-TTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 412
            L            +   +LDVS   +T ++ S  L HL     L   N  
Sbjct: 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKE---LIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 868 LSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIESLDLS 925
           L  ++ + +S +  +  +      NL+++  + + +      I       L  ++ L + 
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 926 YNKLSGKIP--RQLVDLNTLAIFIVAYNNLSGKIPE 959
              L    P   ++   +   I  +  N     IP 
Sbjct: 114 NTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 9/142 (6%)

Query: 324 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRILD 382
           PS + L L  + L      I       L ++  +Y+  +     L      N + +  ++
Sbjct: 31  PSTQTLKLIETHL----RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 383 VSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEI 442
           +   +    I    L  L  ++ L + N   ++   L  +++     I +  +N     I
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 443 NES--HSLTPKFQLKSLSLSSN 462
             +    L    +  +L L +N
Sbjct: 147 PVNAFQGLCN--ETLTLKLYNN 166

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 76.7 bits (189), Expect = 3e-15
 Identities = 53/208 (25%), Positives = 82/208 (39%), Gaps = 44/208 (21%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L LS N      L++L   + L  L L    L   + V    +L  L  LD+  N     
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHN----- 87

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
                  +L+SL L               +   L VLD+S N + +L  P G   L  L 
Sbjct: 88  -------QLQSLPLL------------GQTLPALTVLDVSFNRLTSL--PLGA--LRGLG 124

Query: 122 KLKKLDLRGNLCNNSILSSV-----ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELD 176
           +L++L L+GN      L ++          L  L L++N L   + A   + L NL+ L 
Sbjct: 125 ELQELYLKGNE-----LKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLL 178

Query: 177 INDNEIDNVEVSRGYRGLRKLKSLDLSG 204
           + +N +    + +G+ G   L    L G
Sbjct: 179 LQENSLYT--IPKGFFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 46/187 (24%), Positives = 70/187 (37%), Gaps = 18/187 (9%)

Query: 502 TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 561
                L+L  + L       +  + RL  L++        + V     LP L   ++S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHN 87

Query: 562 ALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSLKGHIF 617
            L  S+P     +  L  LD+S N+LT  +P      L      L+ L L  N LK  + 
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGL----GELQELYLKGNELK-TLP 140

Query: 618 SRIF-SLRNLRWLLLEGNHFVGEIPQSL-SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQ 675
             +      L  L L  N+   E+P  L +   +L  L L  N+L   IP+       L 
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLP 198

Query: 676 HIVMPKN 682
              +  N
Sbjct: 199 FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 49/213 (23%), Positives = 75/213 (35%), Gaps = 16/213 (7%)

Query: 570 SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRW 628
               V     ++     LT  +P  L     +   L LS N L              L  
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLY-TFSLATLMPYTRLTQ 59

Query: 629 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI 688
           L L+    + ++         L  L L++N L   +P     L  L  + +  N L   +
Sbjct: 60  LNLDRAE-LTKLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-L 115

Query: 689 PVE-FCRLDSLQILDISDNNISGSLPS-CFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSS 745
           P+     L  LQ L +  N +  +LP     P   ++++ L+ N L  +L  G      +
Sbjct: 116 PLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLEN 173

Query: 746 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN 778
           L TL L  N L  +IP    G   L    L  N
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 41/177 (23%), Positives = 63/177 (35%), Gaps = 32/177 (18%)

Query: 89  FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV----ARL 144
              +  L  L++   E+        L+    L  L  LDL  N      L S+      L
Sbjct: 51  LMPYTRLTQLNLDRAEL------TKLQVDGTLPVLGTLDLSHNQ-----LQSLPLLGQTL 99

Query: 145 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 204
            +LT L +S N L  S+       L  L+EL +  NE+  +          KL+ L L+ 
Sbjct: 100 PALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLA- 156

Query: 205 VGIRDGNKLLQSM--GSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD 256
                 N  L  +  G      +L+TL L+ N+     T  +       L +  L  
Sbjct: 157 -----NNN-LTELPAGLLNGLENLDTLLLQENSLY---TIPKGFFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 48/222 (21%), Positives = 80/222 (36%), Gaps = 32/222 (14%)

Query: 221 PSLNTLHLESNNFTA----TLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKN 276
            S   ++ +  N TA        T  LH   N            +       +       
Sbjct: 10  ASHLEVNCDKRNLTALPPDLPKDTTILHLSEN-----------LLYTFSL--ATLMPYTR 56

Query: 277 LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL 336
           L+    +   +   Q       L  LD+   ++      L ++G+++P+L  L +S + L
Sbjct: 57  LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL----QSLPLLGQTLPALTVLDVSFNRL 112

Query: 337 GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP-WCLANTTSLRILDVSFNQLTGSISSS 395
            +     L      L  LQELY+  N+L+ +LP   L  T  L  L ++ N LT  + + 
Sbjct: 113 TSLPLGALRG----LGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAG 166

Query: 396 PLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNN 436
            L  L +++ L L  N    IP   +  F    L       N
Sbjct: 167 LLNGLENLDTLLLQENSLYTIP---KGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 41/190 (21%), Positives = 68/190 (35%), Gaps = 20/190 (10%)

Query: 548 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP--DHLAMCCVNLEFL 605
           D+       ++S N L     ++      L  L+L   +LT ++     L      L  L
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTL----PVLGTL 82

Query: 606 SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYLNNNNL 660
            LS+N L+  +     +L  L  L +  N        SL          L+ LYL  N L
Sbjct: 83  DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL-----TSLPLGALRGLGELQELYLKGNEL 136

Query: 661 SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFYPL 719
               P  L     L+ + +  N+L   +P      L++L  L + +N++       F   
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH 195

Query: 720 SIKQVHLSKN 729
            +    L  N
Sbjct: 196 LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 52/216 (24%), Positives = 79/216 (36%), Gaps = 48/216 (22%)

Query: 744 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 803
                L LS N L       +   ++L+ LNL    L  ++ +    L  L  LDLS N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQ 88

Query: 804 LHGLIPSCFDN----TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKN 858
           L  L P         T L  S+N  +S P                               
Sbjct: 89  LQSL-PLLGQTLPALTVLDVSFNRLTSLPLGAL--------------------------- 120

Query: 859 IAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNL 916
                  R L  L  L L  N+L   +PP +     +++ L+L++NNLT  +P    + L
Sbjct: 121 -------RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL 171

Query: 917 RHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 952
            ++++L L  N L   IP+     + L  F   + N
Sbjct: 172 ENLDTLLLQENSLYT-IPKGFFGSHLLP-FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 7/122 (5%)

Query: 697 SLQILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKE-GTFFNCSSLVTLDLSYN 754
              IL +S+N +     +   P + + Q++L +     +L +         L TLDLS+N
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA----ELTKLQVDGTLPVLGTLDLSHN 87

Query: 755 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 814
            L  S+P     L  L+ L+++ N L       L  L +LQ L L  N L  L P     
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 815 TT 816
           T 
Sbjct: 147 TP 148

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 42/160 (26%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L+L         L     L  L +L LS N+L+ S+ +    +L  L  LD+  N++   
Sbjct: 60  LNLDRAELTK--LQVDGTLPVLGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSL 115

Query: 62  --MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSR 119
                +GL +L+ L L G   K T           LE L ++ N +  L  P GL  L+ 
Sbjct: 116 PLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTEL--PAGL--LNG 170

Query: 120 LSKLKKLDLRGNLCNNSILSSVAR----LSSLTSLHLSHN 155
           L  L  L L+ N      L ++ +       L    L  N
Sbjct: 171 LENLDTLLLQENS-----LYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 44/213 (20%), Positives = 70/213 (32%), Gaps = 51/213 (23%)

Query: 741 FNCS-SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 799
            +   S + ++     L  ++P  +      + L+L+ N L       L    +L  L+L
Sbjct: 6   VSKVASHLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 800 SDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT 855
               L  L            TL  S+N   S                             
Sbjct: 63  DRAELTKL--QVDGTLPVLGTLDLSHNQLQS----------------------------- 91

Query: 856 TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFS 914
              +    Q   L  L  LD+S N+L   +P      L  +Q L L  N L    P   +
Sbjct: 92  ---LPLLGQT--LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 915 NLRHIESLDLSYNKLSGKIP----RQLVDLNTL 943
               +E L L+ N L+ ++P      L +L+TL
Sbjct: 146 PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTL 177

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 49/239 (20%), Positives = 74/239 (30%), Gaps = 69/239 (28%)

Query: 352 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 411
                L++  N L       L   T L  L++   +LT          L  +  L LS+N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHN 87

Query: 412 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 471
             +   SL  L                        +L     L  L +S N         
Sbjct: 88  QLQ---SLPLLG----------------------QTLP---ALTVLDVSFN--------- 110

Query: 472 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL----AGPF-RLPIHSHK 526
                       L+ +      P   L    +L+ LYL  + L     G     P     
Sbjct: 111 -----------RLTSL------PLGALRGLGELQELYLKGNELKTLPPGLLTPTP----- 148

Query: 527 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 585
           +L  L ++NNN    +P  + + L +L    +  N+L  +IP  F     L F  L  N
Sbjct: 149 KLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.3 bits (123), Expect = 8e-07
 Identities = 46/248 (18%), Positives = 79/248 (31%), Gaps = 67/248 (27%)

Query: 133 CNNSILSSVAR--LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 190
           C+   L+++        T LHLS N+L  +         + L +L+++  E+  ++V   
Sbjct: 17  CDKRNLTALPPDLPKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQV--- 72

Query: 191 YRGLRKLKSLDLSGVGIRDGNKLLQSMGSF---PSLNTLHLESNNFTATLTTTQELHNFT 247
              L  L +LDLS       N+L          P+L  L +  N  T+       L    
Sbjct: 73  DGTLPVLGTLDLS------HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA--LRGLG 124

Query: 248 NLEYLTLDDSSLHISLLQSI-GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 306
            L+ L L  +      L+++   +                            LE L    
Sbjct: 125 ELQELYLKGNE-----LKTLPPGLLTPTPK----------------------LEKLS--- 154

Query: 307 ARIALNTSFLQIIGE----SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN 362
               L  + L  +       + +L  L L       NS   + +G      L   ++  N
Sbjct: 155 ----LANNNLTELPAGLLNGLENLDTLLLQ-----ENSLYTIPKGFFGSHLLPFAFLHGN 205

Query: 363 DLRGSLPW 370
                 PW
Sbjct: 206 ------PW 207

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 75.3 bits (185), Expect = 2e-14
 Identities = 42/181 (23%), Positives = 69/181 (38%), Gaps = 33/181 (18%)

Query: 92  FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVAR-----LSS 146
            +   +LD+S N +  L   +     +RL+ L  L L  N      L+ ++      + +
Sbjct: 38  PSYTALLDLSHNNLSRL---RAEWTPTRLTNLHSLLLSHNH-----LNFISSEAFVPVPN 89

Query: 147 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 206
           L  L LS N L  ++D   F  L  LE L + +N I  V+    +  + +L+ L LS   
Sbjct: 90  LRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLS--- 144

Query: 207 IRDGNKL-------LQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL 259
               N++       ++     P L  L L SN           L +   L     +   L
Sbjct: 145 ---QNQISRFPVELIKDGNKLPKLMLLDLSSNKL-----KKLPLTDLQKLPAWVKNGLYL 196

Query: 260 H 260
           H
Sbjct: 197 H 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.5 bits (183), Expect = 3e-14
 Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 16/177 (9%)

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRW-LGNLKGLQHIVMPKNHLEGPIPVE-FCRLD 696
            +PQSL   S    L L++NNLS     W    L  L  +++  NHL   I  E F  + 
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVP 88

Query: 697 SLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 754
           +L+ LD+S N++  +L    F  L +++ + L  N +   +    F + + L  L LS N
Sbjct: 89  NLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN 146

Query: 755 YLNGSIP----DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQL--LDLSDNNLH 805
            ++   P       + L +L  L+L+ N L+      L +L       L L +N L 
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.1 bits (182), Expect = 4e-14
 Identities = 38/196 (19%), Positives = 67/196 (34%), Gaps = 39/196 (19%)

Query: 46  RDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEI 105
                LD+  N + +              L                  NL  L +S N +
Sbjct: 39  SYTALLDLSHNNLSR--------------LRAEWT--------PTRLTNLHSLLLSHNHL 76

Query: 106 DNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-----ARLSSLTSLHLSHNILQGS 160
           + +           +  L+ LDL  N      L ++     + L +L  L L +N +   
Sbjct: 77  NFI--SSEA--FVPVPNLRYLDLSSNH-----LHTLDEFLFSDLQALEVLLLYNNHIV-V 126

Query: 161 IDAKEFDSLSNLEELDINDNEIDNVEVS--RGYRGLRKLKSLDLSGVGIRDGNKLLQSMG 218
           +D   F+ ++ L++L ++ N+I    V   +    L KL  LDLS   ++          
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186

Query: 219 SFPSLNTLHLESNNFT 234
                N L+L +N   
Sbjct: 187 PAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.1 bits (182), Expect = 4e-14
 Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 35/188 (18%)

Query: 2   LDLSGNAFNN-NVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 60
           LDLS N  +      +  RL++L SL LS N L   I  +    + +L  LD+  N    
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN---- 98

Query: 61  FMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRL 120
                    L +L               F     LEVL +  N I  +   +       +
Sbjct: 99  --------HLHTLD-EFL----------FSDLQALEVLLLYNNHIVVV--DRNA--FEDM 135

Query: 121 SKLKKLDLRGNLCNN---SILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNL--EEL 175
           ++L+KL L  N  +     ++    +L  L  L LS N L+  +   +   L       L
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGL 194

Query: 176 DINDNEID 183
            +++N ++
Sbjct: 195 YLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.0 bits (174), Expect = 4e-13
 Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 14/141 (9%)

Query: 697 SLQILDISDNNISGSLPS--CFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 753
              +LD+S NN+S  L +      L+ +  + LS N L+  +    F    +L  LDLS 
Sbjct: 40  YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 754 NYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 812
           N+L+ ++ +++   L  L  L L +N++          + QLQ L LS N +        
Sbjct: 98  NHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 813 DN-------TTLHESYNNNSS 826
            +         L  S N    
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKK 177

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 10/164 (6%)

Query: 577 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 635
              LDLS+N L+    +       NL  L LS+N L   I S  F  + NLR+L L  NH
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 636 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE---- 691
                    S   +L+ L L NN++         ++  LQ + + +N +    PVE    
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKD 158

Query: 692 FCRLDSLQILDISDNNISGSLPSCFYPLS---IKQVHLSKNMLH 732
             +L  L +LD+S N +     +    L       ++L  N L 
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 47/215 (21%), Positives = 71/215 (33%), Gaps = 61/215 (28%)

Query: 744 SSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSD 801
           S    LDLS+N L+    +W    L+ L  L L+HN+L   +  +    +  L+ LDLS 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 802 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 861
           N+LH L    F +                                               
Sbjct: 98  NHLHTLDEFLFSD----------------------------------------------- 110

Query: 862 AYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSN---LR 917
                 L  L  L L  N +V  +      ++ ++Q L LS N ++        +   L 
Sbjct: 111 ------LQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163

Query: 918 HIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 952
            +  LDLS NKL       L  L       +  +N
Sbjct: 164 KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 323 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRIL 381
           + +L  L LS + L   SS         + +L+ L + +N L  +L     ++  +L +L
Sbjct: 63  LTNLHSLLLSHNHLNFISSEAFVP----VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVL 117

Query: 382 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHF-RIPV-SLEPLFNHSKLKIFDAKNNEIN 439
            +  N +   +  +    +  +++L LS N   R PV  ++      KL + D  +N++ 
Sbjct: 118 LLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176

Query: 440 GEINESHSLTPKFQLKSLSLSSN 462
                     P +    L L +N
Sbjct: 177 KLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 48/241 (19%), Positives = 79/241 (32%), Gaps = 68/241 (28%)

Query: 748 TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLHG 806
            L  S   L  ++P  +   S  + L+L+HNNL          RL  L  L LS N+L+ 
Sbjct: 22  ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF 78

Query: 807 LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGR 866
           +    F                                                      
Sbjct: 79  ISSEAFVP---------------------------------------------------- 86

Query: 867 VLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLS 925
            +  L  LDLS N L   +   +  +L  ++ L L +N++       F ++  ++ L LS
Sbjct: 87  -VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144

Query: 926 YNKLSGKIPRQ----LVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY---DGNPFL 978
            N++S + P +       L  L +  ++ N L  K+P    Q       +      NP  
Sbjct: 145 QNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLE 202

Query: 979 C 979
           C
Sbjct: 203 C 203

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 39/175 (22%), Positives = 62/175 (35%), Gaps = 37/175 (21%)

Query: 494 PNWLLENNTKLEFLYLVNDSL----AGPFR-LPIHSHKRLRFLDVSNNNFQGHIPVEIGD 548
             W     T L  L L ++ L    +  F  +P      LR+LD+S+N+    +   +  
Sbjct: 56  AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-----NLRYLDLSSNHLH-TLDEFLFS 109

Query: 549 ILPSLVYFNISMNALDGSIPS-SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 607
            L +L    +  N +   +   +F ++  LQ L LS N+++   P               
Sbjct: 110 DLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPV-------------- 153

Query: 608 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLK--GLYLNNNNL 660
                   +      L  L  L L  N         L K  +    GLYL+NN L
Sbjct: 154 -------ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.4 bits (123), Expect = 9e-07
 Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 16/145 (11%)

Query: 324 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 383
                L LS + L    +   +     L +L  L + +N L            +LR LD+
Sbjct: 39  SYTALLDLSHNNLSRLRA---EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95

Query: 384 SFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP-LFNH-SKLKIFDAKNNEI--- 438
           S N L  ++       L ++E L L NNH      ++   F   ++L+      N+I   
Sbjct: 96  SSNHLH-TLDEFLFSDLQALEVLLLYNNHIV---VVDRNAFEDMAQLQKLYLSQNQISRF 151

Query: 439 -NGEINESHSLTPKFQLKSLSLSSN 462
               I + + L    +L  L LSSN
Sbjct: 152 PVELIKDGNKLP---KLMLLDLSSN 173

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 36/172 (20%), Positives = 62/172 (36%), Gaps = 17/172 (9%)

Query: 220 FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF---PSLKN 276
                 L L  NN +  L         TNL  L L  +  H++ + S    F   P+L+ 
Sbjct: 38  PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHN--HLNFISS--EAFVPVPNLRY 92

Query: 277 LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGESMPSLKYLSLSGS 334
           L +S   ++  L    F   ++LE L +    I +    +F     E M  L+ L LS +
Sbjct: 93  LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAF-----EDMAQLQKLYLSQN 146

Query: 335 TLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFN 386
            +      ++      L  L  L + +N L+      L    +     +  +
Sbjct: 147 QISRFPVELIK-DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 38/194 (19%), Positives = 74/194 (38%), Gaps = 43/194 (22%)

Query: 376 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP-LFNH-SKLKIFDA 433
           +   +LD+S N L+   +      LT++  L LS+NH      +    F     L+  D 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN---FISSEAFVPVPNLRYLDL 95

Query: 434 KNNEINGEINES--HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIG 491
            +N ++  ++E     L     L+ L L +N                       HI ++ 
Sbjct: 96  SSNHLH-TLDEFLFSDLQ---ALEVLLLYNN-----------------------HIVVV- 127

Query: 492 EFPNWLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIG 547
                  E+  +L+ LYL  + +        +   +   +L  LD+S+N  +  +P+   
Sbjct: 128 --DRNAFEDMAQLQKLYLSQNQISRFPVELIK-DGNKLPKLMLLDLSSNKLK-KLPLTDL 183

Query: 548 DILPSLVYFNISMN 561
             LP+ V   + ++
Sbjct: 184 QKLPAWVKNGLYLH 197

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 49/189 (25%), Positives = 93/189 (49%), Gaps = 21/189 (11%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
            +L   +  +    +   L+S+  +  +++ ++    V+ +  L ++  L +GGNK+   
Sbjct: 24  ANLKKKSVTD--AVTQNELNSIDQIIANNSDIKS---VQGIQYLPNVRYLALGGNKLHDI 78

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
              K L+ L  L L+G   + +     FD   NL+ L +  N++ +L  P G+    +L+
Sbjct: 79  SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSL--PDGV--FDKLT 133

Query: 122 KLKKLDLRGNLCNNSILSSVA-----RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELD 176
            L  L+L  N      L S+      +L++LT L LS+N LQ S+    FD L+ L++L 
Sbjct: 134 NLTYLNLAHNQ-----LQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLR 187

Query: 177 INDNEIDNV 185
           +  N++ +V
Sbjct: 188 LYQNQLKSV 196

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 24/181 (13%)

Query: 10  NNNVLSSLA---RLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK--FMVS 64
           NN+ + S+     L ++R L L  N+L   I    L  L +L  L + GN++      V 
Sbjct: 49  NNSDIKSVQGIQYLPNVRYLALGGNKLH-DISA--LKELTNLTYLILTGNQLQSLPNGVF 105

Query: 65  KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLK 124
             L+ LK L L     + +     FD   NL  L+++ N++ +L  P+G+    +L+ L 
Sbjct: 106 DKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSL--PKGV--FDKLTNLT 160

Query: 125 KLDLRGNLCNNSILSSVA-----RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND 179
           +LDL  N      L S+      +L+ L  L L  N L+ S+    FD L++L+ + ++D
Sbjct: 161 ELDLSYNQ-----LQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHD 214

Query: 180 N 180
           N
Sbjct: 215 N 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 40/202 (19%)

Query: 89  FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLT 148
            +  N+++ +  + ++I      + ++ +  L  ++ L L GN      +S++  L++LT
Sbjct: 37  QNELNSIDQIIANNSDI------KSVQGIQYLPNVRYLALGGN--KLHDISALKELTNLT 88

Query: 149 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIR 208
            L L+ N LQ S+    FD L+NL+EL + +N++ ++     +  L  L  L+L+     
Sbjct: 89  YLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLP-DGVFDKLTNLTYLNLA----- 141

Query: 209 DGNKLLQSM--GSFPSL---NTLHLESNNFTATLTTTQEL-----HNFTNLEYLTLDDSS 258
             N+ LQS+  G F  L     L L  N   +       L        T L+ L      
Sbjct: 142 -HNQ-LQSLPKGVFDKLTNLTELDLSYNQLQS-------LPEGVFDKLTQLKDL-----R 187

Query: 259 LHISLLQSI-GSIFPSLKNLSM 279
           L+ + L+S+   +F  L +L  
Sbjct: 188 LYQNQLKSVPDGVFDRLTSLQY 209

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 72/245 (29%)

Query: 544 VEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP--DHLAMCCVN 601
               + L S+     + + +  S+      +  +++L L  NKL  +I     L     N
Sbjct: 34  AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNKLH-DISALKEL----TN 86

Query: 602 LEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYL 655
           L +L L+ N L+  + + +F  L NL+ L+L  N       QSL      K ++L  L L
Sbjct: 87  LTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL-----QSLPDGVFDKLTNLTYLNL 140

Query: 656 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSC 715
            +N L   +P+ +                       F +L +L  LD+S N +  SLP  
Sbjct: 141 AHNQLQ-SLPKGV-----------------------FDKLTNLTELDLSYNQLQ-SLP-- 173

Query: 716 FYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLN 774
                                EG F   + L  L L  N L  S+PD + D L+ L ++ 
Sbjct: 174 ---------------------EGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIW 211

Query: 775 LAHNN 779
           L H+N
Sbjct: 212 L-HDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 9/174 (5%)

Query: 645 SKCS-SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 703
                      L   +++  + +    L  +  I+   + ++         L +++ L +
Sbjct: 15  DDAFAETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLAL 70

Query: 704 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 763
             N +   + +     ++  + L+ N L   L  G F   ++L  L L  N L  S+PD 
Sbjct: 71  GGNKLH-DISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPDG 127

Query: 764 I-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 816
           + D L+ L++LNLAHN L+        +L  L  LDLS N L  L    FD  T
Sbjct: 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 16/173 (9%)

Query: 648 SSLKGLYLNNNNLSGK--IPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 705
           +S+  +  NN+++     I      L  ++++ +  N L   I      L +L  L ++ 
Sbjct: 41  NSIDQIIANNSDIKSVQGIQY----LPNVRYLALGGNKLH-DISA-LKELTNLTYLILTG 94

Query: 706 NNISGSLPS-CFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 763
           N +  SLP+  F  L+ +K++ L +N L   L +G F   ++L  L+L++N L  S+P  
Sbjct: 95  NQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKG 151

Query: 764 I-DGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGLIPSCFDN 814
           + D L+ L+ L+L++N L+  +P  +  +L QL+ L L  N L  +    FD 
Sbjct: 152 VFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 22/143 (15%)

Query: 502 TKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 557
           T L +L L  + L     G F         L+ L +  N  Q  +P  + D L +L Y N
Sbjct: 85  TNLTYLILTGNQLQSLPNGVFDKL----TNLKELVLVENQLQS-LPDGVFDKLTNLTYLN 139

Query: 558 ISMNALDGSIPSS-FGNVIFLQFLDLSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSL 612
           ++ N L  S+P   F  +  L  LDLS N+L   +P    D L      L+ L L  N L
Sbjct: 140 LAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKL----TQLKDLRLYQNQL 193

Query: 613 KGHIFSRIF-SLRNLRWLLLEGN 634
           K  +   +F  L +L+++ L  N
Sbjct: 194 KS-VPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 16/144 (11%)

Query: 271 FPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIG--ESMPSLKY 328
              L ++       + + S QG  +  ++ +L        L  + L  I   + + +L Y
Sbjct: 37  QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLA-------LGGNKLHDISALKELTNLTY 89

Query: 329 LSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP-WCLANTTSLRILDVSFNQ 387
           L L+G+ L +  + + D+    L +L+EL +  N L+ SLP       T+L  L+++ NQ
Sbjct: 90  LILTGNQLQSLPNGVFDK----LTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQ 144

Query: 388 LTGSISSSPLVHLTSIEELRLSNN 411
           L  S+       LT++ EL LS N
Sbjct: 145 LQ-SLPKGVFDKLTNLTELDLSYN 167

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 50/232 (21%), Positives = 81/232 (34%), Gaps = 52/232 (22%)

Query: 711 SLPS-CFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 769
             P          + +L K  +       T    +S+  +  + + +  S+   I  L  
Sbjct: 12  IFPDDA--FAETIKANLKKKSV---TDAVTQNELNSIDQIIANNSDIK-SVQG-IQYLPN 64

Query: 770 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNS 825
           + +L L  N L  ++   L  L  L  L L+ N L  L    FD       L    N   
Sbjct: 65  VRYLALGGNKLH-DISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122

Query: 826 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI 885
           S             P G        +F+  T              L  L+L+ N+L   +
Sbjct: 123 SL------------PDG--------VFDKLTN-------------LTYLNLAHNQLQS-L 148

Query: 886 PPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIESLDLSYNKLSGKIPR 935
           P  +   LT +  L+LS+N L  ++P   F  L  ++ L L  N+L   +P 
Sbjct: 149 PKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS-VPD 198

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 71.3 bits (174), Expect = 8e-13
 Identities = 37/196 (18%), Positives = 74/196 (37%), Gaps = 17/196 (8%)

Query: 16  SLARLSSLRSLYLSDNRL---EGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKS 72
           S+ + + L+S   S   L   E       L  +  +  LD    + +       L  +  
Sbjct: 357 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 416

Query: 73  LGLSGTGFKGTFDVREFD----SFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDL 128
           +  +      +  + E       + ++ VL ++  ++  L        L +L  +  LDL
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL------CHLEQLLLVTHLDL 470

Query: 129 RGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVS 188
             N    ++  ++A L  L  L  S N L+ ++D     +L  L+EL + +N +      
Sbjct: 471 SHNRLR-ALPPALAALRCLEVLQASDNALE-NVD--GVANLPRLQELLLCNNRLQQSAAI 526

Query: 189 RGYRGLRKLKSLDLSG 204
           +      +L  L+L G
Sbjct: 527 QPLVSCPRLVLLNLQG 542

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.4 bits (169), Expect = 3e-12
 Identities = 50/335 (14%), Positives = 96/335 (28%), Gaps = 17/335 (5%)

Query: 622 SLRN-LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 680
           S     RWLL             +S+  +   +  +     G     L  +     + + 
Sbjct: 227 SAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVE 286

Query: 681 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 740
               +G        L  L    ++D           +  S  Q          +      
Sbjct: 287 WRTPDGRNRPSHVWLCDLPAASLNDQLPQ-HTFRVIWTGSDSQKECVLLKDRPECWCRDS 345

Query: 741 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 800
                L   +LS       +   ++   +L  L   +      + + +  L+ L     +
Sbjct: 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 404

Query: 801 DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 860
                 L           +   +    +               +  K L +      ++ 
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC----HLE 460

Query: 861 YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 920
                  L L+  LDLS N+L   +PP +  L  ++ L  S N L   +    +NL  ++
Sbjct: 461 Q------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQ 511

Query: 921 SLDLSYNKLSG-KIPRQLVDLNTLAIFIVAYNNLS 954
            L L  N+L      + LV    L +  +  N+L 
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.9 bits (165), Expect = 9e-12
 Identities = 40/193 (20%), Positives = 72/193 (37%), Gaps = 17/193 (8%)

Query: 14  LSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGL-SKLKS 72
           L+ +  + +L  L      L+    +K +D +R     D+    + +  V K   + ++ 
Sbjct: 386 LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV 445

Query: 73  LGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNL 132
           L L+         +   +    +  LD+S N +  L  P  L  L  L  L         
Sbjct: 446 LHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVL-------QA 493

Query: 133 CNNSI--LSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 190
            +N++  +  VA L  L  L L +N LQ S   +   S   L  L++  N +   E  + 
Sbjct: 494 SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553

Query: 191 Y--RGLRKLKSLD 201
                L  + S+ 
Sbjct: 554 RLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.5 bits (164), Expect = 1e-11
 Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 32/130 (24%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L L+        L  L +L  +  L LS NRL  ++    L +LR LE L    N ++  
Sbjct: 446 LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLR-ALP-PALAALRCLEVLQASDNALENV 501

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
               G++ L                        L+ L +  N +        ++ L    
Sbjct: 502 ---DGVANLP----------------------RLQELLLCNNRLQQS---AAIQPLVSCP 533

Query: 122 KLKKLDLRGN 131
           +L  L+L+GN
Sbjct: 534 RLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.9 bits (160), Expect = 4e-11
 Identities = 38/239 (15%), Positives = 83/239 (34%), Gaps = 19/239 (7%)

Query: 220 FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSM 279
             +   L     +   +     EL +   L+ L  ++    ++++         ++ L  
Sbjct: 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL-------MRALDP 397

Query: 280 SGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTN 339
              E   +           +          +       ++      ++ L L+   L   
Sbjct: 398 LLYEKETLQYFSTLKAVDPM-RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--- 453

Query: 340 SSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVH 399
            + +    L  L  +  L + +N LR +LP  LA    L +L  S N L    +   + +
Sbjct: 454 -TVL--CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVAN 506

Query: 400 LTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF-QLKSL 457
           L  ++EL L NN  +   +++PL +  +L + + + N +  E      L      + S+
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.5 bits (146), Expect = 2e-09
 Identities = 43/310 (13%), Positives = 88/310 (28%), Gaps = 34/310 (10%)

Query: 350 PLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 409
            +     +  +   L       L   + +  L +  ++   S+             + L 
Sbjct: 243 DVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLC 302

Query: 410 NNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF----QLKSLSLSSNYGD 465
           +          P      +        E     +             QL    LS     
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEK-- 360

Query: 466 SVTFPKFLYHQHELKEAE-------------LSHIKMIGEFPNWL--LENNTKLEFLYLV 510
           S      L    EL+E E             +  +  +      L        ++ +   
Sbjct: 361 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420

Query: 511 NDSLA-----GPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG 565
                         +    +  +R L +++ +      +   + L  + + ++S N L  
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV---LCHLEQLLLVTHLDLSHNRLR- 476

Query: 566 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH-IFSRIFSLR 624
           ++P +   +  L+ L  S+N L   +   +A     L+ L L NN L+       + S  
Sbjct: 477 ALPPALAALRCLEVLQASDNALE-NVD-GVA-NLPRLQELLLCNNRLQQSAAIQPLVSCP 533

Query: 625 NLRWLLLEGN 634
            L  L L+GN
Sbjct: 534 RLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.2 bits (145), Expect = 3e-09
 Identities = 54/329 (16%), Positives = 98/329 (29%), Gaps = 24/329 (7%)

Query: 86  VREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLS 145
           +   +  + L  + +S  E    +       L+  S++  L L  +    S+        
Sbjct: 236 LGRAEPHDVLCCVHVSREE--ACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGR 293

Query: 146 SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGV 205
           +  S     ++   S++ +       +     +  +   +   R     R   + +    
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFR 353

Query: 206 GIRDGNKLLQSMGSFPSLNTL-HLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLL 264
                 K         S   L  LE  N    LT    +     L Y             
Sbjct: 354 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS---- 409

Query: 265 QSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIG--ES 322
                   +LK +          L  +       L+        + L    L ++   E 
Sbjct: 410 --------TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQ 461

Query: 323 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILD 382
           +  + +L LS      N  R L   L  L  L+ L   +N L  ++   +AN   L+ L 
Sbjct: 462 LLLVTHLDLSH-----NRLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELL 514

Query: 383 VSFNQLTGSISSSPLVHLTSIEELRLSNN 411
           +  N+L  S +  PLV    +  L L  N
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.4 bits (117), Expect = 5e-06
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKI 58
           +L  S NA  N  +  +A L  L+ L L +NRL+ S  ++ L S   L  L++ GN +
Sbjct: 490 VLQASDNALEN--VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.1 bits (111), Expect = 2e-05
 Identities = 49/289 (16%), Positives = 87/289 (30%), Gaps = 48/289 (16%)

Query: 328 YLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQ 387
              L  ++L     +   + +   +  Q+  +   D         A    L   ++S  +
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEK 360

Query: 388 LTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHS 447
            T  +  S L     ++EL   N        L  +    +         E     +   +
Sbjct: 361 ST--VLQSELESCKELQELEPENKWC-----LLTIILLMRALDPLLYEKETLQYFSTLKA 413

Query: 448 LTPKFQLKSLSLSSNYGDSVTFPKFLYHQHE---LKEAELSHIKMIGEFPNWLLENNTKL 504
           + P        L S +    +  K  Y       L   +L+ +  + +            
Sbjct: 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL--------- 464

Query: 505 EFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALD 564
                                  +  LD+S+N  +  +P  +   L  L     S NAL+
Sbjct: 465 -----------------------VTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNALE 499

Query: 565 GSIPSSFGNVIFLQFLDLSNNKLTG-EIPDHLAMCCVNLEFLSLSNNSL 612
            ++     N+  LQ L L NN+L        L   C  L  L+L  NSL
Sbjct: 500 -NVDG-VANLPRLQELLLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.9 bits (108), Expect = 6e-05
 Identities = 48/338 (14%), Positives = 94/338 (27%), Gaps = 28/338 (8%)

Query: 232 NFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQ 291
            +   L    E H+     +++ +++ L +   + +         L M       V    
Sbjct: 230 FYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRT 289

Query: 292 GFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPL 351
                +            +LN    Q     + +    S     L  +      +     
Sbjct: 290 PDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSD-SQKECVLLKDRPECWCRDSATD 348

Query: 352 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR---L 408
             L    +                T L+    S  +L      +    LT I  +R    
Sbjct: 349 EQLFRCELSVEKS-----------TVLQSELESCKELQELEPENKWCLLTIILLMRALDP 397

Query: 409 SNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVT 468
                        L     ++     +      +  S        ++ L L+      +T
Sbjct: 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK---DLT 454

Query: 469 FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN---DSLAGPFRLPIHSH 525
               L     +   +LSH + +   P  L      LE L   +   +++ G     + + 
Sbjct: 455 VLCHLEQLLLVTHLDLSHNR-LRALPPAL-AALRCLEVLQASDNALENVDG-----VANL 507

Query: 526 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 563
            RL+ L + NN  Q    ++     P LV  N+  N+L
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 63.5 bits (155), Expect = 5e-12
 Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 14/152 (9%)

Query: 55  GNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGL 114
           G +I   + ++  S +K L L  +           D F  LE L      + ++      
Sbjct: 4   GRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI------ 57

Query: 115 ERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEE 174
             L +L+KLKKL+L  N  +  +     +  +LT L+LS N ++     +    L NL+ 
Sbjct: 58  ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117

Query: 175 LDINDNEIDNVEVSRGYRG-----LRKLKSLD 201
           LD+ + E+ N+     YR      L +L  LD
Sbjct: 118 LDLFNCEVTNLN---DYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 10/116 (8%)

Query: 91  SFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSI--LSSVARLSSLT 148
           + ++++ L +  +  +   +    +    L  L       +  N  +  ++++ +L+ L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFL-------STINVGLTSIANLPKLNKLK 67

Query: 149 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 204
            L LS N +         +   NL  L+++ N+I ++      + L  LKSLDL  
Sbjct: 68  KLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.4 bits (139), Expect = 8e-10
 Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 19  RLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGT 78
             S ++ L L ++R          D   +LE L      +        L+KLK L LS  
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDN 74

Query: 79  GFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLC 133
              G  +V   +   NL  L++SGN+I +L     +E L +L  LK LDL     
Sbjct: 75  RVSGGLEV-LAEKCPNLTHLNLSGNKIKDL---STIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 3/104 (2%)

Query: 580 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 639
           L L N++      + L      LEFLS  N  L     + +  L  L+ L L  N   G 
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELSDNRVSGG 79

Query: 640 IPQSLSKCSSLKGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKN 682
           +     KC +L  L L+ N +        L  L+ L+ + +   
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 12/141 (8%)

Query: 245 NFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM 304
             ++++ L LD+S  +   L+ +   F  L+ LS       G+ S    P    L+ L++
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTIN---VGLTSIANLPKLNKLKKLEL 71

Query: 305 RFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN-- 362
              R+   +  L+++ E  P+L +L+LSG+ +       ++  L  L +L+ L + N   
Sbjct: 72  SDNRV---SGGLEVLAEKCPNLTHLNLSGNKI--KDLSTIEP-LKKLENLKSLDLFNCEV 125

Query: 363 -DLRGSLPWCLANTTSLRILD 382
            +L             L  LD
Sbjct: 126 TNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 10/119 (8%)

Query: 168 SLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLH 227
           + S+++EL ++++  +  ++        +L+ L    VG+      + ++     L  L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS----IANLPKLNKLKKLE 70

Query: 228 LESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSI--FPSLKNLSMSGCEV 284
           L  N  +  L    E     NL +L L  S   I  L +I  +    +LK+L +  CEV
Sbjct: 71  LSDNRVSGGLEVLAE--KCPNLTHLNL--SGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 316 LQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANT 375
           L++   +   +K L L  S   +N  ++          L+ L   N  L  S+   L   
Sbjct: 9   LELRNRTPSDVKELVLDNS--RSNEGKLEG-LTDEFEELEFLSTINVGLT-SIA-NLPKL 63

Query: 376 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 435
             L+ L++S N+++            ++  L LS N  +   ++EPL     LK  D  N
Sbjct: 64  NKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

Query: 436 NEI 438
            E+
Sbjct: 123 CEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 8/103 (7%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L        +  +++L +L+ L+ L LSDNR+         +   +L  L++ GNKI   
Sbjct: 47  LSTINVGLTS--IANLPKLNKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDL 103

Query: 62  ---MVSKGLSKLKSLGLSGTGFKGTFDVRE--FDSFNNLEVLD 99
                 K L  LKSL L         D RE  F     L  LD
Sbjct: 104 STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 622 SLRNLRWLLLEGNHF-VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 680
           +  +++ L+L+ +    G++     +   L+ L   N  L+  I   L  L  L+ + + 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 681 KNHLEGPIPVEFCRLDSLQILDISDNNIS 709
            N + G + V   +  +L  L++S N I 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 718 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH 777
           P  +K++ L  +  +    EG       L  L      L  SI + +  L++L  L L+ 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSD 73

Query: 778 NNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 807
           N + G + +   +   L  L+LS N +  L
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 295 HFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHL 354
               ++ L +  +R   N   L+ + +    L++LS     L    + I    L  L  L
Sbjct: 15  TPSDVKELVLDNSRS--NEGKLEGLTDEFEELEFLSTINVGL----TSI--ANLPKLNKL 66

Query: 355 QELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 411
           ++L + +N + G L        +L  L++S N++    +  PL  L +++ L L N 
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 25/110 (22%), Positives = 36/110 (32%), Gaps = 8/110 (7%)

Query: 524 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 583
             + L FL   N        +     L  L    +S N + G +         L  L+LS
Sbjct: 40  EFEELEFLSTINVGLTS---IANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96

Query: 584 NNKLTG-EIPDHLAMCCVNLEFLSLSNNSLKGHIFSR---IFSLRNLRWL 629
            NK+      + L     NL+ L L N  +      R      L  L +L
Sbjct: 97  GNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 27/110 (24%)

Query: 694 RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 753
             + L+ L   +  ++          SI  +                   + L  L+LS 
Sbjct: 40  EFEELEFLSTINVGLT----------SIANLP----------------KLNKLKKLELSD 73

Query: 754 NYLNGSIPDWIDGLSQLSHLNLAHNNLEG-EVPIQLCRLNQLQLLDLSDN 802
           N ++G +    +    L+HLNL+ N ++       L +L  L+ LDL + 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 64.0 bits (156), Expect = 6e-12
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 14/151 (9%)

Query: 56  NKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLE 115
            +I   + ++  + ++ L L                F NLE L +    + ++       
Sbjct: 12  RRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV------S 65

Query: 116 RLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEEL 175
            L +L KLKKL+L  N     +     +L +LT L+LS N L+     +    L  L+ L
Sbjct: 66  NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125

Query: 176 DINDNEIDNVEVSRGYRG-----LRKLKSLD 201
           D+ + E+ N+     YR      L +L  LD
Sbjct: 126 DLFNCEVTNLN---DYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 7/135 (5%)

Query: 19  RLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGT 78
             +++R L L + +              +LE L +    +        L KLK L LS  
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSEN 81

Query: 79  GFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSI- 137
              G  D+   +   NL  L++SGN++ ++     LE L +L  LK LDL      N   
Sbjct: 82  RIFGGLDM-LAEKLPNLTHLNLSGNKLKDI---STLEPLKKLECLKSLDLFNCEVTNLND 137

Query: 138 --LSSVARLSSLTSL 150
              S    L  LT L
Sbjct: 138 YRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 38/134 (28%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 580 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 639
           L L N K      + L    VNLEFLSL N  L     S +  L  L+ L L  N   G 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSENRIFGG 86

Query: 640 IPQSLSKCSSLKGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKN---HLEGPIPVEFCRL 695
           +     K  +L  L L+ N L        L  L+ L+ + +      +L       F  L
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146

Query: 696 DSLQILDISDNNIS 709
             L  LD  D    
Sbjct: 147 PQLTYLDGYDREDQ 160

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.1 bits (125), Expect = 8e-08
 Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 12/141 (8%)

Query: 245 NFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM 304
               +  L LD+   +   ++ + + F +L+ LS+    +  V      P    L+ L++
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLEL 78

Query: 305 RFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN-- 362
              RI      L ++ E +P+L +L+LSG+ L       L+  L  L  L+ L + N   
Sbjct: 79  SENRI---FGGLDMLAEKLPNLTHLNLSGNKL--KDISTLEP-LKKLECLKSLDLFNCEV 132

Query: 363 -DLRGSLPWCLANTTSLRILD 382
            +L             L  LD
Sbjct: 133 TNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 10/119 (8%)

Query: 168 SLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLH 227
           + + + EL +++ + ++ ++         L+ L L  VG+      + ++   P L  L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS----VSNLPKLPKLKKLE 77

Query: 228 LESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSI--FPSLKNLSMSGCEV 284
           L  N     L    E     NL +L L  S   +  + ++  +     LK+L +  CEV
Sbjct: 78  LSENRIFGGLDMLAE--KLPNLTHLNL--SGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 717 YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 776
            P +++++ L     +    EG      +L  L L    L  S+ + +  L +L  L L+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELS 79

Query: 777 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 807
            N + G + +   +L  L  L+LS N L  +
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L L      +  +S+L +L  L+ L LS+NR+         + L +L  L++ GNK+   
Sbjct: 54  LSLINVGLIS--VSNLPKLPKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDI 110

Query: 62  MVSKGLSKLKSL 73
              + L KL+ L
Sbjct: 111 STLEPLKKLECL 122

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 16/127 (12%)

Query: 319 IGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSL 378
           +     +L++LSL    L      +    L  L  L++L +  N + G L        +L
Sbjct: 44  LTAEFVNLEFLSLINVGL----ISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 379 RILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP------LFNHSKLKIFD 432
             L++S N+L    +  PL  L  ++ L L N      V+              +L   D
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNC----EVTNLNDYRESVFKLLPQLTYLD 153

Query: 433 AKNNEIN 439
             + E  
Sbjct: 154 GYDREDQ 160

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 8/106 (7%)

Query: 528 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 587
           L FL + N        V     LP L    +S N + G +      +  L  L+LS NKL
Sbjct: 51  LEFLSLINVGLIS---VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 588 TG-EIPDHLAMCCVNLEFLSLSNN---SLKGHIFSRIFSLRNLRWL 629
                 + L      L+ L L N    +L  +  S    L  L +L
Sbjct: 108 KDISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 874 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 930
           L L    L+  +   +  L +++ L LS N + G + +    L ++  L+LS NKL 
Sbjct: 54  LSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 13/154 (8%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDS-LRDLEELDIGGNKID 59
           M+ L+         +        R L L   ++     ++ L + L   + +D   N+I 
Sbjct: 1   MVKLTAELIEQ--AAQYTNAVRDRELDLRGYKIP---VIENLGATLDQFDAIDFSDNEIR 55

Query: 60  KFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSR 119
           K      L +LK+L ++        +     +  +L  L ++ N +  L     L+ L+ 
Sbjct: 56  KLDGFPLLRRLKTLLVNNNRICRIGEG-LDQALPDLTELILTNNSLVEL---GDLDPLAS 111

Query: 120 LSKLKKLDLRGNLCNNSI---LSSVARLSSLTSL 150
           L  L  L +  N   N     L  + ++  +  L
Sbjct: 112 LKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 61.6 bits (150), Expect = 5e-11
 Identities = 41/183 (22%), Positives = 65/183 (35%), Gaps = 41/183 (22%)

Query: 28  LSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVR 87
           L+   +E      +  +     ELD+ G KI           +++LG             
Sbjct: 4   LTAELIE---QAAQYTNAVRDRELDLRGYKI---------PVIENLG------------- 38

Query: 88  EFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSL 147
              + +  + +D S NEI  L      +    L +LK L +  N            L  L
Sbjct: 39  --ATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 148 TSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRG-----LRKLKSLDL 202
           T L L++N L    D     SL +L  L I  N + N +    YR      + +++ LD 
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK---HYRLYVIYKVPQVRVLDF 147

Query: 203 SGV 205
             V
Sbjct: 148 QKV 150

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 5/115 (4%)

Query: 569 SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 628
           + + N +  + LDL   K+   I ++L       + +  S+N ++         LR L+ 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKT 68

Query: 629 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKN 682
           LL+  N               L  L L NN+L        L +LK L ++ + +N
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 32/142 (22%)

Query: 115 ERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEE 174
            + +   + ++LDLRG            ++  + +L                 +L   + 
Sbjct: 13  AQYTNAVRDRELDLRGY-----------KIPVIENLG---------------ATLDQFDA 46

Query: 175 LDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT 234
           +D +DNEI  ++   G+  LR+LK+L ++   I    + L    + P L  L L +NN  
Sbjct: 47  IDFSDNEIRKLD---GFPLLRRLKTLLVNNNRICRIGEGLDQ--ALPDLTELIL-TNNSL 100

Query: 235 ATLTTTQELHNFTNLEYLTLDD 256
             L     L +  +L YL +  
Sbjct: 101 VELGDLDPLASLKSLTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 14/149 (9%)

Query: 237 LTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHF 296
           +    +  N      L L      I +++++G+       +  S    N +    GFP  
Sbjct: 9   IEQAAQYTNAVRDRELDLR--GYKIPVIENLGATLDQFDAIDFSD---NEIRKLDGFPLL 63

Query: 297 KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQE 356
           + L+ L +   RI       + + +++P L  L L+ ++L       LD  L  L  L  
Sbjct: 64  RRLKTLLVNNNRI---CRIGEGLDQALPDLTELILTNNSL--VELGDLDP-LASLKSLTY 117

Query: 357 LYIDNN---DLRGSLPWCLANTTSLRILD 382
           L I  N   + +    + +     +R+LD
Sbjct: 118 LCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 8/118 (6%)

Query: 321 ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRI 380
            +    + L L G         +++     L     +   +N++R  L         L+ 
Sbjct: 16  TNAVRDRELDLRG-----YKIPVIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKT 68

Query: 381 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI 438
           L V+ N++   I       L  + EL L+NN       L+PL +   L       N +
Sbjct: 69  LLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 17/108 (15%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 700 ILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 759
           ++ ++   I          +  +++ L    +   + E           +D S N +   
Sbjct: 1   MVKLTAELIE-QAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR-K 56

Query: 760 IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 807
           +  +   L +L  L + +N +          L  L  L L++N+L  L
Sbjct: 57  LDGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 622 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 681
           +    R L L G   +  I    +       +  ++N +  K+      L+ L+ +++  
Sbjct: 17  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNN 73

Query: 682 NHLEGPIPVEFCRLDSLQILDISDNNIS 709
           N +          L  L  L +++N++ 
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 498 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 557
             N  +   L L    +     L   +  +   +D S+N  +    ++   +L  L    
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLL 70

Query: 558 ISMNALDGSIPSSFGNVIFLQFLDLSNNKLT--GEIPDHLAMCCVNLEFLSLSNN---SL 612
           ++ N +          +  L  L L+NN L   G++ D LA    +L +L +  N   + 
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLA-SLKSLTYLCILRNPVTNK 128

Query: 613 KGHIFSRIFSLRNLRWL 629
           K +    I+ +  +R L
Sbjct: 129 KHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 865 GRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 924
           G  L     +D S N++          L R++TL +++N +          L  +  L L
Sbjct: 38  GATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95

Query: 925 SYNKLS 930
           + N L 
Sbjct: 96  TNNSLV 101

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 16/121 (13%)

Query: 89  FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-----AR 143
           F  +  L  +D+S N+I  L           L  L  L L GN      ++ +       
Sbjct: 52  FSPYKKLRRIDLSNNQISEL--APDA--FQGLRSLNSLVLYGNK-----ITELPKSLFEG 102

Query: 144 LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLS 203
           L SL  L L+ N +   +    F  L NL  L + DN++  +     +  LR ++++ L+
Sbjct: 103 LFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTI-AKGTFSPLRAIQTMHLA 160

Query: 204 G 204
            
Sbjct: 161 Q 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 39/165 (23%)

Query: 21  SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGF 80
            ++  + L  N ++  I        + L  +D+  N+I +  ++                
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISE--LAPDA------------- 75

Query: 81  KGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSS 140
                   F    +L  L + GN+I  L  P+ L     L  L+ L L  N      ++ 
Sbjct: 76  --------FQGLRSLNSLVLYGNKITEL--PKSL--FEGLFSLQLLLLNANK-----INC 118

Query: 141 VAR-----LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 180
           +       L +L  L L  N LQ +I    F  L  ++ + +  N
Sbjct: 119 LRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.0 bits (151), Expect = 8e-11
 Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 28/150 (18%)

Query: 94  NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVA-----RLSSLT 148
            +  + +  N I  +  P G    S   KL+++DL  N      +S +A      L SL 
Sbjct: 33  TITEIRLEQNTIKVI--PPGA--FSPYKKLRRIDLSNNQ-----ISELAPDAFQGLRSLN 83

Query: 149 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG-YRGLRKLKSLDLSGVGI 207
           SL L  N +   +    F+ L +L+ L +N N+I+ +      ++ L  L  L L     
Sbjct: 84  SLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLR--VDAFQDLHNLNLLSLYD--- 137

Query: 208 RDGNKLLQ-SMGSF---PSLNTLHLESNNF 233
              NKL   + G+F    ++ T+HL  N F
Sbjct: 138 ---NKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 7/114 (6%)

Query: 718 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 776
           P +I ++ L +N +   +  G F     L  +DLS N ++  +      GL  L+ L L 
Sbjct: 31  PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY 88

Query: 777 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSS 826
            N +          L  LQLL L+ N ++ L    F +      L    N   +
Sbjct: 89  GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 19/146 (13%)

Query: 672 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS-IKQVHLSKNM 730
           KGL  I  P N     +P       ++  + +  N I    P  F P   ++++ LS N 
Sbjct: 21  KGLTEI--PTN-----LPE------TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ 67

Query: 731 LHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQL- 788
           +  +L    F    SL +L L  N +   +P  + +GL  L  L L  N +   + +   
Sbjct: 68  IS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAF 124

Query: 789 CRLNQLQLLDLSDNNLHGLIPSCFDN 814
             L+ L LL L DN L  +    F  
Sbjct: 125 QDLHNLNLLSLYDNKLQTIAKGTFSP 150

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 28/154 (18%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           + L  N        + +    LR + LS+N++   +       LR L  L + GN     
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN----- 90

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
                  K+  L               F+   +L++L ++ N+I+ L           L 
Sbjct: 91  -------KITEL-----------PKSLFEGLFSLQLLLLNANKINCL--RVDA--FQDLH 128

Query: 122 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHN 155
            L  L L  N        + + L ++ ++HL+ N
Sbjct: 129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 5/131 (3%)

Query: 578 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHF 636
             + L  N +   IP         L  + LSNN +   +    F  LR+L  L+L GN  
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92

Query: 637 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWL-GNLKGLQHIVMPKNHLEGPIPVEFCRL 695
                       SL+ L LN N ++  +      +L  L  + +  N L+      F  L
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 696 DSLQILDISDN 706
            ++Q + ++ N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.2 bits (136), Expect = 9e-09
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 8/143 (5%)

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDS 697
           EIP +L    ++  + L  N +    P      K L+ I +  N +   +  + F  L S
Sbjct: 25  EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRS 81

Query: 698 LQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 755
           L  L +  N I+  LP   F  L S++ + L+ N ++  L+   F +  +L  L L  N 
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNK 139

Query: 756 LNGSIPDWIDGLSQLSHLNLAHN 778
           L          L  +  ++LA N
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 35/187 (18%), Positives = 58/187 (31%), Gaps = 59/187 (31%)

Query: 744 SSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSD 801
            ++  + L  N +   IP        +L  ++L++N +  E+       L  L  L L  
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89

Query: 802 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 861
           N +  L  S F+                                                
Sbjct: 90  NKITELPKSLFEG----------------------------------------------- 102

Query: 862 AYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 920
                 L  L  L L+ NK+   +      +L  +  L+L  N L      TFS LR I+
Sbjct: 103 ------LFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155

Query: 921 SLDLSYN 927
           ++ L+ N
Sbjct: 156 TMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 7/94 (7%)

Query: 322 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRI 380
               L+ + LS + +   +          L  L  L +  N +   LP        SL++
Sbjct: 54  PYKKLRRIDLSNNQISELAPDAFQG----LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQL 108

Query: 381 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 414
           L ++ N++   +       L ++  L L +N  +
Sbjct: 109 LLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 14/120 (11%)

Query: 523 HSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSS-FGNVIFLQFLD 581
             +K+LR +D+SNN     +  +    L SL    +  N +   +P S F  +  LQ L 
Sbjct: 53  SPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110

Query: 582 LSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHF 636
           L+ NK+   +       L     NL  LSL +N L+  I    F  LR ++ + L  N F
Sbjct: 111 LNANKIN-CLRVDAFQDLH----NLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 26/142 (18%)

Query: 145 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 204
            ++T + L  N ++  I    F     L  +D+++N+I  +     ++GLR L SL L  
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLY- 88

Query: 205 VGIRDGNKLLQSM--GSF---PSLNTLHLESNNFTATLTTTQELHN--FTNLEYLTLDDS 257
                GNK +  +    F    SL  L L +N           L    F +L  L L   
Sbjct: 89  -----GNK-ITELPKSLFEGLFSLQLLLLNANKI-------NCLRVDAFQDLHNLNL--L 133

Query: 258 SLHISLLQSI-GSIFPSLKNLS 278
           SL+ + LQ+I    F  L+ + 
Sbjct: 134 SLYDNKLQTIAKGTFSPLRAIQ 155

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 14/134 (10%)

Query: 531 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPS-SFGNVIFLQFLDLSNNKLTG 589
           + +  N  +  IP         L   ++S N +   +   +F  +  L  L L  NK+T 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 590 EIP----DHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHFVGEIPQSL 644
           E+P    + L     +L+ L L+ N +   +    F  L NL  L L  N        + 
Sbjct: 94  ELPKSLFEGL----FSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 645 SKCSSLKGLYLNNN 658
           S   +++ ++L  N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 35/136 (25%)

Query: 10  NNNVLSSLA-----RLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS 64
           +NN +S LA      L SL SL L  N++   +     + L  L+ L +  N        
Sbjct: 64  SNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNAN-------- 114

Query: 65  KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLK 124
               K+  L               F   +NL +L +  N++    + +G    S L  ++
Sbjct: 115 ----KINCLR------VDA-----FQDLHNLNLLSLYDNKLQT--IAKGT--FSPLRAIQ 155

Query: 125 KLDLRGNL--CNNSIL 138
            + L  N   C+  + 
Sbjct: 156 TMHLAQNPFICDCHLK 171

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 868 LSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSY 926
           L  L  L L  NK+   +P  +   L  +Q L L+ N +       F +L ++  L L  
Sbjct: 79  LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137

Query: 927 NKLS 930
           NKL 
Sbjct: 138 NKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 16/130 (12%)

Query: 288 LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE----SMPSLKYLSLSGSTLGTNSSRI 343
           +    F  +K L  +D       L+ + +  +       + SL  L L G+ +      +
Sbjct: 47  IPPGAFSPYKKLRRID-------LSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99

Query: 344 LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 403
            +     L  LQ L ++ N +         +  +L +L +  N+L  +I+      L +I
Sbjct: 100 FEG----LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAI 154

Query: 404 EELRLSNNHF 413
           + + L+ N F
Sbjct: 155 QTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 874 LDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIESLDLSYNKLS 930
           + L  N +   IPP       +++ ++LS+N ++  +    F  LR + SL L  NK++
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 55/305 (18%), Positives = 111/305 (36%), Gaps = 41/305 (13%)

Query: 145 SSLTSLHLSHNILQGSIDAKEF-----DSLSNLEELDINDNEIDNVEVSRGYRGLRK--- 196
             +TSL LS N L  SI   E      ++ +++  L+++ N +         + L     
Sbjct: 22  HGVTSLDLSLNNL-YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80

Query: 197 -LKSLDLSGVGIRD-GNKLLQSMGSFP--SLNTLHLESNNFTATLTTTQEL-----HNFT 247
            + SL+LSG  +    +  L    +    ++  L L  N+F++   ++ E      +   
Sbjct: 81  NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK--SSSEFKQAFSNLPA 138

Query: 248 NLEYLTLDDSSLH----ISLLQSIGSIFPSLKNLSMSGCEV--NGVLS-GQGFPHF-KSL 299
           ++  L L  + L       L+Q + +I  ++ +L++ G  +         +       S+
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 300 EHLDMRFARIALN--TSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQEL 357
             LD+    + L        I       +  L+L  + L   S   L      L HLQ +
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 358 YIDNNDLRGSLPWC-------LANTTSLRILDVSFNQLTGS----ISSSPLVHLTSIEEL 406
           Y+D + ++               N   + ++D +  ++  S    IS+         +  
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVP 318

Query: 407 RLSNN 411
            L N 
Sbjct: 319 SLLNQ 323

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 69/383 (18%), Positives = 128/383 (33%), Gaps = 81/383 (21%)

Query: 17  LARLSSLRSLYLSDNRLEGSIDVKEL-DSLRD----LEELDIGGNKIDK---FMVSKGLS 68
            +    + SL LS N L  SI   EL  +  +    +  L++ GN +       + + L+
Sbjct: 18  TSIPHGVTSLDLSLNNL-YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 69  KLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRL-----SKL 123
            + +                     N+  L++SGN +      +  + L +        +
Sbjct: 77  AIPA---------------------NVTSLNLSGNFLSY----KSSDELVKTLAAIPFTI 111

Query: 124 KKLDLRGNLCNNSILSSVARL-----SSLTSLHLSHNILQGSIDAKEF-----DSLSNLE 173
             LDL  N  ++   S   +      +S+TSL+L  N L G   + E         +N+ 
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL-GIKSSDELIQILAAIPANVN 170

Query: 174 ELDINDNEIDNVEVSRGYRGLR----KLKSLDLSGVGIRD--GNKLLQSMGSFP-SLNTL 226
            L++  N + +   +   + L      + SLDLS   +      +L     S P  + +L
Sbjct: 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL 230

Query: 227 HLESNNFTATLTTT--QELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEV 284
           +L  N               +  +L+ + LD                  +KN+S   C+ 
Sbjct: 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD---------------IVKNMSKEQCK- 274

Query: 285 NGVLSGQGFPHFKSLEHLDMRFARI--ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSR 342
                G  FP+ + +  +D     I  + +     +I E        SL    L      
Sbjct: 275 ---ALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKH 331

Query: 343 ILDQGLCPL-AHLQELYIDNNDL 364
             +     +   L+E       L
Sbjct: 332 QTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 54/276 (19%), Positives = 101/276 (36%), Gaps = 49/276 (17%)

Query: 577 LQFLDLSNNKLTGE----IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSL-----RNLR 627
           +  LDLS N L       +    A    ++  L+LS NSL       +  +      N+ 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 628 WLLLEGNHF----VGEIPQSLSKC-SSLKGLYLNNNNLSGKIPRWLGNL-----KGLQHI 677
            L L GN        E+ ++L+    ++  L L  N+ S K               +  +
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 678 VMPKNHLEGPIPVEFCRL-----DSLQILDISDNNI--------SGSLPSCFYPLSIKQV 724
            +  N L      E  ++      ++  L++  NN+        +  L S   P S+  +
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI--PASVTSL 201

Query: 725 HLSKNMLHGQ----LKEGTFFNCSSLVTLDLSYNYLNGS----IPDWIDGLSQLSHLNLA 776
            LS N+L  +    L        + +V+L+L  N L+G     +    D L  L  + L 
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 777 HNNLEGEVPIQ-------LCRLNQLQLLDLSDNNLH 805
           ++ ++     Q          + ++ L+D +   +H
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 33/213 (15%), Positives = 70/213 (32%), Gaps = 33/213 (15%)

Query: 2   LDLSGNAFNNNVLSSLARL-----SSLRSLYLSDNRLEGSIDVKEL-DSLRD----LEEL 51
           L+L GN         L ++     +++ SL L  N L  S +  EL   L      +  L
Sbjct: 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL-ASKNCAELAKFLASIPASVTSL 201

Query: 52  DIGGNKIDK---FMVSKGL----SKLKSLGLSGTGF--KGTFDVRE-FDSFNNLEVLDMS 101
           D+  N +       ++       + + SL L           +++   DS  +L+ + + 
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 102 GNEIDNLVVPQG---LERLSRLSKLKKLDLRGNLCNNSILSSVARL-----SSLTSLHLS 153
            + + N+   Q          + K+  +D  G   + S    ++ L            L 
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLL 321

Query: 154 HN----ILQGSIDAKEFDSLSNLEELDINDNEI 182
           +       +   + ++ +    L E       +
Sbjct: 322 NQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.6 bits (124), Expect = 7e-07
 Identities = 54/329 (16%), Positives = 110/329 (33%), Gaps = 91/329 (27%)

Query: 644 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 703
            S    +  L L+ NNL       L   +   +                    S+  L++
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELI--QAFANTPA-----------------SVTSLNL 58

Query: 704 SDNNISGS--------LPSCFYPLSIKQVHLSKNMLHGQ----LKEGTFFNCSSLVTLDL 751
           S N++           L +   P ++  ++LS N L  +    L +       ++  LDL
Sbjct: 59  SGNSLGFKNSDELVQILAAI--PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL 116

Query: 752 SYNYL-NGSIPDWIDGL----SQLSHLNLAHNNLEGEVPIQLCRL-----NQLQLLDLSD 801
            +N   + S  ++        + ++ LNL  N+L  +   +L ++       +  L+L  
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176

Query: 802 NNL---------HGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIF 852
           NNL           L       T+L  S N              + G +     ++  IF
Sbjct: 177 NNLASKNCAELAKFLASIPASVTSLDLSANL-------------L-GLKSY--AELAYIF 220

Query: 853 EFTTKNIAYAYQGRVLSLLAGLDLSCNKL----VGHIPPQIGNLTRIQTLNLSHNNLTGT 908
                +            +  L+L  N L    + ++     +L  +QT+ L ++ +   
Sbjct: 221 SSIPNH------------VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268

Query: 909 -------IPLTFSNLRHIESLDLSYNKLS 930
                  +   F N++ I  +D +  ++ 
Sbjct: 269 SKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 52/279 (18%), Positives = 95/279 (34%), Gaps = 44/279 (15%)

Query: 522 IHSHKRLRFLDVSNNNFQGHIPVEIGDILP----SLVYFNISMNALDGSIPSSFGNVI-- 575
                 +  LD+S NN      VE+         S+   N+S N+L          ++  
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 576 ---FLQFLDLSNNKLTGE----IPDHLAMCCVNLEFLSLSNNSLKG----HIFSRIFSL- 623
               +  L+LS N L+ +    +   LA     +  L L  N               +L 
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 624 RNLRWLLLEGNHF----VGEIPQSLSKC-SSLKGLYLNNNNLSGKIPRWLGNL-----KG 673
            ++  L L GN        E+ Q L+   +++  L L  NNL+ K    L          
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 674 LQHIVMPKNHLEGPIPVEFCRL-----DSLQILDISDNNISGS----LPSCFYPL-SIKQ 723
           +  + +  N L      E   +     + +  L++  N + G     L      L  ++ 
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 724 VHLSKNMLHGQLKEG------TFFNCSSLVTLDLSYNYL 756
           V+L  +++    KE        F N   ++ +D +   +
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 39/186 (20%), Positives = 73/186 (39%), Gaps = 43/186 (23%)

Query: 25  SLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTF 84
            L+     +E  +D   L +L+  + L +  N I+K      LS ++             
Sbjct: 29  ELHGMIPPIEK-MD-ATLSTLKACKHLALSTNNIEKI---SSLSGME------------- 70

Query: 85  DVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARL 144
                    NL +L +  N I  +   + L+ +     L++L +  N    + LS + +L
Sbjct: 71  ---------NLRILSLGRNLIKKI---ENLDAV--ADTLEELWISYN--QIASLSGIEKL 114

Query: 145 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEI----DNVEVSRGYRG-----LR 195
            +L  L++S+N +    +  +  +L  LE+L +  N +         +  YR      L 
Sbjct: 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174

Query: 196 KLKSLD 201
            LK LD
Sbjct: 175 NLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 10/115 (8%)

Query: 90  DSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTS 149
            +    + L +S N I+ +        LS +  L+ L L  NL    I +  A   +L  
Sbjct: 45  STLKACKHLALSTNNIEKI------SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEE 97

Query: 150 LHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 204
           L +S+N +         + L NL  L +++N+I N         L KL+ L L+G
Sbjct: 98  LWISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 11/138 (7%)

Query: 120 LSKLKKLDLRGNLCN-NSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIN 178
            ++ +K++L G +     + ++++ L +   L LS N ++  I +     + NL  L + 
Sbjct: 22  ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISS--LSGMENLRILSLG 78

Query: 179 DNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLT 238
            N I  +E          L+ L +S   I      L  +    +L  L++ SNN      
Sbjct: 79  RNLIKKIENLDAV--ADTLEELWISYNQIAS----LSGIEKLVNLRVLYM-SNNKITNWG 131

Query: 239 TTQELHNFTNLEYLTLDD 256
              +L     LE L L  
Sbjct: 132 EIDKLAALDKLEDLLLAG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 27/129 (20%), Positives = 59/129 (45%), Gaps = 10/129 (7%)

Query: 321 ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRI 380
            ++ + K+L+LS + +     +I    L  + +L+ L +  N ++  +    A   +L  
Sbjct: 45  STLKACKHLALSTNNI----EKI--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEE 97

Query: 381 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEING 440
           L +S+NQ+    S S +  L ++  L +SNN       ++ L    KL+      N +  
Sbjct: 98  LWISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154

Query: 441 EINESHSLT 449
           +  E+++ +
Sbjct: 155 DYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 34/133 (25%)

Query: 2   LDLSGNAFNNNVLSSLARLS-SLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 60
           L L  N      + +L  ++ +L  L++S N++     +  ++ L +L  L +  NKI  
Sbjct: 75  LSLGRNLIKK--IENLDAVADTLEELWISYNQIA---SLSGIEKLVNLRVLYMSNNKITN 129

Query: 61  FMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLER---- 116
           +     + KL +L                   + LE L ++GN + N             
Sbjct: 130 W---GEIDKLAAL-------------------DKLEDLLLAGNPLYNDYKENNATSEYRI 167

Query: 117 --LSRLSKLKKLD 127
             + RL  LKKLD
Sbjct: 168 EVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 33/165 (20%), Positives = 58/165 (35%), Gaps = 54/165 (32%)

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 698
           ++  +LS   + K L L+ NN+          +  L                    +++L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE--------KISSLSG------------------MENL 72

Query: 699 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 758
           +IL +  N I            I               E       +L  L +SYN +  
Sbjct: 73  RILSLGRNLIK----------KI---------------ENLDAVADTLEELWISYNQIA- 106

Query: 759 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDN 802
           S+   I+ L  L  L +++N +     I  L  L++L+ L L+ N
Sbjct: 107 SLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 601 NLEFLSLSNNSLK-GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN 659
             E + L         + + + +L+  + L L  N+   +I  SLS   +L+ L L  N 
Sbjct: 24  EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNL 81

Query: 660 LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 709
           +  KI         L+ + +  N +     +E  +L +L++L +S+N I+
Sbjct: 82  IK-KIENLDAVADTLEELWISYNQIASLSGIE--KLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 17/147 (11%)

Query: 567 IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNL 626
           + ++   +   + L LS N +  +I   L+    NL  LSL  N +K  I +       L
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLS-GMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 627 RWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKNHLE 685
             L +  N         + K  +L+ LY++NN ++       L  L  L+ +++  N L 
Sbjct: 96  EELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153

Query: 686 GPIPVEFC----------RLDSLQILD 702
                             RL +L+ LD
Sbjct: 154 NDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 20/121 (16%)

Query: 295 HFKSLEHLDMRFARIALNTSFLQIIG-ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 353
             K+ +HL +    I       +I     M +L+ LSL       N  + ++        
Sbjct: 46  TLKACKHLALSTNNIE------KISSLSGMENLRILSLGR-----NLIKKIENLDAVADT 94

Query: 354 LQELYIDNN---DLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 410
           L+EL+I  N    L G     +    +LR+L +S N++T       L  L  +E+L L+ 
Sbjct: 95  LEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

Query: 411 N 411
           N
Sbjct: 150 N 150

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 65.3 bits (159), Expect = 3e-11
 Identities = 55/279 (19%), Positives = 99/279 (35%), Gaps = 22/279 (7%)

Query: 143 RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDL 202
           RL+S  SL  + ++   ++       L +   +          +    +    +++ +DL
Sbjct: 41  RLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDL 100

Query: 203 SGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD-SSLHI 261
           S   I     L   +     L  L LE    +        L   +NL  L L   S    
Sbjct: 101 SNSVIEVST-LHGILSQCSKLQNLSLEGLRLSDP--IVNTLAKNSNLVRLNLSGCSGFSE 157

Query: 262 SLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHF-----KSLEHLDMRFARIALNTSFL 316
             LQ++ S    L  L++S C      + +          +++  L++   R  L  S L
Sbjct: 158 FALQTLLSSCSRLDELNLSWCFD---FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214

Query: 317 QIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDN-NDLRGSLPWCLANT 375
             +    P+L +L LS S +  N           L +LQ L +    D+       L   
Sbjct: 215 STLVRRCPNLVHLDLSDSVMLKNDCFQE---FFQLNYLQHLSLSRCYDIIPETLLELGEI 271

Query: 376 TSLRILDVSFNQLTGSISSSPLVHL-TSIEELRLSNNHF 413
            +L+ L V      G +    L  L  ++  L+++ +HF
Sbjct: 272 PTLKTLQVF-----GIVPDGTLQLLKEALPHLQINCSHF 305

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 60.7 bits (147), Expect = 7e-10
 Identities = 37/187 (19%), Positives = 73/187 (39%), Gaps = 18/187 (9%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKEL-DSLRDLEELDIGG-NKID 59
           L L G   ++ ++++LA+ S+L  L LS         ++ L  S   L+EL++       
Sbjct: 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182

Query: 60  ----KFMVSKGLSKLKSLGLSGTGFKGTFD-VREF-DSFNNLEVLDMSGNEIDNLVVPQG 113
               +  V+     +  L LSG         +        NL  LD+S +    ++    
Sbjct: 183 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS---VMLKNDC 239

Query: 114 LERLSRLSKLKKLDLRG--NLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSN 171
            +   +L+ L+ L L    ++   + L  +  + +L +L +   +  G++          
Sbjct: 240 FQEFFQLNYLQHLSLSRCYDIIPET-LLELGEIPTLKTLQVFGIVPDGTLQL----LKEA 294

Query: 172 LEELDIN 178
           L  L IN
Sbjct: 295 LPHLQIN 301

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 58.0 bits (140), Expect = 5e-09
 Identities = 55/270 (20%), Positives = 104/270 (38%), Gaps = 35/270 (12%)

Query: 63  VSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSK 122
           V+  L     +            + E  S   ++ +D+S + I+          LS+ SK
Sbjct: 63  VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV---STLHGILSQCSK 119

Query: 123 LKKLDLRGNLCNNSILSSVARLSSLTSLHLSH--NILQGSIDAKEFDSLSNLEELDIND- 179
           L+ L L G   ++ I++++A+ S+L  L+LS      + ++      S S L+EL+++  
Sbjct: 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFAL-QTLLSSCSRLDELNLSWC 178

Query: 180 NEIDNVEVSRG-YRGLRKLKSLDLSGVGIRDGNKLLQSMGSF-PSLNTLHLESNNFTATL 237
            +     V          +  L+LSG         L ++    P+L  L L S++     
Sbjct: 179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL-SDSVMLKN 237

Query: 238 TTTQELHNFTNLEYLTL-------DDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSG 290
              QE      L++L+L        ++ L +  +       P+LK L + G   +G    
Sbjct: 238 DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI-------PTLKTLQVFGIVPDG---- 286

Query: 291 QGFPHFKSLEHLDMRFARIALNTSFLQIIG 320
                  +L+ L      + +N S    I 
Sbjct: 287 -------TLQLLKEALPHLQINCSHFTTIA 309

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 58/304 (19%), Positives = 101/304 (33%), Gaps = 57/304 (18%)

Query: 518 FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFL 577
           +          + LD++  N    +   +  +   ++ F    + +D  +   F     +
Sbjct: 39  WYRLASDESLWQTLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPF-RV 95

Query: 578 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFV 637
           Q +DLSN+ +       +   C  L+ LSL    L   I + +    NL  L L G    
Sbjct: 96  QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 155

Query: 638 GE--IPQSLSKCSSLKGLYLNN-NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 694
            E  +   LS CS L  L L+   + +          K +Q  V                
Sbjct: 156 SEFALQTLLSSCSRLDELNLSWCFDFTE---------KHVQVAV-----------AHVSE 195

Query: 695 LDSLQILDISDNNISGSLPSCFYPLSIKQV-HLSKNMLHGQLKEGTFFNCSSLVTLDLSY 753
             ++  L++S              L    +  L +              C +LV LDLS 
Sbjct: 196 --TITQLNLSG---------YRKNLQKSDLSTLVR-------------RCPNLVHLDLSD 231

Query: 754 -NYLNGSIPDWIDGLSQLSHLNLAH-NNLEGEVPIQLCRLNQLQLLDL----SDNNLHGL 807
              L          L+ L HL+L+   ++  E  ++L  +  L+ L +     D  L  L
Sbjct: 232 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL 291

Query: 808 IPSC 811
             + 
Sbjct: 292 KEAL 295

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 14/173 (8%)

Query: 496 WLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSN-NNFQGHIPVEIGDILPSLV 554
            +L   +KL+ L L    L+ P    +  +  L  L++S  + F       +      L 
Sbjct: 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171

Query: 555 YFNIS------MNALDGSIPSSFGNVIFLQFLDLS--NNKLTGEIPDHLAMCCVNLEFLS 606
             N+S         +  ++         +  L+LS     L       L   C NL  L 
Sbjct: 172 ELNLSWCFDFTEKHVQVAVAHVSET---ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228

Query: 607 LSN-NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEI-PQSLSKCSSLKGLYLNN 657
           LS+   LK   F   F L  L+ L L   + +       L +  +LK L +  
Sbjct: 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 46/207 (22%), Positives = 90/207 (43%), Gaps = 11/207 (5%)

Query: 6   GNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSK 65
             +F +  L+       ++ + LS++ +E S     L     L+ L + G ++   +V+ 
Sbjct: 78  PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 137

Query: 66  --GLSKLKSLGLSG-TGFKGTFDVREFDSFNNLEVLDMSG-NEIDNLVVPQGLERLSRLS 121
               S L  L LSG +GF          S + L+ L++S   +     V   +  +S   
Sbjct: 138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE-- 195

Query: 122 KLKKLDLRG---NLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIN 178
            + +L+L G   NL  + + + V R  +L  L LS +++  +   +EF  L+ L+ L ++
Sbjct: 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255

Query: 179 D-NEIDNVEVSRGYRGLRKLKSLDLSG 204
              +I    +      +  LK+L + G
Sbjct: 256 RCYDIIPETLLE-LGEIPTLKTLQVFG 281

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 38/165 (23%)

Query: 21  SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGF 80
                L L++N             L  L +++   NKI    + +G              
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD--IEEGA------------- 76

Query: 81  KGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSS 140
                   F+  + +  + ++ N ++N+     +     L  LK L LR N      ++ 
Sbjct: 77  --------FEGASGVNEILLTSNRLENV--QHKM--FKGLESLKTLMLRSNR-----ITC 119

Query: 141 V-----ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 180
           V       LSS+  L L  N +  ++    FD+L +L  L++  N
Sbjct: 120 VGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 27/150 (18%)

Query: 94  NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-----ARLSSLT 148
               L ++ NE   L   +      +L +L+K++   N      ++ +        S + 
Sbjct: 33  YTAELRLNNNEFTVL---EATGIFKKLPQLRKINFSNNK-----ITDIEEGAFEGASGVN 84

Query: 149 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIR 208
            + L+ N L+ ++  K F  L +L+ L +  N I  V  +  + GL  ++ L L      
Sbjct: 85  EILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVG-NDSFIGLSSVRLLSL------ 136

Query: 209 DGNKLLQSM--GSF---PSLNTLHLESNNF 233
             N++  ++  G+F    SL+TL+L +N F
Sbjct: 137 YDNQI-TTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 18/146 (12%)

Query: 672 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS-CFYPLS-IKQVHLSKN 729
           + L  I  P++     IP           L +++N  +    +  F  L  +++++ S N
Sbjct: 21  QKLNKI--PEH-----IPQ------YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN 67

Query: 730 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQL 788
            +   ++EG F   S +  + L+ N L  ++   +  GL  L  L L  N +        
Sbjct: 68  KIT-DIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSF 125

Query: 789 CRLNQLQLLDLSDNNLHGLIPSCFDN 814
             L+ ++LL L DN +  + P  FD 
Sbjct: 126 IGLSSVRLLSLYDNQITTVAPGAFDT 151

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 39/160 (24%)

Query: 2   LDLSGNAFNN-NVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 60
           L L+ N F          +L  LR +  S+N++   I+    +    + E+ +  N    
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSN---- 91

Query: 61  FMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRL 120
                   +L+++             + F    +L+ L +  N I  +           L
Sbjct: 92  --------RLENV-----------QHKMFKGLESLKTLMLRSNRITCV--GNDS--FIGL 128

Query: 121 SKLKKLDLRGNLCNNSILSSVA-----RLSSLTSLHLSHN 155
           S ++ L L  N      +++VA      L SL++L+L  N
Sbjct: 129 SSVRLLSLYDNQ-----ITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 6/114 (5%)

Query: 718 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 776
           P    ++ L+ N        G F     L  ++ S N +   I +   +G S ++ + L 
Sbjct: 31  PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89

Query: 777 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSS 826
            N LE         L  L+ L L  N +  +    F        L    N  ++
Sbjct: 90  SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT 143

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 2/130 (1%)

Query: 578 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHF 636
             L L+NN+ T      +      L  ++ SNN +   I    F     +  +LL  N  
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93

Query: 637 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 696
                +      SLK L L +N ++         L  ++ + +  N +    P  F  L 
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153

Query: 697 SLQILDISDN 706
           SL  L++  N
Sbjct: 154 SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 531 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 590
           L ++NN F       I   LP L   N S N +      +F     +  + L++N+L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 591 IP----DHLAMCCVNLEFLSLSNN---SLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 643
           +       L     +L+ L L +N    +    F     L ++R L L  N      P +
Sbjct: 96  VQHKMFKGL----ESLKTLMLRSNRITCVGNDSFIG---LSSVRLLSLYDNQITTVAPGA 148

Query: 644 LSKCSSLKGLYLNNN 658
                SL  L L  N
Sbjct: 149 FDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 653 LYLNNNNLSGKIPR-WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS 711
           L LNNN  +          L  L+ I    N +       F     +  + ++ N +  +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 712 LPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLS 768
           +    F  L S+K + L  N +   +   +F   SS+  L L  N +  ++     D L 
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLH 153

Query: 769 QLSHLNLAHN 778
            LS LNL  N
Sbjct: 154 SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 8/152 (5%)

Query: 581 DLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGE 639
           D SN KL  +IP+H+         L L+NN       + IF  L  LR +    N     
Sbjct: 17  DCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI 72

Query: 640 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSL 698
              +    S +  + L +N L     +    L+ L+ +++  N +   +  + F  L S+
Sbjct: 73  EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSV 131

Query: 699 QILDISDNNISGSLPSCFYPL-SIKQVHLSKN 729
           ++L + DN I+   P  F  L S+  ++L  N
Sbjct: 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 23/155 (14%)

Query: 133 CNNSILSSV-ARL-SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 190
           C+N  L+ +   +      L L++N          F  L  L +++ ++N+I ++E    
Sbjct: 18  CSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG-A 76

Query: 191 YRGLRKLKSLDLSGVGIRDGNKL--LQSMGSF---PSLNTLHLESNNFTATLTTTQELHN 245
           + G   +  + L+       N+L  +Q    F    SL TL L SN  T     +     
Sbjct: 77  FEGASGVNEILLT------SNRLENVQH-KMFKGLESLKTLMLRSNRITCVGNDS--FIG 127

Query: 246 FTNLEYLTLDDSSLHISLLQSI-GSIFPSLKNLSM 279
            +++  L     SL+ + + ++    F +L +LS 
Sbjct: 128 LSSVRLL-----SLYDNQITTVAPGAFDTLHSLST 157

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 868 LSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSY 926
            S +  + L+ N+L   +  ++   L  ++TL L  N +T     +F  L  +  L L  
Sbjct: 80  ASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138

Query: 927 NKLSGKIPR----QLVDLNTLAIF 946
           N+++  +       L  L+TL + 
Sbjct: 139 NQIT-TVAPGAFDTLHSLSTLNLL 161

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 8/76 (10%)

Query: 874 LDLSCNKLVGHIPPQIG--NLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 931
           L L+ N+    +        L +++ +N S+N +T      F     +  + L+ N+L  
Sbjct: 37  LRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 932 KIP----RQLVDLNTL 943
            +     + L  L TL
Sbjct: 96  -VQHKMFKGLESLKTL 110

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 39/184 (21%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           LDL          ++   L+ L  L L  N+L+ ++     D L +L  L +  N     
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANN----- 93

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
                  +L SL            +  FD    L+ L + GN++ +L  P G+    RL+
Sbjct: 94  -------QLASL-----------PLGVFDHLTQLDKLYLGGNQLKSL--PSGV--FDRLT 131

Query: 122 KLKKLDLRGNLCNNSILSSV-----ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELD 176
           KLK+L L  N      L S+      +L++L +L LS N LQ S+    FD L  L+ + 
Sbjct: 132 KLKELRLNTNQ-----LQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTIT 185

Query: 177 INDN 180
           +  N
Sbjct: 186 LFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 8/137 (5%)

Query: 682 NHLEGPIPVEFCRLDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGT 739
             L       F  L  L  L++  N +  +L +  F  L  +  + L+ N L   L  G 
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLPLGV 102

Query: 740 FFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLL 797
           F + + L  L L  N L  S+P  + D L++L  L L  N L+  +P     +L  LQ L
Sbjct: 103 FDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTL 160

Query: 798 DLSDNNLHGLIPSCFDN 814
            LS N L  +    FD 
Sbjct: 161 SLSTNQLQSVPHGAFDR 177

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 45/158 (28%), Positives = 63/158 (39%), Gaps = 25/158 (15%)

Query: 561 NALDGSIPSSFGNVIFLQFLDLSNNKLT---GEIPDHLAMCCVNLEFLSLSNNSLKGHIF 617
             L     ++F  +  L +L+L  N+L      + D L      L  L L+NN L   + 
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL----TELGTLGLANNQLAS-LP 99

Query: 618 SRIF-SLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYLNNNNLSGKIPRWLG-- 669
             +F  L  L  L L GN       +SL      + + LK L LN N L   IP   G  
Sbjct: 100 LGVFDHLTQLDKLYLGGNQL-----KSLPSGVFDRLTKLKELRLNTNQLQ-SIPA--GAF 151

Query: 670 -NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN 706
             L  LQ + +  N L+      F RL  LQ + +  N
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 22/161 (13%)

Query: 124 KKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 183
           +KLDL+         ++   L+ LT L+L +N LQ ++ A  FD L+ L  L + +N++ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 184 NVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSM--GSFPS---LNTLHLESNNFTATLT 238
           ++     +  L +L  L L       GN+ L+S+  G F     L  L L +N   +   
Sbjct: 97  SLP-LGVFDHLTQLDKLYLG------GNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148

Query: 239 TTQELHNFTNLEYLTLDDSSLHISLLQSI-GSIFPSLKNLS 278
                  F  L  L     SL  + LQS+    F  L  L 
Sbjct: 149 GA-----FDKLTNLQ--TLSLSTNQLQSVPHGAFDRLGKLQ 182

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 11/141 (7%)

Query: 699 QILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 757
           + LD+    ++    + F  L+ +  ++L  N L   L  G F + + L TL L+ N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLA 96

Query: 758 GSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGLIPSCFDN- 814
            S+P  + D L+QL  L L  N L+  +P  +  RL +L+ L L+ N L  +    FD  
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154

Query: 815 ---TTLHESYNNNSS-PDKPF 831
               TL  S N   S P   F
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAF 175

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 51/188 (27%), Positives = 72/188 (38%), Gaps = 41/188 (21%)

Query: 600 VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLY 654
            + E L L +  L     +    L  L WL L+ N       Q+LS       + L  L 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-----QTLSAGVFDDLTELGTLG 89

Query: 655 LNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 714
           L NN L+  +P  +                       F  L  L  L +  N +  SLPS
Sbjct: 90  LANNQLA-SLPLGV-----------------------FDHLTQLDKLYLGGNQLK-SLPS 124

Query: 715 -CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLS 771
             F  L  +K++ L+ N L   +  G F   ++L TL LS N L  S+P    D L +L 
Sbjct: 125 GVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQ 182

Query: 772 HLNLAHNN 779
            + L   N
Sbjct: 183 TITL-FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 48/184 (26%), Positives = 69/184 (37%), Gaps = 39/184 (21%)

Query: 749 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 808
           LDL    L         GL++L+ LNL +N L+         L +L  L L++N L  L 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 809 PSCFDNTT----LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQ 864
              FD+ T    L+   N   S             P G  ++                  
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSL------------PSGVFDR------------------ 129

Query: 865 GRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 923
              L+ L  L L+ N+L   IP      LT +QTL+LS N L       F  L  ++++ 
Sbjct: 130 ---LTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185

Query: 924 LSYN 927
           L  N
Sbjct: 186 LFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 16/170 (9%)

Query: 247 TNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGV--LSGQGFPHFKSLEHLDM 304
            + E L L  + L         + F  L  L+    + N +  LS   F     L  L +
Sbjct: 35  ADTEKLDLQSTGLA----TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90

Query: 305 RFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 364
              ++    S    + + +  L  L L G+ L +  S + D+    L  L+EL ++ N L
Sbjct: 91  ANNQL---ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR----LTKLKELRLNTNQL 143

Query: 365 RGSLPW-CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 413
           + S+P       T+L+ L +S NQL  S+       L  ++ + L  N F
Sbjct: 144 Q-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 718 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 776
           P   +++ L    L   L + TF   + L  L+L YN L  ++   + D L++L  L LA
Sbjct: 34  PADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLA 91

Query: 777 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYN 822
           +N L          L QL  L L  N L  L    FD       L  + N
Sbjct: 92  NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 322 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP-WCLANTTSLRI 380
            +  L +L+L  + L T S+ + D     L  L  L + NN L  SLP     + T L  
Sbjct: 57  GLTKLTWLNLDYNQLQTLSAGVFDD----LTELGTLGLANNQLA-SLPLGVFDHLTQLDK 111

Query: 381 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 414
           L +  NQL  S+ S     LT ++ELRL+ N  +
Sbjct: 112 LYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ 144

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 63.2 bits (153), Expect = 1e-10
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 1/95 (1%)

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRW-LGNLKGLQHIVMPKNHLEGPIPVEFCRLDS 697
           +    L    +L  LY+ N      +    L  L  L+++ + K+ L    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 698 LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH 732
           L  L++S N +          LS++++ LS N LH
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.6 bits (141), Expect = 4e-09
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 10/107 (9%)

Query: 131 NLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 190
                  L  +    +LT L++ +      ++ ++   L  L  L I  + +  V     
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDA 75

Query: 191 YRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSF--PSLNTLHLESNNFT 234
           +    +L  L+LS       N L   S  +    SL  L L  N   
Sbjct: 76  FHFTPRLSRLNLS------FNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.5 bits (133), Expect = 4e-08
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 866 RVLSLLAGLDLSCNKLVGHIPPQ-IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 924
                L  L +   + + H+  + +  L  ++ L +  + L    P  F     +  L+L
Sbjct: 28  PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87

Query: 925 SYNKLSGKIPRQLVDLNTLAIFIVAYNNL 953
           S+N L   +  + V   +L   +++ N L
Sbjct: 88  SFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.1 bits (132), Expect = 5e-08
 Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 6/96 (6%)

Query: 346 QGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIE 404
             L    +L ELYI+N      L    L     LR L +  + L   ++         + 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS 83

Query: 405 ELRLSNNHFRIPVSLEP-LFNHSKLKIFDAKNNEIN 439
            L LS N      SL         L+      N ++
Sbjct: 84  RLNLSFNALE---SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 1e-07
 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 2/96 (2%)

Query: 885 IPPQIGNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 943
               +     +  L + +      + L     L  + +L +  + L    P        L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 944 AIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLC 979
           +   +++N L   +   T Q  +  +    GNP  C
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 744 SSLVTLDLSYNYLNGSIPDW-IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 802
            +L  L +        +    + GL +L +L +  + L    P       +L  L+LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 803 NLHGLIPSCFDNTTLHESY-NNNS 825
            L  L        +L E   + N 
Sbjct: 91  ALESLSWKTVQGLSLQELVLSGNP 114

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 1e-06
 Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 3/96 (3%)

Query: 566 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LR 624
                      L  L + N +    +          L  L++  + L+  +    F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 625 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL 660
            L  L L  N     +     +  SL+ L L+ N L
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 12/155 (7%)

Query: 322 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 381
              +L  L +       +   +  + L  L  L+ L I  + LR   P     T  L  L
Sbjct: 29  GAENLTELYIEN---QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 382 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-------IPVSLEPLFNHSKLKIFDAK 434
           ++SFN L  S+S   +  L S++EL LS N          +    E        +     
Sbjct: 86  NLSFNALE-SLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCH 143

Query: 435 NNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTF 469
                  +  +    P  +++  + S + GD V  
Sbjct: 144 GQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLL 178

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 6e-06
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 17/107 (15%)

Query: 83  TFDVREFDSFNNLEVLDMSGN-EIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV 141
              +       NL  L +     + +L     L  L  L +L+ L +  +      L  V
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHL----ELRDLRGLGELRNLTIVKSG-----LRFV 71

Query: 142 AR-----LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 183
           A         L+ L+LS N L+ S+  K    LS L+EL ++ N + 
Sbjct: 72  APDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 7e-06
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 1/113 (0%)

Query: 693 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 752
           C       L  + +    SL       ++ ++++        L+         L  L + 
Sbjct: 5   CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 753 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 805
            + L    PD      +LS LNL+ N LE  +  +  +   LQ L LS N LH
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 6e-05
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 526 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 585
           + L  L + N     H+ +     L  L    I  + L    P +F     L  L+LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 586 KLTGEIPDHLAMCCVNLEFLSLSNNSL 612
            L       +    ++L+ L LS N L
Sbjct: 91  ALESLSWKTVQG--LSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 8e-05
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 12  NVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVS--KGLSK 69
           + L  L    +L  LY+ + +    +++++L  L +L  L I  + +            +
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 70  LKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEID 106
           L  L LS    + +   +      +L+ L +SGN + 
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 9e-05
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 743 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSD 801
                 L  + +         + G   L+ L + +      + ++ L  L +L+ L +  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 802 NNLHGLIPSCFDN----TTLHESYNNNSS-PDKPFK 832
           + L  + P  F      + L+ S+N   S   K  +
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 44/137 (32%), Positives = 60/137 (43%), Gaps = 11/137 (8%)

Query: 47  DLEELDIGGNKIDK--FMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNE 104
           + + L +  N+I K    V   L  LK L L          V  FDS   L VLD+  N+
Sbjct: 41  NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQ 99

Query: 105 IDNLVVPQGLERLSRLSKLKKLDLRGN-LCNNSILSSVARLSSLTSLHLSHNILQGSIDA 163
           +  L  P  +    RL  LK+L +  N L    +   + RL+ LT L L  N L+ SI  
Sbjct: 100 LTVL--PSAV--FDRLVHLKELFMCCNKL--TELPRGIERLTHLTHLALDQNQLK-SIPH 152

Query: 164 KEFDSLSNLEELDINDN 180
             FD LS+L    +  N
Sbjct: 153 GAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 10/121 (8%)

Query: 561 NALDGSIPSSFGNVIFLQFLDLSNNKLT---GEIPDHLAMCCVNLEFLSLSNNSLKGHIF 617
           N +    P  F ++I L+ L L +N+L      + D L      L  L L  N L   + 
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL----TQLTVLDLGTNQLTV-LP 104

Query: 618 SRIF-SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 676
           S +F  L +L+ L +  N    E+P+ + + + L  L L+ N L          L  L H
Sbjct: 105 SAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163

Query: 677 I 677
            
Sbjct: 164 A 164

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 699 QILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 757
           QIL + DN I+   P  F  L  +K+++L  N L   L  G F + + L  LDL  N L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 758 GSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 814
             +P  + D L  L  L +  N L  E+P  + RL  L  L L  N L  +    FD 
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 5/123 (4%)

Query: 682 NHLEGPIPVEFCRLDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGT 739
           N +    P  F  L +L+ L +  N +  +LP   F  L  +  + L  N L   L    
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-VLPSAV 107

Query: 740 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 799
           F     L  L +  N L   +P  I+ L+ L+HL L  N L+        RL+ L    L
Sbjct: 108 FDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166

Query: 800 SDN 802
             N
Sbjct: 167 FGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 45/154 (29%), Positives = 62/154 (40%), Gaps = 29/154 (18%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L L  N            L +L+ LYL  N+L  ++ V   DSL  L  LD+G N     
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTN----- 98

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
                  +L  L               FD   +L+ L M  N++  L  P+G+E   RL+
Sbjct: 99  -------QLTVL-----------PSAVFDRLVHLKELFMCCNKLTEL--PRGIE---RLT 135

Query: 122 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHN 155
            L  L L  N   +    +  RLSSLT  +L  N
Sbjct: 136 HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 42/180 (23%), Positives = 53/180 (29%), Gaps = 56/180 (31%)

Query: 749 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGL 807
           L L  N +    P   D L  L  L L  N L   +P+ +   L QL +LDL  N L  L
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 808 IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV 867
             + F               D+                                      
Sbjct: 104 PSAVF---------------DR-------------------------------------- 110

Query: 868 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 927
           L  L  L + CNKL   +P  I  LT +  L L  N L       F  L  +    L  N
Sbjct: 111 LVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 13/112 (11%)

Query: 124 KKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 183
           + L L  N            L +L  L+L  N L  ++    FDSL+ L  LD+  N++ 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 184 NVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSM----GSFPSLNTLHLESN 231
            +  S  +  L  LK L +        NK L  +         L  L L+ N
Sbjct: 102 VLP-SAVFDRLVHLKELFM------CCNK-LTELPRGIERLTHLTHLALDQN 145

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 42/247 (17%), Positives = 89/247 (36%), Gaps = 31/247 (12%)

Query: 20  LSSLRSLYLSDNRLEGSIDVKEL-----DSLRDLEELDIGGNKIDK---FMVSKGLSKLK 71
           LSSLR L L+  R+   +    +          L+E+++   ++D      +     + +
Sbjct: 71  LSSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129

Query: 72  SLGLSGT--GFKGTFDVREFDSFNN--LEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLD 127
            LGL     G +   D+R+    +   +  L +S N +    V   +E L+  + +  L 
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLS 189

Query: 128 LRGNLCNN----SILSSVARLSSLTSLHLSHNILQGSIDAKEFDSL----SNLEELDIND 179
           L      +     + + + R   L  L++++N   G   A           +LE L +  
Sbjct: 190 LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA-GDTAALALARAAREHPSLELLHLYF 248

Query: 180 NEIDNV------EVSRGYRGLRKLKSLDLSGVGIRD-GNKLLQSMGSFPSLNTLHLESNN 232
           NE+ +       ++     G  ++      G  + +  + +L  +    +LN+       
Sbjct: 249 NELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQR--NLNSWDRARVQ 306

Query: 233 FTATLTT 239
               L  
Sbjct: 307 RHLELLL 313

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 59/342 (17%), Positives = 107/342 (31%), Gaps = 46/342 (13%)

Query: 93  NNLEVLDMSGNEIDNLVVPQGLERLSR---------LSKLKKLDLRGNLCNNSILSSVAR 143
           +N  VL   G  I NL   +  + + +         L   + LD              A 
Sbjct: 10  HNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAE 69

Query: 144 -LSSLTSLHLSHNILQGSIDAKEF-----DSLSNLEELDINDNEIDNVEVSRGYRGLRKL 197
            LSSL  L+L+   +   +               L+E+++   ++D   +        + 
Sbjct: 70  VLSSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRA 128

Query: 198 KSLDLSGVGIRD-GNKLLQSMGSFP--SLNTLHLESNNFTAT--LTTTQELHNFTNLEYL 252
           + L L    +     K L+ +       + TL L +N  TA       + L   T++ +L
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL 188

Query: 253 TLDDSSLHISLLQSIGSIF---PSLKNLSMSGCEV--NGVLS-GQGFPHFKSLEHLDMRF 306
           +L  + L    L+ + +       L+ L+++         L+  +      SLE L + F
Sbjct: 189 SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248

Query: 307 ARI----ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN 362
             +          L    E    +      G+ +    S IL +    L       +  +
Sbjct: 249 NELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRH 308

Query: 363 ------DLRGSL-----PWCLANT----TSLRILDVSFNQLT 389
                 DL  S      PW  A        +R L        
Sbjct: 309 LELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 16/155 (10%)

Query: 523 HSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG-----NVIFL 577
                L  +++++          +  +        + +N+L              +   +
Sbjct: 98  SGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQI 157

Query: 578 QFLDLSNNKLTGEIPDHLA---MCCVNLEFLSLSNNSLK----GHIFSRIFSLRNLRWLL 630
             L LSNN LT      L        ++  LSL +  L       + +++   R L+ L 
Sbjct: 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217

Query: 631 LEGNHF----VGEIPQSLSKCSSLKGLYLNNNNLS 661
           +  N         + ++  +  SL+ L+L  N LS
Sbjct: 218 VAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 50/356 (14%), Positives = 91/356 (25%), Gaps = 89/356 (25%)

Query: 321 ESMPSLKYLSLSGSTLGTNSSRILDQGLC-PLAHLQELYIDNNDLRGSLPWCLANT-TSL 378
           E + SL+ L+L+G  +      ++   L      L E+ + +  L  +    L       
Sbjct: 69  EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRA 128

Query: 379 RILDVSFNQLT----GSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAK 434
           R L +  N L       +    L     I  LRLSNN       +  L            
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT-AAGVAVL------------ 175

Query: 435 NNEINGEINESHSLTPKFQLKSLSLSSNY-GDSVTFPKFLYHQHELKEAELSHIKMIGEF 493
                        L     +  LSL     GD                     ++++   
Sbjct: 176 ----------MEGLAGNTSVTHLSLLHTGLGD-------------------EGLELLAA- 205

Query: 494 PNWLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 549
               L+ N +L+ L +  +      A         H  L  L +  N         + D+
Sbjct: 206 ---QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDL 262

Query: 550 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 609
             +                        +         ++           V L  +  + 
Sbjct: 263 GGAAE------------------GGARVVVSLTEGTAVS-------EYWSVILSEVQRNL 297

Query: 610 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC----SSLKGLYLNNNNLS 661
           NS      +R+     L    LE +      P   ++       ++ L     +  
Sbjct: 298 NSWDR---ARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 35/239 (14%), Positives = 66/239 (27%), Gaps = 40/239 (16%)

Query: 2   LDLSGNAFNNNVLSSLARL----SSLRSLYLSDNRLEGSIDVKEL-DSLRD---LEELDI 53
           L LS N      ++ L       +S+  L L    L G   ++ L   L     L+EL++
Sbjct: 160 LRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL-GDEGLELLAAQLDRNRQLQELNV 218

Query: 54  GGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQG 113
             N             L +                     +LE+L +  NE+ +      
Sbjct: 219 AYNGAG----DTAALAL-ARAAR--------------EHPSLELLHLYFNELSSEGRQVL 259

Query: 114 LERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLE 173
            +         ++ +               LS +      +     S D         L 
Sbjct: 260 RDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEV----QRNL---NSWDRARVQRHLELL 312

Query: 174 ELDINDNEIDNVEVSRGYRGLR---KLKSLDLSGVGIRD--GNKLLQSMGSFPSLNTLH 227
             D+ D+    +   R  + LR   ++++L           G+            +  H
Sbjct: 313 LRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGHHHHH 371

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 58.4 bits (140), Expect = 5e-09
 Identities = 33/195 (16%), Positives = 65/195 (33%), Gaps = 19/195 (9%)

Query: 170 SNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLE 229
               ++D  + EI  +E       L  +    L+ + I+  N L       P+L +L + 
Sbjct: 144 LFWGDIDFEEQEISWIEQVDLSPVLDAMP--LLNNLKIKGTNNLSIGKKPRPNLKSLEII 201

Query: 230 SNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLS 289
           S     ++       +  NLE L L            +    P                 
Sbjct: 202 SGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK------------- 248

Query: 290 GQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLC 349
                 F +L+ L +  A        + +  + +P L+ + +S   L    +R+L   + 
Sbjct: 249 ----DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD 304

Query: 350 PLAHLQELYIDNNDL 364
            + HL+ + +  N L
Sbjct: 305 KIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.3 bits (119), Expect = 2e-06
 Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 14/155 (9%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEG----SIDVKELDSLRDLE-------- 49
           L+       NN+        +L+SL +    L       I   +L +L  L         
Sbjct: 174 LNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDY 233

Query: 50  ELDIGGNKIDKFMVSKGLSKLKSLGLSGTGF--KGTFDVREFDSFNNLEVLDMSGNEIDN 107
             D   N             LK LG+              E D    LE +D+S   + +
Sbjct: 234 GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293

Query: 108 LVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVA 142
                 L+ + ++  LK ++++ N  ++ +   + 
Sbjct: 294 EGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.2 bits (116), Expect = 4e-06
 Identities = 30/224 (13%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 725 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 784
            + +N       EG F+        ++S+      +   +D +  L++L +   N     
Sbjct: 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQ-VDLSPVLDAMPLLNNLKIKGTNNLSIG 188

Query: 785 PIQLCRLNQLQLL--DLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQG 842
                 L  L+++   L D+ +  ++ S   N      Y                     
Sbjct: 189 KKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED---------------- 232

Query: 843 SVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGN---LTRIQTLN 899
                    F+         +       L  L +   +    +         L +++T++
Sbjct: 233 -------YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285

Query: 900 LSHNNLTGT----IPLTFSNLRHIESLDLSYNKLSGKIPRQLVD 939
           +S   LT      +      ++H++ +++ YN LS ++ ++L  
Sbjct: 286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.8 bits (115), Expect = 6e-06
 Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 19/175 (10%)

Query: 42  LDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDS--FNNLEVLD 99
           LD++  L  L I G         K    LKSL +  +G      V +       NLE L 
Sbjct: 168 LDAMPLLNNLKIKGTNNLSI-GKKPRPNLKSLEII-SGGLPDSVVEDILGSDLPNLEKLV 225

Query: 100 MSGNEIDNLVVPQGLERLS------RLSKLKKLDLRGNLCNNSILSSVAR---LSSLTSL 150
           +    +++      +          R   LK L +      N ++        L  L ++
Sbjct: 226 LYVG-VEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETM 284

Query: 151 HLSHNILQGSIDAKEF----DSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLD 201
            +S  +L     A+      D + +L+ +++  N + +       + L     + 
Sbjct: 285 DISAGVL-TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVS 338

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.0 bits (113), Expect = 9e-06
 Identities = 22/179 (12%), Positives = 60/179 (33%), Gaps = 15/179 (8%)

Query: 247 TNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 306
                +  ++  +       +  +  ++  L+    +    LS    P   +L+ L++  
Sbjct: 144 LFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPR-PNLKSLEIIS 202

Query: 307 ARIALNTSFLQIIGES-MPSLKYLSLSGST---LGTNSSRILDQGLCP--LAHLQELYID 360
             +    S ++ I  S +P+L+ L L              +           +L+ L I 
Sbjct: 203 GGL--PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV 260

Query: 361 NNDLRGSLPWCLANT---TSLRILDVSFNQLT---GSISSSPLVHLTSIEELRLSNNHF 413
           + + +  +      +     L  +D+S   LT     +    +  +  ++ + +  N+ 
Sbjct: 261 DAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 3e-05
 Identities = 32/215 (14%), Positives = 68/215 (31%), Gaps = 37/215 (17%)

Query: 459 LSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPF 518
           +  N      F    +   + +E E+S I+ +   P  +L+    L  L +         
Sbjct: 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP--VLDAMPLLNNLKI---KGTNNL 185

Query: 519 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGD-ILPSL----VYFNISMNALDGSIPS---- 569
            +       L+ L++ +      +  +I    LP+L    +Y  +     DG +      
Sbjct: 186 SIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245

Query: 570 -SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV--NLEFLSLSNNSLKGHIFSRIFSLRNL 626
            S      L++L + + +    + +      +   LE + +S   L              
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL-------------- 291

Query: 627 RWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS 661
                  +     +   + K   LK + +  N LS
Sbjct: 292 ------TDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.9 bits (105), Expect = 9e-05
 Identities = 30/198 (15%), Positives = 65/198 (32%), Gaps = 15/198 (7%)

Query: 93  NNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHL 152
                +D    EI  +        L  +  L  L ++     N++        +L SL +
Sbjct: 144 LFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIK---GTNNLSIGKKPRPNLKSLEI 200

Query: 153 SHNILQGSIDAKEFDS-LSNLEELDIN--------DNEIDNVEVSRGYRGLRKLKSLDLS 203
               L  S+      S L NLE+L +         D +++             LK L + 
Sbjct: 201 ISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV 260

Query: 204 GVGIRDGN-KLLQSMGSFPSLNTLHLESNNFTATLTTT--QELHNFTNLEYLTLDDSSLH 260
               ++   ++       P L T+ + +   T          +    +L+++ +  + L 
Sbjct: 261 DAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

Query: 261 ISLLQSIGSIFPSLKNLS 278
             + + +    P   ++S
Sbjct: 321 DEMKKELQKSLPMKIDVS 338

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 4e-08
 Identities = 73/478 (15%), Positives = 144/478 (30%), Gaps = 119/478 (24%)

Query: 429 KIFDAKNNEIN----GEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAEL 484
           K+    + +I        N   ++    Q     +  N+         +  +    +AEL
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 485 SHIKMIGEFPNWL--LENNTKLEFLYLVNDS-LAGPFRLPIHSHKRLRFLDVSNNNFQGH 541
             +     + N L  L N         V ++     F L        + L  +       
Sbjct: 235 RRLLKSKPYENCLLVLLN---------VQNAKAWNAFNL------SCKILLTTRF----- 274

Query: 542 IPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVN 601
              ++ D L +    +IS++    ++       + L++LD     L  E      +   N
Sbjct: 275 --KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE------VLTTN 326

Query: 602 LEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS--LKGLYLN--- 656
              LS+   S++  +           W  +  +     I  SL+       + ++     
Sbjct: 327 PRRLSIIAESIRDGL------ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 657 -NNNLSGKIPR------WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 709
              +    IP       W   +K    +V+           +  +  SL  ++      +
Sbjct: 381 FPPSA--HIPTILLSLIWFDVIKSDVMVVV----------NKLHKY-SL--VEKQPKEST 425

Query: 710 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL-----NGSIPDWI 764
            S+PS +  L +K  +     LH  + +               YN       +  IP ++
Sbjct: 426 ISIPSIYLELKVKLENEYA--LHRSIVD--------------HYNIPKTFDSDDLIPPYL 469

Query: 765 DG--LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF-DNTTLHESY 821
           D    S + H    H  L+     +   L ++  LD             F +    H+S 
Sbjct: 470 DQYFYSHIGH----H--LKNIEHPERMTLFRMVFLDFR-----------FLEQKIRHDST 512

Query: 822 NNNSSPD--------KPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 871
             N+S          K +K     + P+   E+ +  I +F  K        +   LL
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPK--YERLVNAILDFLPKIEENLICSKYTDLL 568

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 2e-07
 Identities = 74/441 (16%), Positives = 147/441 (33%), Gaps = 120/441 (27%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLR---SLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKI 58
           +D +  + +++  +   R+ S++      L     E  + V  L ++++ +         
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LLNVQNAKA-------W 259

Query: 59  DKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLS 118
           + F +S    K+    L  T FK   D     +  ++ +   S      L   +    L 
Sbjct: 260 NAFNLS---CKI----LLTTRFKQVTDFLSAATTTHISLDHHS----MTLTPDEVKSLLL 308

Query: 119 RLSKLKKLDLRGNLCNNS--ILSSV-ARLSSLTS-----LHLSHNILQGSIDAKEFDSLS 170
           +    +  DL   +   +   LS +   +    +      H++ + L   I++    SL+
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES----SLN 364

Query: 171 NLEELDINDN----EI--DNVEVSRGYRGLRKLKSL--DLSGVGIRD-GNKLLQSMGSFP 221
            LE  +         +   +  +         L  +  D+    +    NKL +      
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIP-----TILLSLIWFDVIKSDVMVVVNKLHKY----- 414

Query: 222 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTL-----DDSSLHISLLQSIGSIFPSLKN 276
           SL    +E     +T++    + +     YL L     ++ +LH S++      +   K 
Sbjct: 415 SL----VEKQPKESTIS----IPSI----YLELKVKLENEYALHRSIVDH----YNIPKT 458

Query: 277 LSMSGCEVNGVLSGQGFP----HFKSLEHLDM--RFARIALNTSFLQ--IIGESMPSLKY 328
                      L    +     H K++EH +    F  + L+  FL+  I  +S      
Sbjct: 459 FDSDDLIPP-YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA---- 513

Query: 329 LSLSGSTLGTNSSRILDQGLCPLAHLQEL-----YI-DN--------NDLRGSLPWC--- 371
            + SGS L T               LQ+L     YI DN        N +   LP     
Sbjct: 514 WNASGSILNT---------------LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558

Query: 372 LANTTSLRILDVSFNQLTGSI 392
           L  +    +L ++      +I
Sbjct: 559 LICSKYTDLLRIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 1e-05
 Identities = 49/330 (14%), Positives = 97/330 (29%), Gaps = 97/330 (29%)

Query: 749  LDLSYNYLNGSI------PDWIDGLSQLSHLNLAHNNLEGEVPIQLCR---LNQLQ--LL 797
            L ++Y +L   I      P  +     +   +  +N+ +      + R     +L+  LL
Sbjct: 87   LRINYKFLMSPIKTEQRQPS-MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 798  DLSDNN---LHGL---------IPSCFDNTTLHE--------SYNNNSSP---------- 827
            +L       + G+         +  C       +        +  N +SP          
Sbjct: 146  ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 828  ----DKPFKT----SFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVL------SLLAG 873
                D  + +    S +I     S++ ++  + +             VL           
Sbjct: 206  LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL----VLLNVQNAKAWNA 261

Query: 874  LDLSCNKLVGHIPPQIGNLTR-IQTLNLSHNNLTGTIPLTFSN--LRHIESLDLSYNKLS 930
             +LSC  L+          TR  Q  +      T  I L   +  L   E   L    L 
Sbjct: 262  FNLSCKILL---------TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 931  ---GKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICR 987
                 +PR+++  N   + I+A       I +  A +  +   + D              
Sbjct: 313  CRPQDLPREVLTTNPRRLSIIA-----ESIRDGLATWDNWKHVNCD-------------- 353

Query: 988  SLATMSEASTSNEGDDNLIDMDSFFITFTI 1017
             L T+ E+S +        +    F   ++
Sbjct: 354  KLTTIIESSLNVLEPA---EYRKMFDRLSV 380

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 21/132 (15%)

Query: 561 NALDGSIPSSFGNVIFLQFLDLSNNKLT---GEIPDHLAMCCVNLEFLSLSNNSLKGHIF 617
           N+L       F  +  L  L L  NKL      + + L     +L +L+LS N L+  + 
Sbjct: 38  NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL----TSLTYLNLSTNQLQS-LP 92

Query: 618 SRIF-SLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYLNNNNLSGKIPR-WLGN 670
           + +F  L  L+ L L  N       QSL      K + LK L L  N L   +P      
Sbjct: 93  NGVFDKLTQLKELALNTNQL-----QSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDR 146

Query: 671 LKGLQHIVMPKN 682
           L  LQ+I +  N
Sbjct: 147 LTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 38/159 (23%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           LDL  N+  +        L+SL  LYL  N+L+ S+     + L  L  L++  N     
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN----- 86

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
                  +L+SL               FD    L+ L ++ N++ +L  P G+    +L+
Sbjct: 87  -------QLQSL-----------PNGVFDKLTQLKELALNTNQLQSL--PDGV--FDKLT 124

Query: 122 KLKKLDLRGNLCNNSILSSV-----ARLSSLTSLHLSHN 155
           +LK L L  N      L SV      RL+SL  + L  N
Sbjct: 125 QLKDLRLYQNQ-----LKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 8/120 (6%)

Query: 718 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 776
           P     + L  N L   L  G F   +SL  L L  N L  S+P+ + + L+ L++LNL+
Sbjct: 27  PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84

Query: 777 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNN-NSSPDKPF 831
            N L+        +L QL+ L L+ N L  L    FD       L    N   S PD  F
Sbjct: 85  TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 18/114 (15%)

Query: 578 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHF 636
             L L++N+L     D L     +L  L L  N L G I    F    +++ L L  N  
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKI 90

Query: 637 VGEIPQSLS-----KCSSLKGLYLNNNNLSGKIPRWLG---NLKGLQHIVMPKN 682
                + +S         LK L L +N +S  +    G   +L  L  + +  N
Sbjct: 91  -----KEISNKMFLGLHQLKTLNLYDNQISC-VMP--GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 718 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 776
           PL   ++ L+ N L     +G F     LV L+L  N L   I     +G S +  L L 
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG 86

Query: 777 HNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGLIPSCFDN 814
            N ++ E+  ++   L+QL+ L+L DN +  ++P  F++
Sbjct: 87  ENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 17/115 (14%)

Query: 96  EVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-----ARLSSLTSL 150
             L ++ NE+  +    GL    RL  L KL+L+ N      L+ +        S +  L
Sbjct: 32  TELLLNDNELGRIS-SDGL--FGRLPHLVKLELKRN-----QLTGIEPNAFEGASHIQEL 83

Query: 151 HLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG-YRGLRKLKSLDLSG 204
            L  N ++  I  K F  L  L+ L++ DN+I    V  G +  L  L SL+L+ 
Sbjct: 84  QLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC--VMPGSFEHLNSLTSLNLAS 135

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 37/137 (27%)

Query: 24  RSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGT 83
             L L+DN L           L  L +L++  N            +L  +          
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRN------------QLTGI---------- 69

Query: 84  FDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVAR 143
            +   F+  ++++ L +  N+I  +     +     L +LK L+L  N      +S V  
Sbjct: 70  -EPNAFEGASHIQELQLGENKIKEI--SNKM--FLGLHQLKTLNLYDNQ-----ISCVMP 119

Query: 144 -----LSSLTSLHLSHN 155
                L+SLTSL+L+ N
Sbjct: 120 GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 692 FCRLDSLQILDISDNNISGSLPS-CFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTL 749
           F RL  L  L++  N ++  +    F   S I+++ L +N +  ++    F     L TL
Sbjct: 50  FGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTL 107

Query: 750 DLSYNYLNGSIPDWI-DGLSQLSHLNLAHN 778
           +L  N ++  +     + L+ L+ LNLA N
Sbjct: 108 NLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 15/106 (14%)

Query: 133 CNNSILSSV-ARL-SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 190
           C    L  +   +    T L L+ N L        F  L +L +L++  N++  +E    
Sbjct: 15  CTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNA 73

Query: 191 YRGLRKLKSLDLSGVGIRDGNKLLQSM--GSF---PSLNTLHLESN 231
           + G   ++ L L        NK ++ +    F     L TL+L  N
Sbjct: 74  FEGASHIQELQLG------ENK-IKEISNKMFLGLHQLKTLNLYDN 112

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 13/94 (13%)

Query: 571 FGNVIFLQFLDLSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRN 625
           FG +  L  L+L  N+LT  I     +       +++ L L  N +K  I +++F  L  
Sbjct: 50  FGRLPHLVKLELKRNQLT-GIEPNAFEGA----SHIQELQLGENKIK-EISNKMFLGLHQ 103

Query: 626 LRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNN 658
           L+ L L  N  +  +   S    +SL  L L +N
Sbjct: 104 LKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 13/99 (13%)

Query: 566 SIPSSFGNVIFLQFLDLSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSLKGHIFSRIF 621
            +P    N   L  +DLSNN+++  +      ++      L  L LS N L+  I  R F
Sbjct: 45  LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNM----TQLLTLILSYNRLRC-IPPRTF 98

Query: 622 -SLRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNN 658
             L++LR L L GN  +  +P+ + +  S+L  L +  N
Sbjct: 99  DGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 15/98 (15%)

Query: 88  EFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-----A 142
           E  ++ +L ++D+S N I  L         S +++L  L L  N      L  +      
Sbjct: 49  ELSNYKHLTLIDLSNNRISTL--SNQS--FSNMTQLLTLILSYNR-----LRCIPPRTFD 99

Query: 143 RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 180
            L SL  L L  N +   +    F+ LS L  L I  N
Sbjct: 100 GLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 15/113 (13%)

Query: 124 KKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 183
            +L L GN     +   ++    LT + LS+N +  ++  + F +++ L  L ++ N + 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR 91

Query: 184 NVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSM--GSF---PSLNTLHLESN 231
            +   R + GL+ L+ L L       GN  +  +  G+F    +L+ L + +N
Sbjct: 92  CIPP-RTFDGLKSLRLLSL------HGND-ISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 699 QILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 757
             L +  N  +  +P        +  + LS N +   L   +F N + L+TL LSYN L 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNRLR 91

Query: 758 GSIPDWI-DGLSQLSHLNLAHNNL 780
             IP    DGL  L  L+L  N++
Sbjct: 92  -CIPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 39/137 (28%)

Query: 24  RSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGT 83
             LYL  N+   ++  KEL + + L  +D+  N+I    +S                   
Sbjct: 34  TELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRIST--LSNQS---------------- 73

Query: 84  FDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV-- 141
                F +   L  L +S N +  +  P        L  L+ L L GN      +S V  
Sbjct: 74  -----FSNMTQLLTLILSYNRLRCI--PPRT--FDGLKSLRLLSLHGND-----ISVVPE 119

Query: 142 ---ARLSSLTSLHLSHN 155
                LS+L+ L +  N
Sbjct: 120 GAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 874 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 933
           L L  N+    +P ++ N   +  ++LS+N ++     +FSN+  + +L LSYN+L   I
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-I 93

Query: 934 PRQLVD-LNTLAIFIVAYNNLSGKIPE 959
           P +  D L +L +  +  N++S  +PE
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDIS-VVPE 119

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 29/130 (22%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           L L GN F   V   L+    L  + LS+NR+  ++  +   ++  L  L +  N     
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYN----- 88

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS 121
                  +L+ +             R FD   +L +L + GN+I    VP+G    + LS
Sbjct: 89  -------RLRCIP-----------PRTFDGLKSLRLLSLHGNDISV--VPEGA--FNDLS 126

Query: 122 KLKKLDLRGN 131
            L  L +  N
Sbjct: 127 ALSHLAIGAN 136

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 15/97 (15%)

Query: 89  FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVA-----R 143
           FD    L  L +S N+I +L  P G+    +L+KL  L L  N      L S+      +
Sbjct: 48  FDKLTQLTKLSLSQNQIQSL--PDGV--FDKLTKLTILYLHENK-----LQSLPNGVFDK 98

Query: 144 LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 180
           L+ L  L L  N L+ S+    FD L++L+++ ++ N
Sbjct: 99  LTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 35/115 (30%), Positives = 45/115 (39%), Gaps = 21/115 (18%)

Query: 578 QFLDLSNNKLTGEIP---DHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEG 633
             L+L +NKL        D L      L  LSLS N ++  +   +F  L  L  L L  
Sbjct: 31  TRLELESNKLQSLPHGVFDKL----TQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHE 85

Query: 634 NHFVGEIPQSLS-----KCSSLKGLYLNNNNLSGKIPR-WLGNLKGLQHIVMPKN 682
           N       QSL      K + LK L L+ N L   +P      L  LQ I +  N
Sbjct: 86  NKL-----QSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 15/95 (15%)

Query: 96  EVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVA-----RLSSLTSL 150
             L++  N++ +L  P G+    +L++L KL L  N      + S+      +L+ LT L
Sbjct: 31  TRLELESNKLQSL--PHGV--FDKLTQLTKLSLSQNQ-----IQSLPDGVFDKLTKLTIL 81

Query: 151 HLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNV 185
           +L  N LQ S+    FD L+ L+EL ++ N++ +V
Sbjct: 82  YLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSV 115

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 5/99 (5%)

Query: 718 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 776
           P S  ++ L  N L   L  G F   + L  L LS N +  S+PD + D L++L+ L L 
Sbjct: 27  PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH 84

Query: 777 HNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGLIPSCFDN 814
            N L+  +P  +  +L QL+ L L  N L  +    FD 
Sbjct: 85  ENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR 122

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 27/138 (19%)

Query: 324 PSLKYLSLSGSTLGTNSSRILDQGLCPLA-------HLQELYIDNNDLRGSLPWCLANT- 375
           P L+ ++L+      N   I    L   A       ++++  I        + + LA   
Sbjct: 36  PDLEEVNLN------NIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML 89

Query: 376 ---TSLRILDVSFNQLTG----SISSSPLVHLTSIEELRLSNNHFRIPVS-----LEPLF 423
               +L+ L+V  N ++G    ++  + L   TS+ ELR+ N    +  +        L 
Sbjct: 90  KVNNTLKSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQPLGNNVEMEIANMLE 148

Query: 424 NHSKLKIFDAKNNEINGE 441
            ++ L  F     +    
Sbjct: 149 KNTTLLKFGYHFTQQGPR 166

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 28/129 (21%)

Query: 4   LSGNAFNNNVLSSLAR-LSSLRSLYLSDNRLEGSIDVKELDSLR-DLEELDIGGNKIDKF 61
           L+  +     L  +   +  L SL LS+NRL    D+  +     +L+ L++ GN++   
Sbjct: 152 LNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLER---LS 118
              + L K+K L                     LE L + GN + +    Q         
Sbjct: 212 ---RELDKIKGL--------------------KLEELWLDGNSLCDTFRDQSTYISAIRE 248

Query: 119 RLSKLKKLD 127
           R  KL +LD
Sbjct: 249 RFPKLLRLD 257

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1066
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-20
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-12
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	5e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	8e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	8e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.0 bits (227), Expect = 1e-20
 Identities = 46/270 (17%), Positives = 98/270 (36%), Gaps = 15/270 (5%)

Query: 519 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 578
           ++P         LD+ NN        +  + L +L    +  N +    P +F  ++ L+
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 579 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 638
            L LS N+L  E+P+ +      L         ++  +F+   +   +  L        G
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNG-LNQMIVVELGTNPLKSSG 140

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 698
               +      L  + + + N++  IP+  G    L  + +  N +          L++L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 699 QILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 757
             L +S N+IS            ++++HL+ N L          +   +  + L  N ++
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHNNNIS 255

Query: 758 G------SIPDWIDGLSQLSHLNLAHNNLE 781
                    P +    +  S ++L  N ++
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.6 bits (218), Expect = 1e-19
 Identities = 46/294 (15%), Positives = 88/294 (29%), Gaps = 20/294 (6%)

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 698
           ++P+ L        L L NN ++        NLK L  +++  N +    P  F  L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 699 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 758
           + L +S N +   LP        +       +   +       N   +V L  +    +G
Sbjct: 82  ERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 759 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 818
                  G+ +LS++ +A  N+     I       L  L L  N +  +  +        
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 819 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 878
                + +           + P       + E+     K +           +  + L  
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPH------LRELHLNNNKLVKVPGGLADHKYIQVVYLHN 251

Query: 879 NKL------VGHIPPQIGNLTRIQTLNLSHNNLTGT--IPLTFSNLRHIESLDL 924
           N +          P           ++L  N +      P TF  +    ++ L
Sbjct: 252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.8 bits (216), Expect = 2e-19
 Identities = 57/281 (20%), Positives = 96/281 (34%), Gaps = 14/281 (4%)

Query: 548 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 607
           D+ P     ++  N +       F N+  L  L L NNK++   P   A   V LE L L
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYL 86

Query: 608 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW 667
           S N LK        +L+ LR    E       +   L++   ++ L  N    SG     
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGA 145

Query: 668 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 727
              +K L +I +   ++     +      SL  L +  N I+    +    L+       
Sbjct: 146 FQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 728 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG----- 782
                  +  G+  N   L  L L+ N L   +P  +     +  + L +NN+       
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 783 -EVPIQLCRLNQLQLLDLSDNNLH--GLIPSCFDNTTLHES 820
              P    +      + L  N +    + PS F    +  +
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 302

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.5 bits (192), Expect = 3e-16
 Identities = 55/270 (20%), Positives = 102/270 (37%), Gaps = 31/270 (11%)

Query: 577 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 636
           L+ +  S+  L  ++P  L     +   L L NN +         +L+NL  L+L  N  
Sbjct: 12  LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 637 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH-------------------- 676
               P + +    L+ LYL+ N L     +    L+ L+                     
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 677 ---IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG 733
              +        G     F  +  L  + I+D NI+ ++P    P S+ ++HL  N +  
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP-SLTELHLDGNKITK 185

Query: 734 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQ 793
                +    ++L  L LS+N ++      +     L  L+L +N L  +VP  L     
Sbjct: 186 VD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 243

Query: 794 LQLLDLSDNNLHGLIPSCFDNTTLHESYNN 823
           +Q++ L +NN+  +  + F     +    +
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTKKAS 273

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.8 bits (164), Expect = 1e-12
 Identities = 37/217 (17%), Positives = 63/217 (29%), Gaps = 9/217 (4%)

Query: 744 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 803
                LDL  N +          L  L  L L +N +    P     L +L+ L LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 804 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 863
           L  L             + N                   +    +         +     
Sbjct: 91  LKELPEKMPKTLQELRVHENE------ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144

Query: 864 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 923
             + +  L+ + ++   +   IP   G    +  L+L  N +T     +   L ++  L 
Sbjct: 145 AFQGMKKLSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 924 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 960
           LS+N +S      L +   L    +  N L       
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.4 bits (158), Expect = 8e-12
 Identities = 57/287 (19%), Positives = 97/287 (33%), Gaps = 34/287 (11%)

Query: 697 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 756
              +LD+ +N I+                         +K+G F N  +L TL L  N +
Sbjct: 32  DTALLDLQNNKITE------------------------IKDGDFKNLKNLHTLILINNKI 67

Query: 757 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 816
           +   P     L +L  L L+ N L+    +       LQ L + +N +  +  S F+   
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKE---LPEKMPKTLQELRVHENEITKVRKSVFNGLN 124

Query: 817 LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 876
                   ++P K              +    +     TT          +   L  L L
Sbjct: 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT------IPQGLPPSLTELHL 178

Query: 877 SCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ 936
             NK+       +  L  +  L LS N+++     + +N  H+  L L+ NKL  K+P  
Sbjct: 179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 237

Query: 937 LVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 983
           L D   + +  +  NN+S              K +      L   P+
Sbjct: 238 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.3 bits (129), Expect = 3e-08
 Identities = 50/293 (17%), Positives = 88/293 (30%), Gaps = 44/293 (15%)

Query: 324 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 383
           P    L L  + +    + I D     L +L  L + NN +    P   A    L  L +
Sbjct: 31  PDTALLDLQNNKI----TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 384 SFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEPLFNHSKLKIFDAKNNEINGE 441
           S NQL       P     +++ELR+  N            L     +++          E
Sbjct: 87  SKNQLK----ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142

Query: 442 INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN 501
                 +    +L  + ++                             I   P  L  + 
Sbjct: 143 NGAFQGMK---KLSYIRIADT--------------------------NITTIPQGLPPS- 172

Query: 502 TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 561
             L  L+L  + +       +     L  L +S N+             P L   +++ N
Sbjct: 173 --LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNN 229

Query: 562 ALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG 614
            L   +P    +  ++Q + L NN ++    +       N +  S S  SL  
Sbjct: 230 KLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.7 bits (125), Expect = 8e-08
 Identities = 49/282 (17%), Positives = 93/282 (32%), Gaps = 19/282 (6%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 60
           +LDL  N            L +L +L L +N++           L  LE L +  N++ +
Sbjct: 35  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYLSKNQLKE 93

Query: 61  FMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRL 120
               + + K                   F+  N + V+++  N + +  +  G       
Sbjct: 94  L--PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-----F 146

Query: 121 SKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 180
             +KKL        N          SLT LHL  N +           L+NL +L ++ N
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFN 205

Query: 181 EIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTA----T 236
            I  V+          L+ L L+   +         +     +  ++L +NN +A     
Sbjct: 206 SISAVDNGSLANT-PHLRELHLNNNKLVKV---PGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 237 LTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 278
                      +   ++L  + +    +Q   S F  +   +
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQP--STFRCVYVRA 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 51/301 (16%), Positives = 103/301 (34%), Gaps = 37/301 (12%)

Query: 133 CNNSILSSVAR--LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 190
           C++  L  V +        L L +N +   I   +F +L NL  L + +N+I  +     
Sbjct: 17  CSDLGLEKVPKDLPPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKIS-PGA 74

Query: 191 YRGLRKLKSLDLSGVGIRDGNKLLQ----------------SMGSFPSLNTLHLESNNFT 234
           +  L KL+ L LS   +++  + +                     F  LN + +      
Sbjct: 75  FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 134

Query: 235 ATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFP 294
              ++  E   F  ++ L+    +   ++      + PSL  L + G +    ++     
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIA-DTNITTIPQGLPPSLTELHLDGNK----ITKVDAA 189

Query: 295 HFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHL 354
             K L +L          ++       + P L+ L L+ + L          GL    ++
Sbjct: 190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-----GGLADHKYI 244

Query: 355 QELYIDNNDLRG------SLPWCLANTTSLRILDVSFNQLT-GSISSSPLVHLTSIEELR 407
           Q +Y+ NN++          P       S   + +  N +    I  S    +     ++
Sbjct: 245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304

Query: 408 L 408
           L
Sbjct: 305 L 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.8 bits (120), Expect = 3e-07
 Identities = 42/274 (15%), Positives = 92/274 (33%), Gaps = 22/274 (8%)

Query: 94  NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLS 153
           +  +LD+  N+I  +           L  L  L L  N  +     + A L  L  L+LS
Sbjct: 32  DTALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 154 HNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL 213
            N L+  +  K   +L  L   +    ++     +     L ++  ++L    ++     
Sbjct: 88  KNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNG----LNQMIVVELGTNPLKSSGIE 142

Query: 214 LQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPS 273
             +      L+ + +   N      TT       +L  L LD + +      S+  +   
Sbjct: 143 NGAFQGMKKLSYIRIADTNI-----TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNN- 196

Query: 274 LKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSG 333
           L  L +S   ++ V +G    +   L  L +   ++      L         ++ + L  
Sbjct: 197 LAKLGLSFNSISAVDNGS-LANTPHLRELHLNNNKLVKVPGGLA----DHKYIQVVYLHN 251

Query: 334 STLGT--NSSRILDQGLCPLAHLQELYIDNNDLR 365
           + +    ++           A    + + +N ++
Sbjct: 252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 2/88 (2%)

Query: 884 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 943
            +P  +        L+L +N +T      F NL+++ +L L  NK+S   P     L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 944 AIFIVAYNNLSGKIPEWTAQFATFNKSS 971
               ++ N L     +            
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHE 109

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 55/294 (18%), Positives = 85/294 (28%), Gaps = 49/294 (16%)

Query: 46  RDLEELDIGGNKIDKFMVS--KGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGN 103
            D   LD+  NKI +      K L  L +L L             F     LE L +S N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYLSKN 89

Query: 104 EIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGS-ID 162
           ++  L              L++L +  N       S    L+ +  + L  N L+ S I+
Sbjct: 90  QLKEL-------PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142

Query: 163 AKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPS 222
              F  +  L  + I D  I  +                                G  PS
Sbjct: 143 NGAFQGMKKLSYIRIADTNITTI------------------------------PQGLPPS 172

Query: 223 LNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGC 282
           L  LHL+ N       T  +  +   L  L     S +       GS+  +     +   
Sbjct: 173 LTELHLDGNKI-----TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 227

Query: 283 EVNGVLSGQGFPHFKSLEHLDM---RFARIALNTSFLQIIGESMPSLKYLSLSG 333
               V    G    K ++ + +     + I  N            S   +SL  
Sbjct: 228 NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.4 bits (225), Expect = 1e-20
 Identities = 49/259 (18%), Positives = 79/259 (30%), Gaps = 4/259 (1%)

Query: 548 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 607
            I  +     +  N +     +SF     L  L L +N L            +  +    
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 608 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW 667
            N  L+    +    L  L  L L+        P      ++L+ LYL +N L       
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 668 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 727
             +L  L H+ +  N +       F  L SL  L +  N ++   P  F  L        
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 728 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ 787
                  L         +L  L L+ N             + L     + + +   +P  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQ- 266

Query: 788 LCRLNQLQLLDLSDNNLHG 806
             RL    L  L+ N+L G
Sbjct: 267 --RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (188), Expect = 6e-16
 Identities = 56/294 (19%), Positives = 92/294 (31%), Gaps = 36/294 (12%)

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 698
            +P  +   ++ + ++L+ N +S          + L  + +  N L       F  L  L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 699 QILDISDNNISGSL-PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 757
           + LD+SDN    S+ P+ F+ L              +L  G F   ++L  L L  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 758 GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 817
               D    L  L+HL L  N +          L+ L  L L  N +  + P  F +  L
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--L 200

Query: 818 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 877
                     +           P  +                           L  L L+
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRA---------------------------LQYLRLN 233

Query: 878 CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 931
            N  V            +Q    S + +  ++P     L   +   L+ N L G
Sbjct: 234 DNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 9e-13
 Identities = 60/244 (24%), Positives = 83/244 (34%), Gaps = 4/244 (1%)

Query: 490 IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 549
           I   P         L  L+L ++ LA            L  LD+S+N     +       
Sbjct: 44  ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103

Query: 550 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 609
           L  L   ++    L    P  F  +  LQ+L L +N L     D       NL  L L  
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF-RDLGNLTHLFLHG 162

Query: 610 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 669
           N +          L +L  LLL  N      P +      L  LYL  NNLS      L 
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

Query: 670 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 729
            L+ LQ++ +  N               LQ    S + +  SLP       +K+  L+ N
Sbjct: 223 PLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCSLPQRLAGRDLKR--LAAN 279

Query: 730 MLHG 733
            L G
Sbjct: 280 DLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 5e-10
 Identities = 43/242 (17%), Positives = 73/242 (30%), Gaps = 7/242 (2%)

Query: 742 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 801
                VT       L  ++P  I   +    + L  N +             L +L L  
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 802 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 861
           N L  +  + F    L E  + + +         +  G         L +     + +  
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL---HTLHLDRCGLQELGP 122

Query: 862 AYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES 921
                + +L     L  N L         +L  +  L L  N ++      F  L  ++ 
Sbjct: 123 GLFRGLAALQYL-YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 922 LDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGL 981
           L L  N+++   P    DL  L    +  NNLS    E  A          + NP++C  
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 982 PL 983
             
Sbjct: 242 RA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 39/262 (14%), Positives = 77/262 (29%), Gaps = 34/262 (12%)

Query: 352 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQ------------------------ 387
           A  Q +++  N +            +L IL +  N                         
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 388 LTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHS 447
              S+  +    L  +  L L     +  +        + L+    ++N +    ++  +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDD--T 148

Query: 448 LTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFL 507
                 L  L L  N   SV    F    H L    L   ++    P+   +    +   
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 508 YLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI 567
              N+  A P    +   + L++L +++N +          +   L  F  S + +  S+
Sbjct: 208 LFANNLSALPTE-ALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSL 264

Query: 568 PSSFGNVIFLQFLDLSNNKLTG 589
           P             L+ N L G
Sbjct: 265 PQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 9e-07
 Identities = 55/281 (19%), Positives = 102/281 (36%), Gaps = 23/281 (8%)

Query: 110 VPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSL 169
           VP G+         +++ L GN  ++   +S     +LT L L  N+L     A      
Sbjct: 26  VPVGIPAA-----SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80

Query: 170 SNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLE 229
              +    ++ ++ +V+    + GL +L +L L   G+++            +L  L+L+
Sbjct: 81  LLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGP--GLFRGLAALQYLYLQ 137

Query: 230 SNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLS 289
            N   A    T    +  NL +L L  + +           F  L +L       N V  
Sbjct: 138 DNALQALPDDT--FRDLGNLTHLFLHGNRISSV----PERAFRGLHSLDRLLLHQNRVA- 190

Query: 290 GQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLC 349
                 F+ L  L   +      ++        + +L+YL L+      N      +   
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND-----NPWVCDCRARP 245

Query: 350 PLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTG 390
             A LQ+    ++++  SLP  LA      +  ++ N L G
Sbjct: 246 LWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 91.0 bits (224), Expect = 2e-20
 Identities = 66/290 (22%), Positives = 107/290 (36%), Gaps = 27/290 (9%)

Query: 524 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 583
              R+  LD+S  N     P                       IPSS  N+ +L FL + 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYP-----------------------IPSSLANLPYLNFLYIG 84

Query: 584 NNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 643
                             L +L +++ ++ G I   +  ++ L  L    N   G +P S
Sbjct: 85  GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144

Query: 644 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 703
           +S   +L G+  + N +SG IP   G+   L   +    +             +L  +D+
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204

Query: 704 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 763
           S N + G     F      Q              G      +L  LDL  N + G++P  
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263

Query: 764 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN-LHGL-IPSC 811
           +  L  L  LN++ NNL GE+P Q   L +  +   ++N  L G  +P+C
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 84.4 bits (207), Expect = 4e-18
 Identities = 56/292 (19%), Positives = 107/292 (36%), Gaps = 34/292 (11%)

Query: 698 LQILDISDNNISG--SLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 754
           +  LD+S  N+     +PS    L  +  +++                 + L  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 755 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 814
            ++G+IPD++  +  L  L+ ++N L G +P  +  L  L  +    N + G IP     
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS--- 168

Query: 815 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 874
              + S++   +     +   +   P       +  +          A            
Sbjct: 169 ---YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 875 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 934
                  +     ++G    +  L+L +N + GT+P   + L+ + SL++S+N       
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN------- 278

Query: 935 RQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPIC 986
                            NL G+IP+       F+ S+Y  N  LCG PLP C
Sbjct: 279 -----------------NLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 78.3 bits (191), Expect = 4e-16
 Identities = 62/293 (21%), Positives = 100/293 (34%), Gaps = 34/293 (11%)

Query: 645 SKCSSLKGLYLNNNNLSGK--IPRWLGNLKGLQHIVMPKNH-LEGPIPVEFCRLDSLQIL 701
           ++   +  L L+  NL     IP  L NL  L  + +   + L GPIP    +L  L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 702 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 761
            I+  N+SG++P     +                   +  +  +LV +    N ++G+IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 762 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESY 821
           D     S+L        N              L  +DLS N L G     F +    +  
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 822 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 881
           +   +          +S     +                              DL  N++
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGL------------------------------DLRNNRI 256

Query: 882 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 934
            G +P  +  L  + +LN+S NNL G IP    NL+  +    + NK     P
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.5 bits (158), Expect = 7e-12
 Identities = 47/281 (16%), Positives = 90/281 (32%), Gaps = 13/281 (4%)

Query: 371 CLANTTSLRI--LDVSFNQLTGSISSSP-LVHLTSIEELRLSNNHFRIPVSLEPLFNHSK 427
           C  +T + R+  LD+S   L         L +L  +  L +   +  +      +   ++
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 428 LKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHI 487
           L      +  ++G I +  S          S ++      T P  +     L        
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS---GTLPPSISSLPNLVGITFDGN 159

Query: 488 KMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIG 547
           ++ G  P+     +     + +  + L G       +          N        +   
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 548 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 607
           D     ++   +  A D        N+     LDL NN++ G +P  L      L  L++
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNL---NGLDLRNNRIYGTLPQGLT-QLKFLHSLNV 275

Query: 608 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCS 648
           S N+L G I  +  +L+         N  +   P  L  C+
Sbjct: 276 SFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP--LPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 61.7 bits (148), Expect = 1e-10
 Identities = 57/277 (20%), Positives = 91/277 (32%), Gaps = 5/277 (1%)

Query: 417 VSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQ 476
           V  +      ++   D     +        SL     L  L +          P  +   
Sbjct: 41  VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100

Query: 477 HELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNN 536
            +L    ++H  + G  P++L +  T +   +  N +L+G     I S   L  +    N
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGN 159

Query: 537 NFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLA 596
              G IP   G          IS N L G IP +F N+         N           +
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 597 MCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN 656
                         +       ++   +NL  L L  N   G +PQ L++   L  L ++
Sbjct: 220 DKNTQKIH---LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 657 NNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFC 693
            NNL G+IP+  GNL+         N      P+  C
Sbjct: 277 FNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.1 bits (110), Expect = 6e-06
 Identities = 57/276 (20%), Positives = 93/276 (33%), Gaps = 17/276 (6%)

Query: 139 SSVARLSSLTSLHLSHNILQGSID-AKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKL 197
            +  +   + +L LS   L           +L  L  L I         +      L +L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 198 KSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDS 257
             L ++   +         +    +L TL    N  +   T    + +  NL  +T D +
Sbjct: 104 HYLYITHTNVSGAIP--DFLSQIKTLVTLDFSYNALSG--TLPPSISSLPNLVGITFDGN 159

Query: 258 SLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQ 317
            +  ++  S GS       L  S       L+G+  P F +L    +  +R  L      
Sbjct: 160 RISGAIPDSYGSFS----KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215

Query: 318 IIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS 377
           + G    + K        L  NS       +    +L  L + NN + G+LP  L     
Sbjct: 216 LFGSDKNTQKI------HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 378 LRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 413
           L  L+VSFN L G I      +L   +    +NN  
Sbjct: 270 LHSLNVSFNNLCGEIPQGG--NLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.1 bits (105), Expect = 3e-05
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 3   DLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNK 57
           DL  N     +   L +L  L SL +S N L G I   +  +L+  +      NK
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI--PQGGNLQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 41.7 bits (96), Expect = 3e-04
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 127 DLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 180
           DLR N    ++   + +L  L SL++S N L G I   +  +L   +     +N
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI--PQGGNLQRFDVSAYANN 301

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 90.4 bits (223), Expect = 8e-20
 Identities = 63/361 (17%), Positives = 119/361 (32%), Gaps = 25/361 (6%)

Query: 351 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 410
           L  +  L  D   ++ S+   +    +L  ++ S NQLT       L  L  I       
Sbjct: 43  LDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100

Query: 411 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 470
                  +L  L   +         + +    N +        +  +S  S         
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 471 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEF-----LYLVNDSLAGPFRLPIHSH 525
                      A L+ ++ +    N + + +   +      L   N+ ++     P+   
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT--PLGIL 218

Query: 526 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 585
             L  L ++ N  +    +     L +L   +++ N +    P     +  L  L L  N
Sbjct: 219 TNLDELSLNGNQLKDIGTLA---SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 273

Query: 586 KLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 645
           +++   P        NLE      N  +    S I +L+NL +L L  N+     P  +S
Sbjct: 274 QISNISPLAGLTALTNLEL-----NENQLEDISPISNLKNLTYLTLYFNNISDISP--VS 326

Query: 646 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 705
             + L+ L+  NN +S      L NL  +  +    N +    P     L  +  L ++D
Sbjct: 327 SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 382

Query: 706 N 706
            
Sbjct: 383 Q 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 87.0 bits (214), Expect = 1e-18
 Identities = 61/386 (15%), Positives = 115/386 (29%), Gaps = 43/386 (11%)

Query: 580 LDLSNNKLTGEIP-DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 638
             L    +T  +    L      +  L      +K      +  L NL  +    N    
Sbjct: 27  TVLGKTNVTDTVSQTDLD----QVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTD 80

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRW------LGNLKGLQHIVMPKNHLEGPIPVEF 692
             P  L   + L  + +NNN ++   P           L   Q   +        +    
Sbjct: 81  ITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 138

Query: 693 CRLDSLQILDISDNNISGSLPSCFYPLSI-------KQVHLSKNMLHGQLKEGTFFNCSS 745
              +++  +       S    S    ++          +       +           ++
Sbjct: 139 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 198

Query: 746 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 805
           L +L  + N ++   P  I   + L  L+L  N L+      L  L  L  LDL++N + 
Sbjct: 199 LESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 254

Query: 806 GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 865
            L P              N   +       +                E     +      
Sbjct: 255 NLAPLSGLTKLTELKLGANQISNISPLAGLTAL-----------TNLELNENQLEDISPI 303

Query: 866 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLS 925
             L  L  L L  N +    P  + +LT++Q L  ++N ++     + +NL +I  L   
Sbjct: 304 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 926 YNKLSGKIPRQLVDLNTLAIFIVAYN 951
           +N++S   P  L +L  +    +   
Sbjct: 360 HNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 81.6 bits (200), Expect = 8e-17
 Identities = 75/409 (18%), Positives = 137/409 (33%), Gaps = 64/409 (15%)

Query: 531 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 590
             +   N    +     D + +L    + + ++DG        +  L  ++ SNN+LT  
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDI 81

Query: 591 IP------------DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 638
            P            ++  +  +       +   L                  L       
Sbjct: 82  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 698
                +S  S L  L   +        + L NL  L+ + +  N           +L +L
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK--VSDISVLAKLTNL 199

Query: 699 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 758
           + L  ++N IS   P      ++ ++ L+ N L      GT  + ++L  LDL+ N ++ 
Sbjct: 200 ESLIATNNQISDITPLGILT-NLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISN 255

Query: 759 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 818
             P  + GL++L+ L L  N +    P+          L+ +       I +  + T L 
Sbjct: 256 LAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT 313

Query: 819 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 878
             +NN                        I +I   ++           L+ L  L  + 
Sbjct: 314 LYFNN------------------------ISDISPVSS-----------LTKLQRLFFAN 338

Query: 879 NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 927
           NK+       + NLT I  L+  HN ++   PL  +NL  I  L L+  
Sbjct: 339 NKVSD--VSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.4 bits (197), Expect = 2e-16
 Identities = 61/400 (15%), Positives = 139/400 (34%), Gaps = 38/400 (9%)

Query: 167 DSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTL 226
            +L+   +  +    + +         L ++ +L    +GI+     +  +    +L  +
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGIKS----IDGVEYLNNLTQI 71

Query: 227 HLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHI----SLLQSIGSIFPSLKNLSMSGC 282
           +  +N     LT    L N T L  + ++++ +      + L ++  +      ++    
Sbjct: 72  NFSNNQ----LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 127

Query: 283 EVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSR 342
             N     +      ++  +       +L           +  L  L+       +++  
Sbjct: 128 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 187

Query: 343 ILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS 402
                L  L +L+ L   NN +    P      T+L  L ++ NQL        L  LT+
Sbjct: 188 SDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD---IGTLASLTN 242

Query: 403 IEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSN 462
           + +L L+NN      +L PL   +KL       N+I+        ++P   L +L+    
Sbjct: 243 LTDLDLANNQIS---NLAPLSGLTKLTELKLGANQISN-------ISPLAGLTALTNLEL 292

Query: 463 YGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPI 522
             + +     + +   L    L    +    P   + + TKL+ L+  N+ ++      +
Sbjct: 293 NENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSDVS--SL 347

Query: 523 HSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNA 562
            +   + +L   +N      P+     L  +    ++  A
Sbjct: 348 ANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.3 bits (176), Expect = 7e-14
 Identities = 75/403 (18%), Positives = 142/403 (35%), Gaps = 65/403 (16%)

Query: 16  SLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGL 75
           S   L  + +L      ++    +  ++ L +L +++   N++      K L+KL  + +
Sbjct: 39  SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILM 95

Query: 76  SGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLE-------RLSRLSKLKKLDL 128
           +         +    +   L + +    +ID L     L         +S +S L  L  
Sbjct: 96  NNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS 155

Query: 129 RGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVS 188
              L   + ++ +  L++LT+L           D      L+NLE L   +N+I ++   
Sbjct: 156 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT-- 213

Query: 189 RGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTN 248
                L  L  L L+G  ++D    + ++ S  +L  L L +N     ++    L   T 
Sbjct: 214 -PLGILTNLDELSLNGNQLKD----IGTLASLTNLTDLDLANNQ----ISNLAPLSGLTK 264

Query: 249 LEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFAR 308
           L  L L  + +                                       L    +    
Sbjct: 265 LTELKLGANQIS-------------------------------NISPLAGLTA--LTNLE 291

Query: 309 IALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSL 368
           +  N         ++ +L YL+L  + +   S       +  L  LQ L+  NN +    
Sbjct: 292 LNENQLEDISPISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFANNKVSD-- 343

Query: 369 PWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 411
              LAN T++  L    NQ++      PL +LT I +L L++ 
Sbjct: 344 VSSLANLTNINWLSAGHNQISDLT---PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.9 bits (167), Expect = 9e-13
 Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 19/180 (10%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 60
            L L+GN   +  + +LA L++L  L L++N++     +  L  L    EL +G N+I  
Sbjct: 223 ELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKL---TELKLGANQISN 277

Query: 61  FMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRL 120
                 L+ L +L           D+    +  NL  L +  N I        +  +S L
Sbjct: 278 IS---PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI------SDISPVSSL 328

Query: 121 SKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 180
           +KL++L    N    S +SS+A L+++  L   HN +          +L+ + +L +ND 
Sbjct: 329 TKLQRLFFANN--KVSDVSSLANLTNINWLSAGHNQISDLT---PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.3 bits (150), Expect = 1e-10
 Identities = 68/370 (18%), Positives = 125/370 (33%), Gaps = 50/370 (13%)

Query: 117 LSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELD 176
            + L ++  L           +  V  L++LT ++ S+N L          +L+ L ++ 
Sbjct: 40  QTDLDQVTTLQADRL--GIKSIDGVEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDIL 94

Query: 177 INDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTAT 236
           +N+N+I ++        L  L   +     I     L        S NT+   S     T
Sbjct: 95  MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 154

Query: 237 LTTTQELHNFTN----LEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQG 292
                   N       L  LT  +     S   S  S+   L NL       N +     
Sbjct: 155 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 214

Query: 293 FPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLA 352
                +L+ L +   ++    +       S+ +L  L L+ + +   +       L  L 
Sbjct: 215 LGILTNLDELSLNGNQLKDIGTL-----ASLTNLTDLDLANNQISNLAP------LSGLT 263

Query: 353 HLQELYIDNNDLRGSLP--------------------WCLANTTSLRILDVSFNQLTGSI 392
            L EL +  N +    P                      ++N  +L  L + FN ++   
Sbjct: 264 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 323

Query: 393 SSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF 452
              P+  LT ++ L  +NN      SL  L   + +    A +N+I+     ++ LT   
Sbjct: 324 ---PVSSLTKLQRLFFANNKVSDVSSLANL---TNINWLSAGHNQISDLTPLAN-LT--- 373

Query: 453 QLKSLSLSSN 462
           ++  L L+  
Sbjct: 374 RITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.8 bits (146), Expect = 3e-10
 Identities = 52/358 (14%), Positives = 110/358 (30%), Gaps = 39/358 (10%)

Query: 273 SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLS 332
            +  L        G+ S  G  +  +L  ++    ++   T       +++  L  + ++
Sbjct: 45  QVTTLQADR---LGIKSIDGVEYLNNLTQINFSNNQLTDITPL-----KNLTKLVDILMN 96

Query: 333 GSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSI 392
            + +   +       L  L        D + L+          +S  I D+S      S+
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 393 SSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF 452
                 +  +  +   +              +   +         +    N+   +TP  
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG 216

Query: 453 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND 512
            L +L   S  G+ +     L     L + +L++ ++    P   L   TKL  L L  +
Sbjct: 217 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGAN 273

Query: 513 SLAGPFRLPIHSHKR--------------------LRFLDVSNNNFQGHIPVEIGDILPS 552
            ++    L   +                       L +L +  NN     PV     L  
Sbjct: 274 QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS---SLTK 330

Query: 553 LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 610
           L     + N +  S  SS  N+  + +L   +N+++   P         +  L L++ 
Sbjct: 331 LQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQ 383

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (159), Expect = 4e-12
 Identities = 45/294 (15%), Positives = 90/294 (30%), Gaps = 22/294 (7%)

Query: 531 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 590
           LD++  N    +   +  +   ++ F    + +D  +   F     +Q +DLSN+ +   
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVIEVS 61

Query: 591 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSL 650
               +   C  L+ LSL    L   I + +    NL  L L G     E        S  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 651 KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG 710
           +   LN +       + +          + + +L G                      S 
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK---------------SD 166

Query: 711 SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY-NYLNGSIPDWIDGLSQ 769
                    ++  + LS +++        FF  + L  L LS    +       +  +  
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 770 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN 823
           L  L +     +G + +       L  L ++ ++   +      N    E +  
Sbjct: 227 LKTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGNKKNQEIWGI 277

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 1e-09
 Identities = 46/277 (16%), Positives = 94/277 (33%), Gaps = 9/277 (3%)

Query: 675 QHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQ 734
           Q + +   +L   +         +       + +   L   F P  ++ + LS +++   
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 735 LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQL 794
              G    CS L  L L    L+  I + +   S L  LNL+  +   E  +Q    +  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 795 QLLDLSDNNLHGLIPSCFDNTTLHESYNNN----SSPDKPFKTSFSISGPQGSVEKKILE 850
           +L +L+ +               H S        S   K  + S   +  +       L+
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 851 IFEFTTKNIAYAYQGRVLSLLAGLDLS-CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI 909
           + +          +   L+ L  L LS C  ++     ++G +  ++TL +      GT+
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 910 PLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIF 946
            L    L H   L ++ +  +      + +     I+
Sbjct: 242 QLLKEALPH---LQINCSHFTTIARPTIGNKKNQEIW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 3e-08
 Identities = 39/268 (14%), Positives = 96/268 (35%), Gaps = 10/268 (3%)

Query: 124 KKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 183
           + LDL G   +  +   +     + +     + +   +   E  S   ++ +D++++ I+
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNSVIE 59

Query: 184 NVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQEL 243
              +        KL++L L G+ + D   ++ ++    +L  L+L   +  +       L
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117

Query: 244 HNFTNLEYLTLD--DSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEH 301
            + + L+ L L          +  ++  +  ++  L++SG   N   S       +    
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 177

Query: 302 LDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDN 361
           + +  +   +  +        +  L++LSLS        +      L  +  L+ L +  
Sbjct: 178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET---LLELGEIPTLKTLQVFG 234

Query: 362 NDLRGSLPWCLANTTSLRILDVSFNQLT 389
               G+L         L+I    F  + 
Sbjct: 235 IVPDGTLQLLKEALPHLQINCSHFTTIA 262

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 3e-06
 Identities = 43/275 (15%), Positives = 89/275 (32%), Gaps = 17/275 (6%)

Query: 406 LRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGD 465
           L L+  +   P     L +   +  F    + ++  + E  S     +++ + LS++  +
Sbjct: 5   LDLTGKNLH-PDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPF---RVQHMDLSNSVIE 59

Query: 466 SVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSH 525
             T    L    +L+   L  +++     N  L  N+ L  L L   S    F L     
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 526 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYF-------NISMNALDGSIPSSFGNVIFLQ 578
              R  +++ +         +   +  +              N     + +       L 
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 579 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN-NSLKGHIFSRIFSLRNLRWLLLEGNHFV 637
            LDLS++ +              L+ LSLS    +       +  +  L+ L + G    
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238

Query: 638 GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK 672
           G +         L+   +N ++ +      +GN K
Sbjct: 239 GTLQLLKEALPHLQ---INCSHFTTIARPTIGNKK 270

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 9e-06
 Identities = 35/255 (13%), Positives = 75/255 (29%), Gaps = 12/255 (4%)

Query: 483 ELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHI 542
           +L+   +  +    LL               +  P      S  R++ +D+SN+  +   
Sbjct: 6   DLTGKNLHPDVTGRLLSQGVIA--FRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVST 62

Query: 543 PVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDL-SNNKLTGEIPDHLAMCCVN 601
              I      L   ++    L   I ++      L  L+L   +  +      L   C  
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 602 LEFLSLSNNSLKGHIFSRIFSLRNLRW-------LLLEGNHFVGEIPQSLSKCSSLKGLY 654
           L+ L+LS          ++                  +               + +    
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 655 LNNNNLSGKIPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDNNISGSLP 713
            ++  L     +    L  LQH+ + +   +     +E   + +L+ L +      G+L 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 714 SCFYPLSIKQVHLSK 728
                L   Q++ S 
Sbjct: 243 LLKEALPHLQINCSH 257

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 49/286 (17%), Positives = 93/286 (32%), Gaps = 19/286 (6%)

Query: 98  LDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNIL 157
           LD++G  +   V  + L +     +            +  L+       +  + LS++++
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRC------PRSFMDQPLAEHFSPFRVQHMDLSNSVI 58

Query: 158 QGSIDAKEFDSLSNLEELDINDNEIDNVEVS--RGYRGLRKLKSLDLSGVGIRDGNKLLQ 215
           + S         S L+ L +    + +  V+       L +L     SG        LL 
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 216 SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLK 275
           S      LN                  +        L+    +L  S L ++    P+L 
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 276 NLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGST 335
           +L +S   +      Q F     L+HL +      +  + L++    +P+LK L + G  
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL--GEIPTLKTLQVFGI- 235

Query: 336 LGTNSSRILDQGLCPLAH-LQELYIDNNDLRGSLPWCLANTTSLRI 380
                  + D  L  L   L  L I+ +         + N  +  I
Sbjct: 236 -------VPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 8e-05
 Identities = 47/236 (19%), Positives = 91/236 (38%), Gaps = 9/236 (3%)

Query: 51  LDIGGNKIDKFMVSKGLSK-LKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLV 109
           LD+ G  +   +  + LS+ + +     +       + E  S   ++ +D+S + I+   
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNSVIEVST 62

Query: 110 VPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNI-LQGSIDAKEFDS 168
           +      LS+ SKL+ L L G   ++ I++++A+ S+L  L+LS               S
Sbjct: 63  LH---GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 169 LSNLEELDINDNEIDNVEVSRGY--RGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTL 226
            S L+EL+++       +  +         +  L+LSG         L ++         
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 227 HLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGC 282
              S++        QE      L++L+L      I          P+LK L + G 
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (156), Expect = 2e-11
 Identities = 63/446 (14%), Positives = 117/446 (26%), Gaps = 33/446 (7%)

Query: 528 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG----SIPSSFGNVIFLQFLDLS 583
           ++ LD+           E+  +L       +    L       I S+      L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 584 NNKLTGE----IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 639
           +N+L       +   L      ++ LSL N  L G     + S       L E +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 640 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 699
           +  +  +      L         ++     +    + +            +     D  +
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 700 ILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 759
                        P     L ++   ++ +                 + L  +     G 
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 760 IPDWIDGLSQLSHLNL-------AHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 812
                  L   S L               G++   L     L+ L L+ N L        
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 813 DNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG------- 865
             T L       S   K    + +      SV  +   + E    N      G       
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 866 --RVLSLLAGLDLSCNKL----VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS----- 914
             +  S+L  L L+   +       +   +     ++ L+LS+N L     L        
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 915 NLRHIESLDLSYNKLSGKIPRQLVDL 940
               +E L L     S ++  +L  L
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (154), Expect = 3e-11
 Identities = 55/451 (12%), Positives = 121/451 (26%), Gaps = 22/451 (4%)

Query: 375 TTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR---IPVSLEPLFNHSKLKIF 431
           +  ++ LD+   +L+ +  +  L  L   + +RL +              L  +  L   
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 432 DAKNNEINGEINESHS---LTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIK 488
           + ++NE+             TP  +++ LSL +                 L         
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL------PTL 114

Query: 489 MIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD 548
                 + LL +         + D      +L +              +     P     
Sbjct: 115 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 174

Query: 549 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS 608
            + +       +  L   +  S   +  L+                +     +L  L+L 
Sbjct: 175 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 234

Query: 609 NNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWL 668
           +N L     + +          L           +       + L    +     +    
Sbjct: 235 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 294

Query: 669 GNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 728
              +G + +          +   + +  S      S  + S    + F        +  +
Sbjct: 295 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS-SVLAQNRFLLELQISNNRLE 353

Query: 729 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNG----SIPDWIDGLSQLSHLNLAHNNLEGEV 784
           +    +L +G     S L  L L+   ++     S+   +     L  L+L++N L    
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 785 PIQLCR-----LNQLQLLDLSDNNLHGLIPS 810
            +QL          L+ L L D      +  
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (134), Expect = 1e-08
 Identities = 54/462 (11%), Positives = 118/462 (25%), Gaps = 30/462 (6%)

Query: 325 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRG----SLPWCLANTTSLRI 380
            ++ L +    L   S     + L  L   Q + +D+  L       +   L    +L  
Sbjct: 3   DIQSLDIQCEEL---SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 381 LDVSFNQLTG----SISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 436
           L++  N+L       +          I++L L N                 +     +  
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT--------GAGCGVLSSTLRTL 111

Query: 437 EINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNW 496
               E++ S +L     L+ L               L +      +      ++   P++
Sbjct: 112 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 171

Query: 497 LLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 556
                +  +        L    +      + L+       +        I     SL   
Sbjct: 172 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 231

Query: 557 NISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI 616
            +  N L     +     +      L    +            +     +  +       
Sbjct: 232 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 291

Query: 617 FSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 676
            + +                       +  CS        ++  S            + +
Sbjct: 292 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA--ACCSHFSSVLAQNRFLLELQISN 349

Query: 677 IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG----SLPSCFYPL-SIKQVHLSKNML 731
             +    +             L++L ++D ++S     SL +      S++++ LS N L
Sbjct: 350 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

Query: 732 HGQ----LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 769
                  L E        L  L L   Y +  + D +  L +
Sbjct: 410 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 1e-06
 Identities = 51/448 (11%), Positives = 117/448 (26%), Gaps = 23/448 (5%)

Query: 248 NLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLS---GQGFPHFKSLEHLDM 304
           +++ L +    L  +    +  +    + + +  C +                +L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 305 RFARI--ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN 362
           R   +        LQ +      ++ LSL    L      +L   L  L  LQEL++ +N
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 363 DLRGSLPW-CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP 421
            L  +            +           S+S++    L S+   +       +  +   
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 422 LFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKE 481
                 L      +      +            + L        S+       ++     
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 482 AELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGH 541
                  ++            +          L    R      +     +   +     
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 542 IPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV- 600
           +   + +    L    +   +   +  S F +V+      L        + D        
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 601 -------NLEFLSLSNNSLKG----HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSK--- 646
                   L  L L++  +       + + + +  +LR L L  N         L +   
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 647 --CSSLKGLYLNNNNLSGKIPRWLGNLK 672
                L+ L L +   S ++   L  L+
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 3e-06
 Identities = 57/475 (12%), Positives = 113/475 (23%), Gaps = 48/475 (10%)

Query: 171 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLES 230
           +++ LDI   E+ +   +     L++ + + L   G+ +            S        
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTE-----ARCKDISSA------- 50

Query: 231 NNFTATLTTTQELHNFTNLEYLTLDDSSLH----ISLLQSIGSIFPSLKNLSMSGCEVNG 286
                       L     L  L L  + L       +LQ + +    ++ LS+  C + G
Sbjct: 51  ------------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

Query: 287 VLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQ 346
              G      ++L  L         +        + +                    L  
Sbjct: 99  AGCGVLSSTLRTLPTLQELHLS---DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 155

Query: 347 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 406
             C           +          +       +     +      +        + +  
Sbjct: 156 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 215

Query: 407 RLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDS 466
           R          SL  L   S             G ++ S  L   +  +    +   GD 
Sbjct: 216 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 275

Query: 467 VTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHK 526
               +      EL  A               L           V             S  
Sbjct: 276 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 335

Query: 527 RLRFLDVSNNNFQGHIPVEIGDI---------LPSLVYFNISMNALDG----SIPSSFGN 573
             +   +       +   + G              L    ++   +      S+ ++   
Sbjct: 336 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 395

Query: 574 VIFLQFLDLSNNKLTGE----IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR 624
              L+ LDLSNN L       + + +      LE L L +      +  R+ +L 
Sbjct: 396 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 1e-05
 Identities = 62/463 (13%), Positives = 128/463 (27%), Gaps = 42/463 (9%)

Query: 273 SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE---SMPSLKYL 329
            +++L +   E++     +  P  +  + + +    +    +  + I       P+L  L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL--TEARCKDISSALRVNPALAEL 60

Query: 330 SLSGSTLGTNSSRILDQGL-CPLAHLQELYIDNNDLR----GSLPWCLANTTSLRILDVS 384
           +L  + LG      + QGL  P   +Q+L + N  L     G L   L    +L+ L +S
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 385 FNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINE 444
            N L  +        L   +            +S       + +        E+    N+
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 445 SHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKL 504
            +    +   + L  S    +++            ++               L  N    
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 505 EFL-YLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 563
             +  L    L    RL                +    +  +      SL    +     
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 564 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLA--------MCCVNLEFLSLSNNSLKGH 615
                +       L+ L + +   T     H +        +  + +    L +  ++  
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 616 IFSRIFSLRNLRWLLLEGNHFVGE----IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 671
                     LR L L            +  +L    SL+ L L+NN L       L  +
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL--V 418

Query: 672 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 714
           + ++                      L+ L + D   S  +  
Sbjct: 419 ESVRQ-----------------PGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 6e-05
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 12/100 (12%)

Query: 321 ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLA-----NT 375
           +    L+ L L+   +  +S   L   L     L+EL + NN L  +    L        
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 376 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRI 415
             L  L +     +  +          ++ L       R+
Sbjct: 426 CLLEQLVLYDIYWSEEMED-------RLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 1e-04
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 11/95 (11%)

Query: 94  NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN----LCNNSILSSVARLSSLTS 149
           +++ LD+   E+ +       E L  L + + + L            I S++    +L  
Sbjct: 3   DIQSLDIQCEELSDARWA---ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 150 LHLSHNILQGSIDAKEFDSLS----NLEELDINDN 180
           L+L  N L           L      +++L + + 
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 2e-04
 Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 5/94 (5%)

Query: 89  FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVAR----- 143
               + L VL ++  ++ +         L     L++LDL  N   ++ +  +       
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 144 LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDI 177
              L  L L        ++ +      +   L +
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 5e-04
 Identities = 41/433 (9%), Positives = 90/433 (20%), Gaps = 21/433 (4%)

Query: 552 SLVYFNISMNAL-DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC---CVNLEFLSL 607
            +   +I    L D         +   Q + L +  LT      ++        L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 608 SNNSLKGHIFSRIFSL-----RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG 662
            +N L       +          ++ L L+     G     LS            +    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL--- 119

Query: 663 KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIK 722
                      L    +                 S    +   + +          +S  
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 179

Query: 723 QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 782
            ++ +   +  Q  + +     +L          N      I             +N  G
Sbjct: 180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239

Query: 783 EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQG 842
           +V +       L                                  K    + +  G +G
Sbjct: 240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299

Query: 843 SVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH 902
           +       +         +       +       S          +     +I    L  
Sbjct: 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV-----LAQNRFLLELQISNNRLED 354

Query: 903 NNLTGTIPLTFSNLRHIESLDLSYNKLSGK----IPRQLVDLNTLAIFIVAYNNLSGKIP 958
             +             +  L L+   +S      +   L+  ++L    ++ N L     
Sbjct: 355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 414

Query: 959 EWTAQFATFNKSS 971
               +        
Sbjct: 415 LQLVESVRQPGCL 427

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 5e-04
 Identities = 15/110 (13%), Positives = 27/110 (24%), Gaps = 4/110 (3%)

Query: 719 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG----SIPDWIDGLSQLSHLN 774
           L I+ + +    L                 + L    L       I   +     L+ LN
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 775 LAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNN 824
           L  N L       + +  Q     +   +L     +      L  +    
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL 111

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 7e-04
 Identities = 13/90 (14%), Positives = 26/90 (28%)

Query: 70  LKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLR 129
           ++SL +                    +V+ +    +           L     L +L+LR
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 130 GNLCNNSILSSVARLSSLTSLHLSHNILQG 159
            N   +  +  V +     S  +    LQ 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 9e-04
 Identities = 12/91 (13%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 146 SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNV---EVSRGYRGLRKLKSLDL 202
            + SL +    L  +  A+    L   + + ++D  +      ++S   R    L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 203 SGVGIRDGNKLLQSMGSFPSLNTLHLESNNF 233
               +  G+  +  +       +  ++  + 
Sbjct: 63  RSNEL--GDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 2  LDLSGNAFNNNVLSSLA-RLSSLRSLYLSDNRLEGSIDVKE----LDSLRDLEELDIGGN 56
          LD+     ++   + L   L   + + L D  L      K+    L     L EL++  N
Sbjct: 7  LDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELNLRSN 65

Query: 57 KIDKFMVSKGLSKLKSLGLS 76
          ++    V   L  L++    
Sbjct: 66 ELGDVGVHCVLQGLQTPSCK 85

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.004
 Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 20/115 (17%)

Query: 22  SLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFK 81
            ++SL +    L  +   + L  L+  + + +    +           + S         
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT----EARCKDISSA-------- 50

Query: 82  GTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLS-KLKKLDLRGNLCNN 135
                        L  L++  NE+ ++ V   L+ L   S K++KL L+      
Sbjct: 51  -------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 3e-11
 Identities = 37/208 (17%), Positives = 63/208 (30%), Gaps = 7/208 (3%)

Query: 598 CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN 657
              +   ++    +L   +   +   ++   L L  N        +L   + L  L L+ 
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 658 NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY 717
             L+         L  L  + +  N L+    +         + D+S N ++        
Sbjct: 65  AELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVL-DVSFNRLTSLPLGALR 121

Query: 718 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH 777
            L   Q    K      L  G       L  L L+ N L       ++GL  L  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 778 NNLEGEVPIQLCRLNQLQLLDLSDNNLH 805
           N+L   +P      + L    L  N   
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 3e-09
 Identities = 32/213 (15%), Positives = 70/213 (32%), Gaps = 14/213 (6%)

Query: 742 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 801
             +S + ++     L  ++P  +      + L+L+ N L       L    +L  L+L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 802 NNLHGLIP-SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 860
             L  L            +  +N          +            ++  +     + + 
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 861 YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 920
              +  +           N+L    P  +    +++ L+L++NNLT       + L +++
Sbjct: 125 ELQELYL---------KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 921 SLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL 953
           +L L  N L   IP+     + L    +  N  
Sbjct: 176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 6e-09
 Identities = 32/205 (15%), Positives = 64/205 (31%), Gaps = 8/205 (3%)

Query: 528 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 587
              ++    N    +P ++          ++S N L     ++      L  L+L     
Sbjct: 12  HLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-- 65

Query: 588 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 647
             E+        + +      +++    +     +L  L  L +  N        +L   
Sbjct: 66  --ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 648 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN 707
             L+ LYL  N L    P  L     L+ + +  N+L          L++L  L + +N+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 708 ISGSLPSCFYPLSIKQVHLSKNMLH 732
           +       F    +    L  N   
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 43/179 (24%), Positives = 64/179 (35%), Gaps = 5/179 (2%)

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 698
            +P  L K      L+L+ N L       L     L  + +  +  E         L  L
Sbjct: 24  ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQVDGTLPVL 79

Query: 699 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 758
             LD+S N +           ++  + +S N L   L  G       L  L L  N L  
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKT 138

Query: 759 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 817
             P  +    +L  L+LA+NNL       L  L  L  L L +N+L+ +    F +  L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 29/188 (15%), Positives = 50/188 (26%), Gaps = 8/188 (4%)

Query: 520 LPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQF 579
           LP    K    L +S N         +      L   N     LD +  +       L  
Sbjct: 25  LPPDLPKDTTILHLSENLLYTFSLATLMP-YTRLTQLN-----LDRAELTKLQVDGTLPV 78

Query: 580 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 639
           L   +          L    +    +   + +    +             L    + +  
Sbjct: 79  LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 640 IPQSLSKCSSLKGLYLNN-NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 698
           +P  L   +          NNL+      L  L+ L  +++ +N L   IP  F     L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

Query: 699 QILDISDN 706
               +  N
Sbjct: 198 PFAFLHGN 205

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.9 bits (125), Expect = 1e-07
 Identities = 51/323 (15%), Positives = 99/323 (30%), Gaps = 21/323 (6%)

Query: 519 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 578
           RL     ++   L+++N          + ++ P L     S N+L   +P    ++  L 
Sbjct: 31  RLRDCLDRQAHELELNNLGLS-----SLPELPPHLESLVASCNSLT-ELPELPQSLKSLL 84

Query: 579 FLDLSNNKLTGEIP----------DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 628
             + +   L+   P              +  +         +     +        +L +
Sbjct: 85  VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 629 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI 688
           +    N              +      N+      +P  L ++    +I+     L+   
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 689 PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT 748
            +     D+  +  + D   S    +           L +++    + E  F   S L  
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 749 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 808
                N  +  I    D    L  LN+++N L  E+P    RL   + L  S N+L  + 
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLAEVP 320

Query: 809 PSCFDNTTLHESYNNNSS-PDKP 830
               +   LH  YN     PD P
Sbjct: 321 ELPQNLKQLHVEYNPLREFPDIP 343

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 6e-07
 Identities = 52/308 (16%), Positives = 85/308 (27%), Gaps = 45/308 (14%)

Query: 351 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 410
             HL+ L    N L   LP       SL+ L V  N L       PL+    +   +L  
Sbjct: 57  PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK 112

Query: 411 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 470
                  S   + +     +    +   + E   + +   +   +  +L           
Sbjct: 113 LPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 172

Query: 471 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLY---------------------- 508
                       E              L+N   L  +Y                      
Sbjct: 173 SLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVR 232

Query: 509 ---------LVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNIS 559
                    L            I S       ++   N   +    + D+ PSL   N+S
Sbjct: 233 DNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVS 292

Query: 560 MNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSR 619
            N L   +P+       L+ L  S N L  E+P+       NL+ L +  N L+      
Sbjct: 293 NNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQ----NLKQLHVEYNPLRE-FPDI 342

Query: 620 IFSLRNLR 627
             S+ +LR
Sbjct: 343 PESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 7e-07
 Identities = 56/337 (16%), Positives = 102/337 (30%), Gaps = 32/337 (9%)

Query: 624 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 683
           R    L L        +P+       L+ L  + N+L+ ++P    +LK    +++  N+
Sbjct: 38  RQAHELELNNLGL-SSLPELPP---HLESLVASCNSLT-ELPELPQSLK---SLLVDNNN 89

Query: 684 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC 743
           L+         L  L       NN    LP       +K + +  N L            
Sbjct: 90  LKA-----LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 744 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 803
                          +  + +  L  L  L   + +      +    L+   ++  ++  
Sbjct: 145 ----------IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL 194

Query: 804 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 863
                       T   + NN          S      + +    + E+ +  T       
Sbjct: 195 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 254

Query: 864 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 923
               LS L       N     I         ++ LN+S+N L   +P     L     L 
Sbjct: 255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LI 310

Query: 924 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 960
            S+N L+ ++P    +L  L    V YN L  + P+ 
Sbjct: 311 ASFNHLA-EVPELPQNLKQL---HVEYNPLR-EFPDI 342

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 7e-07
 Identities = 50/330 (15%), Positives = 94/330 (28%), Gaps = 17/330 (5%)

Query: 349 CPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRL 408
           C      EL ++N  L  SLP    +   L  L  S N LT        +    ++   L
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLTELPELPQSLKSLLVDNNNL 90

Query: 409 SNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVT 468
                  P+      ++++L+      N    +I +  + + K                 
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 469 FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP---IHSH 525
             + L     L      +           L  + +               +        +
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 526 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 585
                L    +       + + D   + +              + F  +  L       N
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 586 KLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 645
             + EI         +LE L++SNN L             L  L+   NH   E+P+   
Sbjct: 271 ASSNEIRSLC-DLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHL-AEVPELP- 323

Query: 646 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQ 675
              +LK L++  N L  + P    +++ L+
Sbjct: 324 --QNLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 3e-06
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 14/164 (8%)

Query: 446 HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLE 505
             LT  +   +L  +            +   +     EL       +    +    ++L 
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263

Query: 506 FLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG 565
                 ++ +   R        L  L+VSNN        E+  + P L     S N L  
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHL-A 317

Query: 566 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 609
            +P    N   L+ L +  N L  E PD       ++E L +++
Sbjct: 318 EVPELPQN---LKQLHVEYNPLR-EFPDIPE----SVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 1e-04
 Identities = 47/334 (14%), Positives = 85/334 (25%), Gaps = 26/334 (7%)

Query: 93  NNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHL 152
                L+++   + +L  P+    L  L              NS+        SL SL +
Sbjct: 38  RQAHELELNNLGLSSL--PELPPHLESL----------VASCNSLTELPELPQSLKSLLV 85

Query: 153 SHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNK 212
            +N L+   D         +    +                +       L  +       
Sbjct: 86  DNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 145

Query: 213 LLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFP 272
              +          +L                       L    +  +I          P
Sbjct: 146 AAGNNQLEELPELQNLPFLTAIYA-DNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 273 SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLS 332
            L  +      +  +          ++    +        +     + E++ S       
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 333 GSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSI 392
                  SS  +         L+EL + NN L   LP        L  L  SFN L   +
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA-EV 319

Query: 393 SSSPLVHLTSIEELRLSNNHFR----IPVSLEPL 422
              P     ++++L +  N  R    IP S+E L
Sbjct: 320 PELP----QNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.002
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 16/103 (15%)

Query: 128 LRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEV 187
              N  +N I S      SL  L++S+N L   + A        LE L  + N +  V  
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLAEVP- 320

Query: 188 SRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLES 230
                  + LK L +        N L +      S+  L + S
Sbjct: 321 ----ELPQNLKQLHVE------YNPLREFPDIPESVEDLRMNS 353

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 2e-07
 Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 8/138 (5%)

Query: 569 SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 628
           + + N +  + LDL   K+   I  +L       + +  S+N +          LR L+ 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 629 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG----KIPRWLGNLKGLQHIVMPKNHL 684
           LL+  N               L  L L NN+L           L +L  L  +  P  + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 685 EGPIPVEFCRLDSLQILD 702
           +        ++  +++LD
Sbjct: 128 KHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 20/127 (15%), Positives = 37/127 (29%), Gaps = 3/127 (2%)

Query: 887  PQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIF 946
             Q  N  R + L+L    +   I    + L   +++D S N++          L  L   
Sbjct: 12   AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 947  IVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLI 1006
            +V  N +               +     N  +    L    SL +++          N  
Sbjct: 69   LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 1007 DMDSFFI 1013
                + I
Sbjct: 129  HYRLYVI 135

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 27/194 (13%), Positives = 62/194 (31%), Gaps = 17/194 (8%)

Query: 742 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 801
             +  +  +L    +  ++    + L+ +  +   +++++    IQ   L  +  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 77

Query: 802 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTT----- 856
           N L  + P            + N   D                   I +I          
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 857 -----KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL 911
                 N                    +  +  I P +  LT++Q L LS N+++  +  
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS-DLR- 194

Query: 912 TFSNLRHIESLDLS 925
             + L++++ L+L 
Sbjct: 195 ALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 33/201 (16%), Positives = 68/201 (33%), Gaps = 14/201 (6%)

Query: 12  NVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLK 71
             + S    +      L    +  ++   EL+S+    ++    + I      + L  + 
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSID---QIIANNSDIKSVQGIQYLPNVT 71

Query: 72  SLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSK--------L 123
            L L+G        +    +   L + +    ++ +L   + L+ LS            +
Sbjct: 72  KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131

Query: 124 KKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 183
               L      N+ ++ +  LS LT L           D      L+ L+ L ++ N I 
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS 191

Query: 184 NVEVSRGYRGLRKLKSLDLSG 204
           ++       GL+ L  L+L  
Sbjct: 192 DLR---ALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 34/187 (18%), Positives = 73/187 (39%), Gaps = 19/187 (10%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
            +L   +  + V  +   L+S+  +  +++ ++    V+ +  L ++ +L + GNK+   
Sbjct: 29  DNLKKKSVTDAV--TQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNGNKLTDI 83

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVP---------- 111
                L  L  L L     K    +++     +L +     ++I+ LV            
Sbjct: 84  KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGN 143

Query: 112 -QGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLS 170
            +  +        K   L       S +  +A L+ L +L+LS N +    D +    L 
Sbjct: 144 NKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS---DLRALAGLK 200

Query: 171 NLEELDI 177
           NL+ L++
Sbjct: 201 NLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 34/209 (16%), Positives = 64/209 (30%), Gaps = 33/209 (15%)

Query: 542 IPVEIGDILP-----SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLA 596
           +P  I  I         +  N+   ++  ++  +   +  +  +  +N+ +         
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ-- 65

Query: 597 MCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL------------------LLEGNHFVG 638
               N+  L L+ N L               +L                   L   H   
Sbjct: 66  -YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 698
                L     L+ LYL NN ++         L  L  + +  N +   +P     L  L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKL 180

Query: 699 QILDISDNNISGSLPSCFYPLSIKQVHLS 727
           Q L +S N+IS  L +     ++  + L 
Sbjct: 181 QNLYLSKNHIS-DLRALAGLKNLDVLELF 208

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.0 bits (115), Expect = 5e-07
 Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 3/163 (1%)

Query: 566 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRN 625
            IP           L L++N+L     D L     +L  L L  N L G   +      +
Sbjct: 22  EIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 626 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 685
           ++ L L  N       +       LK L L +N +S  +P    +L  L  + +  N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 686 GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 728
               + +   + L+   ++        PS    + IK +  S+
Sbjct: 140 CNCHLAWF-AEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 37/167 (22%), Positives = 62/167 (37%), Gaps = 7/167 (4%)

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWL-GNLKGLQHIVMPKNHLEGPIPVEFCRLDS 697
           EIP+ +        L LN+N L       L G L  L  + + +N L G  P  F     
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 698 LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 757
           +Q L + +N I       F  L   +     +     +  G+F + +SL +L+L+ N  N
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 758 GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 804
            +          L   +L         P    ++  +Q+ DL  +  
Sbjct: 140 CNCHLAW-FAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 32/182 (17%), Positives = 61/182 (33%), Gaps = 6/182 (3%)

Query: 645 SKCS-SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS-LQILD 702
           + C      +      L  +IPR +        +++  N L              L  L+
Sbjct: 4   AMCHCEGTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLE 60

Query: 703 ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD 762
           +  N ++G  P+ F   S  Q          ++    F     L TL+L  N ++  +P 
Sbjct: 61  LKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120

Query: 763 WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN 822
             + L+ L+ LNLA N       +        +   L+        PS   +  + +  +
Sbjct: 121 SFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRK-KSLNGGAARCGAPSKVRDVQIKDLPH 179

Query: 823 NN 824
           + 
Sbjct: 180 SE 181

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 6/165 (3%)

Query: 479 LKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNF 538
             E  L+  ++     + L      L  L L  + L G           ++ L +  N  
Sbjct: 31  TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 539 QGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC 598
           +          L  L   N+  N +   +P SF ++  L  L+L++N             
Sbjct: 91  KEISNKMFLG-LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA--WF 147

Query: 599 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 643
              L   SL+  + +    S    +R+++   L  + F      S
Sbjct: 148 AEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEFKCSSENS 189

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 9e-07
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 11/130 (8%)

Query: 24  RSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGT 83
           R L+L+   L     +  L+ L  +  LD+  N++        L+ L+ L +        
Sbjct: 1   RVLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRALP--PALAALRCLEVLQASDNAL 55

Query: 84  FDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLC---NNSILSS 140
            +V    +   L+ L +  N +        ++ L    +L  L+L+GN            
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQS---AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

Query: 141 VARLSSLTSL 150
              L S++S+
Sbjct: 113 AEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 5e-06
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 653 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL 712
           L+L + +L+  +   L  L  + H+ +  N L    P     L  L++L  SDN +  ++
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE-NV 58

Query: 713 PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL---NGSIPDWIDGLSQ 769
                   ++++ L  N L          +C  LV L+L  N L    G      + L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 770 LSHL 773
           +S +
Sbjct: 119 VSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 7e-06
 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 1   MLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDK 60
           +L L+        L  L +L  +  L LS NRL        L +LR LE L    N ++ 
Sbjct: 2   VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP--ALAALRCLEVLQASDNALEN 57

Query: 61  FMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNL--VVPQGLERLS 118
                 L +L+ L L     + +  ++   S   L +L++ GN +     +  +  E L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 119 RLSKL 123
            +S +
Sbjct: 118 SVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 23/131 (17%), Positives = 52/131 (39%), Gaps = 11/131 (8%)

Query: 97  VLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNI 156
           VL ++  ++        L  L +L  +  LDL     +N + +    L++L  L +    
Sbjct: 2   VLHLAHKDL------TVLCHLEQLLLVTHLDLS----HNRLRALPPALAALRCLEVLQAS 51

Query: 157 LQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQS 216
                +     +L  L+EL + +N +      +      +L  L+L G  +     + + 
Sbjct: 52  DNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 111

Query: 217 MGS-FPSLNTL 226
           +    PS++++
Sbjct: 112 LAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 6/110 (5%)

Query: 699 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 758
           ++L ++  +++  L      L +  + LS N L              L  L  S N L  
Sbjct: 1   RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALEN 57

Query: 759 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGL 807
                     Q   L L +N L+    IQ L    +L LL+L  N+L   
Sbjct: 58  VDGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 10/126 (7%)

Query: 557 NISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI 616
           +++   L  ++      ++ +  LDLS+N+L    P   A+ C+ +       +      
Sbjct: 4   HLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL----QASDNALEN 57

Query: 617 FSRIFSLRNLRWLLLEGNHFVG-EIPQSLSKCSSLKGLYLNNNNLSGK---IPRWLGNLK 672
              + +L  L+ LLL  N        Q L  C  L  L L  N+L  +     R    L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 673 GLQHIV 678
            +  I+
Sbjct: 118 SVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 31/154 (20%), Positives = 50/154 (32%), Gaps = 38/154 (24%)

Query: 773 LNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFK 832
           L+LAH +L   V   L +L  +  LDLS N L  L P+      L     ++++ +    
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 833 TSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ-IGN 891
            +      +                                L L  N+L      Q + +
Sbjct: 61  VANLPRLQE--------------------------------LLLCNNRLQQSAAIQPLVS 88

Query: 892 LTRIQTLNLSHNNLT---GTIPLTFSNLRHIESL 922
             R+  LNL  N+L    G        L  + S+
Sbjct: 89  CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 24/105 (22%)

Query: 874 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP---------------------LT 912
           L L+   L   +   +  L  +  L+LSHN L    P                       
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 913 FSNLRHIESLDLSYNKL-SGKIPRQLVDLNTLAIFIVAYNNLSGK 956
            +NL  ++ L L  N+L      + LV    L +  +  N+L  +
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 3/114 (2%)

Query: 871 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP-LTFSNLRHIESLDLSYNKL 929
            +GL  + +  +      +     +  L + +      +       L  + +L +  + L
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 930 SGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 983
               P        L+   +++N L   +   T Q  +  +    GNP  C   L
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 27/175 (15%), Positives = 48/175 (27%), Gaps = 26/175 (14%)

Query: 598 CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN 657
           C      L  + +                            +    L    +L  LY+ N
Sbjct: 6   CPHGSSGLRCTRDGAL-------------------------DSLHHLPGAENLTELYIEN 40

Query: 658 NNLSGKIPR-WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF 716
                 +    L  L  L+++ + K+ L    P  F     L  L++S N +        
Sbjct: 41  QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100

Query: 717 YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS 771
             LS++++ LS N LH                  +    L       +  +   S
Sbjct: 101 QGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 8e-04
 Identities = 21/148 (14%), Positives = 41/148 (27%), Gaps = 3/148 (2%)

Query: 577 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 636
              L  + +    +   HL       E    +   L+      +  L  LR L +  +  
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 637 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRL 695
               P +      L  L L+ N L   +         LQ +V+  N L     +    R 
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRW 127

Query: 696 DSLQILDISDNNISGSLPSCFYPLSIKQ 723
           +   +  + +  +          +    
Sbjct: 128 EEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 17/130 (13%), Positives = 34/130 (26%)

Query: 566 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRN 625
                      L  L + N +    +          L  L++  + L+            
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 626 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 685
           L  L L  N       +++   S  + +   N        RWL   +      +P+  L+
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141

Query: 686 GPIPVEFCRL 695
                    +
Sbjct: 142 CHGQGPLAHM 151

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 26/237 (10%)

Query: 373 ANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFD 432
               +   +    + +T +++ +    L  I  L           ++E +   + L   +
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 433 AKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGE 492
            K+N+I       +          L+  +    S    K +     L+  +   +     
Sbjct: 70  LKDNQITDLAPLKN----------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI 119

Query: 493 FPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPS 552
                L   + L+ LYL  + +     L   ++ +   +  +  +    +          
Sbjct: 120 TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL-----SK 174

Query: 553 LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 609
           L       N +    P    ++  L  + L NN+++   P        NL  ++L+N
Sbjct: 175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 35/244 (14%), Positives = 79/244 (32%), Gaps = 33/244 (13%)

Query: 167 DSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTL 226
            +L+N  ++    + + +         L  + +L   G G+      ++ +    +L  L
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQAD---LDGITTLSAFGTGVTT----IEGVQYLNNLIGL 68

Query: 227 HLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNG 286
            L+ N             +   L+ LT               S    L+++         
Sbjct: 69  ELKDNQI----------TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 287 VLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQ 346
           +          +L+ L +   +I   +    +      S+             +      
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGN-----------AQVSDLT 167

Query: 347 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 406
            L  L+ L  L  D+N +    P  LA+  +L  + +  NQ++      PL + +++  +
Sbjct: 168 PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS---PLANTSNLFIV 222

Query: 407 RLSN 410
            L+N
Sbjct: 223 TLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 2e-05
 Identities = 27/212 (12%), Positives = 69/212 (32%), Gaps = 16/212 (7%)

Query: 742 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 801
             ++ + +    + +  ++      L  ++ L+     +     +Q   LN L  L+L D
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKD 72

Query: 802 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 861
           N +  L P            + N   +                  +I ++      +   
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 862 AYQGRVLSLLAGLDLSCNKLVGHI---------PPQIGNLTRIQTLNLSHNNLTGTIPLT 912
                +  +     L+    + ++            + NL+++ TL    N ++   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 913 FSNLRHIESLDLSYNKLSGKIP-RQLVDLNTL 943
            ++L ++  + L  N++S   P     +L  +
Sbjct: 191 LASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 42/213 (19%), Positives = 75/213 (35%), Gaps = 22/213 (10%)

Query: 2   LDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKF 61
           +    +   + V  + A L  + +L      +     ++ +  L +L  L++  N+I   
Sbjct: 24  IAAGKSNVTDTV--TQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKDNQITDL 78

Query: 62  MVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSR-- 119
              K L+K+  L LSG   K    +    S   L++      ++  L     L+ L    
Sbjct: 79  APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138

Query: 120 ---------LSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLS 170
                            L       S L+ +A LS LT+L    N +          SL 
Sbjct: 139 NQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS---PLASLP 195

Query: 171 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLS 203
           NL E+ + +N+I +V           L  + L+
Sbjct: 196 NLIEVHLKNNQISDVS---PLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 29/210 (13%), Positives = 62/210 (29%), Gaps = 18/210 (8%)

Query: 725 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 784
              K+ +   +   T  +   + TL      +     + +  L+ L  L L  N +    
Sbjct: 25  AAGKSNVTDTV---TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA 79

Query: 785 PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSV 844
           P++         L  +       I       TL  +    +        S          
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 845 EKKILEIFEFTTKNIAYAYQGRVLSL---------LAGLDLSCNKLVGHIPPQIGNLTRI 895
           +   +      T     +     +S          L  L    NK+    P  + +L  +
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNL 197

Query: 896 QTLNLSHNNLTGTIPLTFSNLRHIESLDLS 925
             ++L +N ++   PL  +N  ++  + L+
Sbjct: 198 IEVHLKNNQISDVSPL--ANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 41/218 (18%), Positives = 83/218 (38%), Gaps = 11/218 (5%)

Query: 43  DSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSG 102
            +L +  ++  G + +   +    L  + +L   GTG      +      NNL  L++  
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 103 NEIDNLVVPQGL--ERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGS 160
           N+I +L   + L       LS     ++       SI +     + +T +     +    
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 161 IDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL--LQSMG 218
           +   + + ++N+  L    N       +     L  L +L        D NK+  +  + 
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192

Query: 219 SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD 256
           S P+L  +HL++N     ++    L N +NL  +TL +
Sbjct: 193 SLPNLIEVHLKNNQ----ISDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 8e-04
 Identities = 29/218 (13%), Positives = 73/218 (33%), Gaps = 15/218 (6%)

Query: 120 LSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND 179
           L+   K+    +  N +   + A L  +T+L      +      +    L+NL  L++ D
Sbjct: 18  LANAIKIAAGKS--NVTDTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 180 NEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLH-----LESNNFT 234
           N+I ++   +    + +L+        +     L        +   +         +N  
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 235 ATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFP 294
                  ++ N + L  LT        +   S  +   +L  L+    + N +       
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192

Query: 295 HFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLS 332
              +L  + ++  +I+  +        +  +L  ++L+
Sbjct: 193 SLPNLIEVHLKNNQISDVSPL-----ANTSNLFIVTLT 225

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 2e-06
 Identities = 33/219 (15%), Positives = 68/219 (31%), Gaps = 7/219 (3%)

Query: 566 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRN 625
            IPS          L     KL        +      +     N+ L+        +L  
Sbjct: 22  EIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 626 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 685
           L  + +E  + +  I     +        L +N     +P         + ++  ++++ 
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 686 GPIPVEFCRLDSLQI---LDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN 742
                    +        L ++ N I       F    + +++LS N    +L    F  
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 743 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE 781
            S  V LD+S   ++      ++ L +L   +    NL+
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 3e-06
 Identities = 35/235 (14%), Positives = 75/235 (31%), Gaps = 10/235 (4%)

Query: 697 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 756
           S ++    ++ ++  +PS   P +  ++      L   +++G F     L  +++S N +
Sbjct: 9   SNRVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDV 65

Query: 757 NGSIPDWIDGLSQLSHLNLAH--NNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 814
              I   +       H       NNL    P     L  LQ L +S+  +  L      +
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 815 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 874
           +      +   + +       S  G         L        +       ++  L    
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDEL---- 181

Query: 875 DLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK 928
           +LS N  +  +P  +    +    L++S   +         NL+ + +      K
Sbjct: 182 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 6e-06
 Identities = 29/234 (12%), Positives = 70/234 (29%), Gaps = 6/234 (2%)

Query: 353 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 412
             +      + +   +P  L    +   L     +L   I          +E++ +S N 
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQND 64

Query: 413 FRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKF 472
               +  +   N  K           N       +      L+ L +S+     +     
Sbjct: 65  VLEVIEADVFSNLPK-LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 473 LYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLD 532
           ++   ++      +I +     N  +  + +   L+L  + +        +  +     +
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDEL-N 182

Query: 533 VSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 586
           +S+NN    +P ++       V  +IS   +         N+  L+     N K
Sbjct: 183 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 2e-04
 Identities = 23/200 (11%), Positives = 47/200 (23%), Gaps = 1/200 (0%)

Query: 744 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 803
            + + L      L         G   L  + ++ N++   +   +            +  
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 804 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 863
            + L  +      L        S     K    +       +  +          I    
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147

Query: 864 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 923
              +      L L+ N +              +     +NNL       F        LD
Sbjct: 148 FVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 207

Query: 924 LSYNKLSGKIPRQLVDLNTL 943
           +S  ++       L +L  L
Sbjct: 208 ISRTRIHSLPSYGLENLKKL 227

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 27/235 (11%), Positives = 56/235 (23%), Gaps = 7/235 (2%)

Query: 377 SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 436
           S R+     +++T      P     +  ELR      R+ +          L+  +   N
Sbjct: 9   SNRVFLCQESKVT----EIPSDLPRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQN 63

Query: 437 EINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNW 496
           ++   I            +     +N    +    F    +       +         + 
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 497 LLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 556
           +      L  +    +         +        L ++ N  Q                 
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGT-QLDELN 182

Query: 557 NISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNS 611
               N L+      F        LD+S  ++   +P +       L   S  N  
Sbjct: 183 LSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK 236

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 48/346 (13%), Positives = 97/346 (28%), Gaps = 47/346 (13%)

Query: 621 FSL--RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 678
           FS+  ++L+   +        +   L +  S+K + L+ N +  +  RWL          
Sbjct: 3   FSIEGKSLKLDAITTED-EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN------- 54

Query: 679 MPKNHLEGPIPVEFCRLDSLQILDISDN---NISGSLPSCFYPLSIKQVHLSKNMLHGQL 735
                              L+I + SD     +   +P     L    +   K       
Sbjct: 55  -------------IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 101

Query: 736 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQ 795
                      +   LS +     +    +GL   +   +A    E  V  +      L+
Sbjct: 102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 161

Query: 796 LLDLSDNNL--------HGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKK 847
            +    N L             S     T+    N              ++  Q      
Sbjct: 162 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD 221

Query: 848 ILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGN------LTRIQTLNLS 901
           + +       + A A   +    L  L L+   L       + +         +QTL L 
Sbjct: 222 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ 281

Query: 902 HNNLTGTIPLT-----FSNLRHIESLDLSYNKLS--GKIPRQLVDL 940
           +N +      T        +  +  L+L+ N+ S    +  ++ ++
Sbjct: 282 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.4 bits (108), Expect = 1e-05
 Identities = 52/339 (15%), Positives = 106/339 (31%), Gaps = 20/339 (5%)

Query: 298 SLEHLDMRFARIALN--TSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQ 355
           S+E   ++   I      S   ++     S+K + LSG+T+GT ++R L + +     L+
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 356 ELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRI 415
                +                L    +   +L  ++  S      + +E  +       
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH-TVRLSDNAFGPTAQEPLIDFLSKHT 121

Query: 416 PVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYH 475
           P+    L N+       AK      E+  +        L+S+    N  ++ +  ++   
Sbjct: 122 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 181

Query: 476 QHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSN 535
               +      +   G  P             +L+ + LA    L +   +   F  + +
Sbjct: 182 FQSHRLLHTVKMVQNGIRPEG---------IEHLLLEGLAYCQELKVLDLQDNTFTHLGS 232

Query: 536 NNFQGHIPVEIGDILPSLVYFNISMNALDGSI-PSSFGNVIFLQFLDLSNNKLTGEIPDH 594
           +     +          L    +S       +   S    I LQ L L  N++  +    
Sbjct: 233 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 292

Query: 595 LAMC----CVNLEFLSLSNNSLK--GHIFSRIFSLRNLR 627
           L         +L FL L+ N       +   I  + + R
Sbjct: 293 LKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 331

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 5e-04
 Identities = 45/313 (14%), Positives = 90/313 (28%), Gaps = 15/313 (4%)

Query: 116 RLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQG---SIDAKEFDSLSNL 172
           R S   K  KLD        S+ + +    S+  + LS N +        ++   S  +L
Sbjct: 2   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61

Query: 173 EELDINDNEIDNV--EVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLES 230
           E  + +D     V  E+    R L +          +R  +         P ++ L   +
Sbjct: 62  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 121

Query: 231 NNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSG 290
                 L                L + +++     +            +    +      
Sbjct: 122 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 181

Query: 291 QGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCP 350
                      +     R       L         LK L L  +T     S  L   L  
Sbjct: 182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 241

Query: 351 LAHLQELYIDNNDLRGSLPWCLANT------TSLRILDVSFNQLTG----SISSSPLVHL 400
             +L+EL +++  L       + +         L+ L + +N++      ++ +     +
Sbjct: 242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 301

Query: 401 TSIEELRLSNNHF 413
             +  L L+ N F
Sbjct: 302 PDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 6e-04
 Identities = 38/331 (11%), Positives = 92/331 (27%), Gaps = 34/331 (10%)

Query: 526 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG----SIPSSFGNVIFLQFLD 581
           K L+   ++  + +    V +     S+    +S N +       +  +  +   L+  +
Sbjct: 8   KSLKLDAITTEDEKSVFAVLLE--DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 582 LSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK---GHIFSRIFSLRNLRWLLLEGNHFVG 638
            S+      + D +      L    L    L        +   + +      L  +  + 
Sbjct: 66  FSDIFTG-RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 639 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFC----- 693
            +    +      G  +        + +   N   L+ I+  +N LE     E+      
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 694 --------RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSS 745
                    + +    +  ++ +   L  C     +     +   L          +  +
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 746 LVTLDLSYNYLNGSIPDWI------DGLSQLSHLNLAHNNLEGEVPIQLC-----RLNQL 794
           L  L L+   L+      +           L  L L +N +E +    L      ++  L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 795 QLLDLSDNNLHGLIPSCFDNTTLHESYNNNS 825
             L+L+ N          +   +  +     
Sbjct: 305 LFLELNGNRFSEEDDVVDEIREVFSTRGRGE 335

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 8e-05
 Identities = 33/192 (17%), Positives = 70/192 (36%), Gaps = 19/192 (9%)

Query: 742 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 801
             +  +   L    +  ++      L Q++ L      ++    ++   LN L  ++ S+
Sbjct: 16  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSN 71

Query: 802 NNLHGLIP-----------SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILE 850
           N L  + P              +         N ++       +  I+          L 
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 851 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP 910
             E ++  I+       L+ L  L+ S N++    P  + NLT ++ L++S N ++    
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISV 189

Query: 911 LTFSNLRHIESL 922
           L  + L ++ESL
Sbjct: 190 L--AKLTNLESL 199

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.003
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 7/119 (5%)

Query: 697 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 756
           S Q LD+        L +         ++   +M           N   L++L+LS N L
Sbjct: 23  SQQALDLKGLRSDPDLVAQNI---DVVLNRRSSMAA--TLRIIEENIPELLSLNLSNNRL 77

Query: 757 NG--SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 813
                +   +     L  LNL+ N L+ E  +   +  +L+ L L  N+L         
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1066
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	100.0
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.97
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.97
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.97
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.95
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.94
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.93
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.93
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.93
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.92
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.91
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.9
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.9
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.9
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.89
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.89
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.83
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.8
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.77
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.73
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.72
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.71
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.69
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	99.0
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.74
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.47

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=0  Score=243.53  Aligned_cols=260  Identities=35%  Similarity=0.577  Sum_probs=222.4

Q ss_pred             CCCCEEECCCCCCCC--CCCCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             999589855685888--8893345999986898349-9334899811149999979975377153238988778742589
Q 001497          648 SSLKGLYLNNNNLSG--KIPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQV  724 (1066)
Q Consensus       648 ~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l  724 (1066)
                      ..++.|+++++.+.+  .+|..++++++|++|++++ |.+.+.+|..+.++++|+.|++++|.+.+..+           
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~-----------  118 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-----------  118 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-----------
T ss_pred             EEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC-----------
T ss_conf             798899898998888887984784675335202026543330024311454200110203564344332-----------


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC-CEEECCCCC
Q ss_conf             8489705111586633699996299920821665553321079998989676782654577212168999-899875884
Q 001497          725 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQL-QLLDLSDNN  803 (1066)
Q Consensus       725 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~  803 (1066)
                                  . .+..+..|+.++++.|.+...+|..+..+++++.+++++|.+.+.+|..+..+..+ +.+++++|+
T Consensus       119 ------------~-~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         119 ------------D-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             ------------G-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             ------------C-CCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             ------------2-222011100111122455556851220674000000235533562031214431123231022464


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             86558854347764333579999999985433458999842354654211102331001121102566569855881267
Q 001497          804 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG  883 (1066)
Q Consensus       804 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  883 (1066)
                      +++..|..+..+.                                                      ...++++.+...+
T Consensus       186 l~~~~~~~~~~l~------------------------------------------------------~~~l~l~~~~~~~  211 (313)
T d1ogqa_         186 LTGKIPPTFANLN------------------------------------------------------LAFVDLSRNMLEG  211 (313)
T ss_dssp             EEEECCGGGGGCC------------------------------------------------------CSEEECCSSEEEE
T ss_pred             CCCCCCCCCCCCC------------------------------------------------------CCCCCCCCCCCCC
T ss_conf             3533243322222------------------------------------------------------2233333343322


Q ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             69847779898888978576375454211019999997859787385336801008977877875667363369987524
Q 001497          884 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ  963 (1066)
Q Consensus       884 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~~~~  963 (1066)
                      .+|..+..+++++.+++++|.+++.+| .++.+++|+.|+|++|+++|.+|..+..+++|++|++++|+++|.+|. ...
T Consensus       212 ~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~  289 (313)
T d1ogqa_         212 DASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGN  289 (313)
T ss_dssp             CCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCC-CCC
T ss_conf             222222222221112222222222222-222455444444765706660876884799999897958835166898-666


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             576685445788789889998998
Q 001497          964 FATFNKSSYDGNPFLCGLPLPICR  987 (1066)
Q Consensus       964 ~~~~~~~~~~~N~~~c~~~l~~c~  987 (1066)
                      +..++..++.||+.+||.|+..|.
T Consensus       290 L~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         290 LQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             GGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             CCCCCHHHHCCCCCCCCCCCCCCC
T ss_conf             799897886889500198988989

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=9.8e-45  Score=228.24  Aligned_cols=255  Identities=30%  Similarity=0.494  Sum_probs=178.0

Q ss_pred             CCCEEECCCCCCCC--CCCCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             77747645850444--4797778999995898556-85888889334599998689834993348998111499999799
Q 001497          625 NLRWLLLEGNHFVG--EIPQSLSKCSSLKGLYLNN-NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL  701 (1066)
Q Consensus       625 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  701 (1066)
                      +++.|+++++.+.+  .+|..+..+++|++|++++ |.+.+.+|..++++++|++|++++|++.+..+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCC
T ss_conf             98899898998888887984784675335202026543330024311454200110203564344332222201110011


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCC-CEEECCCCCC
Q ss_conf             753771532389887787425898489705111586633699996299920821665553321079998-9896767826
Q 001497          702 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQL-SHLNLAHNNL  780 (1066)
Q Consensus       702 ~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l  780 (1066)
                      ++++|.+.+.                       +|. .+..++.++.+++++|.+.+.+|..+..+.++ +.+++++|++
T Consensus       131 ~l~~N~~~~~-----------------------~p~-~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         131 DFSYNALSGT-----------------------LPP-SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ECCSSEEESC-----------------------CCG-GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             CCCCCCCCCC-----------------------CCH-HHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             1122455556-----------------------851-2206740000002355335620312144311232310224643


Q ss_pred             CCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             54577212168999899875884865588543477643335799999999854334589998423546542111023310
Q 001497          781 EGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA  860 (1066)
Q Consensus       781 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  860 (1066)
                      ++..+..+..+..+ .++++++...+.+|..+...                                             
T Consensus       187 ~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~---------------------------------------------  220 (313)
T d1ogqa_         187 TGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSD---------------------------------------------  220 (313)
T ss_dssp             EEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTT---------------------------------------------
T ss_pred             CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCC---------------------------------------------
T ss_conf             53324332222222-33333343322222222222---------------------------------------------


Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             01121102566569855881267698477798988889785763754542110199999978597873853368010089
Q 001497          861 YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL  940 (1066)
Q Consensus       861 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  940 (1066)
                              +.++.+++++|.+.+.+| .+..+++|+.|+|++|+++|.+|..|+.+++|+.|+|++|+|+|.+|. +..+
T Consensus       221 --------~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L  290 (313)
T d1ogqa_         221 --------KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL  290 (313)
T ss_dssp             --------SCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTG
T ss_pred             --------CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCC-CCCC
T ss_conf             --------221112222222222222-222455444444765706660876884799999897958835166898-6667


Q ss_pred             CCCCEEECCCCC-CCCC-CCC
Q ss_conf             778778756673-6336-998
Q 001497          941 NTLAIFIVAYNN-LSGK-IPE  959 (1066)
Q Consensus       941 ~~L~~l~ls~N~-l~~~-~p~  959 (1066)
                      ++|+.+++++|+ ++|. +|.
T Consensus       291 ~~L~~l~l~~N~~l~g~plp~  311 (313)
T d1ogqa_         291 QRFDVSAYANNKCLCGSPLPA  311 (313)
T ss_dssp             GGSCGGGTCSSSEEESTTSSC
T ss_pred             CCCCHHHHCCCCCCCCCCCCC
T ss_conf             998978868895001989889

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=5.1e-41  Score=210.27  Aligned_cols=148  Identities=26%  Similarity=0.382  Sum_probs=77.6

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             33699996299920821665553321079998989676782654577212168999899875884865588543477643
Q 001497          739 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH  818 (1066)
Q Consensus       739 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  818 (1066)
                      .+..+++|+.+++++|.+++..  .+..+++|+.|+++++.+.+..  .+..++.++.++++.|.+++..  .+.     
T Consensus       236 ~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~--~~~-----  304 (384)
T d2omza2         236 TLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS--PIS-----  304 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG--GGG-----
T ss_pred             HHHCCCCCCHHCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCC--CCC-----
T ss_conf             3432565341004467447877--5355466877545674457877--3235652222332323333322--100-----


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             33579999999985433458999842354654211102331001121102566569855881267698477798988889
Q 001497          819 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTL  898 (1066)
Q Consensus       819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  898 (1066)
                                                                      .++.++.+++++|++++..  .+..+++|+.|
T Consensus       305 ------------------------------------------------~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L  334 (384)
T d2omza2         305 ------------------------------------------------NLKNLTYLTLYFNNISDIS--PVSSLTKLQRL  334 (384)
T ss_dssp             ------------------------------------------------GCTTCSEEECCSSCCSCCG--GGGGCTTCCEE
T ss_pred             ------------------------------------------------HHCCCCEEECCCCCCCCCC--CCCCCCCCCEE
T ss_conf             ------------------------------------------------0024676777788778984--53668988989


Q ss_pred             ECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             78576375454211019999997859787385336801008977877875667
Q 001497          899 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN  951 (1066)
Q Consensus       899 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ls~N  951 (1066)
                      ++++|++++ ++ .+.++++|+.|++++|++++..|  +.+++.|+.|++++|
T Consensus       335 ~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         335 FFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             ECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             ECCCCCCCC-CH-HHCCCCCCCEEECCCCCCCCCHH--HCCCCCCCEEECCCC
T ss_conf             898998999-74-67089999989897995899800--003999999639789

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=3e-39  Score=201.76  Aligned_cols=54  Identities=31%  Similarity=0.465  Sum_probs=26.8

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCC
Q ss_conf             6656985588126769847779898888978576375454211019999997859787
Q 001497          870 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN  927 (1066)
Q Consensus       870 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  927 (1066)
                      +|++|++++|++++ ++ .+..+++|+.|++++|++++..|  +.++++|+.|+|++|
T Consensus       330 ~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         330 KLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             TCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCEEECCCCCCCC-CH-HHCCCCCCCEEECCCCCCCCCHH--HCCCCCCCEEECCCC
T ss_conf             88989898998999-74-67089999989897995899800--003999999639789

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.9e-38  Score=196.31  Aligned_cols=205  Identities=23%  Similarity=0.316  Sum_probs=88.5

Q ss_pred             CCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             78998337627664585666359999799843763643352001388777747645850444479777899999589855
Q 001497          577 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN  656 (1066)
Q Consensus       577 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  656 (1066)
                      .+.++.++..++ .+|..+.   +++++|++++|.++...+..|.++++|++|++++|.+....+.+|..++.|+.++++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEECCCCCC-CCCCCCC---CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEECCC
T ss_conf             999985599988-5198889---997989784991898696576046565231123443445235665279855783156


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf             68588888933459999868983499334899811149999979975377153238988778742589848970511158
Q 001497          657 NNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLK  736 (1066)
Q Consensus       657 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~  736 (1066)
                      +|++. .+|..  ....+..+.+..|.+....+..+.....+..++...|.....                     ...+
T Consensus        88 ~n~l~-~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~---------------------~~~~  143 (305)
T d1xkua_          88 KNQLK-ELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------GIEN  143 (305)
T ss_dssp             SSCCS-BCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------GBCT
T ss_pred             CCCCC-CCCCC--HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC---------------------CCCC
T ss_conf             87567-67640--011132321024610234444540133110000123333346---------------------7776


Q ss_pred             CCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             66336999962999208216655533210799989896767826545772121689998998758848655885434
Q 001497          737 EGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD  813 (1066)
Q Consensus       737 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  813 (1066)
                       ..|..+++|+.+++++|.+... +..  .+++|+.|++++|......+..|..++.++.|++++|.+++..+..|.
T Consensus       144 -~~~~~l~~L~~l~l~~n~l~~l-~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~  216 (305)
T d1xkua_         144 -GAFQGMKKLSYIRIADTNITTI-PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  216 (305)
T ss_dssp             -TGGGGCTTCCEEECCSSCCCSC-CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             -CCCCCCCCCCCCCCCCCCCCCC-CCC--CCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             -4223456567120346774516-710--177667898978867788826764134133015445533222345433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-36  Score=189.00  Aligned_cols=66  Identities=26%  Similarity=0.367  Sum_probs=26.0

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC
Q ss_conf             3369999629992082166555332107999898967678265457721216899989987588486
Q 001497          739 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH  805 (1066)
Q Consensus       739 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  805 (1066)
                      .|.+++.++.|++++|.+.+..+.++.++++|++|++++|.++ .+|..+..+++|++|++++|+++
T Consensus       190 ~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCC
T ss_conf             7641341330154455332223454334433224302554002-46311033467898989898657

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-37  Score=190.91  Aligned_cols=56  Identities=30%  Similarity=0.336  Sum_probs=17.7

Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCC
Q ss_conf             98558812676984777989888897857637545421101999999785978738
Q 001497          874 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL  929 (1066)
Q Consensus       874 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  929 (1066)
                      +++++|++++..|..|..+++|+.||+++|.+++..|..|..+.+|+.|++++|.+
T Consensus       182 l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             HHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
T ss_conf             14211434662816766532000233333522100000235546568898119988

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-36  Score=185.43  Aligned_cols=86  Identities=23%  Similarity=0.225  Sum_probs=38.4

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             66569855881267698477798988889785763754542110199999978597873853368010089778778756
Q 001497          870 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  949 (1066)
Q Consensus       870 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ls  949 (1066)
                      .++.|++++|.+++..+..|.++++|+.+++++|+++++.|..|..+++|+.||+++|++.+..+..|..+.+|++++++
T Consensus       154 ~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~  233 (284)
T d1ozna_         154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN  233 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred             CHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf             05022314176566256665465634131421143466281676653200023333352210000023554656889811


Q ss_pred             CCCCCC
Q ss_conf             673633
Q 001497          950 YNNLSG  955 (1066)
Q Consensus       950 ~N~l~~  955 (1066)
                      +|.+.+
T Consensus       234 ~N~l~C  239 (284)
T d1ozna_         234 DNPWVC  239 (284)
T ss_dssp             SSCEEC
T ss_pred             CCCCCC
T ss_conf             998878

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=179.41  Aligned_cols=159  Identities=27%  Similarity=0.314  Sum_probs=85.6

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             33699996299920821665553321079998989676782654577212168999899875884865588543477643
Q 001497          739 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH  818 (1066)
Q Consensus       739 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  818 (1066)
                      +|.++++|++|+|++|.++.. + .++.+++|+.|++++|++. ..+..+..+++|++|++++|.+.+..+..+..    
T Consensus        50 ~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----  122 (266)
T d1p9ag_          50 TLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG----  122 (266)
T ss_dssp             GGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT----
T ss_pred             HHHCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC----
T ss_conf             863456552213566544443-1-1111223211111222221-11112122222222222223110110011222----


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             33579999999985433458999842354654211102331001121102566569855881267698477798988889
Q 001497          819 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTL  898 (1066)
Q Consensus       819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  898 (1066)
                                                                       +..++.|++++|.++...+..+..++.++.+
T Consensus       123 -------------------------------------------------l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l  153 (266)
T d1p9ag_         123 -------------------------------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (266)
T ss_dssp             -------------------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             -------------------------------------------------CCCCCCCCCCCCCCCEECCCCCCCCCCCHHC
T ss_conf             -------------------------------------------------2111122124342102212333221110000


Q ss_pred             ECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             78576375454211019999997859787385336801008977877875667363
Q 001497          899 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS  954 (1066)
Q Consensus       899 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~  954 (1066)
                      ++++|++++..+..|..+++|+.|+|++|+|+ .+|.++..++.|+.+++++|.+.
T Consensus       154 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEEECCCCCC
T ss_conf             00015652237200134212423430139785-56866777888999983699987

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-33  Score=173.65  Aligned_cols=184  Identities=28%  Similarity=0.284  Sum_probs=109.1

Q ss_pred             CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99629992082166555332107999898967678265457721216899989987588486558854347764333579
Q 001497          744 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN  823 (1066)
Q Consensus       744 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~  823 (1066)
                      +++++|+|++|.+++..+..|.++++|+.|++++|.++...  .+..+++|++|++++|+++.. +..+..         
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~---------   98 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSL-PLLGQT---------   98 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEECCSSCCSSC-CCCTTT---------
T ss_pred             CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC-CCCCCC---------
T ss_conf             68898988499289859778634565522135665444431--111122321111122222111-112122---------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             99999998543345899984235465421110233100112110256656985588126769847779898888978576
Q 001497          824 NSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN  903 (1066)
Q Consensus       824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  903 (1066)
                                                                  ++.|+.|++++|.+.+..+..+..+.+++.|++++|
T Consensus        99 --------------------------------------------l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n  134 (266)
T d1p9ag_          99 --------------------------------------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN  134 (266)
T ss_dssp             --------------------------------------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred             --------------------------------------------CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
T ss_conf             --------------------------------------------222222222223110110011222211112212434


Q ss_pred             CCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             37545421101999999785978738533680100897787787566736336998752457668544578878988999
Q 001497          904 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL  983 (1066)
Q Consensus       904 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~~N~~~c~~~l  983 (1066)
                      .++...+..+..+++++.+++++|++++..+..|..++.|+.|++++|+++ .+|........++...+.||||.|+|.+
T Consensus       135 ~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             CCCEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEEECCCCCCCCCCH
T ss_conf             210221233322111000000015652237200134212423430139785-5686677788899998369998788643


Q ss_pred             C
Q ss_conf             8
Q 001497          984 P  984 (1066)
Q Consensus       984 ~  984 (1066)
                      .
T Consensus       214 ~  214 (266)
T d1p9ag_         214 L  214 (266)
T ss_dssp             H
T ss_pred             H
T ss_conf             7

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.97  E-value=1.4e-27  Score=145.21  Aligned_cols=58  Identities=31%  Similarity=0.358  Sum_probs=25.0

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC
Q ss_conf             369999629992082166555332107999898967678265457721216899989987588486
Q 001497          740 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH  805 (1066)
Q Consensus       740 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  805 (1066)
                      +..++.++.+++++|.... .+.   ...++..+.+.++.+... +.   ....+...++..+.+.
T Consensus       200 ~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~-~~---~~~~l~~~~~~~~~~~  257 (353)
T d1jl5a_         200 LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFS  257 (353)
T ss_dssp             CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS
T ss_pred             CCCCCCCCCCCCCCCCCCC-CCC---CCCCCCCCCCCCCCCCCC-CC---CCCCCCCCCCCCCCCC
T ss_conf             3455533312225422234-553---233433322233333444-33---3443222222223332

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.97  E-value=2.4e-26  Score=139.31  Aligned_cols=57  Identities=32%  Similarity=0.547  Sum_probs=26.7

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf             665698558812676984777989888897857637545421101999999785978738533680
Q 001497          870 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR  935 (1066)
Q Consensus       870 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  935 (1066)
                      +|++|++++|+++ .+|..   +++|+.|+|++|+|+ .+|..   +.+|+.|++++|+|+ .+|.
T Consensus       285 ~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         285 SLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             TCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             CCCEEECCCCCCC-CCCCC---CCCCCEEECCCCCCC-CCCCC---CCCCCEEECCCCCCC-CCCC
T ss_conf             8898979799168-35665---487998989999687-54532---288898987699189-7776

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.7e-32  Score=167.39  Aligned_cols=96  Identities=19%  Similarity=0.245  Sum_probs=32.3

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCC----C-CCCCCEEECCCCCCCCCCC-
Q ss_conf             368887678986898456524443013210489864996589878963011001----7-9977699858985779778-
Q 001497           89 FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVA----R-LSSLTSLHLSHNILQGSID-  162 (1066)
Q Consensus        89 ~~~l~~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~l~~n~~~~~~~~~l~----~-l~~L~~L~L~~~~l~~~~~-  162 (1066)
                      +..++++++|+|++|+++..........+..+++|++|++++|.+.+.....+.    . .++|++|++++|.++.... 
T Consensus        23 ~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~  102 (460)
T d1z7xw1          23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  102 (460)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             HHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCC
T ss_conf             97677999998289999889999999998539998889795985972899999999843788778877888775432210


Q ss_pred             --HHHHCCCCCCCEEECCCCCCCC
Q ss_conf             --3322389983299768986673
Q 001497          163 --AKEFDSLSNLEELDINDNEIDN  184 (1066)
Q Consensus       163 --~~~l~~l~~L~~L~L~~~~~~~  184 (1066)
                        ...+...++|++|++++|.+.+
T Consensus       103 ~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1         103 VLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCHHHCCCCCCCCCCCCCCCHH
T ss_conf             121100003432002444332023

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.1e-27  Score=143.60  Aligned_cols=200  Identities=17%  Similarity=0.125  Sum_probs=90.8

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             98689834993348998111499999799753771532389887787425898489705111586633699996299920
Q 001497          673 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS  752 (1066)
Q Consensus       673 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~L~~L~L~  752 (1066)
                      ++++|++++|.++...+..|.++++|+.|++++|.+..                       .++..+|.+++.++++.+.
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~-----------------------~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-----------------------VIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCC-----------------------EECSSSEESCTTCCEEEEE
T ss_pred             CCCEEECCCCCCCCCCHHHHHCCCHHHHHHHCCCCCCC-----------------------EEECCCCCCCCCCCCCCCC
T ss_conf             88999876991896496686146432321102211242-----------------------0100112222222221111


Q ss_pred             C-CCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHH-HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8-2166555332107999898967678265457721-2168999899875884865588543477643335799999999
Q 001497          753 Y-NYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKP  830 (1066)
Q Consensus       753 ~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~  830 (1066)
                      . |.+....+.+|.++++|+.+++++|.+....+.. +..+..+..+...++.+....+..|..+.              
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~--------------  152 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--------------  152 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB--------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------------
T ss_conf             123432222221222222222234211112554333222111122222221211122222222223--------------


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE-EECCCCCCCCCC
Q ss_conf             8543345899984235465421110233100112110256656985588126769847779898888-978576375454
Q 001497          831 FKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT-LNLSHNNLTGTI  909 (1066)
Q Consensus       831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~-L~Ls~N~l~~~~  909 (1066)
                                                            ..++.+++++|+++...+..|. ...++. +++++|+++.+.
T Consensus       153 --------------------------------------~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~  193 (242)
T d1xwdc1         153 --------------------------------------FESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELP  193 (242)
T ss_dssp             --------------------------------------SSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCC
T ss_pred             --------------------------------------CCCEEEECCCCCCCCCCCCCCC-CHHHHCCCCCCCCCCCCCC
T ss_conf             --------------------------------------3100122001233332222222-0111012123543246424


Q ss_pred             CHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             211019999997859787385336801008977877875
Q 001497          910 PLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV  948 (1066)
Q Consensus       910 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~l  948 (1066)
                      +..|.++++|+.|++++|+|+...+..|.++..|+.+++
T Consensus       194 ~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         194 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             TTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             HHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf             788668999998989799289459779737713414767

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-26  Score=140.91  Aligned_cols=50  Identities=12%  Similarity=0.076  Sum_probs=23.8

Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEC
Q ss_conf             85588126769847779898888978576375454211019999997859
Q 001497          875 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL  924 (1066)
Q Consensus       875 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  924 (1066)
                      ++++|+++...+..|.++++|+.|++++|+++...+..|.++++|+.+++
T Consensus       183 ~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         183 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             CCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf             23543246424788668999998989799289459779737713414767

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=2.6e-25  Score=134.30  Aligned_cols=57  Identities=23%  Similarity=0.433  Sum_probs=19.7

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             7798988889785763754542110199999978597873853368010089778778756
Q 001497          889 IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  949 (1066)
Q Consensus       889 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ls  949 (1066)
                      +.++++|+.|++++|++++..  .+..+++|+.|++++|+++...|  +..++.|+.++++
T Consensus       169 l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             HCCCCCCEECCCCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEEEE
T ss_conf             056463356445888417785--34479999989795996899802--0369998989712

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.93  E-value=1.3e-25  Score=135.78  Aligned_cols=175  Identities=23%  Similarity=0.265  Sum_probs=91.1

Q ss_pred             EEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC-CCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99920821665553321079998989676782654-57721216899989987588486558854347764333579999
Q 001497          748 TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG-EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS  826 (1066)
Q Consensus       748 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~  826 (1066)
                      .++.+++.++ .+|..+.  +++++|+|++|+++. ..+..|..+++|+.|++++|.+....+..|....          
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~----------   78 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS----------   78 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT----------
T ss_pred             EEEEECCCCC-CCCCCCC--CCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC----------
T ss_conf             9997089967-0298989--78788984898775530200257876272130136322121212221122----------


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             99998543345899984235465421110233100112110256656985588126769847779898888978576375
Q 001497          827 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT  906 (1066)
Q Consensus       827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  906 (1066)
                                                                 .|++|++++|+++...|..|.++++|+.|+|++|+|+
T Consensus        79 -------------------------------------------~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~  115 (192)
T d1w8aa_          79 -------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             -------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred             -------------------------------------------CCCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
T ss_conf             -------------------------------------------2210100355344349799807974655245774535


Q ss_pred             CCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             4542110199999978597873853368010089778778756673633699875245766854457887898899
Q 001497          907 GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP  982 (1066)
Q Consensus       907 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~~N~~~c~~~  982 (1066)
                      ++.|..|..+++|+.|+|++|.+.+..+... -...++...+..|.+.+..|..   +....-.++..|.+.|.++
T Consensus       116 ~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         116 CVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             EECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCCCCC
T ss_pred             CCCHHHHCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCCCCEEECCCHH---HCCCEEEECCHHHCCCCCC
T ss_conf             3597785687533420003644343530277-7642354035689827689843---3698861448755758998

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=5.7e-24  Score=127.77  Aligned_cols=52  Identities=23%  Similarity=0.426  Sum_probs=22.2

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECC
Q ss_conf             66569855881267698477798988889785763754542110199999978597
Q 001497          870 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLS  925 (1066)
Q Consensus       870 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  925 (1066)
                      .|+.|++++|++++ ++. +..+++|+.|++++|+++++.|  ++++++|+.|+++
T Consensus       174 ~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         174 KLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             TCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             CCEECCCCCCCCCC-CHH-HCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEEEE
T ss_conf             33564458884177-853-4479999989795996899802--0369998989712

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=2.2e-25  Score=134.64  Aligned_cols=157  Identities=20%  Similarity=0.235  Sum_probs=77.4

Q ss_pred             CCCCEEECCCCCCCC-CCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             996299920821665-5533210799989896767826545772121689998998758848655885434776433357
Q 001497          744 SSLVTLDLSYNYLNG-SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN  822 (1066)
Q Consensus       744 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~  822 (1066)
                      +++++|+|++|.++. ..+..|.++++|+.|++++|.+....+..|..+++|++|++++|+++...+..|.++.      
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~------  102 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH------  102 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT------
T ss_pred             CCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCC------
T ss_conf             78788984898775530200257876272130136322121212221122221010035534434979980797------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             99999999854334589998423546542111023310011211025665698558812676984777989888897857
Q 001497          823 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH  902 (1066)
Q Consensus       823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  902 (1066)
                                                                     .|+.|+|++|+|++..|..|..+++|++|+|++
T Consensus       103 -----------------------------------------------~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_         103 -----------------------------------------------QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             -----------------------------------------------TCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             -----------------------------------------------CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf             -----------------------------------------------465524577453535977856875334200036


Q ss_pred             CCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf             6375454211019999997859787385336801008977877875667363369
Q 001497          903 NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI  957 (1066)
Q Consensus       903 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~  957 (1066)
                      |.+....+..+ -...++.+.+..|.+++..|..+   ..++.++++.|++.+..
T Consensus       136 N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~C~~  186 (192)
T d1w8aa_         136 NPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             CCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCCCCC
T ss_pred             CCCCCCCCHHH-HHHHHHHHCCCCCCEEECCCHHH---CCCEEEECCHHHCCCCC
T ss_conf             44343530277-76423540356898276898433---69886144875575899

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.6e-24  Score=130.42  Aligned_cols=15  Identities=20%  Similarity=0.370  Sum_probs=5.2

Q ss_pred             CCCCCCCEEECCCCC
Q ss_conf             688876789868984
Q 001497           90 DSFNNLEVLDMSGNE  104 (1066)
Q Consensus        90 ~~l~~L~~L~Ls~~~  104 (1066)
                      .++++|++|++++|.
T Consensus        68 ~~c~~L~~L~L~~~~   82 (284)
T d2astb2          68 SQCSKLQNLSLEGLR   82 (284)
T ss_dssp             TTBCCCSEEECTTCB
T ss_pred             HHCCCCCCCCCCCCC
T ss_conf             748776514523467

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.90  E-value=8.1e-23  Score=122.21  Aligned_cols=74  Identities=28%  Similarity=0.475  Sum_probs=29.8

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             66569855881267698477798988889785763754542110199999978597873853368010089778778756
Q 001497          870 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  949 (1066)
Q Consensus       870 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ls  949 (1066)
                      .++.++++.|.+++  +..+..+++|+.+++++|++++..+  +.++++|+.|++++|+++ .+| .+..+++|++|+++
T Consensus       135 ~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         135 QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             TCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEE
T ss_pred             CCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCC-CCH-HHCCCCCCCEEECC
T ss_conf             12221122233345--4310001332100134643025645--367898999989799899-872-11699998999711

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.90  E-value=1.6e-22  Score=120.82  Aligned_cols=52  Identities=31%  Similarity=0.558  Sum_probs=26.6

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECC
Q ss_conf             66569855881267698477798988889785763754542110199999978597
Q 001497          870 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLS  925 (1066)
Q Consensus       870 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  925 (1066)
                      .|+.+++++|++++ ++. +.++++|+.|++++|+++. +| .+.++++|+.|+|+
T Consensus       157 ~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         157 KLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             TCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             CCCCCCCCCCCCCC-CCC-CCCCCCCCEEECCCCCCCC-CH-HHCCCCCCCEEECC
T ss_conf             32100134643025-645-3678989999897998998-72-11699998999711

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.90  E-value=2.9e-22  Score=119.53  Aligned_cols=40  Identities=43%  Similarity=0.602  Sum_probs=14.6

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCC
Q ss_conf             779898888978576375454211019999997859787385
Q 001497          889 IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS  930 (1066)
Q Consensus       889 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  930 (1066)
                      +..+++|+.|++++|++++..  .++++++|+.|++++|+++
T Consensus       146 l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         146 LSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             GTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCC
T ss_conf             332111111223455556770--1167998999978799799

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=2.7e-22  Score=119.71  Aligned_cols=18  Identities=33%  Similarity=0.678  Sum_probs=6.7

Q ss_pred             CCCCCCCCEEECCCCCCC
Q ss_conf             779898888978576375
Q 001497          889 IGNLTRIQTLNLSHNNLT  906 (1066)
Q Consensus       889 ~~~l~~L~~L~Ls~N~l~  906 (1066)
                      +.++++|+.|++++|+++
T Consensus       168 l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         168 LANLTTLERLDISSNKVS  185 (199)
T ss_dssp             GTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCEEECCCCCCC
T ss_conf             167998999978799799

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1e-23  Score=126.55  Aligned_cols=38  Identities=37%  Similarity=0.469  Sum_probs=15.3

Q ss_pred             CCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCC
Q ss_conf             04898649965898789630110017997769985898
Q 001497          118 SRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHN  155 (1066)
Q Consensus       118 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~  155 (1066)
                      .++++|++|+++++.+.+..+..++++++|++|++++|
T Consensus        68 ~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c  105 (284)
T d2astb2          68 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  105 (284)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             HHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
T ss_conf             74877651452346798678999851899757151001

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.83  E-value=1.8e-20  Score=110.84  Aligned_cols=251  Identities=16%  Similarity=0.189  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC----------CHHHCCCCCCCCEEECCCC
Q ss_conf             112368887678986898456524443013210489864996589878963----------0110017997769985898
Q 001497           86 VREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNS----------ILSSVARLSSLTSLHLSHN  155 (1066)
Q Consensus        86 ~~~~~~l~~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~l~~n~~~~~----------~~~~l~~l~~L~~L~L~~~  155 (1066)
                      ...+.....++.|+|++|.+...........+...++|+.++++++.....          +...+..+++|+.|++++|
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             99996389978897849837789999999999858998888887775433454210678799988754777563300001


Q ss_pred             CCCCCCC---HHHHCCCCCCCEEECCCCCCCCHHHCCC------------CCCCCEEEEEECCCCCCCCCCCHHH--HCC
Q ss_conf             5779778---3322389983299768986673000023------------3464224584127975445530222--116
Q 001497          156 ILQGSID---AKEFDSLSNLEELDINDNEIDNVEVSRG------------YRGLRKLKSLDLSGVGIRDGNKLLQ--SMG  218 (1066)
Q Consensus       156 ~l~~~~~---~~~l~~l~~L~~L~L~~~~~~~~~~~~~------------~~~~~~L~~L~L~~~~~~~~~~~~~--~l~  218 (1066)
                      .+.....   ...+...+.|++|++++|.+.......+            ......++.+.++++.+.......-  .+.
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~  183 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  183 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHH
T ss_conf             34554333101110023432100000246666543111121222211000146764211101365013554332211112


Q ss_pred             CCCCCCEEECCCCCCCC---CCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             89997487336886434---322000014778873773378866220577785318998689356870235456999866
Q 001497          219 SFPSLNTLHLESNNFTA---TLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPH  295 (1066)
Q Consensus       219 ~l~~L~~L~L~~~~~~~---~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~  295 (1066)
                      ..+.+++|++++|.+..   .......+..+++|+.|++++|.+.......+..                          
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~--------------------------  237 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI--------------------------  237 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH--------------------------
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCC--------------------------
T ss_conf             333213354333222222232002433211012112223333222222223444--------------------------


Q ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHC---
Q ss_conf             66431010202376403210233037778620221038767998886567777789987499877996410145000---
Q 001497          296 FKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCL---  372 (1066)
Q Consensus       296 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---  372 (1066)
                                                                         .+..+++|++|++++|.+.+.....+   
T Consensus       238 ---------------------------------------------------~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~  266 (344)
T d2ca6a1         238 ---------------------------------------------------ALKSWPNLRELGLNDCLLSARGAAAVVDA  266 (344)
T ss_dssp             ---------------------------------------------------HGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred             ---------------------------------------------------CCCCCCCCHHHHHHCCCCCCHHHHHHHHH
T ss_conf             ---------------------------------------------------33232211110300475671566788877


Q ss_pred             ---CCCCCCCEEECCCCCCCCCCCCCCCC-----CCCCCCEEECCCCCCC
Q ss_conf             ---18998848962347375778973345-----8999979984268544
Q 001497          373 ---ANTTSLRILDVSFNQLTGSISSSPLV-----HLTSIEELRLSNNHFR  414 (1066)
Q Consensus       373 ---~~l~~L~~L~l~~n~l~~~l~~~~l~-----~l~~L~~L~l~~n~l~  414 (1066)
                         ...+.|++|++++|.+...- ...+.     .+++|++|++++|.+.
T Consensus       267 l~~~~~~~L~~L~ls~N~i~~~~-~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         267 FSKLENIGLQTLRLQYNEIELDA-VRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHTCSSCCCCEEECCSSCCBHHH-HHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHCCCCCCCEEECCCCCCCHHH-HHHHHHHHHCCCCCCCEEECCCCCCC
T ss_conf             63156888898989898698089-99999999703899998978798089

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.3e-20  Score=107.92  Aligned_cols=14  Identities=21%  Similarity=-0.007  Sum_probs=4.6

Q ss_pred             CCCCEEECCCCCCC
Q ss_conf             99629992082166
Q 001497          744 SSLVTLDLSYNYLN  757 (1066)
Q Consensus       744 ~~L~~L~L~~n~l~  757 (1066)
                      ..+++|+|++|+++
T Consensus        18 ~~lr~L~L~~n~I~   31 (162)
T d1a9na_          18 VRDRELDLRGYKIP   31 (162)
T ss_dssp             TSCEEEECTTSCCC
T ss_pred             CCCCEEECCCCCCC
T ss_conf             74848978899788

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-18  Score=102.14  Aligned_cols=114  Identities=15%  Similarity=0.164  Sum_probs=76.3

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             656985588126769847779898888978576-3754542110199999978597873853368010089778778756
Q 001497          871 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN-NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  949 (1066)
Q Consensus       871 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ls  949 (1066)
                      ...++.+++.+. ..|..+..+++|+.|++++| .++.+.+..|.++++|+.|++++|+|+...|.+|..++.|+.++++
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCEEEECCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECC
T ss_conf             996985289976-5860025765657431689866443692122566666721620212477420111245543333226


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6736336998752457668544578878988999899
Q 001497          950 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPIC  986 (1066)
Q Consensus       950 ~N~l~~~~p~~~~~~~~~~~~~~~~N~~~c~~~l~~c  986 (1066)
                      +|+++...+.. -+...+....+.+||+.|+|.+.|.
T Consensus        89 ~N~l~~l~~~~-~~~~~l~~L~L~~Np~~C~C~~~~l  124 (156)
T d2ifga3          89 FNALESLSWKT-VQGLSLQELVLSGNPLHCSCALRWL  124 (156)
T ss_dssp             SSCCSCCCSTT-TCSCCCCEEECCSSCCCCCGGGHHH
T ss_pred             CCCCCCCCHHH-HCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             78785157456-3353212433579863388117999

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=2e-17  Score=96.10  Aligned_cols=82  Identities=30%  Similarity=0.447  Sum_probs=31.1

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEEC
Q ss_conf             66569855881267698477798988889785763754542110199999978597873853368-01008977877875
Q 001497          870 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP-RQLVDLNTLAIFIV  948 (1066)
Q Consensus       870 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~l  948 (1066)
                      .|++|++++|.++ .+|..|..+++|+.|++++|.+++. | .+..+++|+.|++++|+++...+ ..+..++.|+.+++
T Consensus        21 ~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l   97 (124)
T d1dcea3          21 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL   97 (124)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCCCC-CCHHHHHHHHCCCCCCCCCCCCCCC-C-CCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCEEEC
T ss_conf             8898979787168-6521565543135453243211235-7-41233555768888986588888256537999999989


Q ss_pred             CCCCCC
Q ss_conf             667363
Q 001497          949 AYNNLS  954 (1066)
Q Consensus       949 s~N~l~  954 (1066)
                      ++|+++
T Consensus        98 ~~N~i~  103 (124)
T d1dcea3          98 QGNSLC  103 (124)
T ss_dssp             TTSGGG
T ss_pred             CCCCCC
T ss_conf             799688

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.72  E-value=1.3e-19  Score=106.75  Aligned_cols=130  Identities=24%  Similarity=0.295  Sum_probs=70.7

Q ss_pred             CCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             53321079998989676782654577212168999899875884865588543477643335799999999854334589
Q 001497          760 IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISG  839 (1066)
Q Consensus       760 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (1066)
                      .+..+..+++|+.|++++|.++.. + .+..+++|+.|++++|.++.. |..+.                          
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~i-~~~~~--------------------------   90 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKI-ENLDA--------------------------   90 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECSC-SSHHH--------------------------
T ss_pred             HHHHHHCCCCCCEEECCCCCCCCC-C-CCCCCCCCCCHHHCCCCCCCC-CCCCC--------------------------
T ss_conf             246776260461519944689986-4-424782535734135343210-00033--------------------------


Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-HHCCCCCC
Q ss_conf             99842354654211102331001121102566569855881267698477798988889785763754542-11019999
Q 001497          840 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP-LTFSNLRH  918 (1066)
Q Consensus       840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~  918 (1066)
                                                 .++.|+.|++++|.++. ++ .+..+++|+.|++++|+++.... ..+..+++
T Consensus        91 ---------------------------~~~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~  141 (198)
T d1m9la_          91 ---------------------------VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDK  141 (198)
T ss_dssp             ---------------------------HHHHCCEEECSEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTT
T ss_pred             ---------------------------CCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCC
T ss_conf             ---------------------------22123333333322222-22-22222234111234102125542212367776


Q ss_pred             CCEEECCCCCCCCCCCCC----------CCCCCCCCEEE
Q ss_conf             997859787385336801----------00897787787
Q 001497          919 IESLDLSYNKLSGKIPRQ----------LVDLNTLAIFI  947 (1066)
Q Consensus       919 L~~L~Ls~N~l~~~~p~~----------~~~l~~L~~l~  947 (1066)
                      |+.|++++|++....+..          +..++.|+.||
T Consensus       142 L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             CSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             CCEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEC
T ss_conf             302342798434676322220558999998788958769

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=2.9e-17  Score=95.34  Aligned_cols=42  Identities=29%  Similarity=0.381  Sum_probs=15.1

Q ss_pred             CCCCCCCCEEECCCCCCCCCCC-HHCCCCCCCCEEECCCCCCC
Q ss_conf             7798988889785763754542-11019999997859787385
Q 001497          889 IGNLTRIQTLNLSHNNLTGTIP-LTFSNLRHIESLDLSYNKLS  930 (1066)
Q Consensus       889 ~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~  930 (1066)
                      +..+++|+.|++++|+++.... ..+..+++|+.|++++|+++
T Consensus        61 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCC
T ss_conf             1233555768888986588888256537999999989799688

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=9.2e-17  Score=92.90  Aligned_cols=86  Identities=20%  Similarity=0.232  Sum_probs=56.7

Q ss_pred             CCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             56656985588-12676984777989888897857637545421101999999785978738533680100897787787
Q 001497          869 SLLAGLDLSCN-KLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI  947 (1066)
Q Consensus       869 ~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~  947 (1066)
                      +++++|++++| .++...+..|.++++|+.|+|++|+|+.+.|..|..+++|+.|+|++|+|+ .+|........++.++
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~  109 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELV  109 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEE
T ss_pred             CCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCC-CCCHHHHCCCCCCCCC
T ss_conf             565743168986644369212256666672162021247742011124554333322678785-1574563353212433


Q ss_pred             CCCCCCCC
Q ss_conf             56673633
Q 001497          948 VAYNNLSG  955 (1066)
Q Consensus       948 ls~N~l~~  955 (1066)
                      +++|.+.+
T Consensus       110 L~~Np~~C  117 (156)
T d2ifga3         110 LSGNPLHC  117 (156)
T ss_dssp             CCSSCCCC
T ss_pred             CCCCCCCC
T ss_conf             57986338

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=6.9e-12  Score=69.31  Aligned_cols=64  Identities=30%  Similarity=0.249  Sum_probs=29.1

Q ss_pred             CCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCC
Q ss_conf             56656985588126769--84777989888897857637545421101999999785978738533
Q 001497          869 SLLAGLDLSCNKLVGHI--PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK  932 (1066)
Q Consensus       869 ~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  932 (1066)
                      +.|++|++++|+++..-  +..+..+++|+.|+|++|.++...+-.+.....|+.|++++|.+...
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             CCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCC
T ss_conf             787886377766667731588986588561000435721342344222033104266489976767

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.74  E-value=4.5e-09  Score=55.68  Aligned_cols=130  Identities=8%  Similarity=0.081  Sum_probs=0.0

Q ss_pred             CCCCCHHHHHCCCCCCCEEECCCCCCCCCC----CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf             767002764207997768978998144787----8212678999874658788586532225898985897799856676
Q 001497            8 AFNNNVLSSLARLSSLRSLYLSDNRLEGSI----DVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGT   83 (1066)
Q Consensus         8 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~   83 (1066)
                      ++...+-......++|++|+++++...+..    ...++...++|++|++++|.+.+..                   ..
T Consensus         2 dv~~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~-------------------~~   62 (167)
T d1pgva_           2 DVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSE-------------------AR   62 (167)
T ss_dssp             CHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHH-------------------HT
T ss_pred             CHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHH-------------------HH
T ss_conf             88999999982899981978279999898999999999763776454012015621567-------------------98


Q ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-------CHHHCCCCCCCCEEECCCCC
Q ss_conf             56112368887678986898456524443013210489864996589878963-------01100179977699858985
Q 001497           84 FDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNS-------ILSSVARLSSLTSLHLSHNI  156 (1066)
Q Consensus        84 ~~~~~~~~l~~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~l~~n~~~~~-------~~~~l~~l~~L~~L~L~~~~  156 (1066)
                      .....+...+.|++|++++|.+.........+.+...+.|++|+++++.+...       +...+...+.|+.|+++.+.
T Consensus        63 ~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          63 GLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             THHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHCCCCCCEEEEHHHCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf             87531000234330033010214599999999998489389877887768886579999999999729985386486888

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.47  E-value=1.5e-07  Score=48.35  Aligned_cols=117  Identities=14%  Similarity=0.165  Sum_probs=0.0

Q ss_pred             CCCCCCCEEECCC-CCCCCCC---CCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC----
Q ss_conf             5898985897799-8566765---6112368887678986898456524443013210489864996589878963----
Q 001497           65 KGLSKLKSLGLSG-TGFKGTF---DVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNS----  136 (1066)
Q Consensus        65 ~~l~~L~~L~l~~-~~~~~~~---~~~~~~~l~~L~~L~Ls~~~i~~~~~~~~l~~l~~l~~L~~L~l~~n~~~~~----  136 (1066)
                      .+.+.|++|++.+ +.+....   ....+...++|++|++++|.+.........+.+...+.++.++++++.+...    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             HCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHH
T ss_conf             55999868876899998989999999888419825743015896117789999987752122101210254322014788


Q ss_pred             CHHHCCCCCCCCEEECCCCCCCCCCC-----HHHHCCCCCCCEEECCCCC
Q ss_conf             01100179977699858985779778-----3322389983299768986
Q 001497          137 ILSSVARLSSLTSLHLSHNILQGSID-----AKEFDSLSNLEELDINDNE  181 (1066)
Q Consensus       137 ~~~~l~~l~~L~~L~L~~~~l~~~~~-----~~~l~~l~~L~~L~L~~~~  181 (1066)
                      +...+...++|+.+++..+...-.-.     ...+...+.|++|++..+.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf             99999848652477321677867679999999999849984788581898