Citrus Sinensis ID: 001506

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060-----

MPRRRDDDDDEMDAEEDEYDEQVMDDEIDEEEEEEDDRSSRKRRRSQFIDDVAEEDDEEEEEDYDDDEDYGGGGGAARKPKAKRRSGSEFFDLEAQVDSDEEEDEEEGEDDFIVDGGAELPDEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSPGRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPYRYIELFFILFYHFLMLKLTVHVIMFCSDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP

cccccccccccccccccccccccccccccccHHcccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHccccccccccccEEEEEccccHHHHHHHHHHHHHHHHccccccEEEEEEcccccEEEEEEccHHHHHHHHHHcccEEEEEEEEEcHHHHHHcccccccccccccccEEEEEccccccccEEEEEEEccccEEEEEEEEccccHHHHHHccccccccccccccccccccHHHHHHccccEEEccccccccEEEEEccEEEEccEEEEEEEcccEEEccccccHHHHHHcccccccccccHHHHHHHHHcccccccccccEEEEEcccccccEEEEEEEEccEEEEEccccccccEEEEcccccccccccccEEEEEEcEEcccEEEEEEEEccEEEEEEcccccEEEEEcccccccccccccccccccEEEEEEEEEccccEEEEEEEccccEEEEccccccccEEEEEHHHHHHcccccccEEcccccEEEcccEEEEEcccccccEEEEEEEEEcEEEEEEccEEcccEEEEEEcccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccEEEEEccccEEEEEEccccEEEEEEccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccEEEEEEEccccEEEEEEccccccccEEcccccEEEccccccccEEEEcccccccEEEEEEEEcccEEEEEcccccEEEEEHHHHHHcccc

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccHHHHcccccccEEEEEcccccHHHHHcccHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccHHHccccHHHcccccccccEEEEEEcccHHHHHHHHHHHHHHHcccccEEEEEEEcccccEEEEEEcccHHHHHHHHHcccHHHcccEEEEEHHHcHHHEEEEccccccccccEEEEEccccccccEEEEEEcccccEEEEEEEEEcccccccccccccccccccccccccccccHHHHHHHcccEEEccccccccEEEEEcccEEEccEEEEEEEEEEEEEccccccHHHHHHHccccccccccHHHHHHHHHcccccccccccEEEEEEccEccEEEEEEEEcccEEEEEccccccccccEccHHHHHHHcccccEEEEEEcEcccccEEEEEEcccEEEEEEcccccEEEEcHHHHHHHHHHcccccccccEEEccEEEEccccEEEEEEEccccEEEEEEccccccEEEEEHHHHHccccccEEEEcccccEEEEccEEEEEccccccccEEEEEEEEEEEEEEEccEEccccEEEEEccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEccccEEEEEEEEccEEEEEEHHHEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEcccccccEEEEEEccccccEEEEEEEccccEEEEEcccccEEEEEHHHHHHHccc

mprrrdddddemdaeedeydeqvmddeideeeeeeddrssRKRRRSQFiddvaeeddeeeeedydddedygggggaarkpkakrrsgseffdleaqvdsdeeedeeegeddfivdggaelpdedggrgihrrpllpredeqEDVEALERRIQARYARsshteydeettDVEQqallpsvrdpklwMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIgnykgdlakvvdvdnvrqrvtvkliprIDLQALANKLegrevakkkpfvppprfmnvdEARELHIRVerrrdpmtgdyfeniggmlfkdgfLYKTVSMKSisaqniqptFDELekfrtpgengesdIASLSTLFANrkkghfmkgDAVIVIKGDLKNLKGWVEKVdeenvhirpemkglpkTLAVNSKElckyfepgnhvkvvsgtqagaTGMVLKVEQHVLIILSDTTKEDIRVFADdvvessevttgitkigdyelrdlvlldnnsfGVIIRVESEAFQvlkgvpdrpeVALVKLREIKCKLekksnvqdrnkntvaVKDVVRIvegpckgkqgpvehiYRGILFihdrhhlehagficakssscvvvggsrangdrngdaysrfnslrtppripqspgrysrggppaggrnrggrgghdalvgTTVKvrlgpykgyrgrvvdvkgQSVRVELESQMKVVTVDrsmisdnvvvstpYRYIELFFILFYHFLMLKLTVHVIMfcsdtprygmgsetpmhpsrtplhpymtpmrdagatpihdgmrtpmrdrawnpytpmspprdnwedgnpgswgtspqyqpgsppsrayeaptpgsgwastpggnysdagtprdssstyvnapspylpstpggqpmtpnsasylpgtpggqpmtpgtggldamspvigadnegpwfmpdilvrrsgeeSVVGVIREvlpdgscrvvlgssgngdtitalpneieivpprktdkikimggphrgatgkligvdgtdgivKVDVSLDVKILDMAILAKLAQP

mprrrdddddemdaeedeydeqvmddeideeeeeeddrssrkrrrsqfiddvaeeddeeeeedydddedygggggaarkpkakrrsgseffdleaqvdsdeeedeeegeddfivdggaelpdedggrgihrrpllpredeqedVEALERRIQARyarsshteydeettdveqqallpsvrdpklWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVEskaidlsrdtwVRMKIGnykgdlakvvdvdnvrqrvtvklipridlqalanklegrevakkkpfvppprfmnvdearelhirverrrdpmtgdYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVdeenvhirpemkglpkTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIIlsdttkedIRVFAddvvessevttgitkigdyelrdLVLLDNNSFGVIIRVESeafqvlkgvpdrpevALVKLREikcklekksnvqdrnkntvavkdvvrivegpckgkqgpvEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSrangdrngdaysrfnslrtppripqspgrysrggppaggrnrggrgghdalvgttvkvrlgpykgyrgrvvdvkgqsvrvelesqmkvvtvdrsmisdnvvVSTPYRYIELFFILFYHFLMLKLTVHVIMFCSDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIRevlpdgscrvvlgssgngdtitalpneieivpprktdkikimggphrgatgkligvdgtdGIVKVDVSLDVKILDMAILAKLAQP

MPRRRdddddemdaeedeydeQVMddeideeeeeeddrssrkrrrsQFIDDVAeeddeeeeedydddedygggggAARKPKAKRRSGSEFFDLEAQVdsdeeedeeegeddFIVDGGAELPDEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSPGRYSrggppaggrnrggrggHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPYRYIELFFILFYHFLMLKLTVHVIMFCSDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLpgtpggqpmtpgtggLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP

*******************************************************************************************************************************************************************************LPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEG*****************V**ARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISA**************************LSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEK*******NKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGG*************************************************DALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPYRYIELFFILFYHFLMLKLTVHVIMFCSDTP**************************************************************************************************************************************************************VIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAK****

******************************************************************************************FDLEAQVDSDEEEDEEEGEDDFIV**************************************************************PSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESK**DLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDL***********************FMNVDEARELH*RV***RDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGEN***********************DAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADD****************YELRDLVLLDNNSFGVIIRVESEAFQVL****************************DRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCV*********************************************************GTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTP****************************************************************************************************************************************************************************************************************************VLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLA**

**********************VMDD********************QFIDD************************************SEFFDLE****************DFIVDGGAELPDEDGGRGIHRRPLLPREDEQEDVEALERRIQARYA**************EQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIP*********************GGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPYRYIELFFILFYHFLMLKLTVHVIMFCSDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWG***********************WASTPGGNYS************VNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP

****************************************************************************************EFFDLEAQVDSD*************VD********D*GRGIHRRPLLPREDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALA************PFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGS************************************************DALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVV********L***********K*TVHVIMFCSDTP***M**E****PSRTPLHPYMTPMRDAG*T****GMRTPMRDRAWNPYTPMSP*****EDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MPRRRDDDDDEMDAEEDEYDEQVMDDEIDEEEEEEDDRSSRKRRRSQFIDDVAEEDDEEEEEDYDDDEDYGGGGGAARKPKAKRRSGSEFFDLEAQVDSDEEEDEEEGEDDFIVDGGAELPDEDGGRGIHRRPLLPxxxxxxxxxxxxxxxxxxxxxSSHTEYDEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSPGRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPYRYIELFFILFYHFLMLKLTVHVIMFCSDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1065	2.2.26 [Sep-21-2011]
Q9STN3		1041	Putative transcription el	yes	no	0.965	0.987	0.738	0.0
O80770		989	Putative transcription el	no	no	0.820	0.883	0.638	0.0
O55201		1082	Transcription elongation	yes	no	0.863	0.850	0.331	1e-131
Q5ZI08		1079	Transcription elongation	yes	no	0.861	0.850	0.344	1e-131
O00267		1087	Transcription elongation	yes	no	0.856	0.839	0.330	1e-130
Q5R405		1083	Transcription elongation	yes	no	0.824	0.810	0.335	1e-129
Q9DDT5		1084	Transcription elongation	yes	no	0.823	0.809	0.337	1e-127
Q9V460		1078	Transcription elongation	yes	no	0.825	0.815	0.310	1e-104
Q21338		1208	Transcription elongation	yes	no	0.689	0.607	0.314	7e-84
Q4PIC4		1057	Transcription elongation	N/A	no	0.556	0.561	0.315	2e-80

>sp\|Q9STN3\|SPT51_ARATH Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2	Back alignment and function desciption

 Score = 1486 bits (3846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 796/1078 (73%), Positives = 895/1078 (83%), Gaps = 50/1078 (4%)

Query: 1    MPRRRDDDDDEMDAEEDEYD---EQVMDDEIDEEEEEEDDRSSRKRRRSQFIDDVAEEDD 57
            MPR RD+DD E+D + +  D   E+  D+E +EE       S RKR RS FIDD AEED 
Sbjct: 1    MPRSRDEDD-ELDGDYEALDLEEEEEEDEEEEEERGRGGGGSRRKRGRSNFIDDYAEEDS 59

Query: 58   EEEEEDYDDDEDYGGGGGAARKPKAKRRSGSEFFDLEA-QVDSDEEEDEEEGEDDFIVDG 116
            +EE++D +D     GG GAA K   K+ S S F D EA QVD ++EE+E+E EDDFIVD 
Sbjct: 60   QEEDDDDEDYGSSRGGKGAASK--RKKPSASIFLDREAHQVDDEDEEEEDEAEDDFIVDN 117

Query: 117  GAELPDEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQALL 176
            G +LPDE G R   RR  LPR++  EDVE LERRIQ R++   H EYDEE T+VEQQALL
Sbjct: 118  GTDLPDERGDRRYERR-FLPRDENDEDVEDLERRIQERFSSRHHEEYDEEATEVEQQALL 176

Query: 177  PSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAH 236
            PSVRDPKLWMVKCAIGRERE AVCLMQK ID+G++LQIRSV+ALDHLKN+IY+EADKEAH
Sbjct: 177  PSVRDPKLWMVKCAIGREREVAVCLMQKFIDRGADLQIRSVVALDHLKNFIYVEADKEAH 236

Query: 237  VKEACKGLRNIYS-QKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVD 295
            VKEA KG+RNIY+ QK++LVPIREMTDVL+VESKAIDLSRDTWVRMKIG YKGDLAKVVD
Sbjct: 237  VKEAIKGMRNIYANQKILLVPIREMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVD 296

Query: 296  VDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRD 355
            VDNVRQRVTVKLIPRIDLQALA+KL+GREV+KKK FVPPPRFMN+DEARELHIRVERRRD
Sbjct: 297  VDNVRQRVTVKLIPRIDLQALASKLDGREVSKKKAFVPPPRFMNIDEARELHIRVERRRD 356

Query: 356  PMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLST 415
             MTGDYFENIGGMLFKDGF YK VS+KSI+ QN+ PTFDELEKF  P ENGE D   LST
Sbjct: 357  HMTGDYFENIGGMLFKDGFHYKQVSLKSITVQNVTPTFDELEKFNKPSENGEGDFGGLST 416

Query: 416  LFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCK 475
            LFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENV IR E+KGLP  LAVN +ELCK
Sbjct: 417  LFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVLIRSEVKGLPDPLAVNERELCK 476

Query: 476  YFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITK 535
            YFEPGNHVKVVSGT  GATGMV+KV+QHVLIILSDTTKE +RVFAD VVESSEVTTG+TK
Sbjct: 477  YFEPGNHVKVVSGTHEGATGMVVKVDQHVLIILSDTTKEHVRVFADHVVESSEVTTGVTK 536

Query: 536  IGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQD 595
            IGDYEL DLVLLDN SFGVIIR+E+EAFQVLKGVPDRPEVALVKLREIKCKLEKK NVQD
Sbjct: 537  IGDYELHDLVLLDNLSFGVIIRLENEAFQVLKGVPDRPEVALVKLREIKCKLEKKINVQD 596

Query: 596  RNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGG 655
            R KN +AVKD VR++EGP KGKQGPV+HIY+G+LFI+DRHHLEHAGFICAK +SC+VVGG
Sbjct: 597  RYKNVIAVKDDVRVIEGPSKGKQGPVKHIYKGVLFIYDRHHLEHAGFICAKCTSCIVVGG 656

Query: 656  SRANGDRN-GDAYSRFNSLRTPPRIPQSPGRYSRGGPPAGGRNRGGRGGH-----DALVG 709
            SR+  +RN GD+ SR+ + + P  +P SPGR+ RG       + G  GG      D+L+G
Sbjct: 657  SRSGANRNGGDSLSRYGNFKAPAPVPSSPGRFQRGRGGGYNNSGGRHGGGRGRGDDSLLG 716

Query: 710  TTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPYRYIELFF 769
            TTVK+RLGP+KGYRG VV+VKG SVRVELE  MK+VTVDR  ISDN V +TP+R      
Sbjct: 717  TTVKIRLGPFKGYRGPVVEVKGNSVRVELE--MKIVTVDRGAISDN-VATTPFR------ 767

Query: 770  ILFYHFLMLKLTVHVIMFCSDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMR 829
                                DT RY MGSETPMHPSRTPLHPYMTPMRD+GATPIHDGMR
Sbjct: 768  --------------------DTSRYSMGSETPMHPSRTPLHPYMTPMRDSGATPIHDGMR 807

Query: 830  TPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGG 889
            TPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGG
Sbjct: 808  TPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGG 867

Query: 890  NYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMS 949
            +YSDAGTPRD  S Y NAPSPYLPSTP GQPMTP+SASYLPGTPGGQPMTPGT GLD MS
Sbjct: 868  SYSDAGTPRDHGSAYANAPSPYLPSTP-GQPMTPSSASYLPGTPGGQPMTPGT-GLDVMS 925

Query: 950  PVIGADNEGPWFMPDILV--RRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNE 1007
            PVIG D E  WFMPDILV   ++GE++ VGVIR+V  DG+C+V LGSSG GDTI ALP+E
Sbjct: 926  PVIGGDAEA-WFMPDILVDIHKAGEDTDVGVIRDV-SDGTCKVSLGSSGEGDTIMALPSE 983

Query: 1008 IEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP 1065
            +EI+PPRK+D++KI+GG +RG+TGKLIG+DG+DGIVK+D +LDVKILD+A+LAK  QP
Sbjct: 984  LEIIPPRKSDRVKIVGGQYRGSTGKLIGIDGSDGIVKIDDNLDVKILDLALLAKFVQP 1041

May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex.
Arabidopsis thaliana (taxid: 3702)

>sp\|O80770\|SPT52_ARATH Putative transcription elongation factor SPT5 homolog 2 OS=Arabidopsis thaliana GN=At2g34210 PE=2 SV=2	Back alignment and function description

>sp\|O55201\|SPT5H_MOUSE Transcription elongation factor SPT5 OS=Mus musculus GN=Supt5h PE=1 SV=1	Back alignment and function description

>sp\|Q5ZI08\|SPT5H_CHICK Transcription elongation factor SPT5 OS=Gallus gallus GN=SUPT5H PE=2 SV=1	Back alignment and function description

>sp\|O00267\|SPT5H_HUMAN Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1 SV=1	Back alignment and function description

>sp\|Q5R405\|SPT5H_PONAB Transcription elongation factor SPT5 OS=Pongo abelii GN=SUPT5H PE=2 SV=1	Back alignment and function description

>sp\|Q9DDT5\|SPT5H_DANRE Transcription elongation factor SPT5 OS=Danio rerio GN=supt5h PE=1 SV=1	Back alignment and function description

>sp\|Q9V460\|SPT5H_DROME Transcription elongation factor SPT5 OS=Drosophila melanogaster GN=Spt5 PE=1 SV=1	Back alignment and function description

>sp\|Q21338\|SPT5H_CAEEL Transcription elongation factor SPT5 OS=Caenorhabditis elegans GN=spt-5 PE=3 SV=3	Back alignment and function description

>sp\|Q4PIC4\|SPT5_USTMA Transcription elongation factor SPT5 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SPT5 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1065
255570428		1045	suppressor of ty, putative [Ricinus comm	0.938	0.956	0.842	0.0
449462178		1044	PREDICTED: putative transcription elonga	0.895	0.913	0.822	0.0
224105299		1042	global transcription factor group [Popul	0.923	0.944	0.812	0.0
359492305		1034	PREDICTED: putative transcription elonga	0.934	0.962	0.809	0.0
359492307		1044	PREDICTED: putative transcription elonga	0.934	0.953	0.801	0.0
356515975		1039	PREDICTED: putative transcription elonga	0.893	0.916	0.814	0.0
356509328		1050	PREDICTED: putative transcription elonga	0.893	0.906	0.813	0.0
147838939		1107	hypothetical protein VITISV_043874 [Viti	0.914	0.879	0.783	0.0
357463691		1040	Global transcription factor group [Medic	0.901	0.923	0.795	0.0
334186403		1041	global transcription factor group A2 [Ar	0.965	0.987	0.738	0.0

>gi\|255570428\|ref\|XP_002526173.1\| suppressor of ty, putative [Ricinus communis] gi\|223534550\|gb\|EEF36249.1\| suppressor of ty, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1681 bits (4354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 871/1034 (84%), Positives = 946/1034 (91%), Gaps = 34/1034 (3%)

Query: 39   SSRKRRRSQFIDDVAEEDDEEEEEDYDDDEDYGGGGGAARKPKAKRRSGSEFFDLEAQVD 98
            S+RKRRRS FIDDVAEEDDEEEEE+YD+D+D  GGGGA ++ KAK  SG +FFDLEA+VD
Sbjct: 39   SNRKRRRSDFIDDVAEEDDEEEEEEYDEDDDDYGGGGAGKRQKAKASSGKQFFDLEAEVD 98

Query: 99   SDEEEDEEEGEDD-FIVDGGAELPDEDGGRGIHRRPLLPREDEQEDVEALERRIQARYAR 157
            SDEEE+E++  +D FIVD GA+LPDED GR +HRRPLLPRED+QED+EALERRIQARYAR
Sbjct: 99   SDEEEEEDDDAEDDFIVDNGADLPDEDDGRRVHRRPLLPREDDQEDMEALERRIQARYAR 158

Query: 158  SSHTEYDEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSV 217
            SSHTEYDEETT+VEQQALLPSVRDPKLWMVKCAIGRERE AVCLMQK IDKGSELQIRS 
Sbjct: 159  SSHTEYDEETTEVEQQALLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSA 218

Query: 218  IALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDT 277
            IALDHLKNYIYIEADKEAHV+EACKGLRNIY+QK+MLVPI+EMTDVL+VESKAIDLSRDT
Sbjct: 219  IALDHLKNYIYIEADKEAHVREACKGLRNIYAQKIMLVPIKEMTDVLSVESKAIDLSRDT 278

Query: 278  WVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRF 337
            WVRMKIG YKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKK FVPPPRF
Sbjct: 279  WVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKAFVPPPRF 338

Query: 338  MNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELE 397
            MNVDEARELHIRVERRRDPM+GDYFENIGGMLFKDGFLYKTVSMKSIS QNI+PTFDELE
Sbjct: 339  MNVDEARELHIRVERRRDPMSGDYFENIGGMLFKDGFLYKTVSMKSISVQNIKPTFDELE 398

Query: 398  KFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRP 457
            KFR PGEN + DI  LSTLFANRKKGHF+KGDAVI++KGDLKNLKGWVEKVDEENVHI+P
Sbjct: 399  KFRKPGEN-DGDIVGLSTLFANRKKGHFVKGDAVIIVKGDLKNLKGWVEKVDEENVHIKP 457

Query: 458  EMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIR 517
            EMK LP+T+AVN KELCKYFEPGNHVKVVSGTQ GATGMV+KVEQHVLIILSDTTKE IR
Sbjct: 458  EMKDLPRTIAVNEKELCKYFEPGNHVKVVSGTQEGATGMVVKVEQHVLIILSDTTKEHIR 517

Query: 518  VFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVAL 577
            VFADDVVESSEVTTG+TKIGDYEL DLVLLDN SFGVIIRVESEAFQVLKGVP+RPEVAL
Sbjct: 518  VFADDVVESSEVTTGVTKIGDYELHDLVLLDNMSFGVIIRVESEAFQVLKGVPERPEVAL 577

Query: 578  VKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHL 637
            V+LREIKCK+EKK NVQDR KNT+AVKDVVRI++GPCKGKQGPVEHIY+G+LFI+DRHHL
Sbjct: 578  VRLREIKCKIEKKFNVQDRYKNTIAVKDVVRIIDGPCKGKQGPVEHIYKGVLFIYDRHHL 637

Query: 638  EHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSPGRYSRGGPP--AGG 695
            EHAGFICAKS SC+VVGG+RANGDRNGD+YSRF+S +TPPR+PQSP R+ RGGPP  +GG
Sbjct: 638  EHAGFICAKSHSCIVVGGTRANGDRNGDSYSRFSSFKTPPRVPQSPRRFPRGGPPFESGG 697

Query: 696  RNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVV--TVDRSMIS 753
            RNRGGRGGHDALVGTTVK+RLGP+KGYRGRVV++KG SVRVELESQMKV+    DR+ IS
Sbjct: 698  RNRGGRGGHDALVGTTVKIRLGPFKGYRGRVVEIKGPSVRVELESQMKVILGKFDRNNIS 757

Query: 754  DNVVVSTPYRYIELFFILFYHFLMLKLTVHVIMFCSDTPRYGMGSETPMHPSRTPLHPYM 813
            DNVV+STP+R                          D+ RYGMGSETPMHPSRTPLHPYM
Sbjct: 758  DNVVISTPHR--------------------------DSSRYGMGSETPMHPSRTPLHPYM 791

Query: 814  TPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRA 873
            TPMRDAGATPIHDGMRTPMRDRAWNPY PMSPPRDNWEDGNP SWGTSP YQPGSPPSRA
Sbjct: 792  TPMRDAGATPIHDGMRTPMRDRAWNPYAPMSPPRDNWEDGNPASWGTSPHYQPGSPPSRA 851

Query: 874  YEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTP 933
            YEAPTPGSGWA+TPGG+YSDAGTPRDSSS Y NAPSPYLPSTPGGQPMTP+SA+YLPGTP
Sbjct: 852  YEAPTPGSGWANTPGGSYSDAGTPRDSSSAYANAPSPYLPSTPGGQPMTPSSAAYLPGTP 911

Query: 934  GGQPMTPGTGGLDAMSPVIGADNEGPWFMPDIL--VRRSGEESVVGVIREVLPDGSCRVV 991
            GGQPMTPGTGGLD MSPVIG DNEGPW+MPDIL  VR++ ++S +GVIR+VL DGSCRVV
Sbjct: 912  GGQPMTPGTGGLDVMSPVIGGDNEGPWYMPDILVNVRKAADDSAIGVIRDVLADGSCRVV 971

Query: 992  LGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDV 1051
            LG++GNG+TITALPNEIEIV PRK+DKIKIMGG HRGATGKLIGVDGTDGIVKVD +LDV
Sbjct: 972  LGANGNGETITALPNEIEIVVPRKSDKIKIMGGAHRGATGKLIGVDGTDGIVKVDDTLDV 1031

Query: 1052 KILDMAILAKLAQP 1065
            KILDM ILAKLAQP
Sbjct: 1032 KILDMVILAKLAQP 1045

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449462178\|ref\|XP_004148818.1\| PREDICTED: putative transcription elongation factor SPT5 homolog 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224105299\|ref\|XP_002313759.1\| global transcription factor group [Populus trichocarpa] gi\|222850167\|gb\|EEE87714.1\| global transcription factor group [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359492305\|ref\|XP_002265283.2\| PREDICTED: putative transcription elongation factor SPT5 homolog 1-like isoform 1 [Vitis vinifera] gi\|302142757\|emb\|CBI19960.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359492307\|ref\|XP_003634397.1\| PREDICTED: putative transcription elongation factor SPT5 homolog 1-like isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356515975\|ref\|XP_003526672.1\| PREDICTED: putative transcription elongation factor SPT5 homolog 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356509328\|ref\|XP_003523402.1\| PREDICTED: putative transcription elongation factor SPT5 homolog 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|147838939\|emb\|CAN68098.1\| hypothetical protein VITISV_043874 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357463691\|ref\|XP_003602127.1\| Global transcription factor group [Medicago truncatula] gi\|355491175\|gb\|AES72378.1\| Global transcription factor group [Medicago truncatula]	Back alignment and taxonomy information

>gi\|334186403\|ref\|NP_192575.3\| global transcription factor group A2 [Arabidopsis thaliana] gi\|374095445\|sp\|Q9STN3.2\|SPT51_ARATH RecName: Full=Putative transcription elongation factor SPT5 homolog 1 gi\|332657229\|gb\|AEE82629.1\| global transcription factor group A2 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1065
TAIR\|locus:2040954		989	AT2G34210 [Arabidopsis thalian	0.714	0.769	0.591	5e-234
UNIPROTKB\|Q5ZI08		1079	SUPT5H "Transcription elongati	0.723	0.714	0.351	5.4e-115
MGI\|MGI:1202400		1082	Supt5 "suppressor of Ty 5" [Mu	0.725	0.714	0.346	2.3e-114
UNIPROTKB\|E9PTB2		1083	E9PTB2 "Uncharacterized protei	0.725	0.713	0.346	2.9e-114
ZFIN\|ZDB-GENE-001207-1		1084	supt5h "suppressor of Ty 5 hom	0.571	0.561	0.355	3.8e-114
UNIPROTKB\|Q5R405		1083	SUPT5H "Transcription elongati	0.725	0.713	0.345	1.4e-112
UNIPROTKB\|O00267		1087	SUPT5H "Transcription elongati	0.726	0.712	0.343	1.8e-112
UNIPROTKB\|I3LA48		1083	SUPT5H "Uncharacterized protei	0.726	0.714	0.343	2.3e-112
UNIPROTKB\|I3LMJ9		1088	SUPT5H "Uncharacterized protei	0.726	0.711	0.343	2.3e-112
UNIPROTKB\|E2RLS8		1087	SUPT5H "Uncharacterized protei	0.726	0.712	0.343	3.8e-112

TAIR\|locus:2040954 AT2G34210 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2257 (799.6 bits), Expect = 5.0e-234, P = 5.0e-234
 Identities = 490/829 (59%), Positives = 579/829 (69%)

Query:   112 FIVDGGAELPDEDGGRGIHRRPLLPR--EDEQEDVEALERRIQARYA-RSSHTEYD-EET 167
             FIV G A+LP+ED     HRR    R     +EDV+ LE+R   R + + +  +Y+ ++ 
Sbjct:    98 FIVSGEADLPNEDSD---HRRQYYQRGFHPHEEDVDELEKRTLERLSTKYAKDDYELDDV 154

Query:   168 TDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYI 227
              DV+QQALLPSVRDPKLW+VKCAIGRERE AVCLMQK +D+GSE +IRS IALDHL+NY+
Sbjct:   155 NDVDQQALLPSVRDPKLWLVKCAIGREREVAVCLMQKIVDRGSEFKIRSAIALDHLQNYV 214

Query:   228 YIEADKEAHVKEACKGLRNIYS-QKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNY 286
             YIEAD EAHVKEA KG+RNIY+ QK++LVPI+EMT VL+VESKAIDLSRD+WVRMK+G Y
Sbjct:   215 YIEADMEAHVKEAIKGMRNIYANQKILLVPIKEMTAVLSVESKAIDLSRDSWVRMKLGIY 274

Query:   287 KGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEAREL 346
             KGDLA+VVDVDNVR+RVTVKLIPRIDLQALANKLEG E  KKK F PPPRFMN+DEAREL
Sbjct:   275 KGDLAQVVDVDNVRKRVTVKLIPRIDLQALANKLEGTENVKKKAFAPPPRFMNIDEAREL 334

Query:   347 HIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENG 406
             HIRVE RRDPMTGDYFENIGGMLFKDGFLYK VS KSI+AQN+ PTFDELE+F+ P ENG
Sbjct:   335 HIRVEHRRDPMTGDYFENIGGMLFKDGFLYKKVSTKSIAAQNVTPTFDELERFKRPNENG 394

Query:   407 ESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTL 466
             E D    STLFANRKKGHFMKGDAVIVIKGDLKNLKGW+EKVDEENV IR EMK LP  +
Sbjct:   395 EIDFVDESTLFANRKKGHFMKGDAVIVIKGDLKNLKGWIEKVDEENVLIRSEMKDLPNPI 454

Query:   467 AVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVES 526
             AVN +ELCKYFEPGN VKVVSG   G TGM++KV+QH+LIILSDTTKE I VFAD V +S
Sbjct:   455 AVNGRELCKYFEPGNFVKVVSGIHEGGTGMIVKVDQHMLIILSDTTKEHICVFADHVAKS 514

Query:   527 SEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCK 586
             +EVT G+TKIGDYEL DLV+L + SFGVI++++SEA Q+LKGVPD  EV++VK  EIK K
Sbjct:   515 AEVTKGVTKIGDYELHDLVILSDFSFGVILKLDSEAIQILKGVPDSSEVSIVKASEIKYK 574

Query:   587 LEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAK 646
             + KK NVQDR KN VAVKDVVR++EGP KGKQGPV  IY+G+LFIHDRH+LEH GFIC +
Sbjct:   575 IWKKINVQDRYKNVVAVKDVVRVIEGPSKGKQGPVVQIYKGVLFIHDRHNLEHTGFICTR 634

Query:   647 SSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSPGRYSXXX------XXXXXXXXXX 700
              SSCV+ GG+                 +TP  +P SP R+                    
Sbjct:   635 CSSCVLAGGN----------------FKTPALVPPSPRRFQRADMGYNPGAGGRHQGGRG 678

Query:   701 XXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNV--VV 758
                 D LVGT VK+RLGP+KGY GR+V+VK + VRVELE+  K+VTV+R  ISD    VV
Sbjct:   679 RRGDDHLVGTYVKIRLGPFKGYSGRLVEVKDKLVRVELEA--KIVTVERKAISDMTDNVV 736

Query:   759 STPYRYIELFFILFYHFLMLKLTVHVIMFCSDTPRYGMGSETPM-HPSRTPLHPYM-TPM 816
             +TP +Y               +     M  S TP +     TPM H   TP+H  M TPM
Sbjct:   737 ATP-QY--------------NMGSQTPMHPSRTPLHPC--MTPMRHSGATPIHDGMRTPM 779

Query:   817 RDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGS-WGTS-P---QYQPGSPPS 871
             R     P      +P RD  W    P S     +E   PGS WG+S P    Y+    P 
Sbjct:   780 RGRAWNPYMP--MSPPRDN-WEDGNPGSWGTSPYEAATPGSDWGSSTPGRSSYRDAGTPI 836

Query:   872 RAYEAPTP-----GSGWASTPGGNYSDAGTPRDSSSTYV--NAPSPYLP 913
                 AP+P      S   +TPGG     GT  D  S  +  +A + ++P
Sbjct:   837 NNANAPSPMTPSSTSYLPTTPGGQAMTPGTDLDVMSLDIGGDAETRFIP 885

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IEA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA

UNIPROTKB\|Q5ZI08 SUPT5H "Transcription elongation factor SPT5" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1202400 Supt5 "suppressor of Ty 5" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PTB2 E9PTB2 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-001207-1 supt5h "suppressor of Ty 5 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5R405 SUPT5H "Transcription elongation factor SPT5" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

UNIPROTKB\|O00267 SUPT5H "Transcription elongation factor SPT5" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LA48 SUPT5H "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LMJ9 SUPT5H "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RLS8 SUPT5H "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O55201	SPT5H_MOUSE	No assigned EC number	0.3317	0.8638	0.8502	yes	no
Q9DDT5	SPT5H_DANRE	No assigned EC number	0.3373	0.8234	0.8090	yes	no
Q5ZI08	SPT5H_CHICK	No assigned EC number	0.3443	0.8619	0.8507	yes	no
O00267	SPT5H_HUMAN	No assigned EC number	0.3301	0.8563	0.8390	yes	no
Q9V460	SPT5H_DROME	No assigned EC number	0.3103	0.8253	0.8153	yes	no
Q9STN3	SPT51_ARATH	No assigned EC number	0.7384	0.9652	0.9875	yes	no
Q5R405	SPT5H_PONAB	No assigned EC number	0.3350	0.8244	0.8107	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1065
COG5164		607	COG5164, SPT5, Transcription elongation factor [Tr	2e-39
cd09888		86	cd09888, NGN_Euk, Eukaryotic N-Utilization Substan	4e-39
pfam03439		84	pfam03439, Spt5-NGN, Early transcription elongatio	2e-28
cd06086		58	cd06086, KOW_Spt5_6, KOW domain of Spt5, repeat 6	2e-20
cd06085		52	cd06085, KOW_Spt5_5, KOW domain of Spt5, repeat 5	2e-19
cd06083		51	cd06083, KOW_Spt5_3, KOW domain of Spt5, repeat 3	2e-18
cd06084		43	cd06084, KOW_Spt5_4, KOW domain of Spt5, repeat 4	1e-16
cd06081		38	cd06081, KOW_Spt5_1, KOW domain of Spt5, repeat 1	1e-15
cd06082		51	cd06082, KOW_Spt5_2, KOW domain of Spt5, repeat 2	1e-14
smart01104		121	smart01104, CTD, Spt5 C-terminal nonapeptide repea	2e-12
smart00738		106	smart00738, NGN, In Spt5p, this domain may confer	1e-10
pfam11942		92	pfam11942, Spt5_N, Spt5 transcription elongation f	4e-10
PRK08559		153	PRK08559, nusG, transcription antitermination prot	5e-09
TIGR00405		145	TIGR00405, L26e_arch, ribosomal protein L24p/L26e,	6e-07
pfam04147		809	pfam04147, Nop14, Nop14-like family	1e-06
pfam04006		613	pfam04006, Mpp10, Mpp10 protein	3e-06
pfam04931		784	pfam04931, DNA_pol_phi, DNA polymerase phi	6e-06
pfam05285		317	pfam05285, SDA1, SDA1	8e-06
pfam05793		528	pfam05793, TFIIF_alpha, Transcription initiation f	8e-06
pfam04147		809	pfam04147, Nop14, Nop14-like family	1e-05
cd09887		82	cd09887, NGN_Arch, Archaeal N-Utilization Substanc	1e-05
COG3343		175	COG3343, RpoE, DNA-directed RNA polymerase, delta	1e-05
pfam11942		92	pfam11942, Spt5_N, Spt5 transcription elongation f	3e-05
pfam03344		715	pfam03344, Daxx, Daxx Family	6e-05
COG5271		4600	COG5271, MDN1, AAA ATPase containing von Willebran	8e-05
pfam04147		809	pfam04147, Nop14, Nop14-like family	9e-05
pfam04931		784	pfam04931, DNA_pol_phi, DNA polymerase phi	1e-04
COG5271		4600	COG5271, MDN1, AAA ATPase containing von Willebran	1e-04
pfam07093		557	pfam07093, SGT1, SGT1 protein	1e-04
pfam05793		528	pfam05793, TFIIF_alpha, Transcription initiation f	2e-04
pfam02724		583	pfam02724, CDC45, CDC45-like protein	2e-04
COG4547		620	COG4547, CobT, Cobalamin biosynthesis protein CobT	4e-04
COG5271		4600	COG5271, MDN1, AAA ATPase containing von Willebran	5e-04
COG5137		279	COG5137, COG5137, Histone chaperone involved in ge	5e-04
PRK05901		509	PRK05901, PRK05901, RNA polymerase sigma factor; P	6e-04
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	6e-04
pfam03153		332	pfam03153, TFIIA, Transcription factor IIA, alpha/	7e-04
COG3343		175	COG3343, RpoE, DNA-directed RNA polymerase, delta	0.001
COG5271		4600	COG5271, MDN1, AAA ATPase containing von Willebran	0.001
pfam02724		583	pfam02724, CDC45, CDC45-like protein	0.001
PHA03169		413	PHA03169, PHA03169, hypothetical protein; Provisio	0.001
pfam05793		528	pfam05793, TFIIF_alpha, Transcription initiation f	0.002
COG5271		4600	COG5271, MDN1, AAA ATPase containing von Willebran	0.002
pfam03343		603	pfam03343, SART-1, SART-1 family	0.002
pfam11705		221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	0.002
pfam03985		431	pfam03985, Paf1, Paf1	0.002
pfam00467		32	pfam00467, KOW, KOW motif	0.002
COG5406		1001	COG5406, COG5406, Nucleosome binding factor SPN, S	0.003
pfam12619		145	pfam12619, MCM2_N, Mini-chromosome maintenance pro	0.003
PRK02363		129	PRK02363, PRK02363, DNA-directed RNA polymerase su	0.003
pfam05285		317	pfam05285, SDA1, SDA1	0.004

>gnl\|CDD\|227493 COG5164, SPT5, Transcription elongation factor [Transcription]	Back alignment and domain information

 Score =  155 bits (393), Expect = 2e-39
 Identities = 134/653 (20%), Positives = 203/653 (31%), Gaps = 102/653 (15%)

Query: 333 PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPT 392
            PP+  N   A  L      +RD     Y        + DGFL K   +         PT
Sbjct: 6   APPQLFNPTMALRLDQANLYKRDDRHFTY----KNEDYIDGFLVKVKRISERETLMRIPT 61

Query: 393 FDELEKFRTPGENGESDIASLSTLFANRKKGH--FMKGDAVIVIKGDLKNLKGWVEKVDE 450
            DE   F       + D+ S    F   KK H  F  GDA+ V++G+ +   G V +  E
Sbjct: 62  NDEKNVFSI--ICKDLDLYSYVESF---KKQHAVFQPGDALEVLRGEQRGRVGVVPRQKE 116

Query: 451 ENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSD 510
               +          L      L K F  G+ VKV+ G +    G V +++   +   S+
Sbjct: 117 MIETMTYHF-EQR--LCGPWGRLRKGFYKGDLVKVIEGGEMVDIGTVPRIDGEKVTFNSE 173

Query: 511 TTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVP 570
             K +  + +  + +S + T   +    Y+L D V L       I  ++ +  +V+    
Sbjct: 174 NFKSESTIKSRGLSKSIDTTATSS---IYKLHDYVDLFLEKVACINSIDFDVEKVID--- 227

Query: 571 DRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVR-------IVEGPCKGKQGPVEH 623
                 L ++    C +     V+      + +    R       +VE      +G    
Sbjct: 228 -----ELGEVHTA-CPISIGDKVRVTRGELIGMDGNGREISIGDAVVESRGGKFEGQSLG 281

Query: 624 IYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSP 683
           I +   F       E+ G       +  +V  ++   +       + N    PP      
Sbjct: 282 IVKHFDFGETVSIKENNGVFVKIEGNVCIVA-TKDFTESLKVDLDKMN----PPVT---- 332

Query: 684 GRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMK 743
                   P          G D  +G TV++R G YKG+ G V DV     RVEL S  K
Sbjct: 333 ---VNLQNPKTNELERKIVGRDPAIGKTVRIRCGEYKGHLGVVKDVDRNIARVELHSNNK 389

Query: 744 VVTVDRSMISDNVVVSTPYRYIELFFILFYHFLMLKLTVHVIMFCSDTPRYGMGSETPMH 803
            VT+++S +                         L      I +     R G+       
Sbjct: 390 FVTIEKSRL-----------------------AYLGREGEGITYDELVNRRGLSKPLRYS 426

Query: 804 PSRTPLHP-YMTPMRDAGATPI---HDGMRTPMRDRAWN--PYTP-MSPPRDNWEDGNP- 855
            +     P Y T    AGA        G RTP     W   P TP ++ P  +W D    
Sbjct: 427 EAIGSKTPNYATGGIAAGAAATSSGLSGYRTP----GWKDGPKTPALNDPGIDWGDEKDN 482

Query: 856 ----------GSWGTSPQYQPGSPPSRAYEAPTPGSG-WASTPGGN-------YSDAGTP 897
                     G       Y+ G   +      T  S      P  N           GT 
Sbjct: 483 WYKGSLIHALGKGLALEDYRDGLFMTAWKGQATSASEISFVQPRWNNLVCVLDGEKKGTC 542

Query: 898 RDSSSTYVNAPSPYLPSTPGGQ---PMTPNSASYLPGTPGGQPMTPGTGGLDA 947
              +    +     + ST G     PM  NS     G           G   A
Sbjct: 543 GILNGINGDWGGTVIRSTKGSVVHWPMNDNSKKIYDGGASAWG-NQDDGNRSA 594

Length = 607

>gnl\|CDD\|193577 cd09888, NGN_Euk, Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)	Back alignment and domain information

>gnl\|CDD\|217558 pfam03439, Spt5-NGN, Early transcription elongation factor of RNA pol II, NGN section	Back alignment and domain information

>gnl\|CDD\|240510 cd06086, KOW_Spt5_6, KOW domain of Spt5, repeat 6	Back alignment and domain information

>gnl\|CDD\|240509 cd06085, KOW_Spt5_5, KOW domain of Spt5, repeat 5	Back alignment and domain information

>gnl\|CDD\|240507 cd06083, KOW_Spt5_3, KOW domain of Spt5, repeat 3	Back alignment and domain information

>gnl\|CDD\|240508 cd06084, KOW_Spt5_4, KOW domain of Spt5, repeat 4	Back alignment and domain information

>gnl\|CDD\|240505 cd06081, KOW_Spt5_1, KOW domain of Spt5, repeat 1	Back alignment and domain information

>gnl\|CDD\|240506 cd06082, KOW_Spt5_2, KOW domain of Spt5, repeat 2	Back alignment and domain information

>gnl\|CDD\|215026 smart01104, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4	Back alignment and domain information

>gnl\|CDD\|197850 smart00738, NGN, In Spt5p, this domain may confer affinity for Spt4p	Back alignment and domain information

>gnl\|CDD\|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic N-terminal	Back alignment and domain information

>gnl\|CDD\|181467 PRK08559, nusG, transcription antitermination protein NusG; Validated	Back alignment and domain information

>gnl\|CDD\|129499 TIGR00405, L26e_arch, ribosomal protein L24p/L26e, archaeal	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|217840 pfam04006, Mpp10, Mpp10 protein	Back alignment and domain information

>gnl\|CDD\|218333 pfam04931, DNA_pol_phi, DNA polymerase phi	Back alignment and domain information

>gnl\|CDD\|218538 pfam05285, SDA1, SDA1	Back alignment and domain information

>gnl\|CDD\|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|193576 cd09887, NGN_Arch, Archaeal N-Utilization Substance G (NusG) N-terminal (NGN) domain	Back alignment and domain information

>gnl\|CDD\|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit [Transcription]	Back alignment and domain information

>gnl\|CDD\|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic N-terminal	Back alignment and domain information

>gnl\|CDD\|217503 pfam03344, Daxx, Daxx Family	Back alignment and domain information

>gnl\|CDD\|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|218333 pfam04931, DNA_pol_phi, DNA polymerase phi	Back alignment and domain information

>gnl\|CDD\|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|219293 pfam07093, SGT1, SGT1 protein	Back alignment and domain information

>gnl\|CDD\|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)	Back alignment and domain information

>gnl\|CDD\|217203 pfam02724, CDC45, CDC45-like protein	Back alignment and domain information

>gnl\|CDD\|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|227466 COG5137, COG5137, Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>gnl\|CDD\|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit	Back alignment and domain information

>gnl\|CDD\|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit [Transcription]	Back alignment and domain information

>gnl\|CDD\|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|217203 pfam02724, CDC45, CDC45-like protein	Back alignment and domain information

>gnl\|CDD\|223003 PHA03169, PHA03169, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)	Back alignment and domain information

>gnl\|CDD\|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|217502 pfam03343, SART-1, SART-1 family	Back alignment and domain information

>gnl\|CDD\|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31	Back alignment and domain information

>gnl\|CDD\|217829 pfam03985, Paf1, Paf1	Back alignment and domain information

>gnl\|CDD\|144165 pfam00467, KOW, KOW motif	Back alignment and domain information

>gnl\|CDD\|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2	Back alignment and domain information

>gnl\|CDD\|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta; Reviewed	Back alignment and domain information

>gnl\|CDD\|218538 pfam05285, SDA1, SDA1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1065
KOG1999		1024	consensus RNA polymerase II transcription elongati	100.0
COG5164		607	SPT5 Transcription elongation factor [Transcriptio	100.0
KOG1999		1024	consensus RNA polymerase II transcription elongati	100.0
PRK08559		153	nusG transcription antitermination protein NusG; V	99.87
PF03439		84	Spt5-NGN: Early transcription elongation factor of	99.87
COG5164		607	SPT5 Transcription elongation factor [Transcriptio	99.81
TIGR00405		145	L26e_arch ribosomal protein L24p/L26e, archaeal. T	99.74
COG0250		178	NusG Transcription antiterminator [Transcription]	99.59
KOG0260		1605	consensus RNA polymerase II, large subunit [Transc	99.34
PF11942		97	Spt5_N: Spt5 transcription elongation factor, acid	99.33
PRK05609		181	nusG transcription antitermination protein NusG; V	99.31
TIGR00922		172	nusG transcription termination/antitermination fac	99.22
TIGR01956		258	NusG_myco NusG family protein. This model represen	99.22
KOG0260		1605	consensus RNA polymerase II, large subunit [Transc	99.21
PF12815		123	CTD: Spt5 C-terminal nonapeptide repeat binding Sp	99.03
PF12815		123	CTD: Spt5 C-terminal nonapeptide repeat binding Sp	98.85
smart00738		106	NGN In Spt5p, this domain may confer affinity for	98.84
PRK09014		162	rfaH transcriptional activator RfaH; Provisional	98.83
TIGR01955		159	RfaH transcriptional activator RfaH. This model re	98.76
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.92
KOG2837		309	consensus Protein containing a U1-type Zn-finger a	97.77
PF00467		32	KOW: KOW motif; InterPro: IPR005824 Ribosomes are	97.39
PF04931		784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	97.1
PF10446		458	DUF2457: Protein of unknown function (DUF2457); In	96.8
PF00467		32	KOW: KOW motif; InterPro: IPR005824 Ribosomes are	96.76
KOG4315		455	consensus G-patch nucleic acid binding protein [Ge	96.67
PF02357		92	NusG: Transcription termination factor nusG; Inter	96.66
PRK12281		76	rplX 50S ribosomal protein L24; Reviewed	95.99
smart00739		28	KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i	95.66
smart00739		28	KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i	95.59
TIGR00405		145	L26e_arch ribosomal protein L24p/L26e, archaeal. T	94.82
CHL00141		83	rpl24 ribosomal protein L24; Validated	94.82
PRK00004		105	rplX 50S ribosomal protein L24; Reviewed	94.51
KOG0262		1640	consensus RNA polymerase I, large subunit [Transcr	93.88
KOG1708		236	consensus Mitochondrial/chloroplast ribosomal prot	93.59
TIGR01079		104	rplX_bact ribosomal protein L24, bacterial/organel	93.41
PF04147		840	Nop14: Nop14-like family ; InterPro: IPR007276 Emg	93.38
CHL00141		83	rpl24 ribosomal protein L24; Validated	93.27
PRK08559		153	nusG transcription antitermination protein NusG; V	93.22
PF04147		840	Nop14: Nop14-like family ; InterPro: IPR007276 Emg	93.19
PRK01191		120	rpl24p 50S ribosomal protein L24P; Validated	93.07
TIGR00922		172	nusG transcription termination/antitermination fac	92.84
PRK01191		120	rpl24p 50S ribosomal protein L24P; Validated	92.74
COG0250		178	NusG Transcription antiterminator [Transcription]	92.72
PRK09014		162	rfaH transcriptional activator RfaH; Provisional	92.57
PRK12281		76	rplX 50S ribosomal protein L24; Reviewed	92.2
PF02724		622	CDC45: CDC45-like protein; InterPro: IPR003874 CDC	91.88
PRK05609		181	nusG transcription antitermination protein NusG; V	91.76
PF02724		622	CDC45: CDC45-like protein; InterPro: IPR003874 CDC	91.09
COG0198		104	RplX Ribosomal protein L24 [Translation, ribosomal	91.0
TIGR01080		114	rplX_A_E ribosomal protein L24p/L26e, archaeal/euk	90.92
PTZ00194		143	60S ribosomal protein L26; Provisional	90.65
KOG2038		988	consensus CAATT-binding transcription factor/60S r	90.42
KOG0943		3015	consensus Predicted ubiquitin-protein ligase/hyper	90.38
TIGR01955		159	RfaH transcriptional activator RfaH. This model re	90.34
PRK06763		213	F0F1 ATP synthase subunit alpha; Validated	90.16
PRK00004		105	rplX 50S ribosomal protein L24; Reviewed	90.13
TIGR01080		114	rplX_A_E ribosomal protein L24p/L26e, archaeal/euk	89.99
KOG0943		3015	consensus Predicted ubiquitin-protein ligase/hyper	89.82
PTZ00194		143	60S ribosomal protein L26; Provisional	89.66
TIGR01956		258	NusG_myco NusG family protein. This model represen	89.52
KOG0307		1049	consensus Vesicle coat complex COPII, subunit SEC3	89.01
PTZ00415		2849	transmission-blocking target antigen s230; Provisi	88.79
KOG4156		1329	consensus Claspin, protein mediating phosphorylati	88.25
COG0198		104	RplX Ribosomal protein L24 [Translation, ribosomal	87.38
TIGR01079		104	rplX_bact ribosomal protein L24, bacterial/organel	86.95
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	86.0
PHA03378		991	EBNA-3B; Provisional	85.04
PF04006		600	Mpp10: Mpp10 protein; InterPro: IPR007151 This fam	83.74
PF00524		130	PPV_E1_N: E1 Protein, N terminal domain; InterPro:	82.34
PF14632		92	SPT6_acidic: Acidic N-terminal SPT6	81.81
PTZ00415		2849	transmission-blocking target antigen s230; Provisi	81.52

>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]	Back alignment and domain information

Probab=100.00  E-value=7.2e-216  Score=1883.31  Aligned_cols=943  Identities=49%  Similarity=0.754  Sum_probs=805.0

Q ss_pred             CCCcccccCCCCCCcccccccCCchhhhccc--ccccc-----ccCCCCCCCCCCCCCccCcCCCCCCCcchhhHHHHHH
Q 001506           77 ARKPKAKRRSGSEFFDLEAQVDSDEEEDEEE--GEDDF-----IVDGGAELPDEDGGRGIHRRPLLPREDEQEDVEALER  149 (1065)
Q Consensus        77 ~~~~krk~~~~~~FlD~EAeVdddeEeeeee--~~~~f-----i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~d~ee~~~  149 (1065)
                      +-++|+|+.+...||+.||+||||.||||++  +|+|+     |++.+.+++++..++|.||+.+....   +..|++++
T Consensus        54 ~~~~~~k~~s~~gf~~~e~dvDdeveddd~~~edEed~~~~~~ie~~e~~~~d~~~~~R~~~~~~~~~~---~~~e~~~~  130 (1024)
T KOG1999|consen   54 EPDEKDKKESGGGFIDREADVDDEVEDDDDDEEDEEDIELHNDIEESEEDLPDERGDRRLRRYWDRQLN---ELEEELAK  130 (1024)
T ss_pred             chhhhccccccccccccccccccccccccchhccCcchhhcccchhcccccccccccccchhhhhhhhh---HHHHHHHH
Confidence            4566778888999999999999988776663  34443     55555556665555555555332222   25566666


Q ss_pred             HHHHHhcCCC-CC-CcccchhhhhhhhcCCCCCCCcEEEEEccCchHHHHHHHHHHHHHhhC---CCcceEEEEeeCCCc
Q 001506          150 RIQARYARSS-HT-EYDEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKG---SELQIRSVIALDHLK  224 (1065)
Q Consensus       150 ~l~eRY~~~~-~~-~~~~~~~~v~q~~LlPsv~DP~lw~Vkck~G~Er~vv~~Lm~K~~~~~---~~l~I~Svf~~~~lk  224 (1065)
                      .+++||.... +. ..+++.++|+||+|||+++||+||+|||++|+||++|+|||+||+++.   .+|+|+|||+++|||
T Consensus       131 r~aee~~~~~~~~~~~~~~~d~I~Q~~LLPsvkDP~LW~VKC~iG~Er~~a~~LMrK~i~~~~t~~plqI~Sv~a~D~lk  210 (1024)
T KOG1999|consen  131 RYAEEYIEKYGFEDGDDEDSDDIPQQALLPSVKDPNLWIVKCKIGREREVAFCLMRKFIELDKTDTPLQIKSVFAKDHLK  210 (1024)
T ss_pred             HHHHhhcccccccccchhcccchhHHhhCCCCCCCCeeEEEeccccHHHHHHHHHHHHHhhcccCCCceEEEEEeccccc
Confidence            6666665332 33 333567899999999999999999999999999999999999999975   899999999999999


Q ss_pred             cEEEEEecchHHHHHHHhcCcccceeeeeeeChhhhhhccccccccccCCCCcEEEeecCCCCCCeeEEEEeeCCCCEEE
Q 001506          225 NYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVT  304 (1065)
Q Consensus       225 GYIYIEA~~~~~V~~ai~Gl~~v~~~~~~lVpi~Em~~vL~v~~~~~~l~~G~wVRIk~G~YkGDlAqV~~Vd~~~~~V~  304 (1065)
                      |||||||++|+||++||+||++||.+++.||||+||++||+|.|+.+.|++|+|||||+|+||||||||+.|++++++|+
T Consensus       211 GyIYIEA~KqshV~~Ai~gv~niy~~~~~lVPikEM~dvLkV~K~~v~L~~gswVRiKrG~YKgDLAqVd~Vd~~~n~v~  290 (1024)
T KOG1999|consen  211 GYIYIEADKQSHVKEAIEGVRNIYANRILLVPIKEMPDVLKVVKKVVQLSEGSWVRIKRGKYKGDLAQVDDVDENRNRVR  290 (1024)
T ss_pred             eeEEEEechhHHHHHHHhhhhhheeccEEEEehhHhhhhhhhhhhhhccCccceEEEeccccccceeeeeeecccCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeccchhhhhhhccccccccCCCCCCCCCCCCHHHHHhccccEeeeccCCCCceEEEecCceeccceEEEEEeccce
Q 001506          305 VKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSI  384 (1065)
Q Consensus       305 VkLvPRiD~~~~~~~~~~~~~~kkk~~RPp~rlFn~~e~~~~~~~v~~~r~~~~g~~~~~~~~~~~~dGfL~K~~~i~~l  384 (1065)
                      |||||||||+++..++.  ....+|++||++||||..++++..++++.+++..+|+||++++|++|+||||||.|+|++|
T Consensus       291 lKlIPRIDyq~~~~~~~--~~~~~ka~~p~~R~~~~~~~~~~~ir~~~~~~~~~Gd~l~~~gn~~~~dGFLyK~v~i~sI  368 (1024)
T KOG1999|consen  291 LKLIPRIDYQKLLGKLE--ETTDKKAFRPAPRRPNQKEFDEEAIRSEGRRDHSRGDYLEFEGNELFKDGFLYKDVSISSI  368 (1024)
T ss_pred             EEEeccccHHhhhcccc--ccchhhccCCcccCCCccccchhhhhhccccccccCceEEecCCceeccceeeeeeeccee
Confidence            99999999999998877  3345677899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCChHHhhhccCCCCCCcchhhhhhHhhhcccc-cCcCCCCEEEEecccccCceeEEEEEcCCeEEEeecCCCCC
Q 001506          385 SAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKK-GHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLP  463 (1065)
Q Consensus       385 ~~~~V~PTleEL~kF~~~~~~~~~dl~~ls~~~~~~~~-~~F~~GD~V~V~~Gel~gl~G~V~~V~~d~V~i~~~~~~l~  463 (1065)
                      ++++|+|||+||+||+...+  ++||.+++++++++.+ +.|++||+|+||.|||+|++|+|++|++.+|+|++++++|+
T Consensus       369 ~t~gV~PT~dELekF~~~~e--~~Dl~~~st~~~~r~~~~~F~~GD~VeV~~Gel~glkG~ve~vdg~~vti~~~~e~l~  446 (1024)
T KOG1999|consen  369 ITDGVKPTLDELEKFNPSNE--EGDLEWVSTLKSNRKKKHLFSPGDAVEVIVGELKGLKGKVESVDGTIVTIMSKHEDLK  446 (1024)
T ss_pred             eecCcccCHHHHHhhcCCCc--cccceeeeeeccccccccccCCCCeEEEeeeeeccceeEEEeccCceEEEeeccccCC
Confidence            99999999999999998766  6688888866665554 45999999999999999999999999999999999999999


Q ss_pred             cceeeccccceeeccCCCcEEEeccccCCceeEEEEEeCcEEEEEeCCCCceEEEecccccccccccccccccCceeeee
Q 001506          464 KTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRD  543 (1065)
Q Consensus       464 ~~l~v~~~~LrK~F~~GDhVkVi~G~~~getGlVVkVe~~~v~vlSD~t~~ei~V~~~dL~~~~e~~~g~~~~g~y~l~D  543 (1065)
                      .+|+|++++|||||++|||||||+|+|+|+|||||+|+++.|+||||++|+|++||++||++|++++++++++|+|+|||
T Consensus       447 ~pl~~~~~eLrKyF~~GDhVKVi~G~~eG~tGlVvrVe~~~vi~~Sd~t~eel~Vf~~dlq~c~ev~~gv~~~ge~e~hd  526 (1024)
T KOG1999|consen  447 GPLEVPASELRKYFEPGDHVKVIAGRYEGDTGLVVRVEQGDVILLSDLTMEELKVFARDLQLCSEVTLGVEKSGEYELHD  526 (1024)
T ss_pred             CccccchHhhhhhccCCCeEEEEeccccCCcceEEEEeCCeEEEEecCccceeeEEehhcccchheeecccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeCCCceEEEEEEccceEEEeccCCCCCcEEEEecchhhhccc-CCcccccCCCCeecCCCEEEEEcCCCCCceeeEE
Q 001506          544 LVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLE-KKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVE  622 (1065)
Q Consensus       544 LVqLd~~tVGvIv~verd~~~VL~~~~~~g~v~~v~~~~I~~k~~-~r~~a~D~~gn~I~~~D~Vkvv~Gp~~gr~G~V~  622 (1065)
                      |||||.++||||++++++.|+||+++   |+|++|++++|.+|++ ++++|+|+++|+|+++|+|+++.||++||+|+|+
T Consensus       527 lVqLd~~~vgvI~rle~e~~~vl~~~---g~v~~i~~~~i~~kk~~r~~~~~D~~~n~I~~kD~Vkvi~Gp~~g~~G~v~  603 (1024)
T KOG1999|consen  527 LVQLDNQNVGVIVRLERETFQVLGMN---GKVVTIRKSSITKKKDNRKAVAVDRNGNEIRVKDTVKVIGGPSKGREGEVL  603 (1024)
T ss_pred             eeecCCCcEEEEEEecchheeeecCc---CceEEEeechhhhhhhhhhheeecccCCeecccceEEEecCCCCCccCccc
Confidence            99999999999999999999999985   7999999999999986 5699999999999999999999999999999999


Q ss_pred             EEECCEEEEEecceeccceEEEEeCCceEEeeccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001506          623 HIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSPGRYSRGGPPAGGRNRGGRG  702 (1065)
Q Consensus       623 HI~r~~lFl~~~~~~EN~Gifv~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~sp~~~~~~~~~~gg~~~~~~~  702 (1065)
                      ||||+++|||||+++||+||||||++||.++|++++.. .+....+.|++|+ |.++ ++|++++.+ +.++|+.+++||
T Consensus       604 ~i~r~~~F~h~r~~~En~Gv~vck~k~~~~~g~~~st~-~~~~~~~~l~~ms-P~r~-~sp~~~~~~-~ga~g~~gggrG  679 (1024)
T KOG1999|consen  604 HIYRPFVFLHSRKNLENGGVFVCKEKNLILAGGKKSTN-SLAFNKGALAPMS-PGRI-QSPMGPSGG-PGAFGGHGGGRG  679 (1024)
T ss_pred             eeecceeeeeehhhcccCCeEEEecCCceeccccCccc-chhhcccccCCCC-cccc-cCCcCCCCC-CCCcCcCccCcc
Confidence            99999999999999999999999999999999976421 1111223344443 3322 444433211 112233333444


Q ss_pred             C--CccccCcEEEEeeCCCCCceeEEEeecCCeEEEEecCCCeEEEEecCCccccccccccccchhhhhhhhhhhhcccc
Q 001506          703 G--HDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPYRYIELFFILFYHFLMLKL  780 (1065)
Q Consensus       703 ~--~d~liGktV~I~~GpyKG~~G~Vkd~t~~~~rVELhs~~k~I~V~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  780 (1065)
                      |  ++.+|||||+|+.||||||+|+|||+|+++||||||++|++|+|+|.++..+.+. ..-+            ....|
T Consensus       680 g~rd~~l~GktVrI~~Gp~KG~~GivkD~~~~~arVELhs~~~ti~vd~~~~~~v~~~-~~~g------------~~~sY  746 (1024)
T KOG1999|consen  680 GNRDDSLLGKTVRIRLGPKKGYLGIVKDVNGDTARVELHSKCVTIKVDRLKRKIVGST-RDGG------------ETSSY  746 (1024)
T ss_pred             CcCcchhcCcEEEEecCCcccccceeEeccCCeeEEEEEeccEEEEechhhceEEeec-cCCC------------Ccccc
Confidence            4  4599999999999999999999999999999999999999999999999987642 1111            01135


Q ss_pred             cceeeeccCCCCCC-CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCC
Q 001506          781 TVHVIMFCSDTPRY-GMGSETPMHPSRTPLHP-YMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPR--DNWEDGNPG  856 (1065)
Q Consensus       781 ~~~~p~~~~~tp~y-~~G~~TP~~g~rTP~~~-~~TP~~~g~~TP~~~Gs~TP~~~~aw~p~~p~tp~~--~~~~~~~p~  856 (1065)
                      +.+||+||++||+| ++||+|||||++||+|+ ++||++++++||+|+|+|||||++||+|+.++||++  ++|+++.++
T Consensus       747 g~~~~~~g~~~~~~~~~Gs~tp~~~s~tpl~~~s~tp~~~~~~Tp~~dG~rTP~r~~aW~~~~~~tPa~~~~~~~~g~~g  826 (1024)
T KOG1999|consen  747 GERTPGYGRVTPARYGMGSSTPMYGSNTPLWGGSRTPARDGGATPSHDGSRTPARGRAWNPYNGKTPARNFDNREPGFEG  826 (1024)
T ss_pred             ccccccccccCccccCCCCcCccCCCCCCCCCcccCccccCCCCcCCCCCcCCCCCCCcCCCCCCCCccccCCcccCCCC
Confidence            67999999999988 78999999999999998 899999999999999999999999999999999988  678888888


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCc----CCCCCCCCCCCCC-CCCCCCCCCCCC
Q 001506          857 SWGTSPQYQPGSPPSRAYEAPTPGSGWASTPG-GNYSDAGTPRDSSSTYV----NAPSPYLPSTPGG-QPMTPNSASYLP  930 (1065)
Q Consensus       857 ~~~~tp~y~p~tp~~~~y~~~TPg~~~~~tP~-~~~~~~~tP~~~~~~y~----~~pspy~p~tp~~-~p~tP~~~~y~P  930 (1065)
                      .|+.+|+|.        |.|+|||+.|+.+++ +.|+.+.||....|+|.    ++|+|   +++++ ++||||+.+|.|
T Consensus       827 ~~g~sp~~~--------~~a~Tpg~~~~~~~~~~~~~~~g~~~~~gsa~~~~~~~sps~---sp~~~~~~~tpss~s~~p  895 (1024)
T KOG1999|consen  827 SGGRSPQGY--------YSAPTPGSNWGSTGGGGAPAWPGTPNGNGSAWGPSGQNSPSP---SPWGYQNNPTPSSSSYGP  895 (1024)
T ss_pred             CCCCCCCCC--------cCCCCCCCCCCcCCCCCCcCCCCCCCCCccccccccCCCCCC---CCccCccCCCCcccccCC
Confidence            888777653        678888888877754 45666677755556663    33333   34444 478999999999


Q ss_pred             CCCCC-CCCCCCCCCCCCCCCcCCCCCCCCCccCcEEE-EcCCCcccEEEEEEeCCCCeEEEEeccCCCCceEEecCCCe
Q 001506          931 GTPGG-QPMTPGTGGLDAMSPVIGADNEGPWFMPDILV-RRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEI 1008 (1065)
Q Consensus       931 ~TPg~-~p~tp~~~g~~~~~~~~~~~~~~~W~~~~I~V-~~~g~~~~~GvI~~V~~~g~~~V~l~~~~~g~~v~v~~~~L 1008 (1065)
                      +|||+ +|||||++ ++.++... ++....| .++..+ ...  -++.++||+|.+ |.|+|+|.++  +++++++++||
T Consensus       896 ~tpgg~~~~Tpgs~-~d~~~~~~-~~~~~~~-~~d~~~~~~~--~G~~~~ir~v~~-G~~sv~~~de--~~~~~~s~~~~  967 (1024)
T KOG1999|consen  896 KTPGGGNPMTPGSG-LDSGSGNG-GDGNSSW-GPDTSLDTQL--VGQTGIIRSVAD-GGCSVWLGDE--GETISNSKPHL  967 (1024)
T ss_pred             CCCCCCCCCCCCcc-ccccCCCC-CccceEe-ccccccccee--cccccceeeccC-CceeeecCCC--CcccccccccC
Confidence            99998 89999984 55555432 1222233 344333 111  156889999977 9999999985  78999999999


Q ss_pred             eecCCCCCCcEEEEcCCCCCceEEEEEEeCCCcEEEecCCCceEEEeccchhcccCC
Q 001506         1009 EIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP 1065 (1065)
Q Consensus      1009 E~V~P~kgd~VkVi~G~~rG~tG~LisiD~~dgiVk~d~~~d~kil~~~~L~Kl~~~ 1065 (1065)
                      +++.|.+||.+||+.|.+||.+|+|+++|+.+||||+|.+.++|||++.+||||++|
T Consensus       968 a~~~p~~~d~~k~~~g~~~g~~~~~~~~dg~~g~~~~d~~~~~k~l~~~~~~k~~~~ 1024 (1024)
T KOG1999|consen  968 APAPPCKGDDVKSIWGDDRGSTGKLVGNDGWDGIVRIDETSDIKILNLGLLCKMVSP 1024 (1024)
T ss_pred             ccCCCCCCCCccccccccccccccccCCCcccceecccccccchhhhhhhhhhccCC
Confidence            999999999999999999999999999999999999999999999999999999875

>COG5164 SPT5 Transcription elongation factor [Transcription]	Back alignment and domain information

>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]	Back alignment and domain information

>PRK08559 nusG transcription antitermination protein NusG; Validated	Back alignment and domain information

>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain	Back alignment and domain information

>COG5164 SPT5 Transcription elongation factor [Transcription]	Back alignment and domain information

>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal	Back alignment and domain information

>COG0250 NusG Transcription antiterminator [Transcription]	Back alignment and domain information

>KOG0260 consensus RNA polymerase II, large subunit [Transcription]	Back alignment and domain information

>PF11942 Spt5_N: Spt5 transcription elongation factor, acidic N-terminal; InterPro: IPR022581 This is the very acidic N-terminal domain of the early transcription elongation factor Spt5 []	Back alignment and domain information

>PRK05609 nusG transcription antitermination protein NusG; Validated	Back alignment and domain information

>TIGR00922 nusG transcription termination/antitermination factor NusG	Back alignment and domain information

>TIGR01956 NusG_myco NusG family protein	Back alignment and domain information

>KOG0260 consensus RNA polymerase II, large subunit [Transcription]	Back alignment and domain information

>PF12815 CTD: Spt5 C-terminal nonapeptide repeat binding Spt4; PDB: 2E70_A	Back alignment and domain information

>PF12815 CTD: Spt5 C-terminal nonapeptide repeat binding Spt4; PDB: 2E70_A	Back alignment and domain information

>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p	Back alignment and domain information

>PRK09014 rfaH transcriptional activator RfaH; Provisional	Back alignment and domain information

>TIGR01955 RfaH transcriptional activator RfaH	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]	Back alignment and domain information

>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms	Back alignment and domain information

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar	Back alignment and domain information

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins	Back alignment and domain information

>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms	Back alignment and domain information

>KOG4315 consensus G-patch nucleic acid binding protein [General function prediction only]	Back alignment and domain information

>PF02357 NusG: Transcription termination factor nusG; InterPro: IPR006645 This sequence is identified by the NGN domain and is represented by the bacterial antitermination protein NusG	Back alignment and domain information

>PRK12281 rplX 50S ribosomal protein L24; Reviewed	Back alignment and domain information

>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif	Back alignment and domain information

>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif	Back alignment and domain information

>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal	Back alignment and domain information

>CHL00141 rpl24 ribosomal protein L24; Validated	Back alignment and domain information

>PRK00004 rplX 50S ribosomal protein L24; Reviewed	Back alignment and domain information

>KOG0262 consensus RNA polymerase I, large subunit [Transcription]	Back alignment and domain information

>KOG1708 consensus Mitochondrial/chloroplast ribosomal protein L24 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle	Back alignment and domain information

>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production []	Back alignment and domain information

>CHL00141 rpl24 ribosomal protein L24; Validated	Back alignment and domain information

>PRK08559 nusG transcription antitermination protein NusG; Validated	Back alignment and domain information

>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production []	Back alignment and domain information

>PRK01191 rpl24p 50S ribosomal protein L24P; Validated	Back alignment and domain information

>TIGR00922 nusG transcription termination/antitermination factor NusG	Back alignment and domain information

>PRK01191 rpl24p 50S ribosomal protein L24P; Validated	Back alignment and domain information

>COG0250 NusG Transcription antiterminator [Transcription]	Back alignment and domain information

>PRK09014 rfaH transcriptional activator RfaH; Provisional	Back alignment and domain information

>PRK12281 rplX 50S ribosomal protein L24; Reviewed	Back alignment and domain information

>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46	Back alignment and domain information

>PRK05609 nusG transcription antitermination protein NusG; Validated	Back alignment and domain information

>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46	Back alignment and domain information

>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic	Back alignment and domain information

>PTZ00194 60S ribosomal protein L26; Provisional	Back alignment and domain information

>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]	Back alignment and domain information

>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR01955 RfaH transcriptional activator RfaH	Back alignment and domain information

>PRK06763 F0F1 ATP synthase subunit alpha; Validated	Back alignment and domain information

>PRK00004 rplX 50S ribosomal protein L24; Reviewed	Back alignment and domain information

>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic	Back alignment and domain information

>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PTZ00194 60S ribosomal protein L26; Provisional	Back alignment and domain information

>TIGR01956 NusG_myco NusG family protein	Back alignment and domain information

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PTZ00415 transmission-blocking target antigen s230; Provisional	Back alignment and domain information

>KOG4156 consensus Claspin, protein mediating phosphorylation and activation of Chk1 protein kinase in the DNA replication checkpoint response [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]	Back alignment and domain information

>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PHA03378 EBNA-3B; Provisional	Back alignment and domain information

>PF04006 Mpp10: Mpp10 protein; InterPro: IPR007151 This family includes proteins related to Mpp10 (M phase phosphoprotein 10)	Back alignment and domain information

>PF00524 PPV_E1_N: E1 Protein, N terminal domain; InterPro: IPR014000 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species	Back alignment and domain information

>PF14632 SPT6_acidic: Acidic N-terminal SPT6	Back alignment and domain information

>PTZ00415 transmission-blocking target antigen s230; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1065
3h7h_B		106	Crystal Structure Of The Human Transcription Elonga		1e-17
2do3_A		69	Solution Structure Of The Third Kow Motif Of Transc		4e-07
3qqc_D		163	Crystal Structure Of Archaeal Spt45 BOUND TO THE RN		1e-06
3p8b_B		152	X-Ray Crystal Structure Of Pyrococcus Furiosus Tran		1e-06
2exu_A		200	Crystal Structure Of Saccharomyces Cerevisiae Trans		1e-05
2e70_A		71	Solution Structure Of The Fifth Kow Motif Of Human		1e-04

>pdb|3H7H|B Chain B, Crystal Structure Of The Human Transcription Elongation Factor Dsif, Hspt4HSPT5 (176-273) Length = 106