Citrus Sinensis ID: 001511
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1064 | 2.2.26 [Sep-21-2011] | |||||||
| Q94FB9 | 1337 | ABC transporter D family | yes | no | 0.965 | 0.768 | 0.806 | 0.0 | |
| P16970 | 659 | ATP-binding cassette sub- | yes | no | 0.534 | 0.863 | 0.338 | 6e-93 | |
| P55096 | 659 | ATP-binding cassette sub- | yes | no | 0.534 | 0.863 | 0.337 | 3e-92 | |
| P28288 | 659 | ATP-binding cassette sub- | yes | no | 0.462 | 0.746 | 0.363 | 2e-90 | |
| Q8T8P3 | 741 | ABC transporter D family | yes | no | 0.486 | 0.699 | 0.324 | 4e-85 | |
| Q9UBJ2 | 740 | ATP-binding cassette sub- | no | no | 0.501 | 0.721 | 0.316 | 4e-85 | |
| P33897 | 745 | ATP-binding cassette sub- | no | no | 0.506 | 0.723 | 0.328 | 1e-84 | |
| P48410 | 736 | ATP-binding cassette sub- | no | no | 0.553 | 0.800 | 0.304 | 4e-84 | |
| Q61285 | 741 | ATP-binding cassette sub- | no | no | 0.499 | 0.716 | 0.312 | 2e-82 | |
| Q9QY44 | 741 | ATP-binding cassette sub- | no | no | 0.499 | 0.716 | 0.312 | 1e-81 |
| >sp|Q94FB9|AB1D_ARATH ABC transporter D family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1707 bits (4422), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 831/1031 (80%), Positives = 919/1031 (89%), Gaps = 4/1031 (0%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
MPSLQ L LTE GRG+++SRRK+ILLA+GI+ AGGTA YLKSR +S++PD+ NG D
Sbjct: 1 MPSLQLLQLTERGRGLVASRRKSILLAAGIVAAGGTAVYLKSRVASRRPDSSRLCNGQSD 60
Query: 61 SERKPDKAVANRSN--IKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRT 118
+ +K A N I +K GGLKSLQVL AILLS+MGKMGARDLLALV VV RT
Sbjct: 61 DDETLEKLTATDQNAKITTKKKKGGGLKSLQVLTAILLSQMGKMGARDLLALVATVVFRT 120
Query: 119 ALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKI 178
ALSNRLAKVQGFLFRAAFLRR PLF +LISENI+LCF+LST+HSTSKYITG LSL+FRKI
Sbjct: 121 ALSNRLAKVQGFLFRAAFLRRAPLFLRLISENIMLCFMLSTLHSTSKYITGALSLRFRKI 180
Query: 179 VTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLY 238
+TK+IH+ YFENM YYKISHVDGRITHPEQR+ASDVPRF SELS+L+ DDLTAVTDG+LY
Sbjct: 181 LTKIIHSHYFENMVYYKISHVDGRITHPEQRIASDVPRFSSELSDLILDDLTAVTDGILY 240
Query: 239 TWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAE 298
WRLCSYASPKY+FWILAYVLGAGT +RNFSP+FGKLMSKEQQLEGEYRQLHSRLRTH+E
Sbjct: 241 AWRLCSYASPKYIFWILAYVLGAGTAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSE 300
Query: 299 SIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 358
SIAFYGGE +EESHIQQKFK L HM VLHDHWWFGMIQDFLLKYLGATVAVILIIEPF
Sbjct: 301 SIAFYGGETREESHIQQKFKNLVSHMSHVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 360
Query: 359 FAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMV 418
F+G+L+PD STLGRA+MLSN+RYHTSVIISLFQ+LGTLSISSRRLNRLSGYADRIHELM
Sbjct: 361 FSGHLRPDDSTLGRAEMLSNIRYHTSVIISLFQALGTLSISSRRLNRLSGYADRIHELMA 420
Query: 419 ISRELSIEDKSP-QRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLIT 477
+SRELS +DKS QRN SRNY SEANY+EFS VKVVTPTGNVLVE+LTL+VE GSNLLIT
Sbjct: 421 VSRELSGDDKSSFQRNRSRNYLSEANYVEFSDVKVVTPTGNVLVEDLTLRVEQGSNLLIT 480
Query: 478 GPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPL 537
GPNGSGKSSLFRVLGGLWPLVSGHI KPGVGSDLNKEIFYVPQRPY AVGTLRDQLIYPL
Sbjct: 481 GPNGSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYMAVGTLRDQLIYPL 540
Query: 538 TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597
TS QE E LT GMVELLKNVDLEYLLDRY PEKE+NWGDELSLGEQQRLGMARLFYHKP
Sbjct: 541 TSGQESELLTEIGMVELLKNVDLEYLLDRYQPEKEVNWGDELSLGEQQRLGMARLFYHKP 600
Query: 598 KFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHD 657
KFAILDECTSAVTTDMEERF AKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W VH
Sbjct: 601 KFAILDECTSAVTTDMEERFAAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHY 660
Query: 658 KRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASP 717
KRD S+++T + I+ +KSS+TDRQ+DAM V++AF A+K+SA +N KAQSY +++IA SP
Sbjct: 661 KRDDSALLTDAEIDSVKSSDTDRQNDAMVVQRAFAAARKESA-TNSKAQSYQTQLIARSP 719
Query: 718 IADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDR 777
+ D +V LP FPQ +++ R LP RVA M VL+PT+FDKQGAQLLAVA LVVSRT ISDR
Sbjct: 720 VVDKSVVLPRFPQPQTSQRALPSRVAAMLNVLIPTIFDKQGAQLLAVACLVVSRTLISDR 779
Query: 778 IASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHL 837
IASLNGTTVKYVLEQDKA+FVRLIG+SVLQS ASS IAPS+RHLT RLALGWRIR+TQHL
Sbjct: 780 IASLNGTTVKYVLEQDKAAFVRLIGLSVLQSGASSIIAPSLRHLTQRLALGWRIRLTQHL 839
Query: 838 LKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 897
L++YLR N+FYKVF+MS SIDADQR+T DLEKLT DLSGL+TGMVKPSVDILWFTWRMK
Sbjct: 840 LRNYLRNNAFYKVFHMSGNSIDADQRLTRDLEKLTADLSGLLTGMVKPSVDILWFTWRMK 899
Query: 898 ALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFF 957
LTGQRGVAILY YMLLGLGFLR V P+FGDL EQQLEG FRFMHERL HAES+AFF
Sbjct: 900 LLTGQRGVAILYTYMLLGLGFLRRVAPDFGDLAGEEQQLEGKFRFMHERLNTHAESIAFF 959
Query: 958 GGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKG 1017
GGGAREKAM++ +FR LL+HSL+LL+KKWL+GILDDFVTKQLP+NVTWGLSLLYA+EHKG
Sbjct: 960 GGGAREKAMVDKKFRALLDHSLMLLRKKWLYGILDDFVTKQLPNNVTWGLSLLYALEHKG 1019
Query: 1018 DRALVSTQGEI 1028
DRALVSTQGE+
Sbjct: 1020 DRALVSTQGEL 1030
|
Contributes to the transport of fatty acids and their derivatives (acyl CoAs) across the peroxisomal membrane. Provides acetate to the glyoxylate cycle in developing seedlings. Involved in pollen tube elongation, ovule fertilization, and seeds germination after imbibition (controls the switch between the opposing developmental programs of dormancy and germination), probably by promoting beta-oxidation of storage lipids during gluconeogenesis. Required for biosynthesis of jasmonic acid and conversion of indole butyric acid to indole acetic acid. Confers sensitivity to monofluoroacetic acid (FAc), a toxic acetate analog, and to 2,4-dichlorophenoxybutyric acid (2,4-DB) and indole-3-butyric acid (IBA), two precursors of auxin after beta-oxidation. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 7 |
| >sp|P16970|ABCD3_RAT ATP-binding cassette sub-family D member 3 OS=Rattus norvegicus GN=Abcd3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 343 bits (879), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 205/605 (33%), Positives = 326/605 (53%), Gaps = 36/605 (5%)
Query: 79 NQKKGGLKSLQVLAAILLSEMGK----MGARDL------LALVGIVVLRTALSNRLAKVQ 128
N +K G K V+ + LS + + M R L L+ ++++ +
Sbjct: 47 NNEKEGKKERAVVDKVFLSRLSQILKIMVPRTFCKETGYLILIAVMLVSRTYCDVWMIQN 106
Query: 129 GFLFRAAFLRRVPLFFQLISENILLCF-LLSTMHSTSKYITGTLSLQFRKIVTKLIHTRY 187
G L + + R F+ N + L+S +++ KY L L FR +T+ ++ Y
Sbjct: 107 GTLIESGIIGRSSKDFKRYLFNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTRYLYEEY 166
Query: 188 FENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYAS 247
+ YYK+ ++D RI +P+Q L DV +FC+ + +L + D +LY ++L S
Sbjct: 167 LQAFTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIG 226
Query: 248 PKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGEN 307
+ ++AY+L +G + GK+ EQ+ EGEYR ++SRL T++E IAFY G
Sbjct: 227 AQGPASMMAYLLVSGLFLTRLRRPIGKMTIMEQKYEGEYRFVNSRLITNSEEIAFYNGNK 286
Query: 308 KEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDT 367
+E+ I F+ L H+ + + G I + KY+ V +++ PF P
Sbjct: 287 REKQTIHSVFRKLVEHLHNFIFFRFSMGFIDSIIAKYIATVVGYLVVSRPFL-DLAHPRH 345
Query: 368 STLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISREL---- 423
+++L + +++ + Q+LG + ++ R + RL+G+ RI ELM + ++L
Sbjct: 346 LHSTHSELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGK 405
Query: 424 ------SIEDK-------SPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEP 470
S +DK SP G+ + N I+F V + TP G++L+++L+ +V
Sbjct: 406 YERTMVSQQDKGIEGAQASPLIPGAGEIINADNIIKFDHVPLATPNGDILIQDLSFEVRS 465
Query: 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLR 530
G+N+LI GPNG GKSSLFRVLG LWPL GH+ KP G ++FYVPQRPY +GTLR
Sbjct: 466 GANVLICGPNGCGKSSLFRVLGELWPLFGGHLTKPERG-----KLFYVPQRPYMTLGTLR 520
Query: 531 DQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI-NWGDELSLGEQQRLG 588
DQ+IYP DQ+ + ++ + L NV L ++L+R + +W D LS GE+QR+
Sbjct: 521 DQVIYPDGKEDQKKKGISDQVLKGYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMA 580
Query: 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLD 648
MARLFYHKP+FAILDECTSAV+ D+E+ + R +G + T+SHR +L H+ L +D
Sbjct: 581 MARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHMD 640
Query: 649 GEGEW 653
G G +
Sbjct: 641 GRGNY 645
|
Rattus norvegicus (taxid: 10116) |
| >sp|P55096|ABCD3_MOUSE ATP-binding cassette sub-family D member 3 OS=Mus musculus GN=Abcd3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 340 bits (873), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 204/605 (33%), Positives = 324/605 (53%), Gaps = 36/605 (5%)
Query: 79 NQKKGGLKSLQVLAAILLSEMGK----MGARDL------LALVGIVVLRTALSNRLAKVQ 128
N +K G K V+ + LS + + M R L L+ ++++ +
Sbjct: 47 NNEKEGKKERAVVDKVFLSRLSQILKIMVPRTFCKETGYLLLIAVMLVSRTYCDVWMIQN 106
Query: 129 GFLFRAAFLRRVPLFFQLISENILLCF-LLSTMHSTSKYITGTLSLQFRKIVTKLIHTRY 187
G L + + R F+ N + L+S +++ KY L L FR +T+ ++ Y
Sbjct: 107 GTLIESGIIGRSSKDFKRYLFNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTRYLYEEY 166
Query: 188 FENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYAS 247
+ YYK+ ++D RI +P+Q L DV +FC+ + +L + D +LY ++L S
Sbjct: 167 LQAFTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIG 226
Query: 248 PKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGEN 307
+ ++AY+L +G + GK+ EQ+ EGEYR ++SRL T++E IAFY G
Sbjct: 227 AQGPASMMAYLLVSGLFLTRLRRPIGKMTIMEQKYEGEYRYVNSRLITNSEEIAFYNGNK 286
Query: 308 KEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDT 367
+E+ I F+ L H+ + + G I + KY+ V +++ PF P
Sbjct: 287 REKQTIHSVFRKLVEHLHNFIFFRFSMGFIDSIIAKYVATVVGYLVVSRPFL-DLAHPRH 345
Query: 368 STLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELS--- 424
+++L + +++ + Q+LG + ++ R + RL+G+ RI ELM + ++L+
Sbjct: 346 LHSTHSELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGR 405
Query: 425 ------------IE--DKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEP 470
IE SP G+ + N I+F V + TP G++L+++L+ +V
Sbjct: 406 YERTMVSQQEKGIEGAQASPLVPGAGEIINTDNIIKFDHVPLATPNGDILIQDLSFEVRS 465
Query: 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLR 530
G+N+LI GPNG GKSSLFRVLG LWPL G + KP G ++FYVPQRPY +GTLR
Sbjct: 466 GANVLICGPNGCGKSSLFRVLGELWPLFGGRLTKPERG-----KLFYVPQRPYMTLGTLR 520
Query: 531 DQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI-NWGDELSLGEQQRLG 588
DQ+IYP DQ+ ++ + E L NV L ++L+R + +W D LS GE+QR+
Sbjct: 521 DQVIYPDGKEDQKKRGISDQVLKEYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMA 580
Query: 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLD 648
MARLFYHKP+FAILDECTSAV+ D+E+ + R +G + T+SHR +L H+ L +D
Sbjct: 581 MARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHMD 640
Query: 649 GEGEW 653
G G +
Sbjct: 641 GRGNY 645
|
Mus musculus (taxid: 10090) |
| >sp|P28288|ABCD3_HUMAN ATP-binding cassette sub-family D member 3 OS=Homo sapiens GN=ABCD3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 335 bits (858), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 188/517 (36%), Positives = 291/517 (56%), Gaps = 25/517 (4%)
Query: 156 LLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVP 215
L+S +++ KY L L FR +TK ++ Y + YYK+ ++D RI +P+Q L DV
Sbjct: 135 LISLVNNFLKYGLNELKLCFRVRLTKYLYEEYLQAFTYYKMGNLDNRIANPDQLLTQDVE 194
Query: 216 RFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKL 275
+FC+ + +L + D +LY ++L S + ++AY++ +G + GK+
Sbjct: 195 KFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGAQGPASMMAYLVVSGLFLTRLRRPIGKM 254
Query: 276 MSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFG 335
EQ+ EGEYR ++SRL T++E IAFY G +E+ + F+ L H+ + + G
Sbjct: 255 TITEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTVHSVFRKLVEHLHNFILFRFSMG 314
Query: 336 MIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGT 395
I + KYL V +++ PF + P +++L + +++ + Q+LG
Sbjct: 315 FIDSIIAKYLATVVGYLVVSRPFLDLS-HPRHLKSTHSELLEDYYQSGRMLLRMSQALGR 373
Query: 396 LSISSRRLNRLSGYADRIHELMVISREL----------SIEDKS-------PQRNGSRNY 438
+ ++ R + RL+G+ RI ELM + ++L S ++K P G+
Sbjct: 374 IVLAGREMTRLAGFTARITELMQVLKDLNHGKYERTMVSQQEKGIEGVQVIPLIPGAGEI 433
Query: 439 FSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV 498
N I+F V + TP G+VL+ +L +V G+N+LI GPNG GKSSLFRVLG LWPL
Sbjct: 434 IIADNIIKFDHVPLATPNGDVLIRDLNFEVRSGANVLICGPNGCGKSSLFRVLGELWPLF 493
Query: 499 SGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPL-TSDQEVEPLTHGGMVELLKN 557
G + KP G ++FYVPQRPY +GTLRDQ+IYP DQ+ + ++ + E L N
Sbjct: 494 GGRLTKPERG-----KLFYVPQRPYMTLGTLRDQVIYPDGREDQKRKGISDLVLKEYLDN 548
Query: 558 VDLEYLLDRYPPEKEI-NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
V L ++L+R + +W D LS GE+QR+ MARLFYHKP+FAILDECTSAV+ D+E
Sbjct: 549 VQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEGY 608
Query: 617 FCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEW 653
+ R +G + T+SHR +L H+ L +DG G +
Sbjct: 609 IYSHCRKVGITLFTVSHRKSLWKHHEYYLHMDGRGNY 645
|
Probable transporter. The nucleotide-binding fold acts as an ATP-binding subunit with ATPase activity. Homo sapiens (taxid: 9606) |
| >sp|Q8T8P3|ABCD2_DICDI ABC transporter D family member 2 OS=Dictyostelium discoideum GN=abcD2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 317 bits (812), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 198/611 (32%), Positives = 314/611 (51%), Gaps = 93/611 (15%)
Query: 117 RTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFR 176
RT LS +A++ G + R+ + + L+ S ++++ KY T L+L+FR
Sbjct: 132 RTMLSVSIAEIAGKNAQNLVARKWKEMRNGVLKFALVSIPASFVNASLKYETDMLALRFR 191
Query: 177 KIVTKLIHTRYFENMAYYKISHVDG--RITHPEQRLASDVPRFCSELSELVQDDLTAVTD 234
K +++ +H Y E + +YK SH+ G RI + +QR+ SD+ +FC+ +S L D
Sbjct: 192 KRLSEYVHKEYLEGVNFYKASHLGGADRIDNADQRVTSDIEQFCNSMSSLYTTLFKPFLD 251
Query: 235 GLLYTWRLC---SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHS 291
+L+T +L + SP +F +Y + +G + + P FG+L +K+ +LEG YR +H
Sbjct: 252 LVLFTRKLVVVMGWGSPLLMF---SYFIVSGFLKKLIMPPFGRLTAKQSELEGNYRTVHQ 308
Query: 292 RLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAV 351
RL T+AE IAFY G KE I F + H V + G+ FL+KY + V
Sbjct: 309 RLITNAEEIAFYDGSRKERQIINLSFGDIYNHTGYVSYLKCLVGIFDGFLVKYCASIVGY 368
Query: 352 ILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYAD 411
++ P + G +S ++ + +T ++++L Q++G L + ++ ++GY
Sbjct: 369 GCMVLPIYTG--IRGSSGKDSTELTKDYIRNTQLMVALSQAIGQLVLLGNKVTLMAGYTS 426
Query: 412 RIHELMVISRELS-------------------------------------IED------- 427
R+ EL+ + + + +ED
Sbjct: 427 RVSELLEMIKSIKERGTSQFTIVHEDDVPNPLTNSPVNDKYDTSVDMSSWLEDWRKRSDQ 486
Query: 428 ----KSPQRN-----GSRNYFSEANYIE-----FSGVKVVTPTGNVLVENLTLKVEPGSN 473
K Q N G+ + ++E F V +V+P G +LVENL +V P N
Sbjct: 487 TRIVKRQQSNRSSASGATTVYGGGTFVEGDFIKFENVSIVSPEGKLLVENLDFQVMPNQN 546
Query: 474 LLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQL 533
++ITGPNGSGKSSLFR+LG LWPL G + KP ++I +VPQ+PY +GTLRDQ+
Sbjct: 547 VMITGPNGSGKSSLFRILGELWPLHCGTVIKP-----RKEDILFVPQKPYLVLGTLRDQI 601
Query: 534 IYPLTSDQEVEPLTHGGMVEL-LKNVDLEYLLDRYPPE----KEINWGD------ELSLG 582
IY P +H M +L + + DL++LL P ++ NW D LS G
Sbjct: 602 IY---------PHSHDDMKKLGVTDDDLQHLLATVDPNLTIIRQWNWDDTKDWFTALSGG 652
Query: 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHD 642
++QR+ MARLFYH+P++AILDECTSAV+ ++E + + +G + T+SHRP L A+HD
Sbjct: 653 QKQRIAMARLFYHRPQYAILDECTSAVSDEVEGKIYETCKKLGITLFTVSHRPQLRAYHD 712
Query: 643 VVLSLDGEGEW 653
VL +G G W
Sbjct: 713 YVLLFNGRGGW 723
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9UBJ2|ABCD2_HUMAN ATP-binding cassette sub-family D member 2 OS=Homo sapiens GN=ABCD2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 317 bits (811), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 183/578 (31%), Positives = 307/578 (53%), Gaps = 44/578 (7%)
Query: 114 VVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSL 173
++ RT LS +A + G + ++ ++ F + + +++ + ++S +Y+ L+L
Sbjct: 114 LISRTFLSIYVAGLDGKIVKSIVEKKPRTFIIKLIKWLMIAIPATFVNSAIRYLECKLAL 173
Query: 174 QFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVT 233
FR + + YF N YYK+ ++DGR+ +P+Q L D+ F ++ L + +
Sbjct: 174 AFRTRLVDHAYETYFTNQTYYKVINMDGRLANPDQSLTEDIMMFSQSVAHLYSNLTKPIL 233
Query: 234 DGLLYTWRLCSYAS--------PKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGE 285
D +L ++ L A+ P + ++ Y +++ SP FGKL+++E +G
Sbjct: 234 DVMLTSYTLIQTATSRGASPIGPTLLAGLVVY--ATAKVLKACSPKFGKLVAEEAHRKGY 291
Query: 286 YRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYL 345
R +HSR+ + E IAFY G E +Q+ +KAL M ++L W+ MI+ FL+KY+
Sbjct: 292 LRYVHSRIIANVEEIAFYRGHKVEMKQLQKSYKALADQMNLILSKRLWYIMIEQFLMKYV 351
Query: 346 GATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQS----LGTLSISSR 401
++ +I++ P D + M+S + +L S + + S +
Sbjct: 352 WSSSGLIMVAIPIITATGFADGEDGQKQVMVSERTEAFTTARNLLASGADAIERIMSSYK 411
Query: 402 RLNRLSGYADRIHELMVISRELS----------IEDKSPQRNGSRNYFSEANYIEFSG-- 449
+ L+GY R++ + + E+ E +S +NG++ ++ + G
Sbjct: 412 EVTELAGYTARVYNMFWVFDEVKRGIYKRTAVIQESESHSKNGAKVELPLSDTLAIKGKV 471
Query: 450 -----------VKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV 498
V ++TP G V+ L KVE G +LLITGPNG GKSSLFR+L GLWP+
Sbjct: 472 IDVDHGIICENVPIITPAGEVVASRLNFKVEEGMHLLITGPNGCGKSSLFRILSGLWPVY 531
Query: 499 SGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT-SDQEVEPLTHGGMVELLKN 557
G + KP + +FY+PQRPY ++G+LRDQ+IYP + D + T + +L N
Sbjct: 532 EGVLYKPP-----PQHMFYIPQRPYMSLGSLRDQVIYPDSVDDMHDKGYTDQDLERILHN 586
Query: 558 VDLEYLLDRYPP-EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
V L +++ R + ++W D LS GE+QR+GMAR+FYHKPK+A+LDECTSAV+ D+E +
Sbjct: 587 VHLYHIVQREGGWDAVMDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGK 646
Query: 617 FCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWR 654
+ G S ++I+HRP+L +H +L DGEG WR
Sbjct: 647 IFQAAKGAGISLLSITHRPSLWKYHTHLLQFDGEGGWR 684
|
Probable transporter. Homo sapiens (taxid: 9606) |
| >sp|P33897|ABCD1_HUMAN ATP-binding cassette sub-family D member 1 OS=Homo sapiens GN=ABCD1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 315 bits (807), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 196/597 (32%), Positives = 325/597 (54%), Gaps = 58/597 (9%)
Query: 107 LLAL-VGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFF--QLISENILLCFLLSTMHST 163
LLAL +V RT LS +A++ G L R +R+ P F QL+ + +L+ + ++S
Sbjct: 93 LLALHSAALVSRTFLSVYVARLDGRLARC-IVRKDPRAFGWQLL-QWLLIALPATFVNSA 150
Query: 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSE 223
+Y+ G L+L FR + + YF YY++S++DGR+ +P+Q L DV F + ++
Sbjct: 151 IRYLEGQLALSFRSRLVAHAYRLYFSQQTYYRVSNMDGRLRNPDQSLTEDVVAFAASVAH 210
Query: 224 LVQDDLTAVTDGLLYTWRL--------CSYASPKYVFWILAYVLGAGTMMRNFSPAFGKL 275
L + + D + ++ L A P + ++ ++ ++R FSP FG+L
Sbjct: 211 LYSNLTKPLLDVAVTSYTLLRAARSRGAGTAWPSAIAGLVVFL--TANVLRAFSPKFGEL 268
Query: 276 MSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFG 335
+++E + +GE R +HSR+ ++E IAFYGG E + +Q+ ++ L + ++L + W+
Sbjct: 269 VAEEARRKGELRYMHSRVVANSEEIAFYGGHEVELALLQRSYQDLASQINLILLERLWYV 328
Query: 336 MIQDFLLKYLGATVAVILIIEPFF--AGNLKPDTSTLGRA---KMLSNLRYHTSVIISLF 390
M++ FL+KY+ + ++++ P G + D + +A K L + ++
Sbjct: 329 MLEQFLMKYVWSASGLLMVAVPIITATGYSESDAEAVKKAALEKKEEELVSERTEAFTIA 388
Query: 391 QSLGTLSI--------SSRRLNRLSGYADRIHELMVI---------SRELSIEDKSP--- 430
++L T + S + + L+GY R+HE+ + R +ED
Sbjct: 389 RNLLTAAADAIERIMSSYKEVTELAGYTARVHEMFQVFEDVQRCHFKRPRELEDAQAGSG 448
Query: 431 --QRNGSR---------NYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGP 479
R+G R I + +VTP+G V+V +L ++VE G +LLITGP
Sbjct: 449 TIGRSGVRVEGPLKIRGQVVDVEQGIICENIPIVTPSGEVVVASLNIRVEEGMHLLITGP 508
Query: 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT- 538
NG GKSSLFR+LGGLWP G + KP + +FY+PQRPY +VG+LRDQ+IYP +
Sbjct: 509 NGCGKSSLFRILGGLWPTYGGVLYKPP-----PQRMFYIPQRPYMSVGSLRDQVIYPDSV 563
Query: 539 SDQEVEPLTHGGMVELLKNVDLEYLLDRYPP-EKEINWGDELSLGEQQRLGMARLFYHKP 597
D + + + + +L V L ++L R E +W D LS GE+QR+GMAR+FYH+P
Sbjct: 564 EDMQRKGYSEQDLEAILDVVHLHHILQREGGWEAMCDWKDVLSGGEKQRIGMARMFYHRP 623
Query: 598 KFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWR 654
K+A+LDECTSAV+ D+E + + G + ++I+HRP+L +H +L DGEG W+
Sbjct: 624 KYALLDECTSAVSIDVEGKIFQAAKDAGIALLSITHRPSLWKYHTHLLQFDGEGGWK 680
|
Probable transporter. The nucleotide-binding fold acts as an ATP-binding subunit with ATPase activity. Homo sapiens (taxid: 9606) |
| >sp|P48410|ABCD1_MOUSE ATP-binding cassette sub-family D member 1 OS=Mus musculus GN=Abcd1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 313 bits (803), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 199/654 (30%), Positives = 347/654 (53%), Gaps = 65/654 (9%)
Query: 59 GDSERKPDKAVANRSNIKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLAL-VGIVVLR 117
G+ ++ A A ++ + + ++ + +L E G LLAL +V R
Sbjct: 51 GEPTQEASGATATKAGMNRVFLQRLLALLRLLFPRVLCRETG------LLALHSAALVSR 104
Query: 118 TALSNRLAKVQGFLFRAAFLRRVPLFF--QLISENILLCFLLSTMHSTSKYITGTLSLQF 175
T LS +A++ G L R +R+ P F QL+ + +L+ + ++S +Y+ G L+L F
Sbjct: 105 TFLSVYVARLDGRLARC-IVRKDPRAFSWQLL-QWLLIALPATFINSAIRYLEGQLALSF 162
Query: 176 RKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDG 235
R + + YF YY++S++DGR+ +P+Q L DV F + ++ L + + D
Sbjct: 163 RSRLVAHAYGLYFSQQTYYRVSNMDGRLRNPDQSLTEDVVAFAASVAHLYSNLTKPLLDV 222
Query: 236 LLYTWRL--------CSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYR 287
+ ++ L A P + ++ ++ ++R FSP FG+L+++E + +GE R
Sbjct: 223 AVTSYTLLRAARSRGAGTAWPSAIAGLVVFL--TANVLRAFSPKFGELVAEEARRKGELR 280
Query: 288 QLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGA 347
+HSR+ ++E IAFYGG E + +Q ++ L + ++L + W+ M++ FL+KY+ +
Sbjct: 281 YMHSRVVANSEEIAFYGGHEVELALLQHSYQDLASQINLILLERLWYVMLEQFLMKYVWS 340
Query: 348 TVAVILIIEPFF--AGNLKPDTSTLGRAKM---LSNLRYHTSVIISLFQSLGTLSI---- 398
++++ P G + D+ + +A + L + ++ ++L T +
Sbjct: 341 ASGLLMVAVPIITATGYAESDSEAMKKAALEMKEEELVSERTEAFTIARNLLTAAADATE 400
Query: 399 ----SSRRLNRLSGYADRIHELMVISRELS------IEDKSPQRNGSRNYFSEANYIE-- 446
S + + L+GY R++E+ + ++ D + G ++E
Sbjct: 401 RIMSSYKEVTELAGYTARVYEMFQVFEDVKHCRFKRTGDLEEAQAGPGVMVQSGVHVEGP 460
Query: 447 ---------------FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVL 491
+ ++TPTG V+V +L ++VE G +LLITGPNG GKSSLFR+L
Sbjct: 461 LKIQGQVVDVEQGIICENIPIITPTGEVVVASLNIRVEEGMHLLITGPNGCGKSSLFRIL 520
Query: 492 GGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS-DQEVEPLTHGG 550
GGLWP SG + KP + +FY+PQRPY +VG+LRDQ+IYP ++ D + +
Sbjct: 521 GGLWPTYSGVLYKPP-----PQRMFYIPQRPYMSVGSLRDQVIYPDSAEDMRRKGCSEQQ 575
Query: 551 MVELLKNVDLEYLLDRYPP-EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
+ +L V L ++L R E +W D LS GE+QR+GMAR+FYH+PK+A+LDECTSAV
Sbjct: 576 LEAILGIVHLRHILQREGGWEAVCDWKDVLSGGEKQRIGMARMFYHRPKYALLDECTSAV 635
Query: 610 TTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSS 663
+ D+E + + G + ++I+HRP+L +H +L DGEG W+ +K D ++
Sbjct: 636 SIDVEGKIFQAAKDAGIALLSITHRPSLWKYHTHLLQFDGEGGWKF-EKLDSAA 688
|
Probable transporter. Could be involved in the import of VLCFA-CoA synthetase into the peroxisomal membrane. Mus musculus (taxid: 10090) |
| >sp|Q61285|ABCD2_MOUSE ATP-binding cassette sub-family D member 2 OS=Mus musculus GN=Abcd2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 308 bits (789), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 182/582 (31%), Positives = 312/582 (53%), Gaps = 51/582 (8%)
Query: 114 VVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSL 173
++ RT LS +A + G + ++ ++ F + + +++ + ++S +Y+ L+L
Sbjct: 114 LISRTFLSIYVAGLDGKIVKSIVEKKPRTFIIKLIKWLMIAIPATFVNSAIRYLECKLAL 173
Query: 174 QFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVT 233
FR + + YF N YYK+ ++DGR+ +P+Q L D+ F ++ L + +
Sbjct: 174 AFRTRLVDHAYETYFANQTYYKVINMDGRLANPDQSLTEDIMMFSQSVAHLYSNLTKPIL 233
Query: 234 DGLLYTWRLCSYAS--------PKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGE 285
D +L ++ L A+ P + ++ Y +++ SP FG L+++E +G
Sbjct: 234 DVILTSYTLIRTATSRGASPIGPTLLAGLVVY--ATAKVLKACSPKFGSLVAEEAHRKGY 291
Query: 286 YRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYL 345
R +HSR+ + E IAFY G E +Q+ +KAL M ++L W+ MI+ FL+KY+
Sbjct: 292 LRYVHSRIIANVEEIAFYRGHKVEMKQLQKCYKALAYQMNLILSKRLWYIMIEQFLMKYV 351
Query: 346 GATVAVILIIEP------FFAGNLK--PDTSTLG-RAKMLSNLRYHTSVIISLFQSLGTL 396
++ +I++ P F G+L+ P + + R + + R +++ S ++ +
Sbjct: 352 WSSCGLIMVAIPIITATGFADGDLEDGPKQAMVSDRTEAFTTAR---NLLASGADAIERI 408
Query: 397 SISSRRLNRLSGYADRIHELM---------VISRELSIEDKSPQRNGSRNYFSEANYIEF 447
S + + L+GY R++ + + R ++ E ++ + G ++ +
Sbjct: 409 MSSYKEITELAGYTARVYNMFWVFDEVKRGIYKRTVTQEPENHSKRGGNLELPLSDTLAI 468
Query: 448 SG-------------VKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL 494
G V ++TP G V+ L KVE G +LLITGPNG GKSSLFR+L GL
Sbjct: 469 KGTVIDVDHGIICENVPIITPAGEVVASRLNFKVEEGMHLLITGPNGCGKSSLFRILSGL 528
Query: 495 WPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP-LTHGGMVE 553
WP+ G + KP + +FY+PQRPY ++G+LRDQ+IYP ++D E T +
Sbjct: 529 WPVYEGVLYKPP-----PQHMFYIPQRPYMSLGSLRDQVIYPDSADDMREKGYTDQDLER 583
Query: 554 LLKNVDLEYLLDRYPP-EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612
+L +V L +++ R + ++W D LS GE+QR+GMAR+FYHKPK+A+LDECTSAV+ D
Sbjct: 584 ILHSVHLYHIVQREGGWDAVMDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSID 643
Query: 613 MEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWR 654
+E + G S ++I+HRP+L +H +L DGEG WR
Sbjct: 644 VEGKIFQAAIGAGISLLSITHRPSLWKYHTHLLQFDGEGGWR 685
|
Probable transporter. Mus musculus (taxid: 10090) |
| >sp|Q9QY44|ABCD2_RAT ATP-binding cassette sub-family D member 2 OS=Rattus norvegicus GN=Abcd2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 305 bits (781), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 182/582 (31%), Positives = 312/582 (53%), Gaps = 51/582 (8%)
Query: 114 VVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSL 173
++ RT LS +A + G + ++ ++ F + + +++ + ++S +Y+ L+L
Sbjct: 114 LISRTFLSIYVAGLDGKIVKSIVEKKPRTFIIKLVKWLMIAVPATFVNSAIRYLECKLAL 173
Query: 174 QFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVT 233
FR + + YF N YYK+ ++DGR+ +P+Q L D+ F ++ L + +
Sbjct: 174 AFRTRLVDHAYETYFANQTYYKVINMDGRLANPDQSLTEDIMMFSQSVAHLYSNLTKPIL 233
Query: 234 DGLLYTWRLCSYAS--------PKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGE 285
D +L ++ L A+ P + ++ Y +++ SP FG L+++E +G
Sbjct: 234 DVILTSYTLIRTATSRGASPIGPTLLAGLVVY--ATAKVLKACSPKFGTLVAEEAHRKGY 291
Query: 286 YRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYL 345
R +HSR+ + E IAFY G E +Q+ +KAL M ++L W+ MI+ FL+KY+
Sbjct: 292 LRYVHSRIIANVEEIAFYRGHKVEMKQLQKCYKALAYQMNLILSKRLWYIMIEQFLMKYV 351
Query: 346 GATVAVILIIEP------FFAGNLK--PDTSTLG-RAKMLSNLRYHTSVIISLFQSLGTL 396
+ +I++ P F G+L+ P + + R + + R +++ S ++ +
Sbjct: 352 WSGCGLIMVAIPIITATGFADGDLEDGPKQAMVSDRTEAFTTAR---NLLASGADAIERI 408
Query: 397 SISSRRLNRLSGYADRIHELM---------VISRELSIEDKSPQRNGSRNYFSEANYIEF 447
S + + L+GY R++ + + R ++ E ++ ++G ++ +
Sbjct: 409 MSSYKEITELAGYTARVYNMFWVFDEVKRGIYKRTVTQEPENNSKSGGGLELPLSDTLAI 468
Query: 448 SG-------------VKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL 494
G V ++TP G V+ +L KVE G +LLITGPNG GKSSLFR+L GL
Sbjct: 469 KGTVIDVDHGILCENVPIITPAGEVVASSLNFKVEEGMHLLITGPNGCGKSSLFRILSGL 528
Query: 495 WPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP-LTHGGMVE 553
WP+ G + KP + +FY+PQRPY ++G+LRDQ+IYP + D E T +
Sbjct: 529 WPVYEGVLYKPP-----PQHMFYIPQRPYMSLGSLRDQVIYPDSVDDMHEKGYTDRDLEH 583
Query: 554 LLKNVDLEYLLDRYPP-EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612
+L +V L +++ R + ++W D LS GE+QR+GMAR+FYHKPK+A+LDECTSAV+ D
Sbjct: 584 ILHSVHLYHIVQREGGWDAVMDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSID 643
Query: 613 MEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWR 654
+E + G S ++I+HRP+L +H +L DGEG WR
Sbjct: 644 VEGKIFQAAIGAGISLLSITHRPSLWKYHTHLLQFDGEGGWR 685
|
Probable transporter. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1064 | ||||||
| 224083701 | 1309 | peroxisomal membrane ABC transporter fam | 0.956 | 0.777 | 0.827 | 0.0 | |
| 356540293 | 1339 | PREDICTED: ABC transporter D family memb | 0.959 | 0.762 | 0.824 | 0.0 | |
| 356540295 | 1354 | PREDICTED: ABC transporter D family memb | 0.959 | 0.754 | 0.813 | 0.0 | |
| 356528475 | 1342 | PREDICTED: ABC transporter D family memb | 0.964 | 0.764 | 0.818 | 0.0 | |
| 357463371 | 1349 | ABC transporter D family member [Medicag | 0.963 | 0.759 | 0.818 | 0.0 | |
| 357463369 | 1356 | ABC transporter D family member [Medicag | 0.963 | 0.755 | 0.813 | 0.0 | |
| 356512707 | 1319 | PREDICTED: ABC transporter D family memb | 0.951 | 0.767 | 0.812 | 0.0 | |
| 18420546 | 1337 | ABC transporter D family member 1 [Arabi | 0.965 | 0.768 | 0.806 | 0.0 | |
| 18478510 | 1337 | peroxisomal ABC transporter [Arabidopsis | 0.965 | 0.768 | 0.806 | 0.0 | |
| 334187339 | 1338 | ABC transporter D family member 1 [Arabi | 0.965 | 0.767 | 0.805 | 0.0 |
| >gi|224083701|ref|XP_002307090.1| peroxisomal membrane ABC transporter family, PMP family [Populus trichocarpa] gi|222856539|gb|EEE94086.1| peroxisomal membrane ABC transporter family, PMP family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1765 bits (4571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 851/1029 (82%), Positives = 936/1029 (90%), Gaps = 11/1029 (1%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
MPSLQ L LTEHGRGIL+SRRK++L A+GIL AGGTA Y++SR SKK D+F +YNG+ D
Sbjct: 1 MPSLQLLQLTEHGRGILASRRKSLLFAAGILAAGGTAVYVQSRIRSKKSDSFLYYNGIKD 60
Query: 61 SERKPDKAVANRSNIKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTAL 120
++ DK V N KK QKKGGLK+LQ+LA++LLS MGK GA+DLLA++ I VL+T L
Sbjct: 61 DKKISDKLVTNG---KKTVQKKGGLKALQILASVLLSHMGKTGAKDLLAMIAIAVLKTTL 117
Query: 121 SNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVT 180
SNRLAKVQGFLFRAAFL+RVPLFF+LISENILLCFLLST++STSKY+TGTLSL FRKI+T
Sbjct: 118 SNRLAKVQGFLFRAAFLQRVPLFFRLISENILLCFLLSTINSTSKYVTGTLSLCFRKILT 177
Query: 181 KLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240
K+IH YFENMAYYKISHVDGRIT+PEQR+ASDVPRFCSELSELV DDLTAVTDGLLYTW
Sbjct: 178 KVIHAHYFENMAYYKISHVDGRITNPEQRIASDVPRFCSELSELVLDDLTAVTDGLLYTW 237
Query: 241 RLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESI 300
RLCSYASPKY+FW++AYVLGAGT++RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESI
Sbjct: 238 RLCSYASPKYLFWMVAYVLGAGTLIRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESI 297
Query: 301 AFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFA 360
AFYGGEN+EE HIQQKFK L HMR VLHDHWWFGMIQDFLLKY GATVAVILIIEPFFA
Sbjct: 298 AFYGGENREEFHIQQKFKTLIGHMRTVLHDHWWFGMIQDFLLKYFGATVAVILIIEPFFA 357
Query: 361 GNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVIS 420
G L+PD STLGRA+MLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHEL+ +S
Sbjct: 358 GQLRPDASTLGRAEMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELIAVS 417
Query: 421 RELSIEDKSP-QRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGP 479
RELS DKS QR+GSRNYFSEANY+EF GVKVVTP+GNVLV++LTLKV+ GSNLLITGP
Sbjct: 418 RELSNGDKSSLQRSGSRNYFSEANYVEFFGVKVVTPSGNVLVQDLTLKVDSGSNLLITGP 477
Query: 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS 539
NGSGKSSLFRVLGGLWPLVSGHI KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT+
Sbjct: 478 NGSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTA 537
Query: 540 DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599
DQE+EPLTH GMVELLKNVDLEYLLDRYPPEKE+NWG+ELSLGEQQRLGMARLFYHKPKF
Sbjct: 538 DQEIEPLTHSGMVELLKNVDLEYLLDRYPPEKEVNWGEELSLGEQQRLGMARLFYHKPKF 597
Query: 600 AILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKR 659
AILDECTSAVTTDMEERFCA+V+AMGTSCITISHRPALVAFHDVVLSLDGEG W V+ K
Sbjct: 598 AILDECTSAVTTDMEERFCAQVQAMGTSCITISHRPALVAFHDVVLSLDGEGGWLVNYKG 657
Query: 660 DGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIA 719
S +T++G ++ ET+R++DAM V++AF T+ K + SY+SEVIAASP
Sbjct: 658 KDSPALTEAGGDLTGDFETERKNDAMIVQKAFSTSDKAT-------HSYISEVIAASPNI 710
Query: 720 DHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIA 779
DHNV LP+ P L+ APR LPLRVA MFK+LVPT+ DKQGA LLAVAFLV+SRT++SDRIA
Sbjct: 711 DHNVLLPIVPPLQRAPRALPLRVAAMFKILVPTILDKQGAHLLAVAFLVISRTFVSDRIA 770
Query: 780 SLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLK 839
SLNGTTVK+VLEQDKASFVRLIGVSVLQSAASSFIAPS+RHLT RLALGWRIR+TQHLLK
Sbjct: 771 SLNGTTVKFVLEQDKASFVRLIGVSVLQSAASSFIAPSLRHLTTRLALGWRIRLTQHLLK 830
Query: 840 SYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKAL 899
+YLR N+FYKVF+MSSK+IDADQRITHDLEKLTTDLSGLVTGMVKP VDILWFTWRMK L
Sbjct: 831 NYLRNNTFYKVFHMSSKNIDADQRITHDLEKLTTDLSGLVTGMVKPLVDILWFTWRMKLL 890
Query: 900 TGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGG 959
TGQRGVAILY YMLLGLGFLR+VTP+FGDL S EQQLEGTFRFMHERLR HAESVAFFGG
Sbjct: 891 TGQRGVAILYTYMLLGLGFLRAVTPDFGDLASEEQQLEGTFRFMHERLRTHAESVAFFGG 950
Query: 960 GAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDR 1019
G REKAMIESRFRELL+HS+LLLKKKW +GILDDFVTKQLPHNVTWGLSLLYAMEHKGDR
Sbjct: 951 GKREKAMIESRFRELLDHSMLLLKKKWSYGILDDFVTKQLPHNVTWGLSLLYAMEHKGDR 1010
Query: 1020 ALVSTQGEI 1028
A+ STQGE+
Sbjct: 1011 AMTSTQGEL 1019
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540293|ref|XP_003538624.1| PREDICTED: ABC transporter D family member 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1736 bits (4497), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 853/1034 (82%), Positives = 927/1034 (89%), Gaps = 13/1034 (1%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
M SLQ L LT G+ L+SRR+T+LLASGIL+AGGTAAY++SRF K D FGH NG +
Sbjct: 1 MSSLQLLQLTRRGQSFLASRRRTLLLASGILIAGGTAAYVQSRFRVNKHDLFGHCNGHNN 60
Query: 61 SERKPDKAVANRSNIKKAN----QKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVL 116
DK V +K + ++K GLKSLQVLAAILLS MGK GARDLL LV I VL
Sbjct: 61 -----DKEVTEEEVVKGVSAPKKKQKKGLKSLQVLAAILLSGMGKFGARDLLGLVVIAVL 115
Query: 117 RTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFR 176
RTALSNRLAKVQGFLFRAAFLRRVPLF +LISENILLCFLLST+HSTSKYITGTLSL FR
Sbjct: 116 RTALSNRLAKVQGFLFRAAFLRRVPLFLRLISENILLCFLLSTIHSTSKYITGTLSLHFR 175
Query: 177 KIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGL 236
KI+TKLIH+ YFENM YYKISHVDGRIT+PEQR+ASDVPRFCSELSE+VQDDLTAVTDGL
Sbjct: 176 KILTKLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVTDGL 235
Query: 237 LYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTH 296
LYTWRLCSYASPKYV WIL YVLGAG +RNFSP+FGKLMSKEQQLEGEYRQLH+RLRTH
Sbjct: 236 LYTWRLCSYASPKYVVWILVYVLGAGAAIRNFSPSFGKLMSKEQQLEGEYRQLHARLRTH 295
Query: 297 AESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIE 356
+ESIAFYGGE KEE+HIQQKFK L RHM VLHDHWWFGMIQD LLKYLGATVAVILIIE
Sbjct: 296 SESIAFYGGERKEETHIQQKFKTLVRHMYSVLHDHWWFGMIQDLLLKYLGATVAVILIIE 355
Query: 357 PFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHEL 416
PFF+G+L+PD+STLGRA MLSNLRYHTSVIISLFQSLGTLSIS+RRLNRLSGYADRI+EL
Sbjct: 356 PFFSGHLRPDSSTLGRADMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIYEL 415
Query: 417 MVISRELSI--EDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNL 474
M +SRELS+ E S QRN SRN EANYIEF GVKVVTPTGNVLV++LTL+VE GSNL
Sbjct: 416 MAVSRELSLVNEKSSLQRNASRNCIREANYIEFDGVKVVTPTGNVLVDDLTLRVESGSNL 475
Query: 475 LITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLI 534
LITGPNGSGKSSLFRVLGGLWPL+SGHI KPG+GSDLN EIFYVPQRPYTAVGTLRDQLI
Sbjct: 476 LITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNNEIFYVPQRPYTAVGTLRDQLI 535
Query: 535 YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594
YPLT DQE+EPLT GMVELLKNVDLEYLLDRYPPE+E+NWGDELSLGEQQRLGMARLFY
Sbjct: 536 YPLTEDQEIEPLTDRGMVELLKNVDLEYLLDRYPPEREVNWGDELSLGEQQRLGMARLFY 595
Query: 595 HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWR 654
HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W
Sbjct: 596 HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWS 655
Query: 655 VHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIA 714
VH KR+GSS T+ GI+ +K+SET RQSDA AV++AF +KKDSAFSNPKAQSY +EVI+
Sbjct: 656 VHYKREGSS--TEVGIDTMKASETKRQSDAKAVQRAFSMSKKDSAFSNPKAQSYFAEVIS 713
Query: 715 ASPIADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWI 774
+SP +H +P V PQL R+LPLRVA M KVLVPTV DKQGAQLLAVAFLVVSRTW+
Sbjct: 714 SSPSMNHTIPPSVVPQLHCNTRVLPLRVAAMCKVLVPTVLDKQGAQLLAVAFLVVSRTWV 773
Query: 775 SDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMT 834
SDRIASLNGTTVK+VLEQDKASF+RLIG+SVLQS ASSFIAPSIRHLTARLALGWR+R+T
Sbjct: 774 SDRIASLNGTTVKFVLEQDKASFIRLIGLSVLQSVASSFIAPSIRHLTARLALGWRVRLT 833
Query: 835 QHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTW 894
QHLLK+YLR N+FYKVF+M++K+IDADQRITHDLEKLT DLSGLVTGMVKPSVDILWFTW
Sbjct: 834 QHLLKNYLRNNAFYKVFHMANKNIDADQRITHDLEKLTADLSGLVTGMVKPSVDILWFTW 893
Query: 895 RMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESV 954
RMK LTGQRGVAILYAYMLLGLGFLR+VTP+FG+L S+EQQLEGTFRFMHERL HAESV
Sbjct: 894 RMKLLTGQRGVAILYAYMLLGLGFLRTVTPDFGNLISQEQQLEGTFRFMHERLCTHAESV 953
Query: 955 AFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME 1014
AFFGGGAREKAM+ESRFRELL HS LLKKKWLFGILDDF+TKQLPHNVTW LSLLYAME
Sbjct: 954 AFFGGGAREKAMVESRFRELLSHSKYLLKKKWLFGILDDFITKQLPHNVTWLLSLLYAME 1013
Query: 1015 HKGDRALVSTQGEI 1028
HKGDRA +STQGE+
Sbjct: 1014 HKGDRASISTQGEL 1027
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540295|ref|XP_003538625.1| PREDICTED: ABC transporter D family member 1-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1727 bits (4474), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 853/1049 (81%), Positives = 927/1049 (88%), Gaps = 28/1049 (2%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
M SLQ L LT G+ L+SRR+T+LLASGIL+AGGTAAY++SRF K D FGH NG +
Sbjct: 1 MSSLQLLQLTRRGQSFLASRRRTLLLASGILIAGGTAAYVQSRFRVNKHDLFGHCNGHNN 60
Query: 61 SERKPDKAVANRSNIKKAN----QKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVL 116
DK V +K + ++K GLKSLQVLAAILLS MGK GARDLL LV I VL
Sbjct: 61 -----DKEVTEEEVVKGVSAPKKKQKKGLKSLQVLAAILLSGMGKFGARDLLGLVVIAVL 115
Query: 117 RTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFR 176
RTALSNRLAKVQGFLFRAAFLRRVPLF +LISENILLCFLLST+HSTSKYITGTLSL FR
Sbjct: 116 RTALSNRLAKVQGFLFRAAFLRRVPLFLRLISENILLCFLLSTIHSTSKYITGTLSLHFR 175
Query: 177 KIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGL 236
KI+TKLIH+ YFENM YYKISHVDGRIT+PEQR+ASDVPRFCSELSE+VQDDLTAVTDGL
Sbjct: 176 KILTKLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVTDGL 235
Query: 237 LYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTH 296
LYTWRLCSYASPKYV WIL YVLGAG +RNFSP+FGKLMSKEQQLEGEYRQLH+RLRTH
Sbjct: 236 LYTWRLCSYASPKYVVWILVYVLGAGAAIRNFSPSFGKLMSKEQQLEGEYRQLHARLRTH 295
Query: 297 AESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIE 356
+ESIAFYGGE KEE+HIQQKFK L RHM VLHDHWWFGMIQD LLKYLGATVAVILIIE
Sbjct: 296 SESIAFYGGERKEETHIQQKFKTLVRHMYSVLHDHWWFGMIQDLLLKYLGATVAVILIIE 355
Query: 357 PFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHEL 416
PFF+G+L+PD+STLGRA MLSNLRYHTSVIISLFQSLGTLSIS+RRLNRLSGYADRI+EL
Sbjct: 356 PFFSGHLRPDSSTLGRADMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIYEL 415
Query: 417 MVISRELSI--EDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNL 474
M +SRELS+ E S QRN SRN EANYIEF GVKVVTPTGNVLV++LTL+VE GSNL
Sbjct: 416 MAVSRELSLVNEKSSLQRNASRNCIREANYIEFDGVKVVTPTGNVLVDDLTLRVESGSNL 475
Query: 475 LITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLI 534
LITGPNGSGKSSLFRVLGGLWPL+SGHI KPG+GSDLN EIFYVPQRPYTAVGTLRDQLI
Sbjct: 476 LITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNNEIFYVPQRPYTAVGTLRDQLI 535
Query: 535 YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594
YPLT DQE+EPLT GMVELLKNVDLEYLLDRYPPE+E+NWGDELSLGEQQRLGMARLFY
Sbjct: 536 YPLTEDQEIEPLTDRGMVELLKNVDLEYLLDRYPPEREVNWGDELSLGEQQRLGMARLFY 595
Query: 595 HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWR 654
HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W
Sbjct: 596 HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWS 655
Query: 655 VHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIA 714
VH KR+GSS T+ GI+ +K+SET RQSDA AV++AF +KKDSAFSNPKAQSY +EVI+
Sbjct: 656 VHYKREGSS--TEVGIDTMKASETKRQSDAKAVQRAFSMSKKDSAFSNPKAQSYFAEVIS 713
Query: 715 ASPIADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWI 774
+SP +H +P V PQL R+LPLRVA M KVLVPTV DKQGAQLLAVAFLVVSRTW+
Sbjct: 714 SSPSMNHTIPPSVVPQLHCNTRVLPLRVAAMCKVLVPTVLDKQGAQLLAVAFLVVSRTWV 773
Query: 775 SDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMT 834
SDRIASLNGTTVK+VLEQDKASF+RLIG+SVLQS ASSFIAPSIRHLTARLALGWR+R+T
Sbjct: 774 SDRIASLNGTTVKFVLEQDKASFIRLIGLSVLQSVASSFIAPSIRHLTARLALGWRVRLT 833
Query: 835 QHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTW 894
QHLLK+YLR N+FYKVF+M++K+IDADQRITHDLEKLT DLSGLVTGMVKPSVDILWFTW
Sbjct: 834 QHLLKNYLRNNAFYKVFHMANKNIDADQRITHDLEKLTADLSGLVTGMVKPSVDILWFTW 893
Query: 895 RMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESV 954
RMK LTGQRGVAILYAYMLLGLGFLR+VTP+FG+L S+EQQLEGTFRFMHERL HAESV
Sbjct: 894 RMKLLTGQRGVAILYAYMLLGLGFLRTVTPDFGNLISQEQQLEGTFRFMHERLCTHAESV 953
Query: 955 AFFGGGAREKA---------------MIESRFRELLEHSLLLLKKKWLFGILDDFVTKQL 999
AFFGGGAREKA M+ESRFRELL HS LLKKKWLFGILDDF+TKQL
Sbjct: 954 AFFGGGAREKAVSFCMSLFYYLNFLQMVESRFRELLSHSKYLLKKKWLFGILDDFITKQL 1013
Query: 1000 PHNVTWGLSLLYAMEHKGDRALVSTQGEI 1028
PHNVTW LSLLYAMEHKGDRA +STQGE+
Sbjct: 1014 PHNVTWLLSLLYAMEHKGDRASISTQGEL 1042
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528475|ref|XP_003532828.1| PREDICTED: ABC transporter D family member 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1725 bits (4467), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 844/1031 (81%), Positives = 919/1031 (89%), Gaps = 5/1031 (0%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
M SLQ LT+HGR L+SRRKT+LLA+GILVAGGT AY++SRF + D G +
Sbjct: 1 MSSLQLFQLTQHGRSFLASRRKTLLLATGILVAGGTTAYVQSRFRVNRDDLLGDSYECNN 60
Query: 61 SERKPDKAVANRSNIKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTAL 120
+ + V ++ K QKKGGLKSLQVLAAILLSEMG++GA++LLALV IVVLRT L
Sbjct: 61 DKELTKEEVMKGTSAPKNKQKKGGLKSLQVLAAILLSEMGQLGAKNLLALVSIVVLRTTL 120
Query: 121 SNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVT 180
SNRLAKVQGFLFRAAFLRRVPLF +LISENILLCFLLSTM STSKYITGTLSL FRKI+T
Sbjct: 121 SNRLAKVQGFLFRAAFLRRVPLFLRLISENILLCFLLSTMQSTSKYITGTLSLHFRKILT 180
Query: 181 KLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240
KLIH+RYFENM YYKISHVDGRIT+PEQR+ASDVPRFCSELSE+VQDDLTAVTDGLLYTW
Sbjct: 181 KLIHSRYFENMVYYKISHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVTDGLLYTW 240
Query: 241 RLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESI 300
RLCSYASPKY+FWILAYVLGAG +RNFSPAFGKLMS+EQ+LEG YRQLHSRLRTH+ESI
Sbjct: 241 RLCSYASPKYIFWILAYVLGAGAAIRNFSPAFGKLMSREQELEGGYRQLHSRLRTHSESI 300
Query: 301 AFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFA 360
AFYGGE +EE+HIQQKF+ L RH+ VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF+
Sbjct: 301 AFYGGEKREEAHIQQKFRTLVRHINRVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFS 360
Query: 361 GNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVIS 420
G+L+PD+STLGRA+MLSNLRYHTSVIISLFQSLGTLSIS+RRLNRLSGYADRIHELM IS
Sbjct: 361 GHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIHELMAIS 420
Query: 421 RELSIED--KSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITG 478
RELS+E+ S QR GSRN SEANY+ F GVKVVTPTGNVLV +LTLKVE GSNLLITG
Sbjct: 421 RELSLENGKSSLQRQGSRNCISEANYVGFYGVKVVTPTGNVLVNDLTLKVESGSNLLITG 480
Query: 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 538
PNGSGKSSLFRVLGGLWPLVSGHI KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT
Sbjct: 481 PNGSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 540
Query: 539 SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598
DQEVEPLT MVELLKNVDLEYLLDRYPPEKE+NWGDELSLGEQQRLGMARLFYHKPK
Sbjct: 541 VDQEVEPLTDSRMVELLKNVDLEYLLDRYPPEKEVNWGDELSLGEQQRLGMARLFYHKPK 600
Query: 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDK 658
FAILDECTSAVTTDMEERFCA V AMGTSCITISHRPALVAFHDVVLSLDGEG W VH +
Sbjct: 601 FAILDECTSAVTTDMEERFCANVLAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHHR 660
Query: 659 RDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEV-IAASP 717
R+ SS T+ G +M+K+SET RQSDA AV++AF KKDSAF N KAQS +SEV IA+SP
Sbjct: 661 REDSS--TELGNDMMKASETKRQSDAKAVQRAFAMNKKDSAFLNSKAQSDISEVIIASSP 718
Query: 718 IADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDR 777
N+ PQL R LP+RVA M KVLVPT+FDKQGA+LLAV FLVVSRTW+SDR
Sbjct: 719 SMKRNISPSAVPQLHGNTRALPMRVAAMCKVLVPTIFDKQGARLLAVVFLVVSRTWVSDR 778
Query: 778 IASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHL 837
IASLNGTTVK VLEQDKASF+RLIG+SVLQSAASSFIAPSIRHLTARLALG R +TQHL
Sbjct: 779 IASLNGTTVKLVLEQDKASFIRLIGLSVLQSAASSFIAPSIRHLTARLALGGRTHLTQHL 838
Query: 838 LKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 897
LK+YLR N+FYKVF+M+SK+IDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK
Sbjct: 839 LKNYLRNNAFYKVFHMASKNIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 898
Query: 898 ALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFF 957
LTG+RGVAILYAYMLLGLGFLR+VTP+FG+L S+EQQLEGTFRFMHERL HAESVAFF
Sbjct: 899 MLTGRRGVAILYAYMLLGLGFLRTVTPDFGNLISQEQQLEGTFRFMHERLCTHAESVAFF 958
Query: 958 GGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKG 1017
GGGAREKAM+ESRFRELL HS LLKKKWLFGILDDF+TKQLPHNVTWGLSL+YAMEHKG
Sbjct: 959 GGGAREKAMVESRFRELLTHSEYLLKKKWLFGILDDFITKQLPHNVTWGLSLIYAMEHKG 1018
Query: 1018 DRALVSTQGEI 1028
DRA V+TQGE+
Sbjct: 1019 DRASVTTQGEL 1029
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463371|ref|XP_003601967.1| ABC transporter D family member [Medicago truncatula] gi|355491015|gb|AES72218.1| ABC transporter D family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1718 bits (4450), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 844/1031 (81%), Positives = 927/1031 (89%), Gaps = 6/1031 (0%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
MPSLQ L T HG+ L+SRRK ILLASGIL+AGGTAAY++SRF K D FGH N +
Sbjct: 1 MPSLQLLKFTRHGQNFLASRRKAILLASGILIAGGTAAYMQSRFRVNKHDLFGHCNEQNN 60
Query: 61 SERKPDKAVANRSNIKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTAL 120
+ + V N S K QKKGG+KSLQVL AILLS+MG++G ++LLALV VVLRTAL
Sbjct: 61 DKEVKKEEVINDSTKPKNKQKKGGMKSLQVLTAILLSDMGQLGVKNLLALVVTVVLRTAL 120
Query: 121 SNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVT 180
SNRLAKVQGFLFRAAFLRR PLFF+LISENI+LCFLLST+HSTSKYITGTLSL FRK++T
Sbjct: 121 SNRLAKVQGFLFRAAFLRRAPLFFRLISENIILCFLLSTIHSTSKYITGTLSLHFRKVLT 180
Query: 181 KLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240
KLIH+ YFENM YYKISHVDGRIT+PEQR+ASDVP+FCSELSE+VQDDL AVTDGLLYTW
Sbjct: 181 KLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPKFCSELSEIVQDDLAAVTDGLLYTW 240
Query: 241 RLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESI 300
RLCSYASPKYVFWILAYVLGAG +RNFSP FGKLMS EQQLEG+YRQLHSRLRTH+ESI
Sbjct: 241 RLCSYASPKYVFWILAYVLGAGAAIRNFSPPFGKLMSTEQQLEGDYRQLHSRLRTHSESI 300
Query: 301 AFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFA 360
AFYGGE +EE+HIQ KFK L RHMR VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF+
Sbjct: 301 AFYGGERREEAHIQHKFKTLVRHMRRVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFS 360
Query: 361 GNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVIS 420
GNL+PD+STLGRA+MLSNLRYHTSVIISLFQSLGTLSI +RRLNRLSGYADRI+ELM +S
Sbjct: 361 GNLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSIGARRLNRLSGYADRIYELMAVS 420
Query: 421 RELSIEDK--SPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITG 478
RELS+ D+ S QR GSRN SEANYIEFS VKVVTPTGNVLV++L+L+VE GSNLLITG
Sbjct: 421 RELSLVDEKSSLQRQGSRNCISEANYIEFSNVKVVTPTGNVLVDDLSLRVEQGSNLLITG 480
Query: 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 538
PNGSGKSSLFRVLGGLWPL+SGHI KPG+GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT
Sbjct: 481 PNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 540
Query: 539 SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598
S+QEVEPLT GMVELLKNVDLEYLLDRY PEKE+NWGDELSLGEQQRLGMARLFYHKPK
Sbjct: 541 SNQEVEPLTDHGMVELLKNVDLEYLLDRYLPEKEVNWGDELSLGEQQRLGMARLFYHKPK 600
Query: 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDK 658
FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W VH +
Sbjct: 601 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYR 660
Query: 659 RDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPI 718
R+ SS T+ GI+ +K+SET RQ+DA AV++AF +KKDSAFS+ KA+SY+++VI +SP
Sbjct: 661 REDSS--TEMGIDTMKASETKRQTDAKAVQRAFAMSKKDSAFSSSKAESYIADVIYSSPS 718
Query: 719 ADH-NVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDR 777
+H N+P V PQL RILPLRVA MFKVLVPTVFDKQGAQLLAVA LVVSRTW+SDR
Sbjct: 719 TNHTNLPSTV-PQLHGNTRILPLRVAAMFKVLVPTVFDKQGAQLLAVALLVVSRTWVSDR 777
Query: 778 IASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHL 837
IASLNGTTVK+VLEQDKA+F+RLIG+SVLQSAASSFIAPSIRHLTARLALGWRIR+TQHL
Sbjct: 778 IASLNGTTVKFVLEQDKAAFIRLIGISVLQSAASSFIAPSIRHLTARLALGWRIRLTQHL 837
Query: 838 LKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 897
LK+YLR N FYKVF+M+SKS+DADQRIT DLEKLTTDLSGLVTG+VKPSVDILWFTWRMK
Sbjct: 838 LKNYLRSNVFYKVFHMASKSVDADQRITQDLEKLTTDLSGLVTGLVKPSVDILWFTWRMK 897
Query: 898 ALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFF 957
LTGQRGVAILYAYMLLGLGFLR+VTP+FGDL S+EQQLEG FRFMHERL HAESVAFF
Sbjct: 898 LLTGQRGVAILYAYMLLGLGFLRTVTPDFGDLISQEQQLEGIFRFMHERLCTHAESVAFF 957
Query: 958 GGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKG 1017
GGGAREKAM+ESRF +LL HS LLKKK LFGILDDF+TKQLPHNVTW LSLLYAMEHKG
Sbjct: 958 GGGAREKAMVESRFSDLLIHSQYLLKKKCLFGILDDFITKQLPHNVTWLLSLLYAMEHKG 1017
Query: 1018 DRALVSTQGEI 1028
DRA++ST G I
Sbjct: 1018 DRAVISTLGRI 1028
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463369|ref|XP_003601966.1| ABC transporter D family member [Medicago truncatula] gi|355491014|gb|AES72217.1| ABC transporter D family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1709 bits (4427), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 844/1038 (81%), Positives = 927/1038 (89%), Gaps = 13/1038 (1%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
MPSLQ L T HG+ L+SRRK ILLASGIL+AGGTAAY++SRF K D FGH N +
Sbjct: 1 MPSLQLLKFTRHGQNFLASRRKAILLASGILIAGGTAAYMQSRFRVNKHDLFGHCNEQNN 60
Query: 61 SERKPDKAVANRSNIKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTAL 120
+ + V N S K QKKGG+KSLQVL AILLS+MG++G ++LLALV VVLRTAL
Sbjct: 61 DKEVKKEEVINDSTKPKNKQKKGGMKSLQVLTAILLSDMGQLGVKNLLALVVTVVLRTAL 120
Query: 121 SNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVT 180
SNRLAKVQGFLFRAAFLRR PLFF+LISENI+LCFLLST+HSTSKYITGTLSL FRK++T
Sbjct: 121 SNRLAKVQGFLFRAAFLRRAPLFFRLISENIILCFLLSTIHSTSKYITGTLSLHFRKVLT 180
Query: 181 KLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240
KLIH+ YFENM YYKISHVDGRIT+PEQR+ASDVP+FCSELSE+VQDDL AVTDGLLYTW
Sbjct: 181 KLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPKFCSELSEIVQDDLAAVTDGLLYTW 240
Query: 241 RLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESI 300
RLCSYASPKYVFWILAYVLGAG +RNFSP FGKLMS EQQLEG+YRQLHSRLRTH+ESI
Sbjct: 241 RLCSYASPKYVFWILAYVLGAGAAIRNFSPPFGKLMSTEQQLEGDYRQLHSRLRTHSESI 300
Query: 301 AFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFA 360
AFYGGE +EE+HIQ KFK L RHMR VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF+
Sbjct: 301 AFYGGERREEAHIQHKFKTLVRHMRRVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFS 360
Query: 361 GNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVIS 420
GNL+PD+STLGRA+MLSNLRYHTSVIISLFQSLGTLSI +RRLNRLSGYADRI+ELM +S
Sbjct: 361 GNLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSIGARRLNRLSGYADRIYELMAVS 420
Query: 421 RELSIEDK--SPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITG 478
RELS+ D+ S QR GSRN SEANYIEFS VKVVTPTGNVLV++L+L+VE GSNLLITG
Sbjct: 421 RELSLVDEKSSLQRQGSRNCISEANYIEFSNVKVVTPTGNVLVDDLSLRVEQGSNLLITG 480
Query: 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 538
PNGSGKSSLFRVLGGLWPL+SGHI KPG+GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT
Sbjct: 481 PNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 540
Query: 539 SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598
S+QEVEPLT GMVELLKNVDLEYLLDRY PEKE+NWGDELSLGEQQRLGMARLFYHKPK
Sbjct: 541 SNQEVEPLTDHGMVELLKNVDLEYLLDRYLPEKEVNWGDELSLGEQQRLGMARLFYHKPK 600
Query: 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDK 658
FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W VH +
Sbjct: 601 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYR 660
Query: 659 RDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKK-------DSAFSNPKAQSYVSE 711
R+ SS T+ GI+ +K+SET RQ+DA AV++AF +KK DSAFS+ KA+SY+++
Sbjct: 661 REDSS--TEMGIDTMKASETKRQTDAKAVQRAFAMSKKIFIPFLQDSAFSSSKAESYIAD 718
Query: 712 VIAASPIADH-NVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVS 770
VI +SP +H N+P V PQL RILPLRVA MFKVLVPTVFDKQGAQLLAVA LVVS
Sbjct: 719 VIYSSPSTNHTNLPSTV-PQLHGNTRILPLRVAAMFKVLVPTVFDKQGAQLLAVALLVVS 777
Query: 771 RTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWR 830
RTW+SDRIASLNGTTVK+VLEQDKA+F+RLIG+SVLQSAASSFIAPSIRHLTARLALGWR
Sbjct: 778 RTWVSDRIASLNGTTVKFVLEQDKAAFIRLIGISVLQSAASSFIAPSIRHLTARLALGWR 837
Query: 831 IRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDIL 890
IR+TQHLLK+YLR N FYKVF+M+SKS+DADQRIT DLEKLTTDLSGLVTG+VKPSVDIL
Sbjct: 838 IRLTQHLLKNYLRSNVFYKVFHMASKSVDADQRITQDLEKLTTDLSGLVTGLVKPSVDIL 897
Query: 891 WFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAH 950
WFTWRMK LTGQRGVAILYAYMLLGLGFLR+VTP+FGDL S+EQQLEG FRFMHERL H
Sbjct: 898 WFTWRMKLLTGQRGVAILYAYMLLGLGFLRTVTPDFGDLISQEQQLEGIFRFMHERLCTH 957
Query: 951 AESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLL 1010
AESVAFFGGGAREKAM+ESRF +LL HS LLKKK LFGILDDF+TKQLPHNVTW LSLL
Sbjct: 958 AESVAFFGGGAREKAMVESRFSDLLIHSQYLLKKKCLFGILDDFITKQLPHNVTWLLSLL 1017
Query: 1011 YAMEHKGDRALVSTQGEI 1028
YAMEHKGDRA++ST G I
Sbjct: 1018 YAMEHKGDRAVISTLGRI 1035
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512707|ref|XP_003525058.1| PREDICTED: ABC transporter D family member 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1709 bits (4425), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 843/1037 (81%), Positives = 920/1037 (88%), Gaps = 25/1037 (2%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
M SLQ LT HGR L+SRRKT+LLA+GILVAGGTAAY++SRF + D LGD
Sbjct: 1 MSSLQLFQLTHHGRSFLASRRKTLLLATGILVAGGTAAYVQSRFRGNRDDL------LGD 54
Query: 61 S-ERKPDKAVANRSNIK-----KANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIV 114
S ER DK + +K K QKKGGLKSLQVLAAILLSEMG++GA++LL+LV IV
Sbjct: 55 SYERNNDKELTKEEVMKGTSAPKNKQKKGGLKSLQVLAAILLSEMGQLGAKNLLSLVSIV 114
Query: 115 VLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQ 174
VLRT LSNRLAKVQGFLFRAAFLRRVPLF +LISENILLCFLLSTM STSKYITGTLSL
Sbjct: 115 VLRTTLSNRLAKVQGFLFRAAFLRRVPLFLRLISENILLCFLLSTMQSTSKYITGTLSLH 174
Query: 175 FRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTD 234
FRKI+TKLIH+RYFENM YYKISHVDGRIT+PEQR+ASDVPRFCSELSE+VQDDLTAVTD
Sbjct: 175 FRKILTKLIHSRYFENMVYYKISHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVTD 234
Query: 235 GLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLR 294
GLLYTWRLCSYASPKY+FWILAYVLGAG +RNFSPAFGKLMS+EQ+LEGEYRQLHSRLR
Sbjct: 235 GLLYTWRLCSYASPKYIFWILAYVLGAGATIRNFSPAFGKLMSREQELEGEYRQLHSRLR 294
Query: 295 THAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILI 354
TH+ESIAFYGGE +EE+HIQQKF+ L RH+ VLHDHWWFGMIQDFLLKYLGATVAVILI
Sbjct: 295 THSESIAFYGGERREEAHIQQKFRTLVRHINRVLHDHWWFGMIQDFLLKYLGATVAVILI 354
Query: 355 IEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIH 414
IEPFF+G+L+PD+STLGRA+MLSNLRYHTSVIISLFQSLGTLSIS+RRLNRLSGYADRIH
Sbjct: 355 IEPFFSGHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIH 414
Query: 415 ELMVISRELSIED--KSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGS 472
ELM ISRELS+++ S QR GSRNY SEANY+ F GVKVVTPTGNVLV++LTLKV+ GS
Sbjct: 415 ELMAISRELSLDNGKSSLQRQGSRNYISEANYVGFYGVKVVTPTGNVLVDDLTLKVQSGS 474
Query: 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQ 532
NLLITGPNGSGKSSLFRVLGGLWPLVSGHI KPGVGSDLNKEIFYVPQRPYTAVGTLRDQ
Sbjct: 475 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYTAVGTLRDQ 534
Query: 533 LIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592
LIYPLT+DQEVEPLT MVELLKNVDLEYLLDRYP E E+NWGDELSLGEQQRLGMARL
Sbjct: 535 LIYPLTADQEVEPLTDSRMVELLKNVDLEYLLDRYPSETEVNWGDELSLGEQQRLGMARL 594
Query: 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGE 652
FYHKPKFAILDECTSAVTTDMEERFCA V AMGTSCITISHRPALVAFHDVVLSLDGEG
Sbjct: 595 FYHKPKFAILDECTSAVTTDMEERFCANVLAMGTSCITISHRPALVAFHDVVLSLDGEGG 654
Query: 653 WRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEV 712
W VH +R+ SS T+ G + +K+ ET RQSDA AV++AF N KAQS +SEV
Sbjct: 655 WSVHHRREDSS--TELGNDTVKALETKRQSDAKAVQRAFAM--------NKKAQSDISEV 704
Query: 713 -IAASPIADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSR 771
IA+SP N+ PQL R LP+RVA M KVLVPT+FDKQGA+LLAVAFLVVSR
Sbjct: 705 IIASSPSMKRNISPSAVPQLHGNTRALPMRVAAMCKVLVPTIFDKQGARLLAVAFLVVSR 764
Query: 772 TWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRI 831
TW+SDRIASLNGTTVK VLEQDKASF+RLIG+SV+QSAASSFIAPSIRHLTARLALG RI
Sbjct: 765 TWVSDRIASLNGTTVKLVLEQDKASFIRLIGISVIQSAASSFIAPSIRHLTARLALGGRI 824
Query: 832 RMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILW 891
R+TQHLLK+YLR N+FYKVF+M+SK++DADQRITHDLEKLTTDLSGLVTGMVKPSVDILW
Sbjct: 825 RLTQHLLKNYLRNNAFYKVFHMASKNVDADQRITHDLEKLTTDLSGLVTGMVKPSVDILW 884
Query: 892 FTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHA 951
FTWRMK LTG+RGVAILYAYMLLGLGFLR+VTP+FGDL S+EQQLEGTFRFMHERL HA
Sbjct: 885 FTWRMKLLTGRRGVAILYAYMLLGLGFLRTVTPDFGDLISQEQQLEGTFRFMHERLCTHA 944
Query: 952 ESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLY 1011
ESVAFFGGGAREKAM+ESRFRELL HS LLKKKWLFGILDDF+TKQLPHNVTWGLSL+Y
Sbjct: 945 ESVAFFGGGAREKAMVESRFRELLLHSKYLLKKKWLFGILDDFITKQLPHNVTWGLSLIY 1004
Query: 1012 AMEHKGDRALVSTQGEI 1028
AMEHKGDRA V+TQGE+
Sbjct: 1005 AMEHKGDRASVTTQGEL 1021
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18420546|ref|NP_568072.1| ABC transporter D family member 1 [Arabidopsis thaliana] gi|75332181|sp|Q94FB9.1|AB1D_ARATH RecName: Full=ABC transporter D family member 1; Short=ABC transporter ABCD.1; Short=AtABCD1; AltName: Full=Peroxisomal ABC transporter 1; Short=AtPXA1; AltName: Full=Protein ACETATE NON-UTILIZING 2; AltName: Full=Protein COMATOSE; AltName: Full=Protein PEROXISOME DEFECTIVE 3; Short=Ped3p gi|15320529|gb|AAK95343.1|AF378120_1 peroxisomal ABC transporter PXA1 [Arabidopsis thaliana] gi|20803766|emb|CAC85290.1| ABC transporter [Arabidopsis thaliana] gi|332661726|gb|AEE87126.1| ABC transporter D family member 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1707 bits (4422), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 831/1031 (80%), Positives = 919/1031 (89%), Gaps = 4/1031 (0%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
MPSLQ L LTE GRG+++SRRK+ILLA+GI+ AGGTA YLKSR +S++PD+ NG D
Sbjct: 1 MPSLQLLQLTERGRGLVASRRKSILLAAGIVAAGGTAVYLKSRVASRRPDSSRLCNGQSD 60
Query: 61 SERKPDKAVANRSN--IKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRT 118
+ +K A N I +K GGLKSLQVL AILLS+MGKMGARDLLALV VV RT
Sbjct: 61 DDETLEKLTATDQNAKITTKKKKGGGLKSLQVLTAILLSQMGKMGARDLLALVATVVFRT 120
Query: 119 ALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKI 178
ALSNRLAKVQGFLFRAAFLRR PLF +LISENI+LCF+LST+HSTSKYITG LSL+FRKI
Sbjct: 121 ALSNRLAKVQGFLFRAAFLRRAPLFLRLISENIMLCFMLSTLHSTSKYITGALSLRFRKI 180
Query: 179 VTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLY 238
+TK+IH+ YFENM YYKISHVDGRITHPEQR+ASDVPRF SELS+L+ DDLTAVTDG+LY
Sbjct: 181 LTKIIHSHYFENMVYYKISHVDGRITHPEQRIASDVPRFSSELSDLILDDLTAVTDGILY 240
Query: 239 TWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAE 298
WRLCSYASPKY+FWILAYVLGAGT +RNFSP+FGKLMSKEQQLEGEYRQLHSRLRTH+E
Sbjct: 241 AWRLCSYASPKYIFWILAYVLGAGTAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSE 300
Query: 299 SIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 358
SIAFYGGE +EESHIQQKFK L HM VLHDHWWFGMIQDFLLKYLGATVAVILIIEPF
Sbjct: 301 SIAFYGGETREESHIQQKFKNLVSHMSHVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 360
Query: 359 FAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMV 418
F+G+L+PD STLGRA+MLSN+RYHTSVIISLFQ+LGTLSISSRRLNRLSGYADRIHELM
Sbjct: 361 FSGHLRPDDSTLGRAEMLSNIRYHTSVIISLFQALGTLSISSRRLNRLSGYADRIHELMA 420
Query: 419 ISRELSIEDKSP-QRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLIT 477
+SRELS +DKS QRN SRNY SEANY+EFS VKVVTPTGNVLVE+LTL+VE GSNLLIT
Sbjct: 421 VSRELSGDDKSSFQRNRSRNYLSEANYVEFSDVKVVTPTGNVLVEDLTLRVEQGSNLLIT 480
Query: 478 GPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPL 537
GPNGSGKSSLFRVLGGLWPLVSGHI KPGVGSDLNKEIFYVPQRPY AVGTLRDQLIYPL
Sbjct: 481 GPNGSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYMAVGTLRDQLIYPL 540
Query: 538 TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597
TS QE E LT GMVELLKNVDLEYLLDRY PEKE+NWGDELSLGEQQRLGMARLFYHKP
Sbjct: 541 TSGQESELLTEIGMVELLKNVDLEYLLDRYQPEKEVNWGDELSLGEQQRLGMARLFYHKP 600
Query: 598 KFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHD 657
KFAILDECTSAVTTDMEERF AKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W VH
Sbjct: 601 KFAILDECTSAVTTDMEERFAAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHY 660
Query: 658 KRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASP 717
KRD S+++T + I+ +KSS+TDRQ+DAM V++AF A+K+SA +N KAQSY +++IA SP
Sbjct: 661 KRDDSALLTDAEIDSVKSSDTDRQNDAMVVQRAFAAARKESA-TNSKAQSYQTQLIARSP 719
Query: 718 IADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDR 777
+ D +V LP FPQ +++ R LP RVA M VL+PT+FDKQGAQLLAVA LVVSRT ISDR
Sbjct: 720 VVDKSVVLPRFPQPQTSQRALPSRVAAMLNVLIPTIFDKQGAQLLAVACLVVSRTLISDR 779
Query: 778 IASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHL 837
IASLNGTTVKYVLEQDKA+FVRLIG+SVLQS ASS IAPS+RHLT RLALGWRIR+TQHL
Sbjct: 780 IASLNGTTVKYVLEQDKAAFVRLIGLSVLQSGASSIIAPSLRHLTQRLALGWRIRLTQHL 839
Query: 838 LKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 897
L++YLR N+FYKVF+MS SIDADQR+T DLEKLT DLSGL+TGMVKPSVDILWFTWRMK
Sbjct: 840 LRNYLRNNAFYKVFHMSGNSIDADQRLTRDLEKLTADLSGLLTGMVKPSVDILWFTWRMK 899
Query: 898 ALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFF 957
LTGQRGVAILY YMLLGLGFLR V P+FGDL EQQLEG FRFMHERL HAES+AFF
Sbjct: 900 LLTGQRGVAILYTYMLLGLGFLRRVAPDFGDLAGEEQQLEGKFRFMHERLNTHAESIAFF 959
Query: 958 GGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKG 1017
GGGAREKAM++ +FR LL+HSL+LL+KKWL+GILDDFVTKQLP+NVTWGLSLLYA+EHKG
Sbjct: 960 GGGAREKAMVDKKFRALLDHSLMLLRKKWLYGILDDFVTKQLPNNVTWGLSLLYALEHKG 1019
Query: 1018 DRALVSTQGEI 1028
DRALVSTQGE+
Sbjct: 1020 DRALVSTQGEL 1030
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18478510|dbj|BAB84550.1| peroxisomal ABC transporter [Arabidopsis thaliana] gi|18478515|dbj|BAB84551.1| peroxisomal ABC transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1707 bits (4422), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 831/1031 (80%), Positives = 919/1031 (89%), Gaps = 4/1031 (0%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
MPSLQ L LTE GRG+++SRRK+ILLA+GI+ AGGTA YLKSR +S++PD+ NG D
Sbjct: 1 MPSLQLLQLTERGRGLVASRRKSILLAAGIVAAGGTAVYLKSRVASRRPDSSRLCNGQSD 60
Query: 61 SERKPDKAVANRSN--IKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRT 118
+ +K A N I +K GGLKSLQVL AILLS+MGKMGARDLLALV VV RT
Sbjct: 61 DDEALEKLTATDQNAKITTKKKKGGGLKSLQVLTAILLSQMGKMGARDLLALVATVVFRT 120
Query: 119 ALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKI 178
ALSNRLAKVQGFLFRAAFLRR PLF +LISENI+LCF+LST+HSTSKYITG LSL+FRKI
Sbjct: 121 ALSNRLAKVQGFLFRAAFLRRAPLFLRLISENIMLCFMLSTLHSTSKYITGALSLRFRKI 180
Query: 179 VTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLY 238
+TK+IH+ YFENM YYKISHVDGRITHPEQR+ASDVPRF SELS+L+ DDLTAVTDG+LY
Sbjct: 181 LTKIIHSHYFENMVYYKISHVDGRITHPEQRIASDVPRFSSELSDLILDDLTAVTDGILY 240
Query: 239 TWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAE 298
WRLCSYASPKY+FWILAYVLGAGT +RNFSP+FGKLMSKEQQLEGEYRQLHSRLRTH+E
Sbjct: 241 AWRLCSYASPKYIFWILAYVLGAGTAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSE 300
Query: 299 SIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 358
SIAFYGGE +EESHIQQKFK L HM VLHDHWWFGMIQDFLLKYLGATVAVILIIEPF
Sbjct: 301 SIAFYGGETREESHIQQKFKNLVSHMSHVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 360
Query: 359 FAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMV 418
F+G+L+PD STLGRA+MLSN+RYHTSVIISLFQ+LGTLSISSRRLNRLSGYADRIHELM
Sbjct: 361 FSGHLRPDDSTLGRAEMLSNIRYHTSVIISLFQALGTLSISSRRLNRLSGYADRIHELMA 420
Query: 419 ISRELSIEDKSP-QRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLIT 477
+SRELS +DKS QRN SRNY SEANY+EFS VKVVTPTGNVLVE+LTL+VE GSNLLIT
Sbjct: 421 VSRELSGDDKSSFQRNRSRNYLSEANYVEFSDVKVVTPTGNVLVEDLTLRVEQGSNLLIT 480
Query: 478 GPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPL 537
GPNGSGKSSLFRVLGGLWPLVSGHI KPGVGSDLNKEIFYVPQRPY AVGTLRDQLIYPL
Sbjct: 481 GPNGSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYMAVGTLRDQLIYPL 540
Query: 538 TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597
TS QE E LT GMVELLKNVDLEYLLDRY PEKE+NWGDELSLGEQQRLGMARLFYHKP
Sbjct: 541 TSGQESELLTEIGMVELLKNVDLEYLLDRYQPEKEVNWGDELSLGEQQRLGMARLFYHKP 600
Query: 598 KFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHD 657
KFAILDECTSAVTTDMEERF AKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W VH
Sbjct: 601 KFAILDECTSAVTTDMEERFAAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHY 660
Query: 658 KRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASP 717
KRD S+++T + I+ +KSS+TDRQ+DAM V++AF A+K+SA +N KAQSY +++IA SP
Sbjct: 661 KRDDSALLTDAEIDSVKSSDTDRQNDAMVVQRAFAAARKESA-TNSKAQSYQTQLIARSP 719
Query: 718 IADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDR 777
+ D +V LP FPQ +++ R LP RVA M VL+PT+FDKQGAQLLAVA LVVSRT ISDR
Sbjct: 720 VVDKSVVLPRFPQPQTSQRALPSRVAAMLNVLIPTIFDKQGAQLLAVACLVVSRTLISDR 779
Query: 778 IASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHL 837
IASLNGTTVKYVLEQDKA+FVRLIG+SVLQS ASS IAPS+RHLT RLALGWRIR+TQHL
Sbjct: 780 IASLNGTTVKYVLEQDKAAFVRLIGLSVLQSGASSIIAPSLRHLTQRLALGWRIRLTQHL 839
Query: 838 LKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 897
L++YLR N+FYKVF+MS SIDADQR+T DLEKLT DLSGL+TGMVKPSVDILWFTWRMK
Sbjct: 840 LRNYLRNNAFYKVFHMSGNSIDADQRLTRDLEKLTADLSGLLTGMVKPSVDILWFTWRMK 899
Query: 898 ALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFF 957
LTGQRGVAILY YMLLGLGFLR V P+FGDL EQQLEG FRFMHERL HAES+AFF
Sbjct: 900 LLTGQRGVAILYTYMLLGLGFLRRVAPDFGDLAGEEQQLEGKFRFMHERLNTHAESIAFF 959
Query: 958 GGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKG 1017
GGGAREKAM++ +FR LL+HSL+LL+KKWL+GILDDFVTKQLP+NVTWGLSLLYA+EHKG
Sbjct: 960 GGGAREKAMVDKKFRALLDHSLMLLRKKWLYGILDDFVTKQLPNNVTWGLSLLYALEHKG 1019
Query: 1018 DRALVSTQGEI 1028
DRALVSTQGE+
Sbjct: 1020 DRALVSTQGEL 1030
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334187339|ref|NP_001190973.1| ABC transporter D family member 1 [Arabidopsis thaliana] gi|332661728|gb|AEE87128.1| ABC transporter D family member 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1702 bits (4408), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 831/1032 (80%), Positives = 919/1032 (89%), Gaps = 5/1032 (0%)
Query: 1 MPSLQSLPLTEHGRGILSSRRKTILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGD 60
MPSLQ L LTE GRG+++SRRK+ILLA+GI+ AGGTA YLKSR +S++PD+ NG D
Sbjct: 1 MPSLQLLQLTERGRGLVASRRKSILLAAGIVAAGGTAVYLKSRVASRRPDSSRLCNGQSD 60
Query: 61 SERKPDKAVANRSN--IKKANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRT 118
+ +K A N I +K GGLKSLQVL AILLS+MGKMGARDLLALV VV RT
Sbjct: 61 DDETLEKLTATDQNAKITTKKKKGGGLKSLQVLTAILLSQMGKMGARDLLALVATVVFRT 120
Query: 119 ALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKI 178
ALSNRLAKVQGFLFRAAFLRR PLF +LISENI+LCF+LST+HSTSKYITG LSL+FRKI
Sbjct: 121 ALSNRLAKVQGFLFRAAFLRRAPLFLRLISENIMLCFMLSTLHSTSKYITGALSLRFRKI 180
Query: 179 VTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLY 238
+TK+IH+ YFENM YYKISHVDGRITHPEQR+ASDVPRF SELS+L+ DDLTAVTDG+LY
Sbjct: 181 LTKIIHSHYFENMVYYKISHVDGRITHPEQRIASDVPRFSSELSDLILDDLTAVTDGILY 240
Query: 239 TWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAE 298
WRLCSYASPKY+FWILAYVLGAGT +RNFSP+FGKLMSKEQQLEGEYRQLHSRLRTH+E
Sbjct: 241 AWRLCSYASPKYIFWILAYVLGAGTAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSE 300
Query: 299 SIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 358
SIAFYGGE +EESHIQQKFK L HM VLHDHWWFGMIQDFLLKYLGATVAVILIIEPF
Sbjct: 301 SIAFYGGETREESHIQQKFKNLVSHMSHVLHDHWWFGMIQDFLLKYLGATVAVILIIEPF 360
Query: 359 FAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMV 418
F+G+L+PD STLGRA+MLSN+RYHTSVIISLFQ+LGTLSISSRRLNRLSGYADRIHELM
Sbjct: 361 FSGHLRPDDSTLGRAEMLSNIRYHTSVIISLFQALGTLSISSRRLNRLSGYADRIHELMA 420
Query: 419 ISRELSIEDKSP-QRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLIT 477
+SRELS +DKS QRN SRNY SEANY+EFS VKVVTPTGNVLVE+LTL+VE GSNLLIT
Sbjct: 421 VSRELSGDDKSSFQRNRSRNYLSEANYVEFSDVKVVTPTGNVLVEDLTLRVEQGSNLLIT 480
Query: 478 GPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPL 537
GPNGSGKSSLFRVLGGLWPLVSGHI KPGVGSDLNKEIFYVPQRPY AVGTLRDQLIYPL
Sbjct: 481 GPNGSGKSSLFRVLGGLWPLVSGHIVKPGVGSDLNKEIFYVPQRPYMAVGTLRDQLIYPL 540
Query: 538 TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597
TS QE E LT GMVELLKNVDLEYLLDRY PEKE+NWGDELSLGEQQRLGMARLFYHKP
Sbjct: 541 TSGQESELLTEIGMVELLKNVDLEYLLDRYQPEKEVNWGDELSLGEQQRLGMARLFYHKP 600
Query: 598 KFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHD 657
KFAILDECTSAVTTDMEERF AKVRAMGTSCITISHRPALVAFHDVVLSLDGEG W VH
Sbjct: 601 KFAILDECTSAVTTDMEERFAAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHY 660
Query: 658 KRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASP 717
KRD S+++T + I+ +KSS+TDRQ+DAM V++AF A+K+SA +N KAQSY +++IA SP
Sbjct: 661 KRDDSALLTDAEIDSVKSSDTDRQNDAMVVQRAFAAARKESA-TNSKAQSYQTQLIARSP 719
Query: 718 IADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDR 777
+ D +V LP FPQ +++ R LP RVA M VL+PT+FDKQGAQLLAVA LVVSRT ISDR
Sbjct: 720 VVDKSVVLPRFPQPQTSQRALPSRVAAMLNVLIPTIFDKQGAQLLAVACLVVSRTLISDR 779
Query: 778 IASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHL 837
IASLNGTTVKYVLEQDKA+FVRLIG+SVLQS ASS IAPS+RHLT RLALGWRIR+TQHL
Sbjct: 780 IASLNGTTVKYVLEQDKAAFVRLIGLSVLQSGASSIIAPSLRHLTQRLALGWRIRLTQHL 839
Query: 838 LKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMK 897
L++YLR N+FYKVF+MS SIDADQR+T DLEKLT DLSGL+TGMVKPSVDILWFTWRMK
Sbjct: 840 LRNYLRNNAFYKVFHMSGNSIDADQRLTRDLEKLTADLSGLLTGMVKPSVDILWFTWRMK 899
Query: 898 ALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFF 957
LTGQRGVAILY YMLLGLGFLR V P+FGDL EQQLEG FRFMHERL HAES+AFF
Sbjct: 900 LLTGQRGVAILYTYMLLGLGFLRRVAPDFGDLAGEEQQLEGKFRFMHERLNTHAESIAFF 959
Query: 958 GGGAREKA-MIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHK 1016
GGGAREKA M++ +FR LL+HSL+LL+KKWL+GILDDFVTKQLP+NVTWGLSLLYA+EHK
Sbjct: 960 GGGAREKAQMVDKKFRALLDHSLMLLRKKWLYGILDDFVTKQLPNNVTWGLSLLYALEHK 1019
Query: 1017 GDRALVSTQGEI 1028
GDRALVSTQGE+
Sbjct: 1020 GDRALVSTQGEL 1031
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1064 | ||||||
| UNIPROTKB|Q5F4B9 | 660 | ABCD3 "Uncharacterized protein | 0.506 | 0.816 | 0.354 | 2.4e-83 | |
| RGD|2007 | 659 | Abcd3 "ATP-binding cassette, s | 0.534 | 0.863 | 0.337 | 3.1e-83 | |
| UNIPROTKB|A7Z038 | 656 | ABCD3 "Uncharacterized protein | 0.506 | 0.821 | 0.342 | 1e-82 | |
| MGI|MGI:1349216 | 659 | Abcd3 "ATP-binding cassette, s | 0.534 | 0.863 | 0.335 | 1.7e-82 | |
| WB|WBGene00004058 | 665 | pmp-1 [Caenorhabditis elegans | 0.513 | 0.821 | 0.329 | 1.7e-82 | |
| ZFIN|ZDB-GENE-050517-27 | 766 | abcd1 "ATP-binding cassette, s | 0.202 | 0.280 | 0.484 | 1.9e-82 | |
| WB|WBGene00004061 | 734 | pmp-4 [Caenorhabditis elegans | 0.198 | 0.287 | 0.490 | 5.4e-82 | |
| ZFIN|ZDB-GENE-050517-29 | 659 | abcd3b "ATP-binding cassette, | 0.574 | 0.927 | 0.333 | 2.5e-81 | |
| ZFIN|ZDB-GENE-040426-2868 | 656 | abcd3a "ATP-binding cassette, | 0.544 | 0.882 | 0.336 | 2.5e-81 | |
| DICTYBASE|DDB_G0293194 | 741 | abcD2 "ABC transporter D famil | 0.197 | 0.283 | 0.465 | 6.1e-81 |
| UNIPROTKB|Q5F4B9 ABCD3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 201/567 (35%), Positives = 306/567 (53%)
Query: 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCF-LLSTMHSTSK 165
LL + ++V+RT + + G + +A + R F+ N + +S +++ K
Sbjct: 88 LLLIAVMLVVRTYCDIWMIQ-NGTVIESAIIGRSRKDFKKYLFNFIAAMPAISLVNNFLK 146
Query: 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELV 225
Y L L FR +TK ++ Y + YYK+ ++D RI +P+Q L DV +FC+ + +L
Sbjct: 147 YGLNELKLCFRVRLTKYLYEEYLKAYTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLY 206
Query: 226 QDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGE 285
+ D +LY ++L S + ++AY++ +G + GK+ EQ+ EGE
Sbjct: 207 SNLSKPFLDIVLYIFKLTSAIGAQGPASMMAYLIVSGFFLTRLRRPIGKMTIIEQKYEGE 266
Query: 286 YRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYL 345
YR ++SRL T++E IAFY G +E+ I + F+ L H+ + + G I + KYL
Sbjct: 267 YRYVNSRLITNSEEIAFYNGNLREKQTIHRTFRKLVEHLHNFILFRFSMGFIDTIIAKYL 326
Query: 346 GATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTXXXXXXXXX 404
V +++ PF NL P A++L + +++ + Q+LG
Sbjct: 327 ATVVGYLVVSRPFL--NLADPRHQNSTHAELLEDYYQSGRMLLRMSQALGRIVLAGREMT 384
Query: 405 XXXGYADRIHELMVISRELS----------------IEDKSPQRNGSRNYFSEANYIEFS 448
G+ RI ELM + ++L+ I+ P GS + N I+F
Sbjct: 385 RLAGFTARITELMQVLKDLNSGKYQRTMVSQEKDADIKQALPLIPGSGEIINTDNLIKFD 444
Query: 449 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG 508
V +VTP G+VL+++L +V G+N+LI GPNG GKSSLFRVLG LWPL G + KP G
Sbjct: 445 HVPLVTPNGDVLIQDLNFEVRSGANVLICGPNGCGKSSLFRVLGELWPLFGGRLTKPVRG 504
Query: 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLEYLLDRY 567
++FYVPQRPY +GTLRDQ+IYP T DQ + ++ + E L NV L +L+R
Sbjct: 505 -----KLFYVPQRPYMTLGTLRDQVIYPDTLEDQRKKGISDQVLKEYLDNVQLGQILERE 559
Query: 568 PPEKEI-NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 626
+ +W D LS GE+QR+ MARLFYHKP+FAILDECTSAV+ D+E + R +G
Sbjct: 560 GGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEGYIYSHCRKVGI 619
Query: 627 SCITISHRPALVAFHDVVLSLDGEGEW 653
+ T+SHR +L HD L +DG G +
Sbjct: 620 TLFTVSHRKSLWKHHDFYLHMDGRGNY 646
|
|
| RGD|2007 Abcd3 "ATP-binding cassette, subfamily D (ALD), member 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
Identities = 204/605 (33%), Positives = 321/605 (53%)
Query: 79 NQKKGGLKSLQVLAAILLSEMGK----MGARDLLALVG-IVVLRTALSNR----LAKVQ- 128
N +K G K V+ + LS + + M R G ++++ L +R + +Q
Sbjct: 47 NNEKEGKKERAVVDKVFLSRLSQILKIMVPRTFCKETGYLILIAVMLVSRTYCDVWMIQN 106
Query: 129 GFLFRAAFLRRVPLFFQLISENILLCF-LLSTMHSTSKYITGTLSLQFRKIVTKLIHTRY 187
G L + + R F+ N + L+S +++ KY L L FR +T+ ++ Y
Sbjct: 107 GTLIESGIIGRSSKDFKRYLFNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTRYLYEEY 166
Query: 188 FENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYAS 247
+ YYK+ ++D RI +P+Q L DV +FC+ + +L + D +LY ++L S
Sbjct: 167 LQAFTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIG 226
Query: 248 PKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGEN 307
+ ++AY+L +G + GK+ EQ+ EGEYR ++SRL T++E IAFY G
Sbjct: 227 AQGPASMMAYLLVSGLFLTRLRRPIGKMTIMEQKYEGEYRFVNSRLITNSEEIAFYNGNK 286
Query: 308 KEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDT 367
+E+ I F+ L H+ + + G I + KY+ V +++ PF P
Sbjct: 287 REKQTIHSVFRKLVEHLHNFIFFRFSMGFIDSIIAKYIATVVGYLVVSRPFL-DLAHPRH 345
Query: 368 STLGRAKMLSNLRYHTSVIISLFQSLGTXXXXXXXXXXXXGYADRIHELMVISREL---- 423
+++L + +++ + Q+LG G+ RI ELM + ++L
Sbjct: 346 LHSTHSELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGK 405
Query: 424 ------SIEDK-------SPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEP 470
S +DK SP G+ + N I+F V + TP G++L+++L+ +V
Sbjct: 406 YERTMVSQQDKGIEGAQASPLIPGAGEIINADNIIKFDHVPLATPNGDILIQDLSFEVRS 465
Query: 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLR 530
G+N+LI GPNG GKSSLFRVLG LWPL GH+ KP G ++FYVPQRPY +GTLR
Sbjct: 466 GANVLICGPNGCGKSSLFRVLGELWPLFGGHLTKPERG-----KLFYVPQRPYMTLGTLR 520
Query: 531 DQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI-NWGDELSLGEQQRLG 588
DQ+IYP DQ+ + ++ + L NV L ++L+R + +W D LS GE+QR+
Sbjct: 521 DQVIYPDGKEDQKKKGISDQVLKGYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMA 580
Query: 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLD 648
MARLFYHKP+FAILDECTSAV+ D+E+ + R +G + T+SHR +L H+ L +D
Sbjct: 581 MARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHMD 640
Query: 649 GEGEW 653
G G +
Sbjct: 641 GRGNY 645
|
|
| UNIPROTKB|A7Z038 ABCD3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
Identities = 193/564 (34%), Positives = 304/564 (53%)
Query: 108 LALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCF-LLSTMHSTSKY 166
L L+ ++++ + G L + + R F+ N + L+S +++ K+
Sbjct: 86 LILIAVMLVSRTFCDVWMIQNGTLIESGIIGRSRKDFKKYLFNFIAAMPLISLVNNFLKF 145
Query: 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQ 226
L L FR +TK ++ Y + YYK+ ++D RI +P+Q L DV +FC+ + +L
Sbjct: 146 GLNELKLCFRVRLTKYLYEEYLQAFTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLYS 205
Query: 227 DDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEY 286
+ D +LY +RL S + ++AY+L +G + GK+ EQ+LEGEY
Sbjct: 206 NLSKPFLDIVLYIFRLTSAIGAQGPASMMAYLLVSGLFLTRIRRPIGKMTITEQKLEGEY 265
Query: 287 RQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLG 346
R ++SRL T++E +AFY G +E+ I F+ L H+ + + G I + KYL
Sbjct: 266 RYVNSRLITNSEEVAFYNGNKREKQTIHSVFQKLVEHLHNFILFRFSMGFIDSIIAKYLA 325
Query: 347 ATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTXXXXXXXXXXX 406
V +++ PF P +++L + +++ + Q+LG
Sbjct: 326 TVVGYLVVSRPFL-DLAHPRHLKSSHSELLEDYYQSGRMLLRMSQALGRIVLAGREMTRL 384
Query: 407 XGYADRIHELMVISRELSIEDK------SPQRNGSRNY---------FSEANYIEFSGVK 451
G+ RI ELM + ++L+ + K S Q G+++ + N I+F V
Sbjct: 385 AGFTARITELMQVLKDLN-QGKYERTMVSQQEKGAQDIPLIPGIGEIINTDNIIKFDHVP 443
Query: 452 VVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDL 511
+ TP G++L+ +L +V G+N+LI GPNG GKSSLFRVLG LWPL G + KP G
Sbjct: 444 LATPNGDILIRDLNFEVRSGANVLICGPNGCGKSSLFRVLGELWPLFGGRLTKPERG--- 500
Query: 512 NKEIFYVPQRPYTAVGTLRDQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 570
++FYVPQRPY +GTLRDQ+IYP DQ+ + ++ + E L NV L ++L+R
Sbjct: 501 --KLFYVPQRPYMTLGTLRDQVIYPDGKEDQKKKGISDLVLKEYLDNVQLSHILEREGGW 558
Query: 571 KEI-NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCI 629
+ +W D LS GE+QR+ MARLFYHKP+FAILDECTSAV+ D+E+ + R +G +
Sbjct: 559 DSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCREVGITLF 618
Query: 630 TISHRPALVAFHDVVLSLDGEGEW 653
T+SHR +L H+ L +DG G +
Sbjct: 619 TVSHRKSLWKHHEYYLHMDGRGNY 642
|
|
| MGI|MGI:1349216 Abcd3 "ATP-binding cassette, sub-family D (ALD), member 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
Identities = 203/605 (33%), Positives = 320/605 (52%)
Query: 79 NQKKGGLKSLQVLAAILLSEMGK----MGARDLLALVG-IVVLRTALSNR----LAKVQ- 128
N +K G K V+ + LS + + M R G ++++ L +R + +Q
Sbjct: 47 NNEKEGKKERAVVDKVFLSRLSQILKIMVPRTFCKETGYLLLIAVMLVSRTYCDVWMIQN 106
Query: 129 GFLFRAAFLRRVPLFFQLISENILLCF-LLSTMHSTSKYITGTLSLQFRKIVTKLIHTRY 187
G L + + R F+ N + L+S +++ KY L L FR +T+ ++ Y
Sbjct: 107 GTLIESGIIGRSSKDFKRYLFNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTRYLYEEY 166
Query: 188 FENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYAS 247
+ YYK+ ++D RI +P+Q L DV +FC+ + +L + D +LY ++L S
Sbjct: 167 LQAFTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIG 226
Query: 248 PKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGEN 307
+ ++AY+L +G + GK+ EQ+ EGEYR ++SRL T++E IAFY G
Sbjct: 227 AQGPASMMAYLLVSGLFLTRLRRPIGKMTIMEQKYEGEYRYVNSRLITNSEEIAFYNGNK 286
Query: 308 KEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDT 367
+E+ I F+ L H+ + + G I + KY+ V +++ PF P
Sbjct: 287 REKQTIHSVFRKLVEHLHNFIFFRFSMGFIDSIIAKYVATVVGYLVVSRPFL-DLAHPRH 345
Query: 368 STLGRAKMLSNLRYHTSVIISLFQSLGTXXXXXXXXXXXXGYADRIHELMVISREL---- 423
+++L + +++ + Q+LG G+ RI ELM + ++L
Sbjct: 346 LHSTHSELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGR 405
Query: 424 ------SIEDK-------SPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEP 470
S ++K SP G+ + N I+F V + TP G++L+++L+ +V
Sbjct: 406 YERTMVSQQEKGIEGAQASPLVPGAGEIINTDNIIKFDHVPLATPNGDILIQDLSFEVRS 465
Query: 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLR 530
G+N+LI GPNG GKSSLFRVLG LWPL G + KP G ++FYVPQRPY +GTLR
Sbjct: 466 GANVLICGPNGCGKSSLFRVLGELWPLFGGRLTKPERG-----KLFYVPQRPYMTLGTLR 520
Query: 531 DQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI-NWGDELSLGEQQRLG 588
DQ+IYP DQ+ ++ + E L NV L ++L+R + +W D LS GE+QR+
Sbjct: 521 DQVIYPDGKEDQKKRGISDQVLKEYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMA 580
Query: 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLD 648
MARLFYHKP+FAILDECTSAV+ D+E+ + R +G + T+SHR +L H+ L +D
Sbjct: 581 MARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHMD 640
Query: 649 GEGEW 653
G G +
Sbjct: 641 GRGNY 645
|
|
| WB|WBGene00004058 pmp-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
Identities = 190/576 (32%), Positives = 311/576 (53%)
Query: 108 LALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQL-ISENILLCFLLSTMHSTSKY 166
+ ++G V+L +++ A+ + R P+ F + + + L +S +++ K+
Sbjct: 94 MIVIGFVLLARTIADVYMITNATSVEASIVDRSPIMFAMSVFKYFLNLPAISLINALLKF 153
Query: 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQ 226
L L+FR+ +TK ++ +Y YY+IS++D RI +P+Q L DV +FC + EL
Sbjct: 154 SLSELKLRFRENLTKYLYGKYLGGFTYYQISNLDSRIQNPDQLLTQDVEKFCDGIVELYS 213
Query: 227 DDLTAVTDGLLYTWRL---CSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLE 283
+ + D LY ++L + P +F Y++ + ++ KL +EQ LE
Sbjct: 214 NMTKPILDVFLYVFKLGRALGWEGPGLLF---GYLMASMVVLTKLRRPIAKLTVEEQVLE 270
Query: 284 GEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLK 343
GEYR ++SRL ++E IAFY G E+ + F L H+R + + G + + + K
Sbjct: 271 GEYRYVNSRLIMNSEEIAFYQGNKPEKQALMGSFNNLVYHLRKTIMFRFTLGFVDNIVGK 330
Query: 344 YLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTXXXXXXXX 403
Y+ V + + FF N + + R +++ L + +++ L ++LG
Sbjct: 331 YITNIVGWVACAKTFFDVN-NEKFNEMDRNELMQELYNNGRMMLKLSEALGRLALAGRDM 389
Query: 404 XXXXGYADRIHELMVISRELS--------IEDKSPQRN-------GSRNYFSEANYIEFS 448
G+ R+ LM + ++ + D+S + GS ++ N I+F
Sbjct: 390 TRLSGFTTRVDTLMKVLDDMKAGRFEKAQVADESGEEGQRLMLKAGSGKLLAQDNMIKFD 449
Query: 449 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG 508
V +VTP G++L+E+L+ +V G N+L+ GPNG GKSSLFR LG LWP++ G + KP G
Sbjct: 450 EVPLVTPNGDILIESLSFEVPSGRNVLVCGPNGCGKSSLFRTLGELWPVMGGTLTKPAKG 509
Query: 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRY 567
++FYVPQRPY +GTLRDQ+IYP TS D +++ ++ + ++L+NV L +L+R
Sbjct: 510 -----KLFYVPQRPYMTLGTLRDQVIYPDTSFDMKMKGMSDKDLEQMLENVQLTNILERE 564
Query: 568 PPEKEI-NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 626
+ +W D LS GE+QR+ MARLFYHKP+FAILDECTSAV+ D+E R M
Sbjct: 565 GGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGAMYRLCREMNI 624
Query: 627 SCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGS 662
+ T+SHR +L +H+ L +DG G +R D S
Sbjct: 625 TLFTVSHRKSLWKYHEYSLYMDGRGSYRFEQIDDQS 660
|
|
| ZFIN|ZDB-GENE-050517-27 abcd1 "ATP-binding cassette, sub-family D (ALD), member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 538 (194.4 bits), Expect = 1.9e-82, Sum P(2) = 1.9e-82
Identities = 109/225 (48%), Positives = 157/225 (69%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
I+ + ++TPTG+V+V +L ++V+ G +LLITGPNG GKSSLFR+L GLWP+ SG + K
Sbjct: 482 IKCENLPIITPTGDVVVSSLNMQVDEGMHLLITGPNGCGKSSLFRILSGLWPVYSGVLYK 541
Query: 505 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP--LTHGGMVELLKNVDLEY 562
P D +FY+PQRPY +VGTLRDQ+IYP S QE++ +T + E+L+ V L Y
Sbjct: 542 PS--PD---HMFYIPQRPYMSVGTLRDQVIYP-HSVQEMQEKGITDRQLEEILQTVSLRY 595
Query: 563 LLDRYPPEKEIN-WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV 621
+L+R ++ W D LS GE+QR+GMAR+FYHKP++A+LDECTSAV+ D+E +
Sbjct: 596 ILEREGGWDAVSDWKDVLSGGEKQRMGMARMFYHKPQYALLDECTSAVSIDVEGKIFEAA 655
Query: 622 RAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVT 666
+ G S ++I+HRP+L +H +L DGEG WR +K D S+ ++
Sbjct: 656 KDAGISLLSITHRPSLWKYHSHLLQFDGEGGWRF-EKLDASTRIS 699
|
|
| WB|WBGene00004061 pmp-4 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 548 (198.0 bits), Expect = 5.4e-82, Sum P(2) = 5.4e-82
Identities = 107/218 (49%), Positives = 157/218 (72%)
Query: 440 SEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 499
SEA+ I + V +VTP G+V+V+N+TL + PG ++LITGPNG GKSSLFR+LGGLWP+
Sbjct: 463 SEADEIILNSVPIVTPNGDVVVKNMTLTISPGMHVLITGPNGCGKSSLFRILGGLWPVYR 522
Query: 500 GHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNV 558
GH+ KP SD ++Y+PQRPY +GTLRDQ+IYP T+ Q + +T ++ +L+ V
Sbjct: 523 GHLEKPT--SD---RMYYIPQRPYMTLGTLRDQVIYPDTTIQMRRQGITDQDLMTMLRIV 577
Query: 559 DLEYLLDRYPP-EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF 617
LE++++R + + +W D LS GE+QR+GMAR+FYH+PK+A+LDECTSAV+ D+E
Sbjct: 578 HLEHIVEREGGWDAQNDWMDVLSGGEKQRMGMARVFYHRPKYALLDECTSAVSIDVEGSI 637
Query: 618 CAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRV 655
++ G + +T++HRP+L FH +L DGEG ++V
Sbjct: 638 YQAIKDSGITLLTVTHRPSLWKFHTHLLQYDGEGGYKV 675
|
|
| ZFIN|ZDB-GENE-050517-29 abcd3b "ATP-binding cassette, sub-family D (ALD), member 3b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
Identities = 219/656 (33%), Positives = 339/656 (51%)
Query: 25 LLASGILVAGGT--AAY-LKSRFSSKKPD--AFGHYNGLGDSE--RKPDKAVANRSNIKK 77
L A +AG AAY LK R S++ G L D+E RK DKA + ++
Sbjct: 8 LTAGNSSIAGALLFAAYVLKQRLSTETNGYREKGSSKPLRDNEKDRKTDKAAVDNVFFRR 67
Query: 78 ANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFL 137
LK L A E G LL + ++V RT + G + +A +
Sbjct: 68 ICHI---LKILMPQA--FCKESGY-----LLLIAVMLVARTYCDVWMIH-NGTMIESAII 116
Query: 138 RRVPLFFQLISENILLCF-LLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKI 196
R F+ N + +S +++ K L L FR +T ++ Y + YY+I
Sbjct: 117 GRSTTTFKRYLVNFITVMPFISLVNNFLKLGINELKLCFRVRLTNHLYNDYLKGFTYYQI 176
Query: 197 SHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILA 256
++D RI +P+Q + DV +FC+ + +L + + D L+Y ++L + +L
Sbjct: 177 GNLDNRIANPDQLITQDVEKFCNSVVDLYSNVSKPLLDILIYIFKLNTAIGSLGPATLLG 236
Query: 257 YVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQK 316
Y+L +G ++ GK+ EQ+ EGEYR ++SRL T++E IAFY G +E+ I
Sbjct: 237 YLLLSGLLLTRLRRPIGKMTVTEQRYEGEYRYVNSRLITNSEEIAFYNGNLREKQTIIGT 296
Query: 317 FKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF-AGNLKPDTSTLGRAKM 375
F+ L H+ +H + G++ + KY+ V ++I PF N + ST A+
Sbjct: 297 FQKLVDHLSRFIHFRFSMGVMDSIIAKYIAMAVGYLVISRPFLDISNQRHINSTY--AER 354
Query: 376 LSNLRYHTSVIISLFQSLGTXXXXXXXXXXXXGYADRIHELMVISRELS----------- 424
L + +++SL Q+LG G+ RI E+ + +EL+
Sbjct: 355 LEDYYQSGRMLMSLAQALGRIVLAGREMTRLSGFTARITEIQEVLKELNSGKYERTMVTH 414
Query: 425 -IED----KSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGP 479
I+D K P G N I+F + + TP G++L+ +L+ +V G+N+L+ GP
Sbjct: 415 RIKDTAVDKIPLIPGRGEIIIADNKIKFEHIPLATPNGDILISDLSFEVSSGTNVLVCGP 474
Query: 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS 539
NG GKSSLFRVLG LWPL G + KP G ++FYVPQRPY +G+LRDQ+IYP T
Sbjct: 475 NGCGKSSLFRVLGELWPLCGGKLTKPERG-----KLFYVPQRPYMTLGSLRDQVIYPDTL 529
Query: 540 DQEVEPLTHGGMV-ELLKNVDLEYLLDRYPPEKEI-NWGDELSLGEQQRLGMARLFYHKP 597
+ +++ T ++ E L NV L ++L+R + + +W D LS GE+QR+ MARLFYHKP
Sbjct: 530 EDQMKKRTSDRVLKEYLDNVQLGHILEREGSWESVQDWMDVLSGGEKQRMAMARLFYHKP 589
Query: 598 KFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEW 653
+FAILDECTSAV+ D+E+ + R +G + T+SHR +L H+ L +DG G +
Sbjct: 590 QFAILDECTSAVSVDVEDFIYSHCRKVGITLFTVSHRKSLWKHHEYYLHMDGRGNY 645
|
|
| ZFIN|ZDB-GENE-040426-2868 abcd3a "ATP-binding cassette, sub-family D (ALD), member 3a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
Identities = 206/612 (33%), Positives = 324/612 (52%)
Query: 67 KAVANRSNIKKANQK-KGGLKSLQVL--AAILLSEMGKMGARD---LLALVGIVVLRTAL 120
K AN N +K +K + + L + + IL + K +++ LL + ++V RT
Sbjct: 39 KGSANELNSEKDGKKERAAVDKLFFIRISRILKIMVPKFFSKETWYLLLIAVMLVTRTYC 98
Query: 121 SNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTM-HSTSKYITGTLSLQFRKIV 179
+ + G + +A + R F+ N + +S + ++ K L L FR +
Sbjct: 99 DVWMIQ-NGTMIESAIIGRSTKGFKKYLFNFMTAMPISALVNNFLKLGLNELKLCFRVRL 157
Query: 180 TKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYT 239
TK ++ Y + YYK+ ++D RI + +Q L DV RFC+ + +L + + D LY
Sbjct: 158 TKHLYDEYLKGYTYYKMGNLDNRIANADQLLTQDVERFCNSVVDLYSNLSKPLLDIGLYI 217
Query: 240 WRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAES 299
++L + + ++AY+L +G + GK+ EQ+ EGEYR ++SRL T++E
Sbjct: 218 FKLTTAIGAQGPATMMAYLLISGLFLTRLRRPIGKMTVTEQKYEGEYRYVNSRLITNSEE 277
Query: 300 IAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF 359
IAFY G +E+ I FK L H+ + + GM+ + KY V +++ PF
Sbjct: 278 IAFYNGNTREKQTIHSTFKKLVDHLHNFIFFRFSMGMVDSIIAKYFATVVGYLVVSRPFL 337
Query: 360 AGNLKPDTS-TLGRAKMLSNLRYHTSVIISLFQSLGTXXXXXXXXXXXXGYADRIHELMV 418
NL A++L + +++ + Q+LG G+ RI ELM
Sbjct: 338 --NLSHSRHLNSSHAELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLSGFTARITELMR 395
Query: 419 ISREL------------SIEDKSPQRN---GSRNYFSEANYIEFSGVKVVTPTGNVLVEN 463
+ +EL S +D S + GS + N I+F + TP G+VL+ +
Sbjct: 396 VLKELNSGKYERTMVSQSEKDASEKLTLVPGSGRIINIDNIIKFDHTPLATPNGDVLIRD 455
Query: 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523
L +V+ G+N+L+ GPNG GKSSLFRVLG LWPL G++ KP G ++FYVPQRPY
Sbjct: 456 LCFEVKSGTNVLVCGPNGCGKSSLFRVLGELWPLFGGNLTKPERG-----KLFYVPQRPY 510
Query: 524 TAVGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI-NWGDELSL 581
+G+LRDQ+IYP T + Q+ + ++ + E L NV L ++LDR + +W D LS
Sbjct: 511 MTLGSLRDQVIYPDTHESQKKKGISDLVLKEYLDNVQLGHILDREGSWDTVQDWMDVLSG 570
Query: 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFH 641
GE+QR+ MARLFYHKP+FAILDECTSAV+ D+E+ + R +G + T+SHR +L H
Sbjct: 571 GEKQRMAMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHH 630
Query: 642 DVVLSLDGEGEW 653
+ L +DG G +
Sbjct: 631 EYYLHMDGRGNY 642
|
|
| DICTYBASE|DDB_G0293194 abcD2 "ABC transporter D family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 503 (182.1 bits), Expect = 6.1e-81, Sum P(2) = 6.1e-81
Identities = 101/217 (46%), Positives = 142/217 (65%)
Query: 439 FSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV 498
F E ++I+F V +V+P G +LVENL +V P N++ITGPNGSGKSSLFR+LG LWPL
Sbjct: 512 FVEGDFIKFENVSIVSPEGKLLVENLDFQVMPNQNVMITGPNGSGKSSLFRILGELWPLH 571
Query: 499 SGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKN 557
G + KP ++I +VPQ+PY +GTLRDQ+IYP + D + +T + LL
Sbjct: 572 CGTVIKPR-----KEDILFVPQKPYLVLGTLRDQIIYPHSHDDMKKLGVTDDDLQHLLAT 626
Query: 558 VDLEYLLDR-YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
VD + R + + +W LS G++QR+ MARLFYH+P++AILDECTSAV+ ++E +
Sbjct: 627 VDPNLTIIRQWNWDDTKDWFTALSGGQKQRIAMARLFYHRPQYAILDECTSAVSDEVEGK 686
Query: 617 FCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEW 653
+ +G + T+SHRP L A+HD VL +G G W
Sbjct: 687 IYETCKKLGITLFTVSHRPQLRAYHDYVLLFNGRGGW 723
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q94FB9 | AB1D_ARATH | 3, ., 6, ., 3, ., 4, 7 | 0.8060 | 0.9652 | 0.7681 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1064 | |||
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-137 | |
| pfam06472 | 282 | pfam06472, ABC_membrane_2, ABC transporter transme | 6e-96 | |
| pfam06472 | 282 | pfam06472, ABC_membrane_2, ABC transporter transme | 4e-91 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-90 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-76 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-49 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-27 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-25 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-24 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-24 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-22 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 7e-22 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 7e-22 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-21 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 4e-21 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-20 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-20 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-20 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 5e-20 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-20 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 9e-20 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 9e-20 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-19 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 6e-19 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 7e-19 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-18 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-18 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-18 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-18 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-18 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 5e-18 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-17 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-17 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-16 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-16 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-16 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-16 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 6e-16 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-15 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-15 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-15 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-15 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 8e-15 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-14 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-14 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-14 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-14 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 6e-14 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 8e-14 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-13 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-13 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-13 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-13 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-13 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-13 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-13 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-13 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-13 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-13 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-13 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 5e-13 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-13 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 7e-13 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-12 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-12 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-12 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-12 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-12 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-12 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 5e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 8e-12 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-11 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-11 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-11 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-11 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-11 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 5e-11 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 5e-11 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 6e-11 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 9e-11 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-10 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-10 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-10 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-10 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 4e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-10 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 4e-10 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 4e-10 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 5e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 5e-10 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 8e-10 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 9e-10 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 9e-10 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-09 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-09 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-09 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-09 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-09 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-09 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-09 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-09 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-09 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-09 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-09 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-09 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-09 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 4e-09 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 4e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-09 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 5e-09 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-09 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 8e-09 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 9e-09 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-08 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-08 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-08 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-08 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-08 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-08 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-08 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-08 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-08 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 4e-08 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 4e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-08 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 6e-08 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 7e-08 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 7e-08 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 7e-08 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 7e-08 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 8e-08 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 8e-08 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 9e-08 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-07 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-07 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-07 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-07 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-07 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-07 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-07 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-07 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-07 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-07 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-07 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-07 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-07 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 5e-07 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 5e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 7e-07 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 8e-07 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 9e-07 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 9e-07 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 9e-07 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-06 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-06 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-06 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-06 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-06 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-06 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-06 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-06 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 4e-06 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-06 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 6e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 7e-06 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 9e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-05 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-05 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-05 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-05 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-05 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-05 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-05 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-05 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-05 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-05 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-05 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 3e-05 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-05 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-05 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 4e-05 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 6e-05 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-05 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 6e-05 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 6e-05 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 6e-05 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 7e-05 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 7e-05 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 7e-05 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 8e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 8e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-04 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-04 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-04 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-04 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-04 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 4e-04 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-04 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-04 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 6e-04 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 7e-04 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 7e-04 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 8e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 8e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 8e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 9e-04 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 9e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.001 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.001 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.001 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 0.001 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 0.001 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.002 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 0.002 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 0.002 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 0.002 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.002 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.002 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 0.002 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 0.002 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 0.002 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 0.003 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 0.003 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 0.003 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 0.003 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 0.004 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 0.004 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 0.004 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 0.004 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.004 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 428 bits (1103), Expect = e-137
Identities = 212/624 (33%), Positives = 331/624 (53%), Gaps = 51/624 (8%)
Query: 65 PDKAVANRSNIKKANQK--KGG--LKSLQVLAAILL-----SEMGKMGARDLLALVGIV- 114
V S I+ A +K G L L L IL+ E G LL L+ +
Sbjct: 52 ELTIVGKHSTIEGAKKKAHVNGVFLGKLDFLLKILIPRVFCKETG------LLILIAFLL 105
Query: 115 VLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLL-----STMHSTSKYITG 169
V RT LS +A + G + ++ +RR P F I L + L S ++S KY+
Sbjct: 106 VSRTYLSVYVATLDGQI-ESSIVRRSPRNFAWI----LFKWFLIAPPASFINSAIKYLLK 160
Query: 170 TLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDL 229
L L+FR +T+ ++++Y +YK+S++D RI +P+Q L DV +FC + EL +
Sbjct: 161 ELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLT 220
Query: 230 TAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQL 289
+ D +LY+++L + + AY+ G ++ P GKL +EQ LEGEYR +
Sbjct: 221 KPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYV 280
Query: 290 HSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATV 349
HSRL ++E IAFY G E+ + F L H+ +++ + +G + + + KY + V
Sbjct: 281 HSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAV 340
Query: 350 AVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGY 409
++ + P F P + +++ + +++ +LG L ++ R + RL+G+
Sbjct: 341 GLVAVSIPIFDKT-HPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGF 399
Query: 410 ADRIHELMVI-----------SRELSIED------KSPQRNGSRNYFSEANYIEFSGVKV 452
R+ L+ + R IE S G + N I+F + +
Sbjct: 400 TARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPL 459
Query: 453 VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN 512
VTP G+VL+E+L+ +V G+NLLI GPNG GKSSLFR+LG LWP+ G + KP G
Sbjct: 460 VTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGK--- 516
Query: 513 KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP-LTHGGMVELLKNVDLEYLLDRYPPEK 571
+FYVPQRPY +GTLRDQ+IYP +S+ L+ + ++L NV L ++L+R
Sbjct: 517 --LFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWS 574
Query: 572 EI-NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCIT 630
+ +W D LS GE+QR+ MARLFYHKP+FAILDECTSAV+ D+E R G + +
Sbjct: 575 AVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFS 634
Query: 631 ISHRPALVAFHDVVLSLDGEGEWR 654
+SHR +L +H+ +L +DG G ++
Sbjct: 635 VSHRKSLWKYHEYLLYMDGRGGYQ 658
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|219046 pfam06472, ABC_membrane_2, ABC transporter transmembrane region 2 | Back alignment and domain information |
|---|
Score = 305 bits (783), Expect = 6e-96
Identities = 109/275 (39%), Positives = 167/275 (60%)
Query: 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFF 144
L+ L L IL A LLAL ++VLRT LS +A++ G L +A + F
Sbjct: 8 LRRLWRLLKILFPRWFSKEAGLLLALAALLVLRTFLSVLVAQLDGQLVKALVAKNARGFI 67
Query: 145 QLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRIT 204
+L+ + LL S ++S KY+T L+L+FR +T+ +H Y +N YYK+S++DGRI
Sbjct: 68 RLLLKWALLAVPASFVNSALKYLTQKLALRFRTRLTRHLHDEYLKNRTYYKLSNLDGRID 127
Query: 205 HPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTM 264
+P+QR+ DV +FCS S+L + L + D +L+T+ L + + YVL + +
Sbjct: 128 NPDQRITQDVEKFCSSSSDLYSNLLKPILDIILFTFILWRLSGWLGPAILFLYVLLSTVI 187
Query: 265 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324
+R P FGKL+++EQ+LEG++R LHSRL T+AE IAFY GE +E+ +Q++FK+L HM
Sbjct: 188 LRRLGPPFGKLVAEEQRLEGDFRYLHSRLITNAEEIAFYRGEEREKKQLQRRFKSLIDHM 247
Query: 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF 359
R +L W+G I+DF+LKY + + +L P F
Sbjct: 248 RRILRRRLWYGFIEDFVLKYTWSILGYVLCAVPIF 282
|
This domain covers the transmembrane of a small family of ABC transporters and shares sequence similarity with pfam00664. Mutations in this domain in human ABCD3 (PMP70) are believed responsible for Zellweger Syndrome-2; mutations in human ABCD1 (ALD) are responsible for recessive X-linked adrenoleukodystrophy. A Saccharomyces cerevisiae homolog is involved in the import of long-chain fatty acids. Length = 282 |
| >gnl|CDD|219046 pfam06472, ABC_membrane_2, ABC transporter transmembrane region 2 | Back alignment and domain information |
|---|
Score = 292 bits (750), Expect = 4e-91
Identities = 101/273 (36%), Positives = 170/273 (62%)
Query: 741 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRL 800
R+ + K+L P F K+ LLA+A L+V RT++S +A L+G VK ++ ++ F+RL
Sbjct: 10 RLWRLLKILFPRWFSKEAGLLLALAALLVLRTFLSVLVAQLDGQLVKALVAKNARGFIRL 69
Query: 801 IGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDA 860
+ L + +SF+ ++++LT +LAL +R R+T+HL YL+ ++YK+ N+ + +
Sbjct: 70 LLKWALLAVPASFVNSALKYLTQKLALRFRTRLTRHLHDEYLKNRTYYKLSNLDGRIDNP 129
Query: 861 DQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLR 920
DQRIT D+EK + S L + ++KP +DI+ FT+ + L+G G AIL+ Y+LL LR
Sbjct: 130 DQRITQDVEKFCSSSSDLYSNLLKPILDIILFTFILWRLSGWLGPAILFLYVLLSTVILR 189
Query: 921 SVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLL 980
+ P FG L + EQ+LEG FR++H RL +AE +AF+ G REK ++ RF+ L++H
Sbjct: 190 RLGPPFGKLVAEEQRLEGDFRYLHSRLITNAEEIAFYRGEEREKKQLQRRFKSLIDHMRR 249
Query: 981 LLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAM 1013
+L+++ +G ++DFV K + + L +
Sbjct: 250 ILRRRLWYGFIEDFVLKYTWSILGYVLCAVPIF 282
|
This domain covers the transmembrane of a small family of ABC transporters and shares sequence similarity with pfam00664. Mutations in this domain in human ABCD3 (PMP70) are believed responsible for Zellweger Syndrome-2; mutations in human ABCD1 (ALD) are responsible for recessive X-linked adrenoleukodystrophy. A Saccharomyces cerevisiae homolog is involved in the import of long-chain fatty acids. Length = 282 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 301 bits (773), Expect = 3e-90
Identities = 156/591 (26%), Positives = 255/591 (43%), Gaps = 79/591 (13%)
Query: 105 RDLLALVGIVVLRTALSNR----LAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTM 160
+ L+ ++ LS R L G + A R + F+Q + ++ LL +
Sbjct: 43 KRAWLLLIGILALILLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLL 102
Query: 161 HSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR--ITHPEQRLASDVPRFC 218
+ ++ L L++R+ +TK + R+ + YY+++ G I +P+QR+ D+ F
Sbjct: 103 NVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFT 162
Query: 219 SELSELVQDDLTAVTD-------------GLLYTWRLCSYASPKYVFW-ILAYVLGAGTM 264
+L L +V GL +T S+ P Y+ W ++ Y + A +
Sbjct: 163 ETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLL 222
Query: 265 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324
+L + Q+LE ++R R+R +AE+IA Y GE E + +F
Sbjct: 223 THLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRF------- 275
Query: 325 RVVLHDHWWFGMIQDFLLKYLGAT---------VAVILIIEPFFAGNLK-PDTSTLGRA- 373
VL + W + ++ + +++ +F+G + A
Sbjct: 276 DAVLGN-WR--RLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAF 332
Query: 374 -KMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQR 432
++ S+L + I + ++ + RL E ++ + P R
Sbjct: 333 GQVHSSLSW----FIDNYDAIADWRATLLRL----------AEFRQALEAAQMDTEKPAR 378
Query: 433 NGSRNYFSEAN--YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRV 490
G R F + I + + TP G L+ L +V PG LLITG +G+GK+SL R
Sbjct: 379 TGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRA 438
Query: 491 LGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT----SDQEVEPL 546
L GLWP SG I+ P + + ++PQRPY GTLR+ L YP SD E+
Sbjct: 439 LAGLWPWGSGRISMPA-----DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAEL--- 490
Query: 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
V +L V L L +R ++E W LS GEQQRL ARL HKPK+ LDE T
Sbjct: 491 -----VAVLHKVGLGDLAERL--DEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT 543
Query: 607 SAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGEGEWRV 655
SA+ + E+R ++ + I++ HRP L FH L L + +
Sbjct: 544 SALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLDDAGGQN 594
|
Length = 604 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 1e-76
Identities = 90/209 (43%), Positives = 117/209 (55%), Gaps = 43/209 (20%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IE + + TP G VL+++L+ +++PG LLITGP+G+GKSSLFR L GLWP SG I
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 505 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
P ++ ++PQRPY +GTLR+QLIYP
Sbjct: 61 PEGE-----DLLFLPQRPYLPLGTLREQLIYP---------------------------- 87
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM 624
W D LS GEQQRL ARL HKPKF LDE TSA+ + E+R ++ +
Sbjct: 88 ----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL 137
Query: 625 GTSCITISHRPALVAFHDVVLSLDGEGEW 653
G + I++ HRP+L FHD VL LDGEG W
Sbjct: 138 GITVISVGHRPSLWKFHDRVLDLDGEGGW 166
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 1e-49
Identities = 91/272 (33%), Positives = 156/272 (57%), Gaps = 5/272 (1%)
Query: 741 RVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRL 800
++ + K+L+P VF K+ L+ +AFL+VSRT++S +A+L+G ++ + +F +
Sbjct: 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWI 137
Query: 801 IGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDA 860
+ L + +SFI +I++L L L +R+R+T++L YL +FYKV N+ S+ +
Sbjct: 138 LFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNP 197
Query: 861 DQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLR 920
DQ +T D+EK + L + + KP +D++ +++++ G G A L+AY+ L
Sbjct: 198 DQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLT 257
Query: 921 SVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLL 980
+ P G LT EQ LEG +R++H RL ++E +AF+ G EK + S F L+EH L
Sbjct: 258 KLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNL 317
Query: 981 LLKKKWLFGILDDFVTKQLPHNVTWGLSLLYA 1012
++K ++ +G LD+ V K TW L A
Sbjct: 318 IIKFRFSYGFLDNIVAK-----YTWSAVGLVA 344
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-27
Identities = 63/214 (29%), Positives = 93/214 (43%), Gaps = 54/214 (25%)
Query: 445 IEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
IEF V P V ++++L ++PG + I GP+GSGKS+L ++L L+ SG I
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 504 KPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557
GV L K I YVPQ P+ GT+R+ N
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRE-------------------------N 95
Query: 558 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF 617
+ LS G++QR+ +AR P ILDE TSA+ + E
Sbjct: 96 I--------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALI 135
Query: 618 CAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649
+RA+ G + I I+HR + + D ++ LD
Sbjct: 136 LEALRALAKGKTVIVIAHRLSTIRDADRIIVLDD 169
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-25
Identities = 103/437 (23%), Positives = 173/437 (39%), Gaps = 63/437 (14%)
Query: 247 SPKYVFWILAYVLGAGTMMRNFSPAFG---------------KLMSKEQQLEGEYRQLHS 291
VF + ++G+ ++ + S L K ++L R+
Sbjct: 129 VLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALG 188
Query: 292 RLRTHA-ESI-------AFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLK 343
L ES+ AF E ++F+ +R + L+
Sbjct: 189 ELNARLLESLSGIRVIKAFGA-----EDRELKRFEEANEELRRANLRASRLEALLAPLML 243
Query: 344 YLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403
L + V+++ G + +L + + + Y ++ L + L L
Sbjct: 244 LLSSLGTVLVL----ALGGFLVLSGSLTVGALAAFILY----LLRLLTPILQLGEVVSLL 295
Query: 404 NRLSGYADRIHELMVISREL-SIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVE 462
R S A+R+ EL+ E+ D GS IEF V P +++
Sbjct: 296 QRASAAAERLFELLDEEPEVEDPPDPLKDTIGS---------IEFENVSFSYPGKKPVLK 346
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516
+++ +EPG + I GP+GSGKS+L ++L L+ SG I G+ L K I
Sbjct: 347 DISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406
Query: 517 YVPQRPYTAVGTLRDQLIY--PLTSDQEVEP-LTHGGMVELLKNVDLEYLLDRYPPEKEI 573
V Q P GT+R+ + P +D+E+E L E + N L D E+
Sbjct: 407 IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIAN--LPDGYDTIVGER-- 462
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITI 631
G LS G++QRL +AR P ILDE TSA+ T+ E ++ + G + + I
Sbjct: 463 --GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLII 520
Query: 632 SHRPALVAFHDVVLSLD 648
+HR + + D ++ LD
Sbjct: 521 AHRLSTIKNADRIIVLD 537
|
Length = 567 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 18/217 (8%)
Query: 445 IEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
IEF V P ++N++L + G + I G GSGKS+L ++L GL+ SG +
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLI--YPLTSDQEV-EPLTHGGMVEL 554
G +DL + I YVPQ GTLRD + PL D+ + G+ +
Sbjct: 63 LDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDF 122
Query: 555 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
+ D E+ G LS G++Q + +AR + P +LDE TSA+ + E
Sbjct: 123 VNKHPNGL--DLQIGER----GRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176
Query: 615 ERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649
ER ++R + + I I+HRP+L+ D ++ +D
Sbjct: 177 ERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDS 213
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 4e-24
Identities = 80/281 (28%), Positives = 129/281 (45%), Gaps = 29/281 (10%)
Query: 392 SLGTL----SISSR---RLNRLSGYADRIHELMVISREL-SIEDKSPQRNGSRNYFSEAN 443
+LG L ++ + RLS + V L I D P++ G +
Sbjct: 408 TLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPK 467
Query: 444 ---YIEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 499
IEF V P ++E+L+L++ PG + I G +GSGKS+L ++L GL+
Sbjct: 468 LQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ 527
Query: 500 GHIAKPGVG-SDLNKE-----IFYVPQRPYTAVGTLRDQLI--YPLTSDQEV-EPLTHGG 550
G I GV +D++ + YV Q P+ G++R+ + P +D+E+ E G
Sbjct: 528 GRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAG 587
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
E ++N+ + Y D E N LS G++QRL +AR KPK +LDE TSA+
Sbjct: 588 AHEFIENLPMGY--DTPVGEGGAN----LSGGQRQRLALARALLSKPKILLLDEATSALD 641
Query: 611 TDMEERFCAKVRAMGTSC--ITISHRPALVAFHDVVLSLDG 649
+ E + + I I+HR + + D ++ LD
Sbjct: 642 PETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQ 682
|
Length = 709 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 2e-22
Identities = 56/213 (26%), Positives = 89/213 (41%), Gaps = 55/213 (25%)
Query: 445 IEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
+E V P ++ N++ +EPG +L I GP+GSGKS+L R++ GL SG +
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557
G ++L + Y+PQ G++ + N
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAE-------------------------N 95
Query: 558 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF 617
+ LS G++QRLG+AR Y P+ +LDE S + + E
Sbjct: 96 I--------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERAL 135
Query: 618 CAKVRAM---GTSCITISHRPALVAFHDVVLSL 647
+ A+ G + I I+HRP +A D +L L
Sbjct: 136 NQAIAALKAAGATRIVIAHRPETLASADRILVL 168
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 7e-22
Identities = 69/214 (32%), Positives = 102/214 (47%), Gaps = 17/214 (7%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+EFSGV V P + ++ V PG + + GP+G+GKS+L +L G G IA
Sbjct: 322 LEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAV 381
Query: 505 PGVG------SDLNKEIFYVPQRPYTAVGTLRD--QLIYPLTSDQEV-EPLTHGGMVELL 555
GV +I +VPQ P+ GT+ + +L P SD E+ E L G+ E +
Sbjct: 382 NGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFV 441
Query: 556 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
L LD E G LS G+ QRL +AR F +LDE T+ + + E
Sbjct: 442 A--ALPQGLDTPIGEG----GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEA 495
Query: 616 RFCAKVRAM--GTSCITISHRPALVAFHDVVLSL 647
+RA+ G + + ++HR AL A D ++ L
Sbjct: 496 EVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 7e-22
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 21/218 (9%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IEF V +++++ ++PG + I GP G+GK++L +L + G I
Sbjct: 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62
Query: 505 PGV-GSDLNKE-----IFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLK 556
G+ D++++ I V Q + GT+ + + P +D+EV E K
Sbjct: 63 DGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVI--------EAAK 114
Query: 557 NVDLEYLLDRYPP--EKEIN-WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
+ + P + + G LS GE+Q L +AR PK ILDE TS + T+
Sbjct: 115 EAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTET 174
Query: 614 EERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649
E+ + + G + I I+HR + + D +L LD
Sbjct: 175 EKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDD 212
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-21
Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 24/241 (9%)
Query: 424 SIEDKSPQRNGSRNYFSEANY----IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGP 479
++ + GS AN I + P G + +L L ++ G + G
Sbjct: 296 TLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGA 355
Query: 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSDLNKEIFYVPQRPYTAVGTLRDQL 533
+G+GKS+L +L G G I G+ K+I +V Q PY GT+R+ +
Sbjct: 356 SGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENI 415
Query: 534 IY--PLTSDQEV-EPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGM 589
+ P SD+E+ L G++E + D L+ ++ G LS G+ QRL +
Sbjct: 416 LLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEG--------GAGLSGGQAQRLAL 467
Query: 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSL 647
AR +LDE T+ + + E+ ++ + + + I+HR A D ++ L
Sbjct: 468 ARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVL 527
Query: 648 D 648
D
Sbjct: 528 D 528
|
Length = 559 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 4e-21
Identities = 46/202 (22%), Positives = 82/202 (40%), Gaps = 16/202 (7%)
Query: 791 EQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKV 850
+D A+F + + V + + + + L L L WR +T+ LL +L +Y++
Sbjct: 79 RRDLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRL 138
Query: 851 -FNMSSKSID-ADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFT---W----RMKALTG 901
ID DQRI D+ T L G+++ + ++ FT W + G
Sbjct: 139 AQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIG 198
Query: 902 QRGVAI-------LYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESV 954
I + Y + + L Q+LE FR+ R+R +AE++
Sbjct: 199 GFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAI 258
Query: 955 AFFGGGAREKAMIESRFRELLE 976
A + G E+ ++ RF +L
Sbjct: 259 ALYRGEKVERRRLDDRFDAVLG 280
|
Length = 604 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 1e-20
Identities = 65/234 (27%), Positives = 102/234 (43%), Gaps = 45/234 (19%)
Query: 445 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
IE + G V+ ++L +E G + I GP+GSGKS+L +LGGL SG
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 502 IAKPGV----------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGG 550
+ G + + I +V Q L+ LT+ + VE PL G
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFN---------LLPDLTALENVELPLLLAG 111
Query: 551 MV---------ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601
+ ELL+ V L L+ YP ELS G+QQR+ +AR + PK +
Sbjct: 112 VPKKERRERAEELLERVGLGDRLNHYP--------SELSGGQQQRVAIARALANDPKIIL 163
Query: 602 LDECTSAVTTDMEER----FCAKVRAMGTSCITISHRPALVAFHDVVLSL-DGE 650
DE T + ++ + + GT+ + ++H P L + D ++ L DG+
Sbjct: 164 ADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGK 217
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 3e-20
Identities = 62/200 (31%), Positives = 90/200 (45%), Gaps = 23/200 (11%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516
N L + G + I G +GSGKS+L ++L G W G I GV L + I
Sbjct: 356 NFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415
Query: 517 YVPQRPYTAVGTLRD--QLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 574
+ QR + GTLRD +L P SD+E + L+ V LE LL P+
Sbjct: 416 VLTQRVHLFSGTLRDNLRLANPDASDEE--------LWAALQQVGLEKLL-ESAPDGLNT 466
Query: 575 WGDE----LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSC 628
W E LS GE++RL +AR H +LDE T + E + A + G +
Sbjct: 467 WLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTL 526
Query: 629 ITISHRPALVAFHDVVLSLD 648
+ ++HR + D ++ LD
Sbjct: 527 LMVTHRLRGLERMDRIIVLD 546
|
Length = 573 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 4e-20
Identities = 69/218 (31%), Positives = 106/218 (48%), Gaps = 20/218 (9%)
Query: 445 IEFSGVKVVTP--TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
IEF V P L +N++L + PG + I G GSGKS+L ++L GL+ G +
Sbjct: 464 IEFRNVSFAYPGQETPAL-DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV 522
Query: 503 AKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEV-EPLTHGGMVE 553
GV +DL + I YVPQ P GTLRD + P D+E+ G+ E
Sbjct: 523 LLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTE 582
Query: 554 LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
++ LD E+ G LS G++Q + +AR P +LDE TSA+
Sbjct: 583 FVRR--HPDGLDMQIGER----GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636
Query: 614 EERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649
EERF +++ G + + ++HR +L+ D ++ +D
Sbjct: 637 EERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDN 674
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 5e-20
Identities = 63/214 (29%), Positives = 94/214 (43%), Gaps = 36/214 (16%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEI 515
G+ ++E+++ +V+PG L I GPNG+GKS+L + + GL SG I G K I
Sbjct: 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI 70
Query: 516 FYVPQR-------PYTA--------VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL 560
YVPQR P + G +V+ E L+ V L
Sbjct: 71 GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVD--------EALERVGL 122
Query: 561 EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF--- 617
L DR +I ELS G+QQR+ +AR P +LDE + V +E
Sbjct: 123 SELADR-----QI---GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYEL 174
Query: 618 CAKVRAMGTSCITISHRPALV-AFHDVVLSLDGE 650
++R G + + ++H LV + D VL L+
Sbjct: 175 LRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 8e-20
Identities = 69/220 (31%), Positives = 98/220 (44%), Gaps = 49/220 (22%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI--------AKPGVGSDLN 512
V++++ + G L + G +GSGKS+L R+L GL P SG I G L
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 513 KEIFYVPQRPYTA---VGTLRDQLIYPLTSDQEVEPLTHGG-----MVELLKNVDL-EYL 563
+ I V Q PY++ T+ D L PL + G + ELL+ V L
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEPL----RIHGGGSGAERRARVAELLELVGLPPEF 422
Query: 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--VTT---------D 612
LDRYP ELS G++QR+ +AR +PK ILDE SA V+ D
Sbjct: 423 LDRYP--------HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD 474
Query: 613 MEERFCAKVRAMGTSCITISHRPALVAF--HDVVLSLDGE 650
++E G + + ISH A+V + V + DG
Sbjct: 475 LQEEL-------GLTYLFISHDLAVVRYIADRVAVMYDGR 507
|
Length = 539 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 9e-20
Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 38/215 (17%)
Query: 446 EFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
E + P G ++++L ++ G +LI GPNGSGKS+L R+L GL SG +
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 505 PGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGM------ 551
G +L +++ V Q P DQ P T ++EV L + G+
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNP-------DDQFFGP-TVEEEVAFGLENLGLPEEEIE 112
Query: 552 ---VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
E L+ V LE L DR P LS G++QR+ +A + P +LDE T+
Sbjct: 113 ERVEEALELVGLEGLRDRSP--------FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAG 164
Query: 609 V----TTDMEERFCAKVRAMGTSCITISHRPALVA 639
+ ++ E K++A G + I ++H L+
Sbjct: 165 LDPAGRRELLELL-KKLKAEGKTIIIVTHDLDLLL 198
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 9e-20
Identities = 62/225 (27%), Positives = 98/225 (43%), Gaps = 44/225 (19%)
Query: 445 IEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
+E + V PTG +++++ ++ G L + G +GSGKS+L R + GL SG
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 502 I---------AKPGVGSDLNKEIFYVPQRPYTAVG---TLRDQLIYPLTS--DQEVEPLT 547
I + KEI V Q P +++ T+ +Q+ PL +
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR 121
Query: 548 HGGMVELLKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
++ LL V L E +L+RYP ELS G++QR+ +AR PK I DE T
Sbjct: 122 KEAVLLLLVGVGLPEEVLNRYP--------HELSGGQRQRVAIARALALNPKLLIADEPT 173
Query: 607 SA--VTT---------DMEERFCAKVRAMGTSCITISHRPALVAF 640
SA V+ ++E G + + I+H +VA
Sbjct: 174 SALDVSVQAQILDLLKKLQEEL-------GLTLLFITHDLGVVAK 211
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 1e-19
Identities = 62/232 (26%), Positives = 98/232 (42%), Gaps = 45/232 (19%)
Query: 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI- 502
IE + V+ ++E+++L VE G + GPNG+GKS+L + + GL SG I
Sbjct: 4 MIEVENL-TVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 503 --AKPGVGSDLNKEIFYVPQR------------------PYTAVGTLRDQLIYPLTSDQE 542
KP I YVPQ+ Y G R ++
Sbjct: 63 IFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR---RLNKKDKEK 119
Query: 543 VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602
V+ E L+ V +E L DR +I ELS G++QR+ +AR P +L
Sbjct: 120 VD--------EALERVGMEDLRDR-----QI---GELSGGQKQRVLLARALAQNPDLLLL 163
Query: 603 DECTSAVTTDMEERFCA---KVRAMGTSCITISHRPALV-AFHDVVLSLDGE 650
DE + V ++ ++R G + + ++H LV A+ D V+ L+
Sbjct: 164 DEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.5 bits (214), Expect = 6e-19
Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 19/162 (11%)
Query: 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKE 514
++ N++L V G + ITGP+G GKS+L +++ L SG + G S L E
Sbjct: 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPE 73
Query: 515 IF-----YVPQRPYTAVGTLRDQLIYP-LTSDQEVEPLTHGGMVELLKNVDL-EYLLDRY 567
+ Y Q P T+ D LI+P ++ + ++LL L + +L
Sbjct: 74 AYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDR---AAALDLLARFALPDSILT-- 128
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
K I ELS GE+QR+ + R PK +LDE TSA+
Sbjct: 129 ---KNI---TELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164
|
Length = 223 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 7e-19
Identities = 64/206 (31%), Positives = 94/206 (45%), Gaps = 45/206 (21%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-------AKPGVGSDLN 512
+ N++L++E G L I G +GSGKS+L R+L GL SG I A
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81
Query: 513 KEIFYVPQRPYTAVGTLR--DQLIYPLTSDQEVEPLTHGGM-------VELLKNVDL-EY 562
+ + V Q PY+++ R +++ EPL G+ ELL V L
Sbjct: 82 RPVQMVFQDPYSSLNPRRTVGRILS--------EPLRPHGLSKSQQRIAELLDQVGLPPS 133
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV- 621
LDR P ELS G++QR+ +AR +PK ILDE TSA+ ++ A++
Sbjct: 134 FLDRRP--------HELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQ----AQIL 181
Query: 622 -------RAMGTSCITISHRPALVAF 640
+ G + + ISH ALV
Sbjct: 182 NLLLELKKERGLTYLFISHDLALVEH 207
|
Length = 252 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 2e-18
Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 43/238 (18%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D 510
G ++++L+ + G I GPNGSGKS+L + L GL SG + G +
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE 73
Query: 511 LNKEIFYVPQRPYTAVG-TLRD---------QLIYPLTSDQEVEPLTHGGMVELLKNVDL 560
L K++ YVPQ P G T+ + ++ S ++ E + E L+ + L
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE-----IVEEALELLGL 128
Query: 561 EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME------ 614
E+L DR DELS GE+QR+ +AR + +LDE TS + D+
Sbjct: 129 EHLADRP-------V-DELSGGERQRVLIARALAQETPILLLDEPTSHL--DIAHQIEVL 178
Query: 615 ERFCAKVRAMGTSCITISHRPALVAF--HDVVLSLDGEGEWRVHDKRDGSSVVTKSGI 670
E R G + + + H L A ++L DG ++ + V+T+ +
Sbjct: 179 ELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDG----KIVAQGTPEEVLTEENL 232
|
Length = 258 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 3e-18
Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 20/219 (9%)
Query: 445 IEFSGVKVVTPTGN-VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
+ V +V P G + ++ ++ G L I GP+GSGKS+L R++ G+WP SG +
Sbjct: 317 LSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY---PLTSDQEVEPLTHGGMVEL 554
G K I Y+PQ GT+ + + ++ +E G+ EL
Sbjct: 377 LDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHEL 436
Query: 555 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
+ + Y D G LS G++QR+ +AR Y PK +LDE S + + E
Sbjct: 437 ILRLPDGY--DTVIGPG----GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGE 490
Query: 615 ERFCA---KVRAMGTSCITISHRPALVAFHDVVLSL-DG 649
+ ++A G + + I+HRP+L+ D +L L DG
Sbjct: 491 QALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDG 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 4e-18
Identities = 59/235 (25%), Positives = 91/235 (38%), Gaps = 45/235 (19%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA- 503
IE V V G ++ +L+ +V PG + I GPNG+GK++L +L G P SG +
Sbjct: 32 IELKNV-SVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTL 90
Query: 504 ------KPGVGSDLNKEIFYVP------QRPYTAVGTLRDQL---------IYPLTSDQE 542
K +L K I V R V RD + IY E
Sbjct: 91 LGRRFGKGETIFELRKRIGLVSSELHERFRVRETV---RDVVLSGFFASIGIYQEDLTAE 147
Query: 543 VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602
LL+ + ++L DR +G LS GEQ+R+ +AR P+ IL
Sbjct: 148 DL----AAAQWLLELLGAKHLADRP-------FGS-LSQGEQRRVLIARALVKDPELLIL 195
Query: 603 DECTSAVTTDMEERFCAKV-----RAMGTSCITISHRP--ALVAFHDVVLSLDGE 650
DE + E+ ++ + + ++H F +L +GE
Sbjct: 196 DEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 4e-18
Identities = 61/265 (23%), Positives = 109/265 (41%), Gaps = 33/265 (12%)
Query: 388 SLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGS----RNYFSEAN 443
+ F++ L ++++L R+ A+RI E+ ++ P GS
Sbjct: 282 AAFEAFAALPAAAQQLTRVRAAAERIVEV--------LDAAGPVAEGSAPAAGAVGLGKP 333
Query: 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
+E + P +++ ++L + PG + I GP+GSGKS+L L GL + G +
Sbjct: 334 TLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVT 393
Query: 504 KPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELL 555
GV ++ + + Q + T+R+ L P +D+E+ L
Sbjct: 394 LDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELW--------AAL 445
Query: 556 KNVDLEYLLDRYPPEKEINWGDE---LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612
+ V L L P + G+ LS GE+QRL +AR +LDE T + +
Sbjct: 446 ERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAE 505
Query: 613 MEERFCAKVRAM--GTSCITISHRP 635
+ + A G + + I+H
Sbjct: 506 TADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 4e-18
Identities = 66/228 (28%), Positives = 103/228 (45%), Gaps = 32/228 (14%)
Query: 445 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
IE V + G VE ++ L++E G + I GP+GSGKS+L +LGGL SG
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 502 IAKPGV-GSDLN---------KEIFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLT 547
+ G + L+ K+I +V Q P T+ + + PL +
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD---LTVLENVELPLLIAGKSAGRR 118
Query: 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
ELL+ + LE L + P ELS G+QQR+ +AR + PK + DE T
Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPS-------ELSGGQQQRVAIARALINNPKIILADEPTG 171
Query: 608 AVTTDMEERFCAKVRAM----GTSCITISHRPALVAFHDVVLSL-DGE 650
+ + + +R + G + I ++H P L + D V+ L DG+
Sbjct: 172 NLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 5e-18
Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 28/178 (15%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IE + ++ ++ +VEPG + GPNG+GK++L ++L GL SG I
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64
Query: 505 PGVGSDLNKE-------IFYVPQRPY-----TAVGTLRDQL-IYPLTSDQEVEPLTHGGM 551
G D+ KE I YVPQ P T L +Y L+ ++ E +
Sbjct: 65 LGY--DVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIE---- 118
Query: 552 VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
ELL+ LE ++ LS G +QRL +A H P+ ILDE TS +
Sbjct: 119 -ELLELFGLEDKANKKV--------RTLSGGMKQRLSIALALLHDPELLILDEPTSGL 167
|
Length = 293 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 1e-17
Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 28/195 (14%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKPGVGSDLNK 513
G ++++L+L + G + +TG NG+GK++L ++L GL SG I KP + K
Sbjct: 12 GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRK 71
Query: 514 EIFYVPQRPYTAVG--TLRDQLIY--PLTSD--QEVEPLTHGGMVELLKNVDLEYLLDRY 567
I YV Q + ++R++L+ ++ E +LK++DL L +R+
Sbjct: 72 SIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAE--------TVLKDLDLYALKERH 123
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AM 624
P LS G++QRL +A I DE TS + ER +R A
Sbjct: 124 P--------LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175
Query: 625 GTSCITISHRPALVA 639
G + I I+H +A
Sbjct: 176 GKAVIVITHDYEFLA 190
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-17
Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 30/222 (13%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-- 502
IE + P +++++L++E G +L+ GPNGSGKS+L ++L GL SG +
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63
Query: 503 -----AKPGVGSDLNKEIFYVPQRPYT--AVGTLRDQLIYPLT----SDQEVEPLTHGGM 551
+ +L +++ V Q P T+ D++ + L +E+E
Sbjct: 64 DGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVA--- 120
Query: 552 VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTT 611
E L+ V LE LLDR P LS G++QR+ +A + P+ +LDE T+ +
Sbjct: 121 -EALELVGLEELLDRPP--------FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDP 171
Query: 612 DMEERFCAKVRAM----GTSCITISHRPALVAFH-DVVLSLD 648
++ + G + I ++H LV + D V+ LD
Sbjct: 172 KGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLD 213
|
Length = 235 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 1e-16
Identities = 69/215 (32%), Positives = 103/215 (47%), Gaps = 17/215 (7%)
Query: 445 IEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
IEF V + P +++N++ ++PG + I G GSGKSSL L L L SG I
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQL-IYPLTSDQEV-EPLTHGGMVELL 555
GV DL I +PQ P GT+R L + SD+E+ + L G+ E +
Sbjct: 63 IDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFV 122
Query: 556 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
++ L LD G+ LS+G++Q L +AR K K +LDE T++V + +
Sbjct: 123 ES--LPGGLD----TVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176
Query: 616 RFCAKVRAMGTSC--ITISHRPALVAFHDVVLSLD 648
+R C +TI+HR + D +L LD
Sbjct: 177 LIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLD 211
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 1e-16
Identities = 73/261 (27%), Positives = 114/261 (43%), Gaps = 44/261 (16%)
Query: 390 FQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSG 449
FQ LG I+S A RI+E+ E++ S + + +
Sbjct: 301 FQHLGQ-VIAS---------ARRINEITEQKPEVTFPTTSTAAADQVS-------LTLNN 343
Query: 450 VKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG 508
V P V + L+L+++ G + + G G GKS+L ++L W G I G
Sbjct: 344 VSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP 403
Query: 509 ------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKNVDL 560
+ L + I V QR + TLRD L+ P SD+ ++E+L+ V L
Sbjct: 404 IADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEA--------LIEVLQQVGL 455
Query: 561 EYLLDRYPPEKEIN-W----GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
E LL+ +K +N W G +LS GEQ+RLG+AR H +LDE T + + E
Sbjct: 456 EKLLED---DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETER 512
Query: 616 RFCAKVR--AMGTSCITISHR 634
+ + A + + I+HR
Sbjct: 513 QILELLAEHAQNKTVLMITHR 533
|
Length = 574 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 78.6 bits (195), Expect = 1e-16
Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 55/195 (28%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSD 510
G ++++L+L +E G + I GPNG+GKS+L + L GL SG I G +
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE 70
Query: 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 570
L ++I YVPQ L+ + L +L DR
Sbjct: 71 LARKIAYVPQ---------------------------------ALELLGLAHLADRPF-- 95
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME------ERFCAKVRAM 624
+ELS GE+QR+ +AR +P +LDE TS + D+ E R
Sbjct: 96 ------NELSGGERQRVLLARALAQEPPILLLDEPTSHL--DIAHQIELLELLRRLARER 147
Query: 625 GTSCITISHRPALVA 639
G + + + H L A
Sbjct: 148 GKTVVMVLHDLNLAA 162
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 3e-16
Identities = 66/203 (32%), Positives = 100/203 (49%), Gaps = 26/203 (12%)
Query: 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
N IEF V + G +++++++K E G+ I GP+G+GKS+L +++ L G I
Sbjct: 2 NEIEFKEVSY-SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 503 AKPGVGS------DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 556
GV DL ++I V Q+P+ GT++D + Y G M++ K
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEY-------------GPMLKGEK 107
Query: 557 NVDLEYLLDRYPPEKEINWGD--ELSLGEQQRLGMARLFYHKPKFAILDECTSAV----T 610
NVD+EY L KE D LS GE QR+ +AR + P+ +LDE TSA+ T
Sbjct: 108 NVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTST 167
Query: 611 TDMEERFCAKVRAMGTSCITISH 633
+EE M + I I+H
Sbjct: 168 EIIEELIVKLKNKMNLTVIWITH 190
|
Length = 241 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 6e-16
Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 18/207 (8%)
Query: 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------ 508
+++ ++ ++ G L I GP+GSGKS+L R+L G+WP SG + G
Sbjct: 346 GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDR 405
Query: 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 568
L + I Y+PQ GT+ + I + + E ++E + + L+ R P
Sbjct: 406 EQLGRHIGYLPQDVELFDGTIA-ENIARFGEEADPE-----KVIEAARLAGVHELILRLP 459
Query: 569 PEKEINWGDE---LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME---ERFCAKVR 622
+ G+ LS G++QR+ +AR Y P +LDE S + ++ E +
Sbjct: 460 QGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK 519
Query: 623 AMGTSCITISHRPALVAFHDVVLSLDG 649
A G + + I+HRP+ +A D +L L
Sbjct: 520 ARGGTVVVIAHRPSALASVDKILVLQD 546
|
Length = 580 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 1e-15
Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 26/210 (12%)
Query: 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKPGVGSD- 510
P VL ++++ + PG + GP+GSGKS++ +L + G + KP +
Sbjct: 25 PDTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEH 83
Query: 511 --LNKEIFYVPQRPYTAVGTLRDQLIYPLT--SDQEVEPL-----THGGMVELLKNVDLE 561
L+ ++ V Q P +L+D + Y L S + V+ H + EL D E
Sbjct: 84 KYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTE 143
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV 621
EK G +LS G++QR+ +AR P+ ILDE TSA+ + E++ +
Sbjct: 144 V------GEK----GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQAL 193
Query: 622 RA--MGTSCITISHRPALVAFHDVVLSLDG 649
+ + I+HR + V D +L LDG
Sbjct: 194 YDWPERRTVLVIAHRLSTVERADQILVLDG 223
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 3e-15
Identities = 71/233 (30%), Positives = 99/233 (42%), Gaps = 57/233 (24%)
Query: 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP----L 497
+E + V T V +++ +VEPG L I G +GSGKS+L L GL P +
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 498 VSGHIAKPGVG-SDLN---------KEIFYVPQRPYTA---VGTLRDQLIYPLTSDQEVE 544
SG + G L+ K I + Q P T+ V T+ DQ+ E
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR-------EA- 117
Query: 545 PLTHGGM---------VELLKNVDLEY--LLDRYPPEKEINWGDELSLGEQQRLGMARLF 593
HG VELL+ V L DRYP +LS G +QR+ +A
Sbjct: 118 LRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPH--------QLSGGMRQRVMIAMAL 169
Query: 594 YHKPKFAILDECTSA--VTT-----DMEERFCAKVRAMGTSCITISHRPALVA 639
KPK I DE T+A VTT D+ + R +G + + I+H +VA
Sbjct: 170 ALKPKLLIADEPTTALDVTTQAQILDLLKDLQ---RELGMAVLFITHDLGVVA 219
|
Length = 539 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 3e-15
Identities = 54/212 (25%), Positives = 89/212 (41%), Gaps = 43/212 (20%)
Query: 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEI 515
+ ++++ L+V G + I GP GSGKSSL L G +SG ++ + I
Sbjct: 16 ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVS-------VPGSI 68
Query: 516 FYVPQRPYTAVGTLRDQLIYPLTSDQE--------------VEPLTHGGMVELLKNVDLE 561
YV Q P+ GT+R+ +++ D+E +E L G + E+
Sbjct: 69 AYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEI------- 121
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV 621
EK IN LS G++QR+ +AR Y +LD+ SAV +
Sbjct: 122 -------GEKGIN----LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENC 170
Query: 622 ----RAMGTSCITISHRPALVAFHDVVLSLDG 649
+ I ++H+ L+ D ++ LD
Sbjct: 171 ILGLLLNNKTRILVTHQLQLLPHADQIVVLDN 202
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 3e-15
Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 21/217 (9%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IEF V G ++++++ + G + I GP+GSGKS++ R+L + + SG I
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 505 PGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLK 556
G L + I VPQ T+ + Y P +D+EV E K
Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVI--------EAAK 112
Query: 557 NVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
+ + R+P + G+ +LS GE+QR+ +AR P +LDE TSA+ T
Sbjct: 113 AAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172
Query: 614 EERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
E A +R + G + I I+HR + + D ++ L
Sbjct: 173 EREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLK 209
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 8e-15
Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 19/203 (9%)
Query: 445 IEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
IEF V P+ +++ L+L + PG + + G +G GKS++ +L + SG I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 503 AKPGVG-SDLN-----KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 556
GV DLN +I V Q P GT+ + + Y + E + E K
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEE------VEEAAK 114
Query: 557 NVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
++ + P + G+ +LS G++QR+ +AR PK +LDE TSA+ +
Sbjct: 115 KANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174
Query: 614 EERFCAKV-RAM-GTSCITISHR 634
E+ + RAM G + I I+HR
Sbjct: 175 EKLVQEALDRAMKGRTTIVIAHR 197
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 35/198 (17%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
+++L+L VEPG L + GP+G GK++L R++ GL SG I G +++
Sbjct: 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDG------RDVT 65
Query: 517 YVP--QRPYTAVG------------TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 562
VP +R +G T+ + + + L + + ELL+ V LE
Sbjct: 66 GVPPERRN---IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG 122
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 622
LL+RYP ELS G+QQR+ +AR +P +LDE SA+ + E +++
Sbjct: 123 LLNRYP--------HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELK 174
Query: 623 AM----GTSCITISHRPA 636
+ G + I ++H
Sbjct: 175 ELQRELGITTIYVTHDQE 192
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 1e-14
Identities = 57/217 (26%), Positives = 102/217 (47%), Gaps = 18/217 (8%)
Query: 445 IEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
I F V+ P G V+++N++L+++PG + I G +GSGKS+L +++ + +G +
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQ--LIYPLTSDQEVEPLTH-GGMVEL 554
G + L +++ V Q ++RD L P S + V G +
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120
Query: 555 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
+ + Y D E+ G LS G++QR+ +AR H P+ I DE TSA+ + E
Sbjct: 121 ISELPEGY--DTIVGEQ----GAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 615 ERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649
+ + G + I I+HR + V D ++ ++
Sbjct: 175 HAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEK 211
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 28/177 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G VL L+ + G L++TGPNGSGK++L R++ GL P +G I G D
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD--- 70
Query: 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPL--------THGGMV-ELLKNVDLEYLLDRY 567
Y +G R+ + LT E L + L+ V L L
Sbjct: 71 VAEACHY--LGH-RNAMKPALTV---AENLEFWAAFLGGEELDIAAALEAVGLAPLAHL- 123
Query: 568 PPEKEINWGDELSLGEQQRLGMARLF-YHKPKFAILDECTSAVTTDMEERFCAKVRA 623
P LS G+++R+ +ARL ++P + ILDE T+A+ F +RA
Sbjct: 124 -PFG------YLSAGQKRRVALARLLVSNRPIW-ILDEPTAALDAAAVALFAELIRA 172
|
Length = 207 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 3e-14
Identities = 47/175 (26%), Positives = 70/175 (40%), Gaps = 33/175 (18%)
Query: 445 IEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
+E V G +E+++L VE G + + GP+G GKS+L R++ GL SG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 502 IA---KPGVGSDLNKEIFYVPQRPY-----TAVGTLRDQLIYPLT----SDQEVEPLTHG 549
+ +P G + YV Q+ T D + L E
Sbjct: 61 VLVDGEPVTGP--GPDRGYVFQQDALLPWLTV----LDNVALGLELQGVPKAEARERAE- 113
Query: 550 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
ELL+ V L + YP +LS G +QR+ +AR P +LDE
Sbjct: 114 ---ELLELVGLSGFENAYP--------HQLSGGMRQRVALARALAVDPDVLLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 4e-14
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 35/194 (18%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VS 499
IE + V + L ++++L + G + GP+G GKS+L R+L L L
Sbjct: 1 IELRDLNVYYGDKHAL-KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59
Query: 500 GHI--------AKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT-----SDQEVEPL 546
G + +L + + V Q+P G++ D + Y L +E++
Sbjct: 60 GEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDER 119
Query: 547 THGGMVELLKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605
+ E L+ L + + DR LS G+QQRL +AR ++P+ +LDE
Sbjct: 120 ----VEEALRKAALWDEVKDRLH-------ALGLSGGQQQRLCLARALANEPEVLLLDEP 168
Query: 606 TSAV----TTDMEE 615
TSA+ T +EE
Sbjct: 169 TSALDPISTAKIEE 182
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 6e-14
Identities = 72/269 (26%), Positives = 117/269 (43%), Gaps = 38/269 (14%)
Query: 408 GYADRIHELMVISRELSIEDKSPQ--RNGSRNYFSEANYIEFSGVKVVTPT-GNVLV-EN 463
G ++++ E + D+ P G+ + IEF V P +V V +
Sbjct: 449 GASEKVFEYL---------DRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKG 499
Query: 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKPGVGSD---LNKEIFY 517
LT + PG + + GP+GSGKS++ +L L+ G + P V D L++++
Sbjct: 500 LTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVAL 559
Query: 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLT-------HGGMVELLKNVDLEYLLDRYPPE 570
V Q P G++R+ + Y LT + E + H ++E D E E
Sbjct: 560 VGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEV------GE 613
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCIT 630
K G +LS G++QR+ +AR KP+ ILDE TSA+ + E+ + +
Sbjct: 614 K----GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLL 669
Query: 631 ISHRPALV--AFHDVVLSLDGEGEWRVHD 657
I+HR + V A +VL E H
Sbjct: 670 IAHRLSTVERADQILVLKKGSVVEMGTHK 698
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 8e-14
Identities = 55/188 (29%), Positives = 81/188 (43%), Gaps = 38/188 (20%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPG-SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
++ + L ++L + PG LL GPNG+GK++L R+L L P SG I
Sbjct: 1 LQLENLTKRYGKKRALD-GVSLTLGPGMYGLL--GPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 504 KPGV-----GSDLNKEIFYVPQ--RPYTAVGTLRDQLIY--------PLTSDQEVEPLTH 548
G L + I Y+PQ Y T+R+ L Y V+
Sbjct: 58 IDGQDVLKQPQKLRRRIGYLPQEFGVYPNF-TVREFLDYIAWLKGIPSKEVKARVD---- 112
Query: 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
E+L+ V+L DR +K+I LS G ++R+G+A+ P I+DE T
Sbjct: 113 ----EVLELVNLG---DRA--KKKIG---SLSGGMRRRVGIAQALVGDPSILIVDEPT-- 158
Query: 609 VTTDMEER 616
D EER
Sbjct: 159 AGLDPEER 166
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-13
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 29/212 (13%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-- 502
I F V P G + +++ + G + +TGP+G+GKS+L +++ G G I
Sbjct: 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV 61
Query: 503 AKPGVGSDLNKEIFYVPQRPYTAVGTL-RD-QLIYPLTSDQEVE-PLTHGGM-------- 551
+ +EI ++ ++ +G + +D +L+ T + V PL G
Sbjct: 62 NGHDLSRLKGREIPFLRRQ----IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRR 117
Query: 552 -VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
E+L V L++ P +LS GEQQR+ +AR ++P + DE T +
Sbjct: 118 VSEVLDLVGLKHKARALP--------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLD 169
Query: 611 TDMEE---RFCAKVRAMGTSCITISHRPALVA 639
D+ R ++ +GT+ + +H LV
Sbjct: 170 PDLSWEIMRLFEEINRLGTTVLMATHDLELVN 201
|
Length = 223 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 1e-13
Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 445 IEFSGVKVVTPTGN----VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500
IE V +++++L++ G I G +G+GKS+L R++ L SG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 501 HIAKPGVGSD---------LNKEIFYVPQRP-YTAVGTLRDQLIYPL----TSDQEVEPL 546
+ G L ++I + Q + T+ + + +PL E++
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
ELL+ V L DRYP +LS G++QR+ +AR + PK + DE T
Sbjct: 122 VA----ELLELVGLSDKADRYP--------AQLSGGQKQRVAIARALANNPKILLCDEAT 169
Query: 607 SA 608
SA
Sbjct: 170 SA 171
|
Length = 339 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 1e-13
Identities = 55/192 (28%), Positives = 84/192 (43%), Gaps = 31/192 (16%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD-----L 511
G L L+ + G L +TGPNGSGK++L R+L GL P ++G + G D +
Sbjct: 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSI 71
Query: 512 NKEIFYVPQRP-----YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
+ + Y+ P + + LR + SD++VE E L V L DR
Sbjct: 72 ARGLLYLGHAPGIKTTLSVLENLR--FWHADHSDEQVE--------EALARVGLNGFEDR 121
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---A 623
+LS G+Q+R+ +ARL ILDE T+A+ RF + A
Sbjct: 122 P--------VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA 173
Query: 624 MGTSCITISHRP 635
G + +H+
Sbjct: 174 RGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-13
Identities = 61/224 (27%), Positives = 102/224 (45%), Gaps = 34/224 (15%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IEF V P G + +++L + G L +TGP+G+GK++L ++L G G +
Sbjct: 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61
Query: 505 PGVGSDLN----KEIFYVPQRPYTAVGT-------LRDQLIY-----PLTSDQEVEPLTH 548
G D+N +++ + +R +G L D+ +Y PL + E
Sbjct: 62 --AGEDVNRLRGRQLPLLRRR----IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQ 115
Query: 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
+ L+ V LE+ D +P ++LS GEQQR+ +AR + P + DE T
Sbjct: 116 RRVGAALRQVGLEHKADAFP--------EQLSGGEQQRVAIARAIVNSPPLLLADEPTGN 167
Query: 609 VTTDMEERFCA---KVRAMGTSCITISHRPALV-AFHDVVLSLD 648
+ D+ ER ++ GT+ I +H +LV V+ LD
Sbjct: 168 LDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILD 211
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 22/204 (10%)
Query: 445 IEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
+EF V G ++ +++L + G + + GP+GSGKS+L ++ + + SG I
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELL 555
G + L ++I V Q + T+ + + Y P + +EVE E
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVE--------EAA 112
Query: 556 KNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612
+ + + P + G+ +LS G++QR+ +AR P ILDE TSA+ T+
Sbjct: 113 RAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTE 172
Query: 613 MEERFCAKVRAM--GTSCITISHR 634
E A + + + I+HR
Sbjct: 173 SERLVQAALERLMKNRTTFVIAHR 196
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 65/228 (28%), Positives = 92/228 (40%), Gaps = 46/228 (20%)
Query: 440 SEANYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW 495
N IE + G ++L + + L V+ G + I GP+GSGKS+L VL GL
Sbjct: 2 PAENIIEVHHLSKTVGQGEGELSIL-KGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD 60
Query: 496 PLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRD----------QLIYPLTSDQEVE- 544
SG + +G L+ + A LR LI LT+ + V
Sbjct: 61 DPSSGEVRL--LGQPLH-------KLDEDARAALRARHVGFVFQSFHLIPNLTALENVAL 111
Query: 545 PLTHGGMV---------ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595
PL G LL+ V L L YP +LS GEQQR+ +AR F
Sbjct: 112 PLELRGESSADSRAGAKALLEAVGLGKRLTHYP--------AQLSGGEQQRVALARAFAG 163
Query: 596 KPKFAILDECTSAVTTDMEERFC----AKVRAMGTSCITISHRPALVA 639
+P DE T + ++ A R GT+ + ++H P L A
Sbjct: 164 RPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAA 211
|
Length = 228 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 3e-13
Identities = 129/590 (21%), Positives = 232/590 (39%), Gaps = 89/590 (15%)
Query: 95 LLSEMGKMGARDLLALVGIVVLRTALSNRLAKV-----QGFLFR-AAFLRRVPLFFQLIS 148
L S + A +LA V ++++ S A + GF R + L VPL
Sbjct: 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVV---- 60
Query: 149 ENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRIT-HPE 207
I L L S Y+ +S K+V I R FE + +S D + T
Sbjct: 61 --IGLAVLRGICSFVSTYLLSWVS---NKVVRD-IRVRMFEKLLGLPVSFFDRQPTGTLL 114
Query: 208 QRLASDVPRFCSELSE----LVQDDLTAVTDGLL-----YTWRLCSYASPKYVFWILAYV 258
R+ D + S ++ LV++ LT + GL Y+W+L + ++ V
Sbjct: 115 SRITFDSEQVASAATDAFIVLVRETLTVI--GLFIVLLYYSWQL------TLIVVVMLPV 166
Query: 259 LGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFK 318
L +MR S ++ + Q G+ + + +GG+ E ++F
Sbjct: 167 LSI--LMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYE----TRRFD 220
Query: 319 ALTRH-----MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRA 373
A++ M++ + Q L+ L +AV+L I F A + T G
Sbjct: 221 AVSNRNRRLAMKMTSAGSISSPITQ--LIASLA--LAVVLFIALFQAQA---GSLTAG-- 271
Query: 374 KMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRN 433
+ + +I+L + L +L+ + + R A+ + L+ E ++ +R
Sbjct: 272 ----DFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERA 327
Query: 434 GSRNYFSEANYIEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLG 492
+EF V P +++++L +EPG + + G +GSGKS+L ++
Sbjct: 328 RGD--------VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIP 379
Query: 493 GLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLT---SDQEV 543
+ SG I G + L +++ V Q T+ + + Y T E+
Sbjct: 380 RFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEI 439
Query: 544 EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE---LSLGEQQRLGMARLFYHKPKFA 600
E L + +D+ P + G+ LS G++QRL +AR
Sbjct: 440 E--------RALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPIL 491
Query: 601 ILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
ILDE TSA+ + E A + + G + + I+HR + + D ++ +D
Sbjct: 492 ILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMD 541
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 3e-13
Identities = 67/226 (29%), Positives = 94/226 (41%), Gaps = 52/226 (23%)
Query: 450 VKVVTPTGNV-LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV- 507
V T G V V+ ++ +++ G L I G +GSGKS L + + GL P + I +
Sbjct: 9 VSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEIL 68
Query: 508 --GSDLN------------KEIFYVPQRPYTA---VGTLRDQLIYPLTSDQEVEPLTHGG 550
G DL KEI + Q P T+ V T+ DQ+ L HG
Sbjct: 69 FDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVL--------RLHGK 120
Query: 551 M----------VELLKNVDL---EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597
+ELL+ V + E L YP ELS G +QR+ +A P
Sbjct: 121 GLSKKEAKERAIELLELVGIPDPERRLKSYP--------HELSGGMRQRVMIAMALALNP 172
Query: 598 KFAILDECTSA--VTT--DMEERFCAKVRAMGTSCITISHRPALVA 639
K I DE T+A VT + + R GT+ I I+H +VA
Sbjct: 173 KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVA 218
|
Length = 316 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 4e-13
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 32/197 (16%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKE 514
++N++ KV+ G + I G G+GKS+L L G I G+ DL
Sbjct: 24 LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83
Query: 515 IFYVPQRPYTAVGTLRDQL-IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI 573
+ +PQ P GT+R L + SD+E+ Y +
Sbjct: 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEI-----------------------YGALRVS 120
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITI 631
G LS G++Q L +AR +P+ +LDE T+++ + +R ++ +TI
Sbjct: 121 EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTI 180
Query: 632 SHRPALVAFHDVVLSLD 648
+HR + +D +L +D
Sbjct: 181 AHRLRTIIDYDKILVMD 197
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 4e-13
Identities = 51/166 (30%), Positives = 73/166 (43%), Gaps = 19/166 (11%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+E GV VL E++ L VE G + I GP+G GKS+L R++ GL SG +
Sbjct: 4 LEIEGVSKSFGGVEVL-EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLL 62
Query: 505 PG-VGSDLNKEIFYVPQRPY-----TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558
G + +I YV Q T D + L + + ELL+ V
Sbjct: 63 DGRPVTGPGPDIGYVFQEDALLPWLTV----LDNVALGLELRGKSKAEARERAKELLELV 118
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
L D+YP +LS G +QR+ +AR +PK +LDE
Sbjct: 119 GLAGFEDKYP--------HQLSGGMRQRVAIARALATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 4e-13
Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 55/183 (30%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV-----GSDLNKEI 515
+++++L VE G + GPNG+GK++L +++ GL SG I G ++ + I
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRI 75
Query: 516 FYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINW 575
Y+P+ P L LT V E L
Sbjct: 76 GYLPEEPS---------LYENLT----VR----------------ENL------------ 94
Query: 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER-----FCAKVRAMGTSCIT 630
+LS G +QRL +A+ H P+ ILDE TS + D E R +++ G + +
Sbjct: 95 --KLSGGMKQRLALAQALLHDPELLILDEPTSGL--DPESRREFWELLRELKKEGKTILL 150
Query: 631 ISH 633
SH
Sbjct: 151 SSH 153
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 5e-13
Identities = 68/264 (25%), Positives = 122/264 (46%), Gaps = 20/264 (7%)
Query: 383 TSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEA 442
S++ S + + L L L G +R+ +++ + +E++ GS +
Sbjct: 416 QSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLS 475
Query: 443 NYIEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
Y+E + +P L+EN +L ++PG + + G +GSGKS++ +++ GL+ SG
Sbjct: 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535
Query: 502 IAKPGVG-SDLNKEIF-----YVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVE 553
I G+ ++ +E+ V Q + GT+RD L P D + +V
Sbjct: 536 ILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDAD--------LVR 587
Query: 554 LLKNVDLEYLLDRYPPEKE---INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
K+ + ++ P + G LS G++QRL +AR P ILDE TSA+
Sbjct: 588 ACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALD 647
Query: 611 TDMEERFCAKVRAMGTSCITISHR 634
+ E+ +R G +CI ++HR
Sbjct: 648 PETEKIIDDNLRRRGCTCIIVAHR 671
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 6e-13
Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 38/211 (18%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+E V+ + VL +++ L +E G +++ GP+G GKS+L R++ GL SG I
Sbjct: 4 LELKNVRKSFGSFEVL-KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILI 62
Query: 505 PG-VGSDLNKE---IFYVPQRPYTAV---GTLRDQLIYPLTS--------DQEVEPLTHG 549
G +DL E I V Q A+ T+ + + + L D+ V+
Sbjct: 63 DGRDVTDLPPEKRGIAMVFQNY--ALYPHMTVYENIAFGLKLRGVPKAEIDKRVK----- 115
Query: 550 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
E+ K + LE+LL+R P +LS G++QR+ +AR KPK +LDE S +
Sbjct: 116 ---EVAKLLGLEHLLNRKP--------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNL 164
Query: 610 ----TTDMEERFCAKVRAMGTSCITISHRPA 636
M +GT+ I ++H
Sbjct: 165 DAKLRVLMRSEIKKLHERLGTTTIYVTHDQV 195
|
Length = 338 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 7e-13
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 57/185 (30%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
V+ ++ ++ G L + G +G GKS+L R++ GL SG I
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI------------------ 70
Query: 521 RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL-EYLLDRYPPEKEINWGDEL 579
+ I L+ ++ E + +ELL+ V L E L RYP EL
Sbjct: 71 -------LFEGKDITKLSKEERRERV-----LELLEKVGLPEEFLYRYP--------HEL 110
Query: 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTT-----------DMEERFCAKVRAMGTSC 628
S G++QR+G+AR PK + DE SA+ D++E G +
Sbjct: 111 SGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL-------GLTY 163
Query: 629 ITISH 633
+ ISH
Sbjct: 164 LFISH 168
|
Length = 268 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 1e-12
Identities = 53/195 (27%), Positives = 77/195 (39%), Gaps = 29/195 (14%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV--------- 507
G V + L + G +I G +GSGKS+ R+L L +G I G
Sbjct: 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVE 64
Query: 508 -GSDLNKEIFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 562
K+I V Q+ P+ T+ E +ELLK V LE
Sbjct: 65 LREVRRKKIGMVFQQFALFPHM---TILQNTSLGPELLGWPEQERKEKALELLKLVGLEE 121
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA----VTTDMEERFC 618
RYP DELS G QQR+G+AR +P ++DE SA + M++
Sbjct: 122 YEHRYP--------DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELK 173
Query: 619 AKVRAMGTSCITISH 633
+ + + I+H
Sbjct: 174 KLQATLQKTIVFITH 188
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-12
Identities = 53/213 (24%), Positives = 94/213 (44%), Gaps = 37/213 (17%)
Query: 440 SEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 499
+E V + V++++L ++ G + + GP+G GK++L R++ G S
Sbjct: 1 MPKPALEIRNVSK-SFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 500 GHIAKPGVGSDLNKEIFYVP--QRPYTAVG------------TLRDQLIYPLTSDQEVEP 545
G I G ++I VP +RP +G T+ + + + L ++++
Sbjct: 60 GEILLDG------EDITDVPPEKRP---IGMVFQSYALFPHMTVEENVAFGLKVRKKLKK 110
Query: 546 LTHGGMV-ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
V E L+ V LE DR P +LS G+QQR+ +AR +PK +LDE
Sbjct: 111 AEIKARVEEALELVGLEGFADRKP--------HQLSGGQQQRVALARALVPEPKVLLLDE 162
Query: 605 CTSA----VTTDMEERFCAKVRAMGTSCITISH 633
SA + M + R +G + + ++H
Sbjct: 163 PLSALDAKLREQMRKELKELQRELGITFVYVTH 195
|
Length = 352 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 2e-12
Identities = 46/177 (25%), Positives = 70/177 (39%), Gaps = 26/177 (14%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-----VGSDL 511
+L E L+ + G L +TGPNG GK++L R+L GL SG + G +
Sbjct: 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEP 71
Query: 512 NKEIFYVPQRP-----YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
++ I Y+ P +A+ L + + V L E L
Sbjct: 72 HRNILYLGHLPGLKPELSALENL--HFWAAIHGGAQRTIEDALAAVGLT---GFEDLPAA 126
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623
LS G+Q+RL +ARL+ + ILDE T+A+ +RA
Sbjct: 127 Q-----------LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRA 172
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-12
Identities = 81/274 (29%), Positives = 125/274 (45%), Gaps = 32/274 (11%)
Query: 392 SLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVK 451
S+GTLS L R +G A+R+ EL+ E I+ + + E IEF V
Sbjct: 290 SIGTLSEVWGELQRAAGAAERLIELL--QAEPDIKAPAHPKTLPVPLRGE---IEFEQVN 344
Query: 452 VVTPT-GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG- 508
P + + L L V PG + + GP+G+GKS+LF++L + SG I GV
Sbjct: 345 FAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL 404
Query: 509 -----SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVE-----PLTHGGMVELLK 556
++L + VPQ P ++ + + Y P +D+EVE H + L +
Sbjct: 405 RQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPE 464
Query: 557 NVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
D YL +R G LS G++QR+ +AR +LDE TSA+ + E+
Sbjct: 465 GYD-TYLGER---------GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQL 514
Query: 617 F-CAKVRAM-GTSCITISHRPALVAFHDVVLSLD 648
A M G + + I+HR A V D ++ +D
Sbjct: 515 VQQALETLMKGRTTLIIAHRLATVLKADRIVVMD 548
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 3e-12
Identities = 68/274 (24%), Positives = 118/274 (43%), Gaps = 33/274 (12%)
Query: 386 IISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANY- 444
II+L L +++ RLN E+ ++ E R + N
Sbjct: 431 IINLQPKLQAARVANNRLN----------EVYLVDSEFI-------NKKKRTELNNLNGD 473
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
I + V G+ ++ +++L ++ S I G +GSGKS+L ++L G + SG I
Sbjct: 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533
Query: 505 PGVGSD------LNKEIFYVPQRPYTAVGTLRDQLIY---PLTSDQEVEPLTHGGMVELL 555
G L + I Y+PQ PY G++ + L+ S E+ + E+
Sbjct: 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACE--IAEIK 591
Query: 556 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
D+E + Y E G +S G++QR+ +AR K ILDE TS + T E+
Sbjct: 592 D--DIENMPLGYQTELSEE-GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEK 648
Query: 616 RFCAKVRAMG-TSCITISHRPALVAFHDVVLSLD 648
+ + + + I ++HR ++ D ++ LD
Sbjct: 649 KIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLD 682
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 38/188 (20%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-- 502
IE + P G+ ++++ L++ G + I GP+G+GKS+L R L GL SG I
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILF 63
Query: 503 ----AKPGVGSDLNKE------IFYVP-----QRPYTAVGTLRD------QLIYPLTSDQ 541
G +L K IF V R + ++ L S +
Sbjct: 64 NGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE 123
Query: 542 EVEPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600
+ ++ L+ V L+ R LS G+QQR+ +AR +PK
Sbjct: 124 DKA-----QALDALERVGILDKAYQR---------ASTLSGGQQQRVAIARALVQQPKII 169
Query: 601 ILDECTSA 608
+ DE ++
Sbjct: 170 LADEPVAS 177
|
Length = 258 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 4e-12
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 18/179 (10%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IE + P G +++++L + PG + + GP+G+GKS+L R L GL SG +
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 505 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHG---------GMVEL 554
G D+NK ++ +G + Q + L V E + G + L
Sbjct: 61 DGT--DINKLKGKALRQLRRQIGMIFQQ--FNLIERLSVLENVLSGRLGRRSTWRSLFGL 116
Query: 555 LKNVDLE---YLLDRYP-PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
+ + L+R +K D+LS G+QQR+ +AR +PK + DE +++
Sbjct: 117 FPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASL 175
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 5e-12
Identities = 58/243 (23%), Positives = 105/243 (43%), Gaps = 34/243 (13%)
Query: 408 GYADRIHELMVISRELSIEDKSPQRNGSRNYFSE-ANYIEFSGVKVVTPTGNVLVENLTL 466
G A+ + + + + G + S IE +++++P G L L
Sbjct: 319 GAAESLVTFLE-------TPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNF 371
Query: 467 KVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLN-----KEIFYVPQ 520
+ G + + GP+G+GK+SL L G P G + G+ +L+ K + +V Q
Sbjct: 372 TLPAGQRIALVGPSGAGKTSLLNALLGFLPY-QGSLKINGIELRELDPESWRKHLSWVGQ 430
Query: 521 RPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP-----PEKEI 573
P GTLRD ++ P SD++++ + L+N + L P P +
Sbjct: 431 NPQLPHGTLRDNVLLGNPDASDEQLQ--------QALENAWVSEFLPLLPQGLDTPIGDQ 482
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFC-AKVRAM-GTSCITI 631
G LS+G+ QRL +AR + +LDE T+++ E+ A A + + +
Sbjct: 483 AAG--LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMV 540
Query: 632 SHR 634
+H+
Sbjct: 541 THQ 543
|
Length = 588 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 5e-12
Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 20/131 (15%)
Query: 485 SSLFRVLGGLWPLVSG-------HIAKPGVGSDLNKEIFYVPQRPYTAVG-TLRDQLIYP 536
S+L +++ GL SG L K I V Q P T+R+ L +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596
L + E L+ V L LDR P LS G++QR+ +AR K
Sbjct: 61 LRDKEADAR-----AEEALERVGLPDFLDREPV-------GTLSGGQKQRVAIARALLKK 108
Query: 597 PKFAILDECTS 607
PK +LDE T+
Sbjct: 109 PKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 8e-12
Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 15/150 (10%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIF 516
++++ L+V GS + + GP+GSGKS+L R++ GL SG I G +++I
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 517 YVPQRPYTAVG--TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 574
+V Q Y T+RD + + L + + + ELL+ V LE L DRYP
Sbjct: 76 FVFQH-YALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP------ 128
Query: 575 WGDELSLGEQQRLGMARLFYHKPKFAILDE 604
++LS G++QR+ +AR +P+ +LDE
Sbjct: 129 --NQLSGGQRQRVALARALAVEPQVLLLDE 156
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 34/190 (17%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKE----IF 516
V+N++ +V PG + GPNG+GK++ FR++ GL G I G L++E I
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITW--NGGPLSQEIKNRIG 75
Query: 517 YVP-QRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD-------LEYLLDRYP 568
Y+P +R T+ DQL Y LK + L+ L+R
Sbjct: 76 YLPEERGLYPKMTVEDQLKYLAE----------------LKGMPKAEIQKKLQAWLERLE 119
Query: 569 -PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA---VTTDMEERFCAKVRAM 624
K+ ELS G QQ++ H+P+ ILDE S V ++ + +++
Sbjct: 120 IVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE 179
Query: 625 GTSCITISHR 634
G + I SHR
Sbjct: 180 GATIIFSSHR 189
|
Length = 300 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-11
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 505
E + L +N++L ++ G + + GPNGSGKS+L R + GL SG I
Sbjct: 1 EIENLSFRYGGRTAL-DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILID 59
Query: 506 GVG------SDLNKEIFYVPQ 520
G +L + I YVPQ
Sbjct: 60 GKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 25/163 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G V ++ ++L ++ G + GP+G GK++L R++ G SG I G K+I
Sbjct: 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDG------KDIT 65
Query: 517 YVP--QRPYTAVG---------TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD 565
+P +RP V T+ + + + L + + + E L V LE +
Sbjct: 66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYAN 125
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
R P +LS G+QQR+ +AR ++PK +LDE A
Sbjct: 126 RKP--------SQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKE- 514
++N++L+VE G +I GP GSGKS L + G SG I G ++L E
Sbjct: 11 KEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEK 70
Query: 515 --IFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 568
I YVPQ P+ T+ + Y L + + ++E+ + + +++LL+R P
Sbjct: 71 RDISYVPQNYALFPHM---TVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP 127
Query: 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
+ LS GEQQR+ +AR PK +LDE SA+ +E+
Sbjct: 128 --------ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEK 167
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 3e-11
Identities = 50/167 (29%), Positives = 73/167 (43%), Gaps = 33/167 (19%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G ++ NL L + G L + GP+G GK+++ R++ G SG I G D+
Sbjct: 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQ--DITH--- 80
Query: 517 YVP--QRPYTAV---------GTLRDQLIYPL----TSDQEVEPLTHGGMVELLKNVDLE 561
VP R V T+ + + + L T E+ P E L+ V LE
Sbjct: 81 -VPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVM----EALRMVQLE 135
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
R P +LS G+QQR+ +AR +KPK +LDE SA
Sbjct: 136 EFAQRKP--------HQLSGGQQQRVAIARAVVNKPKVLLLDESLSA 174
|
Length = 375 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 3e-11
Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 25/151 (16%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR- 521
+++L+++PG L + GPNG+GKS+L RV+ GL G I + G I YVPQ+
Sbjct: 22 DVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----KLRIGYVPQKL 76
Query: 522 ---PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE 578
+ R + P T +++ P LK V +L+D P +K
Sbjct: 77 YLDTTLPLTVNRFLRLRPGTKKEDILP--------ALKRVQAGHLID-APMQK------- 120
Query: 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
LS GE QR+ +AR ++P+ +LDE T V
Sbjct: 121 LSGGETQRVLLARALLNRPQLLVLDEPTQGV 151
|
Length = 251 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 59/194 (30%), Positives = 85/194 (43%), Gaps = 44/194 (22%)
Query: 445 IEFSGV-KVVTPTGN--VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
IE V KV TG +++++L V G I G +G+GKS+L R + GL SG
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 502 IAKPGV------GSDL---NKEIFYVPQ-------RPYTAVGTLRDQLIYPL----TSDQ 541
+ G G +L + I + Q R T+ + + PL
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR------TVFENVALPLEIAGVPKA 115
Query: 542 EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601
E+E ELL+ V LE D YP +LS G++QR+G+AR + PK +
Sbjct: 116 EIEERVL----ELLELVGLEDKADAYP--------AQLSGGQKQRVGIARALANNPKVLL 163
Query: 602 LDECTSAV---TTD 612
DE TSA+ TT
Sbjct: 164 CDEATSALDPETTQ 177
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 53/160 (33%), Positives = 74/160 (46%), Gaps = 19/160 (11%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEI 515
++ N++ + G LITGP+G GKS+L +++ L SG + G S L EI
Sbjct: 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78
Query: 516 F-----YVPQRPYTAVGTLRDQLIYP-LTSDQEVEPLTHGGMVELLKNVDLEYL-LDRYP 568
+ Y Q P T+ D LI+P +Q+ +P L DLE L
Sbjct: 79 YRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP------AIFLD--DLERFALPDTI 130
Query: 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
K I ELS GE+QR+ + R PK +LDE TSA
Sbjct: 131 LTKNIA---ELSGGEKQRISLIRNLQFMPKVLLLDEITSA 167
|
Length = 225 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 5e-11
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 25/178 (14%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IEF V G V NL L++ G L++ GP+GSGK++ +++ L SG I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 505 PGV------GSDLNKEIFYVPQRPYTAVG-----TLRDQLIYPLTSDQEVEPLTHGGMVE 553
G +L ++I YV Q+ +G T+ + + + + E
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQ----IGLFPHMTVEENIALVPKLLKWPKEKIRERADE 116
Query: 554 LLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
LL V L+ DRYP ELS G+QQR+G+AR P ++DE A+
Sbjct: 117 LLALVGLDPAEFADRYP--------HELSGGQQQRVGVARALAADPPLLLMDEPFGAL 166
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 5e-11
Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 34/182 (18%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IEF V V+++ L +E G L++ GP+GSGK++ +++ L SG I
Sbjct: 2 IEFENV-SKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60
Query: 505 PGV------GSDLNKEIFYVPQR----PYTAVG---TLRDQL--IYPLTSDQEVEPLTHG 549
G +L ++I YV Q+ P+ V +L + +
Sbjct: 61 DGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRAD----- 115
Query: 550 GMVELLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
ELL V L+ DRYP ELS G+QQR+G+AR P ++DE
Sbjct: 116 ---ELLDLVGLDPSEYADRYP--------HELSGGQQQRVGVARALAADPPILLMDEPFG 164
Query: 608 AV 609
A+
Sbjct: 165 AL 166
|
Length = 309 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 6e-11
Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 40/206 (19%)
Query: 452 VVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD 510
++ TG + V +++L V G +I G +GSGKS+L R + L SG + G D
Sbjct: 30 ILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQ--D 87
Query: 511 LN------------KEIFYV-------PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM 551
+ K+I V P R T+ + + + L
Sbjct: 88 IAAMSRKELRELRRKKISMVFQSFALLPHR------TVLENVAFGLEVQGVPRAEREERA 141
Query: 552 VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--- 608
E L+ V LE +YP DELS G QQR+G+AR P ++DE SA
Sbjct: 142 AEALELVGLEGWEHKYP--------DELSGGMQQRVGLARALAVDPDILLMDEAFSALDP 193
Query: 609 -VTTDMEERFCAKVRAMGTSCITISH 633
+ +M++ + + + I+H
Sbjct: 194 LIRREMQDELLRLQAELQKTIVFITH 219
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 9e-11
Identities = 50/170 (29%), Positives = 73/170 (42%), Gaps = 34/170 (20%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNK-EI 515
+++ + L V+ G ++I GP+GSGKS+L R + L SG I G+ +K I
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 516 FYVPQRPYTAVG------------TLRDQLIYPLT-----SDQEVEPLTHGGMVELLKNV 558
+ Q+ VG T+ + + S E E ELL+ V
Sbjct: 72 NELRQK----VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERAL----ELLEKV 123
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
L D YP +LS G+QQR+ +AR PK + DE TSA
Sbjct: 124 GLADKADAYP--------AQLSGGQQQRVAIARALAMNPKVMLFDEPTSA 165
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 1e-10
Identities = 51/163 (31%), Positives = 71/163 (43%), Gaps = 33/163 (20%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522
++L VE G ++I GP+GSGKS+L R L GL SG I G K+I + ++
Sbjct: 20 GISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK- 78
Query: 523 YTAVG------------TLRDQLIYPLT-----SDQEVEPLTHGGMVELLKNVDLEYLLD 565
VG T+ + + S E + ELL+ V L D
Sbjct: 79 ---VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREK---AL-ELLEKVGLADKAD 131
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
YP +LS G+QQR+ +AR PK + DE TSA
Sbjct: 132 AYP--------AQLSGGQQQRVAIARALAMDPKVMLFDEPTSA 166
|
Length = 240 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 1e-10
Identities = 56/204 (27%), Positives = 82/204 (40%), Gaps = 37/204 (18%)
Query: 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD---- 510
P G +++ L E G L + G NG+GKS+L L GL SG + G D
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 511 ----LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE--PLTHGG--------MVELLK 556
+ + V Q P DQL DQ+V PL G + E L
Sbjct: 62 GLLERRQRVGLVFQDP-------DDQLFAA-DVDQDVAFGPLNLGLSEAEVERRVREALT 113
Query: 557 NVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
V L +R P LS GE++R+ +A +P +LDE T+ + E+
Sbjct: 114 AVGASGLRER-PTH-------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQ 165
Query: 617 FCA---KVRAMGTSCITISHRPAL 637
A ++RA G + + +H L
Sbjct: 166 MLAILRRLRAEGMTVVISTHDVDL 189
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 2e-10
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 23/263 (8%)
Query: 402 RLNRLSGYADRIHELMVISREL-SIEDKSPQRNGSRNYFSEANY---IEFSGVKVVTPTG 457
RL+++SG+ +I E + +ED QR + N +EF +
Sbjct: 288 RLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANS 347
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDL 511
+ V +++ + + G + I GP G+GK++L +L ++ G I G+ L
Sbjct: 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESL 407
Query: 512 NKEIFYVPQRPYTAVGTLRDQLIYPLT--SDQEVEPLTHGGMVELLKNVDLEYLLDRYPP 569
K I V Q ++R+ + +D+EV +++L R
Sbjct: 408 RKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAH-------DFILKRSNG 460
Query: 570 EKEI--NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTS 627
+ G+ LS GE+QRL +AR +LDE TSA+ + E R + A+ +
Sbjct: 461 YDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKN 520
Query: 628 CIT--ISHRPALVAFHDVVLSLD 648
T I+HR + V D+VL LD
Sbjct: 521 RTTFIIAHRLSTVRNADLVLFLD 543
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-10
Identities = 48/179 (26%), Positives = 72/179 (40%), Gaps = 50/179 (27%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+EF V G +L+++L+ +++ G + I GPNG+GKS+L ++L G +SG + K
Sbjct: 322 LEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV-K 380
Query: 505 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
G +I Y Q RD+L K V LE L
Sbjct: 381 VGE----TVKIGYFDQH--------RDELD-------------------PDKTV-LEELS 408
Query: 565 DRYPPEKEINWGD-----------------ELSLGEQQRLGMARLFYHKPKFAILDECT 606
+ +P E LS GE+ RL +A+L P +LDE T
Sbjct: 409 EGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT 467
|
Length = 530 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 2e-10
Identities = 57/208 (27%), Positives = 90/208 (43%), Gaps = 44/208 (21%)
Query: 452 VVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S 509
++ TG V+ V + +L VE G +I G +GSGKS+L R+L L G I G +
Sbjct: 34 ILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIA 93
Query: 510 DLNKE------------IF----YVPQRPYTAVGTLRDQLIYPL----TSDQEVEPLTHG 549
L+ +F +P R T+ + + + L E E
Sbjct: 94 KLSAAELRELRRKKISMVFQSFALLPHR------TVLENVAFGLEVQGVPKAEREERAL- 146
Query: 550 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA- 608
E L+ V LE D+YP +ELS G QQR+G+AR + P ++DE SA
Sbjct: 147 ---EALELVGLEGYADKYP--------NELSGGMQQRVGLARALANDPDILLMDEAFSAL 195
Query: 609 ---VTTDMEERFCAKVRAMGTSCITISH 633
+ T+M++ + + + I+H
Sbjct: 196 DPLIRTEMQDELLELQAKLKKTIVFITH 223
|
Length = 386 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 3e-10
Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 34/203 (16%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG----VGSD----- 510
+++++T+K+ S I GP+GSGKS+L +VL L + I G G D
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 511 ---LNKEIFYVPQRPYTAVG-TLRDQLIYPLTS-----DQEVEPLTHGGMVELLKNVDL- 560
L KE+ V Q+P ++ D + YPL S +E++ + + E L+ V L
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKI----VEECLRKVGLW 140
Query: 561 EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEER 616
+ + DR +LS G+QQRL +AR KPK ++DE TS + + +E+
Sbjct: 141 KEVYDRLNSP-----ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKL 195
Query: 617 FCAKVRAMGTSCITISHRPALVA 639
+ + + +SH P VA
Sbjct: 196 ITELKNEI--AIVIVSHNPQQVA 216
|
Length = 257 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 4e-10
Identities = 66/238 (27%), Positives = 105/238 (44%), Gaps = 41/238 (17%)
Query: 430 PQRNGSRNYFSEANYIEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLF 488
P+ G+ I F ++ P ++ NL L ++PG + I GP+GSGKS+L
Sbjct: 450 PELRGA---------ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLT 500
Query: 489 RVLGGLWP------LVSGH---IAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQ--LIYPL 537
++L L+ LV G IA P + L +++ V Q ++RD L P
Sbjct: 501 KLLQRLYTPQHGQVLVDGVDLAIADP---AWLRRQMGVVLQENVLFSRSIRDNIALCNPG 557
Query: 538 TSDQEVEPLT-----HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592
+ V H + EL + + E EK G LS G++QR+ +AR
Sbjct: 558 APFEHVIHAAKLAGAHDFISELPQGYNTEVG------EK----GANLSGGQRQRIAIARA 607
Query: 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
P+ I DE TSA+ + E +R + G + I I+HR + V D ++ L+
Sbjct: 608 LVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLE 665
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 4e-10
Identities = 62/208 (29%), Positives = 93/208 (44%), Gaps = 49/208 (23%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDL--------- 511
V+ +TL++ G L + G +G GKS+ R + GL G +A +G DL
Sbjct: 37 VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVA--WLGKDLLGMKDDEWR 94
Query: 512 --NKEIFYVPQRPYTAVG---TLRD------QLIYPLTSDQEVEPLTHGGM--VELLKNV 558
+I + Q P ++ T+ + + +P S QEV+ M V LL N
Sbjct: 95 AVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN- 153
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFC 618
L++RYP E S G+ QR+G+AR +PK I DE SA+ ++
Sbjct: 154 ----LINRYP--------HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQ---- 197
Query: 619 AKV--------RAMGTSCITISHRPALV 638
A+V R MG S I I+H A+V
Sbjct: 198 AQVVNLLQQLQREMGLSLIFIAHDLAVV 225
|
Length = 331 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 4e-10
Identities = 56/202 (27%), Positives = 100/202 (49%), Gaps = 14/202 (6%)
Query: 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLN- 512
P G +++++++L++EPG + I GP+GSGKS+L R+L G SG + G + L+
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDV 522
Query: 513 ----KEIFYVPQRPYTAVGTLRDQLI--YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
+++ V Q G++ + + PLT D+ E G+ E ++ + + +
Sbjct: 523 QAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMG--MHT 580
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 626
E G LS G++QRL +AR KP+ + DE TSA+ + + +
Sbjct: 581 VISEG----GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKV 636
Query: 627 SCITISHRPALVAFHDVVLSLD 648
+ I I+HR + + D + LD
Sbjct: 637 TRIVIAHRLSTIRNADRIYVLD 658
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 4e-10
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 22/181 (12%)
Query: 427 DKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSS 486
+K+ Q N R + S+ N + FS + +V G +++N+ LK+E G L ITG GSGK+S
Sbjct: 22 EKAKQENNDRKHSSDDNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTS 78
Query: 487 LFR-VLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP 545
L +LG L P G I G I + Q + GT+++ +I+ ++ D+
Sbjct: 79 LLMLILGELEP-SEGKIKHSG-------RISFSSQFSWIMPGTIKENIIFGVSYDEY--- 127
Query: 546 LTHGGMVELLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAIL 602
++K LE + ++P + G+ LS G++ R+ +AR Y +L
Sbjct: 128 ----RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLL 183
Query: 603 D 603
D
Sbjct: 184 D 184
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 4e-10
Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 16/185 (8%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HIAKPGVGSDLNKEIFYV 518
+++++ VE G + GPNG+GK++ R++ G+ SG + I Y+
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75
Query: 519 PQ-RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP-PEKEINWG 576
P+ R + DQL+Y L + ++ E + +D L+R E
Sbjct: 76 PEERGLYPKMKVIDQLVY-LAQLKGLKK------EEARRRID--EWLERLELSEYANKRV 126
Query: 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSA---VTTDMEERFCAKVRAMGTSCITISH 633
+ELS G QQ++ H P+ ILDE S V ++ + ++ G + I +H
Sbjct: 127 EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTH 186
Query: 634 RPALV 638
+ LV
Sbjct: 187 QMELV 191
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 5e-10
Identities = 53/220 (24%), Positives = 86/220 (39%), Gaps = 51/220 (23%)
Query: 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH----- 501
F G+ + +++ V PG + GPNG+GK++LF ++ G SG
Sbjct: 10 FGGLVALD--------DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDG 61
Query: 502 ----------IAKPGVG-SDLNKEIF---------YVPQRPYTAVGTLRDQLIYPLTSDQ 541
IA+ G+G + +F V + T G L + ++
Sbjct: 62 EDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLAR---ARREER 118
Query: 542 EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601
E ELL+ V L L DR ELS G+Q+RL +AR PK +
Sbjct: 119 EARERAE----ELLERVGLADLADRPA--------GELSYGQQRRLEIARALATDPKLLL 166
Query: 602 LDECTSAVTTDMEERFCA---KVRAMGTSCITISHRPALV 638
LDE + + + E ++R G + + + H +V
Sbjct: 167 LDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVV 206
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 5e-10
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 23/158 (14%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNK--- 513
+++L L + G +++ GP+G GK++ R++ GL SG I G D+
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGR--DVTDLPP 69
Query: 514 ---EIFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
+I V Q P+ V D + + L + + + E+ + + +E+LLDR
Sbjct: 70 KDRDIAMVFQNYALYPHMTV---YDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDR 126
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
P +LS G++QR+ + R +PK ++DE
Sbjct: 127 KP--------KQLSGGQRQRVALGRAIVREPKVFLMDE 156
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 8e-10
Identities = 46/180 (25%), Positives = 71/180 (39%), Gaps = 31/180 (17%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
L +L+ + G L ITGPNG+GK++L R+L GL +G + G +E +
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESY 73
Query: 517 -----YVPQRP-----YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD- 565
Y+ +P TA+ L + + E L V L L D
Sbjct: 74 HQALLYLGHQPGIKTELTALENLH---FWQRFHGSGNAA----TIWEALAQVGLAGLEDL 126
Query: 566 --RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623
LS G+Q+R+ +ARL+ ILDE +A+ + A + A
Sbjct: 127 PVGQ-----------LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAA 175
|
Length = 209 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 9e-10
Identities = 60/181 (33%), Positives = 80/181 (44%), Gaps = 33/181 (18%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG---- 500
IEF V VL N+ L ++ G ++I GP+GSGKS+L R + L + SG
Sbjct: 2 IEFKNVSKHFGPTQVL-HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60
Query: 501 ---HIAKPGVG-SDLNKEIFYVPQRPY-----TAVGTLRDQLIYPL----TSDQEVEPLT 547
+ P V + +E V Q+ Y TA L + + PL S +E E
Sbjct: 61 DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTA---LENVMFGPLRVRGASKEEAEKQA 117
Query: 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
ELL V L YP ELS G+QQR+ +AR KPK + DE TS
Sbjct: 118 R----ELLAKVGLAERAHHYP--------SELSGGQQQRVAIARALAVKPKLMLFDEPTS 165
Query: 608 A 608
A
Sbjct: 166 A 166
|
Length = 240 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 9e-10
Identities = 53/216 (24%), Positives = 86/216 (39%), Gaps = 57/216 (26%)
Query: 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG 506
F GVK + ++L V PG + G NG+GKS+L ++L G++P SG
Sbjct: 18 FGGVKALD--------GVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG------ 63
Query: 507 VGSDLNKEIFY--VPQRPYTAVGTLRD--QLIYPLTSDQEV----------------EPL 546
EI P + L ++ QE+ EP
Sbjct: 64 -------EILIDGKPVAFSSPRDALAAGIATVH-----QELSLVPNLSVAENIFLGREPT 111
Query: 547 THGGMVELLK-NVDLEYLLDRY----PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601
G+++ LL R P+ + +LS+ ++Q + +AR + I
Sbjct: 112 RRFGLIDRKAMRRRARELLARLGLDIDPDTLVG---DLSIAQRQMVEIARALSFDARVLI 168
Query: 602 LDECTSAVT---TDMEERFCAKVRAMGTSCITISHR 634
LDE T+A+T T+ +++A G + I ISHR
Sbjct: 169 LDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHR 204
|
Length = 500 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 23/185 (12%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
V +++ + E G + G NG+GK++L R++ L SG + GV D ++ +V +
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGV--DTVRDPSFVRR 75
Query: 521 RPYTAVGTLRDQ--LIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGD- 577
+ +G L + L LT+ E L + + L +++ + K + +
Sbjct: 76 K----IGVLFGERGLYARLTAR---ENLKYFARLNGLSRKEIKARIAEL--SKRLQLLEY 126
Query: 578 ------ELSLGEQQRLGMARLFYHKPKFAILDECTSAV---TTDMEERFCAKVRAMGTSC 628
E S G +Q++ +AR H P +LDE TS + T F +++ G +
Sbjct: 127 LDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAV 186
Query: 629 ITISH 633
I SH
Sbjct: 187 IFSSH 191
|
Length = 245 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 30/186 (16%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDL-----NKEIFY 517
++TL G L++ GP+G+GKSSL RVL L SG + G D +K I
Sbjct: 20 DITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI-- 77
Query: 518 VPQRPYTAVGTLRDQL-IYPLTSDQE--VE-PLTHGGM---------VELLKNVDLEYLL 564
+ VG + Q ++P + QE +E P G+ +LLK + L+
Sbjct: 78 --RDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYA 135
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM 624
DRYP LS G+QQR+ +AR +P+ + DE T+A+ ++ + + ++ +
Sbjct: 136 DRYPL--------HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL 187
Query: 625 GTSCIT 630
+ IT
Sbjct: 188 AETGIT 193
|
Length = 242 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 37/166 (22%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522
++ L++ PG +++TGP+GSGK++L ++GGL + G + L +E++ ++
Sbjct: 23 DINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL------KVLGQELYGASEKE 76
Query: 523 YTAVGTLRDQLIY---------PLTSDQEV-------EPLTHGGMVEL----LKNVDLEY 562
+ R + Y LT+ Q V L++ E L+ V L
Sbjct: 77 LVQL---RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGD 133
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
LD YP LS G++QR+ +AR H+PK + DE T+A
Sbjct: 134 HLDYYP--------HNLSGGQKQRVAIARALVHRPKLVLADEPTAA 171
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 39/208 (18%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDL-N 512
++L + G + I G +GSGKS+L +LGGL SG + G + L N
Sbjct: 23 GVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRN 82
Query: 513 KEIFYVPQ-----RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRY 567
K++ ++ Q +TA L + + L + V+ E+L+ V LE+ ++
Sbjct: 83 KKLGFIYQFHHLLPDFTA---LENVAMPLLIGKKSVKEAKERAY-EMLEKVGLEHRINHR 138
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV------ 621
P ELS GE+QR+ +AR ++P + DE T +++ +
Sbjct: 139 P--------SELSGGERQRVAIARALVNQPSLVLADEPTG----NLDNNNAKIIFDLMLE 186
Query: 622 --RAMGTSCITISHRPALVAFHDVVLSL 647
R + TS + ++H L D VL +
Sbjct: 187 LNRELNTSFLVVTHDLELAKKLDRVLEM 214
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 61/210 (29%), Positives = 94/210 (44%), Gaps = 35/210 (16%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNK--------- 513
N++L +E G + + G +G GKS+L R+L GL G ++ G DL +
Sbjct: 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQ--DLYQLDRKQRRAF 86
Query: 514 --EIFYVPQRPYTAVG---TLRDQLIYPL---TSDQEVEPLTHGGMVELLKNVDLE-YLL 564
++ V Q +AV T+R + PL TS E E + ELL V L
Sbjct: 87 RRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKAR--IAELLDMVGLRSEDA 144
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM 624
D+ P + LS G+ QR+ +AR KPK +LDE S + ++ +R +
Sbjct: 145 DKLPRQ--------LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKL 196
Query: 625 ----GTSCITISHRPALV-AFHDVVLSLDG 649
GT+ + I+H LV +F V +D
Sbjct: 197 QQAFGTAYLFITHDLRLVQSFCQRVAVMDK 226
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 24/198 (12%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVG-SDLNKE-- 514
+++ + L V+ G I GPNGSGKS+L + G + + G I G +L+ +
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78
Query: 515 ----IFYVPQRPYTAVG-TLRDQLIYPLTS---DQEVEPLTHGGMVELLKNVDL-EYLLD 565
IF Q P G T D L + + + + P + E + + L E L+
Sbjct: 79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE 138
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM- 624
RY +N G S GE++R + +L +PK AILDE S + D + + A+
Sbjct: 139 RY-----VNEG--FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR 191
Query: 625 --GTSCITISHRPALVAF 640
G + I+H L+ +
Sbjct: 192 EEGRGVLIITHYQRLLDY 209
|
Length = 251 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 28/205 (13%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKE 514
+++++ V G + I G NGSGKS+L ++L GL +G I G+ D+ ++
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82
Query: 515 IFYVPQRPYTA-VG-TLRDQLIYPLTSDQEVEPLTHGGMVE----LLKNVDLEYLLDRYP 568
+ V Q P VG T++D + + L E + MVE L+ V +E L+R P
Sbjct: 83 VGMVFQNPDNQFVGATVQDDVAFGL----ENIGVPREEMVERVDQALRQVGMEDFLNREP 138
Query: 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM---- 624
LS G++QR+ +A + +P ILDE TS + VR +
Sbjct: 139 --------HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK 190
Query: 625 GTSCITISHRPALVAFHDVVLSLDG 649
G + ++I+H A D V+ ++
Sbjct: 191 GITVLSITHDLDEAAQADRVIVMNK 215
|
Length = 279 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-09
Identities = 43/184 (23%), Positives = 70/184 (38%), Gaps = 28/184 (15%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
I + + L+EN++L + PG + + G NG+GKS+L ++L G SG + +
Sbjct: 4 ITLENLSLAYG-DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62
Query: 505 PGVGSDLNKEIFYVPQRPY-TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY- 562
P + Y+ Q P T+ D +I +E+ L D
Sbjct: 63 PK-----GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLA 117
Query: 563 -------LLDRYPPEKEIN-----WGD--------ELSLGEQQRLGMARLFYHKPKFAIL 602
LD + E G LS G ++R+ +AR +P +L
Sbjct: 118 ELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLL 177
Query: 603 DECT 606
DE T
Sbjct: 178 DEPT 181
|
Length = 530 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 32/193 (16%)
Query: 463 NLTLKVE---PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-VGSDLNKEIFYV 518
+ TLK++ I G +G+GKS+L R + GL G I G V D K+I
Sbjct: 12 DFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLP 71
Query: 519 PQRPYTAVG------------TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
PQ+ +G +R+ L + L + E + ELL + L++LL+R
Sbjct: 72 PQQ--RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRIS--VDELLDLLGLDHLLNR 127
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 626
YP +LS GE+QR+ +AR +P+ +LDE SA+ + + +++ +
Sbjct: 128 YP--------AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK 179
Query: 627 S----CITISHRP 635
+ I ++H
Sbjct: 180 NLNIPVIFVTHDL 192
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 25/153 (16%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
+++++L V+ G GPNG+GK++ +++ GL SG I G N E
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIE------ 69
Query: 521 RPYTAVGTLRD-QLIYP-LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE 578
+G L + YP LT+ E L + ++ ++ +LD + D
Sbjct: 70 -ALRRIGALIEAPGFYPNLTA---RENLRLLARLLGIRKKRIDEVLD------VVGLKDS 119
Query: 579 -------LSLGEQQRLGMARLFYHKPKFAILDE 604
SLG +QRLG+A P ILDE
Sbjct: 120 AKKKVKGFSLGMKQRLGIALALLGNPDLLILDE 152
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKP--GVGSDL 511
+L L+ + G + I GPNG+GK+SL R+L GL +G + +P +
Sbjct: 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEY 72
Query: 512 NKEIFYVPQRP-----YTAVGTLR--DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
++++ Y+ +P TA+ LR +L P + E L G+ E +
Sbjct: 73 HQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGL------AGFEDVP 126
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
R LS G+Q+R+ +ARL+ + ILDE
Sbjct: 127 VRQ-----------LSAGQQRRVALARLWLTRAPLWILDE 155
|
Length = 204 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 34/186 (18%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+E + V P G ++N+ L + PG + I GP+G+GKS+L R + L SG I
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61
Query: 505 PGV------GSDLNK---EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHG------ 549
G G L K I + Q Y LI LT + V HG
Sbjct: 62 EGTDITKLRGKKLRKLRRRIGMIFQH-Y--------NLIERLTVLENV---LHGRLGYKP 109
Query: 550 ---GMVELLKNVDLE---YLLDRYP-PEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602
++ D E L+R +K D+LS G+QQR+ +AR +P +
Sbjct: 110 TWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILA 169
Query: 603 DECTSA 608
DE ++
Sbjct: 170 DEPIAS 175
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 4e-09
Identities = 54/215 (25%), Positives = 82/215 (38%), Gaps = 31/215 (14%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IEF V P G ++ + + + G + + GP+G+GKS+L +++ SG I
Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60
Query: 505 PGVG-SDLNKEIFYVPQRPY--TAVGT-LRD-QLIYPLTSDQEV----EPLTHGGMV--- 552
G SDL PY +G +D +L+ + V E
Sbjct: 61 NGQDVSDLRGR-----AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK 115
Query: 553 ---ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
L+ V L + P ELS GEQQR+ +AR + P I DE T +
Sbjct: 116 RVPAALELVGLSHKHRALP--------AELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167
Query: 610 TTDMEERFC---AKVRAMGTSCITISHRPALVAFH 641
D K+ GT+ + +H LV
Sbjct: 168 DPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTT 202
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 4e-09
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 37/181 (20%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
++ +++L +E G + + GP+GSGKS+L R + GL SG I G DL
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGE--DLTDLED 69
Query: 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWG 576
+P LR ++ Q+ H + +L+N+
Sbjct: 70 ELP--------PLRRRIGMVF---QDFALFPH---LTVLENI-------ALG-------- 100
Query: 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSA---VTTDMEERFCAKVRAM-GTSCITIS 632
LS G+QQR+ +AR P +LDE TSA +T ++A G + + ++
Sbjct: 101 --LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVT 158
Query: 633 H 633
H
Sbjct: 159 H 159
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 35/176 (19%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV-GSDLN---KEIF 516
+++++L + G + + GP+GSGK++L R++ GL SG I G +D+ + +
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVG 77
Query: 517 YVPQ-----RPYT-----AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
+V Q R T A G LR + + E+ H ELLK V L++L DR
Sbjct: 78 FVFQHYALFRHMTVFDNVAFG-LRVKPRSERPPEAEIRAKVH----ELLKLVQLDWLADR 132
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 622
YP + LS G++QR+ +AR +PK +LDE A+ AKVR
Sbjct: 133 YPAQ--------LSGGQRQRVALARALAVEPKVLLLDEPFGALD--------AKVR 172
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 4e-09
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 28/158 (17%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKE------ 514
+ ++L+VE G + + G NG+GK++L + + GL SG I G D+
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGE--DITGLPPHERA 76
Query: 515 ---IFYVPQRPYTAVGTLRDQLIYPLTSDQE---VEPLTHGGMVELLKNVDLEYLLDRYP 568
I YVP+ R I+P + +E + + DLE + + +P
Sbjct: 77 RLGIAYVPEG--------RR--IFPRLTVEENLLLGAYARRDKEA--QERDLEEVYELFP 124
Query: 569 PEKEI--NWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
KE LS GEQQ L +AR +PK +LDE
Sbjct: 125 RLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDE 162
|
Length = 237 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 5e-09
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 29/173 (16%)
Query: 476 ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP--QRPYTAV------- 526
+ GP+G GK++L R+L G SG I G ++ VP R V
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGE------DVTNVPPHLRHINMVFQSYALF 54
Query: 527 --GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQ 584
T+ + + + L + ++E L+ V LE DR P +LS G+Q
Sbjct: 55 PHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKP--------HQLSGGQQ 106
Query: 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM----GTSCITISH 633
QR+ +AR KPK +LDE SA+ + ++ +++ + G + + ++H
Sbjct: 107 QRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-09
Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 28/225 (12%)
Query: 445 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG- 500
+E ++ P+G VE ++L + G + I G +GSGKS+L +LG L SG
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 501 -HIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGM------- 551
+A V + L+ + +R + R L+ LT+ Q VE P + G+
Sbjct: 65 YRVAGQDV-ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLL 123
Query: 552 --VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
ELL+ + LE ++ Y P +LS G+QQR+ +AR + + + DE T A+
Sbjct: 124 RAQELLQRLGLEDRVE-YQP-------SQLSGGQQQRVSIARALMNGGQVILADEPTGAL 175
Query: 610 TTDMEERFCA---KVRAMGTSCITISHRPALVAFHDVVLSL-DGE 650
+ E A ++R G + I ++H P + A + V+ + DGE
Sbjct: 176 DSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGE 220
|
Length = 648 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 6e-09
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 427 DKSPQRNGSRNYFSEANYIEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKS 485
+K Q N +R + + + FS + VTP +++N++ K+E G L + G GSGKS
Sbjct: 411 EKIKQNNKARKQPNGDDGLFFSNFSLYVTP----VLKNISFKLEKGQLLAVAGSTGSGKS 466
Query: 486 SLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP 545
SL ++ G G I G I + PQ + GT++D +I+ L+ D+
Sbjct: 467 SLLMMIMGELEPSEGKIKHSG-------RISFSPQTSWIMPGTIKDNIIFGLSYDEY--- 516
Query: 546 LTHGGMVELLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAIL 602
++K LE + +P + + G+ LS G++ R+ +AR Y +L
Sbjct: 517 ----RYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLL 572
Query: 603 D 603
D
Sbjct: 573 D 573
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 7e-09
Identities = 46/164 (28%), Positives = 68/164 (41%), Gaps = 41/164 (25%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG---------------HIAKP 505
+ ++L V G + + G NG+GK++L + + GL P SG A+
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARA 75
Query: 506 GVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP-LTSDQEVEPLTHGGMVELLKNV--DLEY 562
G+G YVP+ + I+P LT + E L G LE
Sbjct: 76 GIG--------YVPE----------GRRIFPELTVE---ENLLLGAYARRRAKRKARLER 114
Query: 563 LLDRYPPEKEI--NWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+ + +P KE LS GEQQ L +AR +PK +LDE
Sbjct: 115 VYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 8e-09
Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 26/200 (13%)
Query: 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN-KEIFYVPQR--- 521
L + G L + GPNG+GK++L R + GL P G + G + I YVPQR
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 522 ----PYTAVGTL---RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 574
P + T+ R I L + + + L+ V L L DR
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVAD---FAAVRDALRRVGLTELADRPV------ 111
Query: 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV---TTDMEERFCAKVRAMGTSCITI 631
ELS G++QR+ +AR +P +LDE + + T ++ ++ GT+ +
Sbjct: 112 --GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT 169
Query: 632 SHR-PALVAFHDVVLSLDGE 650
+H +A D V+ L+G
Sbjct: 170 THDLAQAMATCDRVVLLNGR 189
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 9e-09
Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 16/201 (7%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSS----LFRVL---GGLWPLVSGHIAKPGVGSD 510
++++ ++ + + G + I G G+GKSS LFR+ G + +IAK G+ D
Sbjct: 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGL-HD 1357
Query: 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD-LEYLLDRYPP 569
L +I +PQ P G+LR L P + + E + L V L LD
Sbjct: 1358 LRFKITIIPQDPVLFSGSLRMNL-DPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECA 1416
Query: 570 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSC- 628
E G+ LS+G++Q + +AR K K +LDE T+AV + + + +R C
Sbjct: 1417 EG----GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCT 1472
Query: 629 -ITISHRPALVAFHDVVLSLD 648
+TI+HR + + V+ LD
Sbjct: 1473 VLTIAHRLNTIMDYTRVIVLD 1493
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 49/197 (24%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV-----GSDLNK 513
+++NL+L+++ G + + G +GSGKS+L ++L G G I GV L+
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSS 75
Query: 514 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI 573
I + QRPY TLR+
Sbjct: 76 LISVLNQRPYLFDTTLRN------------------------------------------ 93
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITI 631
N G S GE+QRL +AR+ +LDE T + E + + + + + I I
Sbjct: 94 NLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWI 153
Query: 632 SHRPALVAFHDVVLSLD 648
+H + D +L L+
Sbjct: 154 THHLTGIEHMDKILFLE 170
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-08
Identities = 65/249 (26%), Positives = 110/249 (44%), Gaps = 29/249 (11%)
Query: 411 DRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEP 470
+R+ ELM D Q+ G+ + ++ I+ V N++++N+ L V
Sbjct: 316 ERVFELM---------DGPRQQYGNDDRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPS 366
Query: 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG------VGSDLNKEIFYVPQRPYT 524
+ + G GSGKS+L +L G +PL G I G S L + + V Q P
Sbjct: 367 RGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVV 426
Query: 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE---LSL 581
T + L D ++ + + L+ V L L P G++ LS+
Sbjct: 427 LADTFLANVT--LGRD-----ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV 479
Query: 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE---RFCAKVRAMGTSCITISHRPALV 638
G++Q L +AR+ P+ ILDE T+ + + E+ + A VR T+ + I+HR + +
Sbjct: 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREH-TTLVVIAHRLSTI 538
Query: 639 AFHDVVLSL 647
D +L L
Sbjct: 539 VEADTILVL 547
|
Length = 592 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 1e-08
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA---KVRAMGTSCITISHR 634
LS+GE+Q + +AR + ILDE T+A+T ER ++RA G + I ISHR
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 35/217 (16%)
Query: 438 YFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL 497
S IE GV + V+++ + L V G L I G +GSGKS+L R++ GL
Sbjct: 2 SASPEPLIEVRGV-TKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP 60
Query: 498 VSGHI-----AKPGVGSDLNKEIF----YVPQRP--YTAVGTLRDQLIYPLTSDQEV-EP 545
G I P + + EI + Q+ ++++ T+ + + +PL ++ E
Sbjct: 61 DKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSL-TVFENVAFPLREHTKLPES 119
Query: 546 LTHGGMVELLKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMAR--------LFYHK 596
L ++ L+ V L D YP ELS G ++R+ +AR LF +
Sbjct: 120 LIRELVLMKLELVGLRGAAADLYP--------SELSGGMRKRVALARAIALDPELLFLDE 171
Query: 597 PKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISH 633
P + LD ++ V ++ A+G + I ++H
Sbjct: 172 P-TSGLDPISAGVIDELIREL---NDALGLTVIMVTH 204
|
Length = 263 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 28/203 (13%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN---- 512
G ++V+ + + PGS + GPNGSGKS+L R+L G +G + G DL+
Sbjct: 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL--AGVDLHGLSR 70
Query: 513 ----KEIFYVPQRPYTAVG-TLRDQLIY---PLTSDQEVEPLTHGGMV-ELLKNVDLEYL 563
+ + V Q TAV T+RD + P S + +V L +L +L
Sbjct: 71 RARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL 130
Query: 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623
DR + LS GE+QR+ +AR +PK +LDE T+ + + A VR
Sbjct: 131 ADR-------DM-STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRE 182
Query: 624 MGTSCITISHRPALVAFHDVVLS 646
+ + +T+ + A HD+ L+
Sbjct: 183 LAATGVTV-----VAALHDLNLA 200
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 51/174 (29%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-------------- 502
G +VE+++L V G + + GPNG+GK++ F ++ G+ P +G+I
Sbjct: 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA 74
Query: 503 -AKPGVGSDLNKEIFYVPQRP-----------YTAVGTLRDQLIYPLTSDQEVEPLTHGG 550
A+ G+G Y+PQ AV +RD L+++Q +
Sbjct: 75 RARRGIG--------YLPQEASIFRRLSVYDNLMAVLQIRDD----LSAEQREDR----- 117
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
EL++ +E+L D + G LS GE++R+ +AR PKF +LDE
Sbjct: 118 ANELMEEFHIEHLRD--------SMGQSLSGGERRRVEIARALAANPKFILLDE 163
|
Length = 241 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM---GTSCITISHR 634
+LS G++QR+ +AR P +LDE TS + ER +R + G + I ++H
Sbjct: 80 QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139
Query: 635 PALVAFH-DVVLSLD 648
P L D V+ L
Sbjct: 140 PELAELAADRVIVLK 154
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-08
Identities = 69/276 (25%), Positives = 113/276 (40%), Gaps = 27/276 (9%)
Query: 390 FQSLGTLSISSRRLNRLSGYADRIHELMVISREL-SIEDKSPQRNGSRNYFSEANY---I 445
F TL I RL+++ + +++ E +ED P +
Sbjct: 278 FVGFATLLIG--RLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAV 335
Query: 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 505
EF V VE+++ + +PG + I GP G+GKS+L +L ++ SG I
Sbjct: 336 EFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILID 395
Query: 506 GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKN 557
G + L + I V Q ++ D + P +D+E M +
Sbjct: 396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEE--------MRAAAER 447
Query: 558 VDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
++R P + G+ +LS GE+QRL +AR P ILDE TSA+ + E
Sbjct: 448 AQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETE 507
Query: 615 ERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
+ A + + G + I+HR + V D +L D
Sbjct: 508 AKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFD 543
|
Length = 588 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 2e-08
Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 64/162 (39%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IE + T G +L+++++L + PG + + G NG+GKS+L +++ G
Sbjct: 1 IELENLSK-TYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG----------- 48
Query: 505 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
E+EP G+V V + Y
Sbjct: 49 -------------------------------------ELEP--DEGIVTWGSTVKIGYF- 68
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
++LS GE+ RL +A+L P +LDE T
Sbjct: 69 ------------EQLSGGEKMRLALAKLLLENPNLLLLDEPT 98
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 3e-08
Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 27/222 (12%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-------AKPGVGSDLN 512
++ L+ V P + + G G+GKSS+ L + L G I AK G+ +DL
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGL-TDLR 1309
Query: 513 KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP--PE 570
+ + +PQ P GT+R I P + + + E L+ ++ ++DR P +
Sbjct: 1310 RVLSIIPQSPVLFSGTVRFN-IDPFSEHND------ADLWEALERAHIKDVIDRNPFGLD 1362
Query: 571 KEINWGDE-LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSC- 628
E++ G E S+G++Q L +AR + K +LDE T++V + +R SC
Sbjct: 1363 AEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCT 1422
Query: 629 -ITISHRPALVAFHDVVLSLDGEGEWRVHD------KRDGSS 663
+ I+HR + D +L L G+ +D RD S+
Sbjct: 1423 MLVIAHRLNTIIDCDKILVLSS-GQVLEYDSPQELLSRDTSA 1463
|
Length = 1495 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 3e-08
Identities = 60/249 (24%), Positives = 104/249 (41%), Gaps = 54/249 (21%)
Query: 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---------- 496
F GVK + + + L+V PG + + G NG+GKS+L ++L G++P
Sbjct: 11 FGGVKAL--------DGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYW 62
Query: 497 ----LVSGHIA---KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP--LTSDQEVEPLT 547
L + +I + G+ +++E+ VP+ L +++ P +
Sbjct: 63 SGSPLKASNIRDTERAGI-VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNA----- 116
Query: 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
M KN+ E LD + + + G+QQ + +A+ + + ILDE +S
Sbjct: 117 ---MYLRAKNLLRELQLDADNVTRPVG---DYGGGQQQLVEIAKALNKQARLLILDEPSS 170
Query: 608 AVTTDMEERFCAKVR---AMGTSCITISHRPALV-AFHDVVLSLDGEGEWRVHDKRDGSS 663
++T E +R A G +C+ ISH+ V A D + + RDG
Sbjct: 171 SLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVI-----------RDGQH 219
Query: 664 VVTKSGINM 672
V TK M
Sbjct: 220 VATKDMSTM 228
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-08
Identities = 50/192 (26%), Positives = 74/192 (38%), Gaps = 38/192 (19%)
Query: 428 KSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSL 487
K P GS N+F V+ +++ ++ G + G NG+GKS+
Sbjct: 18 KEPGLKGSLNHFFHRKERSIEAVQ-----------DISFEIPKGEIVGFLGANGAGKSTT 66
Query: 488 FRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEP 545
++L GL SG + G +E + R V + QL + P EV
Sbjct: 67 LKMLTGLLLPTSGKVRVNGKDPFRRREEY---LRSIGLVMGQKLQLWWDLPALDSLEVLK 123
Query: 546 L-----------THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594
L + E+L DLE L ++P K LSLG++ R +A
Sbjct: 124 LIYEIPDDEFAERLDFLTEIL---DLEGFL-KWPVRK-------LSLGQRMRAELAAALL 172
Query: 595 HKPKFAILDECT 606
H PK LDE T
Sbjct: 173 HPPKVLFLDEPT 184
|
Length = 325 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 4e-08
Identities = 53/214 (24%), Positives = 83/214 (38%), Gaps = 44/214 (20%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 518
V++++L L +E G I G +GSGKS+L ++G L SG + G +
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNG---QETPPLNSK 68
Query: 519 PQRPYTAVGTLRDQLIY-----PLTSDQEVE-----PLTHGG---------MVELLKNVD 559
+ R++L Y L ++ VE L + E L+ V
Sbjct: 69 KASKF-----RREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVG 123
Query: 560 LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER--- 616
L L + ELS GEQQR+ +AR P + DE T ++ D + R
Sbjct: 124 LNLKLKQKI--------YELSGGEQQRVALARAILKPPPLILADEPTGSL--DPKNRDEV 173
Query: 617 ---FCAKVRAMGTSCITISHRPALVAFHDVVLSL 647
G + I ++H P + D V+ L
Sbjct: 174 LDLLLELNDE-GKTIIIVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 5e-08
Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 68/223 (30%)
Query: 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 505
F GVK + +N++LKV G + + G NG+GKS+L +VL G++P G
Sbjct: 14 TFGGVKAL--------DNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP--HG----- 58
Query: 506 GVGSDLNKEIFYVPQRPYTAVGTLRDQ------LIYPLTSDQEV---------------E 544
EI + + A +RD +I+ QE+
Sbjct: 59 ----TYEGEIIFEGE-ELQA-SNIRDTERAGIAIIH-----QELALVKELSVLENIFLGN 107
Query: 545 PLTHGGMV----------ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594
+T GG++ +LL + L+ ++ P L LG+QQ + +A+
Sbjct: 108 EITPGGIMDYDAMYLRAQKLLAQLKLD--INPATPVG------NLGLGQQQLVEIAKALN 159
Query: 595 HKPKFAILDECTSAVT---TDMEERFCAKVRAMGTSCITISHR 634
+ + ILDE T+++T T + ++A G +CI ISH+
Sbjct: 160 KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHK 202
|
Length = 506 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 6e-08
Identities = 48/153 (31%), Positives = 68/153 (44%), Gaps = 23/153 (15%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKPGVGSDLNKEIFY 517
V N++L V S + GPNG+GKS+L +++ G+ SG I P DL+K
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSL 75
Query: 518 VPQRPYTAVGTLRDQLIYPLT----SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI 573
+ P T R+ L T D ++ E+L VDL + K
Sbjct: 76 IESPPLYENLTARENLKVHTTLLGLPDSRID--------EVLNIVDLTNTGKK--KAK-- 123
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
+ SLG +QRLG+A + PK ILDE T
Sbjct: 124 ----QFSLGMKQRLGIAIALLNHPKLLILDEPT 152
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 7e-08
Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 50/196 (25%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVG-SDLNK 513
G +++ + L ++ G + GPNGSGKS+L + + G + + G I G +DL
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP 71
Query: 514 E------IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRY 567
E IF Q P E+ + + L+ V+
Sbjct: 72 EERARLGIFLAFQYPP------------------EIPGVK---NADFLRYVN-------- 102
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD---MEERFCAKVRAM 624
+ S GE++R + +L +P AILDE S + D + K+R
Sbjct: 103 ---------EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE 153
Query: 625 GTSCITISHRPALVAF 640
G S + I+H L+ +
Sbjct: 154 GKSVLIITHYQRLLDY 169
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 7e-08
Identities = 57/199 (28%), Positives = 86/199 (43%), Gaps = 32/199 (16%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD---------L 511
VE ++ + PG L + G +GSGKS+ R L L G I G D L
Sbjct: 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQAL 399
Query: 512 NKEIFYVPQRPYTAVG---TLRDQLIYPLTSDQEVEPLTHGG-----MVELLKNVDLEYL 563
++I ++ Q PY ++ T+ D ++ PL V L G + LL+ V L
Sbjct: 400 RRDIQFIFQDPYASLDPRQTVGDSIMEPL----RVHGLLPGKAAAARVAWLLERVGLL-- 453
Query: 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-- 621
PE + E S G++QR+ +AR PK I DE SA+ + + +
Sbjct: 454 -----PEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD 508
Query: 622 --RAMGTSCITISHRPALV 638
R G + + ISH A+V
Sbjct: 509 LQRDFGIAYLFISHDMAVV 527
|
Length = 623 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 7e-08
Identities = 42/193 (21%), Positives = 72/193 (37%), Gaps = 44/193 (22%)
Query: 440 SEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 499
+ + G +E+++L + G +++ GP+G GK++L ++ G
Sbjct: 6 VSHLSLSYEGK------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR 59
Query: 500 GHIAKPGVGSDLNKEIFYVPQRPYTAVGTLR------DQLIYPLTSDQEVE-PLTHGGM- 551
G I G R G R + L+ L V L G+
Sbjct: 60 GSIQLNG--------------RRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIE 105
Query: 552 --------VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILD 603
++L V LE +Y W +LS G +QR+G+AR +P+ +LD
Sbjct: 106 KAQRREIAHQMLALVGLEGAEHKYI------W--QLSGGMRQRVGIARALAVEPQLLLLD 157
Query: 604 ECTSAVTTDMEER 616
E A+ E+
Sbjct: 158 EPFGALDALTREQ 170
|
Length = 259 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 7e-08
Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 29/192 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G V++++L + G + G +G GKS+L R+L G +G I GV DL+
Sbjct: 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGV--DLS---- 84
Query: 517 YVP--QRPYTAV---------GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD 565
+VP QRP + T+ + + L D+ + + E+L V ++
Sbjct: 85 HVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK 144
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV---- 621
R P +LS G++QR+ +AR +PK +LDE A+ + +R +V
Sbjct: 145 RKP--------HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDIL 196
Query: 622 RAMGTSCITISH 633
+G +C+ ++H
Sbjct: 197 ERVGVTCVMVTH 208
|
Length = 377 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 8e-08
Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 40/199 (20%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
+++++L ++ G + + GP+G+GKS+L R++ GL +G I + + ++ +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR---LNGRVLFDVSNLAV 74
Query: 521 RPYTAVG------------TLRDQLIYPLT------SDQEVEPLTHGGMVELLKNVDLEY 562
R VG T+ D + + L S+ E+ ELL+ V LE
Sbjct: 75 RD-RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE----ELLRLVQLEG 129
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA----VTTDMEERFC 618
L DRYP + LS G++QR+ +AR +PK +LDE A V ++ R+
Sbjct: 130 LADRYPAQ--------LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL-RRWL 180
Query: 619 AKVRA-MGTSCITISHRPA 636
K+ +G + + ++H
Sbjct: 181 RKLHDRLGVTTVFVTHDQE 199
|
Length = 345 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 8e-08
Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 37/213 (17%)
Query: 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
+E G+ P G V ++++L V+ G + G NG+GKS+L ++L GL+ SG I
Sbjct: 3 PALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 503 ------AKPGVGSDLNKE-IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELL 555
+ D + I V Q L+ LT E + G
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHF---------MLVPTLTV---AENIILGLEPSKG 109
Query: 556 KNVD-------LEYLLDRY----PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+D ++ L +RY P+ ++ +LS+GEQQR+ + + Y + ILDE
Sbjct: 110 GLIDRRQARARIKELSERYGLPVDPDAKVA---DLSVGEQQRVEILKALYRGARLLILDE 166
Query: 605 CTSAVTTDMEERFCAKVR---AMGTSCITISHR 634
T+ +T + +R A G + I I+H+
Sbjct: 167 PTAVLTPQEADELFEILRRLAAEGKTIIFITHK 199
|
Length = 501 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 9e-08
Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 29/191 (15%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 518
V+ ++ V+PG + GPNG+GK++ R+L GL +G G D+ KE
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGF--DVVKEPAEA 76
Query: 519 PQRPYTAVGTLRDQL-IYP-LTSDQEVEPLT----------HGGMVELLKNVDLEYLLDR 566
+R +G + D +Y LT+ + +E + EL + +E LLDR
Sbjct: 77 RRR----LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR 132
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA---VTTDMEERFCAKVRA 623
S G +Q++ +AR H P +LDE T+ + T F ++RA
Sbjct: 133 R--------VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA 184
Query: 624 MGTSCITISHR 634
+G + +H
Sbjct: 185 LGKCILFSTHI 195
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 1e-07
Identities = 55/256 (21%), Positives = 107/256 (41%), Gaps = 35/256 (13%)
Query: 358 FFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELM 417
G+L P + + LR +++ +L + ++S +R+ L +RI
Sbjct: 547 LLGGDLTP-ARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERI---- 601
Query: 418 VISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLIT 477
+++ ++ +P + YFS K PT + ++ L++ GS + I
Sbjct: 602 -LAQNPPLQPGAPAISIKNGYFS-------WDSKTSKPT----LSDINLEIPVGSLVAIV 649
Query: 478 GPNGSGKSSLFR-VLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP 536
G G GK+SL +LG L + + + + YVPQ + T+R+ +++
Sbjct: 650 GGTGEGKTSLISAMLGELSHAETSSV-------VIRGSVAYVPQVSWIFNATVRENILF- 701
Query: 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE---LSLGEQQRLGMARLF 593
+ E + +++ L++ LD P G+ +S G++QR+ MAR
Sbjct: 702 ---GSDFESERYWRAIDV---TALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV 755
Query: 594 YHKPKFAILDECTSAV 609
Y I D+ SA+
Sbjct: 756 YSNSDIYIFDDPLSAL 771
|
Length = 1495 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 34/160 (21%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKE-------- 514
++L+V G + G NG GK++L + L GL P+ SG I G D+ K
Sbjct: 18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGE--DITKLPPHERARA 75
Query: 515 -IFYVPQRPYTAVGTLRDQLIYPLTSDQE-----VEPLTHGGMVELLKNVDLEYLLDRYP 568
I YVPQ + I+P + +E + L + + + + + +P
Sbjct: 76 GIAYVPQ----------GREIFPRLTVEENLLTGLAALPRRS-----RKIP-DEIYELFP 119
Query: 569 PEKEI--NWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
KE+ G +LS G+QQ+L +AR +PK +LDE T
Sbjct: 120 VLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 1e-07
Identities = 55/174 (31%), Positives = 79/174 (45%), Gaps = 39/174 (22%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSD 510
G L+++++L + PG + I GPNG+GKS+L R L G SG + G ++
Sbjct: 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAE 73
Query: 511 LNKEIFYVPQR-----PYTA---VGTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLE 561
L + +PQ P+T V R P S E + L L VDL
Sbjct: 74 LARRRAVLPQHSSLSFPFTVEEVVAMGR----APHGLSRAEDDALVA----AALAQVDLA 125
Query: 562 YLLDR-YPPEKEINWGDELSLGEQQRLGMARLF------YHKPKFAILDECTSA 608
+L R YP +LS GEQQR+ +AR+ P++ +LDE TSA
Sbjct: 126 HLAGRDYP---------QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSA 170
|
Length = 258 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 28/163 (17%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HIA----------KPGVGSD 510
++TL G L++ GP+G+GKSSL RVL L SG +IA +
Sbjct: 20 DITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79
Query: 511 LNKEIFYVPQR----PYTAVGTLRDQLI-YPLTSDQEVEPLTHGGMVELLKNVDLEYLLD 565
L + + V Q+ P+ T++ LI P + +LL+ + L+ D
Sbjct: 80 LRRNVGMVFQQYNLWPHL---TVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD 136
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
R+P LS G+QQR+ +AR +P+ + DE T+A
Sbjct: 137 RFPLH--------LSGGQQQRVAIARALMMEPQVLLFDEPTAA 171
|
Length = 242 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 60/209 (28%), Positives = 95/209 (45%), Gaps = 29/209 (13%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKE 514
+ +++ V+ G L I G NGSGKS+ R++ GL SG I G D+ +
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82
Query: 515 IFYVPQRPYTA-VG-TLRDQLIYPLTSDQEVEPLTHGGMV----ELLKNVDLEYLLDRYP 568
I V Q P VG T+ D + + L E + + H M E L+ V ++ +R P
Sbjct: 83 IGMVFQNPDNQFVGATVEDDVAFGL----ENKGIPHEEMKERVNEALELVGMQDFKEREP 138
Query: 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM---- 624
LS G++QR+ +A +PK ILDE TS + + ++ +
Sbjct: 139 A--------RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDY 190
Query: 625 GTSCITISHRPALVAFHDVVLSL-DGEGE 652
+ I+I+H VA D VL + +G+ E
Sbjct: 191 QMTVISITHDLDEVALSDRVLVMKNGQVE 219
|
Length = 279 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 36/190 (18%)
Query: 465 TLKVEPGSN-----LLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP 519
L+VE G + I GPNG GK++ ++L G+ KP GS+ + ++ Y P
Sbjct: 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGV--------IKPDEGSEEDLKVSYKP 407
Query: 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE 578
Q GT+ L+ E++K ++LE LL+R DE
Sbjct: 408 QYISPDYDGTVE-DLLRSAIRSAFGSSYFK---TEIVKPLNLEDLLERPV--------DE 455
Query: 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF-CAKV--RAMGTSCITISHRP 635
LS GE QR+ +A + +LDE ++ + D+E+R AKV R + + T
Sbjct: 456 LSGGELQRVAIAAALSREADLYLLDEPSAYL--DVEQRIIVAKVIRRFIENNEKT----- 508
Query: 636 ALVAFHDVVL 645
ALV HD+ +
Sbjct: 509 ALVVDHDIYM 518
|
Length = 591 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 1e-07
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 40/212 (18%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IE G+ + G +++ + L V G L I GP+GSGKS+L R++ GL SG +
Sbjct: 1 IELRGL-TKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI 59
Query: 505 PG--VGSDLNKEIFYVPQRPYTAVG------------TLRDQLIYPLT-----SDQEVEP 545
G + E++ + +R +G T+ + + +PL S++E+
Sbjct: 60 DGEDISGLSEAELYRLRRR----MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIRE 115
Query: 546 LTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605
+ +E L+ V L D YP ELS G ++R+ +AR P+ + DE
Sbjct: 116 IV----LEKLEAVGLRGAEDLYP--------AELSGGMKKRVALARALALDPELLLYDEP 163
Query: 606 TSA---VTTDMEERFCAKV-RAMGTSCITISH 633
T+ + + + + + + +G + I ++H
Sbjct: 164 TAGLDPIASGVIDDLIRSLKKELGLTSIMVTH 195
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 30/204 (14%)
Query: 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN------------K 513
L V+ G + + G +GSGKS+L +L GL SG ++ VG L+ K
Sbjct: 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSL--VGQPLHQMDEEARAKLRAK 88
Query: 514 EIFYVPQRPYTAVGTL--RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEK 571
+ +V Q + + TL + + P E + G LL+ + L LD P +
Sbjct: 89 HVGFVFQS-FMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQ- 146
Query: 572 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV----RAMGTS 627
LS GEQQR+ +AR F +P DE T + ++ + R GT+
Sbjct: 147 -------LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTT 199
Query: 628 CITISHRPALVAFHDVVLSL-DGE 650
I ++H L A D L L +G+
Sbjct: 200 LILVTHDLQLAARCDRRLRLVNGQ 223
|
Length = 228 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 61/213 (28%), Positives = 95/213 (44%), Gaps = 32/213 (15%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKS-SLFRVLGGLWP---LVSGHIAKPGVGSDLN--- 512
LV++L L ++ G L + G +GSGKS + +LG L P SG I G L
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGR--PLLPLS 58
Query: 513 ---KEIFYVPQRPYTA---VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL---EYL 563
+ I + Q P TA + T+ + I L S ++ ++E L+ V L E +
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEV 118
Query: 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623
L +YP +LS G QR+ +A +P F I DE T+ + + R +R
Sbjct: 119 LKKYP--------FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 624 M----GTSCITISHRPALVAF--HDVVLSLDGE 650
+ GT + I+H +VA +V + DG
Sbjct: 171 LRQLFGTGILLITHDLGVVARIADEVAVMDDGR 203
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 41/192 (21%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
++ L V G + + GP+GSGKS++ R+L L P+ G I G ++++++P
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEG------EQLYHMPG 69
Query: 521 R-----PYTA--VGTLRDQL--------IYPLTS--DQEVE-PLTHGGM---------VE 553
R P + +R+++ ++P + D E P+ GM +E
Sbjct: 70 RNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAME 129
Query: 554 LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
LL V L D P +LS G+QQR+ +AR +PK + DE TSA+ ++
Sbjct: 130 LLDMVGLADKADHMPA--------QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPEL 181
Query: 614 EERFCAKVRAMG 625
+R +
Sbjct: 182 VGEVLNVIRRLA 193
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 45/217 (20%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKE----- 514
+ N++L ++ G + + G +G GKS+L R+L GL G+++ G + LN+
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAF 87
Query: 515 ---IFYVPQRPYTAVG---TLRDQLIYP---LTSDQEVEPLTHGGMVELLKNVDL-EYLL 564
I V Q +AV T+R+ + P L S + E L E+L+ VDL + +L
Sbjct: 88 RRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARAS--EMLRAVDLDDSVL 145
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS-----------AVTTDM 613
D+ PP +LS G+ QR+ +AR +PK ILDE S + +
Sbjct: 146 DKRPP--------QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKL 197
Query: 614 EERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDG 649
+++F GT+C+ I+H LV F V+ +D
Sbjct: 198 QQQF-------GTACLFITHDLRLVERFCQRVMVMDN 227
|
Length = 268 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 54/176 (30%), Positives = 77/176 (43%), Gaps = 38/176 (21%)
Query: 456 TGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-AKPGVGS-DL- 511
TG VL V N +L +E G ++ G +GSGKS+L R + GL P+ G + K G GS D+
Sbjct: 34 TGLVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVA 93
Query: 512 -----------NKEIFYVPQR----PYTAVGTLRDQLIYPL----TSDQEVEPLTHGGMV 552
+ V Q+ P+ T+ + + + L E
Sbjct: 94 NCDAATLRRLRTHRVSMVFQQFALLPWR---TVEENVAFGLEMQGMPKAERRKRVD---- 146
Query: 553 ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
E L+ V L DR P ELS G QQR+G+AR F + ++DE SA
Sbjct: 147 EQLELVGLAQWADRKP--------GELSGGMQQRVGLARAFATEAPILLMDEPFSA 194
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 28/178 (15%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+E +K P G ++ + K E G + + GPNG+GKS+LF G+ SG +
Sbjct: 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLI 61
Query: 505 PGVGSDL-NKEIFYVPQRPYTAVGTL----RDQLIYPLTSDQEVE--PLTHG-------- 549
G K + V + VG + DQL P T +++V PL G
Sbjct: 62 KGEPIKYDKKSLLEVRKT----VGIVFQNPDDQLFAP-TVEEDVAFGPLNLGLSKEEVEK 116
Query: 550 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
+ E LK V +E + PP LS G+++R+ +A + KP+ +LDE TS
Sbjct: 117 RVKEALKAVGMEG-FENKPPH-------HLSGGQKKRVAIAGILAMKPEIIVLDEPTS 166
|
Length = 275 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 19/194 (9%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--DLNK----E 514
++N++L V G + ++GP+G+GKS+L + L + SG I G+ DL + E
Sbjct: 24 LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPRE 83
Query: 515 IFYVPQRPYTAVGTLRDQLIYPLTSDQEV--EPLTHGGMVELLKNVDLEYLLDRYP-PEK 571
+ V ++ V + P S EV EPL G+ LL R PE+
Sbjct: 84 VLEVRRKTIGYVSQFLRVI--PRVSALEVVAEPLLERGVPREAARARARELLARLNIPER 141
Query: 572 EINWG---DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER---FCAKVRAMG 625
W S GEQQR+ +AR F +LDE T+++ + A+ +A G
Sbjct: 142 L--WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARG 199
Query: 626 TSCITISHRPALVA 639
+ I I H +
Sbjct: 200 AALIGIFHDEEVRE 213
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 54/211 (25%), Positives = 84/211 (39%), Gaps = 42/211 (19%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-------------- 502
G V +++L+V PG + + GPNG+GK++LF ++ G + SG +
Sbjct: 16 GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHR 75
Query: 503 -AKPGVG-SDLNKEIF---------YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM 551
A+ G+ + +F V L L P +E E
Sbjct: 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARL---GLSGLLGRPRARKEEREARERAR- 131
Query: 552 VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTT 611
ELL+ V L L DR LS G+Q+RL +AR +PK +LDE + +
Sbjct: 132 -ELLEFVGLGELADRP--------AGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNP 182
Query: 612 DMEERFCAKVRA----MGTSCITISHRPALV 638
+ E +R G + + I H LV
Sbjct: 183 EETEELAELIRELRDRGGVTILLIEHDMKLV 213
|
Length = 250 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 3e-07
Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 44/210 (20%)
Query: 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI--- 502
F GVK + +N+ LKV P S + G NG+GKS+L + L G++ SG I
Sbjct: 7 SFPGVKAL--------DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQ 58
Query: 503 AKP------------GVGSDLNKEIFYVPQRPYTAVGTLRDQLI---YPLTSDQEVEPLT 547
K G+ S +++E+ V QR ++ D + YP +
Sbjct: 59 GKEIDFKSSKEALENGI-SMVHQELNLVLQR------SVMDNMWLGRYPTKG----MFVD 107
Query: 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
M K + E +D P K LS+ + Q + +A+ F + K I+DE TS
Sbjct: 108 QDKMYRDTKAIFDELDIDIDPRAKVAT----LSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163
Query: 608 AVT-TDMEERF--CAKVRAMGTSCITISHR 634
++T ++ F K++ G + ISH+
Sbjct: 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHK 193
|
Length = 491 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 4e-07
Identities = 63/240 (26%), Positives = 106/240 (44%), Gaps = 28/240 (11%)
Query: 425 IEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVEN-LTLKVEPGSNLLITGPNGSG 483
IE SP +A + F GV++ G LV ++ ++ P + I G GSG
Sbjct: 1291 IEPASPTSAAPHPV--QAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSG 1348
Query: 484 KSSLFRVLGGLWPLVSGHIAKPG--VGS----DLNKEIFYVPQRPYTAVGTLRDQLIYPL 537
KS+L + + G I G +G+ +L ++ +PQ P GT+R
Sbjct: 1349 KSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVR------- 1401
Query: 538 TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE------INWGDELSLGEQQRLGMAR 591
Q V+P E+ ++L L +R E E + G S+G++Q + MAR
Sbjct: 1402 ---QNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMAR 1458
Query: 592 LFYHK-PKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
K F ++DE T+ + ++ + A V + + ITI+HR VA +D ++ +D
Sbjct: 1459 ALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMD 1518
|
Length = 1560 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 52/172 (30%), Positives = 74/172 (43%), Gaps = 31/172 (18%)
Query: 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GS 509
G L++ ++L + PG L I GPNG+GKS+L + L G SG + GV
Sbjct: 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPE 71
Query: 510 DLNKEIFYVPQR-----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE-LLKNVDLEYL 563
+L + +PQ P+T ++ I P S + EP + L DL L
Sbjct: 72 ELARHRAVLPQNSSLAFPFTVQEVVQMGRI-PHRSGR--EPEEDERIAAQALAATDLSGL 128
Query: 564 LDR-YPPEKEINWGDELSLGEQQRLGMARLFYH------KPKFAILDECTSA 608
R Y LS GEQQR+ +AR+ ++ LDE TSA
Sbjct: 129 AGRDYR---------TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171
|
Length = 259 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-07
Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 38/193 (19%)
Query: 476 ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-VGSDLNKEIFYVPQRPYTAVG------- 527
I G +GSGK++L R++ GL G I G D K IF P++ +G
Sbjct: 28 IFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK--RRIGYVFQEAR 85
Query: 528 -----TLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSL 581
++R L Y + + ++ ++ELL + +LL R P LS
Sbjct: 86 LFPHLSVRGNLRYGMKRARPSERRISFERVIELL---GIGHLLGRLP--------GRLSG 134
Query: 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER-----FCAKVRA-MGTSCITISHRP 635
GE+QR+ + R P+ ++DE +A+ D + + ++ A G + +SH
Sbjct: 135 GEKQRVAIGRALLSSPRLLLMDEPLAAL--DDPRKYEILPYLERLHAEFGIPILYVSHSL 192
Query: 636 ---ALVAFHDVVL 645
+A VVL
Sbjct: 193 QEVLRLADRVVVL 205
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 5e-07
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 29/160 (18%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV----GSDLNK 513
N +++NL L ++ G+ + + GP+G GK+++ R++ GL G I G S +
Sbjct: 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR 78
Query: 514 EIFYVPQR----PYTAVGT-----LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
+I V Q P+ ++G L+ + Q V+ E L+ VDL
Sbjct: 79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVK--------EALELVDLAGFE 130
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
DRY D++S G+QQR+ +AR KPK + DE
Sbjct: 131 DRYV--------DQISGGQQQRVALARALILKPKVLLFDE 162
|
Length = 351 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 33/180 (18%)
Query: 445 IEFSGVKV-VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
I+ V + N ++N++ ++ G + I G NGSGKS++ ++L GL SG I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 504 KPGVGSDLNKE-----------IFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGM 551
G+ ++KE IF P + +G T+ D + + L E + + M
Sbjct: 68 IDGI--TISKENLKEIRKKIGIIFQNPDNQF--IGATVEDDIAFGL----ENKKVPPKKM 119
Query: 552 ----VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
+L K V +E LD+ P LS G++QR+ +A + P+ I DE TS
Sbjct: 120 KDIIDDLAKKVGMEDYLDKEP--------QNLSGGQKQRVAIASVLALNPEIIIFDESTS 171
|
Length = 271 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 5e-07
Identities = 44/213 (20%), Positives = 87/213 (40%), Gaps = 34/213 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
N ++++L+L++E G L + G +G GK++L R + G +G + + ++++
Sbjct: 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK-AAGLTGRIAIA---DRDLT 72
Query: 517 YVPQRPYT-AVG------------TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL 563
+ P P+ + + D + + L + + + + + LK V L
Sbjct: 73 HAP--PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDA 130
Query: 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623
P + LS G QQR+ +AR +P +LDE SA+ ++ ++ A
Sbjct: 131 AAHLPAQ--------LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAA 182
Query: 624 MGTS-------CITISHRPALVAFHDVVLSLDG 649
+ C+T AL + DG
Sbjct: 183 LHEELPELTILCVTHDQDDALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 7e-07
Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 28/187 (14%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA--KPGVGSDL---NKE 514
L++ ++ + G L + G NG+GK++L +++ GL G I + + DL K+
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75
Query: 515 IFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 570
+ +V R PY TLR+ +Y + G+ EL + LE+L+D YP
Sbjct: 76 LCFVGHRSGINPYL---TLRENCLYDIHFSP-----GAVGITELCRLFSLEHLID-YP-- 124
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV---RAMGTS 627
LS G+++++ + RL+ K K +LDE A+ K+ RA G +
Sbjct: 125 -----CGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 628 CITISHR 634
+ SH+
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 8e-07
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 23/166 (13%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP------LVSGHIAKPGVGSDLNKE 514
V+ ++ + G L I G NGSGKS+L ++L G+ L++ H G S +K
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 515 IFYVPQRPYTA------VGTLRDQLIYPLTSDQEVEPLTHGGMV-ELLKNVDLEYLLDRY 567
I + Q P T+ +G + D +PL + ++EP + E L+ V L
Sbjct: 89 IRMIFQDPNTSLNPRLRIGQILD---FPLRLNTDLEPEQRRKQIFETLRMVGL------L 139
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
P L+ G++QR+ +AR +PK I DE +++ M
Sbjct: 140 PDHANYY-PHMLAPGQKQRVALARALILRPKIIIADEALASLDMSM 184
|
Length = 267 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 9e-07
Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 42/170 (24%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HIAKPGVGSDLNKE 514
V ++ +V G + GPNG+GK++ ++L L SG +A G D+ +E
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA----GHDVVRE 67
Query: 515 -------IFYVPQRPYTAVGTLRDQL-----------IYPLTSDQEVEPLTHGGMVELLK 556
I V Q ++ D+L +Y + + E + ELL
Sbjct: 68 PREVRRRIGIVFQDL-----SVDDELTGWENLYIHARLYGVPGAERRERID-----ELLD 117
Query: 557 NVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
V L DR S G ++RL +AR H+P+ LDE T
Sbjct: 118 FVGLLEAADRLV--------KTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 9e-07
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 30/161 (18%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-----DLNKEI 515
++ ++ + + G + GPNG+GKS+ +++ G P SG + G ++ + I
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNI 77
Query: 516 FYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPL----THGGMVELLKNVDLEYLLDR--YP 568
Y+P+ PL D V E L GM L +E +++
Sbjct: 78 GYLPEHN-------------PLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR 124
Query: 569 PE--KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
PE K+I +LS G +QR+G+A+ H PK ILDE T+
Sbjct: 125 PEQHKKIG---QLSKGYRQRVGLAQALIHDPKVLILDEPTT 162
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 9e-07
Identities = 47/155 (30%), Positives = 68/155 (43%), Gaps = 26/155 (16%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFR-VLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521
N+ L V GS + I G G GK+SL +LG L P + G + YVPQ
Sbjct: 635 NINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG-------TVAYVPQV 687
Query: 522 PYTAVGTLRDQLIYPLTSDQE-------VEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 574
+ T+RD +++ D E V L H ++LL DL + +R
Sbjct: 688 SWIFNATVRDNILFGSPFDPERYERAIDVTALQHD--LDLLPGGDLTEIGER-------- 737
Query: 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
G +S G++QR+ MAR Y I D+ SA+
Sbjct: 738 -GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL 771
|
Length = 1622 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 1e-06
Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 23/166 (13%)
Query: 454 TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS--GHIAKPGVGSD- 510
T G ++++L+ VE G + + G GSGKS+L L L L+S G I GV +
Sbjct: 1228 TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTL---LSALLRLLSTEGEIQIDGVSWNS 1284
Query: 511 -----LNKEIFYVPQRPYTAVGTLRDQL-IYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
K +PQ+ + GT R L Y SD+E+ + + V L+ ++
Sbjct: 1285 VTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVA--------EEVGLKSVI 1336
Query: 565 DRYPPEKE---INWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
+++P + + ++ G LS G +Q + +AR K K +LDE ++
Sbjct: 1337 EQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSA 1382
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 28/186 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---------AKP-- 505
G ++ + L+V+PG + I GP+GSGK++L R + L +G I A+
Sbjct: 15 GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLS 74
Query: 506 ---GVGSDLNKEIFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558
G+ L + + +V Q P+ V L + + P+ E + ELL V
Sbjct: 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTV--LENIIEGPVIVKGEPKEEATARARELLAKV 132
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFC 618
L YP LS G+QQR+ +AR +P+ + DE TSA+ ++
Sbjct: 133 GLAGKETSYP--------RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 619 AKVRAM 624
+R +
Sbjct: 185 NTIRQL 190
|
Length = 250 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 19/161 (11%)
Query: 454 TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD--- 510
T GN ++EN++ + PG + + G GSGKS+L L G I GV +
Sbjct: 13 TEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVP 71
Query: 511 ---LNKEIFYVPQRPYTAVGTLRDQL-IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
K +PQ+ + GT R L Y SD+E+ + + V L+ ++++
Sbjct: 72 LQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVA--------EEVGLKSVIEQ 123
Query: 567 YPPEKE---INWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+P + + ++ G LS G +Q + +AR K K +LDE
Sbjct: 124 FPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDE 164
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-06
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 47/211 (22%)
Query: 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG 506
F GVK + L V PG + + G NG+GKS++ +VL G++ +G I
Sbjct: 14 FPGVKAL--------SGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILY-- 63
Query: 507 VGSDLNKEI-FYVPQRPYTA-VGTLRDQL--IYPLTSDQEV----EPLTHGGMVE----- 553
L KE+ F P+ A +G + +L I LT + + E + G ++
Sbjct: 64 ----LGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMY 119
Query: 554 -----LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
LL ++L R+ +K + ELS+GEQQ + +A++ + K I+DE T A
Sbjct: 120 AEADKLLARLNL-----RFSSDKLVG---ELSIGEQQMVEIAKVLSFESKVIIMDEPTDA 171
Query: 609 VT-TDMEERFCAKV----RAMGTSCITISHR 634
+T T+ E F +V ++ G + ISHR
Sbjct: 172 LTDTETESLF--RVIRELKSQGRGIVYISHR 200
|
Length = 501 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 2e-06
Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 43/240 (17%)
Query: 379 LRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISREL---SIEDKSPQRNGS 435
LR+ +++ + S+ S+S +RL + + EL SIE + + G
Sbjct: 586 LRFPLNILPMVISSIVQASVSLKRL-----------RIFLSHEELEPDSIERR-TIKPGE 633
Query: 436 RNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW 495
N + N F+ + + PT N +T + G+ + + G G GKSSL L
Sbjct: 634 GNSITVHN-ATFTWARDLPPTLN----GITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 688
Query: 496 PLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE-- 553
V GH+ G + YVPQ+ + +LR+ +++ + + + ++E
Sbjct: 689 DKVEGHVHMKG-------SVAYVPQQAWIQNDSLRENILF----GKALNEKYYQQVLEAC 737
Query: 554 -LLKNVDLEYLL--DRYP-PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
LL DLE L DR EK +N LS G++QR+ +AR Y + D+ SAV
Sbjct: 738 ALLP--DLEILPSGDRTEIGEKGVN----LSGGQKQRVSLARAVYSNADIYLFDDPLSAV 791
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-06
Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 20/197 (10%)
Query: 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-------AKPGVGSDLNKEIF 516
L+ ++ P + I G G+GKSS+ L + L G I +K G+ DL K +
Sbjct: 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGL-MDLRKVLG 1316
Query: 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPP--EKEIN 574
+PQ P GT+R L P + + + E L+ L+ ++ R + E++
Sbjct: 1317 IIPQAPVLFSGTVRFNL-DPFNEHNDAD------LWESLERAHLKDVIRRNSLGLDAEVS 1369
Query: 575 WGDE-LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSC--ITI 631
E S+G++Q L +AR + K +LDE T+AV + +R SC + I
Sbjct: 1370 EAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 1429
Query: 632 SHRPALVAFHDVVLSLD 648
+HR + D +L LD
Sbjct: 1430 AHRLNTIIDCDRILVLD 1446
|
Length = 1622 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 36/167 (21%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH-------IAKPGVGSDLNK 513
+ N+ S + + GPNG+GKS+LFR G+ SG I K + ++ K
Sbjct: 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENI-REVRK 78
Query: 514 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-----------EPLTHGGMVELLKNVDLEY 562
+ V Q P D I+ T +Q++ E + H + L + LE
Sbjct: 79 FVGLVFQNP--------DDQIFSPTVEQDIAFGPINLGLDEETVAH-RVSSALHMLGLEE 129
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
L DR P LS GE++R+ +A + +P+ +LDE T+ +
Sbjct: 130 LRDRVP--------HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGL 168
|
Length = 277 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 54/206 (26%), Positives = 80/206 (38%), Gaps = 46/206 (22%)
Query: 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG--LWPLVSGHIAKPGVGSDLN------- 512
+ + L V+ G I GPNGSGKS+L + + G + + SG I G DL
Sbjct: 17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFK--GQDLLELEPDER 74
Query: 513 --KEIFYVPQRP------------YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558
+F Q P +A+ R + L + L +
Sbjct: 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKL----LKAKLALL 130
Query: 559 DL-EYLLDRYPPEKEINWGDELSLGEQQR---LGMARLFYHKPKFAILDECTSAVTTDME 614
+ E L+R +N G S GE++R L MA L +PK AILDE S + D
Sbjct: 131 GMDEEFLNRS-----VNEG--FSGGEKKRNEILQMALL---EPKLAILDEIDSGLDIDAL 180
Query: 615 ERFCA---KVRAMGTSCITISHRPAL 637
+ ++R S + I+H L
Sbjct: 181 KIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-06
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 38/206 (18%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN-KEIFYVP 519
V+ ++ +E G L + G +GSGKS + GL P S A P + +++
Sbjct: 26 VKGISFDIEAGETLALVGESGSGKSVTALSILGLLP--SPAAAHPSGSILFDGEDLLAAS 83
Query: 520 QRPYTAVGTLRDQLIY--PLTS--------DQEVEPLT-HGGM---------VELLKNVD 559
+R V + +I+ P+TS Q E L H G+ +ELL+ V
Sbjct: 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVG 143
Query: 560 L---EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--VTTDME 614
+ E LD YP ELS G++QR+ +A ++P I DE T+A VT +
Sbjct: 144 IPEPEKRLDAYP--------HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQ 195
Query: 615 --ERFCAKVRAMGTSCITISHRPALV 638
+ +G + + I+H +V
Sbjct: 196 ILDLLKELQAELGMAILFITHDLGIV 221
|
Length = 534 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 40/173 (23%)
Query: 457 GNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNK 513
G+V + N++ + G + I G +GSGKS+L +LGGL SG + G ++K
Sbjct: 18 GSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFN--GQPMSK 75
Query: 514 EIFYVPQRPYTAVGTLRDQ---LIYP-------LTSDQEVE-PLTHGGM---------VE 553
A LR+Q IY T+ + V PL G +E
Sbjct: 76 -------LSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALE 128
Query: 554 LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
+L V LE+ + P ELS GE+QR+ +AR + P+ + DE T
Sbjct: 129 MLAAVGLEHRANHRP--------SELSGGERQRVAIARALVNNPRLVLADEPT 173
|
Length = 233 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 42/202 (20%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
I + V V G+ + + + V GS + G NGSGKS+LF+ L G L SG I+
Sbjct: 7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISI 66
Query: 505 PG--VGSDLNKE-IFYVPQRP------------------YTAVGTLRDQLIYPLTSDQEV 543
G L K + YVPQ Y +G LR D+++
Sbjct: 67 LGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLR----RAKKRDRQI 122
Query: 544 EPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602
+ L VD +E+ R+ ++I ELS G+++R+ +AR + + +L
Sbjct: 123 -------VTAALARVDMVEF---RH---RQIG---ELSGGQKKRVFLARAIAQQGQVILL 166
Query: 603 DECTSAVTTDMEERFCAKVRAM 624
DE + V E R + +R +
Sbjct: 167 DEPFTGVDVKTEARIISLLREL 188
|
Length = 272 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-06
Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 48/191 (25%)
Query: 451 KVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH-IAKPGVGS 509
KVV P +L ++++L PG+ + + G NG+GKS+L R++ G+ +G PG+
Sbjct: 12 KVVPPKKEIL-KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGI-- 68
Query: 510 DLNKEIFYVPQRPY------------TAVGTLRDQL-----IYPLTS--DQEVEPL--TH 548
++ Y+PQ P V ++D L I + D +++ L
Sbjct: 69 ----KVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQ 124
Query: 549 GGMVELLKNVD-------LEYLLD--RYPPEKEINWGD----ELSLGEQQRLGMARLFYH 595
+ E++ D LE +D R PP D +LS GE++R+ + RL
Sbjct: 125 AELQEIIDAADAWDLDRKLEIAMDALRCPP------WDADVTKLSGGERRRVALCRLLLS 178
Query: 596 KPKFAILDECT 606
KP +LDE T
Sbjct: 179 KPDMLLLDEPT 189
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 4e-06
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 33/190 (17%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP- 519
+++++L V+ G + + GP+G GK++L R++ GL +G I + G ++I +P
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGG------RDITRLPP 73
Query: 520 -QRPYTAVGTLRDQLIYP-LTSDQEVE-PLTHGGM---------VELLKNVDLEYLLDRY 567
+R Y V + ++P LT + L + GM ELL V L +Y
Sbjct: 74 QKRDYGIV--FQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKY 131
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--- 624
P +LS G+QQR+ +AR P +LDE SA+ + E ++R +
Sbjct: 132 P--------GQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR 183
Query: 625 -GTSCITISH 633
G + I ++H
Sbjct: 184 LGVTTIMVTH 193
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 37/197 (18%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG-LWP--LVSGHIAKPGVGSDLNK 513
G+ L+ N+ + G + + GP+G GKS+L + G L +G + +
Sbjct: 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNE------Q 67
Query: 514 EIFYVP--QRPYTAVGTL-RDQLIYPLTSDQE-----VEPLTHG-----GMVELLKNVDL 560
+ +P QR +G L +D L++P S + + G L+ L
Sbjct: 68 RLDMLPAAQR---QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGL 124
Query: 561 EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF--- 617
+ + P LS G++ R+ + R +PK +LDE S + + ++F
Sbjct: 125 DGAFHQDP--------ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQW 176
Query: 618 -CAKVRAMGTSCITISH 633
++VRA G + ++H
Sbjct: 177 VFSEVRAAGIPTVQVTH 193
|
Length = 213 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 6e-06
Identities = 55/194 (28%), Positives = 80/194 (41%), Gaps = 44/194 (22%)
Query: 445 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
IE + V P G + N++L + G + G +G+GKS+L R + L SG
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 502 IAKPGV------GSDLNKE------IF----YVPQRPYTAVGTLRDQLIYPL----TSDQ 541
+ G +L K IF + R T+ D + PL T
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR------TVFDNVALPLELAGTPKA 115
Query: 542 EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601
E++ ELL+ V L DRYP + LS G++QR+ +AR PK +
Sbjct: 116 EIKARVT----ELLELVGLSDKADRYPAQ--------LSGGQKQRVAIARALASNPKVLL 163
Query: 602 LDECTSAV---TTD 612
DE TSA+ TT
Sbjct: 164 CDEATSALDPATTR 177
|
Length = 343 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 7e-06
Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 25/190 (13%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 518
++ NL L+++PG + + G +G+GK++L R++ G +P G +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS 456
Query: 519 PQRPYTAVGTLRDQLI----YPLTSDQEVEPLTHGGMVELLKNVDL--EYLLDRYPPEKE 572
P + I T D VE+L L L R
Sbjct: 457 ALIPGEYEPEFGEVTILEHLRSKTGDLNAA-------VEILNRAGLSDAVLYRRKF---- 505
Query: 573 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV----RAMGTSC 628
ELS G+++R +A+L +P ++DE + + R K+ R G +
Sbjct: 506 ----SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITL 561
Query: 629 ITISHRPALV 638
I ++HRP +
Sbjct: 562 IVVTHRPEVG 571
|
Length = 593 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 9e-06
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 36/163 (22%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---------------AKP 505
V +++L+V G + + GPNG+GK++ F ++ GL SG I A+
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79
Query: 506 GVGSDLNKEIFYVPQRPYTAVG-TLRDQLIYPL---TSDQEVEPLTHGGMVELLKNVDLE 561
G+G Y+PQ T+ D ++ L D + + LL+ +
Sbjct: 80 GIG--------YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEE-LDALLEEFHIT 130
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+L D LS GE++R+ +AR PKF +LDE
Sbjct: 131 HLRDSK--------AYSLSGGERRRVEIARALAANPKFILLDE 165
|
Length = 243 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 46/222 (20%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD------- 510
V+ ++L + G L + G +GSGKS+L L L P G I G D
Sbjct: 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEM 358
Query: 511 --LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV--EPL-THGG----------MVELL 555
L + + V Q PY G+L P + ++ E L H ++E L
Sbjct: 359 RPLRRRMQVVFQDPY---GSLS-----PRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410
Query: 556 KNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
+ V L +RYP E S G++QR+ +AR KP+ +LDE TSA+ ++
Sbjct: 411 EEVGLDPATRNRYP--------HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQ 462
Query: 615 ERFCAKVRAM----GTSCITISHRPALV-AF-HDVVLSLDGE 650
+ +R + G S + ISH A+V A H V++ DG+
Sbjct: 463 AQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504
|
Length = 534 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 56/182 (30%), Positives = 80/182 (43%), Gaps = 33/182 (18%)
Query: 453 VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG--LWPLVSGHIAKPGVGSD 510
+ N +++ L L + G I GPNGSGKS+L +V+ G + ++ G I G S
Sbjct: 15 ASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGE-SI 73
Query: 511 LNKE--------IFYVPQRPYTAVG-TLRDQLIYPLTSDQ------EVEPLTHGGMV-EL 554
L+ E IF Q P G + D L S + E++PL ++ E
Sbjct: 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEK 133
Query: 555 LKNVDL-EYLLDRYPPEKEINWGDELSLGEQQR---LGMARLFYHKPKFAILDECTSAVT 610
LK V + L R +N G S GE++R L MA L + AILDE S +
Sbjct: 134 LKLVGMDPSFLSRN-----VNEG--FSGGEKKRNEILQMALL---DSELAILDETDSGLD 183
Query: 611 TD 612
D
Sbjct: 184 ID 185
|
Length = 252 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 21/199 (10%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG------VGSDLNKEIF 516
++ + G + I G +G+GKS++ R+L + + SG I G L + I
Sbjct: 281 GISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG 340
Query: 517 YVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 574
VPQ T+ + Y P + +EV + + + P +
Sbjct: 341 IVPQDTVLFNDTIAYNIKYGRPDATAEEVG--------AAAEAAQIHDFIQSLPEGYDTG 392
Query: 575 WGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR--AMGTSCI 629
G+ +LS GE+QR+ +AR P ILDE TSA+ T E+ A +R + G + +
Sbjct: 393 VGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTL 452
Query: 630 TISHRPALVAFHDVVLSLD 648
I+HR + + D ++ LD
Sbjct: 453 VIAHRLSTIIDADEIIVLD 471
|
Length = 497 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 30/210 (14%)
Query: 444 YIE--FSGVKVVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500
YIE S +++ TG L V++ +L +E G +I G +GSGKS++ R+L L G
Sbjct: 24 YIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83
Query: 501 HIAKPGVGSDLNK----EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM----- 551
+ GV D+ K E+ V ++ V + + D + G+
Sbjct: 84 QVLIDGV--DIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEER 141
Query: 552 ----VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
++ L+ V LE YP DELS G +QR+G+AR P ++DE S
Sbjct: 142 REKALDALRQVGLENYAHSYP--------DELSGGMRQRVGLARALAINPDILLMDEAFS 193
Query: 608 A----VTTDMEERFCAKVRAMGTSCITISH 633
A + T+M++ + + ISH
Sbjct: 194 ALDPLIRTEMQDELVKLQAKHQRTIVFISH 223
|
Length = 400 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 37/211 (17%)
Query: 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG----- 500
E GVKV G + + ++ LK+ + GP+G GKS+L R + L+ G
Sbjct: 22 EVEGVKVFY-GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEG 80
Query: 501 -------HIAKPGVGS-DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 552
+I + S L +++ V QRP ++ + + + P +G
Sbjct: 81 RLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAF--------APRANG--- 129
Query: 553 ELLKNVD--LEYLLDRYPPEKEIN-----WGDELSLGEQQRLGMARLFYHKPKFAILDEC 605
N+D +E L R +E+ G LS G+QQRL +AR KP ++DE
Sbjct: 130 -YKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEP 188
Query: 606 TSA---VTTDMEERFCAKVRAMGTSCITISH 633
SA ++T E C +++ T I ++H
Sbjct: 189 CSALDPISTRQVEELCLELKEQYT-IIMVTH 218
|
Length = 274 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 451 KVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HIAKPGVG 508
K V++L+L V G + G NG+GK++ ++L G SG +I +
Sbjct: 8 KTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIR 67
Query: 509 SDLNK---EIFYVPQ 520
+D + Y PQ
Sbjct: 68 TDRKAARQSLGYCPQ 82
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 42/173 (24%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVL---GGLWPLVS--------GH-IAKPGVGS- 509
+++L P + GP+GSGKS+L R + L P V+ GH I P +
Sbjct: 23 SVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82
Query: 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPP 569
DL KEI V Q+P ++ + ++Y L LK + + +LD
Sbjct: 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLR----------------LKGIKDKQVLDEAVE 126
Query: 570 E--KEINWGDE-----------LSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
+ K + DE LS G+QQR+ +AR+ PK +LDE TSA+
Sbjct: 127 KSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSAL 179
|
Length = 252 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 25/184 (13%)
Query: 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTA 525
L V G + I GP+G+GKS+L ++ G SG I +D + QRP +
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV----NDQSHTGLAPYQRPVSM 74
Query: 526 VG---------TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWG 576
+ T+R + L ++ +V+ + V + LDR P
Sbjct: 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-------- 126
Query: 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT----SCITIS 632
++LS G++QR+ +AR +LDE SA+ + E A V+ + + + + ++
Sbjct: 127 EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVT 186
Query: 633 HRPA 636
H +
Sbjct: 187 HHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 43/205 (20%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL---VSGHIAKPGVGSDLNKEIF 516
++++ + V+PG +L+ G GSG S+L + L V G I G+ E +
Sbjct: 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81
Query: 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWG 576
++IY D LT V L++ L G
Sbjct: 82 -------------PGEIIYVSEEDVHFPTLT----VRET----LDFALRCK--------G 112
Query: 577 DE----LSLGEQQRLGMARLFYHKPKFAILDECT----SAVTTDMEERFCAKVRAMGTSC 628
+E +S GE++R+ +A + D T S+ ++ + + T+
Sbjct: 113 NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTT 172
Query: 629 ITISHRPALVAFH---DVVLSLDGE 650
++ + + V++ +G
Sbjct: 173 FVSLYQASDEIYDLFDKVLVLYEGR 197
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 36/202 (17%)
Query: 454 TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----- 508
TP ++N+ +++E G + + G GSGKS+L + L GL SG I GV
Sbjct: 16 TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKK 75
Query: 509 ---SDLNKEIFYVPQRP-YTAVGTLRDQLIY------PLT---SDQEVEPLTHGGMVELL 555
SD+ K++ V Q P Y L ++ I P+ S++E+E M ++
Sbjct: 76 VKLSDIRKKVGLVFQYPEY----QLFEETIEKDIAFGPINLGLSEEEIENRVKRAM-NIV 130
Query: 556 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
+D E D+ P ELS G+++R+ +A + +PK ILDE T+ + +
Sbjct: 131 G-LDYEDYKDKSP--------FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRD 181
Query: 616 RFCAKVRAM----GTSCITISH 633
K++ + + I +SH
Sbjct: 182 EILNKIKELHKEYNMTIILVSH 203
|
Length = 287 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 57/232 (24%), Positives = 101/232 (43%), Gaps = 27/232 (11%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
I F V G ++ +T + PG +TG +G+GKS+L +++ G+ +G I
Sbjct: 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61
Query: 505 PG--VGSDLNKEIFYVPQRP---YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE------ 553
G + N+E+ ++ ++ + L D+ +Y D PL G
Sbjct: 62 SGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVY----DNVAIPLIIAGASGDDIRRR 117
Query: 554 LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
+ +D LLD K N+ +LS GEQQR+G+AR +KP + DE T + +
Sbjct: 118 VSAALDKVGLLD-----KAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172
Query: 614 EE---RFCAKVRAMGTSCITISHRPALVAFHDV-VLSLDGEGEWRVHDKRDG 661
E R + +G + + +H L++ +L+L + +H G
Sbjct: 173 SEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTL---SDGHLHGGVGG 221
|
Length = 222 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 60/231 (25%), Positives = 97/231 (41%), Gaps = 57/231 (24%)
Query: 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL----- 497
N IE +KV VL + + L++ + + GP+GSGKS+L RV L L
Sbjct: 2 NKIEIRDLKVSFGQVEVL-DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 498 VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRD--QLIYPLTSDQEVEPLTHGGMVELL 555
VSG + G ++IF + V LR Q+++ Q P+ + + +
Sbjct: 61 VSGEVYLDG------QDIFKMD------VIELRRRVQMVF-----QIPNPIPN---LSIF 100
Query: 556 KNVDLEYLLDRYPPEKE-----INWGDE------------------LSLGEQQRLGMARL 592
+NV L L+R K+ + W E LS G+QQRL +AR
Sbjct: 101 ENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160
Query: 593 FYHKPKFAILDECTSAV----TTDMEERFCAKVRAMGTSCITISHRPALVA 639
+P+ + DE T+ + T +E F + M + + ++H P A
Sbjct: 161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKKDM--TIVLVTHFPQQAA 209
|
Length = 250 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
+++++ +V G + + G NG+GKS+L R+L G++P SG +
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV 79
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 25/169 (14%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP------LVSGHIAKPGVGSDLNKE 514
V+ L+ + G L I G NGSGKS+L ++L G+ L+ H G S ++
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQR 88
Query: 515 IFYVPQRPYTA------VGTLRDQLIYPLTSDQEVEPLT-HGGMVELLKNVDLEYLLDRY 567
I + Q P T+ + + D +PL + ++EP ++E L+ V L
Sbjct: 89 IRMIFQDPSTSLNPRQRISQILD---FPLRLNTDLEPEQREKQIIETLRQVGLL------ 139
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
P+ + L+ G++QRLG+AR +PK I DE +++ DM R
Sbjct: 140 -PDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASL--DMSMR 185
|
Length = 267 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 24/174 (13%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSS---LFRVLGGLWP--------LVSGH-IAKPGVG 508
++ +++++E S + GP+G GKS+ LF + L P + G I GV
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 509 SD-LNKEIFYVPQRPYTAVGTLRDQLIYPL-TSDQEVEPLTHGGMVELLKNVDL-EYLLD 565
D L K + V QRP ++ + + Y L + + + E LK L + + D
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD 138
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEE 615
+ KE + LS G+QQRL +AR P ++DE SA+ T +EE
Sbjct: 139 KL---KESAFA--LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEE 187
|
Length = 250 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 28/224 (12%)
Query: 443 NYIEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
N +EF V P + + +++ + GS + G NGSGKS++ +++ GL L+
Sbjct: 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGL--LLPDD 61
Query: 502 IAKPGV---GSDLNKEIFY--------VPQRPYTA-VG-TLRDQLIYPLTSDQEVEPLTH 548
+ G L + + V Q P VG T+ D + + L + P
Sbjct: 62 NPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMI 121
Query: 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
+ ++L +V + +D P LS G++QR+ +A + +PK ILDE TS
Sbjct: 122 KIVRDVLADVGMLDYIDSEP--------ANLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 609 VTTDMEERFCAKVRAM----GTSCITISHRPALVAFHDVVLSLD 648
+ +E+ +R + + I+I+H D VL LD
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLD 217
|
Length = 282 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 40/180 (22%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IE + +K VL +++L + G + + GP+GSGK++L R++ GL SGHI
Sbjct: 3 IEIANIKKSFGRTQVL-NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRF 61
Query: 505 PGVGSDL------NKEIFYVPQRPYTAVG--TLRDQLIYPLTS------------DQEVE 544
G +D+ ++++ +V Q Y T+ D + + LT +V
Sbjct: 62 HG--TDVSRLHARDRKVGFVFQH-YALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKV- 117
Query: 545 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+LL+ V L +L DRYP + LS G++QR+ +AR +P+ +LDE
Sbjct: 118 -------TQLLEMVQLAHLADRYPAQ--------LSGGQKQRVALARALAVEPQILLLDE 162
|
Length = 353 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 19/147 (12%)
Query: 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---AKPGVGSDLNKEIFYVPQ 520
L V+ G LL+ G NG+GK++L RVL GL + SG I K D ++ + Y+
Sbjct: 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGH 89
Query: 521 RP--YTAVGTLRDQLIYPLTSDQEVEP-LTHGGMVELLKNVDLEYLLDRYPPEKEINWGD 577
P + TL + ++ L G + ++ E L R
Sbjct: 90 LPGLKADLSTLEN--LHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVR----------- 136
Query: 578 ELSLGEQQRLGMARLFYHKPKFAILDE 604
+LS G+++RL +ARL+ +LDE
Sbjct: 137 QLSAGQKKRLALARLWLSPAPLWLLDE 163
|
Length = 214 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 44/168 (26%), Positives = 66/168 (39%), Gaps = 44/168 (26%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH--IAKPGVGSDLNKE---- 514
V+ + KV G GPNG+GK++ R+L L SG +A G D+ +E
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVA----GYDVVREPRKV 64
Query: 515 ---IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM------------VELLKNVD 559
I VPQ ++ + LT + +E G + ELL+ +
Sbjct: 65 RRSIGIVPQYA-----SVDED----LTGRENLE--MMGRLYGLPKDEAEERAEELLELFE 113
Query: 560 LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
L DR S G ++RL +A H+P LDE T+
Sbjct: 114 LGEAADRPV--------GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 31/177 (17%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA- 503
I+ +GV + +V L+ V G + GPNG+GKS++ R++ G+ +G I
Sbjct: 42 IDLAGVSK-SYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV 100
Query: 504 ----KPGVGSDLNKEIFYVPQ-----RPYTAVGTLRDQLI----YPLTSDQEVEPLTHGG 550
P I VPQ +T R+ L+ Y S +E+E +
Sbjct: 101 LGVPVPARARLARARIGVVPQFDNLDLEFTV----RENLLVFGRYFGMSTREIEAV---- 152
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
+ LL+ LE D +LS G ++RL +AR + P+ ILDE T+
Sbjct: 153 IPSLLEFARLESKADARVS--------DLSGGMKRRLTLARALINDPQLLILDEPTT 201
|
Length = 340 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 51/194 (26%), Positives = 78/194 (40%), Gaps = 31/194 (15%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN-------- 512
+ N++L V G +++ GP+GSGKS+L R L + G I G ++
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPRE 86
Query: 513 ------KEIFYVPQ--RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
I YV Q R V L D + PL + + +LL ++L L
Sbjct: 87 VLEVRRTTIGYVSQFLRVIPRVSAL-DVVAEPLLARGVPREVARAKAADLLTRLNLPERL 145
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER-----FCA 619
P S GEQQR+ +AR F +LDE T+++ D R
Sbjct: 146 WSLAPAT-------FSGGEQQRVNIARGFIVDYPILLLDEPTASL--DATNRAVVVELIR 196
Query: 620 KVRAMGTSCITISH 633
+ +A G + + I H
Sbjct: 197 EAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 4e-05
Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 35/186 (18%)
Query: 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSL-------------FR 489
N+ + G K V+N+T+K+ I GP+G GK++L FR
Sbjct: 8 NFSAYYGEKKA-------VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 490 VLGGLWPLVSGH-IAKPGVG-SDLNKEIFYVPQRPYTAVGTLRDQLIYPL----TSDQEV 543
V G + G I P + ++ K++ V Q+P ++ D + + +
Sbjct: 61 VEGKI--YFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHK 118
Query: 544 EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILD 603
+VE +++ L D E G LS G+QQRL +AR +P+ +LD
Sbjct: 119 ----LDRIVE--ESLKKAALWDEVKSELNKP-GTRLSGGQQQRLCIARALAVEPEVILLD 171
Query: 604 ECTSAV 609
E TSA+
Sbjct: 172 EPTSAL 177
|
Length = 250 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 5e-05
Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 24/200 (12%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 518
VL+ ++++ V G ++ G GSGKS+L + L + + G + + I YV
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWA-------ERSIAYV 726
Query: 519 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL---LDRYPPEKEINW 575
PQ+ + T+R +++ D+E + DL L L+ EK +N
Sbjct: 727 PQQAWIMNATVRGNILF---FDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVN- 782
Query: 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD-----MEERFCAKVRAMGTSCIT 630
LS G++ R+ +AR Y +LD+ SA+ +EE F + G + +
Sbjct: 783 ---LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALA--GKTRVL 837
Query: 631 ISHRPALVAFHDVVLSLDGE 650
+H+ +V D V++L
Sbjct: 838 ATHQVHVVPRADYVVALGDG 857
|
Length = 1560 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 6e-05
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
+L+++L+ K+ PG + + GPNG+GKS+LFR++ G SG I
Sbjct: 334 DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 6e-05
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 35/171 (20%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG------------HIAKPGVG 508
++N+++++ S + GP+G GKS+ R L + L+ I +P V
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 509 S-DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHG-------GMVEL-LKNVD 559
+L K + V Q+P ++ D + Y P HG G+VE L++
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAY--------GPRIHGANKKDLDGVVENALRSAA 139
Query: 560 L-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
L + DR LS G+QQRL +AR KPK + DE TSA+
Sbjct: 140 LWDETSDRLKSP-----ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSAL 185
|
Length = 258 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 6e-05
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVGSDLN---KE 514
L++N++ K +PG I GP+G+GKS+L L G VSG + G D K
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKI 83
Query: 515 IFYVPQ 520
I YVPQ
Sbjct: 84 IGYVPQ 89
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 6e-05
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 35/170 (20%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG------------HIAKPGVG 508
++++ L + + GP+G GKS+L R L + L+ G +I P V
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82
Query: 509 -SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS--------DQEVE-PLTHGGMVELLKNV 558
+L + + V Q+P ++ D + Y L D+ VE L + + +K+
Sbjct: 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD- 141
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
L + LS G+QQRL +AR KP+ ++DE TSA
Sbjct: 142 ----RLHKS--------ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179
|
Length = 253 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 29/163 (17%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSD 510
V++++++L + G I GPNG+GKS+L ++ L SG I G+ +
Sbjct: 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKE 72
Query: 511 LNKEIFYVPQR-PYTAVGTLRDQLI---YP-----LTSDQEVEPLTHGGMVELLKNVDLE 561
L K++ + Q + T+RD + +P LT + + E ++ + LE
Sbjct: 73 LAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI------INEAIEYLHLE 126
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
L DRY DELS G++QR +A + + +LDE
Sbjct: 127 DLSDRYL--------DELSGGQRQRAFIAMVLAQDTDYVLLDE 161
|
Length = 252 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 60/196 (30%), Positives = 88/196 (44%), Gaps = 46/196 (23%)
Query: 465 TLKVEPGS-----NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---SDLNKEIF 516
TL+VE GS + I GPNG GK++ ++L G+ KP G +L+ +
Sbjct: 14 TLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGV--------LKPDEGDIEIELDT-VS 64
Query: 517 YVPQR---PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI 573
Y PQ Y GT+RD L+ +T D P E+ K + +E +LDR P
Sbjct: 65 YKPQYIKADYE--GTVRD-LLSSITKDFYTHPYFK---TEIAKPLQIEQILDREVP---- 114
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCIT--I 631
ELS GE QR+ +A +LDE SA D+E+R M + I
Sbjct: 115 ----ELSGGELQRVAIAACLSKDADIYLLDE-PSA-YLDVEQRL------MASKVIRRFA 162
Query: 632 SH--RPALVAFHDVVL 645
+ + A V HD+++
Sbjct: 163 ENNEKTAFVVEHDIIM 178
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 37/168 (22%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLF-----RVLGGLWPLVSGHIAKPGVGSD---L 511
++ +++L VE G + I G +GSGK++L RV GG SG I G
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGG--GTTSGQILFNGQPRKPDQF 79
Query: 512 NKEIFYVPQRPYTAVG-TLRDQLIYPLT-----------SDQEVEPLTHGGMVELLKNVD 559
K + YV Q G T+R+ L Y + VE LL+++
Sbjct: 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE-------DVLLRDLA 132
Query: 560 LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
L + +S GE++R+ +A PK ILDE TS
Sbjct: 133 LTRIGGNLVK--------GISGGERRRVSIAVQLLWDPKVLILDEPTS 172
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 7e-05
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 31/143 (21%)
Query: 476 ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-VGSDLNKEIFYVPQR------------- 521
+ GP+GSGK+SL ++ GL G I G V D K IF P++
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLF 88
Query: 522 PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSL 581
P+ V R L Y + +L+ + +E+LLDRYP LS
Sbjct: 89 PHYTV---RGNLRY------GMWKSMRAQFDQLVALLGIEHLLDRYP--------GTLSG 131
Query: 582 GEQQRLGMARLFYHKPKFAILDE 604
GE+QR+ + R P+ ++DE
Sbjct: 132 GEKQRVAIGRALLTAPELLLMDE 154
|
Length = 352 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 8e-05
Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 24/226 (10%)
Query: 441 EANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500
E ++ + G ++ + + ++ G I G NG+GKS+LF+ L G+ SG
Sbjct: 2 EDYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSG 61
Query: 501 HIAKPGVGSD--------LNKEIFYVPQRPYTAV--GTLRDQLIYPLTSDQEVEPLTHGG 550
I G D L + + V Q P + ++ + + + + E
Sbjct: 62 RILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR 121
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV- 609
+ LK +E+L D K + LS G+++R+ +A + +PK +LDE T+ +
Sbjct: 122 VDNALKRTGIEHLKD-----KPTHC---LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLD 173
Query: 610 ---TTDMEERFCAKVRAMGTSCITISHRPALVAFH-DVVLSLDGEG 651
+++ + + +G + I +H +V + D V + EG
Sbjct: 174 PMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMK-EG 218
|
Length = 283 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 8e-05
Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 28/165 (16%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---DLNKEIFY 517
V+N++L+V+ G I G +G+GK++L +++ G+ SG + VG D+ K
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVR-VGDEWVDMTKPGPD 358
Query: 518 VPQRPYTAVGTLRDQL-IYP-------LTSDQEVE-PLTHGGM--VELLKNVDL-----E 561
R +G L + +YP LT +E P M V LK V E
Sbjct: 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAE 418
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
+LD+YP DELS GE+ R+ +A++ +P+ ILDE T
Sbjct: 419 EILDKYP--------DELSEGERHRVALAQVLIKEPRIVILDEPT 455
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 62/222 (27%), Positives = 91/222 (40%), Gaps = 50/222 (22%)
Query: 445 IEFSGVKVVT--PTGNVLVE---------NLTLKVEPGS-----NLLITGPNGSGKSSLF 488
IEF + LVE + +L+VE G + I GPNG GK++
Sbjct: 324 IEFE-ERPPRDESERETLVEYPDLTKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFA 382
Query: 489 RVLGGLWPLVSGHIAKPGVGS-DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPL 546
++L G + KP G D +I Y PQ GT+ D L+ +T D
Sbjct: 383 KLLAG--------VLKPDEGEVDPELKISYKPQYIKPDYDGTVED-LLRSITDDLGSSYY 433
Query: 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
E++K + LE LLD+ +LS GE QR+ +A +LDE +
Sbjct: 434 KS----EIIKPLQLERLLDKNV--------KDLSGGELQRVAIAACLSRDADLYLLDEPS 481
Query: 607 SAVTTDMEERF-CAKV--RAMGTSCITISHRPALVAFHDVVL 645
+ + D+E+R AK R T ALV HD+ +
Sbjct: 482 AHL--DVEQRLAVAKAIRRIAEEREAT-----ALVVDHDIYM 516
|
Length = 590 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 1e-04
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
+L+++L+ + PG + I GPNG+GKS+LF+++ G SG I
Sbjct: 336 DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381
|
Length = 556 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 38/164 (23%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G +E++ L +E G L++ GP+G GK++L ++ G P G I G
Sbjct: 13 GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGK--------- 63
Query: 517 YVPQRPYTAVGTLR-----DQLIYPLTSDQE-VE-PLTHGGM---------VELLKNVDL 560
P G R ++ + P + Q+ V L G+ ++LK V L
Sbjct: 64 -----PVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGL 118
Query: 561 EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
E RY W +LS G++QR+G+AR P+ +LDE
Sbjct: 119 EGAEKRYI------W--QLSGGQRQRVGIARALAANPQLLLLDE 154
|
Length = 255 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 40/242 (16%)
Query: 439 FSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV 498
F +YI G TP ++N++ ++E GS + + G GSGKS+L + L
Sbjct: 5 FENVDYIYSPG----TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS 60
Query: 499 SGHIA------KPGVGS----DLNKEIFYVPQRPYTAV---GTLRDQLIYPLT---SDQE 542
SG I P G+ L K++ V Q P + L+D P S+ E
Sbjct: 61 SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDE 120
Query: 543 VEPLTHGGMVELLKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601
+ ++ LK V L E L+ + P ELS G+ +R+ +A + ++P+
Sbjct: 121 AKE----KALKWLKKVGLSEDLISKSP--------FELSGGQMRRVAIAGVMAYEPEILC 168
Query: 602 LDECTSAV----TTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEGEWRVH 656
LDE + + +M + F +A G + I ++H VA + D VL L+ G+ H
Sbjct: 169 LDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLE-HGKLIKH 226
Query: 657 DK 658
Sbjct: 227 AS 228
|
Length = 287 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 28/177 (15%)
Query: 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
N IE + G ++ L+L + GS + GPNG+GKS+L L G++ G
Sbjct: 2 DNIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGR 61
Query: 502 IAKPGVGSDLNKEIFY--------VPQRPYTAV--GTLRDQLIY-PLT---SDQEVEPLT 547
+ +G ++N E V Q P V T+ D + + P+ EVE
Sbjct: 62 VKV--MGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV 119
Query: 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
E LK V + D+ P LS G+++R+ +A + P +LDE
Sbjct: 120 E----EALKAVRMWDFRDKPP--------YHLSYGQKKRVAIAGVLAMDPDVIVLDE 164
|
Length = 274 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 68/229 (29%), Positives = 95/229 (41%), Gaps = 61/229 (26%)
Query: 450 VKVVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV- 507
V TP G+V V +L + G L I G +GSGKS L GL +A G
Sbjct: 20 VTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL-------LAANGRI 72
Query: 508 -GSDL--NKEIFYVPQRPYTAVGTLRDQLIY-----PLTS--------DQEVEPLT-HGG 550
GS +EI +P++ + LR + I P+TS +Q +E L H G
Sbjct: 73 GGSATFNGREILNLPEK---ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKG 129
Query: 551 M---------VELLKNVDLEYLLDRYPPE--KEIN-WGDELSLGEQQRLGMARLFYHKPK 598
M V +L V + PE K + + E S G +QR+ +A +PK
Sbjct: 130 MSKAEAFEESVRMLDAVKM--------PEARKRMKMYPHEFSGGMRQRVMIAMALLCRPK 181
Query: 599 FAILDECTSA--VT------TDMEERFCAKVRAMGTSCITISHRPALVA 639
I DE T+A VT T + E R T+ I I+H +VA
Sbjct: 182 LLIADEPTTALDVTVQAQIMTLLNEL----KREFNTAIIMITHDLGVVA 226
|
Length = 330 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 47/186 (25%), Positives = 71/186 (38%), Gaps = 27/186 (14%)
Query: 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523
L V G + I GP+G+GKS+L ++ G SG I GV D +RP
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGV--DHTASPPA--ERPV 73
Query: 524 TAVGTLRDQLIYPLTSDQEVEPLTHGG----------MVELLKNVDLEYLLDRYPPEKEI 573
+ + + L LT Q + G + V L L R P
Sbjct: 74 SMLFQ-ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG---- 128
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV----RAMGTSCI 629
ELS G++QR+ +AR + +LDE SA+ + A V + +
Sbjct: 129 ----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLL 184
Query: 630 TISHRP 635
++H P
Sbjct: 185 MVTHHP 190
|
Length = 231 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 22/192 (11%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSDLNKE 514
+ N++L V G + G +G+GKS+L R + L SG + G S+L K
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 515 ---IFYVPQR-PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 570
I + Q + T+ + PL D + + ELL V L D YP
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-- 138
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEERFCAKVRAMGT 626
LS G++QR+ +AR PK + DE TSA+ T + E R +G
Sbjct: 139 ------SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL 192
Query: 627 SCITISHRPALV 638
+ + I+H +V
Sbjct: 193 TILLITHEMDVV 204
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 42/165 (25%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---------------AKP 505
V ++L V+ G + + GPNG+GK++ F ++ GL SG I A+
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75
Query: 506 GVGSDLNKEIFYVPQRPYTAVG-TLRDQL-----IYPLTSDQEVEPLTHGGMVELLKNVD 559
G+G Y+PQ T+ + + I L+ + E L ELL+
Sbjct: 76 GIG--------YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKL-----EELLEEFH 122
Query: 560 LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+ +L LS GE++R+ +AR PKF +LDE
Sbjct: 123 ITHLRKSK--------ASSLSGGERRRVEIARALATNPKFLLLDE 159
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-04
Identities = 52/156 (33%), Positives = 73/156 (46%), Gaps = 24/156 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRV-LGGLWPLVSGHIAKPGVGSDLNKEI 515
G LV++ + +V+ G + + GPNG GK++L ++ LG L SG I G+ L E+
Sbjct: 331 GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA-DSGRIH---CGTKL--EV 384
Query: 516 FYVPQRPYTAV----GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD-RYPPE 570
Y Q + A T+ D L QEV MV L YL D + P+
Sbjct: 385 AYFDQ--HRAELDPEKTVMDNLA---EGKQEV-------MVNGRPRHVLGYLQDFLFHPK 432
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
+ + LS GE+ RL +ARLF ILDE T
Sbjct: 433 RAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPT 468
|
Length = 635 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 50/172 (29%), Positives = 73/172 (42%), Gaps = 35/172 (20%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG--VGSDLNK- 513
G L+ L+L G + G NGSGKS+L ++LG P G I + S +K
Sbjct: 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKA 82
Query: 514 ---EIFYVPQRPYTAVGTLRDQLI----YP---------LTSDQEVEPLTHGGMVELLKN 557
++ Y+PQ+ A G +L+ YP ++VE E +
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVE--------EAISL 134
Query: 558 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
V L+ L R D LS GE+QR +A L + +LDE TSA+
Sbjct: 135 VGLKPLAHRLV--------DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSAL 178
|
Length = 265 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 4e-04
Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 26/219 (11%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
I V P G +EN+ L ++ G + I G NGSGKS+L L GL G +
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61
Query: 505 PGVGS-------DLNKEIFYVPQRPYTA-VG-TLRDQLIYPLTSDQEVEPLTHGGMVELL 555
G+ + + K + V Q P T VG T+ + L + + + P +E+
Sbjct: 62 SGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG-PENLCLPP------IEIR 114
Query: 556 KNVDL---EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612
K VD E L++Y LS G+ Q + +A + +P+ I DE TS + D
Sbjct: 115 KRVDRALAEIGLEKYRHRSP----KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPD 170
Query: 613 MEERFCAKVRAM---GTSCITISHRPALVAFHDVVLSLD 648
+++ + G + + I+H + D ++ +D
Sbjct: 171 SGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMD 209
|
Length = 274 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 57/248 (22%), Positives = 96/248 (38%), Gaps = 49/248 (19%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG--HI 502
I+ S + V +++ + L V GS + + GPNG+GK++L R + G +G +
Sbjct: 4 IDVSDL-SVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLV 62
Query: 503 AKPGVGS----DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558
A V + ++ + VPQ T L+ + +V + G
Sbjct: 63 AGDDVEALSARAASRRVASVPQ------DT-------SLSFEFDVRQVVEMGRTPHRSRF 109
Query: 559 DLEYLLDRYPPEKEINWGD----------ELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
D DR E+ + LS GE+QR+ +AR +LDE T++
Sbjct: 110 DTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTAS 169
Query: 609 VTTDMEERFCAKVRAMGTSCITISHRPALVAFHD----------VVLSLDGEGEWRVHDK 658
+ + + R VR + + A+ A HD +VL DG RV
Sbjct: 170 LDINHQVRTLELVRRLVD-----DGKTAVAAIHDLDLAARYCDELVLLADG----RVRAA 220
Query: 659 RDGSSVVT 666
+ V+T
Sbjct: 221 GPPADVLT 228
|
Length = 402 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 5e-04
Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 34/196 (17%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA---------KPGVGSDL 511
++++ L V PG + G NG+GKS+L +VL G+ G I + + L
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 512 NKEIFY----------VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 561
I Y V + Y + + +E+ +L V L+
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAA----MMLLRVGLK 136
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA-- 619
LD EK N LS+ +Q L +A+ K I+DE TS++T +
Sbjct: 137 VDLD----EKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIM 188
Query: 620 -KVRAMGTSCITISHR 634
++R GT+ + ISH+
Sbjct: 189 NQLRKEGTAIVYISHK 204
|
Length = 510 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-04
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
+++ ++ G + I G NG+GKS+L +++ G++ SG +
Sbjct: 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
|
Length = 249 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 6e-04
Identities = 53/212 (25%), Positives = 80/212 (37%), Gaps = 33/212 (15%)
Query: 437 NYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP 496
F + +E V V + L ++ G L + G NGSGKS+L +L GL+
Sbjct: 315 QAFPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ 374
Query: 497 LVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGT---LRDQLIYPLTSDQEVEP------LT 547
SG I G + Y ++ ++AV T L DQL+ P + P L
Sbjct: 375 PQSGEILLDGKPVTAEQPEDY--RKLFSAVFTDFHLFDQLLGP--EGKPANPALVEKWLE 430
Query: 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
M L+ D + LS G+++RL + + +LDE
Sbjct: 431 RLKMAHKLELEDGRISNLK------------LSKGQKKRLALLLALAEERDILLLDEW-- 476
Query: 608 AVTTD-MEERFCAKV-----RAMGTSCITISH 633
A D R +V + MG + ISH
Sbjct: 477 AADQDPHFRREFYQVLLPLLQEMGKTIFAISH 508
|
Length = 547 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 7e-04
Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 30/166 (18%)
Query: 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523
++ V PG + + GPNG+GKS+LF +L L+ G I+ G DL + P+
Sbjct: 20 VSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISV--AGHDLRRA----PRAAL 73
Query: 524 TAVGTLRDQ--LIYPLTSDQEV----------EPLTHGGMVELLKNVDL-EYLLDRYPPE 570
+G + Q L L+ Q + + ELL + L E D+
Sbjct: 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKV--- 130
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616
EL+ G ++R+ +AR H+P +LDE T V D R
Sbjct: 131 ------RELNGGHRRRVEIARALLHRPALLLLDEPT--VGLDPASR 168
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 7e-04
Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 31/194 (15%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA- 503
I+ GV + V+V +L+ + G + GPNG+GKS++ R+L G+ G I
Sbjct: 5 IDLVGVSK-SYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV 63
Query: 504 ----KPGVGSDLNKEIFYVPQ-----RPYTAVGTLRDQLI----YPLTSDQEVEPLTHGG 550
P I VPQ +T R+ L+ Y S +E+E +
Sbjct: 64 LGEPVPSRARLARVAIGVVPQFDNLDPEFTV----RENLLVFGRYFGMSTREIEAV---- 115
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
+ LL+ LE D LS G ++RL +AR + P+ ILDE T+ +
Sbjct: 116 IPSLLEFARLESKADVRVA--------LLSGGMKRRLTLARALINDPQLLILDEPTTGLD 167
Query: 611 TDMEERFCAKVRAM 624
++R++
Sbjct: 168 PHARHLIWERLRSL 181
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 8e-04
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS-----GHIAKPGVG------ 508
+++N+ L + S + GP+G GKS+ R L + L+ GHI GV
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 509 --SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
+L K++ V Q+P ++ D + Y L E + VE +++ L D
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVE--ESLKAAALWDE 135
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
+K LS G+QQRL +AR P+ ++DE SA+
Sbjct: 136 V-KDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSAL 177
|
Length = 250 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 58/238 (24%), Positives = 88/238 (36%), Gaps = 60/238 (25%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV----GSDLN 512
++ +L+L++EPG + G NG+GKS+L + L G G A G LN
Sbjct: 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLN 69
Query: 513 KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP---- 568
E P A R + + P Q +P E++ LL RYP
Sbjct: 70 GE----PLAAIDAPRLARLRAVLP----QAAQPAFAFSAREIV-------LLGRYPHARR 114
Query: 569 ------PEKEINWG---------------DELSLGEQQRLGMARLFYH---------KPK 598
+ EI W LS GE R+ AR+ P+
Sbjct: 115 AGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPR 174
Query: 599 FAILDECTSAVTTDMEERFCAKVRAMG----TSCITISHRPALVAFHDVVLSLDGEGE 652
+ +LDE T+A+ + R VR + + I H P L A H +++ +G
Sbjct: 175 YLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGA 232
|
Length = 272 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 31/161 (19%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
++ ++ +E G + GPNG+GK++ ++L GL SG + G+ ++ F
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKF---L 93
Query: 521 RPYTAVGTLRDQL---------------IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD 565
R V + QL IY L + + L + ELL DLE LLD
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDE--LSELL---DLEELLD 148
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
P + +LSLG++ R +A H+P+ LDE T
Sbjct: 149 T--PVR------QLSLGQRMRAEIAAALLHEPEILFLDEPT 181
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 9e-04
Identities = 58/241 (24%), Positives = 90/241 (37%), Gaps = 63/241 (26%)
Query: 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSG--- 500
+F G +V+ +N++ +E G L I G +G+GKS L VL G+ + SG
Sbjct: 9 KFDGKEVL--------KNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 501 -HIAK-----------------PGVGSDLNKEI--FYVPQRPYTAVGTLRD----QLIYP 536
H+A P G L E F+ R Q +
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA 120
Query: 537 LTSDQEV-----EPLTHGG---------MVELLKNVDLEYLLDRYPPEKEINWGDELSLG 582
L D V E L G V+L++ V L + + + +LS G
Sbjct: 121 LYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRI--------THIARDLSGG 172
Query: 583 EQQRLGMARLFYHKPKFAILDECTSAV---TTDM-EERFCAKVRAMGTSCITISHRPALV 638
E+QR+ +AR +P + DE T + T + V+A G S + SH P ++
Sbjct: 173 EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232
Query: 639 A 639
Sbjct: 233 E 233
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 9e-04
Identities = 49/199 (24%), Positives = 77/199 (38%), Gaps = 41/199 (20%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG----------------HIAK 504
+ +L+ V+PG ++ GPNG+GK++L V+ G G IA+
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 505 PGVGSDLNKEIFY----VPQRPYTAVG---TLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557
G+G K + V + A+ ++ L L +++ + ELL
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR------IDELLAT 134
Query: 558 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF 617
+ L DR LS G++Q L + L PK +LDE A TD E
Sbjct: 135 IGLGDERDRL--------AALLSHGQKQWLEIGMLLAQDPKLLLLDEPV-AGMTDAETEK 185
Query: 618 CA---KVRAMGTSCITISH 633
A K A S + + H
Sbjct: 186 TAELLKSLAGKHSILVVEH 204
|
Length = 249 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 0.001
Identities = 53/210 (25%), Positives = 85/210 (40%), Gaps = 66/210 (31%)
Query: 442 ANYIEFSGVKV--VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 499
A YI ++ +V V P ++++++L PG+ + + G NG+GKS+L R++ G+
Sbjct: 3 AQYI-YTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE 61
Query: 500 GH-IAKPG--VGSDLNKEIFYVPQRPY------------TAVGTLRDQL-----IYPLTS 539
G PG VG Y+PQ P V ++ L IY +
Sbjct: 62 GEARPAPGIKVG--------YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYA 113
Query: 540 DQEVEPLTHGGMVELLK---------------NVD--LEYLLD--RYPPEKEINWGDE-- 578
+ + + L ++D LE +D R PP D
Sbjct: 114 EPDAD------FDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP------WDAKV 161
Query: 579 --LSLGEQQRLGMARLFYHKPKFAILDECT 606
LS GE++R+ + RL KP +LDE T
Sbjct: 162 TKLSGGERRRVALCRLLLEKPDMLLLDEPT 191
|
Length = 556 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 0.001
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME---ERFCAKVRAMG-TSCIT 630
+G LS G++QR+ +AR +PK +LDE TS++ ++ E E+ ++ + IT
Sbjct: 1355 YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIIT 1414
Query: 631 ISHRPALVAFHDVVL 645
I+HR A + D ++
Sbjct: 1415 IAHRIASIKRSDKIV 1429
|
Length = 1466 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 34/171 (19%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSS----LFRVL---GGLW----PLVSGHIAKPG 506
NV+V+N++ + PG L + G +GSGKS+ L R++ G +W PL H
Sbjct: 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPL---HNLNRR 355
Query: 507 VGSDLNKEIFYVPQRPYTAVGTLRD--QLI-------YPLTSDQEVEPLTHGGMVELLKN 557
+ I V Q P +++ + Q+I P S + E M E+ +
Sbjct: 356 QLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLD 415
Query: 558 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
+ + RYP E S G++QR+ +AR KP ILDE TS+
Sbjct: 416 PETRH---RYPAE--------FSGGQRQRIAIARALILKPSLIILDEPTSS 455
|
Length = 529 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 27/156 (17%)
Query: 465 TLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 524
L VE G + I GP+G+GKS+L ++ G SG + G + +RP
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQ----DHTTTPPSRRP-- 72
Query: 525 AVGTL--RDQLIYPLTSDQEVEPLTHGG----------MVELLKNVDLEYLLDRYPPEKE 572
V L + L LT Q + + G + + + + +E LL R P
Sbjct: 73 -VSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP---- 127
Query: 573 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
+LS G++QR+ +AR + +LDE SA
Sbjct: 128 ----GQLSGGQRQRVALARCLVREQPILLLDEPFSA 159
|
Length = 232 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 445 IEFSGVKVV----TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500
I S TP + L+L++ G + + G NG+GKS+L + G SG
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 501 HI 502
I
Sbjct: 62 QI 63
|
Length = 263 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 47/207 (22%)
Query: 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---- 502
+SGV+V+ + + + G + G NG+GKS+L +++ G+ P SG +
Sbjct: 21 YSGVEVL--------KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGG 72
Query: 503 -----AKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-------VEPLTHGG 550
P L I+ VPQ P L++P S +E +
Sbjct: 73 NPCARLTPAKAHQLG--IYLVPQEP----------LLFPNLSVKENILFGLPKRQASMQK 120
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
M +LL + + LD + G L + ++Q + + R + ILDE T+++T
Sbjct: 121 MKQLLAALGCQLDLD-------SSAG-SLEVADRQIVEILRGLMRDSRILILDEPTASLT 172
Query: 611 TDMEERFCAKVRAM---GTSCITISHR 634
ER +++R + G + ISH+
Sbjct: 173 PAETERLFSRIRELLAQGVGIVFISHK 199
|
Length = 510 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 25/163 (15%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFY 517
++++++ L + PGS + + G NG+GKS+L ++L G VSG I L K I
Sbjct: 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIG-------LAKGI-- 375
Query: 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR-----YPPEKE 572
+ Y A + QL + L +D+ PL H + L + L D + +K
Sbjct: 376 --KLGYFA----QHQLEF-LRADE--SPLQH--LARLAPQELEQKLRDYLGGFGFQGDKV 424
Query: 573 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
S GE+ RL +A + + +P +LDE T+ + DM +
Sbjct: 425 TEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQ 467
|
Length = 638 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 19/157 (12%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
++++ L+V+ G L+I G NGSGKS++ + + L G + G+ + + ++ +
Sbjct: 26 LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRN 85
Query: 521 RPYTAVGTLRDQLIYPLTSDQ--------EVEPLTHGGMV-ELLKNVDL-EYLLDRYPPE 570
+ +Q++ + + + P V E LK V + EY R+ P
Sbjct: 86 KAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEY--RRHAPH 143
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
LS G++QR+ +A + +P+ I DE T+
Sbjct: 144 L-------LSGGQKQRVAIAGILAMRPECIIFDEPTA 173
|
Length = 280 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 34/190 (17%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG-------HIAKPGVGSDL-- 511
++ + L ++ G + + G +G GKS+L ++ GL SG I +PG +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 512 -NKEIF---YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRY 567
N + V + AV + L + + + + E + V L D+
Sbjct: 61 QNYSLLPWLTVRENIALAVDRVLPDL--SKSERRAI-------VEEHIALVGLTEAADKR 111
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE---CTSAVT-TDMEERFCAKVRA 623
P +LS G +QR+ +AR +PK +LDE A+T +++E
Sbjct: 112 P--------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEE 163
Query: 624 MGTSCITISH 633
+ + ++H
Sbjct: 164 HRVTVLMVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
L +NL L +E G L I G NG GK++L R L G SG +
Sbjct: 331 NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
|
Length = 530 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 35/176 (19%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
++ V+ +++ + L V G +++ GP+G GKS+L R++ GL + SG I
Sbjct: 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWI 63
Query: 505 PG-VGSDL---NKEIFYVPQR----PYTAVGTLRDQLIYPL--------TSDQEVEPLTH 548
G V ++L +++I V Q P+ +V R+ + Y L ++ V
Sbjct: 64 GGRVVNELEPADRDIAMVFQNYALYPHMSV---RENMAYGLKIRGMPKAEIEERVA---- 116
Query: 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
E + ++LE LLDR P ELS G++QR+ M R +P + DE
Sbjct: 117 ----EAARILELEPLLDRKP--------RELSGGQRQRVAMGRAIVREPAVFLFDE 160
|
Length = 356 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 56/194 (28%), Positives = 84/194 (43%), Gaps = 24/194 (12%)
Query: 468 VEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQR 521
++PG + I G GSGKSSL + + G I G+ L + + Q
Sbjct: 44 IKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQD 103
Query: 522 PYTAVGTLRDQLI--YPLTSDQEVEPLTHGGMVELLKNV--DLEYLLDRYPPEKEINWGD 577
P G++R L T D+ E L + LKN+ L LD E G+
Sbjct: 104 PILFSGSIRFNLDPECKCTDDRLWEALE----IAQLKNMVKSLPGGLDAVVTEG----GE 155
Query: 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM-EERFCAKVRAMG---TSCITISH 633
S+G++Q +AR F K I+DE T+++ DM E KV + +TI+H
Sbjct: 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASI--DMATENILQKVVMTAFADRTVVTIAH 213
Query: 634 RPALVAFHDVVLSL 647
R + + D+VL L
Sbjct: 214 RVSTILDADLVLVL 227
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 44/182 (24%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGV---GSDLN-- 512
+ L +E + GP+G GKS+ R L + L+ G + G SD++
Sbjct: 21 KINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80
Query: 513 ---KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN-VDLEYLLDRYP 568
K + V Q+P ++ D + Y P THG +K+ L+ ++++
Sbjct: 81 QLRKRVGMVFQQPNPFPMSIYDNVAY--------GPRTHG-----IKDKKKLDEIVEKSL 127
Query: 569 PEKEINWGDE-----------LSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDM 613
+ W DE LS G+QQRL +AR +P+ ++DE TSA+ T +
Sbjct: 128 KGAAL-W-DEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKI 185
Query: 614 EE 615
EE
Sbjct: 186 EE 187
|
Length = 250 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 53/189 (28%), Positives = 77/189 (40%), Gaps = 47/189 (24%)
Query: 453 VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVGSD 510
V+ ++ L L+V PG I GPNGSGKS+L L G + + G + G D
Sbjct: 9 VSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK--GKD 66
Query: 511 L---------NKEIFYVPQRPY------------TAVGTLRDQLIYPLTSDQEVEPLTHG 549
L + IF Q P TA+ +R + EPL
Sbjct: 67 LLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSY--------RGQEPLDRF 118
Query: 550 GMVELLKNVDLEYLLDRYPPE---KEINWGDELSLGEQQR---LGMARLFYHKPKFAILD 603
+L++ + LL P + + +N G S GE++R L MA L +P+ ILD
Sbjct: 119 DFQDLME--EKIALLK-MPEDLLTRSVNVG--FSGGEKKRNDILQMAVL---EPELCILD 170
Query: 604 ECTSAVTTD 612
E S + D
Sbjct: 171 ESDSGLDID 179
|
Length = 248 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 44/169 (26%)
Query: 457 GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI------------A 503
G+V++ +++ L + G ++ GP+G GKS+L R++ GL + SG + A
Sbjct: 14 GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA 73
Query: 504 KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT--------SDQEVEPLTHGGMVELL 555
+ GVG Y P+ +V + + + L +Q V + E+L
Sbjct: 74 ERGVGMVFQSYALY----PHLSVA---ENMSFGLKLAGAKKEEINQRVNQVA-----EVL 121
Query: 556 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+ L +LLDR P LS G++QR+ + R +P +LDE
Sbjct: 122 Q---LAHLLDRKP--------KALSGGQRQRVAIGRTLVAEPSVFLLDE 159
|
Length = 369 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.003
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 16/155 (10%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKE 514
+ ++ + G + I G NGSGKS+ R++ GL+ G + G +L ++
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 515 IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV--ELLKNVDLEYLLDRYPPEKE 572
I V Q P +Q + D + + G+ E++K VD E LL + +
Sbjct: 83 IGMVFQNP-------DNQFVGATVEDDVAFGMENQGIPREEMIKRVD-EALLAVNMLDFK 134
Query: 573 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
LS G++QR+ +A + +P+ ILDE TS
Sbjct: 135 TREPARLSGGQKQRVAVAGIIALRPEIIILDESTS 169
|
Length = 277 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 53/268 (19%), Positives = 96/268 (35%), Gaps = 41/268 (15%)
Query: 245 YASPKY----VFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQL---HSRLRTHA 297
Y SPK V WI+ + G +M E +L+ +Y+ + L +
Sbjct: 144 YLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNR 203
Query: 298 ESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEP 357
E + + + + + +L +W LL +G + L +
Sbjct: 204 ERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNW----SNIMLLGLIG--LVFWLALSL 257
Query: 358 FFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLS---ISSRRLNRLSGYADRIH 414
+A ST A ++ L + + ++S L TL ++ ++ +L A
Sbjct: 258 GWA-------STNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLE-LAPYKA 309
Query: 415 ELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNL 474
+ PQ F + +E V+ V + L ++ G +
Sbjct: 310 DF-----------PRPQ------AFPDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELV 352
Query: 475 LITGPNGSGKSSLFRVLGGLWPLVSGHI 502
+ G NGSGKS+L +L GL+ SG I
Sbjct: 353 FLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
|
Length = 546 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 22/156 (14%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI------AKPGVGSDLNKEIF 516
+++ + G I G NGSGKS++ +++ G+ + SG I L K I
Sbjct: 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86
Query: 517 YVPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVEL----LKNVDLEYLLDRYPPEK 571
V Q P VG++ + Y + E + + M LK VD +L+R E
Sbjct: 87 IVFQNPDNQFVGSI---VKYDVAFGLENHAVPYDEMHRRVSEALKQVD---MLERADYEP 140
Query: 572 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
LS G++QR+ +A + P ILDE TS
Sbjct: 141 N-----ALSGGQKQRVAIAGVLALNPSVIILDEATS 171
|
Length = 269 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 42/175 (24%)
Query: 468 VEPGSNLLITGPNGSGKSSLFRVLGG-LWPLVSGHIAKPG--------VGSDL------- 511
G L + GPNG GKS+ ++L G L P + P GS+L
Sbjct: 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82
Query: 512 -NKEIF------YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL 564
++ YV P G + + L ++ E G + EL+ ++L ++L
Sbjct: 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELL------KKKDE---RGKLDELVDQLELRHVL 133
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA 619
DR I D+LS GE QR+ +A F DE +S + D+++R A
Sbjct: 134 DR-----NI---DQLSGGELQRVAIAAALARDADFYFFDEPSSYL--DIKQRLNA 178
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.003
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 23/210 (10%)
Query: 425 IEDKSPQRNGSRNYFSEANYIEFSGVKV--VTPTGNVLVENLTLKVEPGSNLLITGPNGS 482
+ K Q + + F+ AN E + T +VL +L L ++ GP+G
Sbjct: 61 LNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVL-HDLNLDIKRNKVTAFIGPSGC 119
Query: 483 GKSSLFRVLGGLWPLVSG-----HIAKPGVGS--------DLNKEIFYVPQRPYTAVGTL 529
GKS+ R L L L+ G I G + +L I V Q+P ++
Sbjct: 120 GKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSI 179
Query: 530 RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589
D + Y ++ + +VE K++ L D + + G+ LS G+QQRL +
Sbjct: 180 FDNVAYGPRNNGINDRKILEKIVE--KSLKSAALWDEVKDDLD-KAGNALSGGQQQRLCI 236
Query: 590 ARLFYHKPKFAILDECTSAV----TTDMEE 615
AR +P+ ++DE TSA+ T +EE
Sbjct: 237 ARAIALEPEVLLMDEPTSALDPIATAKIEE 266
|
Length = 329 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 0.004
Identities = 37/153 (24%), Positives = 54/153 (35%), Gaps = 43/153 (28%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA---KPGVGSD----LNK 513
V +++ +V G + I G G+G++ L L GL P SG I KP +
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 514 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI 573
I YVP+ + G L+ + I
Sbjct: 76 GIAYVPE-----------------------DRKREG-------------LVLDLSVAENI 99
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
LS G QQ++ +AR P+ ILDE T
Sbjct: 100 ALSSLLSGGNQQKVVLARWLARDPRVLILDEPT 132
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.004
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 36/157 (22%)
Query: 476 ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV---GSD----------LNKEIFYVPQRP 522
+ GP+G GKS+ R L + L+ G V G + L K++ V Q+P
Sbjct: 36 LIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQP 95
Query: 523 YTAVGTLRDQLIYPL---------TSDQEVE-PLTHGGMVELLKNVDLEYLLDRYPPEKE 572
++ + +IY L D+ VE L + + +K+ E L
Sbjct: 96 NPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESAL-------- 147
Query: 573 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
LS G+QQR+ +AR+ KP +LDE TSA+
Sbjct: 148 -----SLSGGQQQRVCIARVLAVKPDVILLDEPTSAL 179
|
Length = 252 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 46/146 (31%), Positives = 62/146 (42%), Gaps = 37/146 (25%)
Query: 476 ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-VGSDLNKEIF---------YVPQ--R-- 521
I G +G+GK+SL + GL G I G V D K I YV Q R
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLF 88
Query: 522 P-YTAVGTLRDQLIYPL--TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE 578
P Y G LR Y + + + + + V LL +E LLDRYP
Sbjct: 89 PHYKVRGNLR----YGMAKSMVAQFDKI-----VALL---GIEPLLDRYP--------GS 128
Query: 579 LSLGEQQRLGMARLFYHKPKFAILDE 604
LS GE+QR+ + R P+ ++DE
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDE 154
|
Length = 352 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 23/184 (12%)
Query: 445 IEFSGVKVVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
IEF V P V + N+ K+ G + + G +GSGKS++ +L + + G I
Sbjct: 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLT---SDQEVEP---LTHG-G 550
G + L ++ V Q + T+ + + Y T S +++E + +
Sbjct: 402 LDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMD 461
Query: 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
+ + N LD E G LS G++QR+ +AR ILDE TSA+
Sbjct: 462 FINKMDNG-----LDTVIGEN----GVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
Query: 611 TDME 614
T+ E
Sbjct: 513 TESE 516
|
Length = 582 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 40/174 (22%), Positives = 77/174 (44%), Gaps = 21/174 (12%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
I FS P G +L +NL ++ S + + GPNG GKS++ +++ G SG + +
Sbjct: 509 ISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFR 568
Query: 505 PGVGSDLNKEIF---YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 561
+ + +F +V ++ L +P +Q++ H G + N+ L+
Sbjct: 569 ---SAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR--AHLGSFGVTGNLALQ 623
Query: 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
+ LS G++ R+ A++ + KP +LDE ++ + D E
Sbjct: 624 PMY-------------TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVE 664
|
Length = 718 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1064 | |||
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PF06472 | 281 | ABC_membrane_2: ABC transporter transmembrane regi | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.98 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.98 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.98 | |
| PF06472 | 281 | ABC_membrane_2: ABC transporter transmembrane regi | 99.97 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.97 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.97 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.97 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.97 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.97 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.96 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.96 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.96 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.96 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.96 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.96 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.95 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.95 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.95 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.95 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.95 | |
| PRK12369 | 326 | putative transporter; Reviewed | 99.95 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.95 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.92 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.92 | |
| PRK12369 | 326 | putative transporter; Reviewed | 99.92 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.92 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.92 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.92 | |
| PRK11098 | 409 | microcin B17 transporter; Reviewed | 99.92 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.91 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.91 | |
| PRK11098 | 409 | microcin B17 transporter; Reviewed | 99.9 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.9 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.9 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.89 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.89 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.88 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.88 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.87 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.87 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.86 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.86 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.84 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.84 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.84 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.82 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.81 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.75 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.74 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.74 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.73 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.73 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.73 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.69 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.69 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.65 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.65 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.64 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.63 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.61 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.61 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.59 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.57 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.55 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.51 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.49 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.43 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.42 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.42 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.41 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.39 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.37 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.35 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.34 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.31 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.29 | |
| PF05992 | 315 | SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009 | 99.28 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.27 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.22 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.16 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.13 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.12 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.12 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.09 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.04 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.03 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 98.98 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.97 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.91 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 98.89 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.88 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 98.87 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 98.82 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.81 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.8 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.74 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.73 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.7 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 98.67 | |
| COG1133 | 405 | SbmA ABC-type long-chain fatty acid transport syst | 98.64 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.64 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.63 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.61 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.58 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.58 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.54 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.54 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 98.52 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.5 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.48 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.46 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.44 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.42 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.34 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.33 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.3 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.29 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.23 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 98.21 | |
| PF05992 | 315 | SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009 | 98.2 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.15 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.13 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.13 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.11 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.07 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.07 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.04 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.01 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 97.97 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 97.96 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 97.94 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 97.91 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 97.91 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 97.88 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 97.85 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 97.85 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 97.84 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 97.84 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 97.82 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 97.81 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 97.8 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 97.78 |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-77 Score=697.80 Aligned_cols=530 Identities=22% Similarity=0.268 Sum_probs=432.5
Q ss_pred hHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCh-hHHHHHHHHHHHHHHHHHHHHH
Q 001511 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFL-RRV-PLFFQLISENILLCFLLSTMHS 162 (1064)
Q Consensus 85 ~~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~-~~~-~~~~~~l~~~~~l~~~~~~~~~ 162 (1064)
...++||+++++|+|+. +.+.++++++.+..+..+|++.|.++|.+.. .+. ..+.+......++.++.+++++
T Consensus 132 ~~~~~rl~~l~~~~~~~-----l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~ 206 (716)
T KOG0058|consen 132 HTLLKRLLGLLKPEWKW-----LVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANA 206 (716)
T ss_pred hhHHHHHHHHhchhHHH-----HHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44789999999999884 6677777777778888999999999998876 222 1222222222333333344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC-CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 163 TSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWR 241 (1064)
Q Consensus 163 ~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~-~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~ 241 (1064)
+..++..+.+.+ +..++|...|+++++++++|||. +.|++.+|+++|...+.+.+...+...+.+.+.++ .+..
T Consensus 207 ~r~~~~~~a~~r----v~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~-g~~~ 281 (716)
T KOG0058|consen 207 IRGGLLQYAGER----VVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGF-GGLG 281 (716)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHH
Confidence 666666666666 78888999999999999999987 58899999999999998888888888877776543 3456
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 001511 242 LCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALT 321 (1064)
Q Consensus 242 l~~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~ 321 (1064)
+|+++||.|+++.++.+|+++++...+++..+++.++.|+..++.++..+|...++++|++|++|+.|.+++.++.++..
T Consensus 282 ~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~ 361 (716)
T KOG0058|consen 282 FMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVL 361 (716)
T ss_pred HHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999877777666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 322 RHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKP-DTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISS 400 (1064)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~-~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~ 400 (1064)
+..++. ....++++.............++ ++||.+.. +.+|.| .+.+|+.|... +..++..+...+
T Consensus 362 ~i~~k~---a~a~~~f~~~~~~~~~~~~~siL----~~Gg~Lv~~g~mt~g--~L~sFllY~~~----~g~sl~~ls~~y 428 (716)
T KOG0058|consen 362 KLSKKE---AVAYGIFFGSTNLLGNLAVLSIL----FYGGHLVLTGSLTSG--ALSSFLLYQVQ----LGSSLSGLSSFY 428 (716)
T ss_pred HHHHHH---HHHhhHhHhHHHHHHhHHHHHHH----HhccchhhcCccchh--HHHHHHHHHHH----HHHHHHHHHHHH
Confidence 543322 22233333332222233333333 35666653 455555 66777766543 446788888999
Q ss_pred HHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC--CeeeeeceEEEeCCCEEEEEc
Q 001511 401 RRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITG 478 (1064)
Q Consensus 401 ~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~--~~~L~~vsl~i~~Ge~vaIvG 478 (1064)
..+.+..++.+|++|++|.+|..+..+...+ ....+.|+|+||+|.||.. .++|+|+||+|+|||+|||||
T Consensus 429 s~lmkgvGAs~rvFel~dr~P~i~~~G~~~p-------~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVG 501 (716)
T KOG0058|consen 429 SELMKGVGASERVFELMDRKPRIPLTGTLAP-------DHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVG 501 (716)
T ss_pred HHHHHhcchHHHHHHHhccCCCCCCCCcccc-------ccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEEC
Confidence 9999999999999999998876553211111 1235789999999999975 479999999999999999999
Q ss_pred CCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHH
Q 001511 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 552 (1064)
Q Consensus 479 ~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~ 552 (1064)
|||+||||+.++|.++|+|++|+|.+||+| ..+|++||+|.|||.+|++||+|||.|+... .++|++.
T Consensus 502 PSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~------~t~e~i~ 575 (716)
T KOG0058|consen 502 PSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDN------ATDEEIE 575 (716)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCC------CCHHHHH
Confidence 999999999999999999999999999987 3578999999999999999999999999763 6899999
Q ss_pred HHHHhcCChhHHhcCCCCcccC---CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcE
Q 001511 553 ELLKNVDLEYLLDRYPPEKEIN---WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTS 627 (1064)
Q Consensus 553 ~~l~~~~L~~~~~~~p~~~~~~---~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~T 627 (1064)
.+++.++.++|+..+|+++++. .|.+|||||||||||||||++||+||||||+|||||.++|..+++.+.+ .++|
T Consensus 576 ~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rT 655 (716)
T KOG0058|consen 576 AAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRT 655 (716)
T ss_pred HHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCe
Confidence 9999999999999999987763 6889999999999999999999999999999999999999999999975 4899
Q ss_pred EEEEccChhHHHhcCEEEEEeCC
Q 001511 628 CITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 628 vI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+|+|+||+++++.||+|++++++
T Consensus 656 VlvIAHRLSTV~~Ad~Ivvi~~G 678 (716)
T KOG0058|consen 656 VLVIAHRLSTVRHADQIVVIDKG 678 (716)
T ss_pred EEEEehhhhHhhhccEEEEEcCC
Confidence 99999999999999999999975
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-77 Score=677.49 Aligned_cols=630 Identities=38% Similarity=0.611 Sum_probs=541.5
Q ss_pred HHhhhhhhhcccchhhhhhccccCCCCccccCCCCCCCCCCcc-cccccccchhcccccccChHHHHHHHHHHhhchh-h
Q 001511 24 ILLASGILVAGGTAAYLKSRFSSKKPDAFGHYNGLGDSERKPD-KAVANRSNIKKANQKKGGLKSLQVLAAILLSEMG-K 101 (1064)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~rL~~~~~p~~~-~ 101 (1064)
+++++++..+|++++|+..+..+..+++|. ++...+.++.. -....+..++|-+.++..+..+.++++++.|... .
T Consensus 2 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~t~~~~~~~~~~~~~k~~~~~~f~~k~~~ilkil~p~~~~~ 79 (659)
T KOG0060|consen 2 LAITAKVCAPGLVLRHASFLLAKLYIGSFR--GNPRFRSETCMSLAGKKQGAKAKASLDKVFFQKFLQILKILFPSTFSS 79 (659)
T ss_pred CcccccccCchhHHHHHHHHHHHhhhhhcc--CCCcccccchhhccCCCCCccchhhhhHHHHHHHHHHHHHhccCcccc
Confidence 467889999999999999999999999995 44444444433 3333344445666777778889999999988755 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 102 MGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTK 181 (1064)
Q Consensus 102 ~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~ 181 (1064)
...+++++++++.+..++.++.+..+.+.++.++++++.+.|.+.+..+++++.+.+.++++.+|....+..+||+++++
T Consensus 80 ~~~~l~l~~~~l~~~~~~~~y~~~~~~~~~y~al~~kd~~~F~~~~~~~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk 159 (659)
T KOG0060|consen 80 QTALLLLALVALTLLTTADVYMIGNIPTKFYVALINKDAELFKRLLFKYVLLIPGISLLNALLKFTTNELYLRFRKNLTK 159 (659)
T ss_pred HHHHHHHHHHHHHHHHHhHhheecccchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Confidence 44445666777777777777788888999999999999999999998888888888888999999999999999999999
Q ss_pred HHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001511 182 LIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGA 261 (1064)
Q Consensus 182 ~l~~~~f~~~~~~~i~~~~~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~l~ 261 (1064)
.++..||++..||.++..+.+++|||||+++|++++|..+.+++.+++.++++++.|+|.++-...|....+++.|+.+.
T Consensus 160 ~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~ 239 (659)
T KOG0060|consen 160 YLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIG 239 (659)
T ss_pred HHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999989
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 262 GTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFL 341 (1064)
Q Consensus 262 ~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~ 341 (1064)
+++.+.+.+++.+++.++|+.||++|+.+.+++.|+|.|++|++++.|....+++|+++.++.+..+...++.+++++++
T Consensus 240 ~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~ 319 (659)
T KOG0060|consen 240 TVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIF 319 (659)
T ss_pred HHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 001511 342 LKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISR 421 (1064)
Q Consensus 342 ~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~ 421 (1064)
. |++.+++++++..|+|.|.. .+..+ .+++...+.+...++..++++++.+.....++.++.++.+||.|+++...
T Consensus 320 ~-Ylg~ilsy~vi~~p~Fs~h~-y~~~s--~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~ 395 (659)
T KOG0060|consen 320 D-YLGGILSYVVIAIPFFSGHV-YDDLS--PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLD 395 (659)
T ss_pred H-HHHhhheeeEEeeeeecccc-cCCcC--HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Confidence 6 88888888888889988863 23333 45666777777778889999999999999999999999999999886554
Q ss_pred hcccCC---------------CCCCCCCCCCCCCCCCcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCchh
Q 001511 422 ELSIED---------------KSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKS 485 (1064)
Q Consensus 422 ~~~~~~---------------~~~~~~~~~~~~~~~~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsGKS 485 (1064)
+..... .....++..+..+.+..|++++|++..|+ +..+++|+||+|+.|+.+.|+||||||||
T Consensus 396 d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKt 475 (659)
T KOG0060|consen 396 DLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKT 475 (659)
T ss_pred HhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchh
Confidence 432110 00011111222334578999999999988 66788999999999999999999999999
Q ss_pred HHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCC-cCCCCCHHHHHHHHHhcCChhHH
Q 001511 486 SLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLL 564 (1064)
Q Consensus 486 TLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~-~~~~~~~~~i~~~l~~~~L~~~~ 564 (1064)
+|+|+++||||..+|++....... -+.+.|+||.||...||+||++.||..... ..+..+|+++.+.|+.+++.+++
T Consensus 476 SLlRvlggLWp~~~G~l~k~~~~~--~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~ 553 (659)
T KOG0060|consen 476 SLLRVLGGLWPSTGGKLTKPTDGG--PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLL 553 (659)
T ss_pred HHHHHHhcccccCCCeEEecccCC--CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHH
Confidence 999999999999999999876421 146999999999999999999999965432 23346889999999999999998
Q ss_pred hcCCC-C--cccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhc
Q 001511 565 DRYPP-E--KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFH 641 (1064)
Q Consensus 565 ~~~p~-~--~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~ 641 (1064)
++... + .+.+|.+.||+|||||+++||.++++|++.||||+|||+|.+.|..+++.+++.|+|.|.|+||.++.++|
T Consensus 554 ~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfH 633 (659)
T KOG0060|consen 554 EREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFH 633 (659)
T ss_pred HHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhh
Confidence 88642 3 33479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCceEEeecCCC
Q 001511 642 DVVLSLDGEGEWRVHDKRDG 661 (1064)
Q Consensus 642 D~Il~l~~~g~~~~~~~~~~ 661 (1064)
|.++-|+++|+|.+++-+++
T Consensus 634 d~~L~~~g~g~w~~~~I~~q 653 (659)
T KOG0060|consen 634 DYVLRMDGRGSWRFHQIDDQ 653 (659)
T ss_pred hEEEEecCCCceEEEEechh
Confidence 99999999999999855543
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-78 Score=680.79 Aligned_cols=316 Identities=26% Similarity=0.432 Sum_probs=286.5
Q ss_pred CCCCCCCchhhhhccccccCCceeecCCCeeehhHHHHHHhhHHHHHHhhcCCceehhHhhcCHHHHHHHHHHHHHHhhh
Q 001511 731 LKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAA 810 (1064)
Q Consensus 731 ~~~~~~~~p~Ra~~lCri~iP~l~s~e~g~lv~c~~~lv~Rt~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~~~~~~~p 810 (1064)
.+..+..+..++..+.|+.+|..+|+|.|.+.+|+++|++|||||++||.|||++||+||++|.+.|.+.|++|+++|+|
T Consensus 90 e~~~N~~f~k~l~~L~Kilip~vfc~e~gll~~hs~~Li~RTfLSl~VA~LdGqlVk~Ivrk~~r~F~~~LlkW~liaiP 169 (728)
T KOG0064|consen 90 EPAKNSQFLKRLNVLSKILIPTVFCKETGLLTAQSFFLISRTFLSLFVAKLDGQLVKNIVRKRGRQFLWDLLKWFLIAIP 169 (728)
T ss_pred ccccCHHHHHHHHHHHHHhcchHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHhhhcc
Confidence 34445556678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHH
Q 001511 811 SSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDIL 890 (1064)
Q Consensus 811 as~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~~~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~ 890 (1064)
||||||+|||++++|+|+||+|||+|+|++||+|+|||+|+|+|+|++||||+||+||.+||+++|+||||++||+||++
T Consensus 170 AtFvNS~Iryle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~ 249 (728)
T KOG0064|consen 170 ASFVNSAIRYLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLI 249 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC---CchhHHHHHHHHHHHHHHHhcCCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHH
Q 001511 891 WFTWRMKALTG---QRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMI 967 (1064)
Q Consensus 891 ~~~~~l~~~~g---~~g~~~~~~~~~~~~~~lr~~~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~ 967 (1064)
+++++|-++.+ ..|..+.+..+.+++.+||+++|+||+|+++|++++|+|||+|||+|+|+||||||+||++|...+
T Consensus 250 l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql 329 (728)
T KOG0064|consen 250 LISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQV 329 (728)
T ss_pred HHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHH
Confidence 99999988765 445556888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHHHHHHHhhhcC---CccccchhH--HHHHHHhHHHHHHhhh
Q 001511 968 ESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKG---DRALVSTQG--EIRMIMNLIHCLDSHL 1042 (1064)
Q Consensus 968 ~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~ 1042 (1064)
+++|++|+.+|+.++++|+||.|+|||++||.|+..|+++|++|.+...+ +....++-+ +-.-|--+-.|+.|+.
T Consensus 330 ~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saA 409 (728)
T KOG0064|consen 330 DESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAA 409 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997432 222223322 2333444555666665
Q ss_pred hccc
Q 001511 1043 SSIT 1046 (1064)
Q Consensus 1043 ~~~~ 1046 (1064)
.+|.
T Consensus 410 dAie 413 (728)
T KOG0064|consen 410 DAIE 413 (728)
T ss_pred HHHH
Confidence 5553
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-70 Score=669.93 Aligned_cols=562 Identities=34% Similarity=0.608 Sum_probs=455.0
Q ss_pred hHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTS 164 (1064)
Q Consensus 85 ~~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ 164 (1064)
++.+++++++++||+++..++.+++.++++++.+++++.+|.+.+.++|.++.++...|...++.++++++++.+++++.
T Consensus 76 ~~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~ 155 (659)
T TIGR00954 76 LGKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAI 155 (659)
T ss_pred HHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999998777788888899999999999999999999999987765556655555555556666778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1064)
Q Consensus 165 ~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~ 244 (1064)
+|+..++..+||.+++++++++||++..+|++.++|++.+|++||+++|++.+++.+...+..++..+++.+.+.+.++.
T Consensus 156 ~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 156 KYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999888888877666666655
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001511 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1064)
Q Consensus 245 ~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1064)
.++|.+++++++++|+..++.+++++++.+.+.+.++.+++++..+.+..+|+++||+|++|+.|.+++++.++++.+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc-ccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGN-LKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1064)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~-l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l 403 (1064)
.+..+.......+..++..+....+.++++..+++... ...+..|.|. +++.+......+..++.|+..+......+
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~--~~~~f~~~~~~~~~l~~~~~~l~~~~~~i 393 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEE--LMQEFYNNGRLLLKAADALGRLMLAGRDM 393 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655554445444444322222222222212222111 1123445553 22322222334566778999999999999
Q ss_pred HHHHHHHHHHHHHHhhchhcccCC--C-CCCC-CC-------------CCCCCCCCCcEEEEeeEEEcCCCCeeeeeceE
Q 001511 404 NRLSGYADRIHELMVISRELSIED--K-SPQR-NG-------------SRNYFSEANYIEFSGVKVVTPTGNVLVENLTL 466 (1064)
Q Consensus 404 ~~~~~~~~Ri~ell~~~~~~~~~~--~-~~~~-~~-------------~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl 466 (1064)
+++.++++|+.++++.+++...+. . ..+. .. ........+.|+++||++.|++++++|+|+||
T Consensus 394 ~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~il~~isl 473 (659)
T TIGR00954 394 TRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCCCeeeecceE
Confidence 999999999999998765532110 0 0000 00 00011123569999999999766789999999
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCc-CCC
Q 001511 467 KVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEP 545 (1064)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~-~~~ 545 (1064)
+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +++++||||+|+++.+|++||+.++...... ...
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 548 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRG 548 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccC
Confidence 9999999999999999999999999999999999999876 4689999999999999999999987532111 112
Q ss_pred CCHHHHHHHHHhcCChhHHhcCCC--CcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q 001511 546 LTHGGMVELLKNVDLEYLLDRYPP--EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623 (1064)
Q Consensus 546 ~~~~~i~~~l~~~~L~~~~~~~p~--~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~ 623 (1064)
.+++++.++++.+++++++++ |. ++..+|+.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++
T Consensus 549 ~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~ 627 (659)
T TIGR00954 549 LSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE 627 (659)
T ss_pred CCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 457788999999999998887 54 344467889999999999999999999999999999999999999999999988
Q ss_pred cCcEEEEEccChhHHHhcCEEEEEeCCCceE
Q 001511 624 MGTSCITISHRPALVAFHDVVLSLDGEGEWR 654 (1064)
Q Consensus 624 ~g~TvI~ItH~l~~i~~~D~Il~l~~~g~~~ 654 (1064)
.|+|+|+||||+++++.||++++++++|+|.
T Consensus 628 ~~~tvI~isH~~~~~~~~d~il~l~~~g~~~ 658 (659)
T TIGR00954 628 FGITLFSVSHRKSLWKYHEYLLYMDGRGGYQ 658 (659)
T ss_pred cCCEEEEEeCchHHHHhCCEEEEEeCCCCcc
Confidence 8999999999999999999999999998885
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-67 Score=638.53 Aligned_cols=529 Identities=19% Similarity=0.241 Sum_probs=415.6
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1064)
Q Consensus 87 ~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~y 166 (1064)
.+.++++.+++|++. +.-.++.+++...+++..|.....++|.+........ +....+.+++..++..+.++
T Consensus 141 ~~~~f~~~~~~~~~~-----l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~t---L~vl~ig~~~~~l~~~~l~~ 212 (709)
T COG2274 141 GLSWFIPLLFKYRRL-----LFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRST---LTVLAIGLLLAALFEALLRL 212 (709)
T ss_pred chHhHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhH---HHHHHHHHHHHHHHHHHHHH
Confidence 467778888888773 4555555666667777888888888887765443221 11112222223344556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1064)
Q Consensus 167 l~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~ 245 (1064)
++.++...+.+++...+..++|+|++++|++||+++ .|+..+|+. |++++.+.+...+...+..++.+++| ..+|++
T Consensus 213 lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~-l~vm~~ 290 (709)
T COG2274 213 LRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIF-LAVMFL 290 (709)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 777777777777888899999999999999999865 678878776 77776555444333322222222222 345677
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 001511 246 ASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMR 325 (1064)
Q Consensus 246 ~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~ 325 (1064)
++|.|++++++.+|+..++...+.+.+++.+++..+..++......+...++++||+.+.|.+...+|++++.+..+...
T Consensus 291 ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~ 370 (709)
T COG2274 291 YSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGF 370 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999988888899999999998888888888888889999999999999999999999999999888665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 326 VVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLN 404 (1064)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~ 404 (1064)
+..+.....+.+..++..+. ..+++| +|..+. .+..|+|. ++++ ......+.+|+..+...+.+++
T Consensus 371 ~~~~~~~~~~~~~~~l~~l~---~v~iL~----~G~~lVl~~~lTlG~--LiAf----~~l~~~f~~pi~~L~~~~~~~q 437 (709)
T COG2274 371 KTEKLALILNTIKSLLQQLS---SVLILW----FGAILVLEGELTLGQ--LVAF----NMLAGYFISPITRLSQLWTDFQ 437 (709)
T ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHhcCCcchHH--HHHH----HHHHHHHHhHHHHHHHHHHHHH
Confidence 55444444444444433222 223333 333332 34567774 3443 2334556688889999999999
Q ss_pred HHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCc
Q 001511 405 RLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSG 483 (1064)
Q Consensus 405 ~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsG 483 (1064)
++..+.+|+.++++.++|.+.+... .......+.|+++||+|+|..+ +++|+|+||+|++||++||||+||||
T Consensus 438 ~~~~~~~rL~dil~~~~E~~~~~~~------~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsG 511 (709)
T COG2274 438 QAKVALERLGDILDTPPEQEGDKTL------IHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSG 511 (709)
T ss_pred HHHHHHHHHHHHhcCCccccccccc------ccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCC
Confidence 9999999999999988775422110 1112236789999999999765 56999999999999999999999999
Q ss_pred hhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHh
Q 001511 484 KSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557 (1064)
Q Consensus 484 KSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~ 557 (1064)
||||+|+|+|+|+|++|+|.+||.| .++|++||||+||+.+|.+||+|||+++.+. .++|++.++++.
T Consensus 512 KSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~------~~~e~i~~A~~~ 585 (709)
T COG2274 512 KSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPE------ATDEEIIEAAQL 585 (709)
T ss_pred HHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCC------CCHHHHHHHHHH
Confidence 9999999999999999999999987 4689999999999999999999999998764 578999999999
Q ss_pred cCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEc
Q 001511 558 VDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITIS 632 (1064)
Q Consensus 558 ~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~It 632 (1064)
+|+++++.++|.++++ +.|.+||||||||++|||||+++|+||||||||||||+++|+.+++.+.+. |+|+|+||
T Consensus 586 ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~Ia 665 (709)
T COG2274 586 AGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIA 665 (709)
T ss_pred hCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEE
Confidence 9999999999998776 468899999999999999999999999999999999999999999999875 69999999
Q ss_pred cChhHHHhcCEEEEEeCC
Q 001511 633 HRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 633 H~l~~i~~~D~Il~l~~~ 650 (1064)
||+++++.||+|+||+++
T Consensus 666 HRl~ti~~adrIiVl~~G 683 (709)
T COG2274 666 HRLSTIRSADRIIVLDQG 683 (709)
T ss_pred ccchHhhhccEEEEccCC
Confidence 999999999999999975
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=640.76 Aligned_cols=535 Identities=18% Similarity=0.192 Sum_probs=404.0
Q ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 86 KSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSK 165 (1064)
Q Consensus 86 ~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1064)
.+++|++++.+|+|. .+++.++.++++-+....++++.++++......+.+...+....+.+++++++++..+.+
T Consensus 650 ~s~~~i~k~~~pe~~-----~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~ 724 (1228)
T KOG0055|consen 650 VSFWRIFKLNKPEWP-----YLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITN 724 (1228)
T ss_pred ccHHHHHHhccchhH-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999877 466666677777777778899999999988755533332211113333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC--CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR--ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1064)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~--~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~ 243 (1064)
+++.++-...-++++.|+|.+.|+++++++++|||.. .+.+.+|+.+|...+...+.+-+..++..+... +.+..+.
T Consensus 725 ~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~-~~~iiia 803 (1228)
T KOG0055|consen 725 FLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAV-IIGIIIA 803 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4444443334444999999999999999999999852 367889999999988777776666665555432 3344566
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Q 001511 244 SYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH 323 (1064)
Q Consensus 244 ~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~ 323 (1064)
++++|.+++++++..|++.+......+.+.....+..+...+......+..+|+++|++|++|++..+.+.+..+. .
T Consensus 804 f~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~---p 880 (1228)
T KOG0055|consen 804 FIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEK---P 880 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHH---H
Confidence 7889999999999999888877766666666666666666677788889999999999999999886444433333 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 324 MRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1064)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~ 402 (1064)
.+...+..++.++...+.+.++....++.++ +|+.+. .+..+... ++.. + ..+......++.......+
T Consensus 881 ~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~----~G~~Li~~g~~~~~~--~~~v---f-~~l~~ta~~~~~~~s~~Pd 950 (1228)
T KOG0055|consen 881 RKSSFKRGLISGLGFGFSQSLLFFVYALSFW----YGARLISNGEMTFED--VFRV---F-MALSFTAMALGQASSYAPD 950 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHhcCCcCHHH--HHHH---H-HHHHHHHHHHHHHHhhCcH
Confidence 2333455566666555544444444444444 444443 23334332 1111 1 1122222345566667778
Q ss_pred HHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC--CeeeeeceEEEeCCCEEEEEcCC
Q 001511 403 LNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPN 480 (1064)
Q Consensus 403 l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~--~~~L~~vsl~i~~Ge~vaIvG~s 480 (1064)
+.++..++.+++++++.++.++.++. .........+.|+++||+|.||.. .++|+|+||+|++|+.+||||||
T Consensus 951 ~~ka~~Aa~~iF~i~dr~~~i~~~~~-----~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~S 1025 (1228)
T KOG0055|consen 951 ISKAKIAAGSIFEILDRKPTIDPDST-----SGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPS 1025 (1228)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCC-----CCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCC
Confidence 89999999999999998875542210 111112236789999999999964 47999999999999999999999
Q ss_pred CCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHH
Q 001511 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1064)
Q Consensus 481 GsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~ 554 (1064)
||||||++.+|.++|+|++|.|.+||.| ..+|++||.|.|+|.||++||+|||+||.. +.+.+++.++
T Consensus 1026 GsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~------~vs~~eIi~A 1099 (1228)
T KOG0055|consen 1026 GSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE------EVSEEEIIEA 1099 (1228)
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC------CCCHHHHHHH
Confidence 9999999999999999999999999986 457999999999999999999999999922 1578999999
Q ss_pred HHhcCChhHHhcCCCCcccC---CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEE
Q 001511 555 LKNVDLEYLLDRYPPEKEIN---WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCI 629 (1064)
Q Consensus 555 l~~~~L~~~~~~~p~~~~~~---~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI 629 (1064)
++.+++++|+..+|+++++. .|.+||||||||||||||+++||+||||||+|||||.++|+.++++|++ .|+|+|
T Consensus 1100 ak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~I 1179 (1228)
T KOG0055|consen 1100 AKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTI 1179 (1228)
T ss_pred HHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEE
Confidence 99999999999999987763 6899999999999999999999999999999999999999999999987 499999
Q ss_pred EEccChhHHHhcCEEEEEeCC
Q 001511 630 TISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 630 ~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+|+||++++++||.|.|++++
T Consensus 1180 vIAHRLSTIqnaD~I~Vi~~G 1200 (1228)
T KOG0055|consen 1180 VIAHRLSTIQNADVIAVLKNG 1200 (1228)
T ss_pred EEecchhhhhcCCEEEEEECC
Confidence 999999999999999999975
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-66 Score=631.16 Aligned_cols=532 Identities=15% Similarity=0.176 Sum_probs=395.2
Q ss_pred HHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLR--RVPLFFQLISENILLCFLLSTMHSTSK 165 (1064)
Q Consensus 88 l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~--~~~~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1064)
+++++++++|+++. ++..+++.++...+....|++.++++|.+... +...++. .+++++++.++..+..
T Consensus 10 ~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 80 (588)
T PRK11174 10 TRWLKQQSKPAKRW-----LNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLP----PFILLILLFVLRALLA 80 (588)
T ss_pred hHHHHHHhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHH----HHHHHHHHHHHHHHHH
Confidence 67788999998874 55566666677778888899999999876532 2111211 1222222233344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1064)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~ 244 (1064)
|+..++..+....+..++|.++|+|+.+.|.++|++. .++..+|+++|++.+.+.+...+..++..++..+ ...++++
T Consensus 81 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~ 159 (588)
T PRK11174 81 WLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPL-LILIAVF 159 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 6666666666666888999999999999999999774 6799999999999988777666655555544332 2334566
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001511 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1064)
Q Consensus 245 ~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1064)
+++|.+++++++.+|+..++...+.++.++...+.++..+++.....+..+++++||.|+.|+.+.+++++..++..+..
T Consensus 160 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~ 239 (588)
T PRK11174 160 PINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRT 239 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 78999999888888877777777888888888787888888888888888999999999999999877777666665544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhcccccCCccchhHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 001511 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEP-FFAGNLKPDTSTLGRA--KMLSNLRYH-TSVIISLFQSLGTLSISS 400 (1064)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~-~~~g~l~~~~~tlG~~--~l~a~l~~~-~~~l~~~~~~i~~l~~~~ 400 (1064)
.+..+.. .....+........+.+++++.. ++.|.+ ++|.. .+..+..++ ..+...++.|+..+....
T Consensus 240 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~ 311 (588)
T PRK11174 240 MEVLRMA---FLSSAVLEFFASISIALVAVYFGFSYLGEL-----NFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFY 311 (588)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----ccccccccchHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3332222 11222211111111111111110 111222 33321 001111111 123345668888888889
Q ss_pred HHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCC
Q 001511 401 RRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPN 480 (1064)
Q Consensus 401 ~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~s 480 (1064)
..+.++..+++|+.++++.+++... ....+ ......+.|+++||+|.|++++++|+|+||+|++||+++|||||
T Consensus 312 ~~~~~~~~~~~ri~~~l~~~~~~~~-~~~~~-----~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~S 385 (588)
T PRK11174 312 HAKAQAVGAAESLVTFLETPLAHPQ-QGEKE-----LASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPS 385 (588)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccC-CCccc-----cCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCC
Confidence 9999999999999999976543211 00000 00011246999999987766678999999999999999999999
Q ss_pred CCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHH
Q 001511 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1064)
Q Consensus 481 GsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~ 554 (1064)
|||||||+++|+|+| |++|+|.+||.+ +++|++|+||||+|++|++||+|||.++.+. .+++++.++
T Consensus 386 GsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~------~~~eei~~a 458 (588)
T PRK11174 386 GAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPD------ASDEQLQQA 458 (588)
T ss_pred CCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCC------CCHHHHHHH
Confidence 999999999999999 899999999975 4678999999999999999999999997532 578999999
Q ss_pred HHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEE
Q 001511 555 LKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCI 629 (1064)
Q Consensus 555 l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI 629 (1064)
++.++++++++++|.++++ +.|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++ .++|+|
T Consensus 459 l~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvI 538 (588)
T PRK11174 459 LENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTL 538 (588)
T ss_pred HHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999986665 36889999999999999999999999999999999999999999998876 489999
Q ss_pred EEccChhHHHhcCEEEEEeCC
Q 001511 630 TISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 630 ~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+||||+++++.+|+|++++++
T Consensus 539 iItHrl~~i~~aD~Iivl~~G 559 (588)
T PRK11174 539 MVTHQLEDLAQWDQIWVMQDG 559 (588)
T ss_pred EEecChHHHHhCCEEEEEeCC
Confidence 999999999999999999874
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-65 Score=632.87 Aligned_cols=530 Identities=20% Similarity=0.223 Sum_probs=402.6
Q ss_pred hHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHH
Q 001511 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-VPLFFQLISENILLCFLLSTMHST 163 (1064)
Q Consensus 85 ~~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~ 163 (1064)
...+++++++++|+++. ++..+++.++.+.+....|.+.+.++|.+..+. ...+...++..++ +.++..+
T Consensus 146 ~~~~~~l~~~~~~~~~~-----l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 216 (711)
T TIGR00958 146 ADLLFRLLGLSGRDWPW-----LISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCL----LSIASSV 216 (711)
T ss_pred hhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----HHHHHHH
Confidence 34578889999988763 556666777777888899999999999887543 2333332222222 2222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRL 242 (1064)
Q Consensus 164 ~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l 242 (1064)
..++...+......++..++|.++|+++.+.|+++|++. .++..+|+++|++.+.+.+...+..++..++..+. ...+
T Consensus 217 ~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~-~~~~ 295 (711)
T TIGR00958 217 SAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLG-LLGF 295 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 344444444455555888899999999999999999764 67999999999999887776666555555543332 3344
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 001511 243 CSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 322 (1064)
Q Consensus 243 ~~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~ 322 (1064)
+++++|.+++++++.+|+..++...++++..+...+.++..++++....+..+++++||.|+.|+.+.+++++..++..+
T Consensus 296 l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~ 375 (711)
T TIGR00958 296 MLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQ 375 (711)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 56789999999888888888888888899988888888888898888899999999999999999999888887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 323 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSR 401 (1064)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~ 401 (1064)
...+.............++. .....++++ +++.+ ..+..+.|. +++++. +...+..++..+...+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~---~~~~~~il~----~g~~lv~~g~it~G~--lva~~~----~~~~l~~~l~~l~~~~~ 442 (711)
T TIGR00958 376 LNKRKALAYAGYLWTTSVLG---MLIQVLVLY----YGGQLVLTGKVSSGN--LVSFLL----YQEQLGEAVRVLSYVYS 442 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHH
Confidence 54333222111111111111 111111222 22222 123445653 334332 33456678888888999
Q ss_pred HHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCC--CCeeeeeceEEEeCCCEEEEEcC
Q 001511 402 RLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGP 479 (1064)
Q Consensus 402 ~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~--~~~~L~~vsl~i~~Ge~vaIvG~ 479 (1064)
.+++..++.+|+.++++.+++.+.+... ......+.|+++||+|.|++ ++++|+|+||+|++||+++||||
T Consensus 443 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~-------~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~ 515 (711)
T TIGR00958 443 GMMQAVGASEKVFEYLDRKPNIPLTGTL-------APLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGP 515 (711)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCC-------CCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECC
Confidence 9999999999999999865543211100 00112356999999999985 35899999999999999999999
Q ss_pred CCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHH
Q 001511 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE 553 (1064)
Q Consensus 480 sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~ 553 (1064)
||||||||+++|+|+|+|++|+|.+||++ .++|++|+||||+|++|++||+|||.++.+. .+++++.+
T Consensus 516 SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~------~~~e~i~~ 589 (711)
T TIGR00958 516 SGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD------TPDEEIMA 589 (711)
T ss_pred CCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCC------CCHHHHHH
Confidence 99999999999999999999999999975 3578899999999999999999999998543 46889999
Q ss_pred HHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEE
Q 001511 554 LLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCIT 630 (1064)
Q Consensus 554 ~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ 630 (1064)
+++.++++++++++|.+.++ ++|.+||||||||++||||++++|+|+|||||||+||+++++.+.+.....++|+|+
T Consensus 590 al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIi 669 (711)
T TIGR00958 590 AAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLL 669 (711)
T ss_pred HHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEE
Confidence 99999999999999986554 367899999999999999999999999999999999999999999844446899999
Q ss_pred EccChhHHHhcCEEEEEeCC
Q 001511 631 ISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 631 ItH~l~~i~~~D~Il~l~~~ 650 (1064)
||||+++++.+|+|++|+++
T Consensus 670 ItHrl~~i~~aD~IivL~~G 689 (711)
T TIGR00958 670 IAHRLSTVERADQILVLKKG 689 (711)
T ss_pred EeccHHHHHhCCEEEEEECC
Confidence 99999999999999999874
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-65 Score=599.02 Aligned_cols=544 Identities=28% Similarity=0.469 Sum_probs=444.1
Q ss_pred HHHHHHHHHhhchhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHH
Q 001511 87 SLQVLAAILLSEMGKM----GARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHS 162 (1064)
Q Consensus 87 ~l~rL~~~~~p~~~~~----~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~ 162 (1064)
..++++.+.++||.+. .+..+++++++.++.+..+++++.|.+.|++++...+...|+..+..+.++..+...+..
T Consensus 25 ~~~qfw~i~r~yw~~~~~~~~~~l~~~i~~~~l~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v 104 (604)
T COG4178 25 LGRQFWMIARAYWASPVRKRAWLLLIGILALILLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNV 104 (604)
T ss_pred HHHHHHHHhhhhccCccchHHHHHHHHHHHHHHHHhheeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777766543 333344555566666677778999999999999999988888887776666665556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc--CCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 163 TSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVD--GRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240 (1064)
Q Consensus 163 ~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~--~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~ 240 (1064)
...|+...+..+||+|+++++.++|+++..+|...+.+ ..++||||||++|+..+++...++..+++.++++.+.|+.
T Consensus 105 ~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~ 184 (604)
T COG4178 105 AQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTG 184 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999998886 4569999999999999999999999999998888877766
Q ss_pred HHHH-------------HhhhhHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Q 001511 241 RLCS-------------YASPKYVFWI-LAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGE 306 (1064)
Q Consensus 241 ~l~~-------------~~~~~L~li~-l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e 306 (1064)
+|+. +..|++++++ ++|+++..+++.+++|++.+++.++++.|++||+.+.++++|+|.|++|+||
T Consensus 185 iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE 264 (604)
T COG4178 185 ILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGE 264 (604)
T ss_pred HHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCc
Confidence 6651 3466677665 5667777778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHH
Q 001511 307 NKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVI 386 (1064)
Q Consensus 307 ~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l 386 (1064)
+.|+.+++++|..+.+++++..........++..+.. +...+++++..+.|+.|.+ ++|..+ ...+.+
T Consensus 265 ~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~-~s~v~P~li~ap~~f~g~i-----~~G~lm------qa~~aF 332 (604)
T COG4178 265 KVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGW-LSVVLPILIAAPRYFSGQI-----TFGGLM------QAVGAF 332 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhH-HHHHHHHHhccHhhhcCcC-----hHHHHH------HHHHHH
Confidence 9999999999999999998887777667766665442 3334555555566777665 555322 123345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCC--CCcEEEEeeEEEcCCCCeeeeec
Q 001511 387 ISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSE--ANYIEFSGVKVVTPTGNVLVENL 464 (1064)
Q Consensus 387 ~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~nvs~~y~~~~~~L~~v 464 (1064)
.....+++.+...+.++....+...|+.++.+.-.....+............... ...|+++|+++..|++++.+++.
T Consensus 333 ~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~~ll~~l 412 (604)
T COG4178 333 GQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSEL 412 (604)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCCeeeccc
Confidence 6666788888888889999999999998886543311111100001000000111 46799999999999889999999
Q ss_pred eEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC
Q 001511 465 TLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE 544 (1064)
Q Consensus 465 sl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~ 544 (1064)
||++++||.+.|.||||||||||+|+|+|+||..+|+|.++.. ..+.|+||.||++.||+||.|+||....
T Consensus 413 ~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----~~~lflpQ~PY~p~GtLre~l~YP~~~~---- 483 (604)
T COG4178 413 NFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----SALLFLPQRPYLPQGTLREALCYPNAAP---- 483 (604)
T ss_pred eeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----CceEEecCCCCCCCccHHHHHhCCCCCC----
Confidence 9999999999999999999999999999999999999998842 3689999999999999999999997653
Q ss_pred CCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh-
Q 001511 545 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA- 623 (1064)
Q Consensus 545 ~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~- 623 (1064)
..+|+++.++|.++||+++.+++ +....|...||+|||||||+||.|+++|++++|||+|||||+++|..+++++++
T Consensus 484 ~~~d~~l~~vL~~vgL~~L~~rl--~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~ 561 (604)
T COG4178 484 DFSDAELVAVLHKVGLGDLAERL--DEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEE 561 (604)
T ss_pred CCChHHHHHHHHHcCcHHHHHHH--hccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhh
Confidence 26889999999999999999995 344569999999999999999999999999999999999999999999999998
Q ss_pred -cCcEEEEEccChhHHHhcCEEEEEeCCCce
Q 001511 624 -MGTSCITISHRPALVAFHDVVLSLDGEGEW 653 (1064)
Q Consensus 624 -~g~TvI~ItH~l~~i~~~D~Il~l~~~g~~ 653 (1064)
.+.|+|.|+||.....++++.+.+++++++
T Consensus 562 lp~~tvISV~Hr~tl~~~h~~~l~l~~~~~~ 592 (604)
T COG4178 562 LPDATVISVGHRPTLWNFHSRQLELLDDAGG 592 (604)
T ss_pred CCCCEEEEeccchhhHHHHhhheeecccccc
Confidence 699999999999999999999999887655
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-64 Score=624.05 Aligned_cols=535 Identities=19% Similarity=0.229 Sum_probs=402.6
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1064)
Q Consensus 87 ~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~y 166 (1064)
.++.++++++++++. ++..+++.++...++...|.+.+.++|.+...+.... +....+.++++.++..+..+
T Consensus 141 ~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~---l~~~~~~~~~~~~~~~~~~~ 212 (710)
T TIGR03796 141 LLRALWRRLRGSRGA-----LLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDW---LRPLLLGMGLTALLQGVLTW 212 (710)
T ss_pred cHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhH---HHHHHHHHHHHHHHHHHHHH
Confidence 456777788888763 4445555556667777889999999998775432221 11111122222334455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1064)
Q Consensus 167 l~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~ 245 (1064)
+..++..++..++..+++.++|+++.++|+++|+++ .++..+|+++| +.+.+.+...+...+..++..+++ ..++++
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 290 (710)
T TIGR03796 213 LQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFY-ALLMLL 290 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 777777777777889999999999999999999765 67999999988 666666555444444444333332 244567
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 001511 246 ASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMR 325 (1064)
Q Consensus 246 ~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~ 325 (1064)
++|.+++++++.+++..++..++.++..+...+.++..++......+...++++||.++.|+.+.+++.+.+.+..+...
T Consensus 291 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 370 (710)
T TIGR03796 291 YDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQ 370 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999988888877778888888888888888888888888888888999999999999999888888877776554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 326 VVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLN 404 (1064)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~ 404 (1064)
+..+...+...+..++. .....++++ +++.. ..+..|+|. +++++ .+...++.|+..+.....+++
T Consensus 371 ~~~~~~~~~~~~~~~i~---~~~~~~il~----~g~~~v~~g~lt~G~--lva~~----~l~~~~~~p~~~l~~~~~~~~ 437 (710)
T TIGR03796 371 ELGVLTQILGVLPTLLT---SLNSALILV----VGGLRVMEGQLTIGM--LVAFQ----SLMSSFLEPVNNLVGFGGTLQ 437 (710)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHcCCCCHHH--HHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 44332222222222221 111122222 22222 123456664 34433 234556678888888999999
Q ss_pred HHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCc
Q 001511 405 RLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSG 483 (1064)
Q Consensus 405 ~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsG 483 (1064)
++..+.+|+.++++.+++....................+.|+++||+|+|++ ++++|+|+||+|++||+++||||||||
T Consensus 438 ~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsG 517 (710)
T TIGR03796 438 ELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSG 517 (710)
T ss_pred HHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCC
Confidence 9999999999999876543211100000000000112457999999999985 468999999999999999999999999
Q ss_pred hhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHh
Q 001511 484 KSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557 (1064)
Q Consensus 484 KSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~ 557 (1064)
||||+|+|+|+|+|++|+|.+||.+ .++|++|+||||+|++|++||+|||.++.+. .+++++.++++.
T Consensus 518 KSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~------~~~~~i~~al~~ 591 (710)
T TIGR03796 518 KSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPT------IPDADLVRACKD 591 (710)
T ss_pred HHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCC------CCHHHHHHHHHH
Confidence 9999999999999999999999976 3578999999999999999999999986432 578899999999
Q ss_pred cCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccC
Q 001511 558 VDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHR 634 (1064)
Q Consensus 558 ~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~ 634 (1064)
++++++++++|.+.++ ++|.+||||||||++|||||+++|+++|||||||+||+++|+++.+.+++.++|+|+||||
T Consensus 592 ~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHr 671 (710)
T TIGR03796 592 AAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHR 671 (710)
T ss_pred hCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecC
Confidence 9999999999986654 4688999999999999999999999999999999999999999999998889999999999
Q ss_pred hhHHHhcCEEEEEeCC
Q 001511 635 PALVAFHDVVLSLDGE 650 (1064)
Q Consensus 635 l~~i~~~D~Il~l~~~ 650 (1064)
+++++.+|+|++|+++
T Consensus 672 l~~i~~~D~Iivl~~G 687 (710)
T TIGR03796 672 LSTIRDCDEIIVLERG 687 (710)
T ss_pred HHHHHhCCEEEEEeCC
Confidence 9999999999999874
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-64 Score=623.65 Aligned_cols=531 Identities=17% Similarity=0.184 Sum_probs=402.0
Q ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 86 KSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSK 165 (1064)
Q Consensus 86 ~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1064)
..+++++++++++++. ++..++++++..++++..|.+.+.++|.+........ +....++++++.++..+..
T Consensus 142 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~---l~~~~~~~~~~~~~~~~~~ 213 (708)
T TIGR01193 142 NSLLKFIPLITRQKKL-----IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGT---LGIISIGLIIAYIIQQILS 213 (708)
T ss_pred chHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH---HHHHHHHHHHHHHHHHHHH
Confidence 3466778888887763 4455556666677778889999999988764432111 1111111222223344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1064)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~ 244 (1064)
++..++..++..++..+++.++|+++.++|+++|+++ .++..+|++ |++.+.+.+...+...+..++..+++ ..+++
T Consensus 214 ~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~ 291 (708)
T TIGR01193 214 YIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIV-GLFLV 291 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 6666777777777889999999999999999999765 679999998 88887766555444433333322222 23456
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001511 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1064)
Q Consensus 245 ~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1064)
+++|.+++++++.+|+..++...+.++.++...+.++..++......+..+++++||+++.|+.+.+++++.+.+..+..
T Consensus 292 ~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 371 (708)
T TIGR01193 292 RQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKS 371 (708)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 68999999998888888888888889998888888888888888888888899999999999999988888887777654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1064)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l 403 (1064)
.+..+.......+..++. .....++++ +++.+ ..+..|+|. ++++.. +...++.|+..+.....++
T Consensus 372 ~~~~~~~~~~~~~~~~~~---~~~~i~il~----~g~~lv~~g~ls~G~--lva~~~----l~~~~~~pl~~l~~~~~~~ 438 (708)
T TIGR01193 372 FKYQKADQGQQAIKAVTK---LILNVVILW----TGAYLVMRGKLTLGQ--LITFNA----LLSYFLTPLENIINLQPKL 438 (708)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 443322222222222211 111112222 22222 134456664 444332 3345667888888999999
Q ss_pred HHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCc
Q 001511 404 NRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSG 483 (1064)
Q Consensus 404 ~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsG 483 (1064)
+++..+.+|+.++++.+++...+... . ......+.|+++||+|.|++++++|+|+||+|++||+++|+||||||
T Consensus 439 ~~~~~~~~ri~~~l~~~~e~~~~~~~-~-----~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsG 512 (708)
T TIGR01193 439 QAARVANNRLNEVYLVDSEFINKKKR-T-----ELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSG 512 (708)
T ss_pred HHHHHHHHHHHHHHcCCCcccccccc-c-----CCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCC
Confidence 99999999999999866543211100 0 01112457999999999986678999999999999999999999999
Q ss_pred hhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHh
Q 001511 484 KSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557 (1064)
Q Consensus 484 KSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~ 557 (1064)
||||+++|+|+|+|++|+|.+||.+ .++|++|+||||+|++|++||+|||.++... ..+++++.++++.
T Consensus 513 KSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~-----~~~~~~i~~a~~~ 587 (708)
T TIGR01193 513 KSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE-----NVSQDEIWAACEI 587 (708)
T ss_pred HHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCC-----CCCHHHHHHHHHH
Confidence 9999999999999999999999975 4678999999999999999999999987321 2578899999999
Q ss_pred cCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh-cCcEEEEEcc
Q 001511 558 VDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA-MGTSCITISH 633 (1064)
Q Consensus 558 ~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~-~g~TvI~ItH 633 (1064)
++++++++++|.++++ ++|.+||||||||++||||++++|+++|||||||+||+++++.+++.+++ .|+|+|+|||
T Consensus 588 a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitH 667 (708)
T TIGR01193 588 AEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAH 667 (708)
T ss_pred hCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEec
Confidence 9999999999986654 46889999999999999999999999999999999999999999998876 4899999999
Q ss_pred ChhHHHhcCEEEEEeCC
Q 001511 634 RPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 634 ~l~~i~~~D~Il~l~~~ 650 (1064)
|+++++.+|+|++|+++
T Consensus 668 r~~~~~~~D~i~~l~~G 684 (708)
T TIGR01193 668 RLSVAKQSDKIIVLDHG 684 (708)
T ss_pred chHHHHcCCEEEEEECC
Confidence 99999999999999874
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-64 Score=603.01 Aligned_cols=515 Identities=19% Similarity=0.196 Sum_probs=376.4
Q ss_pred HHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 89 QVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYIT 168 (1064)
Q Consensus 89 ~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~ 168 (1064)
++++++++++++. ++..+++.++.+.+.+..|.+.++++|.....+. .+. . ...++.+++..++..+..|+.
T Consensus 2 ~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~ 73 (529)
T TIGR02868 2 LRILPLLQPRTRR-----LVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLY-L-SVAAVAVRAFGIGRAVFRYLE 73 (529)
T ss_pred hhHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHH-H-HHHHHHHHHHHHHHHHHHHHH
Confidence 4567788887763 4455556666677778889999999987764332 111 1 111111111223344556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001511 169 GTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYAS 247 (1064)
Q Consensus 169 ~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~ 247 (1064)
.++..+...++..++|.++|+++++.|.++|++. .++..+|+++|++.+...+...+..++..++..++ ...++++++
T Consensus 74 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 152 (529)
T TIGR02868 74 RLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSA-AVAAIALLS 152 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 7777677777888999999999999999999764 67999999999999887777666555555443322 234556789
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 001511 248 PKYVFWILAYVLGAGTMMRNFSPAF-GKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV 326 (1064)
Q Consensus 248 ~~L~li~l~~~~l~~~i~~~~~~~~-~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~ 326 (1064)
|.+++++++.+|+..++..++.++. ++..++.++..+++.....+..+++++||.|+.|+.+.+++++..++..+...+
T Consensus 153 ~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (529)
T TIGR02868 153 VPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERR 232 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999988877776666665555554 444555666777788888888889999999999999987777766655544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 327 VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNR 405 (1064)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~ 405 (1064)
.. +..+....+..........++++ +++.. ..+..+.|. +.+++.+ ...++.++..+......+++
T Consensus 233 ~~---~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~g~~t~g~--l~~~~~~----~~~~~~~~~~l~~~~~~~~~ 299 (529)
T TIGR02868 233 AA---RATGLGAAAQLLAAGLAVLGALW----AGGPAVADGTLAPAT--LAVLVLL----PLAAFEAFAPLPAAAQALTR 299 (529)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCCChhH--HHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 22 22232222222111222222222 22222 223445553 3343322 33455677777778889999
Q ss_pred HHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchh
Q 001511 406 LSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKS 485 (1064)
Q Consensus 406 ~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKS 485 (1064)
...+.+|+.++++.+++....... .+ .......+.|+++||+|.|++++++|+|+||++++||+++||||||||||
T Consensus 300 ~~~~~~ri~~~l~~~~~~~~~~~~--~~--~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKS 375 (529)
T TIGR02868 300 VRAAAERIEEVTGAKGPRPEGVVP--AA--GALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKS 375 (529)
T ss_pred HHHHHHHHHHHhcCCCCcCCCCCC--CC--cccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHH
Confidence 999999999999766542211100 00 00111234699999999998767899999999999999999999999999
Q ss_pred HHHHHhcccCCCCccEEEeCCCC-----ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCC
Q 001511 486 SLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL 560 (1064)
Q Consensus 486 TLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L 560 (1064)
||+++|+|+++|++|+|.+||.+ .++|++|+||||+|++|++||+|||.++.+. .+++++.++++.+++
T Consensus 376 TLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~------~~~e~i~~al~~a~l 449 (529)
T TIGR02868 376 TLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPD------ATDEELWAALERVGL 449 (529)
T ss_pred HHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCC------CCHHHHHHHHHHcCC
Confidence 99999999999999999999976 3578899999999999999999999997532 578899999999999
Q ss_pred hhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccCh
Q 001511 561 EYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRP 635 (1064)
Q Consensus 561 ~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l 635 (1064)
+++++++|+++++ ++|.+||||||||++|||||+++|+++|||||||+||+++|+.+++.+++. ++|+|+||||+
T Consensus 450 ~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 450 ADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999986665 468899999999999999999999999999999999999999999998764 89999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=606.60 Aligned_cols=529 Identities=19% Similarity=0.232 Sum_probs=393.0
Q ss_pred HHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh---HHHHHHHHHHHHHHHHHHHHHHH
Q 001511 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVP---LFFQLISENILLCFLLSTMHSTS 164 (1064)
Q Consensus 88 l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~---~~~~~l~~~~~l~~~~~~~~~~~ 164 (1064)
+++++++++|+++. ++..+++.++...+....|.+.++++|.....+.. .+.. ++ ..++++++.++..+.
T Consensus 4 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~ 76 (574)
T PRK11160 4 LLPFLKLYKRHWFM-----LSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNY-ML-PAAGVRGAAIGRTAG 76 (574)
T ss_pred hHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHH-Hh-HHHHHHHHHHHHHHH
Confidence 56777888888763 55556666666778888999999999976532211 1111 11 111121222334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC-CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1064)
Q Consensus 165 ~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~-~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~ 243 (1064)
.|+..++..+....+..++|.++|+|+...|.+++++ ..++..+|+++|++.+...+...+..++..++..+ .+..++
T Consensus 77 ~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~-~~~~~l 155 (574)
T PRK11160 77 RYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVIL-VLTIGL 155 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5666666666666688899999999999999999976 46799999999999998887776666665554432 233456
Q ss_pred HHhhhhHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 001511 244 SYASPKYVFWILAYVLGAGTMM-RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 322 (1064)
Q Consensus 244 ~~~~~~L~li~l~~~~l~~~i~-~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~ 322 (1064)
++++|.+++++++.+|+..+++ ..+.+..++..++.++..+++.....+...++++||+|+.|+.+.+++++..++..+
T Consensus 156 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~ 235 (574)
T PRK11160 156 SFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLA 235 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 7789999998877776655443 445666677777778888888888888888999999999999998877777766665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 323 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1064)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~ 402 (1064)
...+..+ ..+....+........++++++ +++....+..+.|. +++++.+.. ...++++..+......
T Consensus 236 ~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~----~g~~~~~g~~t~g~--l~a~~~~~~---~~~~~~~~~l~~~~~~ 303 (574)
T PRK11160 236 AQRRQAN---LTGLSQALMILANGLTVVLMLW----LAAGGVGGNAQPGA--LIALFVFAA---LAAFEALMPVAGAFQH 303 (574)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHhccccchhH--HHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4443332 2222222222222222222222 22222234445553 334332221 2223455666677788
Q ss_pred HHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCC
Q 001511 403 LNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNG 481 (1064)
Q Consensus 403 l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sG 481 (1064)
+++...+++|+.++++.+++...+.... .....+.|+++||+|.|+++ +++|+|+||++++||+++|+||||
T Consensus 304 ~~~~~~s~~ri~~ll~~~~~~~~~~~~~-------~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sG 376 (574)
T PRK11160 304 LGQVIASARRINEITEQKPEVTFPTTST-------AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTG 376 (574)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcccC-------CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCC
Confidence 8999999999999998765432111000 01123579999999999764 579999999999999999999999
Q ss_pred CchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHH
Q 001511 482 SGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELL 555 (1064)
Q Consensus 482 sGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l 555 (1064)
||||||+++|+|+++|++|+|.+||.+ .++|++|+||||+|++|++|++|||.++.+. .+++++.+++
T Consensus 377 sGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~------~~~~~i~~al 450 (574)
T PRK11160 377 CGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPN------ASDEALIEVL 450 (574)
T ss_pred CCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCc------cCHHHHHHHH
Confidence 999999999999999999999999975 3578899999999999999999999987542 5788999999
Q ss_pred HhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEE
Q 001511 556 KNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCIT 630 (1064)
Q Consensus 556 ~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ 630 (1064)
+.+++++++++ |+++++ ++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++ .++|+|+
T Consensus 451 ~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tvii 529 (574)
T PRK11160 451 QQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLM 529 (574)
T ss_pred HHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999 987665 36889999999999999999999999999999999999999999998876 3899999
Q ss_pred EccChhHHHhcCEEEEEeCC
Q 001511 631 ISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 631 ItH~l~~i~~~D~Il~l~~~ 650 (1064)
||||+++++.+|+|++|+++
T Consensus 530 itHr~~~~~~~d~i~~l~~G 549 (574)
T PRK11160 530 ITHRLTGLEQFDRICVMDNG 549 (574)
T ss_pred EecChhHHHhCCEEEEEeCC
Confidence 99999999999999999874
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-64 Score=617.73 Aligned_cols=531 Identities=19% Similarity=0.192 Sum_probs=394.6
Q ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHH----HHHHHHHHHHHHHHHHHH
Q 001511 86 KSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLF----FQLISENILLCFLLSTMH 161 (1064)
Q Consensus 86 ~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~----~~~l~~~~~l~~~~~~~~ 161 (1064)
..+..|+++...+-. .+++...+.+++.-.....+..+.+.+++.+........ .+..+.++.+.+++.+..
T Consensus 13 ~~~~~lf~~a~~~D~----~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~ 88 (1228)
T KOG0055|consen 13 VSFFKLFRFADRFDY----LLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISG 88 (1228)
T ss_pred cchHHheeccchhhH----HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555443322 234444445555444445677778888887765442111 111122222222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 162 STSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240 (1064)
Q Consensus 162 ~~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~ 240 (1064)
++...+....++| ...++|.+|++.+++++++|||.. .++..+|+++|++.+.+.+.+-+..++..+.+ ++.++
T Consensus 89 ~~q~~c~~~~geR----q~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~-fi~g~ 163 (1228)
T KOG0055|consen 89 FIQVSCWMRTGER----QTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLAT-FIAGF 163 (1228)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3444445555555 888999999999999999999975 57999999999999998888777766655543 33345
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 001511 241 RLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKAL 320 (1064)
Q Consensus 241 ~l~~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l 320 (1064)
++.++..|.++++++.+.|++.+....+.+.+.+...+++...++.....++..++++++.+|++|+.|.+ +|.+.
T Consensus 164 ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~----ry~~~ 239 (1228)
T KOG0055|consen 164 VIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIE----RYSKA 239 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHH----HHHHH
Confidence 66778899999999999999999888889999999999999999888999999999999999999999974 44444
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 321 TRHMRV-VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSI 398 (1064)
Q Consensus 321 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~ 398 (1064)
.+..++ ..+...+.++..++...++....+..+| +|+.+. .+..+.|.. +.. +..++ ..-.+++....
T Consensus 240 L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~W----yG~~li~~~~~~~g~v--~~v---~~~vl-~g~~sLgqa~p 309 (1228)
T KOG0055|consen 240 LENALKFGIKKGLFKGLGLGFTFFLLFASYALAFW----YGSTLILNGGYNGGDV--ITV---FFSVL-IGGMSLGQASP 309 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHhcCCCCCceE--EEE---Eeehh-hhhhhhhcccc
Confidence 443332 2445555555544443333333444444 442322 112222210 000 00111 11124555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCC--eeeeeceEEEeCCCEEEE
Q 001511 399 SSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGN--VLVENLTLKVEPGSNLLI 476 (1064)
Q Consensus 399 ~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~--~~L~~vsl~i~~Ge~vaI 476 (1064)
....+..+.+++.+|+++++..+...... . .........+.|+|+||+|+||..+ ++|+|+||+|++|++++|
T Consensus 310 ~l~~f~~a~~aa~~I~~~i~~~~~i~~~~-~----~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~val 384 (1228)
T KOG0055|consen 310 HLSAFAKARAAAYRIFETIDRKPSIDPYS-K----GGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVAL 384 (1228)
T ss_pred chHHHhccccchHHHHHHhcCCCCCCccc-c----cCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEE
Confidence 66677888999999999998766544211 0 1111222467899999999999754 799999999999999999
Q ss_pred EcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHH
Q 001511 477 TGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGG 550 (1064)
Q Consensus 477 vG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~ 550 (1064)
||||||||||++++|.|+|+|++|+|.+||.| +.+|.+||.|+|+|.+|.+||+|||.|+.++ +++++
T Consensus 385 VG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~d------at~~~ 458 (1228)
T KOG0055|consen 385 VGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPD------ATREE 458 (1228)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCc------ccHHH
Confidence 99999999999999999999999999999986 4679999999999999999999999999764 68899
Q ss_pred HHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cC
Q 001511 551 MVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MG 625 (1064)
Q Consensus 551 i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g 625 (1064)
+.++++.++.++|+..+|.++++ +.|.+|||||||||||||||+++|+||||||||||||+++|+.++++|++ .|
T Consensus 459 i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~g 538 (1228)
T KOG0055|consen 459 IEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKG 538 (1228)
T ss_pred HHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcC
Confidence 99999999999999999987665 46889999999999999999999999999999999999999999999986 49
Q ss_pred cEEEEEccChhHHHhcCEEEEEeCC
Q 001511 626 TSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 626 ~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+|.|+||||+++++++|+|++|+++
T Consensus 539 rTTivVaHRLStIrnaD~I~v~~~G 563 (1228)
T KOG0055|consen 539 RTTIVVAHRLSTIRNADKIAVMEEG 563 (1228)
T ss_pred CeEEEEeeehhhhhccCEEEEEECC
Confidence 9999999999999999999999975
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-63 Score=615.93 Aligned_cols=524 Identities=20% Similarity=0.199 Sum_probs=396.7
Q ss_pred HHHHHHH-HhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 88 LQVLAAI-LLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-VPLFFQLISENILLCFLLSTMHSTSK 165 (1064)
Q Consensus 88 l~rL~~~-~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1064)
+++++++ ++++++. ++..+++.++...+++..|...+.++|.+.... ...++. ..+.++++.++..+..
T Consensus 123 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~----~~~~~~~~~~~~~~~~ 193 (686)
T TIGR03797 123 LRDLLRFALRGARRD-----LLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQ----IALALLAAAVGAAAFQ 193 (686)
T ss_pred HHHHHHHHHhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHH----HHHHHHHHHHHHHHHH
Confidence 4555555 5666553 455556666667788888999999998876433 221111 1222222233344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1064)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~ 244 (1064)
++..++..++...+..+++..+|+++.+.|+++|+++ .++..+|++ |++.+.+.+...+...+..++..++ ...+++
T Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~ 271 (686)
T TIGR03797 194 LAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALL-NLGLMF 271 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 6666666666677888999999999999999999875 679999997 7887766655544333333322222 234556
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001511 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1064)
Q Consensus 245 ~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1064)
+++|.+++++++.+++..++..++.++..+...+.++..++......+..+++++||.++.|+.+..+|++.+++..+..
T Consensus 272 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 351 (686)
T TIGR03797 272 YYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLE 351 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 78999999888877777777777888888888888888888888888899999999999999999988888888877655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1064)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l 403 (1064)
.+..+...+...+..++. .....++++ +++.+ ..+..|+|. ++++.. +...++.|+..+...+.++
T Consensus 352 ~~~~~~~~~~~~~~~~i~---~~~~~~il~----~g~~lv~~g~ltiG~--lva~~~----l~~~~~~pl~~l~~~~~~~ 418 (686)
T TIGR03797 352 LSAQRIENLLTVFNAVLP---VLTSAALFA----AAISLLGGAGLSLGS--FLAFNT----AFGSFSGAVTQLSNTLISI 418 (686)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 544333333332222221 111222222 22222 134456664 344332 3345567888888999999
Q ss_pred HHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCC
Q 001511 404 NRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGS 482 (1064)
Q Consensus 404 ~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGs 482 (1064)
+++..+.+|+.++++.+++...+. . ......+.|+++||+|+|++ ++++|+|+||+|++||+++|+|||||
T Consensus 419 ~~~~~~~~ri~~~l~~~~e~~~~~-~-------~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGs 490 (686)
T TIGR03797 419 LAVIPLWERAKPILEALPEVDEAK-T-------DPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGS 490 (686)
T ss_pred HHHHHHHHHHHHHhcCCcccccCc-C-------CCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCC
Confidence 999999999999987655432110 0 00112357999999999964 46899999999999999999999999
Q ss_pred chhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHH
Q 001511 483 GKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 556 (1064)
Q Consensus 483 GKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~ 556 (1064)
|||||+|+|+|+|+|++|+|.+||++ .++|++|+||||||++|++||+|||.++.+ .+++++.++++
T Consensus 491 GKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-------~~~e~i~~al~ 563 (686)
T TIGR03797 491 GKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-------LTLDEAWEAAR 563 (686)
T ss_pred CHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-------CCHHHHHHHHH
Confidence 99999999999999999999999975 367899999999999999999999998743 36889999999
Q ss_pred hcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEcc
Q 001511 557 NVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISH 633 (1064)
Q Consensus 557 ~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH 633 (1064)
.++++++++++|.+.++ ++|.+||||||||++|||||+++|+++|||||||+||+++|+++.+.+++.++|+|+|||
T Consensus 564 ~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItH 643 (686)
T TIGR03797 564 MAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAH 643 (686)
T ss_pred HcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEec
Confidence 99999999999987655 468899999999999999999999999999999999999999999999888899999999
Q ss_pred ChhHHHhcCEEEEEeCC
Q 001511 634 RPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 634 ~l~~i~~~D~Il~l~~~ 650 (1064)
|+++++.+|+|++|+++
T Consensus 644 r~~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 644 RLSTIRNADRIYVLDAG 660 (686)
T ss_pred ChHHHHcCCEEEEEECC
Confidence 99999999999999874
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-63 Score=615.68 Aligned_cols=529 Identities=18% Similarity=0.207 Sum_probs=399.9
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1064)
Q Consensus 87 ~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~y 166 (1064)
.+++++++++++++. +...++++++.+.++...|.+.+.++|.+........ ++..+++++++.++..+..+
T Consensus 134 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~ 205 (694)
T TIGR03375 134 PKHWFWSTLKESWPL-----YRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFET---LWVLAIGVALAIVFDFVLKT 205 (694)
T ss_pred cchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhH---HHHHHHHHHHHHHHHHHHHH
Confidence 456677788887763 4445555566667777889999999988764332211 11111222222333455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001511 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYA 246 (1064)
Q Consensus 167 l~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~ 246 (1064)
+..++..+...++..+++..+|+|+.++|+++.....++..+|+ +|++.+.+.+...+...+..++..+++ ..+++++
T Consensus 206 ~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 283 (694)
T TIGR03375 206 LRSYFLDVAGKKADLILSAKLFERVLGLRMEARPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLF-LLVIAII 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHH
Confidence 77777777777788999999999999999998544567899998 799988776655443333333323232 2345678
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 001511 247 SPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV 326 (1064)
Q Consensus 247 ~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~ 326 (1064)
+|.+++++++.+|+..++...+.++..+...+..+..++......+..+++++||.|+.|+.+.+++++.+++..+...+
T Consensus 284 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR03375 284 GGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLK 363 (694)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888999888888888888888888888899999999999999998888888777665544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 327 VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNR 405 (1064)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~ 405 (1064)
..+.......+..++ ......++++ +++.. ..+..|+| .+++++. ++..++.|+..+.....+++.
T Consensus 364 ~~~~~~~~~~~~~~~---~~~~~~~il~----~g~~~v~~g~ls~G--~l~a~~~----~~~~~~~p~~~l~~~~~~~~~ 430 (694)
T TIGR03375 364 SRFLSNLATNFAQFI---QQLVSVAIVV----VGVYLISDGELTMG--GLIACVM----LSGRALAPLGQLAGLLTRYQQ 430 (694)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHH----HHHHHHHcCCCCHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 332222222222221 1111122222 22222 12345665 3444332 344556788888888999999
Q ss_pred HHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCch
Q 001511 406 LSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGK 484 (1064)
Q Consensus 406 ~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsGK 484 (1064)
...+.+|+.++++.+++....... .......+.|+++||+|+|++ ++++|+|+||+|++||+++|+|||||||
T Consensus 431 ~~~~~~ri~~il~~~~e~~~~~~~------~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGK 504 (694)
T TIGR03375 431 AKTALQSLDELMQLPVERPEGTRF------LHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGK 504 (694)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCC------CCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCH
Confidence 999999999999876543211100 000112357999999999975 4679999999999999999999999999
Q ss_pred hHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhc
Q 001511 485 SSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558 (1064)
Q Consensus 485 STLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~ 558 (1064)
|||+|+|+|+|+|++|+|.+||.+ .++|++|+||||+|++|++||+|||.++.+. .+++++.++++.+
T Consensus 505 STLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~------~~~~~i~~a~~~~ 578 (694)
T TIGR03375 505 STLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPY------ADDEEILRAAELA 578 (694)
T ss_pred HHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCC------CCHHHHHHHHHHc
Confidence 999999999999999999999975 4678999999999999999999999987542 5788999999999
Q ss_pred CChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEcc
Q 001511 559 DLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISH 633 (1064)
Q Consensus 559 ~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH 633 (1064)
+++++++++|.+.++ ++|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++. ++|+|+|||
T Consensus 579 ~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItH 658 (694)
T TIGR03375 579 GVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTH 658 (694)
T ss_pred ChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 999999999986655 468899999999999999999999999999999999999999999988764 899999999
Q ss_pred ChhHHHhcCEEEEEeCC
Q 001511 634 RPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 634 ~l~~i~~~D~Il~l~~~ 650 (1064)
|+++++.||+|++|+++
T Consensus 659 rl~~~~~~D~iivl~~G 675 (694)
T TIGR03375 659 RTSLLDLVDRIIVMDNG 675 (694)
T ss_pred CHHHHHhCCEEEEEeCC
Confidence 99999999999999874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=600.10 Aligned_cols=532 Identities=17% Similarity=0.209 Sum_probs=397.1
Q ss_pred ChHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHH
Q 001511 84 GLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHST 163 (1064)
Q Consensus 84 ~~~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 163 (1064)
.|+.+++++++++++++. ++..+++.++...+....+.+.+.+++.+.......+...+ .++++++.++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~---~~~~~~~~l~~~~ 80 (582)
T PRK11176 9 TWQTFRRLWPTIAPFKAG-----LIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWM---PLVVIGLMILRGI 80 (582)
T ss_pred hHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHH---HHHHHHHHHHHHH
Confidence 355567788888887663 44444555555566667788888888877643322221111 1111112233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRL 242 (1064)
Q Consensus 164 ~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l 242 (1064)
..++..++..+....+..+++..+|+++...|.+++++. .++..+|+++|++.+.+.+...+..++..++..+++ ..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~ 159 (582)
T PRK11176 81 TSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGL-FIM 159 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 455555555555566788899999999999999998764 679999999999998877666665555555443332 344
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 001511 243 CSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTR 322 (1064)
Q Consensus 243 ~~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~ 322 (1064)
+++++|.+++++++.+|+..++..++.++..+...+.++..+++.....+..+++++||.|+.|+.+.+++++..++..+
T Consensus 160 l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~ 239 (582)
T PRK11176 160 MFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQ 239 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 56679999998888777777777778888888888888888888888888888999999999999999888887777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 323 HMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSR 401 (1064)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~ 401 (1064)
...+..+...+...+..++. .....++++ +++.. ..+..++|.. ++++ .++..++.|+..+.....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~----~g~~~~~~g~is~g~~--~~~~----~~~~~~~~pl~~l~~~~~ 306 (582)
T PRK11176 240 QGMKMVSASSISDPIIQLIA---SLALAFVLY----AASFPSVMDTLTAGTI--TVVF----SSMIALMRPLKSLTNVNA 306 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHcCCCCHHHH--HHHH----HHHHHHHHHHHHHHHHHH
Confidence 55444333322222222221 111111222 12221 2234566643 2222 223446678888888999
Q ss_pred HHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCC
Q 001511 402 RLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPN 480 (1064)
Q Consensus 402 ~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~s 480 (1064)
.+++...+.+|+.++++.+++..... . ......+.|+++||+|.|+++ +++|+|+||+|++||.++|+|||
T Consensus 307 ~~~~~~~~~~ri~~~~~~~~~~~~~~--~------~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~s 378 (582)
T PRK11176 307 QFQRGMAACQTLFAILDLEQEKDEGK--R------VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRS 378 (582)
T ss_pred HHHHHHHHHHHHHHHhcCCCcCCCCC--c------CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCC
Confidence 99999999999999987554321110 0 001123469999999999764 68999999999999999999999
Q ss_pred CCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHH
Q 001511 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1064)
Q Consensus 481 GsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~ 554 (1064)
|||||||+++|+|+++|++|+|.+||.+ .++|+.|+||||+|++|++|++|||.++.+. ..+++++.++
T Consensus 379 GsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~-----~~~~~~i~~a 453 (582)
T PRK11176 379 GSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTE-----QYSREQIEEA 453 (582)
T ss_pred CCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCC-----CCCHHHHHHH
Confidence 9999999999999999999999999975 3568899999999999999999999987532 2478899999
Q ss_pred HHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEE
Q 001511 555 LKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCI 629 (1064)
Q Consensus 555 l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI 629 (1064)
++.+|++++++++|.+.++ ++|.+||||||||++|||||+++|+++|||||||+||++++..+.+.+.+ .++|+|
T Consensus 454 l~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI 533 (582)
T PRK11176 454 ARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSL 533 (582)
T ss_pred HHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999986655 46889999999999999999999999999999999999999999998876 479999
Q ss_pred EEccChhHHHhcCEEEEEeCC
Q 001511 630 TISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 630 ~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+||||++.++.||+|++++++
T Consensus 534 ~VtHr~~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 534 VIAHRLSTIEKADEILVVEDG 554 (582)
T ss_pred EEecchHHHHhCCEEEEEECC
Confidence 999999999999999999874
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=598.25 Aligned_cols=524 Identities=23% Similarity=0.296 Sum_probs=391.6
Q ss_pred HHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 88 LQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYI 167 (1064)
Q Consensus 88 l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl 167 (1064)
+++++.+.+ ++ . ++..+++.++.+.++...+.+.+.+++.+. .............+++.++..++.....++
T Consensus 4 ~~~l~~~~~-~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 75 (567)
T COG1132 4 LRRLLKYLK-YK-L-----LLLAILLLLLSALLSLLLPLLIGRIIDALL-ADLGELLELLLLLLLLALLGGVLRALQSYL 75 (567)
T ss_pred HHHHHHHHH-HH-H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555655 33 2 444555555567788888999999998887 222222222222222222223334444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001511 168 TGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYA 246 (1064)
Q Consensus 168 ~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~ 246 (1064)
...++ ..+..++|.++|+++.++|+++|++. .++..+|+++|++.+...+......+...++.. +....++++.
T Consensus 76 ~~~~~----~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 150 (567)
T COG1132 76 GSRLG----QKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLL-IGSLVLLFSL 150 (567)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHH
Confidence 55554 45788899999999999999999875 579999999999998877666533333233222 2234556678
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q 001511 247 SPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRV 326 (1064)
Q Consensus 247 ~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~ 326 (1064)
+|.+++++++.+|+..++..+++++..+...+.++..+++.....+..++++.||.|+.++.+.+++.+..++......+
T Consensus 151 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~ 230 (567)
T COG1132 151 SWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLR 230 (567)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888877888888888888888888888999999999999999876555555544443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 327 VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRL 406 (1064)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~ 406 (1064)
..++.+...++...+.......+++++.+. ...+..++|. +.+++ .+...++.++..+......+++.
T Consensus 231 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~--~~~~~----~~~~~~~~~~~~l~~~~~~~~~~ 298 (567)
T COG1132 231 ---ASRLEALLAPLMLLLSSLGTVLVLALGGFL---VLSGSLTVGA--LAAFI----LYLLRLLTPILQLGEVVSLLQRA 298 (567)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCCHhH--HHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222222222222222222221111 1122234553 33433 33455667888888999999999
Q ss_pred HHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhH
Q 001511 407 SGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSS 486 (1064)
Q Consensus 407 ~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKST 486 (1064)
..+++|++++++.+++....... .....+.|+|+||+|.|++++++|+|+||++++||++||||||||||||
T Consensus 299 ~~a~~ri~~~l~~~~~~~~~~~~--------~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKST 370 (567)
T COG1132 299 SAAAERLFELLDEEPEVEDPPDP--------LKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKST 370 (567)
T ss_pred HHHHHHHHHHHcCCccccCCCCC--------CCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHH
Confidence 99999999999876553321110 1112456999999999987789999999999999999999999999999
Q ss_pred HHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCC
Q 001511 487 LFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL 560 (1064)
Q Consensus 487 Ll~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L 560 (1064)
|+++|+|+|+|++|+|.+||+| .++|++|++|||||++|++||+|||.++.+. .+++++.++++.+++
T Consensus 371 l~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~------at~eei~~a~k~a~~ 444 (567)
T COG1132 371 LIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPD------ATDEEIEEALKLANA 444 (567)
T ss_pred HHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCC------CCHHHHHHHHHHhCh
Confidence 9999999999999999999976 4689999999999999999999999998754 578999999999999
Q ss_pred hhHHhcCCCCccc--C-CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccCh
Q 001511 561 EYLLDRYPPEKEI--N-WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRP 635 (1064)
Q Consensus 561 ~~~~~~~p~~~~~--~-~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l 635 (1064)
++++.++|.++++ + .|..||||||||++||||++++|+++|||||||+||+++|..+++.+++ .++|+|+|+||+
T Consensus 445 ~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRl 524 (567)
T COG1132 445 HEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRL 524 (567)
T ss_pred HHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccH
Confidence 9999999976554 3 6789999999999999999999999999999999999999999998864 478999999999
Q ss_pred hHHHhcCEEEEEeCC
Q 001511 636 ALVAFHDVVLSLDGE 650 (1064)
Q Consensus 636 ~~i~~~D~Il~l~~~ 650 (1064)
++++.||+|+|||++
T Consensus 525 sti~~aD~IiVl~~G 539 (567)
T COG1132 525 STIKNADRIIVLDNG 539 (567)
T ss_pred hHHHhCCEEEEEECC
Confidence 999999999999976
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-61 Score=628.78 Aligned_cols=533 Identities=14% Similarity=0.162 Sum_probs=381.4
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1064)
Q Consensus 87 ~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~y 166 (1064)
.+.++++|..+..+. .+++.++++++...+...++.+.+.+++.+.... .....++ .++++.++..+..|
T Consensus 46 ~~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~--~~~~~~~----~~~~~~i~~~~~~~ 115 (1466)
T PTZ00265 46 PFFLPFKCLPASHRK----LLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE--NVNDIIF----SLVLIGIFQFILSF 115 (1466)
T ss_pred cHHHHHhcCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hHHHHHH----HHHHHHHHHHHHHH
Confidence 466777777543221 3555566666666677788888888888654221 1111111 11112222333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCC-CChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRI-THPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1064)
Q Consensus 167 l~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~~-~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~ 245 (1064)
+..++......++..++|.++|++++++|++||+... +...+|+++|++.+...+...+..++..++. ++.+++++++
T Consensus 116 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~-~i~~~i~~~~ 194 (1466)
T PTZ00265 116 ISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASA-FLGLYIWSLF 194 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4444444555558889999999999999999998764 4778888888888777766666666555443 2344566778
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 001511 246 ASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMR 325 (1064)
Q Consensus 246 ~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~ 325 (1064)
++|.|++++++.+|+..++..++.+++.+...+.++..++.....++...++++||+|++|+.+.+++++..++..+..
T Consensus 195 ~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~- 273 (1466)
T PTZ00265 195 KNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYI- 273 (1466)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHH-
Confidence 9999999999988988888888888887777777777788888999999999999999999999866655444433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccC---------CccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 326 VVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKP---------DTSTLGRAKMLSNLRYHTSVIISLFQSLGTL 396 (1064)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~---------~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l 396 (1064)
.+.....++..++...+.....+++++ +|+.+.. +..+.| .+++.+.+. +. .+..+..+
T Consensus 274 --~k~~~~~~~~~~~~~~~~~~~~~l~~~----~G~~lv~~g~~~~~~~~~~t~g--~v~~~~~~~---l~-~~~~l~~i 341 (1466)
T PTZ00265 274 --LKANFMESLHIGMINGFILASYAFGFW----YGTRIIISDLSNQQPNNDFHGG--SVISILLGV---LI-SMFMLTII 341 (1466)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCcccccccccchh--HHHHHHHHH---HH-HHHHHHHH
Confidence 223333343333332222223333333 3332221 122333 233322111 11 11223444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC--CeeeeeceEEEeCCCEE
Q 001511 397 SISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNL 474 (1064)
Q Consensus 397 ~~~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~--~~~L~~vsl~i~~Ge~v 474 (1064)
......++.+..+++|++++++.+++....... .. ....+.|+++||+|.|++. .++|+|+||+|++||++
T Consensus 342 ~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~------~~-~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~v 414 (1466)
T PTZ00265 342 LPNITEYMKSLEATNSLYEIINRKPLVENNDDG------KK-LKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTY 414 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC------cc-CCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEE
Confidence 556678888999999999999876543211100 00 0112369999999999753 47999999999999999
Q ss_pred EEEcCCCCchhHHHHHhcccCCCCccEEEeC-CCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCC------
Q 001511 475 LITGPNGSGKSSLFRVLGGLWPLVSGHIAKP-GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQ------ 541 (1064)
Q Consensus 475 aIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~-g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~------ 541 (1064)
+|+||||||||||+++|+|+++|++|+|.++ |.+ ..+|++|+||||+|.+|++||+|||.++.....
T Consensus 415 aIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~ 494 (1466)
T PTZ00265 415 AFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALS 494 (1466)
T ss_pred EEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhc
Confidence 9999999999999999999999999999994 554 246889999999999999999999998742100
Q ss_pred ---------------------------------------------cCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---
Q 001511 542 ---------------------------------------------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI--- 573 (1064)
Q Consensus 542 ---------------------------------------------~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~--- 573 (1064)
.....+++++.++++.++++++++++|.++++
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg 574 (1466)
T PTZ00265 495 NYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG 574 (1466)
T ss_pred cccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeC
Confidence 00124678899999999999999999987654
Q ss_pred CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeC
Q 001511 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 574 ~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
..|.+|||||||||+|||||+++|+|||||||||+||+.++..+++.+++ .|+|+|+||||+++++.||+|++|++
T Consensus 575 ~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654 (1466)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeC
Confidence 35789999999999999999999999999999999999999999988865 37999999999999999999999987
Q ss_pred C
Q 001511 650 E 650 (1064)
Q Consensus 650 ~ 650 (1064)
+
T Consensus 655 g 655 (1466)
T PTZ00265 655 R 655 (1466)
T ss_pred C
Confidence 4
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-62 Score=595.17 Aligned_cols=533 Identities=17% Similarity=0.161 Sum_probs=391.6
Q ss_pred ccChHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH
Q 001511 82 KGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMH 161 (1064)
Q Consensus 82 ~~~~~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~ 161 (1064)
++-|+.+++++++.+++++. ++..+++.++.+.+....|.+.++++|.+........ ..++..+++.++..++.
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (592)
T PRK10790 5 SQLWPTLKRLLAYGSPWRKP-----LGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL-GLVAGLAAAYVGLQLLA 78 (592)
T ss_pred hhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHH
Confidence 34456677777777777663 4455566666677777889999999998764332111 11111122222223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 162 STSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTW 240 (1064)
Q Consensus 162 ~~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~ 240 (1064)
.+..|+..++..+....+..+++.++|+++...|.++|++. .++..+|+++|++.+...+...+..++..++..+. ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~-~~ 157 (592)
T PRK10790 79 AGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGA-ML 157 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 45667777777777777889999999999999999999765 67999999999999887776666555555443322 23
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 001511 241 RLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKAL 320 (1064)
Q Consensus 241 ~l~~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l 320 (1064)
.++++++|.+++++++.+|+..++..++.+...+...+.++..+++.....+..+++++||.|+.|+.+.+++.+..++.
T Consensus 158 ~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~ 237 (592)
T PRK10790 158 VAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSH 237 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44566799999887777776655555556666666666666667777777888889999999999998887777666554
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 321 TRHMRVVLHDH-WWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSIS 399 (1064)
Q Consensus 321 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~ 399 (1064)
.+...+..+.. .....+..++. ......+++ +.|....+..++|. +++++ .+...+..|+..+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~g~is~g~--l~a~~----~~~~~~~~pl~~l~~~ 304 (592)
T PRK10790 238 YMARMQTLRLDGFLLRPLLSLFS---ALILCGLLM----LFGFSASGTIEVGV--LYAFI----SYLGRLNEPLIELTTQ 304 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHCCCcCHHH--HHHHH----HHHHHHHHHHHHHHHH
Confidence 44332222111 11111111111 111111111 11122234445553 33333 2345566788888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcC
Q 001511 400 SRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGP 479 (1064)
Q Consensus 400 ~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~ 479 (1064)
...+++...+++|+.++++.+++... . . . .....+.|+++||+|.|++++++|+|+||++++||+++|+|+
T Consensus 305 ~~~~~~~~~s~~ri~~~l~~~~~~~~-~-~-~------~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~ 375 (592)
T PRK10790 305 QSMLQQAVVAGERVFELMDGPRQQYG-N-D-D------RPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGH 375 (592)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCC-C-C-c------cCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECC
Confidence 99999999999999999875433110 0 0 0 011235699999999998667899999999999999999999
Q ss_pred CCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHH
Q 001511 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE 553 (1064)
Q Consensus 480 sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~ 553 (1064)
||||||||+++|+|+|+|++|+|.+||.+ .++|++|+||||+|++|++|++|||.++. . .+++++.+
T Consensus 376 SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~------~~d~~i~~ 448 (592)
T PRK10790 376 TGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-D------ISEEQVWQ 448 (592)
T ss_pred CCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-C------CCHHHHHH
Confidence 99999999999999999999999999975 36789999999999999999999999874 1 46889999
Q ss_pred HHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEE
Q 001511 554 LLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSC 628 (1064)
Q Consensus 554 ~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~Tv 628 (1064)
+++.+|++++++++|.+.++ +.|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++ .++|+
T Consensus 449 a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tv 528 (592)
T PRK10790 449 ALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTL 528 (592)
T ss_pred HHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999986654 35789999999999999999999999999999999999999999998876 37999
Q ss_pred EEEccChhHHHhcCEEEEEeCC
Q 001511 629 ITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 629 I~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|+||||++.++.+|+|++|+++
T Consensus 529 IivtHr~~~l~~~D~ii~l~~G 550 (592)
T PRK10790 529 VVIAHRLSTIVEADTILVLHRG 550 (592)
T ss_pred EEEecchHHHHhCCEEEEEECC
Confidence 9999999999999999999874
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=583.23 Aligned_cols=511 Identities=19% Similarity=0.209 Sum_probs=380.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTR 186 (1064)
Q Consensus 107 ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~ 186 (1064)
++..+++.++.+.+++..|++.++++|.+...+.. . ..+....++++++.++..+..|+..++..++...+..++|.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 82 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAGEP-L-AELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRER 82 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777788889999999999987522111 1 111112222222333344556667777777777788999999
Q ss_pred HHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 001511 187 YFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMM 265 (1064)
Q Consensus 187 ~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~l~~~i~ 265 (1064)
+|+++.+.|..+|++. .++..+|+++|++.+.+.+...+..++..++..++ ...++++++|.+++++++.+|+..++.
T Consensus 83 l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~~~l~~~~l~~~~~ 161 (529)
T TIGR02857 83 LLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLA-ILAAVFPADWISGLILLLTAPLIPIFM 161 (529)
T ss_pred HHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999764 67999999999999887766555554444433322 223455679998888887777766666
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 266 RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYL 345 (1064)
Q Consensus 266 ~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1064)
..+.++..+...+.++..+++.....+..+++++||.|+.|+.+.+++++..++..+...+..+.......+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 238 (529)
T TIGR02857 162 ILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA--- 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 67777777777777778888888888888899999999999999887777766666544333222222222222211
Q ss_pred HHHHHHHHhhhhhhccc-ccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcc
Q 001511 346 GATVAVILIIEPFFAGN-LKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELS 424 (1064)
Q Consensus 346 ~~~~~~il~~~~~~~g~-l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~~ 424 (1064)
.....++++ ++|. ...+..++|. +++++. +...++.|+..+......+++...+++|+.++++.+++..
T Consensus 239 ~~~~~~~~~----~~~~~~~~g~~t~g~--~~~~~~----~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~ 308 (529)
T TIGR02857 239 TLSVALVAV----YIGFRLLAGDLDLAT--GLFVLL----LAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA 308 (529)
T ss_pred HHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 111111111 1111 1133446653 333332 2345567788888888999999999999999987432211
Q ss_pred cCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEE
Q 001511 425 IEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503 (1064)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~ 503 (1064)
. . . + . . ....+.|+++||+|.|+++ +++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.
T Consensus 309 ~-~-~-~--~--~-~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~ 380 (529)
T TIGR02857 309 G-K-A-P--V--T-AAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380 (529)
T ss_pred C-C-c-C--C--C-CCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 0 0 0 0 0 0 0112469999999999865 4799999999999999999999999999999999999999999999
Q ss_pred eCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---C
Q 001511 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---N 574 (1064)
Q Consensus 504 i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~ 574 (1064)
+||.+ +++|++++||||+|++|++|++|||.++.+. .+++++.++++.++++++++++|.+.++ +
T Consensus 381 ~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~------~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e 454 (529)
T TIGR02857 381 VNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPD------ASDAEIRRALERAGLDEFVAALPQGLDTLIGE 454 (529)
T ss_pred ECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCC------CCHHHHHHHHHHcCcHHHHHhCcccccchhcc
Confidence 99975 4578899999999999999999999987532 4678999999999999999999976554 3
Q ss_pred CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEE
Q 001511 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSL 647 (1064)
Q Consensus 575 ~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l 647 (1064)
+|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++ .++|+|+||||+++++.||+|++|
T Consensus 455 ~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 6889999999999999999999999999999999999999999998876 489999999999999999999975
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-61 Score=589.57 Aligned_cols=528 Identities=17% Similarity=0.171 Sum_probs=389.2
Q ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 86 KSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSK 165 (1064)
Q Consensus 86 ~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1064)
+.++++++++++++.. +...+++.++...+++..|.+.+.++|.+.... .+...++ +++++.++..+..
T Consensus 5 ~~~~~l~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~--~~~~~~~----~~~~~~~~~~~~~ 73 (588)
T PRK13657 5 RLYARVLQYLGAEKRL-----GILLAVANVLLAAATFAEPILFGRIIDAISGKG--DIFPLLA----AWAGFGLFNIIAG 73 (588)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cHHHHHH----HHHHHHHHHHHHH
Confidence 4567777777776653 555666666667788888999999999876432 1111111 1111122223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1064)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~ 244 (1064)
++...+..+....+..+++.++|+++.+.|..++++. .++..+|+++|++.+...+...+...+..++..+ ..+.+++
T Consensus 74 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 152 (588)
T PRK13657 74 VLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALV-VLLPLAL 152 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 5555555555555666677899999999999998764 6689999999999987666666665555544332 2334456
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001511 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1064)
Q Consensus 245 ~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1064)
+++|.+++++++.+++..++...+.++..+...+.++..+++.....+..+++++||.|+.++.+.+++.+..++..+..
T Consensus 153 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~ 232 (588)
T PRK13657 153 FMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQ 232 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 78999998888777777777777778887777777777788888888888899999999999999888888777776654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1064)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l 403 (1064)
.+..+..........+.. ......+++ +++.. ..+..++|. +++++. ++..++.++..+......+
T Consensus 233 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~g~~~v~~g~lt~g~--~~a~~~----l~~~~~~~l~~l~~~~~~~ 299 (588)
T PRK13657 233 MPVLSWWALASVLNRAAS---TITMLAILV----LGAALVQKGQLRVGE--VVAFVG----FATLLIGRLDQVVAFINQV 299 (588)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHcCCcCHHH--HHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 433322222222222211 111111111 11111 123446654 333332 2345567777888888888
Q ss_pred HHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCc
Q 001511 404 NRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSG 483 (1064)
Q Consensus 404 ~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsG 483 (1064)
.....+.+|+.++++.+++....... .......+.|+++||+|.|++++++|+|+||++++||+++|+||||||
T Consensus 300 ~~~~~~~~~i~~l~~~~~~~~~~~~~------~~~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsG 373 (588)
T PRK13657 300 FMAAPKLEEFFEVEDAVPDVRDPPGA------IDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAG 373 (588)
T ss_pred HHHHHHHHHHHHHhCCCcccCCCCCC------CCcCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCC
Confidence 88999999999987754332110000 000112346999999999986567999999999999999999999999
Q ss_pred hhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHh
Q 001511 484 KSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557 (1064)
Q Consensus 484 KSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~ 557 (1064)
||||+|+|+|+|+|++|+|.+||.+ .++|++|+||||+|++|++|++|||.++.+. .+++++.++++.
T Consensus 374 KSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~------~~d~~i~~al~~ 447 (588)
T PRK13657 374 KSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPD------ATDEEMRAAAER 447 (588)
T ss_pred HHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCC------CCHHHHHHHHHH
Confidence 9999999999999999999999975 3578999999999999999999999987432 468889999999
Q ss_pred cCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEc
Q 001511 558 VDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITIS 632 (1064)
Q Consensus 558 ~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~It 632 (1064)
++++++++++|.+.++ ++|.+||||||||++|||||+++|+++|||||||+||+++++.+++.+++ .++|+|+||
T Consensus 448 ~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiit 527 (588)
T PRK13657 448 AQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIA 527 (588)
T ss_pred hCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 9999999999976554 46789999999999999999999999999999999999999999998876 379999999
Q ss_pred cChhHHHhcCEEEEEeCC
Q 001511 633 HRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 633 H~l~~i~~~D~Il~l~~~ 650 (1064)
||++.++.+|+|++|+++
T Consensus 528 Hr~~~~~~~D~ii~l~~G 545 (588)
T PRK13657 528 HRLSTVRNADRILVFDNG 545 (588)
T ss_pred ecHHHHHhCCEEEEEECC
Confidence 999999999999999875
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=559.12 Aligned_cols=578 Identities=34% Similarity=0.578 Sum_probs=479.6
Q ss_pred cccccccChHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHH
Q 001511 77 KANQKKGGLKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFL 156 (1064)
Q Consensus 77 ~~~~~~~~~~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~ 156 (1064)
..+.|+..++.+..|.+++.|...++..+++.+-.++++.+|+++..++.+.|.++..++.++...|...++.|+++.+.
T Consensus 90 e~~~N~~f~k~l~~L~Kilip~vfc~e~gll~~hs~~Li~RTfLSl~VA~LdGqlVk~Ivrk~~r~F~~~LlkW~liaiP 169 (728)
T KOG0064|consen 90 EPAKNSQFLKRLNVLSKILIPTVFCKETGLLTAQSFFLISRTFLSLFVAKLDGQLVKNIVRKRGRQFLWDLLKWFLIAIP 169 (728)
T ss_pred ccccCHHHHHHHHHHHHHhcchHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHhhhcc
Confidence 34444455677899999999999999998899999999999999999999999999999999888888878899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 157 LSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGL 236 (1064)
Q Consensus 157 ~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~ 236 (1064)
++++++.++|+...++..+|.+++++....||++-.||.+++.|+++.|+|+++|+||..|++.+..++.++..++++.+
T Consensus 170 AtFvNS~Iryle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~ 249 (728)
T KOG0064|consen 170 ASFVNSAIRYLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLI 249 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHh-hhhHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Q 001511 237 LYTWRLCSYA-SPKYV--FWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHI 313 (1064)
Q Consensus 237 ~~~~~l~~~~-~~~L~--li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l 313 (1064)
++++.++-.. +.+.. ..+.+.+.+...+.+.++|++.++..++..+.|.+|+.|+++.+|.|.|++|++.+.|.+.+
T Consensus 250 l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql 329 (728)
T KOG0064|consen 250 LISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQV 329 (728)
T ss_pred HHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHH
Confidence 8777665321 11111 12233344566788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCC-c---cchhHHHHHHHHHHHHHHHHHH
Q 001511 314 QQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPD-T---STLGRAKMLSNLRYHTSVIISL 389 (1064)
Q Consensus 314 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~-~---~tlG~~~l~a~l~~~~~~l~~~ 389 (1064)
++.|+.+...+....+...|+.+...++.+|.++..+++++..|.+.+....+ . ...|.- ....+.-.-..+.+.
T Consensus 330 ~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~s-rt~~f~t~r~LL~sa 408 (728)
T KOG0064|consen 330 DESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNS-RTKEFITNRRLLLSA 408 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchh-HHHHHHHHHHHHHHH
Confidence 99999999998888888899999999999998887777766666554333221 1 111110 111111122345677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccC---CCCC-C----------CCCCC----CCCCCCCcEEEEeeE
Q 001511 390 FQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIE---DKSP-Q----------RNGSR----NYFSEANYIEFSGVK 451 (1064)
Q Consensus 390 ~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~~~~---~~~~-~----------~~~~~----~~~~~~~~i~~~nvs 451 (1064)
..++..+..++.+++++.++..|++++++.-.+.... .... + .++.. ........|.++||.
T Consensus 409 AdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIp 488 (728)
T KOG0064|consen 409 ADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIP 488 (728)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCc
Confidence 7889999999999999999999999876543332210 0000 0 00000 000123459999999
Q ss_pred EEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHH
Q 001511 452 VVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRD 531 (1064)
Q Consensus 452 ~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~e 531 (1064)
+..|.+..++..+||+|++|-.+.|+||||||||+|+|+|.|+||...|...++.. .+|.|+||.||...||+||
T Consensus 489 vItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~-----~~mFYIPQRPYms~gtlRD 563 (728)
T KOG0064|consen 489 VITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRP-----NNIFYIPQRPYMSGGTLRD 563 (728)
T ss_pred eeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCC-----cceEeccCCCccCcCcccc
Confidence 99998889999999999999999999999999999999999999999999988763 4699999999999999999
Q ss_pred HhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhHHhcCC-CCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 001511 532 QLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYP-PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609 (1064)
Q Consensus 532 ni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~~~~~p-~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaL 609 (1064)
+|.||....+.. ....|.++..+|+.+.|++.+.+-. .+...+|-+.||||||||+++||.++|+|+..+|||+|||+
T Consensus 564 QIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAv 643 (728)
T KOG0064|consen 564 QIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAV 643 (728)
T ss_pred eeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhccc
Confidence 999997643222 2367889999999999999888754 23445788999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCcEEEEEccChhHHHhcCEEEEEeCCCceEEeecCC
Q 001511 610 TTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRD 660 (1064)
Q Consensus 610 D~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~~g~~~~~~~~~ 660 (1064)
.++.|..++++.+..|.+.|.||||+++.+++.+.+..|++|+|.+.+-++
T Consensus 644 sidvE~~i~~~ak~~gi~llsithrpslwk~h~~ll~~dg~g~~q~~~ln~ 694 (728)
T KOG0064|consen 644 SIDVEGKIFQAAKDAGISLLSITHRPSLWKYHTHLLEFDGEGGWQFRALNT 694 (728)
T ss_pred ccchHHHHHHHHHhcCceEEEeecCccHHHHHHHHHhccCCCCeeeccCCh
Confidence 999999999999999999999999999999999999999999999875554
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-61 Score=586.76 Aligned_cols=527 Identities=19% Similarity=0.231 Sum_probs=399.7
Q ss_pred HHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 89 QVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYIT 168 (1064)
Q Consensus 89 ~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~ 168 (1064)
+.++++++++++ .++..+++.++...+....+.+.+.+++......... .+....++++++.++..+..|+.
T Consensus 3 ~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~ 74 (571)
T TIGR02203 3 RRLWSYVRPYKA-----GLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRS---VLWWVPLVVIGLAVLRGICSFVS 74 (571)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchh---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666776655 3555555666667777788888888888766533211 11111222222333445566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001511 169 GTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYAS 247 (1064)
Q Consensus 169 ~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~ 247 (1064)
.++..+....+...++..+|+++...|.+++++. .++..+|+++|++.+.+.+...+...+..++..++ ..+++++++
T Consensus 75 ~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~ 153 (571)
T TIGR02203 75 TYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIG-LFIVLLYYS 153 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 7777777777888999999999999999998764 56899999999999887776666555555443333 334556789
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Q 001511 248 PKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVV 327 (1064)
Q Consensus 248 ~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~ 327 (1064)
|.+++++++..|+..++..++.++.++...+.++..+++.....+..+++++||.+++++.+..++++.+++..+...+.
T Consensus 154 ~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (571)
T TIGR02203 154 WQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKM 233 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888888888888888888899999999999999999999888887777766654443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 328 LHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRL 406 (1064)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~ 406 (1064)
.+.......+..++. .....++++ +++.. ..+..|.|. ++++. .++..++.|+..+......++++
T Consensus 234 ~~~~~~~~~~~~~~~---~~~~~~~~~----~g~~~~~~g~lt~g~--l~a~~----~~~~~~~~pl~~l~~~~~~~~~~ 300 (571)
T TIGR02203 234 TSAGSISSPITQLIA---SLALAVVLF----IALFQAQAGSLTAGD--FTAFI----TAMIALIRPLKSLTNVNAPMQRG 300 (571)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHcCCCCHhH--HHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222222222221 111112222 11111 223446654 33333 23455668888889999999999
Q ss_pred HHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCchh
Q 001511 407 SGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKS 485 (1064)
Q Consensus 407 ~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsGKS 485 (1064)
..+.+|+.++++.+++.+... . ......+.|+++||+|+|++ ++++|+|+||++++||+++|+|+||||||
T Consensus 301 ~~~~~ri~~~l~~~~~~~~~~--~------~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKS 372 (571)
T TIGR02203 301 LAAAESLFTLLDSPPEKDTGT--R------AIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKS 372 (571)
T ss_pred HHHHHHHHHHHcCCCCCCCCC--C------CCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHH
Confidence 999999999987654422110 0 00112346999999999975 46799999999999999999999999999
Q ss_pred HHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcC
Q 001511 486 SLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD 559 (1064)
Q Consensus 486 TLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~ 559 (1064)
||+++|+|+++|++|+|.+||.+ .++|++++||||+|++|++|++|||.++... +.+++++.++++.+|
T Consensus 373 TLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~-----~~~~~~i~~~l~~~~ 447 (571)
T TIGR02203 373 TLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTE-----QADRAEIERALAAAY 447 (571)
T ss_pred HHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCC-----CCCHHHHHHHHHHcC
Confidence 99999999999999999999975 3578899999999999999999999987531 257889999999999
Q ss_pred ChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccC
Q 001511 560 LEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHR 634 (1064)
Q Consensus 560 L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~ 634 (1064)
++++++++|.+.++ ++|.+||||||||++||||++++|+++|||||||+||+++++.+++.+++. ++|+|+||||
T Consensus 448 l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~ 527 (571)
T TIGR02203 448 AQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHR 527 (571)
T ss_pred hHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehh
Confidence 99999999976554 468899999999999999999999999999999999999999999988764 8999999999
Q ss_pred hhHHHhcCEEEEEeCC
Q 001511 635 PALVAFHDVVLSLDGE 650 (1064)
Q Consensus 635 l~~i~~~D~Il~l~~~ 650 (1064)
++.+..||+|++++++
T Consensus 528 ~~~~~~~D~ii~l~~g 543 (571)
T TIGR02203 528 LSTIEKADRIVVMDDG 543 (571)
T ss_pred hHHHHhCCEEEEEeCC
Confidence 9999999999999864
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-61 Score=584.85 Aligned_cols=527 Identities=16% Similarity=0.148 Sum_probs=398.0
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1064)
Q Consensus 87 ~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~y 166 (1064)
.+++++++++++++. ++..+++.++.+.+.+..|++.++++|.+...+. ... .+++.++..++..+..|
T Consensus 6 ~~~~l~~~l~~~k~~-----~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~--~~~----~~~~~~~~~~~~~~~~~ 74 (585)
T TIGR01192 6 VYVRALSYLNVHKNR-----VLLIVIANITLAAITIAEPILFGRIIDAISSKSD--VLP----TLALWAGFGVFNTIAYV 74 (585)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHH----HHHHHHHHHHHHHHHHH
Confidence 467788888888773 5556666677778888999999999998764331 111 11111122334455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1064)
Q Consensus 167 l~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~ 245 (1064)
+..++..++...+..+++.++|+++.++|+++|+++ .++..+|+++|++.+...+...+...+..++..++ ...++++
T Consensus 75 ~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 153 (585)
T TIGR01192 75 LVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFL-LIPTAFA 153 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 777777777777888888999999999999999764 67999999999999887777666666555543333 2334567
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q 001511 246 ASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMR 325 (1064)
Q Consensus 246 ~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~ 325 (1064)
++|.+++++++.+|+..++..++.++.++...+.++..+++.....+..+++++||+|+.|+.+.+++++..++..+...
T Consensus 154 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~ 233 (585)
T TIGR01192 154 MDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQY 233 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 89999999888888877778888888877777777777777888888888999999999999998877777776655443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 326 VVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLN 404 (1064)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~ 404 (1064)
+..+. .+....+...+......++++ +++.+ ..+..++|. +++++.+ ...++.++..+......+.
T Consensus 234 ~~~~~---~~~~~~~~~~~~~~~~~~v~~----~g~~~v~~g~it~g~--l~a~~~~----~~~l~~~~~~l~~~~~~~~ 300 (585)
T TIGR01192 234 PVLDW---WALASGLNRMASTISMMCILV----IGTVLVIKGELSVGE--VIAFIGF----ANLLIGRLDQMSGFITQIF 300 (585)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 33222 222222111111111122222 22222 233446653 3343322 3445577778888888899
Q ss_pred HHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCch
Q 001511 405 RLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGK 484 (1064)
Q Consensus 405 ~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGK 484 (1064)
.+..+.+|+.++++.+++........ ......+.++++||+|.|++++++++|+||++++||+++|+|||||||
T Consensus 301 ~~~~~~~ri~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGK 374 (585)
T TIGR01192 301 EARAKLEDFFDLEDSVFQREEPADAP------ELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGK 374 (585)
T ss_pred HHHHHHHHHHHHHcCCccccCCccCC------CCCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCH
Confidence 99999999999887654322111000 001123469999999999866679999999999999999999999999
Q ss_pred hHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhc
Q 001511 485 SSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558 (1064)
Q Consensus 485 STLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~ 558 (1064)
|||+++|+|+++|++|+|.+||.+ .++|+.++||||+|++|++|++|||.++.+. .+++++.++++.+
T Consensus 375 STL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~------~~~~~~~~a~~~~ 448 (585)
T TIGR01192 375 TTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREG------ATDEEVYEAAKAA 448 (585)
T ss_pred HHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCC------CCHHHHHHHHHHh
Confidence 999999999999999999999965 3568899999999999999999999987432 4678899999999
Q ss_pred CChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEcc
Q 001511 559 DLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISH 633 (1064)
Q Consensus 559 ~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH 633 (1064)
++++++.++|.+.++ ++|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++ .++|+|+|||
T Consensus 449 ~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH 528 (585)
T TIGR01192 449 AAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAH 528 (585)
T ss_pred CcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 999999998875543 46889999999999999999999999999999999999999999998875 3899999999
Q ss_pred ChhHHHhcCEEEEEeCC
Q 001511 634 RPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 634 ~l~~i~~~D~Il~l~~~ 650 (1064)
|++.+..+|+|++|+++
T Consensus 529 ~~~~~~~~d~i~~l~~G 545 (585)
T TIGR01192 529 RLSTVRNADLVLFLDQG 545 (585)
T ss_pred ChHHHHcCCEEEEEECC
Confidence 99999999999999875
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-61 Score=551.55 Aligned_cols=528 Identities=20% Similarity=0.239 Sum_probs=390.2
Q ss_pred HHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 91 LAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVP-LFFQLISENILLCFLLSTMHSTSKYITG 169 (1064)
Q Consensus 91 L~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~~~yl~~ 169 (1064)
+.+++++|++ .+ +.+.+.+++.++....+..+-.++|||+.+....+.. .|.-++. .+.+=...+...+.+|...
T Consensus 4 l~p~i~l~~~-~~-~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p--~a~VR~~aI~Rt~~RY~ER 79 (573)
T COG4987 4 LLPYLRLYKR-HK-FGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLP--SAGVRGLAILRTAARYVER 79 (573)
T ss_pred chHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3478888887 22 2466666677776677788999999999987766542 1111111 1111112233567889888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccC-CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001511 170 TLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASP 248 (1064)
Q Consensus 170 ~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~-~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~ 248 (1064)
..+.++--++..++|.++|+++.-.+.....+ +.+++.+|+++||+.+.+.+..++.+.+.+++...+.. +...+++|
T Consensus 80 lvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~-i~L~f~~~ 158 (573)
T COG4987 80 LVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVT-IGLSFFSI 158 (573)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHH-HHHHHhhH
Confidence 88888877899999999999998877665544 67899999999999999999888888776665443322 23345789
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Q 001511 249 KYVFWILAYVLGAGTMMRNFSPAF-GKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVV 327 (1064)
Q Consensus 249 ~L~li~l~~~~l~~~i~~~~~~~~-~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~ 327 (1064)
.+++.+.+++.+..+++++++.+. ++...+..+..+.+++.......+.....+||+++...+.+.+.-+.+.+..++.
T Consensus 159 ~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~ 238 (573)
T COG4987 159 PLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQ 238 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888776666666666655444 4455666677777777665555566667899999998876666655555544443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 001511 328 LHDHWWFGMIQDFLLKYLGATVA-VILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLS-ISSRRLNR 405 (1064)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~-~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~-~~~~~l~~ 405 (1064)
.+...+.+.+..++ .+..+. .++ |+++....|..+.- +..+.. ..+...++++..+. .....+.+
T Consensus 239 ~~~~~~~~a~~~l~---~g~~v~~~l~----w~a~~~~~G~~~~~-~aa~~l-----l~~f~~~eaf~~L~~~A~~~lgq 305 (573)
T COG4987 239 ARFTGLSDAILLLI---AGLLVIGLLL----WMAAQVGAGALAQP-GAALAL-----LVIFAALEAFEPLAPGAFQHLGQ 305 (573)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHH----HHHhcCcCCCcchh-HHHHHH-----HHHHHHHHHHhhhcchhHHHhhH
Confidence 33333333322221 122221 222 23333333332211 111111 12234445555555 66788999
Q ss_pred HHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCC-eeeeeceEEEeCCCEEEEEcCCCCch
Q 001511 406 LSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGN-VLVENLTLKVEPGSNLLITGPNGSGK 484 (1064)
Q Consensus 406 ~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~-~~L~~vsl~i~~Ge~vaIvG~sGsGK 484 (1064)
...++.|+.++.+.+++...++... ......++++||+|+|++.+ ++|+|+||++++||++||+|+|||||
T Consensus 306 ~~~Sa~Rl~~i~~q~~e~~~~~~~~--------~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGK 377 (573)
T COG4987 306 VIASARRLNDILDQKPEVTFPDEQT--------ATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGK 377 (573)
T ss_pred HHHHHHHHhhhccCCcccCCCcccc--------CCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCH
Confidence 9999999999988777655431111 11122799999999998765 79999999999999999999999999
Q ss_pred hHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhc
Q 001511 485 SSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558 (1064)
Q Consensus 485 STLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~ 558 (1064)
|||+++|.|-|+|++|+|.++|.+ +++|+.|++++|++++|.+|++||+..+.++ .+||+++++++++
T Consensus 378 STllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~------AsDEel~~aL~qv 451 (573)
T COG4987 378 STLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPD------ASDEELWAALQQV 451 (573)
T ss_pred HHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCC------CCHHHHHHHHHHc
Confidence 999999999999999999999975 3478899999999999999999999987654 6899999999999
Q ss_pred CChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEcc
Q 001511 559 DLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISH 633 (1064)
Q Consensus 559 ~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH 633 (1064)
||++++...|.+..+ +.|..||||||||++|||+|++|.+++||||||.|||+.||+++++.+.+ .|+|+|+|||
T Consensus 452 gL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTH 531 (573)
T COG4987 452 GLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTH 531 (573)
T ss_pred CHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEec
Confidence 999999999875544 46889999999999999999999999999999999999999999998876 4999999999
Q ss_pred ChhHHHhcCEEEEEeCC
Q 001511 634 RPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 634 ~l~~i~~~D~Il~l~~~ 650 (1064)
|+..++.+|+|++|+++
T Consensus 532 rL~~le~~drIivl~~G 548 (573)
T COG4987 532 RLRGLERMDRIIVLDNG 548 (573)
T ss_pred ccccHhhcCEEEEEECC
Confidence 99999999999999975
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-61 Score=596.80 Aligned_cols=527 Identities=16% Similarity=0.189 Sum_probs=398.4
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-VPLFFQLISENILLCFLLSTMHSTSK 165 (1064)
Q Consensus 87 ~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1064)
.+.+++++++++++. +...++++++.+.++...|.+.+.++|.++... ...++. ..+.++++.++..+..
T Consensus 126 ~~~~~~~~~~~~~~~-----~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~----l~~~~~~~~~~~~~~~ 196 (694)
T TIGR01846 126 GFSWFIPAIIRYRKQ-----FREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSV----LALAMLAVAIFEPALG 196 (694)
T ss_pred cHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHH----HHHHHHHHHHHHHHHH
Confidence 356677777777663 444555556666777788999999999876432 222211 1122222223344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1064)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~ 244 (1064)
++..++..+...++..+++.++|+++.+.|+++|+++ .++..+|+ +|++.+.+.+...+...+..++..+++ ..+++
T Consensus 197 ~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~ 274 (694)
T TIGR01846 197 GLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVF-LAVMF 274 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 6676666667777889999999999999999999765 67999999 699988776655444444333333333 24566
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001511 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1064)
Q Consensus 245 ~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1064)
+++|.+++++++.+|+..++..++.+++++...+..+..+++.....+...++++||.++.|+.+.+++.+.+++..+..
T Consensus 275 ~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~ 354 (694)
T TIGR01846 275 FYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAAS 354 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHH
Confidence 78999999988888877777777888888887777777778888888888899999999999999988888887776655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1064)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l 403 (1064)
.+..+.......+..++. ....+++++ +++.+ ..+..|+|. ++++. .+...++.|+..+......+
T Consensus 355 ~~~~~~~~~~~~~~~~i~---~~~~~~il~----~g~~lv~~g~it~G~--lia~~----~l~~~~~~pl~~l~~~~~~~ 421 (694)
T TIGR01846 355 FRVTNLGNIAGQAIELIQ---KLTFAILLW----FGAHLVIGGALSPGQ--LVAFN----MLAGRVTQPVLRLAQLWQDF 421 (694)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHhHH----HHHHHHHcCCCCHHH--HHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 443332222222222221 111222222 22222 134456664 33432 23456678888899999999
Q ss_pred HHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCC
Q 001511 404 NRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGS 482 (1064)
Q Consensus 404 ~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGs 482 (1064)
+++..+.+|+.++++.+++..... . .......+.|+++||+|.|+++ +++|+|+||+|++||+++|+|+|||
T Consensus 422 ~~~~~~~~ri~~~l~~~~e~~~~~-~------~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGs 494 (694)
T TIGR01846 422 QQTGIALERLGDILNSPTEPRSAG-L------AALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGS 494 (694)
T ss_pred HHHHHHHHHHHHHHcCCCCccCCC-C------CCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCC
Confidence 999999999999997665432110 0 0001123579999999999754 5799999999999999999999999
Q ss_pred chhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHH
Q 001511 483 GKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 556 (1064)
Q Consensus 483 GKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~ 556 (1064)
|||||+|+|+|+++|++|+|.+||.+ .++|++|+||||+|++|++|++|||.++.+. .+++++.++++
T Consensus 495 GKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~------~~~~~i~~a~~ 568 (694)
T TIGR01846 495 GKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPG------APFEHVIHAAK 568 (694)
T ss_pred CHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCC------CCHHHHHHHHH
Confidence 99999999999999999999999975 3678999999999999999999999986432 46889999999
Q ss_pred hcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEE
Q 001511 557 NVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITI 631 (1064)
Q Consensus 557 ~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~I 631 (1064)
.++++++++++|.+.++ +.|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++. ++|+|+|
T Consensus 569 ~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~i 648 (694)
T TIGR01846 569 LAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIII 648 (694)
T ss_pred HcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999999986554 367899999999999999999999999999999999999999999988763 8999999
Q ss_pred ccChhHHHhcCEEEEEeCC
Q 001511 632 SHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 632 tH~l~~i~~~D~Il~l~~~ 650 (1064)
|||+++++.+|+|++|+++
T Consensus 649 tH~~~~~~~~d~ii~l~~G 667 (694)
T TIGR01846 649 AHRLSTVRACDRIIVLEKG 667 (694)
T ss_pred eCChHHHHhCCEEEEEeCC
Confidence 9999999999999999874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-61 Score=628.30 Aligned_cols=529 Identities=17% Similarity=0.188 Sum_probs=370.9
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hh-HHHHHHHHHHHHHHHHHHHHHHH
Q 001511 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-VP-LFFQLISENILLCFLLSTMHSTS 164 (1064)
Q Consensus 87 ~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~-~~-~~~~~l~~~~~l~~~~~~~~~~~ 164 (1064)
.+.++++.++||++. +++.++++++...+...++.+.+.+++.++... .. ......+.++++.++..++.++.
T Consensus 812 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~ 886 (1466)
T PTZ00265 812 NLRIVYREIFSYKKD-----VTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLK 886 (1466)
T ss_pred hHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888774 444444555666777788889998888765421 11 01111111111111222233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC---CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG---RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWR 241 (1064)
Q Consensus 165 ~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~---~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~ 241 (1064)
.|+...++.+ +..++|.++|++++++|++||++ .++++.+|+++|++.+...+...+..++..++.. +++.+
T Consensus 887 ~~~~~~~~~~----~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~-i~~~~ 961 (1466)
T PTZ00265 887 NYYNNVIGEK----VEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLF-LVSMV 961 (1466)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4455555544 78889999999999999999974 3678999999999998877666555555444432 33344
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001511 242 LCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLM-SK-----------------EQQLEGEYRQLHSRLRTHAESIAFY 303 (1064)
Q Consensus 242 l~~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~-~~-----------------~q~~~~~~r~~~~~l~~~~e~Ik~~ 303 (1064)
++++++|.+++++++.++ ++...+.++.+... .+ .++..++......+...++++|++|
T Consensus 962 ~~~~~~~~l~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~ 1038 (1466)
T PTZ00265 962 MSFYFCPIVAAVLTGTYF---IFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIY 1038 (1466)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHh
Confidence 566778988776654333 22333333322211 11 1222445566778888899999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHH
Q 001511 304 GGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYH 382 (1064)
Q Consensus 304 ~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~ 382 (1064)
+.|+.+.+++.+..++..+...+ ...+.++..++...+...+.+++++ +++.+. .+..++|. +++++.++
T Consensus 1039 ~~e~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~G~~lv~~g~it~g~--l~~~~~~~ 1109 (1466)
T PTZ00265 1039 GLEDYFCNLIEKAIDYSNKGQKR---KTLVNSMLWGFSQSAQLFINSFAYW----FGSFLIRRGTILVDD--FMKSLFTF 1109 (1466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHHHH
Confidence 99999987776666555443322 2233333333332222222233333 333332 34445553 33433221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCC--CCee
Q 001511 383 TSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVL 460 (1064)
Q Consensus 383 ~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~--~~~~ 460 (1064)
.....++..+......++++..+++|++++++.+++.+..+..... . .......+.|+|+||+|.||+ +.++
T Consensus 1110 ----~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~-~-~~~~~~~g~I~f~nVsF~Y~~~~~~~v 1183 (1466)
T PTZ00265 1110 ----LFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIR-I-KNKNDIKGKIEIMDVNFRYISRPNVPI 1183 (1466)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccc-c-ccCCCCCceEEEEEEEEECCCCCCCcc
Confidence 1122345566777888999999999999999876543211100000 0 000112357999999999985 3589
Q ss_pred eeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-------------------------------------------
Q 001511 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL------------------------------------------- 497 (1064)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p------------------------------------------- 497 (1064)
|+|+||+|++|+++|||||||||||||+++|+|+|+|
T Consensus 1184 L~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 (1466)
T PTZ00265 1184 YKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKE 1263 (1466)
T ss_pred ccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999998
Q ss_pred -----------CccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCC
Q 001511 498 -----------VSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL 560 (1064)
Q Consensus 498 -----------~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L 560 (1064)
++|+|.+||.+ .++|++|+||||+|++|++||+|||.++.+. .+++++.++++.+++
T Consensus 1264 ~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~------at~eeI~~A~k~A~l 1337 (1466)
T PTZ00265 1264 GGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKED------ATREDVKRACKFAAI 1337 (1466)
T ss_pred cccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCC------CCHHHHHHHHHHcCC
Confidence 69999999976 4689999999999999999999999998542 578999999999999
Q ss_pred hhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEcc
Q 001511 561 EYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM----GTSCITISH 633 (1064)
Q Consensus 561 ~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~----g~TvI~ItH 633 (1064)
++|+.++|.++++ +.|.+|||||||||||||||+++|+|||||||||+||+++|+.+++.+.+. ++|+|+|||
T Consensus 1338 ~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaH 1417 (1466)
T PTZ00265 1338 DEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH 1417 (1466)
T ss_pred HHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEec
Confidence 9999999987665 367899999999999999999999999999999999999999999988753 899999999
Q ss_pred ChhHHHhcCEEEEEeC
Q 001511 634 RPALVAFHDVVLSLDG 649 (1064)
Q Consensus 634 ~l~~i~~~D~Il~l~~ 649 (1064)
|+++++.||+|++|++
T Consensus 1418 Rlsti~~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1418 RIASIKRSDKIVVFNN 1433 (1466)
T ss_pred hHHHHHhCCEEEEEeC
Confidence 9999999999999997
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-60 Score=576.06 Aligned_cols=530 Identities=20% Similarity=0.240 Sum_probs=391.1
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 87 SLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-VPLFFQLISENILLCFLLSTMHSTSK 165 (1064)
Q Consensus 87 ~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~ 165 (1064)
.++.++++++++++. +...+++.++...++...|.+.+.++|.+.... ...+...+. +.+++.++..+..
T Consensus 5 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 75 (576)
T TIGR02204 5 PLAALWPFVRPYRGR-----VLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFA----FLLVVALVLALGT 75 (576)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHH----HHHHHHHHHHHHH
Confidence 355666777766552 445555666667788888999999998755332 222221111 1112222233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 166 YITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1064)
Q Consensus 166 yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~ 244 (1064)
++..++..+....+..++|..+|+++...|.+++++. .++..+|+++|++.+.+.+...+..++..++..+. ...+++
T Consensus 76 ~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~ 154 (576)
T TIGR02204 76 AARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIG-GLIMMF 154 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5555555566666888999999999999999988764 67899999999999877666555554444433322 223456
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001511 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1064)
Q Consensus 245 ~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1064)
+++|.+++++++.+|+..++..++.++.++..++.++..+++.....+..+++++||.++.|+.+.+++++..++..+..
T Consensus 155 ~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~ 234 (576)
T TIGR02204 155 ITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAA 234 (576)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 67899988888777777777777888888888888888888888899999999999999999999988888887766654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRL 403 (1064)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l 403 (1064)
.+..+...+...+..++ .....+++++ +++.. ..+..++|. +++++. +...++.++..+.....++
T Consensus 235 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~g~~~v~~g~lt~g~--~~~~~~----~~~~~~~pl~~~~~~~~~~ 301 (576)
T TIGR02204 235 RQRIRTRALLTAIVIVL---VFGAIVGVLW----VGAHDVIAGKMSAGT--LGQFVF----YAVMVAGSIGTLSEVWGEL 301 (576)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 43332222222221111 1111111111 22221 123446664 333322 2344567888888899999
Q ss_pred HHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC--CeeeeeceEEEeCCCEEEEEcCCC
Q 001511 404 NRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNG 481 (1064)
Q Consensus 404 ~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~--~~~L~~vsl~i~~Ge~vaIvG~sG 481 (1064)
.++..+.+|+.++++.+++.+..... ...+ .+..+.|+++||+|.|+++ +++|+|+||++++||.++|+||||
T Consensus 302 ~~~~~~~~ri~~~l~~~~~~~~~~~~----~~~~-~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sG 376 (576)
T TIGR02204 302 QRAAGAAERLIELLQAEPDIKAPAHP----KTLP-VPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSG 376 (576)
T ss_pred HHHHHHHHHHHHHhCCCCcCCCCCCC----ccCC-cCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCC
Confidence 99999999999998765432211000 0000 1123469999999999753 579999999999999999999999
Q ss_pred CchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHH
Q 001511 482 SGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELL 555 (1064)
Q Consensus 482 sGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l 555 (1064)
||||||+|+|+|+++|++|+|.+||.+ .+++++|+|+||+|++|++|++|||.++.+. .+++++.+++
T Consensus 377 sGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~------~~~~~~~~~l 450 (576)
T TIGR02204 377 AGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPD------ATDEEVEAAA 450 (576)
T ss_pred CCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCC------CCHHHHHHHH
Confidence 999999999999999999999999965 3567899999999999999999999987542 3678999999
Q ss_pred HhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEE
Q 001511 556 KNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCIT 630 (1064)
Q Consensus 556 ~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ 630 (1064)
+.+++.++++++|.+.++ ++|.+||||||||++||||++++|+++|||||||+||+++++.+++.+++ .++|+|+
T Consensus 451 ~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~Ii 530 (576)
T TIGR02204 451 RAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLI 530 (576)
T ss_pred HHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999876543 46889999999999999999999999999999999999999999988876 4899999
Q ss_pred EccChhHHHhcCEEEEEeCC
Q 001511 631 ISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 631 ItH~l~~i~~~D~Il~l~~~ 650 (1064)
||||++.+..+|+|++++++
T Consensus 531 itH~~~~~~~~d~vi~l~~g 550 (576)
T TIGR02204 531 IAHRLATVLKADRIVVMDQG 550 (576)
T ss_pred EecchHHHHhCCEEEEEECC
Confidence 99999999999999999875
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-59 Score=542.07 Aligned_cols=511 Identities=17% Similarity=0.214 Sum_probs=388.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001511 113 IVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMA 192 (1064)
Q Consensus 113 l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~ 192 (1064)
+.++...+....+++....++.++.... +.. +...++.+++..++-.+..+...+++.+--..+...+|+..+++..
T Consensus 8 l~~l~~i~~i~qa~llA~~l~~l~~~~~--~~~-l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~ 84 (559)
T COG4988 8 LAVLSGIAIIAQAALLADILTKLIEGQL--FQS-LLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLA 84 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444555666666666665542 111 1112222222334455667788888888888888999999999999
Q ss_pred ccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH
Q 001511 193 YYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPA 271 (1064)
Q Consensus 193 ~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~l~~~i~~~~~~~ 271 (1064)
..+..+.++. .++..+.+++-|+.+...+..++...+.+.+.-++ .++..++.||.-++++++.+|++-+.+..++..
T Consensus 85 ~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~-i~i~v~~~~w~aalIllit~PlIPlfMilvg~~ 163 (559)
T COG4988 85 KLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLL-ILIAIFFFNWAAALILLITAPLIPLFMILVGLA 163 (559)
T ss_pred hCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998887664 57889999999999988888887777666543322 234456789999999998888887777778887
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 272 FGKLMSKEQQLEGEYRQ-LHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVA 350 (1064)
Q Consensus 272 ~~k~~~~~q~~~~~~r~-~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1064)
-++..+++-....++.. ++++++ +.+++|+|++.+...+++.+...+..+...+..+..+....+..++. +++.+++
T Consensus 164 a~~~s~~~~~~~~~ls~~FLD~Lr-GL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa-~lsiAlv 241 (559)
T COG4988 164 AKDASEKQFSALARLSGHFLDRLR-GLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFA-YLSIALV 241 (559)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 77777666666666554 455555 88999999999999888888777777766666666666666655543 2333332
Q ss_pred HHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCC
Q 001511 351 VILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSP 430 (1064)
Q Consensus 351 ~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~ 430 (1064)
.+.+...+.+. |+.++..+.+ ++..-..+|.|+.+++..+|.-....+++|.++.+++.+.+........
T Consensus 242 Av~~g~~ll~~----G~ltl~~~l~------~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~ 311 (559)
T COG4988 242 AVYIGFRLLGE----GDLTLFAGLF------VLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKA 311 (559)
T ss_pred HHHHHHHHHcc----CCccHHHHHH------HHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcccc
Confidence 22221112220 3445543221 1223468899999999999999999999999999988665432211100
Q ss_pred CCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC--
Q 001511 431 QRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-- 508 (1064)
Q Consensus 431 ~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-- 508 (1064)
. .. ......++.+|+++.|++++++++|+||++++|+.++|||+||||||||+++|+|+.+|++|+|.+||++
T Consensus 312 ~--~~---~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~ 386 (559)
T COG4988 312 E--VA---NEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLR 386 (559)
T ss_pred c--cc---cCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCcccc
Confidence 0 00 0012345666999999988899999999999999999999999999999999999999999999999976
Q ss_pred ----ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcCh
Q 001511 509 ----SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSL 581 (1064)
Q Consensus 509 ----~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSG 581 (1064)
.++|+++++|+|+|++|.+|++|||.++.+. .+++++.++++++++.++++. |.+.++ +.|..|||
T Consensus 387 ~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~------~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSg 459 (559)
T COG4988 387 DLSPEAWRKQISWVSQNPYLFAGTIRENILLARPD------ASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSG 459 (559)
T ss_pred ccCHHHHHhHeeeeCCCCccccccHHHHhhccCCc------CCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCH
Confidence 4689999999999999999999999998654 578999999999999999999 876553 46889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCCC
Q 001511 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEG 651 (1064)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~g 651 (1064)
||+|||++||||+++++++|+||||++||.++|+.+.+.+.+ +++|+|+||||+..++.+|+|++||++.
T Consensus 460 GQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~ 531 (559)
T COG4988 460 GQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGR 531 (559)
T ss_pred HHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCc
Confidence 999999999999999999999999999999999999998876 4899999999999999999999999763
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-59 Score=569.33 Aligned_cols=504 Identities=16% Similarity=0.168 Sum_probs=372.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 001511 118 TALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKIS 197 (1064)
Q Consensus 118 t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~ 197 (1064)
..+.+..|.+.+.++|.+...... ... +..+++++++..++..+..|+..++..+...++..++|.++|+++...|.+
T Consensus 8 ~~~~~~~p~~~~~iid~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ 85 (569)
T PRK10789 8 AMLQLIPPKVVGIIVDGVTEQHMT-TGQ-ILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPE 85 (569)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcc-hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 445556788888888876543211 111 111122222222333445566666666666678889999999999999999
Q ss_pred cccC-CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001511 198 HVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLM 276 (1064)
Q Consensus 198 ~~~~-~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~ 276 (1064)
+|++ ..++..+|+++|++.+...+...+..++..++..+++.+.++++++|.+++++++.+|+..++...+.++..+..
T Consensus 86 ~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~ 165 (569)
T PRK10789 86 FYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERF 165 (569)
T ss_pred HHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9976 467999999999999875555544444444333322223333468999999888888887777777888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001511 277 SKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIE 356 (1064)
Q Consensus 277 ~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~ 356 (1064)
.+.++..+++.....+...++++||.|+.|+.+.+++.+..++..+...+.. +..+....+..........++++
T Consensus 166 ~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~-- 240 (569)
T PRK10789 166 KLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVA---RIDARFDPTIYIAIGMANLLAIG-- 240 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--
Confidence 7777777888888888888999999999999998777777666555443322 22222222222111111122222
Q ss_pred hhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCC
Q 001511 357 PFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGS 435 (1064)
Q Consensus 357 ~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~ 435 (1064)
+++.+. .+..|+|. +++++.+ ...++.|+..+......++++..+.+|+.++++.+++......
T Consensus 241 --~g~~lv~~g~lt~g~--l~a~~~~----~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~------- 305 (569)
T PRK10789 241 --GGSWMVVNGSLTLGQ--LTSFVMY----LGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE------- 305 (569)
T ss_pred --HHHHHHHcCCcCHHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC-------
Confidence 222221 23446653 3443333 3445577778888888999999999999999876543221100
Q ss_pred CCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------
Q 001511 436 RNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------ 508 (1064)
Q Consensus 436 ~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------ 508 (1064)
......+.|+++||+|.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.+
T Consensus 306 -~~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~ 384 (569)
T PRK10789 306 -PVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQL 384 (569)
T ss_pred -CCCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCH
Confidence 001123469999999999754 579999999999999999999999999999999999999999999999975
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHH
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQ 585 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQ 585 (1064)
.++|++++||||+|++|++|++|||.++.+. .+++++.++++.+++++++.++|++.++ +.|.+|||||||
T Consensus 385 ~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~------~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~q 458 (569)
T PRK10789 385 DSWRSRLAVVSQTPFLFSDTVANNIALGRPD------ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ 458 (569)
T ss_pred HHHHhheEEEccCCeeccccHHHHHhcCCCC------CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 3568899999999999999999999987432 4678899999999999999999986554 367899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|++|||||+++|+++|||||||+||+++++.+.+.+++ .|+|+|+||||++.++.+|+|++|+++
T Consensus 459 Ri~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G 525 (569)
T PRK10789 459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHG 525 (569)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCC
Confidence 99999999999999999999999999999999998876 489999999999999999999999864
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-59 Score=531.70 Aligned_cols=536 Identities=19% Similarity=0.215 Sum_probs=359.0
Q ss_pred hHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcChhHHHHHHHHHHHHHHHHHHHHHH
Q 001511 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAF-LRRVPLFFQLISENILLCFLLSTMHST 163 (1064)
Q Consensus 85 ~~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~ 163 (1064)
+..++.+..+.+|.-.+.....++..+++++.+-++.+..|.+.+..++.+- .++.|..+......++..+++.+..++
T Consensus 10 ~~~~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~ 89 (591)
T KOG0057|consen 10 LKILRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSV 89 (591)
T ss_pred hHHHHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHH
Confidence 5667777777777544333334556666666667777788888888887764 233342221111111112222233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRL 242 (1064)
Q Consensus 164 ~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l 242 (1064)
++.+...+....-+...++...+.|++...++.++|.++ +|++...+..-...+...+..++..++..++...+....+
T Consensus 90 F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l 169 (591)
T KOG0057|consen 90 FNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGIL 169 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555777788888999999999998665 5566666665555555555555555544443322221122
Q ss_pred HHHhhhhHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 001511 243 CSYASPKYVFWILAYVLGAG---TMMRNFSPAFGKLMSKEQQLEGE-YRQLHSRLRTHAESIAFYGGENKEESHIQQKFK 318 (1064)
Q Consensus 243 ~~~~~~~L~li~l~~~~l~~---~i~~~~~~~~~k~~~~~q~~~~~-~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~ 318 (1064)
..-..+.++++++..+...+ +.+....-++++.. .+.+.+ -+...+. ..|-|+||.||.|++|.+++.....
T Consensus 170 ~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~---N~Adn~as~~~~ds-L~Nye~VKsfNnE~~Ea~~y~~~l~ 245 (591)
T KOG0057|consen 170 YYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAM---NNADNSASRRAYDS-LINYEIVKSFNNEEYEASRYDGSLK 245 (591)
T ss_pred HHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHH---HhhhhHHHHHHHHH-HhhHHHHHHcccHHHHHHHHHHHHH
Confidence 22235555555543322211 11111222333322 222222 2333444 4488999999999999876666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 319 ALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSI 398 (1064)
Q Consensus 319 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~ 398 (1064)
+..+...+........++.|..+..+... ...++. ..| +..+.+|.|...++. +.+.++-.++..++.
T Consensus 246 ~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~-~im~l~----~~g-i~~~~mtvgdlv~~n------~l~~qL~~~l~~Lg~ 313 (591)
T KOG0057|consen 246 TYERAGLKYSSSLAFLNFGQKAIFSVALT-FIMVLG----SNG-IAAGKMTVGDLVMVN------SLLFQLSLPLNFLGS 313 (591)
T ss_pred HHHHhhhhHHhHHHHHHHHHHHHHHHHHH-HHHHHH----hhh-hhhccccccchhhHH------HHHHHHHhHHHHHHH
Confidence 55544333333333344444443322111 111111 112 334456777644333 234455567777887
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEc
Q 001511 399 SSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITG 478 (1064)
Q Consensus 399 ~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG 478 (1064)
.+.++.+...-..-++...+...+.. ..+ .+.....+.|+|+||+|+|++++++|+++||+|++||.+||||
T Consensus 314 vyr~~~q~l~Dm~~~~~l~~~~~~i~--~~~------~~i~~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG 385 (591)
T KOG0057|consen 314 VYRELRQALTDMRTLFILLEVDEDIQ--EAA------LPIELFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVG 385 (591)
T ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhh--hcc------CCcccCCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEEC
Confidence 77777766544433333222211111 100 0112234579999999999888889999999999999999999
Q ss_pred CCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHH
Q 001511 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 552 (1064)
Q Consensus 479 ~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~ 552 (1064)
+|||||||++|+|.++++ ++|+|++||++ +++|+.|||||||..+|++||.+||.||... .+++++.
T Consensus 386 ~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~s------as~eeV~ 458 (591)
T KOG0057|consen 386 SNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPS------ASDEEVV 458 (591)
T ss_pred CCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCC------cCHHHHH
Confidence 999999999999999999 99999999987 4689999999999999999999999999765 6899999
Q ss_pred HHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcE
Q 001511 553 ELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTS 627 (1064)
Q Consensus 553 ~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~T 627 (1064)
++++++|++|.+.++|+++.+ ++|..|||||||||+||||+++||+|+++|||||+||.++|..+.+.+.+ .++|
T Consensus 459 e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rT 538 (591)
T KOG0057|consen 459 EACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRT 538 (591)
T ss_pred HHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCe
Confidence 999999999999999998766 47889999999999999999999999999999999999999999998876 4999
Q ss_pred EEEEccChhHHHhcCEEEEEeCCC
Q 001511 628 CITISHRPALVAFHDVVLSLDGEG 651 (1064)
Q Consensus 628 vI~ItH~l~~i~~~D~Il~l~~~g 651 (1064)
+|+|.||+.+++.+|+|++++++.
T Consensus 539 vI~IvH~l~ll~~~DkI~~l~nG~ 562 (591)
T KOG0057|consen 539 VIMIVHRLDLLKDFDKIIVLDNGT 562 (591)
T ss_pred EEEEEecchhHhcCCEEEEEECCe
Confidence 999999999999999999999863
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-58 Score=555.85 Aligned_cols=506 Identities=17% Similarity=0.204 Sum_probs=369.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-VPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHT 185 (1064)
Q Consensus 107 ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~ 185 (1064)
++..+++.++...+.+..|++.+.++|.+...+ ...+.. .+++.+++.++..+..++..++..+....+..++|.
T Consensus 8 ~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 83 (544)
T TIGR01842 8 FIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLM----LTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQ 83 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666777888999999998776332 222211 122222222333444555566666666668888899
Q ss_pred HHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 001511 186 RYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSE-LVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTM 264 (1064)
Q Consensus 186 ~~f~~~~~~~i~~~~~~~~n~~qRit~Di~~~~~~i~~-l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~l~~~i 264 (1064)
++|+++.+.|... .++...++++|++.+.+.+.. .+..++..++.. ++. .++++++|.+++++++..|+..++
T Consensus 84 ~~~~~ll~~~~~~----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~-~~~-~~l~~~~~~l~li~l~~~~l~~~i 157 (544)
T TIGR01842 84 PIFAASFSATLRR----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMP-IYL-LVCFLLHPWIGILALGGAVVLVGL 157 (544)
T ss_pred HHHHHHhcCcccC----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHH-HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999743 245578999999998776554 333333333322 222 345678999998887766666555
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 265 MRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKY 344 (1064)
Q Consensus 265 ~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1064)
...+.+..++...+.++..+++.....+..+++++||.|+.|+.+.+++++..++..+...+..+..........++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 235 (544)
T TIGR01842 158 ALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR-- 235 (544)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 555666666666777777777788888888999999999999999888888777766554433222221111111111
Q ss_pred HHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhc
Q 001511 345 LGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISREL 423 (1064)
Q Consensus 345 ~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~ 423 (1064)
.....++++ +++.+. .+..++|. +++++. +...++.|+..+......++++..+.+|+.++++.+++.
T Consensus 236 -~~~~~~~~~----~g~~l~~~g~it~g~--l~a~~~----~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 304 (544)
T TIGR01842 236 -IVLQSLVLG----LGAYLAIDGEITPGM--MIAGSI----LVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSR 304 (544)
T ss_pred -HHHHHHHHH----HHHHHHHcCCCCHHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 111111222 222221 33456653 344332 334566788888889999999999999999998765432
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEE
Q 001511 424 SIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502 (1064)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I 502 (1064)
.. ... .....+.++++||+|.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|
T Consensus 305 ~~-~~~--------~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 375 (544)
T TIGR01842 305 DP-AMP--------LPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV 375 (544)
T ss_pred cC-CCC--------CCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 11 000 01123469999999999754 689999999999999999999999999999999999999999999
Q ss_pred EeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---
Q 001511 503 AKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI--- 573 (1064)
Q Consensus 503 ~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~--- 573 (1064)
.+||.+ .++|+.++||||+|++|++|++||+.++.+ ..+++++.++++.++++++++++|++.++
T Consensus 376 ~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~ 449 (544)
T TIGR01842 376 RLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGE------NADPEKIIEAAKLAGVHELILRLPDGYDTVIG 449 (544)
T ss_pred EECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCC------CCCHHHHHHHHHHhChHHHHHhCccccccccC
Confidence 999965 346789999999999999999999986532 24678899999999999999999975444
Q ss_pred CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 574 ~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
++|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++ .|+|+|+||||++.+..+|+|++|+++
T Consensus 450 ~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G 529 (544)
T TIGR01842 450 PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDG 529 (544)
T ss_pred CCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 36889999999999999999999999999999999999999999998865 379999999999999999999999874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=552.23 Aligned_cols=521 Identities=12% Similarity=0.079 Sum_probs=362.0
Q ss_pred HHHHHHHHh-hchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 88 LQVLAAILL-SEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKY 166 (1064)
Q Consensus 88 l~rL~~~~~-p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~y 166 (1064)
.++++++++ |+++. ++..+++.++.+.+...++.+.+.+++.....+ . ..+...+++. ++..+..|
T Consensus 5 ~~~l~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~---~~~~~~~~~~----~~~~~~~~ 71 (555)
T TIGR01194 5 IGEILALLRSPFPAI-----TAFSIALGLAGGLAIIALLASINNAIHEENFLG-Q---GSLFSFGGLC----LLALLFRI 71 (555)
T ss_pred HHHHHHHHhhccHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-c---hHHHHHHHHH----HHHHHHHH
Confidence 467777888 88763 444555555556666667776666654321010 0 0111111111 12223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC-CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1064)
Q Consensus 167 l~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~-~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~ 245 (1064)
+..++..+...++..++|.++|+|+.+.|+++|++ +.++..+|+++|++.+.+.+.. +...+..++.. +.+.+++++
T Consensus 72 ~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~-~~~~~~l~~ 149 (555)
T TIGR01194 72 GADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIF-FFCIAYLAY 149 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHH
Confidence 44445555555588889999999999999999976 4779999999999998876654 33444333322 233455677
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHH
Q 001511 246 ASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGEN--KEESHIQQKFKALTRH 323 (1064)
Q Consensus 246 ~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~--~e~~~l~~~f~~l~~~ 323 (1064)
++|.+++++++.+|+..++..++.++..+...+.++..+++.....+...+++++|.|+.++ .+. +++++..+.
T Consensus 150 ~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~----~~~~~~~~~ 225 (555)
T TIGR01194 150 LSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAH----GAIQESANN 225 (555)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHH----HHhhHHHHH
Confidence 89999999887777766666666667777777777777888888888888999999999854 333 334333333
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 324 MRVV-LHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402 (1064)
Q Consensus 324 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~ 402 (1064)
.++. .+.........++...+.....+++++ +++.. +..++| .+++++. +...++.|+..+......
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~t~g--~l~a~~~----~~~~l~~pi~~l~~~~~~ 293 (555)
T TIGR01194 226 IADLHIIEILIFIAAENFGQLLFFLLIGCALF----AAAMF--ASIDAA--AISAFVL----ALLYIKGPLEMLVSALPI 293 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHh--cCCCHH--HHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 2222 111122222222211111111111222 22211 234555 3444433 334556888889999999
Q ss_pred HHHHHHHHHHHHHHHhhchhcccCCCCCCCCCC--CCCCCCCCcEEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEE
Q 001511 403 LNRLSGYADRIHELMVISRELSIEDKSPQRNGS--RNYFSEANYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLI 476 (1064)
Q Consensus 403 l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaI 476 (1064)
++++..+++|+.++++.+.+............. .......+.|+++||+|.|++. +++|+|+||++++||+++|
T Consensus 294 ~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~ai 373 (555)
T TIGR01194 294 LAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFI 373 (555)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEE
Confidence 999999999999997642211000000000000 0000123569999999999753 3699999999999999999
Q ss_pred EcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHH
Q 001511 477 TGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGG 550 (1064)
Q Consensus 477 vG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~ 550 (1064)
+||||||||||+++|+|+++|++|+|.+||.+ .++|+.+++|+|+|++|++|+++|+. +..++++
T Consensus 374 vG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~---------~~~~~~~ 444 (555)
T TIGR01194 374 VGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEG---------EHASLDN 444 (555)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccc---------cchhHHH
Confidence 99999999999999999999999999999965 35678999999999999999999941 1246778
Q ss_pred HHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-H---hcCc
Q 001511 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-R---AMGT 626 (1064)
Q Consensus 551 i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l-~---~~g~ 626 (1064)
+.++++.++++++++++|.++++. .+||||||||++||||++++|+++|||||||+||+++++.+.+.+ + ..|+
T Consensus 445 ~~~~~~~~~l~~~~~~lp~g~~t~--~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~ 522 (555)
T TIGR01194 445 AQQYLQRLEIADKVKIEDGGFSTT--TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGK 522 (555)
T ss_pred HHHHHHHcCCchhhcccccccCCc--ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999866553 689999999999999999999999999999999999999987744 2 3589
Q ss_pred EEEEEccChhHHHhcCEEEEEeCC
Q 001511 627 SCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 627 TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|+|+||||++++..||+|++|+++
T Consensus 523 tiiiisH~~~~~~~~d~i~~l~~G 546 (555)
T TIGR01194 523 TIIIISHDDQYFELADQIIKLAAG 546 (555)
T ss_pred EEEEEeccHHHHHhCCEEEEEECC
Confidence 999999999999999999999875
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-57 Score=598.02 Aligned_cols=449 Identities=16% Similarity=0.184 Sum_probs=326.3
Q ss_pred HHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 001511 177 KIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWIL 255 (1064)
Q Consensus 177 ~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l 255 (1064)
....+++|.+.|+++++.|++||+.. .|+..+|+++|++.+...+...+..++..++..+ ...+++++.+|.++++++
T Consensus 1034 ~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i-~~li~~~~~~~~~~~~~~ 1112 (1522)
T TIGR00957 1034 IQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVI-GALIVILLATPIAAVIIP 1112 (1522)
T ss_pred HHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33777889999999999999999875 6799999999999988777766666555544332 223334555665555444
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 256 AYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFG 335 (1064)
Q Consensus 256 ~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~ 335 (1064)
+.+++..++.+++.+..++..+..++..+.+.....+...++++||+|+.++.+.++..+..+...+..........|.+
T Consensus 1113 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 1192 (1522)
T TIGR00957 1113 PLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLA 1192 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43343333444444444444444444555566667777889999999999988765555544444333222222233333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 336 MIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHE 415 (1064)
Q Consensus 336 ~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~e 415 (1064)
....++. ..+.+++.....+. .+..+.|. +...+.| ...+..++..+...+..++....+.+|+.+
T Consensus 1193 ~~~~~~~----~~~~~~~~~~~v~~----~~~~~~g~--l~~~l~~----~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~ 1258 (1522)
T TIGR00957 1193 VRLECVG----NCIVLFAALFAVIS----RHSLSAGL--VGLSVSY----SLQVTFYLNWLVRMSSEMETNIVAVERLKE 1258 (1522)
T ss_pred HHHHHHH----HHHHHHHHHHHHHh----cCCCCHHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222211 11111111000011 12234443 2233322 344556777788888899999999999999
Q ss_pred HHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhccc
Q 001511 416 LMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL 494 (1064)
Q Consensus 416 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl 494 (1064)
+++.++|........ ......+..+.|+|+||+++|+++ +++|+|+||+|++||++||||+||||||||+++|.|+
T Consensus 1259 ~~~~~~e~~~~~~~~---~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl 1335 (1522)
T TIGR00957 1259 YSETEKEAPWQIQET---APPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRI 1335 (1522)
T ss_pred HhcCCCCccccccCC---CCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 997665432100000 000112235689999999999754 5799999999999999999999999999999999999
Q ss_pred CCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCC
Q 001511 495 WPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 568 (1064)
Q Consensus 495 ~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p 568 (1064)
++|++|+|.+||+| .++|++|++|||||++|+|||||||.... +.+++++.++++.++++++++++|
T Consensus 1336 ~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-------~~sdeei~~al~~a~l~~~I~~lp 1408 (1522)
T TIGR00957 1336 NESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-------QYSDEEVWWALELAHLKTFVSALP 1408 (1522)
T ss_pred ccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-------CCCHHHHHHHHHHcCcHHHHhhCc
Confidence 99999999999986 46899999999999999999999997321 257899999999999999999999
Q ss_pred CCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCE
Q 001511 569 PEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDV 643 (1064)
Q Consensus 569 ~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~ 643 (1064)
.+.++ +.|.+||||||||++|||||+++|+|||||||||+||.++++.+++.+++ .++|+|+||||++++..+|+
T Consensus 1409 ~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~Dr 1488 (1522)
T TIGR00957 1409 DKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTR 1488 (1522)
T ss_pred cCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCE
Confidence 76554 36789999999999999999999999999999999999999999999976 48999999999999999999
Q ss_pred EEEEeCC
Q 001511 644 VLSLDGE 650 (1064)
Q Consensus 644 Il~l~~~ 650 (1064)
|++|++|
T Consensus 1489 IlVld~G 1495 (1522)
T TIGR00957 1489 VIVLDKG 1495 (1522)
T ss_pred EEEEECC
Confidence 9999964
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-57 Score=593.70 Aligned_cols=460 Identities=18% Similarity=0.214 Sum_probs=312.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 167 ITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSY 245 (1064)
Q Consensus 167 l~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~ 245 (1064)
+...+......+..+++|.++|+++++.|++||+++ .|+..+|+++|++.+...+...+..++..++..+. +.+++.+
T Consensus 972 ~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~-~~i~i~~ 1050 (1622)
T PLN03130 972 LNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLS-TFVLIGI 1050 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 333333333344778889999999999999999875 67999999999999887776666665555544322 2223333
Q ss_pred hhhhHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001511 246 ASPKYVFWILAYVLGAGTMM-RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1064)
Q Consensus 246 ~~~~L~li~l~~~~l~~~i~-~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1064)
++| +.+++++.+++..+.. .++.+..++..+......+.......+..+++++||+|+.+++..+...+..+...+..
T Consensus 1051 ~~~-~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~ 1129 (1622)
T PLN03130 1051 VST-ISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFT 1129 (1622)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 454 3333322222222222 22223333333333333344445567777899999999997765433333332222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCC---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPD---TSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSR 401 (1064)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~---~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~ 401 (1064)
........|.+....++..++....+.+.+ +.++..... .+++| .+++ +...+...+..+.....
T Consensus 1130 ~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v---~~~~~~~~~~~~~~~~G--~~ls-------~~~~~~~~l~~l~~~~~ 1197 (1622)
T PLN03130 1130 LVNMSSNRWLAIRLETLGGLMIWLTASFAV---MQNGRAENQAAFASTMG--LLLS-------YALNITSLLTAVLRLAS 1197 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcccccccchhhhHHHH--HHHH-------HHHHHHHHHHHHHHHHH
Confidence 111111222222222111100000000000 011111000 11222 2222 12233344445555566
Q ss_pred HHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCC
Q 001511 402 RLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPN 480 (1064)
Q Consensus 402 ~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~s 480 (1064)
.++....+.+|+.++++.++|.+...... .+....+..+.|+|+||+|+|+++ +++|+|+||+|++||++||||+|
T Consensus 1198 ~~e~~~~sveRi~e~~~~~~E~~~~~~~~---~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrS 1274 (1622)
T PLN03130 1198 LAENSLNAVERVGTYIDLPSEAPLVIENN---RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRT 1274 (1622)
T ss_pred HHHHHHHHHHHHHHHhCCCCcccccccCC---CCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCC
Confidence 77888999999999988766532110000 000112235689999999999654 57999999999999999999999
Q ss_pred CCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHH
Q 001511 481 GSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVEL 554 (1064)
Q Consensus 481 GsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~ 554 (1064)
|||||||+++|.|+++|++|+|.+||+| .++|++|++|||||.+|+|||+|||.++. +.+++++.++
T Consensus 1275 GSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-------~~tdeei~~A 1347 (1622)
T PLN03130 1275 GAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-------EHNDADLWES 1347 (1622)
T ss_pred CCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-------CCCHHHHHHH
Confidence 9999999999999999999999999976 46899999999999999999999998753 2478999999
Q ss_pred HHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEE
Q 001511 555 LKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCI 629 (1064)
Q Consensus 555 l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI 629 (1064)
++.++++++++++|.+.++ +.|.+||||||||++|||||+++|+|||||||||+||.++++.|++.+++ .++|+|
T Consensus 1348 l~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI 1427 (1622)
T PLN03130 1348 LERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 1427 (1622)
T ss_pred HHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 9999999999999976554 35789999999999999999999999999999999999999999999986 489999
Q ss_pred EEccChhHHHhcCEEEEEeCC
Q 001511 630 TISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 630 ~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+||||++++..||+|+||++|
T Consensus 1428 ~IAHRL~tI~~~DrIlVLd~G 1448 (1622)
T PLN03130 1428 IIAHRLNTIIDCDRILVLDAG 1448 (1622)
T ss_pred EEeCChHHHHhCCEEEEEECC
Confidence 999999999999999999975
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-59 Score=520.36 Aligned_cols=534 Identities=18% Similarity=0.250 Sum_probs=363.6
Q ss_pred HHHHHHHHHHhhchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHH--HH
Q 001511 86 KSLQVLAAILLSEMGK-MGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTM--HS 162 (1064)
Q Consensus 86 ~~l~rL~~~~~p~~~~-~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~--~~ 162 (1064)
+.++...++++|.+.. .....+..++ +..+.-++.+.+|.+.+++.+.+.... ..-+..+...+++.++-... +.
T Consensus 196 rk~~~~~~ylwp~~~~alql~v~~cl~-ll~i~rli~~~~pi~~k~iv~~ltap~-~~~~~~~~~~v~L~flqg~gtgsG 273 (790)
T KOG0056|consen 196 RKLRTVAPYLWPTKSIALQLRVVFCLF-LLIIGRLINVSLPILSKWIVDELTAPD-TFQYSLVFLYVFLKFLQGGGTGSG 273 (790)
T ss_pred ceeEEeccccccCCCcchhHHHHHHHH-HHHHHHHHhhhhHHhHHHHHHhhcCcc-hhhHHHHHHHHHHHHHhcCCcccc
Confidence 3444555666664332 2222233333 334444788889999999998876221 11122222233322221111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC-CCCCh---hHHHHchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 163 TSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHP---EQRLASDVPRFCSELSELVQDDLTAVTDGLLY 238 (1064)
Q Consensus 163 ~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~-~~~n~---~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~ 238 (1064)
+.+-+...+.++..+.-++.+-...|+|+..+.+.++-+ +.|+. +.|=++-+. +.+.+..-+.+.+.-+..+++|
T Consensus 274 ~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vY 352 (790)
T KOG0056|consen 274 FLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVY 352 (790)
T ss_pred chhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhh
Confidence 344455556667777788888889999999999988744 45543 334444444 3333322223333222222222
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 001511 239 TWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFK 318 (1064)
Q Consensus 239 ~~~l~~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~ 318 (1064)
+....||...+++++...+...++..+...-.+..++......+.|.......-|.|++|-|++|+.|.++..+...
T Consensus 353 ---F~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil 429 (790)
T KOG0056|consen 353 ---FFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAIL 429 (790)
T ss_pred ---hhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHH
Confidence 11224666777666554444333333322222333333333333344344444588999999999999865555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 319 ALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLS 397 (1064)
Q Consensus 319 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~ 397 (1064)
+..+...+....-.+.+..++.+ +.+-+..+..+..+.. .+..|+|. ++- +..++.++++|+..++
T Consensus 430 ~Yqk~E~ks~~sLnfLN~~Qn~I-------i~lgll~gsll~aY~Vt~q~ltVGD--fVl----f~TYliqLy~PLN~FG 496 (790)
T KOG0056|consen 430 KYQKQEWKSLASLNFLNIVQNGI-------IGLGLLAGSLLCAYRVTEQTLTVGD--FVL----FLTYLIQLYMPLNFFG 496 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh-------hhhHHhhhhheeeeeeeeccccccc--eeh----HHHHHHHHhCchHHHH
Confidence 44333222221112222233322 1111111111222222 22345554 222 2345678889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEE
Q 001511 398 ISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLIT 477 (1064)
Q Consensus 398 ~~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIv 477 (1064)
..++.++....-.|++++++++++|+.+.+.. .+.....+.|+|+||+|.|.+++++|+||||++.||+.+|+|
T Consensus 497 T~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a------~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlV 570 (790)
T KOG0056|consen 497 TYYRSIQKNFIDMENMFDLLKEEPEVVDLPGA------PPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALV 570 (790)
T ss_pred HHHHHHHHhhhhHHHHHHHhhcCchhhcCCCC------CCccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEE
Confidence 99999999999999999999988876542211 112234678999999999999999999999999999999999
Q ss_pred cCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHH
Q 001511 478 GPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM 551 (1064)
Q Consensus 478 G~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i 551 (1064)
||||+||||++|+|.++++.++|.|.+||+| .++|++||.||||..+|++||..||.|+.+. +++|++
T Consensus 571 G~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~------Asneev 644 (790)
T KOG0056|consen 571 GPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPS------ASNEEV 644 (790)
T ss_pred CCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCC------CChHHH
Confidence 9999999999999999999999999999987 5789999999999999999999999998765 578999
Q ss_pred HHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--Cc
Q 001511 552 VELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GT 626 (1064)
Q Consensus 552 ~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~ 626 (1064)
.++++.++++|.+-.+|+++.+ ++|-.|||||||||||||+++++|.|++|||+|||||..+|+.|+..+.+. ++
T Consensus 645 yaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~R 724 (790)
T KOG0056|consen 645 YAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANR 724 (790)
T ss_pred HHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCC
Confidence 9999999999999999998765 468899999999999999999999999999999999999999999999874 99
Q ss_pred EEEEEccChhHHHhcCEEEEEeCC
Q 001511 627 SCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 627 TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|.|+|+||++++-+||.|++++++
T Consensus 725 TtIVvAHRLSTivnAD~ILvi~~G 748 (790)
T KOG0056|consen 725 TTIVVAHRLSTIVNADLILVISNG 748 (790)
T ss_pred ceEEEeeeehheecccEEEEEeCC
Confidence 999999999999999999999975
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-56 Score=587.76 Aligned_cols=454 Identities=17% Similarity=0.209 Sum_probs=324.3
Q ss_pred HHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001511 179 VTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAY 257 (1064)
Q Consensus 179 L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~ 257 (1064)
..+++|.+.|+++++.|++||++. .++..+|+++|++.+...+...+..++..++..+. +.+++++.+|.+.++++.+
T Consensus 1029 ~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~-~li~~~~~~p~~~~~~i~~ 1107 (1560)
T PTZ00243 1029 GSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICS-SILVTSASQPFVLVALVPC 1107 (1560)
T ss_pred HHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999875 67999999999999887776655555544443322 2334455566333322221
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 258 VLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMI 337 (1064)
Q Consensus 258 ~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~ 337 (1064)
..+...+..++.+..++..+......+.+.....+...++++|++|+.++.+.+++.+..++..+..........|.+..
T Consensus 1108 ~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~ 1187 (1560)
T PTZ00243 1108 GYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVR 1187 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222223333344444444444455556677788888999999999999998777777776665444333344444444
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 338 QDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELM 417 (1064)
Q Consensus 338 ~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell 417 (1064)
..++..+...+++++.+.. .+.+ .+..+.|.. ... ..+...+..++..+...+..++....+.+|+.+++
T Consensus 1188 ~~~l~~~~~~~~~~~~~~~-~~~~---~~~~~~g~l--~~~----l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~ 1257 (1560)
T PTZ00243 1188 VEFLSNIVVTVIALIGVIG-TMLR---ATSQEIGLV--SLS----LTMAMQTTATLNWLVRQVATVEADMNSVERLLYYT 1257 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhc---cCCCCHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433222111111111110 0101 112234421 111 22234455677777888888999999999999998
Q ss_pred hhchhcccCC--C-------------C------CCCCCC---CCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCC
Q 001511 418 VISRELSIED--K-------------S------PQRNGS---RNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGS 472 (1064)
Q Consensus 418 ~~~~~~~~~~--~-------------~------~~~~~~---~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge 472 (1064)
+..++...+. . . ...... .+..+..+.|+|+||+|+|+++ +++|+||||+|++||
T Consensus 1258 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~Ge 1337 (1560)
T PTZ00243 1258 DEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPRE 1337 (1560)
T ss_pred hcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCC
Confidence 6433211000 0 0 000000 0011124679999999999765 459999999999999
Q ss_pred EEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCC
Q 001511 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 546 (1064)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~ 546 (1064)
++||||+||||||||+++|+|+++|++|+|.+||+| .++|++|++|||||++|++||+|||.... ..
T Consensus 1338 kVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~-------~~ 1410 (1560)
T PTZ00243 1338 KVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL-------EA 1410 (1560)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc-------CC
Confidence 999999999999999999999999999999999976 46899999999999999999999996431 25
Q ss_pred CHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001511 547 THGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHK-PKFAILDECTSAVTTDMEERFCAKVR 622 (1064)
Q Consensus 547 ~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~-P~iliLDEPTSaLD~~~~~~l~~~l~ 622 (1064)
++++++++++.+++++++.++|.+.++ +.|.+||||||||++|||||+++ |+|||||||||+||+++++.+++.++
T Consensus 1411 sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~ 1490 (1560)
T PTZ00243 1411 SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVM 1490 (1560)
T ss_pred CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 789999999999999999999986554 36789999999999999999996 89999999999999999999999987
Q ss_pred h--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 623 A--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 623 ~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+ .++|+|+||||++++..+|+|++|+++
T Consensus 1491 ~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G 1520 (1560)
T PTZ00243 1491 SAFSAYTVITIAHRLHTVAQYDKIIVMDHG 1520 (1560)
T ss_pred HHCCCCEEEEEeccHHHHHhCCEEEEEECC
Confidence 6 389999999999999999999999974
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-56 Score=585.58 Aligned_cols=456 Identities=17% Similarity=0.217 Sum_probs=312.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 001511 173 LQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYV 251 (1064)
Q Consensus 173 ~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~ 251 (1064)
.....+..+++|.++++++.+.|++||++. .++..+|+++|++.+...+...+..++..++..+. +.+++.++++ +.
T Consensus 975 ~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~-~~i~~~~~~~-~~ 1052 (1495)
T PLN03232 975 ISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLS-TFALIGTVST-IS 1052 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HH
Confidence 333344778889999999999999999875 67999999999999887776665555544433222 1222233333 22
Q ss_pred HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 252 FWILAYVLGAGTMMRNFS-PAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHD 330 (1064)
Q Consensus 252 li~l~~~~l~~~i~~~~~-~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~ 330 (1064)
+++++.+++..++...+. +..++..+......+.+.....+...++++||+|+.+++..+...+..+...+........
T Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1132 (1495)
T PLN03232 1053 LWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSS 1132 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222222222 2222233333334444555667777899999999998766543333322222111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-cccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 331 HWWFGMIQDFLLKYLGATVAVILIIEPFF-AGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGY 409 (1064)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~il~~~~~~-~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~ 409 (1064)
..|.+....+ ++..+.++......+ .+.. + ...+....+. .+..+...+.+++..+...+..++....+
T Consensus 1133 ~~wl~~~~~~----~~~~~~~~~~~~~v~~~~~~--~-~~~~~~~~~g---~~~~~~~~~~~~l~~l~~~~~~~~~~~~s 1202 (1495)
T PLN03232 1133 NRWLTIRLET----LGGVMIWLTATFAVLRNGNA--E-NQAGFASTMG---LLLSYTLNITTLLSGVLRQASKAENSLNS 1202 (1495)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHccccc--c-ccccchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222221111 111111110000001 1111 0 0011111111 12233445556777777788889999999
Q ss_pred HHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHH
Q 001511 410 ADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLF 488 (1064)
Q Consensus 410 ~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl 488 (1064)
.+|+.++++.++|........ .+....+..+.|+|+||+|+|+++ +++|+|+||+|++||++|||||||||||||+
T Consensus 1203 ~eRi~e~~~~~~e~~~~~~~~---~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~ 1279 (1495)
T PLN03232 1203 VERVGNYIDLPSEATAIIENN---RPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSML 1279 (1495)
T ss_pred HHHHHHHhcCCccccccccCC---CCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHH
Confidence 999999998766532110000 000111234679999999999654 6799999999999999999999999999999
Q ss_pred HHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChh
Q 001511 489 RVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 562 (1064)
Q Consensus 489 ~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~ 562 (1064)
++|+|+++|++|+|.+||+| .++|++|++|||||++|++||+|||.++. +.+++++.++++.+++++
T Consensus 1280 ~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-------~~sdeei~~al~~a~l~~ 1352 (1495)
T PLN03232 1280 NALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-------EHNDADLWEALERAHIKD 1352 (1495)
T ss_pred HHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-------CCCHHHHHHHHHHcCCHH
Confidence 99999999999999999976 46899999999999999999999998753 257899999999999999
Q ss_pred HHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhH
Q 001511 563 LLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPAL 637 (1064)
Q Consensus 563 ~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~ 637 (1064)
+++++|.+.++ +.|.+||||||||++|||||+++|+|||||||||+||+++++.+++.+++. ++|+|+||||+++
T Consensus 1353 ~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~t 1432 (1495)
T PLN03232 1353 VIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNT 1432 (1495)
T ss_pred HHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence 99999976554 367899999999999999999999999999999999999999999998863 8999999999999
Q ss_pred HHhcCEEEEEeCC
Q 001511 638 VAFHDVVLSLDGE 650 (1064)
Q Consensus 638 i~~~D~Il~l~~~ 650 (1064)
+..+|+|++|++|
T Consensus 1433 i~~~DrIlVL~~G 1445 (1495)
T PLN03232 1433 IIDCDKILVLSSG 1445 (1495)
T ss_pred HHhCCEEEEEECC
Confidence 9999999999974
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-60 Score=537.65 Aligned_cols=311 Identities=25% Similarity=0.395 Sum_probs=294.1
Q ss_pred CCCchhhhhccccccCCceeecCCCeeehhHHHHHHhhHHHHHHhhc-CCceehhHhhcCHHHHHHHHHHHHHHhhhHHH
Q 001511 735 PRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASL-NGTTVKYVLEQDKASFVRLIGVSVLQSAASSF 813 (1064)
Q Consensus 735 ~~~~p~Ra~~lCri~iP~l~s~e~g~lv~c~~~lv~Rt~ls~~va~l-~g~~v~~iv~~~~~~F~~~l~~~~~~~~pas~ 813 (1064)
+..++.+..++.++..|+..+++...+++..+.+++||....|+... .|.+-.+++.+|.+.|.+.+.+.++..+..+.
T Consensus 58 ~~~f~~k~~~ilkil~p~~~~~~~~~l~l~~~~l~~~~~~~~y~~~~~~~~~y~al~~kd~~~F~~~~~~~~~~~~~~s~ 137 (659)
T KOG0060|consen 58 DKVFFQKFLQILKILFPSTFSSQTALLLLALVALTLLTTADVYMIGNIPTKFYVALINKDAELFKRLLFKYVLLIPGISL 137 (659)
T ss_pred hHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHhHhheecccchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455689999999999999999999999999999999999998887 66666999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHH
Q 001511 814 IAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFT 893 (1064)
Q Consensus 814 ~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~~~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~ 893 (1064)
+|+..||..+.|+|+||.|||+|+|++||++++|||++|+|+||+|||||||+||+|||+.+++||+|++||.+|+++|+
T Consensus 138 ~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~ 217 (659)
T KOG0060|consen 138 LNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYT 217 (659)
T ss_pred HHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCchhHHHHHHHHHHHHHHHhcCCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHH
Q 001511 894 WRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRE 973 (1064)
Q Consensus 894 ~~l~~~~g~~g~~~~~~~~~~~~~~lr~~~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~ 973 (1064)
|+|.++.|+.||..+++|+++++.+.|.+.+|+|+++++||++||||||.|+|+++||||||||+|+++|+..+++.|++
T Consensus 218 ~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~ 297 (659)
T KOG0060|consen 218 FRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRN 297 (659)
T ss_pred hHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHHHHHHHhhhcCCccccchhHHHHHHHhHHHHHHhhhhcccc
Q 001511 974 LLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGEIRMIMNLIHCLDSHLSSITH 1047 (1064)
Q Consensus 974 l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1064)
|++|+++++.+|||.+++||++- |++++|+|++++.|+|... -..++|+.+..+-+.+|--.|...+++++-
T Consensus 298 Lv~~l~~l~~~r~~l~f~~n~~~-Ylg~ilsy~vi~~p~Fs~h-~y~~~s~aEL~~~i~~na~~~i~Li~~f~~ 369 (659)
T KOG0060|consen 298 LVQHLRELMSFRFWLGFIDNIFD-YLGGILSYVVIAIPFFSGH-VYDDLSPAELSGLISNNAFVFIYLISAFGR 369 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhhheeeEEeeeeeccc-ccCCcCHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999999999999997 9999999999999999832 456888999888888888888877777653
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-55 Score=528.33 Aligned_cols=509 Identities=16% Similarity=0.163 Sum_probs=344.1
Q ss_pred HHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 91 LAAILLSEMGKMGARDLLALVGIVVLRTALSNRL-AKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITG 169 (1064)
Q Consensus 91 L~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l-~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~ 169 (1064)
++++++++++. ++..+++.++.+.+.+.. +.+.++++|.+.. .... +..+++++++..++..+..|+..
T Consensus 4 ~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 73 (547)
T PRK10522 4 LRLVWRQYRWP-----FISVMALSLASAALGIGLIAFINQRLIETADT-SLLV----LPEFLGLLLLLMAVTLGSQLALT 73 (547)
T ss_pred HHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cchH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666653 444555555555565553 5666777775432 1111 11111111111222334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001511 170 TLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASP 248 (1064)
Q Consensus 170 ~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~ 248 (1064)
.++ .++..++|.++|+++...|+++|++. .++..+|+++|++.+...+.. +..++..++..++ ...++++++|
T Consensus 74 ~~~----~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~-l~~~~~~~~~~i~-~~~~l~~~~~ 147 (547)
T PRK10522 74 TLG----HHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVR-LPELVQGIILTLG-SAAYLAWLSP 147 (547)
T ss_pred HHH----HHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHhH
Confidence 444 44778899999999999999999764 779999999999988765443 3333334333322 2345667899
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-
Q 001511 249 KYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVV- 327 (1064)
Q Consensus 249 ~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~- 327 (1064)
.+++++++.+|+..++..++.++..+...+.++..+++.....+..+++++++ ++.+..+ +.+.+++++..+..++.
T Consensus 148 ~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~-~~~~~~~~~~~~~~~~~~ 225 (547)
T PRK10522 148 KMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAE-YVFENEYEPDAQEYRHHI 225 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHH-HHHHHHHhHHHHHHHhhh
Confidence 99999888888777777778888888777777788888888888888888885 4443321 12334444444333221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 328 LHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLS 407 (1064)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~ 407 (1064)
.+..........+........+++++ ++++... ..+.+.+.+++. .+..+..|+..+......++.+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~------~~~~~~~pl~~l~~~~~~~~~~~ 293 (547)
T PRK10522 226 IRADTFHLSAVNWSNIMMLGAIGLVF----YMANSLG--WADTNVAATYSL------TLLFLRTPLLSAVGALPTLLSAQ 293 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhh--cCChHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222211111111111111111 1222211 112222222211 12224467888888888999999
Q ss_pred HHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHH
Q 001511 408 GYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSL 487 (1064)
Q Consensus 408 ~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTL 487 (1064)
.+.+|+.++++.+++.+.+. . . . .+..+.++++||+|.|++++++|+|+||+|++||+++|+||||||||||
T Consensus 294 ~a~~ri~~l~~~~~~~~~~~-~--~----~-~~~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL 365 (547)
T PRK10522 294 VAFNKLNKLALAPYKAEFPR-P--Q----A-FPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTL 365 (547)
T ss_pred HHHHHHHHHhcccccccccc-c--c----c-cCcCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHH
Confidence 99999999875433211000 0 0 0 0112469999999999866789999999999999999999999999999
Q ss_pred HHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh
Q 001511 488 FRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 561 (1064)
Q Consensus 488 l~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~ 561 (1064)
+++|+|+++|++|+|.+||.+ .++|++++||||+|++|++|+++| + . ..+++++.++++.+++.
T Consensus 366 ~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~------~~~~~~~~~~~~~~~l~ 435 (547)
T PRK10522 366 AMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-K------PANPALVEKWLERLKMA 435 (547)
T ss_pred HHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-C------chHHHHHHHHHHHcCCc
Confidence 999999999999999999975 257889999999999999999998 1 1 24567888899999988
Q ss_pred hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhH
Q 001511 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPAL 637 (1064)
Q Consensus 562 ~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~ 637 (1064)
+..+. +.+. ..|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.+ .++|+|+||||++.
T Consensus 436 ~~~~~-~~~~--~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~ 512 (547)
T PRK10522 436 HKLEL-EDGR--ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY 512 (547)
T ss_pred hhhhc-cccC--CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH
Confidence 76543 2211 13678999999999999999999999999999999999999998877642 48999999999999
Q ss_pred HHhcCEEEEEeCC
Q 001511 638 VAFHDVVLSLDGE 650 (1064)
Q Consensus 638 i~~~D~Il~l~~~ 650 (1064)
++.+|+|++++++
T Consensus 513 ~~~~d~i~~l~~G 525 (547)
T PRK10522 513 FIHADRLLEMRNG 525 (547)
T ss_pred HHhCCEEEEEECC
Confidence 9999999999875
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-52 Score=548.02 Aligned_cols=496 Identities=15% Similarity=0.163 Sum_probs=332.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHH
Q 001511 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTS--KYI--TGTLSLQFRKIVTKL 182 (1064)
Q Consensus 107 ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~--~yl--~~~l~~~~r~~L~~~ 182 (1064)
++..+++.++.+++....|.+.+.+++.+.....+ ..... +.+++++..++..+. .|. ...++.+ +...
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~~-~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----ir~~ 375 (1495)
T PLN03232 303 FWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPA-WVGYV--YAFLIFFGVTFGVLCESQYFQNVGRVGFR----LRST 375 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-chHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 44445556677777778899999998876543321 11111 111111111222111 122 2334444 5556
Q ss_pred HHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--
Q 001511 183 IHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVL-- 259 (1064)
Q Consensus 183 l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~-- 259 (1064)
++...|++.+.++..++++. .++..+|+++|++++.+.. ..+..+...++..++..+.+ + +.+.+.+++.++
T Consensus 376 l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l--~--~~lg~~~l~~~~v~ 450 (1495)
T PLN03232 376 LVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLL--Y--QQLGVASLFGSLIL 450 (1495)
T ss_pred HHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--H--HHHhHHHHHHHHHH
Confidence 67788999999998877654 6789999999999987764 23333332222222211111 1 112221111111
Q ss_pred -HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 260 -GAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQ 338 (1064)
Q Consensus 260 -l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~ 338 (1064)
+...+...++++..+..++.++...+......+..+++++||+|+.|+.+.+++++..++..+..++. ....++..
T Consensus 451 ~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~---~~~~~~~~ 527 (1495)
T PLN03232 451 FLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKA---QLLSAFNS 527 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 11112334556666666666666666667788888999999999999998766655444433322221 12222111
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 339 DFLLKYLGATVAVILIIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELM 417 (1064)
Q Consensus 339 ~~~~~~~~~~~~~il~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell 417 (1064)
++...... ++.++. +++... .+..+.| .+++.+. ++..+..|+..+......+.++..+++|+.+++
T Consensus 528 -~~~~~~~~-~~~~~~----fg~~~v~~~~lt~g--~vf~~l~----l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L 595 (1495)
T PLN03232 528 -FILNSIPV-VVTLVS----FGVFVLLGGDLTPA--RAFTSLS----LFAVLRSPLNMLPNLLSQVVNANVSLQRIEELL 595 (1495)
T ss_pred -HHHHHHHH-HHHHHH----HHHHHHhCCCCCHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 111111 122211 2233444 3444332 344455677788888889999999999999999
Q ss_pred hhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCC--CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC
Q 001511 418 VISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1064)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~--~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1064)
+.+++..... . + .....+.|+++|++|.|++ ++++|+|+||+|++||.++|+||||||||||+++|+|++
T Consensus 596 ~~~~~~~~~~-~-~------~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~ 667 (1495)
T PLN03232 596 LSEERILAQN-P-P------LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL 667 (1495)
T ss_pred cCcccccccc-C-C------cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 7654321110 0 0 0011246999999999975 367999999999999999999999999999999999999
Q ss_pred CCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc--
Q 001511 496 PLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI-- 573 (1064)
Q Consensus 496 ~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~-- 573 (1064)
+|++|.+. .+|++|+||+|+|++|++||+|||.++.+ .++++..++++.+++.+.++.+|++.++
T Consensus 668 ~~~~G~i~------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-------~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~I 734 (1495)
T PLN03232 668 SHAETSSV------VIRGSVAYVPQVSWIFNATVRENILFGSD-------FESERYWRAIDVTALQHDLDLLPGRDLTEI 734 (1495)
T ss_pred cccCCCEE------EecCcEEEEcCccccccccHHHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhCCCCCCcee
Confidence 99998763 34668999999999999999999999853 3678899999999999999999986655
Q ss_pred -CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHh--cCcEEEEEccChhHHHhcCEEEEEeC
Q 001511 574 -NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAK-VRA--MGTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 574 -~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~-l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
+.|.+|||||||||+||||++++|+|+||||||||||+++++++.+. ++. .++|+|+|||+++.++.+|+|++|++
T Consensus 735 Ge~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~ 814 (1495)
T PLN03232 735 GERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSE 814 (1495)
T ss_pred cCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeC
Confidence 36889999999999999999999999999999999999999988764 443 58999999999999999999999986
Q ss_pred C
Q 001511 650 E 650 (1064)
Q Consensus 650 ~ 650 (1064)
+
T Consensus 815 G 815 (1495)
T PLN03232 815 G 815 (1495)
T ss_pred C
Confidence 4
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-52 Score=546.48 Aligned_cols=499 Identities=15% Similarity=0.140 Sum_probs=330.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 001511 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMH--STSKYITGTLSLQFRKIVTKLIH 184 (1064)
Q Consensus 107 ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~--~~~~yl~~~l~~~~r~~L~~~l~ 184 (1064)
++..+++.++..++....|.+.+.+++.+.....+ ....+. .+++ ++..++. ....|+.. ..++..++...++
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~-~~~~~~-~~~l-~~~~~~~~~~~~~~~~~--~~~~~~~ir~~L~ 377 (1622)
T PLN03130 303 FWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPA-WIGYIY-AFSI-FVGVVLGVLCEAQYFQN--VMRVGFRLRSTLV 377 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-hHHHHH-HHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 44455556666777778899999998877644321 111111 1111 1111111 11122222 1233333555667
Q ss_pred HHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHH
Q 001511 185 TRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWI-LAYVLGAG 262 (1064)
Q Consensus 185 ~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~-l~~~~l~~ 262 (1064)
..+|+|.++++...+++. .++..+++++|++++...... +..+...++..++..+.+. ...+++.++ ++++++..
T Consensus 378 ~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-l~~l~~~pl~ii~~~~lL~--~~lg~~~l~g~~v~~l~~ 454 (1622)
T PLN03130 378 AAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQ-LHTLWSAPFRIIIAMVLLY--QQLGVASLIGSLMLVLMF 454 (1622)
T ss_pred HHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 788999999998877653 578999999999998776532 3333323222222111111 111111111 11111122
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 263 TMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLL 342 (1064)
Q Consensus 263 ~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~ 342 (1064)
.+...+.++..+...+..+...+......+..+++++||+|+.|+...+++++..++..+..++ ......+ ..++.
T Consensus 455 ~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~---~~~~~~~-~~~~~ 530 (1622)
T PLN03130 455 PIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRK---AQLLSAF-NSFIL 530 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHH
Confidence 2233455566666655555555566677888899999999999998876655444332222221 1111111 11111
Q ss_pred HHHHHHHHHHHhhhhhhcccc-cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 001511 343 KYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISR 421 (1064)
Q Consensus 343 ~~~~~~~~~il~~~~~~~g~l-~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~ 421 (1064)
..... ++.++. +++.. ..+..+.| .+++.+. ++..+..|+..+......+.++..+++|+.++++.++
T Consensus 531 ~~~~~-~v~~~~----fg~~~~~~g~Lt~g--~vf~~l~----l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e 599 (1622)
T PLN03130 531 NSIPV-LVTVVS----FGVFTLLGGDLTPA--RAFTSLS----LFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEE 599 (1622)
T ss_pred HHHHH-HHHHHH----HHHHHHhCCCCCHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 11110 111111 11111 12334554 3334332 2344456777788888899999999999999987543
Q ss_pred hcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCC--CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCc
Q 001511 422 ELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS 499 (1064)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~--~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~ 499 (1064)
....+. . .. ....+.|+++|++|.|++ ++++|+|+||+|++||.++|+||||||||||+++|+|+++|++
T Consensus 600 ~~~~~~-~--~~-----~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~ 671 (1622)
T PLN03130 600 RVLLPN-P--PL-----EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRS 671 (1622)
T ss_pred cccccC-C--cc-----cCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCC
Confidence 221100 0 00 011246999999999975 3679999999999999999999999999999999999999999
Q ss_pred -cEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CC
Q 001511 500 -GHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NW 575 (1064)
Q Consensus 500 -G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~ 575 (1064)
|+|.+.| +|+||+|+|++|++||+|||.++.+ .++++..++++.+++.++++.+|++.++ +.
T Consensus 672 GG~I~l~~-------~Iayv~Q~p~LfngTIreNI~fg~~-------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~ 737 (1622)
T PLN03130 672 DASVVIRG-------TVAYVPQVSWIFNATVRDNILFGSP-------FDPERYERAIDVTALQHDLDLLPGGDLTEIGER 737 (1622)
T ss_pred CceEEEcC-------eEEEEcCccccCCCCHHHHHhCCCc-------ccHHHHHHHHHHhCcHHHHHhCCCcccccccCC
Confidence 9998654 7999999999999999999999854 3578899999999999999999986554 36
Q ss_pred CCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH-HHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA-KVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 576 g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~-~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|.+|||||||||+||||++++|+|+||||||||||+++++++.+ .++. .|+|+|+|||+++.+..+|+|++|+++
T Consensus 738 G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G 815 (1622)
T PLN03130 738 GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEG 815 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCC
Confidence 88999999999999999999999999999999999999998765 4443 489999999999999999999999864
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-53 Score=560.33 Aligned_cols=456 Identities=17% Similarity=0.209 Sum_probs=321.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001511 171 LSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPK 249 (1064)
Q Consensus 171 l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~ 249 (1064)
+..+...+..++++.+.|+++.+.|++||++. .++..+|+++|++.+...+...+..++..++..+.+ .+++.+++|.
T Consensus 948 ~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~-l~~i~~~~p~ 1026 (1490)
T TIGR01271 948 PLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGA-IFVVSVLQPY 1026 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 33333444778899999999999999999874 679999999999998887776666665555443332 2334456776
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 250 YVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLH 329 (1064)
Q Consensus 250 L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~ 329 (1064)
++++++.++++..++..++.+..+++.+......+.+.....+...++++||+|+.++.+.+++.+..+...........
T Consensus 1027 l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~ 1106 (1490)
T TIGR01271 1027 IFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLS 1106 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433332222222222333333333333333444455566777779999999999999887777776654443333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 330 DHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGY 409 (1064)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~ 409 (1064)
...|.+....++......++ .++. ++... .+.+++|.. +. + ...+..++..+...+..+.....+
T Consensus 1107 ~~~wl~~~~~~i~~~~~~~~-~~l~----~~~~~-~~~g~~g~~--l~---~----~~~l~~~l~~l~~~~~~le~~~~s 1171 (1490)
T TIGR01271 1107 TLRWFQMRIDIIFVFFFIAV-TFIA----IGTNQ-DGEGEVGII--LT---L----AMNILSTLQWAVNSSIDVDGLMRS 1171 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHH----HHHhc-CCccHHHHH--HH---H----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333332211111111 1111 11111 112223321 11 1 222334455555666788888999
Q ss_pred HHHHHHHHhhchhcccCCCCC-----------CCCCCCCCCCCCCcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEE
Q 001511 410 ADRIHELMVISRELSIEDKSP-----------QRNGSRNYFSEANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLIT 477 (1064)
Q Consensus 410 ~~Ri~ell~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIv 477 (1064)
.+|+.++++.++|...+.... .........+..+.|+|+||+++|++ .+++|+|+||+|++||++|||
T Consensus 1172 ~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIv 1251 (1490)
T TIGR01271 1172 VSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLL 1251 (1490)
T ss_pred HHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEE
Confidence 999999987665532111000 00000011233568999999999975 468999999999999999999
Q ss_pred cCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHH
Q 001511 478 GPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM 551 (1064)
Q Consensus 478 G~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i 551 (1064)
|+||||||||+++|+|+++ ++|+|.+||++ .++|++|+||||+|++|+||||+||.... ..+++++
T Consensus 1252 GrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-------~~tdeei 1323 (1490)
T TIGR01271 1252 GRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-------QWSDEEI 1323 (1490)
T ss_pred CCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-------CCCHHHH
Confidence 9999999999999999997 79999999976 46799999999999999999999996421 2578999
Q ss_pred HHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--Cc
Q 001511 552 VELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GT 626 (1064)
Q Consensus 552 ~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~ 626 (1064)
+++++.+++.+++.++|.+.++ +.|.+||||||||++|||||+++|+|||||||||+||.++++.|++.+++. ++
T Consensus 1324 ~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~ 1403 (1490)
T TIGR01271 1324 WKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNC 1403 (1490)
T ss_pred HHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999875444 357899999999999999999999999999999999999999999999864 89
Q ss_pred EEEEEccChhHHHhcCEEEEEeCC
Q 001511 627 SCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 627 TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|+|+||||++++..+|+|++|+++
T Consensus 1404 TvI~IaHRl~ti~~~DrIlvL~~G 1427 (1490)
T TIGR01271 1404 TVILSEHRVEALLECQQFLVIEGS 1427 (1490)
T ss_pred EEEEEecCHHHHHhCCEEEEEECC
Confidence 999999999999999999999875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-56 Score=496.10 Aligned_cols=278 Identities=29% Similarity=0.475 Sum_probs=271.1
Q ss_pred CCchhhhhccccccCCceeecCCCeeehhHHHHHHhhHHHHHHhhcCCceehhHhhcCHHHHHHHHHHHHHHhhhHHHHh
Q 001511 736 RILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIA 815 (1064)
Q Consensus 736 ~~~p~Ra~~lCri~iP~l~s~e~g~lv~c~~~lv~Rt~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~~~~~~~pas~~n 815 (1064)
..+..+...+++...|+...++.+.++.+.+++++||+++++++..+|.+.++|+++|.++|.+.++.|+++++|++++|
T Consensus 4 ~~flr~f~~L~~~~~~~~~~~~~~ll~~ll~l~l~~~~lsv~~~~~~g~~~~aL~~~d~~~f~~~l~~~~~l~~~~~~l~ 83 (281)
T PF06472_consen 4 RQFLRRFWRLARIYWPSERWKAWLLLLVLLLLLLARVYLSVRINFWNGDFYNALQQKDLQAFWRLLLLFLLLAIASALLN 83 (281)
T ss_pred hHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888899888888899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHH
Q 001511 816 PSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWR 895 (1064)
Q Consensus 816 ~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~~~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~ 895 (1064)
+..+|++.+|+++||++||+|+|+.||+|++||++.++|++++|||||||+||++||+..++||.+++||++|++.|++.
T Consensus 84 ~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~ 163 (281)
T PF06472_consen 84 SILKYLRQRLALRWREWLTRHLHDRYLSNRTYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVI 163 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCchhHHHHHHHHHHHHHHHhcCCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHH
Q 001511 896 MKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELL 975 (1064)
Q Consensus 896 l~~~~g~~g~~~~~~~~~~~~~~lr~~~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~ 975 (1064)
|++..|..++..+++|+++++.+++.++|||+++++++|++||+||+.|+|+++||||||||+|+++|+..+++.|..++
T Consensus 164 L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~ 243 (281)
T PF06472_consen 164 LWSISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALI 243 (281)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHHHHHHHh
Q 001511 976 EHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAM 1013 (1064)
Q Consensus 976 ~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~~~~~~~~~ 1013 (1064)
+|.+.+.++++++++++++++||++.++||.+|++|+|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~F 281 (281)
T PF06472_consen 244 DNWRRLIRRRLRLGFFTNFYVKYLSSILPYLVVAPPYF 281 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999999986
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=529.64 Aligned_cols=471 Identities=21% Similarity=0.270 Sum_probs=344.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHH
Q 001511 148 SENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQ 226 (1064)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~ 226 (1064)
..+.+++++..++..+..+.....+.+ ..++++++.++++.+-||+|||.. .|...+|.+.|++.+...+...+.
T Consensus 862 ~vY~~l~~~~~~~~~~rs~~~~~~~l~----aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~ 937 (1381)
T KOG0054|consen 862 GVYALLGVASSLLTLLRSFLFAKGGLK----ASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLE 937 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHH
Confidence 334444444444333444444455555 566788999999999999999975 679999999999998887776666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 001511 227 DDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQ----LHSRLRTHAESIAF 302 (1064)
Q Consensus 227 ~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~----~~~~l~~~~e~Ik~ 302 (1064)
.++..++..+ ....++.+..|...+.++.+.. +..++.+.+.+..++..+.++..|+ ...+..++..+|++
T Consensus 938 ~~~~~~~~~l-~~~~vi~~~~P~fli~~~pl~v----~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRA 1012 (1381)
T KOG0054|consen 938 FFLQSLLNVL-GILVVISYVTPWFLIAIIPLGV----IYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRA 1012 (1381)
T ss_pred HHHHHHHHHH-HHHHHhhHHhHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeee
Confidence 6665554432 2223334445544443333222 2233444555555666666666554 34566668889999
Q ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHH
Q 001511 303 YGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYH 382 (1064)
Q Consensus 303 ~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~ 382 (1064)
|+.+++..+...++.+...+...-....++|.++-..++..++..+.+++.++ ..... ...+..|. .+.|.
T Consensus 1013 f~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl---~~~~~-~~~g~vGL-----slsya 1083 (1381)
T KOG0054|consen 1013 FGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVL---LPSGL-ISPGLVGL-----SLSYA 1083 (1381)
T ss_pred ccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCCC-CCcchHHH-----HHHHH
Confidence 99999998777777776666655555667777776665543332222222221 11111 11122331 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-Ceee
Q 001511 383 TSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLV 461 (1064)
Q Consensus 383 ~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L 461 (1064)
+ ++-+.+..+.....++..-..+.||+.|..+.++|.+ ...... .+.+.++..|.|+|+|++++|..+ .++|
T Consensus 1084 l----~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p--~~~~~~-~pp~~WP~~G~I~f~~~~~RYrp~lp~VL 1156 (1381)
T KOG0054|consen 1084 L----QLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAP--LEIEES-RPPPSWPSKGEIEFEDLSLRYRPNLPLVL 1156 (1381)
T ss_pred H----HHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCC--CCCcCC-CCCCCCCCCCeEEEEEeEEEeCCCCcchh
Confidence 2 2334444555566677778899999999998776621 111111 123345678999999999999655 6899
Q ss_pred eeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcC
Q 001511 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY 535 (1064)
Q Consensus 462 ~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~ 535 (1064)
+||||+|+|||+|||||.+|||||||..+|.|+.+|.+|+|.+||.| .++|++++++||||.+|+||+|.|+.-
T Consensus 1157 k~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDP 1236 (1381)
T KOG0054|consen 1157 KGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDP 1236 (1381)
T ss_pred cCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCc
Confidence 99999999999999999999999999999999999999999999987 578999999999999999999999863
Q ss_pred CCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCc--cc-CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 001511 536 PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEK--EI-NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612 (1064)
Q Consensus 536 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~--~~-~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~ 612 (1064)
.. +.+|++++++|++++|.+++.+.|.+. .+ +.|.++|-||||.+++||||+++++||+|||+|+++|++
T Consensus 1237 -f~------e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~ 1309 (1381)
T KOG0054|consen 1237 -FD------EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPE 1309 (1381)
T ss_pred -cc------ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChH
Confidence 22 258999999999999999999988643 33 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 613 MEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 613 ~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|...|++.+++. ++|||.|+||++++-++|||+|||+|
T Consensus 1310 TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G 1349 (1381)
T KOG0054|consen 1310 TDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAG 1349 (1381)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCC
Confidence 999999999984 99999999999999999999999975
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=523.68 Aligned_cols=506 Identities=15% Similarity=0.167 Sum_probs=333.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLI-SENILLCF-LLSTMHSTSKYITGTLSLQFRKIVTKLIH 184 (1064)
Q Consensus 107 ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l-~~~~~l~~-~~~~~~~~~~yl~~~l~~~~r~~L~~~l~ 184 (1064)
++..+++.++.+.++...|.+.+.+++.+.+...+...... +..++++. +.+++.....+....++.+ +...++
T Consensus 319 ~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----ir~~L~ 394 (1522)
T TIGR00957 319 FLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMR----IKTAVM 394 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 44445566666777788888888888876543222111111 11111111 1112222223344455555 555667
Q ss_pred HHHHhhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHH
Q 001511 185 TRYFENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWI-LAYVLGAG 262 (1064)
Q Consensus 185 ~~~f~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~-l~~~~l~~ 262 (1064)
...|+|+++++..++++. .++..+++++|++++.+.. ..+..+...++..++..+. ++..++.+.++ ++++++..
T Consensus 395 ~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~l--l~~~~g~~~l~~l~~~~~~~ 471 (1522)
T TIGR00957 395 GAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYF--LWLNLGPSVLAGVAVMVLMV 471 (1522)
T ss_pred HHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHH
Confidence 788999999998887664 5689999999999987643 2333333333322222222 22333322222 22223333
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 263 TMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLL 342 (1064)
Q Consensus 263 ~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~ 342 (1064)
.+...+++.+.+...+..+...+......+..++++.||+|+.|+...+++++..++..+..++. .+ ...+..+..
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~---~~-~~~~~~~~~ 547 (1522)
T TIGR00957 472 PLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKS---AY-LHAVGTFTW 547 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHH
Confidence 33444556666666555555555556788888999999999999988766655544433322211 11 111111111
Q ss_pred HHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 001511 343 KYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRE 422 (1064)
Q Consensus 343 ~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~ 422 (1064)
..... +..++.+..+. +..+..+++.+..++.+.+ +..+..|+..+......+.++..+.+|+.++++.+++
T Consensus 548 ~~~~~-~~~~~~f~~~~---~~~~~~~l~~~~~f~~l~l----~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~ 619 (1522)
T TIGR00957 548 VCTPF-LVALITFAVYV---TVDENNILDAEKAFVSLAL----FNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEEL 619 (1522)
T ss_pred HHHHH-HHHHHHHHHHH---HhcCCCCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 11111 11111111111 0011123333333443322 3334567888888889999999999999999976543
Q ss_pred cccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccE
Q 001511 423 LSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501 (1064)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~ 501 (1064)
.... ..... ......+.++++|++|.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 620 ~~~~---~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~ 694 (1522)
T TIGR00957 620 EPDS---IERRT--IKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 694 (1522)
T ss_pred cccc---ccccc--cCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcE
Confidence 2110 00000 000112369999999999753 57999999999999999999999999999999999999999999
Q ss_pred EEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCC
Q 001511 502 IAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDE 578 (1064)
Q Consensus 502 I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~ 578 (1064)
|.++| +|+||||+|+++++||+|||.++.. .++++..++++.+++.+.++.+|.+.++ +.|.+
T Consensus 695 i~~~g-------~i~yv~Q~~~l~~~Ti~eNI~~g~~-------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~ 760 (1522)
T TIGR00957 695 VHMKG-------SVAYVPQQAWIQNDSLRENILFGKA-------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVN 760 (1522)
T ss_pred EEECC-------EEEEEcCCccccCCcHHHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCC
Confidence 99987 6999999999999999999998753 2345677788888998888888875433 36789
Q ss_pred cChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh-----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA-----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 579 LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~-----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
||||||||++||||++++|+++|||||||+||+.+++.+.+.+.+ .++|+|+|||+++.+..+|+|++|+++
T Consensus 761 LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G 837 (1522)
T TIGR00957 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGG 837 (1522)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCC
Confidence 999999999999999999999999999999999999999887742 379999999999999999999999864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-51 Score=461.24 Aligned_cols=492 Identities=19% Similarity=0.217 Sum_probs=338.8
Q ss_pred HHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 001511 119 ALSNRLAKVQGFLFRAAFLR-RVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKIS 197 (1064)
Q Consensus 119 ~ls~~l~~~~~~~i~a~~~~-~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~ 197 (1064)
.+.+..|...=.++|.+... +.+.... ..++++.+.++..+..++...+-.++-.++...+....|......+..
T Consensus 37 iL~L~~~lyMLQVyDRVL~S~s~~TLv~----Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~ 112 (580)
T COG4618 37 LLALTGPLYMLQVYDRVLPSRSVPTLVM----LTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLL 112 (580)
T ss_pred HHHHhhhHHHHHHHhhhccCCCcchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHh
Confidence 44445566666677766543 3333222 122223333344556666777777777778888888888877655543
Q ss_pred cccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHH-H
Q 001511 198 HVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGL---LYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAF-G 273 (1064)
Q Consensus 198 ~~~~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~---~~~~~l~~~~~~~L~li~l~~~~l~~~i~~~~~~~~-~ 273 (1064)
-. ..++-. -.-+|.+++.+++.. ..+..++|.. +|. .+++.++|.+.++.++...+++.+.. +.... +
T Consensus 113 ~~--~~g~~~-Q~LrDL~qvR~Fltg---~g~~A~fDaPW~P~yl-~v~fl~Hp~lG~~a~~ga~iLv~la~-ln~~~t~ 184 (580)
T COG4618 113 RR--GSGDGL-QPLRDLDQVRQFLTG---TGLTAFFDAPWMPLYL-AVIFLFHPWLGLIALAGAIILVVLAL-LNERATR 184 (580)
T ss_pred hc--CCCccc-cchhhHHHHHHHHcC---CCcchhcCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 21 112212 234588875554432 1233444432 232 22344578777776654443333222 22222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 274 KLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVIL 353 (1064)
Q Consensus 274 k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 353 (1064)
+..++..+....-+...+....|+|+|++.|....-.++|.+...............+...+..+..+-..+.. .++
T Consensus 185 ~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs---~iL 261 (580)
T COG4618 185 KPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQS---AVL 261 (580)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 22233333344444566777779999999999999998888877776665443322222222223322222221 122
Q ss_pred hhhhhhccccc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCC
Q 001511 354 IIEPFFAGNLK-PDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQR 432 (1064)
Q Consensus 354 ~~~~~~~g~l~-~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~ 432 (1064)
. .|+++. .+..|-|. +++. ..++.....|+-.....++.+..+..+.+|+.+++...++.... -
T Consensus 262 g----~GA~Lvi~ge~t~G~--mIA~----SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~---m-- 326 (580)
T COG4618 262 G----LGAWLVIKGEITPGM--MIAG----SILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAER---M-- 326 (580)
T ss_pred h----cceeeEEcCcCCcch--hhHH----HHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC---C--
Confidence 2 233333 23445553 2221 11234555677778888999999999999999999876543211 0
Q ss_pred CCCCCCCCCCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---
Q 001511 433 NGSRNYFSEANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--- 508 (1064)
Q Consensus 433 ~~~~~~~~~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--- 508 (1064)
..+...+.+.+|++++..|+. +++|+|+||++.+||.++||||||||||||.|+|.|.|+|.+|.|++||-+
T Consensus 327 ----~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~q 402 (580)
T COG4618 327 ----PLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ 402 (580)
T ss_pred ----CCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhc
Confidence 111125689999999987764 589999999999999999999999999999999999999999999999965
Q ss_pred ---ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccC---CCCCcChH
Q 001511 509 ---SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN---WGDELSLG 582 (1064)
Q Consensus 509 ---~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~---~g~~LSGG 582 (1064)
+++.++|||+|||..+|.|||.|||+-..+ +.+++++.++.+.+|.+|++-++|++|++. .|..||||
T Consensus 403 Wd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~------~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgG 476 (580)
T COG4618 403 WDREQLGRHIGYLPQDVELFDGTIAENIARFGE------EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGG 476 (580)
T ss_pred CCHHHhccccCcCcccceecCCcHHHHHHhccc------cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCch
Confidence 456789999999999999999999985432 257788999999999999999999988874 57899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH---HhcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV---RAMGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l---~~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|||||++||||+.+|.+++||||-|+||.+.|..+.+.+ ++.|.|+|+||||++.+..+|+|++|+++
T Consensus 477 QRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G 547 (580)
T COG4618 477 QRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDG 547 (580)
T ss_pred HHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCC
Confidence 999999999999999999999999999999999998876 45799999999999999999999999875
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-52 Score=458.33 Aligned_cols=447 Identities=18% Similarity=0.233 Sum_probs=321.4
Q ss_pred HHHHHHHHHHhhhhccccccccCCCCChhHHHHc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 001511 179 VTKLIHTRYFENMAYYKISHVDGRITHPEQRLAS-DVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAY 257 (1064)
Q Consensus 179 L~~~l~~~~f~~~~~~~i~~~~~~~~n~~qRit~-Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~ 257 (1064)
..+.+.-+.|.|+..+++.|+-++.+.+.+|..+ ....+...+..++...+..++........++...+|..++++++.
T Consensus 13 a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vt 92 (497)
T COG5265 13 AVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVT 92 (497)
T ss_pred HHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 3444556678899999998886554444443322 122233333344444455555544433444445688887777655
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 258 VLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMI 337 (1064)
Q Consensus 258 ~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~ 337 (1064)
+.+..++.....-......+...+..++.........-|-|++|.|+.|+.|..++.+..+...+...+....-.+..+.
T Consensus 93 v~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~g 172 (497)
T COG5265 93 VILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFG 172 (497)
T ss_pred HHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHh
Confidence 44443333322221112222333333443443333444889999999999998665555544444333322223334444
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcc-cccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 338 QDFLLKYLGATVAVILIIEPFFAG-NLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHEL 416 (1064)
Q Consensus 338 ~~~~~~~~~~~~~~il~~~~~~~g-~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~el 416 (1064)
+..+... + ...... .+. ....+.+|+|...+.. .++.++..|+.-++..++++.+...-.++.+++
T Consensus 173 Q~~I~~~-~--l~~~m~----~s~~~v~~g~~TvgD~V~~N------all~qls~Plnflg~~Yrei~q~ltdme~mfdL 239 (497)
T COG5265 173 QTAIFST-G--LRVMMT----MSALGVEEGQLTVGDLVNVN------ALLFQLSIPLNFLGFSYREIRQALTDMEKMFDL 239 (497)
T ss_pred hHHHHHH-H--HHHHHh----hcHHHHhhccCCchhHHhHH------HHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHh
Confidence 4433211 1 111111 111 1223456777644333 234566678888888999999999999999999
Q ss_pred HhhchhcccCCCCCCCCCCCCCC-CCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC
Q 001511 417 MVISRELSIEDKSPQRNGSRNYF-SEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW 495 (1064)
Q Consensus 417 l~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~ 495 (1064)
++.+.+..+..... ... ...+.+.|+||+|.|...+++|+++||++++|+.+++|||||+||||++++|.++|
T Consensus 240 l~~~~~v~d~pda~------~L~~~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy 313 (497)
T COG5265 240 LDVEAEVSDAPDAP------PLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY 313 (497)
T ss_pred hccchhhccCCCCc------cccccccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh
Confidence 98877765422111 111 23467999999999988899999999999999999999999999999999999999
Q ss_pred CCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCC
Q 001511 496 PLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPP 569 (1064)
Q Consensus 496 ~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~ 569 (1064)
++++|.|.+||+| +++|+.||+||||..+|++|+..|+.|+.+. .+++++..+++.+.+++++..+|.
T Consensus 314 D~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~------at~eev~aaa~~aqi~~fi~~lP~ 387 (497)
T COG5265 314 DVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPD------ATAEEVGAAAEAAQIHDFIQSLPE 387 (497)
T ss_pred CCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCcc------ccHHHHHHHHHHhhhhHHHHhCch
Confidence 9999999999987 4689999999999999999999999998764 688999999999999999999998
Q ss_pred Cccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEE
Q 001511 570 EKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVV 644 (1064)
Q Consensus 570 ~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~I 644 (1064)
++.+ ++|-.|||||||||||||+++++|+|++|||+||+||..+|++++..+++ .|+|.++|+||++++..+|.|
T Consensus 388 gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adei 467 (497)
T COG5265 388 GYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEI 467 (497)
T ss_pred hhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceE
Confidence 7665 36778999999999999999999999999999999999999999999986 599999999999999999999
Q ss_pred EEEeCC
Q 001511 645 LSLDGE 650 (1064)
Q Consensus 645 l~l~~~ 650 (1064)
+||+++
T Consensus 468 ivl~~g 473 (497)
T COG5265 468 IVLDNG 473 (497)
T ss_pred EEeeCC
Confidence 999975
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=493.65 Aligned_cols=495 Identities=16% Similarity=0.186 Sum_probs=319.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhH-HHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 110 LVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPL-FFQL-ISENILLC-FLLSTMHSTSKYITGTLSLQFRKIVTKLIHTR 186 (1064)
Q Consensus 110 ~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~-~~~~-l~~~~~l~-~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~ 186 (1064)
.++..++...+....|.+.+.+++.+.....+. .... ++..++++ ++..++.....|....++.++|.. +...
T Consensus 85 ~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~----L~~~ 160 (1490)
T TIGR01271 85 YGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIA----LFSL 160 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 333445666777788888888887763211111 1111 11111111 111122333445555666665544 4567
Q ss_pred HHhhhhccccccccC-CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 001511 187 YFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMM 265 (1064)
Q Consensus 187 ~f~~~~~~~i~~~~~-~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~l~~~i~ 265 (1064)
.|+|.++++...+++ ..+...+++++|++++...+..+ ..+....+..+++.+.++.... ..+++.++++++...+.
T Consensus 161 iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G-~~~l~~l~v~~~~~~~~ 238 (1490)
T TIGR01271 161 IYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLE-VNGFCGLGFLILLALFQ 238 (1490)
T ss_pred HHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 799999999877765 35788999999999987755433 2222222222222222222222 23333344444445555
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 266 RNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYL 345 (1064)
Q Consensus 266 ~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1064)
.++++++.+...+..+...+......++.++++.||+|+-|+.+.+++++.-++-.+..++.. +.. .+...+...
T Consensus 239 ~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~---~~~-~~~~~~~~~- 313 (1490)
T TIGR01271 239 ACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIA---YLR-YFYSSAFFF- 313 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHH-
Confidence 666777766666555555555567888899999999999999887554443332222222211 111 111111111
Q ss_pred HHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhchhcc
Q 001511 346 GATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSL-GTLSISSRRLNRLSGYADRIHELMVISRELS 424 (1064)
Q Consensus 346 ~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i-~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~~ 424 (1064)
...++.++.+ +++...+..+++ ..++.+.++.. +..++ ..+......+.++..+++||.+++..++...
T Consensus 314 ~~~~~~~~~f----~~y~~~~~~~~~--~~ft~lal~~l----L~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~ 383 (1490)
T TIGR01271 314 SGFFVVFLSV----VPYALIKGIILR--RIFTTISYCIV----LRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKT 383 (1490)
T ss_pred HHHHHHHHHH----HHHHHhCCCcHH--HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 1111111111 111111122333 33343332221 11233 3466677788889999999999997543211
Q ss_pred cCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCC---------------------------------CCeeeeeceEEEeCC
Q 001511 425 IEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT---------------------------------GNVLVENLTLKVEPG 471 (1064)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~---------------------------------~~~~L~~vsl~i~~G 471 (1064)
... . .....++++|++|.|+. .+++|+|+||+|++|
T Consensus 384 ~~~-----~------~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G 452 (1490)
T TIGR01271 384 LEY-----N------LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKG 452 (1490)
T ss_pred ccc-----c------CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCC
Confidence 000 0 01123666666666531 146899999999999
Q ss_pred CEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHH
Q 001511 472 SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM 551 (1064)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i 551 (1064)
|.++|+||||||||||+++|+|+++|++|+|.++| +|+||||+|+++++||+|||.++... ++++.
T Consensus 453 ~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------~iayv~Q~~~l~~~Ti~eNI~~g~~~-------~~~~~ 518 (1490)
T TIGR01271 453 QLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------RISFSPQTSWIMPGTIKDNIIFGLSY-------DEYRY 518 (1490)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------EEEEEeCCCccCCccHHHHHHhcccc-------chHHH
Confidence 99999999999999999999999999999999988 59999999999999999999987532 23456
Q ss_pred HHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHh--cC
Q 001511 552 VELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAK-VRA--MG 625 (1064)
Q Consensus 552 ~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~-l~~--~g 625 (1064)
.++++.+++.+.++.+|.+..+ +.|.+|||||||||+||||++.+|+++||||||||||+.+++++.+. +.+ .|
T Consensus 519 ~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~ 598 (1490)
T TIGR01271 519 TSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSN 598 (1490)
T ss_pred HHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 6778888898888888875443 35789999999999999999999999999999999999999999874 433 48
Q ss_pred cEEEEEccChhHHHhcCEEEEEeCC
Q 001511 626 TSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 626 ~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+|+|+|||+++.+..||+|++|+++
T Consensus 599 ~tvilvtH~~~~~~~ad~ii~l~~g 623 (1490)
T TIGR01271 599 KTRILVTSKLEHLKKADKILLLHEG 623 (1490)
T ss_pred CeEEEEeCChHHHHhCCEEEEEECC
Confidence 9999999999999999999999964
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-46 Score=488.46 Aligned_cols=508 Identities=16% Similarity=0.145 Sum_probs=318.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCF----LLSTMHSTSKYITGTLSLQFRKIVTKL 182 (1064)
Q Consensus 107 ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~----~~~~~~~~~~yl~~~l~~~~r~~L~~~ 182 (1064)
+++.+++.++..++....|.+.+.+++.+........+.. + .+++++ +.+++.....|.....+.++|..+
T Consensus 246 ~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~-~-l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L--- 320 (1560)
T PTZ00243 246 VWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGL-G-LVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSAL--- 320 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4455666677778888999999999986533222111111 1 111111 112223334456666666655544
Q ss_pred HHHHHHhhhhcccccccc---CCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 001511 183 IHTRYFENMAYYKISHVD---GRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVL 259 (1064)
Q Consensus 183 l~~~~f~~~~~~~i~~~~---~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~ 259 (1064)
....|+|.+..+..... ...++..+.+++|++++...+..+ ..+....+..++..+.|...+.| .+++.+++++
T Consensus 321 -~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~-~~l~~~Pl~li~~~~lL~~~lG~-~al~gv~vl~ 397 (1560)
T PTZ00243 321 -NALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYC-MYLWSSPMVLLLSILLLSRLVGW-CALMAVAVLL 397 (1560)
T ss_pred -HHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHH
Confidence 56668888888765543 235678899999999987765433 22222332222222222222222 3333333333
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 260 GAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQD 339 (1064)
Q Consensus 260 l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~ 339 (1064)
+...+..++.++..+...+..+....-.....++..+++.||+++-|+...+++++.-++-.+..++. ..... +..
T Consensus 398 v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~---~~~~~-~~~ 473 (1560)
T PTZ00243 398 VTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDV---QLARV-ATS 473 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHH
Confidence 33334445555555554444444433345678888899999999999988765554332222222211 11111 111
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001511 340 FLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVI 419 (1064)
Q Consensus 340 ~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~ 419 (1064)
++.......+.+ +.+..|. ...+..+.| .+++.+. ++..+..|+..+...+..+.++..+++||.++++.
T Consensus 474 ~~~~~~p~l~~~-~~f~~y~---~~g~~Lt~~--~vft~la----L~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~ 543 (1560)
T PTZ00243 474 FVNNATPTLMIA-VVFTVYY---LLGHELTPE--VVFPTIA----LLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLEC 543 (1560)
T ss_pred HHHHHHHHHHHH-HHHHHHH---HhCCCCCHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 111111111111 1111111 112233444 3444333 23344457777778888899999999999999975
Q ss_pred chhcc----c--C------C-C---CC----CCC-----------------C---------------CCCCCCCCCcEEE
Q 001511 420 SRELS----I--E------D-K---SP----QRN-----------------G---------------SRNYFSEANYIEF 447 (1064)
Q Consensus 420 ~~~~~----~--~------~-~---~~----~~~-----------------~---------------~~~~~~~~~~i~~ 447 (1064)
++... . . . . .. ... . ........+.+.+
T Consensus 544 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (1560)
T PTZ00243 544 DNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVV 623 (1560)
T ss_pred ccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccc
Confidence 43100 0 0 0 0 00 000 0 0000001124566
Q ss_pred EeeEEEcC---------------------------------------CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHH
Q 001511 448 SGVKVVTP---------------------------------------TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLF 488 (1064)
Q Consensus 448 ~nvs~~y~---------------------------------------~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl 488 (1064)
+|+++.++ +++++|+|+||+|++||+++|+||||||||||+
T Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL 703 (1560)
T PTZ00243 624 EDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLL 703 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHH
Confidence 66655421 234689999999999999999999999999999
Q ss_pred HHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCC
Q 001511 489 RVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 568 (1064)
Q Consensus 489 ~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p 568 (1064)
++|+|+++|++|+|.+++ +|+|+||+|+++++|++|||.++.. .+.++..++++.+++++.++.+|
T Consensus 704 ~~i~G~~~~~~G~i~~~~-------~i~yv~Q~~~l~~~Tv~enI~~~~~-------~~~~~~~~~~~~~~l~~~l~~l~ 769 (1560)
T PTZ00243 704 QSLLSQFEISEGRVWAER-------SIAYVPQQAWIMNATVRGNILFFDE-------EDAARLADAVRVSQLEADLAQLG 769 (1560)
T ss_pred HHHhcCCCCCCcEEEECC-------eEEEEeCCCccCCCcHHHHHHcCCh-------hhHHHHHHHHHHhhhHHHHHHhh
Confidence 999999999999998753 7999999999999999999998642 23456777888889998888888
Q ss_pred CCccc---CCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-H--hcCcEEEEEccChhHHHhcC
Q 001511 569 PEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-R--AMGTSCITISHRPALVAFHD 642 (1064)
Q Consensus 569 ~~~~~---~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l-~--~~g~TvI~ItH~l~~i~~~D 642 (1064)
.+..+ ..|.+|||||||||+|||||+.+|+++|||||||+||+.+++.+.+.+ . ..|+|+|+|||+++.+..+|
T Consensus 770 ~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad 849 (1560)
T PTZ00243 770 GGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRAD 849 (1560)
T ss_pred ccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCC
Confidence 65433 357899999999999999999999999999999999999988876632 2 24899999999999999999
Q ss_pred EEEEEeCC
Q 001511 643 VVLSLDGE 650 (1064)
Q Consensus 643 ~Il~l~~~ 650 (1064)
+|++|+++
T Consensus 850 ~ii~l~~G 857 (1560)
T PTZ00243 850 YVVALGDG 857 (1560)
T ss_pred EEEEEECC
Confidence 99999964
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-52 Score=453.43 Aligned_cols=272 Identities=27% Similarity=0.345 Sum_probs=230.3
Q ss_pred EEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-C----CccEEEeCCCC------c-
Q 001511 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-L----VSGHIAKPGVG------S- 509 (1064)
Q Consensus 445 i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-p----~~G~I~i~g~~------~- 509 (1064)
++++|++++|+.. ..+++||||++++||++||||+|||||||+.++|+|+++ | .+|+|.++|.+ +
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 6899999998653 479999999999999999999999999999999999998 4 57999999975 1
Q ss_pred --cc-cccEEEEecCCC---CCcccHHHHhcCCCCCCCcC--CCCCHHHHHHHHHhcCChh---HHhcCCCCcccCCCCC
Q 001511 510 --DL-NKEIFYVPQRPY---TAVGTLRDQLIYPLTSDQEV--EPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDE 578 (1064)
Q Consensus 510 --~l-r~~i~~v~Q~p~---l~~~Ti~eni~~~~~~~~~~--~~~~~~~i~~~l~~~~L~~---~~~~~p~~~~~~~g~~ 578 (1064)
.+ .+.|+||||||. .|..||.+++......+... .++..+++.++|+.+|+++ .++.||+ +
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPh--------e 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPH--------E 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCc--------c
Confidence 23 368999999996 35579999998766544321 2234568899999999974 6789997 9
Q ss_pred cChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCce
Q 001511 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEW 653 (1064)
Q Consensus 579 LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~ 653 (1064)
|||||||||.||.||+.+|++||+||||+|||+.+++++++++++ .|.|+|+||||++.+. .||+|.
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~-------- 225 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVA-------- 225 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEE--------
Confidence 999999999999999999999999999999999999999887753 5999999999999876 576665
Q ss_pred EEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCCCCCCCCCCCCCCC
Q 001511 654 RVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVFPQLKS 733 (1064)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~~~~~~~~~~~~ 733 (1064)
|||+|+++|.++.+++|++ |.||||++|+++.|.. ..++..+||.+|
T Consensus 226 ------------------------------VMYaG~iVE~g~~~~i~~~-P~HPYT~~Ll~s~P~~--~~~l~~ipG~~p 272 (316)
T COG0444 226 ------------------------------VMYAGRIVEEGPVEEIFKN-PKHPYTRGLLNSLPRL--GERLPPIPGSPP 272 (316)
T ss_pred ------------------------------EEECcEEEEeCCHHHHhcC-CCChHHHHHHHhCccc--cCCcCCCCCCCC
Confidence 5667888899999999987 7999999999999987 556778899888
Q ss_pred CCCCchh---------hhhccccccCCceeecCCCeeehhH
Q 001511 734 APRILPL---------RVADMFKVLVPTVFDKQGAQLLAVA 765 (1064)
Q Consensus 734 ~~~~~p~---------Ra~~lCri~iP~l~s~e~g~lv~c~ 765 (1064)
+....|. ++.+.|+...|.+.....+|.++|-
T Consensus 273 ~l~~~p~GC~F~pRC~~a~~~c~~~~P~~~~~~~~~~~~c~ 313 (316)
T COG0444 273 SLLNPPKGCRFHPRCPYAMERCREEEPPLRELGGGHKVRCW 313 (316)
T ss_pred cccCCCCCCccccccchhHhhcccCCCCccccCCCeeeecc
Confidence 8887663 5888999998886655667999885
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=416.06 Aligned_cols=224 Identities=26% Similarity=0.351 Sum_probs=192.7
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i~ 516 (1064)
.|+++||+++|. +..+|+|||++|++||+++|+||||||||||+|+|.||.+|++|+|.++|.+ ..+|+++|
T Consensus 2 mi~i~~l~K~fg-~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEeC-CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 589999999994 6789999999999999999999999999999999999999999999999953 24789999
Q ss_pred EEecCCCCCc-ccHHHHhcCCCC-CCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~-~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+|||+..+|. .|+.||+.++.. ..+..+.+.++++.++|+++||.+..+.||. +|||||||||||||||+
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~--------qLSGGQqQRVAIARALa 152 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA--------QLSGGQQQRVAIARALA 152 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc--------ccCcHHHHHHHHHHHHc
Confidence 9999999875 699999998643 2233333556778889999999999999995 99999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHH---HhcCcEEEEEccChhHHH-hcCEEEEEeCCCceEEeecCCCccccccccc
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKV---RAMGTSCITISHRPALVA-FHDVVLSLDGEGEWRVHDKRDGSSVVTKSGI 670 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l---~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~~~~~~~~~~~~~~~~~ 670 (1064)
.+|+++++|||||||||+...++++.+ .+.|.|.|+|||++..++ .+|||+.||++-
T Consensus 153 M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~------------------- 213 (240)
T COG1126 153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGK------------------- 213 (240)
T ss_pred CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCE-------------------
Confidence 999999999999999999999877655 456999999999999997 589999999641
Q ss_pred ccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhc
Q 001511 671 NMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAA 715 (1064)
Q Consensus 671 ~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~ 715 (1064)
++|.++.++.|.+ |.||+|+.-++.
T Consensus 214 -------------------iie~g~p~~~f~~-p~~~R~~~FL~~ 238 (240)
T COG1126 214 -------------------IIEEGPPEEFFDN-PKSERTRQFLSK 238 (240)
T ss_pred -------------------EEEecCHHHHhcC-CCCHHHHHHHHh
Confidence 2223444566665 799999988764
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=417.91 Aligned_cols=228 Identities=32% Similarity=0.448 Sum_probs=198.4
Q ss_pred cEEEEeeEEEcCCCC---eeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccc
Q 001511 444 YIEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNK 513 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~---~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~ 513 (1064)
.++++|+++.|+.++ ++|+||||+|.+||++||+||||||||||.|+|+|+.+|++|+|.++|.. ...++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 689999999997655 69999999999999999999999999999999999999999999999954 23578
Q ss_pred cEEEEecCCC---CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 514 EIFYVPQRPY---TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 514 ~i~~v~Q~p~---l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
.|.+|||||+ .|..||++.|..|...++.. ...+++.++|+.+|+. .+++++|+ +|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~--~~~~~i~~~L~~VgL~~~~l~R~P~--------eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLS--KSQQRIAELLDQVGLPPSFLDRRPH--------ELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCcc--HHHHHHHHHHHHcCCCHHHHhcCch--------hcChhHHHHHHH
Confidence 9999999997 35679999999887654322 2445699999999996 78999996 899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEccChhHHHh-cCEEEEEeCCCceEEeecCCCccc
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALVAF-HDVVLSLDGEGEWRVHDKRDGSSV 664 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~----~~g~TvI~ItH~l~~i~~-~D~Il~l~~~g~~~~~~~~~~~~~ 664 (1064)
||||..+|++||||||||+||+..+.++++++. +.|.|+|+||||++.+.+ ||||.+|+++
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G-------------- 218 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNG-------------- 218 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCC--------------
Confidence 999999999999999999999999999888764 358999999999999875 8888888764
Q ss_pred ccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCC
Q 001511 665 VTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIAD 720 (1064)
Q Consensus 665 ~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~ 720 (1064)
+++|..++.+++.+ |.||||+.|++++|...
T Consensus 219 ------------------------~ivE~~~~~~l~~~-~~h~ytr~Ll~a~~~~~ 249 (252)
T COG1124 219 ------------------------QIVEIGPTEELLSH-PSHPYTRELLEAVPSID 249 (252)
T ss_pred ------------------------eEEEeechhhhhcC-CccHHHHHHHHhhhccc
Confidence 34555667777776 89999999999998754
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=426.40 Aligned_cols=227 Identities=26% Similarity=0.356 Sum_probs=202.2
Q ss_pred cEEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---------cc
Q 001511 444 YIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SD 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~ 510 (1064)
+|+++||++.|+.+ ..+|+||||+|++||++||+|.||+|||||+|++.+|..|++|+|.++|.+ ..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 48999999999752 479999999999999999999999999999999999999999999999965 24
Q ss_pred ccccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 511 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 511 lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
.|++|||+||++.++. .||.+|++||....+..+.+..+++.++|+.+||++..++||. +|||||||||+|
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~--------qLSGGQKQRVaI 152 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPA--------QLSGGQKQRVAI 152 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCch--------hcCcchhhHHHH
Confidence 6899999999998876 7999999999887665555667889999999999999999994 999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCceEEeecCCCccc
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEWRVHDKRDGSSV 664 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~~~~~~~~~~~ 664 (1064)
||||+.+|+||++|||||||||++.+.|+++|++ .|.|+++|||.++.++ .|||+.+|+++
T Consensus 153 ARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G-------------- 218 (339)
T COG1135 153 ARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQG-------------- 218 (339)
T ss_pred HHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCC--------------
Confidence 9999999999999999999999999999988764 5999999999999997 59999988853
Q ss_pred ccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCC
Q 001511 665 VTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASP 717 (1064)
Q Consensus 665 ~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p 717 (1064)
+++|.+...++|.+ |+|+-|++++...-
T Consensus 219 ------------------------~lvE~G~v~~vF~~-Pk~~~t~~fi~~~~ 246 (339)
T COG1135 219 ------------------------RLVEEGTVSEVFAN-PKHAITQEFIGETL 246 (339)
T ss_pred ------------------------EEEEeccHHHhhcC-cchHHHHHHHHhhc
Confidence 34555667788875 79999999998554
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=447.69 Aligned_cols=496 Identities=18% Similarity=0.224 Sum_probs=317.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001511 113 IVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLIS-ENILLC-FLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFEN 190 (1064)
Q Consensus 113 l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~-~~~~l~-~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~ 190 (1064)
+..+...+....|.+.+.+++.+.+...+.....+. ..++++ ++-+++..-..|....++.++|..+. ...|+|
T Consensus 209 ~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~----~~IY~K 284 (1381)
T KOG0054|consen 209 FLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALI----SAIYRK 284 (1381)
T ss_pred HHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHH----HHHHHh
Confidence 333334445577888888888776553222111111 111111 11222333445667778888777664 566888
Q ss_pred hhccccccc-cCCCCChhHHHHchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 001511 191 MAYYKISHV-DGRITHPEQRLASDVPRFCSELSEL---VQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMR 266 (1064)
Q Consensus 191 ~~~~~i~~~-~~~~~n~~qRit~Di~~~~~~i~~l---~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~l~~~i~~ 266 (1064)
.+++.-... +...|+..+=++.|++++.+....+ ....+..++ ++.+.|..+.+....-.+++++++|+..+
T Consensus 285 ~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~-~l~lLy~~LG~sa~~G~~~~il~~p~n~~--- 360 (1381)
T KOG0054|consen 285 ALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIIL-ALYLLYGLLGPSALAGVAVMVLLIPLNSF--- 360 (1381)
T ss_pred hhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhChHHHHHHHHHHHHHHHHHH---
Confidence 888876554 3346788899999999987654432 222222222 11112222111111111122223333333
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 267 NFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLG 346 (1064)
Q Consensus 267 ~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (1064)
+++...+...+..+...+--....|+.++++.||+|+=|+.+.+++++.=++-.+..++ .....++. .++.....
T Consensus 361 -~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk---~~~~~~~~-~~~~~~~p 435 (1381)
T KOG0054|consen 361 -LAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRK---SAYLSALN-SFLNFFSP 435 (1381)
T ss_pred -HHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHH
Confidence 34444444333333322223467888999999999998887764443322211111111 11111111 11110111
Q ss_pred HHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccC
Q 001511 347 ATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIE 426 (1064)
Q Consensus 347 ~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~~~~Ri~ell~~~~~~~~~ 426 (1064)
.++.++.+..+.. ...+..+.. ..+..+ +++..+-.|+..+......+.++..+.+|+.+++..++.....
T Consensus 436 -~lv~~~tF~~~v~--~~~~~lt~~--~aF~sl----alfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~ 506 (1381)
T KOG0054|consen 436 -VLVSVVTFVVFVL--LLGNLLTAS--TAFTSL----ALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDS 506 (1381)
T ss_pred -HHHHHHHHHHHhh--ccCccccHh--HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccc
Confidence 1111111111110 111112221 122222 2333344566677778888889999999999998755432211
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEeeEEEcCC--CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEe
Q 001511 427 DKSPQRNGSRNYFSEANYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504 (1064)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~--~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i 504 (1064)
. . . .........++++|.++.+.+ ..+.|+||||+|++|+.+||||+.|||||||+.+|+|..+..+|++.+
T Consensus 507 ~-~--~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v 580 (1381)
T KOG0054|consen 507 V-E--R---SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAV 580 (1381)
T ss_pred c-c--c---CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEE
Confidence 1 0 0 011122457999999998754 345999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcCh
Q 001511 505 PGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSL 581 (1064)
Q Consensus 505 ~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSG 581 (1064)
+| .++||||.||++++||||||.||.+ .++++-.++++.++|...++-+|.+..+ ++|.+|||
T Consensus 581 ~g-------siaYv~Q~pWI~ngTvreNILFG~~-------~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSG 646 (1381)
T KOG0054|consen 581 NG-------SVAYVPQQPWIQNGTVRENILFGSP-------YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSG 646 (1381)
T ss_pred cC-------eEEEeccccHhhCCcHHHhhhcCcc-------ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcH
Confidence 98 5999999999999999999999965 4677888999999999999999986554 47889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
||||||++|||+++|+||++||+|.||+|..+.+++++..-. .++|+|++||.++.++.+|.|++|++|
T Consensus 647 GQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G 718 (1381)
T KOG0054|consen 647 GQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDG 718 (1381)
T ss_pred hHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCC
Confidence 999999999999999999999999999999999998875433 389999999999999999999999984
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=423.38 Aligned_cols=275 Identities=24% Similarity=0.325 Sum_probs=216.6
Q ss_pred CCcEEEEeeEEEcCC------------CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-
Q 001511 442 ANYIEFSGVKVVTPT------------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~------------~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~- 508 (1064)
...|+++||++.|+. ..++++||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 357999999999963 2469999999999999999999999999999999999999999999999964
Q ss_pred c--------cccccEEEEecCCC--CC-cccHHHHhcCCCCCCC--cCCCCCHHHHHHHHHhcCC-hhHHhcCCCCcccC
Q 001511 509 S--------DLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSDQ--EVEPLTHGGMVELLKNVDL-EYLLDRYPPEKEIN 574 (1064)
Q Consensus 509 ~--------~lr~~i~~v~Q~p~--l~-~~Ti~eni~~~~~~~~--~~~~~~~~~i~~~l~~~~L-~~~~~~~p~~~~~~ 574 (1064)
. .+|++|+||||+|. ++ ..|+.|||.++...+. .......+++.++++.+++ ++..+++|+
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~----- 160 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPH----- 160 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcc-----
Confidence 1 24678999999983 44 5799999987532211 1111234567789999999 467788885
Q ss_pred CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001511 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1064)
Q Consensus 575 ~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1064)
+|||||||||+|||||+.+|++||+||||++||+.++.++.+.+++ .|.|+|+||||++.+. .||+|++|.+
T Consensus 161 ---~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 161 ---EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred ---cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999998887753 3899999999999986 5999999975
Q ss_pred CCceEEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCCCC----CCC
Q 001511 650 EGEWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHN----VPL 725 (1064)
Q Consensus 650 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~----~~~ 725 (1064)
+ .. +|.+..++++.+ |.||||+.|+++.|..++. ...
T Consensus 238 G--~i------------------------------------ve~g~~~~i~~~-~~~py~~~l~~~~~~~~~~~~~~~~~ 278 (331)
T PRK15079 238 G--HA------------------------------------VELGTYDEVYHN-PLHPYTKALMSAVPIPDPDLERNKTI 278 (331)
T ss_pred C--EE------------------------------------EEEcCHHHHHcC-CCCHHHHHHHhhCCCccccccccccc
Confidence 3 12 222334455554 7999999999999864321 112
Q ss_pred CCCCCCCCCCCCch------h---hhhccccccCCceeecCCCeeehh
Q 001511 726 PVFPQLKSAPRILP------L---RVADMFKVLVPTVFDKQGAQLLAV 764 (1064)
Q Consensus 726 ~~~~~~~~~~~~~p------~---Ra~~lCri~iP~l~s~e~g~lv~c 764 (1064)
..++|.+|.+.+.| + .+.+.|+...|++.. ..+|.++|
T Consensus 279 ~~~~g~~p~~~~~~~gc~f~~rc~~~~~~c~~~~p~~~~-~~~~~~~C 325 (331)
T PRK15079 279 QLLEGELPSPINPPSGCVFRTRCPIAGPECAKTRPVLEG-SFRHAVSC 325 (331)
T ss_pred ccCCCCCCCCcCCCCCCCCCCCCcchhhhhccCCCCcEe-CCCeEEEE
Confidence 23466555544433 2 478899998898865 66788888
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-46 Score=421.20 Aligned_cols=275 Identities=23% Similarity=0.306 Sum_probs=216.9
Q ss_pred CcEEEEeeEEEcCC---------CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----
Q 001511 443 NYIEFSGVKVVTPT---------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----- 508 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~---------~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----- 508 (1064)
..|+++||++.|+. ..++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 47999999999963 2479999999999999999999999999999999999999999999999964
Q ss_pred ----ccccccEEEEecCCC--C-CcccHHHHhcCCCCCC-CcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCc
Q 001511 509 ----SDLNKEIFYVPQRPY--T-AVGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDEL 579 (1064)
Q Consensus 509 ----~~lr~~i~~v~Q~p~--l-~~~Ti~eni~~~~~~~-~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~L 579 (1064)
..+|++|+||||+|. + +..|+.+|+.++...+ ........+++.++++.+|+. +..+++|+ +|
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~--------~L 155 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPH--------MF 155 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCc--------cC
Confidence 124678999999994 3 3469999987543221 111112346788999999996 57788885 89
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCceE
Q 001511 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEWR 654 (1064)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~ 654 (1064)
|||||||++|||||+.+|++||+||||++||+.++.++++++++ .|.|+|+||||++.+. .||+|++|.++
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G---- 231 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLG---- 231 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC----
Confidence 99999999999999999999999999999999999998887754 4899999999999986 69999999753
Q ss_pred EeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCCCC--CCCCCCCCCC
Q 001511 655 VHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHN--VPLPVFPQLK 732 (1064)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~--~~~~~~~~~~ 732 (1064)
+++|.++.++++.+ |.||||+.|+++.|..++. .....++|.+
T Consensus 232 ----------------------------------~ive~g~~~~~~~~-p~hpyt~~ll~~~p~~~~~~~~~~~~~~~~~ 276 (327)
T PRK11308 232 ----------------------------------RCVEKGTKEQIFNN-PRHPYTQALLSATPRLNPDDRRERIKLTGEL 276 (327)
T ss_pred ----------------------------------EEEEECCHHHHhcC-CCCHHHHHHHHhCCCcCcccccccccCCCCC
Confidence 12233444555554 7999999999999865321 1112356655
Q ss_pred CCCCCch---------hhhhccccccCCceeecCCCeeehhH
Q 001511 733 SAPRILP---------LRVADMFKVLVPTVFDKQGAQLLAVA 765 (1064)
Q Consensus 733 ~~~~~~p---------~Ra~~lCri~iP~l~s~e~g~lv~c~ 765 (1064)
|.+.+.| +.+.+.|+...|++... ++|.++|-
T Consensus 277 ~~~~~~~~gc~f~~rc~~~~~~c~~~~p~~~~~-~~~~~~c~ 317 (327)
T PRK11308 277 PSPLNPPPGCAFNARCPRAFGRCRQEQPQLRDY-DGRLVACF 317 (327)
T ss_pred CCCcCCCCCCCCCCCCcchhhccccCCCCcEec-CCeEEEee
Confidence 5544433 14788999888987766 57888883
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-46 Score=394.24 Aligned_cols=199 Identities=28% Similarity=0.365 Sum_probs=177.4
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccccccEEEEecCC
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRP 522 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~lr~~i~~v~Q~p 522 (1064)
.+++++|++.|.+ ..+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.. ..-..+++||||++
T Consensus 3 ~l~i~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 3 LLEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred eEEEEeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 5899999999964 789999999999999999999999999999999999999999999999965 34457899999999
Q ss_pred CCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001511 523 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1064)
Q Consensus 523 ~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1064)
.++. .|+.||+.++.........+..+++.++++.+||.++.+++|+ +|||||||||||||||+.+|++|+
T Consensus 82 ~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~--------qLSGGMrQRVaiARAL~~~P~lLL 153 (248)
T COG1116 82 ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH--------QLSGGMRQRVAIARALATRPKLLL 153 (248)
T ss_pred cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc--------ccChHHHHHHHHHHHHhcCCCEEE
Confidence 8765 6999999999876443334456789999999999999999996 999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001511 602 LDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1064)
Q Consensus 602 LDEPTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1064)
||||++|||..|+..+++.+ ++.++|+++||||++.+- -+|||++|.++.
T Consensus 154 lDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P 208 (248)
T COG1116 154 LDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRP 208 (248)
T ss_pred EcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCC
Confidence 99999999999998877654 456999999999998764 699999999864
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=416.07 Aligned_cols=274 Identities=20% Similarity=0.248 Sum_probs=212.6
Q ss_pred cEEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC----CCccEEEeCCCC------cc
Q 001511 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP----LVSGHIAKPGVG------SD 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~----p~~G~I~i~g~~------~~ 510 (1064)
.|+++||++.|+.+ ..+|+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ .+
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 58999999999653 469999999999999999999999999999999999998 489999999965 11
Q ss_pred ----ccccEEEEecCCC---CCcccHHHHhcCCCCCC-CcCCCCCHHHHHHHHHhcCChh---HHhcCCCCcccCCCCCc
Q 001511 511 ----LNKEIFYVPQRPY---TAVGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDEL 579 (1064)
Q Consensus 511 ----lr~~i~~v~Q~p~---l~~~Ti~eni~~~~~~~-~~~~~~~~~~i~~~l~~~~L~~---~~~~~p~~~~~~~g~~L 579 (1064)
.++.|+||||+|. .+..|+.+++..+...+ ........+++.++++.+|+.+ ..+++|+ +|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~--------~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPH--------QL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCch--------hC
Confidence 1247999999995 23458887776543211 1111234567889999999964 5677774 89
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCCCceE
Q 001511 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGEGEWR 654 (1064)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~g~~~ 654 (1064)
||||||||+|||||+.+|++||+||||++||+.++.++++.+++ .|.|+|+||||++.+ +.+|+|++|.++. .
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~--i 232 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQ--V 232 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE--E
Confidence 99999999999999999999999999999999999998887654 489999999999988 4799999998631 2
Q ss_pred EeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCCCC-CCCCCCCCCCC
Q 001511 655 VHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHN-VPLPVFPQLKS 733 (1064)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~-~~~~~~~~~~~ 733 (1064)
+|.+..++++. .|.||||++|+++.|...+. ..+..++|.+|
T Consensus 233 ------------------------------------ve~g~~~~~~~-~p~hpyt~~ll~~~~~~~~~~~~~~~~~g~~~ 275 (326)
T PRK11022 233 ------------------------------------VETGKAHDIFR-APRHPYTQALLRALPEFAQDKARLASLPGVVP 275 (326)
T ss_pred ------------------------------------EEECCHHHHhh-CCCChHHHHHHHhCccccccccccccCCCCCC
Confidence 22234445555 48999999999999875422 22334566655
Q ss_pred CCCCch---------hhhhccccccCCceeecCCCeeehhH
Q 001511 734 APRILP---------LRVADMFKVLVPTVFDKQGAQLLAVA 765 (1064)
Q Consensus 734 ~~~~~p---------~Ra~~lCri~iP~l~s~e~g~lv~c~ 765 (1064)
...+.| +.+.+.|+...|++...+ +|.++|-
T Consensus 276 ~~~~~~~gc~~~~rc~~~~~~c~~~~p~~~~~~-~~~~~c~ 315 (326)
T PRK11022 276 GKYDRPNGCLLNPRCPYATDRCRAEEPALNMLA-GRQSKCH 315 (326)
T ss_pred CCcCCCCCCCCCCCCcchhhccccCCCCcEeeC-CEEEEee
Confidence 544333 248889999989887664 7888883
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-46 Score=398.26 Aligned_cols=234 Identities=27% Similarity=0.423 Sum_probs=196.3
Q ss_pred CcEEEEeeEEEcCCC--------CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccccc
Q 001511 443 NYIEFSGVKVVTPTG--------NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNK 513 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~--------~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~lr~ 513 (1064)
..++++|++++|+.+ ..+++||||+|++||+++|||+||||||||.|+|+||++|++|+|.++|.+ ..+.
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~- 81 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS- 81 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence 368999999998643 279999999999999999999999999999999999999999999999964 1111
Q ss_pred cEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 514 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 514 ~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
.....+++.++|+.+|+. +++.++|+ +|||||+||++||||
T Consensus 82 ------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPh--------elSGGQrQRi~IARA 123 (268)
T COG4608 82 ------------------------------KEERRERVLELLEKVGLPEEFLYRYPH--------ELSGGQRQRIGIARA 123 (268)
T ss_pred ------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCc--------ccCchhhhhHHHHHH
Confidence 113456799999999996 58999997 899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCCCceEEeecCCCccccccc
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTKS 668 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~g~~~~~~~~~~~~~~~~~ 668 (1064)
|+.+|+++++|||||+||...+.++.+++++ .|.|+++||||++.+++.
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i--------------------------- 176 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI--------------------------- 176 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh---------------------------
Confidence 9999999999999999999999998887653 499999999999999863
Q ss_pred ccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCCCCCC---CCCCCCCCCCCCCchh-----
Q 001511 669 GINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVP---LPVFPQLKSAPRILPL----- 740 (1064)
Q Consensus 669 ~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~~~---~~~~~~~~~~~~~~p~----- 740 (1064)
+||++ +||.|+++|.+++++++.+ |.||||++|++++|..++..+ .....|..|++.++|.
T Consensus 177 ---------sdri~-VMy~G~iVE~g~~~~~~~~-p~HpYTk~Ll~a~p~~~p~~~~~~~~~~~ge~p~~~~~p~gC~f~ 245 (268)
T COG4608 177 ---------SDRIA-VMYLGKIVEIGPTEEVFSN-PLHPYTKALLSAVPVPDPRLRRKRRIPLEGEVPSPINPPSGCRFH 245 (268)
T ss_pred ---------cccEE-EEecCceeEecCHHHHhhC-CCCHHHHHHHHhCCccchhhhhhhhhhhccCCCCCCcCCcCCccc
Confidence 24444 7778889999999999985 899999999999998665322 2234566777666552
Q ss_pred ----hhhccccccCCce
Q 001511 741 ----RVADMFKVLVPTV 753 (1064)
Q Consensus 741 ----Ra~~lCri~iP~l 753 (1064)
.+++.|+...|.+
T Consensus 246 ~RCp~a~~~c~~~~p~~ 262 (268)
T COG4608 246 PRCPYAMEICRKEEPEL 262 (268)
T ss_pred CCcchhhhhhcccCCch
Confidence 4788899998876
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-45 Score=413.52 Aligned_cols=276 Identities=23% Similarity=0.301 Sum_probs=214.1
Q ss_pred CCcEEEEeeEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC---ccEEEeCCCC------c
Q 001511 442 ANYIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVG------S 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~---~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~---~G~I~i~g~~------~ 509 (1064)
...++++||++.|+. ..++|+||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+ .
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 357999999999953 247999999999999999999999999999999999999996 9999999964 1
Q ss_pred c---cc-ccEEEEecCCC--C-CcccHHHHhcCCCCCCC-cCCCCCHHHHHHHHHhcCChh---HHhcCCCCcccCCCCC
Q 001511 510 D---LN-KEIFYVPQRPY--T-AVGTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDE 578 (1064)
Q Consensus 510 ~---lr-~~i~~v~Q~p~--l-~~~Ti~eni~~~~~~~~-~~~~~~~~~i~~~l~~~~L~~---~~~~~p~~~~~~~g~~ 578 (1064)
+ +| +.|+||||+|. + +..|+.+|+.++...+. .......+++.++++.+++.+ ..+++|+ +
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~--------~ 161 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPH--------E 161 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcc--------c
Confidence 1 23 47999999984 3 44689888875432221 111122356788999999964 3466774 8
Q ss_pred cChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCce
Q 001511 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEW 653 (1064)
Q Consensus 579 LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~ 653 (1064)
||||||||++|||||+.+|++||+||||++||+.++..+.+.+++ .|.|+|+||||++.+. .+|+|++|.++
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G--- 238 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAG--- 238 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECC---
Confidence 999999999999999999999999999999999999998887653 3899999999999986 69999999753
Q ss_pred EEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCCCC-CCCCCCCCCC
Q 001511 654 RVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHN-VPLPVFPQLK 732 (1064)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~-~~~~~~~~~~ 732 (1064)
+++|.+..++++++ |.||||++|+++.|..++. ..+..++|.+
T Consensus 239 -----------------------------------~ive~g~~~~i~~~-p~~pyt~~l~~~~~~~~~~~~~~~~~~~~~ 282 (330)
T PRK09473 239 -----------------------------------RTMEYGNARDVFYQ-PSHPYSIGLLNAVPRLDAEGESLLTIPGNP 282 (330)
T ss_pred -----------------------------------EEEEECCHHHHHhC-CCCHHHHHHHHhCCCccccccccccCCCCC
Confidence 22233455566664 7999999999999864321 2233455655
Q ss_pred CCCCCch---------hhhhccccccCCceeecCCCeeehhH
Q 001511 733 SAPRILP---------LRVADMFKVLVPTVFDKQGAQLLAVA 765 (1064)
Q Consensus 733 ~~~~~~p---------~Ra~~lCri~iP~l~s~e~g~lv~c~ 765 (1064)
|.+...| +++.+.| ...|++...+++|.++|-
T Consensus 283 ~~~~~~~~gc~f~~rc~~~~~~c-~~~p~~~~~~~~~~v~c~ 323 (330)
T PRK09473 283 PNLLRLPKGCPFQPRCPHAMEIC-SSAPPLEEFGPGRLRACF 323 (330)
T ss_pred CCccCCCCCCCCCCCCchhhhhh-cCCCCceEcCCCeEEEee
Confidence 5444433 2478889 677888888788999884
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=427.86 Aligned_cols=233 Identities=30% Similarity=0.441 Sum_probs=200.3
Q ss_pred CCCcEEEEeeEEEcCC------C----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC--
Q 001511 441 EANYIEFSGVKVVTPT------G----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-- 508 (1064)
Q Consensus 441 ~~~~i~~~nvs~~y~~------~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-- 508 (1064)
..+.++++||++.|.. + ..+++||||++++||++||||+||||||||.|+|+|+.+|++|+|.++|.+
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 3567899999999973 1 368999999999999999999999999999999999999999999999964
Q ss_pred ------ccccccEEEEecCCCC---CcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCC
Q 001511 509 ------SDLNKEIFYVPQRPYT---AVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGD 577 (1064)
Q Consensus 509 ------~~lr~~i~~v~Q~p~l---~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~-~~~~~p~~~~~~~g~ 577 (1064)
.+.|+++.+|||||+. +..||+++|..+...+... .....+++.++++.++|.. +.+++|+
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~-------- 428 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPH-------- 428 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCch--------
Confidence 2356899999999973 5679999999887644322 1234457899999999975 8999996
Q ss_pred CcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHh-cCEEEEEeCCCc
Q 001511 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAF-HDVVLSLDGEGE 652 (1064)
Q Consensus 578 ~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~-~D~Il~l~~~g~ 652 (1064)
+||||||||+||||||+.+|++||+|||||+||+.++.++.+++++ .|.|+|+||||+..++. ||+|.+|++
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~--- 505 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYD--- 505 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEEC---
Confidence 8999999999999999999999999999999999999998887653 59999999999999974 888887764
Q ss_pred eEEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCC
Q 001511 653 WRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIAD 720 (1064)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~ 720 (1064)
|+++|.++++++|.+ |.||||+.|++++|..+
T Consensus 506 -----------------------------------G~iVE~G~~~~v~~~-p~h~Ytr~L~~avp~~~ 537 (539)
T COG1123 506 -----------------------------------GRIVEEGPTEKVFEN-PQHPYTRKLLAAVPKPD 537 (539)
T ss_pred -----------------------------------CeEEEeCCHHHHhcC-CCChHHHHHHHhccccC
Confidence 456677777777775 89999999999999754
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=378.56 Aligned_cols=228 Identities=22% Similarity=0.260 Sum_probs=194.9
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCc-----cEEEeCCCC--------c
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS-----GHIAKPGVG--------S 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~-----G~I~i~g~~--------~ 509 (1064)
..++++||+++|. ++.+|+|||++|++++++|++||||||||||+|++.++.+..+ |+|.++|.+ .
T Consensus 6 ~~~~~~~l~~yYg-~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 6 PAIEVRDLNLYYG-DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred ceeEecceeEEEC-chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 4689999999994 6789999999999999999999999999999999999988764 999999975 2
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHH-hcCCCCcccCCCCCcChHHHHHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL-DRYPPEKEINWGDELSLGEQQRLG 588 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~-~~~p~~~~~~~g~~LSGGqrQRla 588 (1064)
++|++||+|||.|.-|..||+||++|+.+.++..++.-++.+++.|+.+.|++-. +++. ..+..||||||||++
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~-----~sa~~LSGGQQQRLc 159 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLH-----KSALGLSGGQQQRLC 159 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhh-----CCccCCChhHHHHHH
Confidence 5799999999999999999999999998776554445567788899999997543 3321 123479999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCCCceEEeecCCCccccc
Q 001511 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVT 666 (1064)
Q Consensus 589 IARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~g~~~~~~~~~~~~~~~ 666 (1064)
|||||+.+|++|+||||||||||.+..+|.+++.+ ..-|+|+|||++.-+...
T Consensus 160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRv------------------------- 214 (253)
T COG1117 160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARV------------------------- 214 (253)
T ss_pred HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHH-------------------------
Confidence 99999999999999999999999999988888765 378999999999866543
Q ss_pred ccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHh
Q 001511 667 KSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIA 714 (1064)
Q Consensus 667 ~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~ 714 (1064)
+|..+ -+|.|+++|.++++++|.+ |.|-.|+.-+.
T Consensus 215 -----------SD~ta-Ff~~G~LvE~g~T~~iF~~-P~~~~TedYis 249 (253)
T COG1117 215 -----------SDYTA-FFYLGELVEFGPTDKIFTN-PKHKRTEDYIS 249 (253)
T ss_pred -----------hHhhh-hhcccEEEEEcCHHhhhcC-ccHHHHHHHhc
Confidence 24444 7888999999999999987 79998887654
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=382.58 Aligned_cols=199 Identities=31% Similarity=0.430 Sum_probs=172.4
Q ss_pred EEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---------ccc-
Q 001511 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDL- 511 (1064)
Q Consensus 445 i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~l- 511 (1064)
++++||++.|..+ ..+|+++||+|++||+++|+||||||||||+++|.|+..|++|.|.++|.+ ..+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 6789999988654 379999999999999999999999999999999999999999999999964 122
Q ss_pred cccEEEEecCCCC-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHh-cCCCCcccCCCCCcChHHHHHHHH
Q 001511 512 NKEIFYVPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLD-RYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 512 r~~i~~v~Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~-~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
|++||||||+..+ +..|+.|||..|............+.+.++++.+|+.+... ++|. +|||||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~--------eLSGGqqQRVAI 153 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPS--------ELSGGQQQRVAI 153 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCch--------hcCHHHHHHHHH
Confidence 5789999999876 46799999997754332222134567788999999997776 7784 899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGEG 651 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~g 651 (1064)
||||+++|+++++||||++||.++.+.+++++++ .|+|+|+||||+..+..|||++.+.++.
T Consensus 154 ARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 154 ARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGK 219 (226)
T ss_pred HHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCe
Confidence 9999999999999999999999999999888764 4899999999999999999999998764
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=408.13 Aligned_cols=273 Identities=18% Similarity=0.240 Sum_probs=210.2
Q ss_pred cEEEEeeEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC----CCccEEEeCCCC------cc
Q 001511 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP----LVSGHIAKPGVG------SD 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~---~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~----p~~G~I~i~g~~------~~ 510 (1064)
.|+++||++.|+. ...+++||||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+ .+
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999953 3479999999999999999999999999999999999986 589999999964 11
Q ss_pred c----cccEEEEecCCCC---CcccHHHHhcCCCCCC---Cc--CC-CCCHHHHHHHHHhcCChh---HHhcCCCCcccC
Q 001511 511 L----NKEIFYVPQRPYT---AVGTLRDQLIYPLTSD---QE--VE-PLTHGGMVELLKNVDLEY---LLDRYPPEKEIN 574 (1064)
Q Consensus 511 l----r~~i~~v~Q~p~l---~~~Ti~eni~~~~~~~---~~--~~-~~~~~~i~~~l~~~~L~~---~~~~~p~~~~~~ 574 (1064)
+ ++.|+||||+|.. +..|+.+|+.++.... .. .. ....+++.++++.+||.+ ..+++|+
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~----- 157 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPY----- 157 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCch-----
Confidence 1 3579999999963 3469999987532110 00 00 112457889999999974 4577774
Q ss_pred CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001511 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1064)
Q Consensus 575 ~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1064)
+|||||||||+|||||+.+|++|||||||++||+.++.++.+.+++ .|.|+|+||||++.+. .+|+|++|++
T Consensus 158 ---~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 158 ---ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred ---hCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999998887764 4899999999999985 6999999976
Q ss_pred CCceEEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCCC----CCCC
Q 001511 650 EGEWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADH----NVPL 725 (1064)
Q Consensus 650 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~----~~~~ 725 (1064)
+. . +|.+..++.+. .|.||||++|+++.|..+. ..+.
T Consensus 235 G~--i------------------------------------ve~g~~~~i~~-~p~~~y~~~ll~~~~~~~~~~~~~~~~ 275 (330)
T PRK15093 235 GQ--T------------------------------------VETAPSKELVT-TPHHPYTQALIRAIPDFGSAMPHKSRL 275 (330)
T ss_pred CE--E------------------------------------EEECCHHHHHh-CCCCHHHHHHHHhCCcccccccccccc
Confidence 41 2 22233334455 4799999999999986432 1122
Q ss_pred CCCCCCCCCCCCch---------hhhhccccccCCceeecCCCeeehhH
Q 001511 726 PVFPQLKSAPRILP---------LRVADMFKVLVPTVFDKQGAQLLAVA 765 (1064)
Q Consensus 726 ~~~~~~~~~~~~~p---------~Ra~~lCri~iP~l~s~e~g~lv~c~ 765 (1064)
..++|.+|.+...+ +.+.+.|... |++... ++|.++|-
T Consensus 276 ~~~~~~~~~~~~~~~~c~f~~rc~~~~~~c~~~-p~~~~~-~~~~~~c~ 322 (330)
T PRK15093 276 NTLPGAIPLLEHLPIGCRLGPRCPYAQRECIET-PRLTGA-KNHLYACH 322 (330)
T ss_pred ccCCCCCCCcccCCCCCCCCCCCcchhhhhhcC-CCCEec-CCeEEEee
Confidence 34566655544433 2478899865 887666 47888884
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-45 Score=381.40 Aligned_cols=198 Identities=27% Similarity=0.366 Sum_probs=176.3
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
+|+|+||++.|. ++.+++|+||+|++||++.++|||||||||++|+|.||++|++|+|.++|.+ .++|++|||
T Consensus 1 MI~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 1 MIEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred CceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 479999999995 7789999999999999999999999999999999999999999999999975 368999999
Q ss_pred EecCCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh--hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 518 VPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 518 v~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~--~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
|-|..-+| +.||.|||+.-....+..++..++++.|+++.+||+ ++.+|||+ +|||||||||.+||||+
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~--------eLSGGQQQRVGv~RALA 151 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH--------ELSGGQQQRVGVARALA 151 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch--------hcCcchhhHHHHHHHHh
Confidence 99998876 579999999754433333445667899999999996 69999996 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~----~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
.+|+++++|||++||||.++.++++.+. +.|+|+|+||||+..+ +.+|||.+|+++
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G 212 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAG 212 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCC
Confidence 9999999999999999999998887654 4599999999999875 679999999864
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=363.91 Aligned_cols=199 Identities=26% Similarity=0.353 Sum_probs=180.4
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---------cccccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLNKE 514 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~lr~~ 514 (1064)
+|+|+||++.|++++++|+||||+|++||++-|+||||||||||+|+|.+...|+.|+|.++|.+ .-+|++
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 48999999999999889999999999999999999999999999999999999999999999976 136899
Q ss_pred EEEEecCCCC-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 515 IFYVPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 515 i~~v~Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
||+||||.-+ ...|+.||++++....+..+.+..+++.++|+.+||.+..+.+|. +||||||||++||||+
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~--------~LSGGEQQRvaIARAi 152 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS--------QLSGGEQQRVAIARAI 152 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc--------ccCchHHHHHHHHHHH
Confidence 9999999865 567999999999876665555667889999999999999999994 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhc-CEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFH-DVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~-D~Il~l~~~ 650 (1064)
+.+|++||.||||.+|||+...++++++.+ .|+||++.|||.+++... .+++.++++
T Consensus 153 V~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~G 213 (223)
T COG2884 153 VNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDG 213 (223)
T ss_pred ccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCC
Confidence 999999999999999999999999888765 599999999999999754 567777653
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=411.97 Aligned_cols=233 Identities=30% Similarity=0.379 Sum_probs=197.9
Q ss_pred CcEEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC----ccEEEeCCCC------c
Q 001511 443 NYIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV----SGHIAKPGVG------S 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~----~G~I~i~g~~------~ 509 (1064)
+.++++|+++.|... .++++||||+|++||++||||+|||||||+.++|+|+.++. +|+|.++|.+ .
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 479999999988642 36999999999999999999999999999999999999987 8999999975 1
Q ss_pred ---c-ccccEEEEecCCC---CCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhHHhc--CCCCcccCCCCCc
Q 001511 510 ---D-LNKEIFYVPQRPY---TAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDR--YPPEKEINWGDEL 579 (1064)
Q Consensus 510 ---~-lr~~i~~v~Q~p~---l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~~~~--~p~~~~~~~g~~L 579 (1064)
. ..+.|+||||+|. .+..||.++|......+... ..+..+++.++|+.+|+++-..+ ||| +|
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPh--------eL 155 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPH--------QL 155 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCc--------cc
Confidence 1 2378999999996 34579999998754443321 23456788999999999865554 997 89
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCceE
Q 001511 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEWR 654 (1064)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~ 654 (1064)
|||||||+.||+||+++|++||+||||++||+.++.+|++++++ .|+++|+||||++.+. .||+|+||.+
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~----- 230 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYK----- 230 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEEC-----
Confidence 99999999999999999999999999999999999999887754 5999999999999886 5899887764
Q ss_pred EeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCCCC
Q 001511 655 VHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHN 722 (1064)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~ 722 (1064)
|+++|.+++++++++ |+||||+.|+++.|...+.
T Consensus 231 ---------------------------------G~iVE~G~~~~i~~~-p~hpYT~~Ll~a~p~~~~~ 264 (539)
T COG1123 231 ---------------------------------GEIVETGPTEEILSN-PQHPYTRGLLAAVPRLGDE 264 (539)
T ss_pred ---------------------------------CEEEEecCHHHHHhc-cCCcccHHHHhhCCCcccc
Confidence 456777888899886 7999999999999986443
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=367.47 Aligned_cols=200 Identities=28% Similarity=0.353 Sum_probs=174.3
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---------cccc
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLN 512 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~lr 512 (1064)
...|++++|++.| +++.+++||||+|++||+++|+||||||||||+|+|.|+++|++|+|.++|.+ .++|
T Consensus 6 ~~~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 6 EPLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred cceEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 4579999999999 56889999999999999999999999999999999999999999999999976 2468
Q ss_pred ccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 513 KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 513 ~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~~~-~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
+++|++||.--+|. .||.||+.||...+...+ ...++-+..-|+.|||..- .+.+| .+|||||++|+||
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P--------sELSGGM~KRvaL 156 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP--------SELSGGMRKRVAL 156 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc--------hhhcchHHHHHHH
Confidence 99999999999986 599999999987653322 2233445567899999866 88999 4899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~----~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++.||+++++|||||||||.+...+-++++ +.|.|+|+||||+.++. .||+++++.++
T Consensus 157 ARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~g 222 (263)
T COG1127 157 ARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADG 222 (263)
T ss_pred HHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCC
Confidence 999999999999999999999998877665544 35999999999999875 68999999865
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=377.91 Aligned_cols=198 Identities=28% Similarity=0.379 Sum_probs=174.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
.++++||++.|+ ++++++|+||++++||+++|+||||||||||+|+|+|+.+|.+|+|.++|.+ +++.++++|
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 489999999996 7899999999999999999999999999999999999999999999999976 356789999
Q ss_pred EecCCCCC-cccHHHHhcCCCCCCCc----CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 518 VPQRPYTA-VGTLRDQLIYPLTSDQE----VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 518 v~Q~p~l~-~~Ti~eni~~~~~~~~~----~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
|||++..+ ..||+|-+.++...+.. ..+.+.+.+.++++.+|+.++.++.- .+||||||||+.||||
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~--------~~LSGGerQrv~iArA 152 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV--------DELSGGERQRVLIARA 152 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc--------cccChhHHHHHHHHHH
Confidence 99998654 56999999988654311 12234446888999999999999865 3899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|+++|++|+||||||+||...+.++++++++ .|+|+|++.||++.+ ++||++++|+++
T Consensus 153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G 215 (258)
T COG1120 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDG 215 (258)
T ss_pred HhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999887754 489999999999976 689999999975
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-43 Score=384.75 Aligned_cols=229 Identities=28% Similarity=0.379 Sum_probs=199.3
Q ss_pred CCcEEEEeeEEEcCCC----------CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---
Q 001511 442 ANYIEFSGVKVVTPTG----------NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~----------~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--- 508 (1064)
...++.+||.+.|+-. ..++++|||++++||++||||+||||||||.++|++|++++ |+|.++|.+
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 4578999999988631 25999999999999999999999999999999999999877 999999975
Q ss_pred ------ccccccEEEEecCCC---CCcccHHHHhcCCCCCCCc--CCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCC
Q 001511 509 ------SDLNKEIFYVPQRPY---TAVGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWG 576 (1064)
Q Consensus 509 ------~~lr~~i~~v~Q~p~---l~~~Ti~eni~~~~~~~~~--~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g 576 (1064)
.-+|+++.+|||||| .|..||.+.|..|...++. ...+.++++.++|+.+|++ .-.++||+
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPh------- 425 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPH------- 425 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCc-------
Confidence 236899999999998 3567999999998776542 2335678899999999997 56899997
Q ss_pred CCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001511 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1064)
++|||||||+|||||++.+|++++||||||+||...+.++.+++++ .|.++++||||+..++ .||+++||.++
T Consensus 426 -EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~G- 503 (534)
T COG4172 426 -EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG- 503 (534)
T ss_pred -ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCC-
Confidence 8999999999999999999999999999999999999998887754 5999999999999997 59999999753
Q ss_pred ceEEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCC
Q 001511 652 EWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPI 718 (1064)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~ 718 (1064)
++||.++++++|.+ |+|+||++|+++.+.
T Consensus 504 -------------------------------------kiVE~G~~~~if~~-P~~~YT~~L~~aa~~ 532 (534)
T COG4172 504 -------------------------------------KIVEQGPTEAVFAN-PQHEYTRALLAAAFD 532 (534)
T ss_pred -------------------------------------EEeeeCCHHHHhcC-CCcHHHHHHHHhhcc
Confidence 45667888888886 799999999998774
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=372.38 Aligned_cols=199 Identities=28% Similarity=0.401 Sum_probs=172.7
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccc--cccEEEEe
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDL--NKEIFYVP 519 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~l--r~~i~~v~ 519 (1064)
..|+++|++++|.++ ++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.|.+ ... +.+|||||
T Consensus 3 ~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 3 PMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred cEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 469999999999755 79999999999999999999999999999999999999999999999865 222 36899999
Q ss_pred cCC---CCCcccHHHHhcCCCCCCC----cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 520 QRP---YTAVGTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 520 Q~p---~l~~~Ti~eni~~~~~~~~----~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
|.. +-|+.||+|-+..+..... ...+.+.+++.++|+++|+.++.++.- .+|||||+|||.||||
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i--------~~LSGGQ~QRV~lARA 153 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQI--------GELSGGQKQRVLLARA 153 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcc--------cccCcHHHHHHHHHHH
Confidence 965 4577899999988743321 112234688999999999999998865 4899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|+.+|++|+|||||+|+|+.++..+++++++ .|+||++||||++.+. ++|+|+.++++
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~ 215 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRH 215 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCe
Confidence 9999999999999999999999998887754 4999999999999875 79999999874
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-43 Score=396.84 Aligned_cols=199 Identities=27% Similarity=0.344 Sum_probs=173.2
Q ss_pred cEEEEeeEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------c---cc
Q 001511 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------S---DL 511 (1064)
Q Consensus 444 ~i~~~nvs~~y~~---~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~---~l 511 (1064)
+|+++||++.|++ ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . ..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 4789999999963 2479999999999999999999999999999999999999999999999964 1 23
Q ss_pred cccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 512 NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 512 r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
|++|+|+||++.++. .|+.||+.++...........++++.++++.+|+.++.+++|. +|||||||||+||
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~--------~LSgGqkQRV~IA 152 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPS--------NLSGGQKQRVAIA 152 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh--------hCCHHHHHHHHHH
Confidence 678999999998874 7999999987542221112234678899999999999999884 8999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||+.+|++||||||||+||+.++..+++.+++ .|.|+|+|||+++.+. .||+|++|+++
T Consensus 153 RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G 217 (343)
T TIGR02314 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNG 217 (343)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999998887765 3899999999999985 69999999864
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=390.48 Aligned_cols=199 Identities=26% Similarity=0.379 Sum_probs=175.9
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYV 518 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v 518 (1064)
..++++||++.|. +..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|.+ .--++.||+|
T Consensus 4 ~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 4 PALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred ceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence 4699999999996 7899999999999999999999999999999999999999999999999976 2236799999
Q ss_pred ecCCCCC-cccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 519 PQRPYTA-VGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 519 ~Q~p~l~-~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
||+.-+| ..||+|||+||+....... .+.++++.++++.++++++.+++|+ +|||||||||||||||+.+
T Consensus 83 FQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~--------qLSGGQqQRVALARAL~~~ 154 (352)
T COG3842 83 FQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH--------QLSGGQQQRVALARALVPE 154 (352)
T ss_pred ecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh--------hhChHHHHHHHHHHHhhcC
Confidence 9999876 4799999999987332222 2345689999999999999999996 9999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|++|+||||.|+||...+.+++..+ ++.|.|.|+||||-+.+ ..+|||.+|+++
T Consensus 155 P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G 213 (352)
T COG3842 155 PKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDG 213 (352)
T ss_pred cchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCC
Confidence 9999999999999998887766544 45699999999998865 579999999875
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=385.55 Aligned_cols=197 Identities=26% Similarity=0.391 Sum_probs=175.5
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-cc---ccccEEEEe
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SD---LNKEIFYVP 519 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~---lr~~i~~v~ 519 (1064)
.|+++||++.|.+.. +++|+||+|++||+++|+||||||||||||+|+||.+|++|+|.++|.+ .+ ..++|+|||
T Consensus 3 ~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred EEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 589999999996433 9999999999999999999999999999999999999999999999965 22 357899999
Q ss_pred cCCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|+.-++ .+||+|||+||....+..+.+.++++.++++.++++++++++|. +|||||||||||||||+++|+
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~--------~LSGGQrQRVAlaRAlVr~P~ 153 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL--------QLSGGQRQRVALARALVRKPK 153 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc--------cCChhhHHHHHHHHHHhcCCC
Confidence 999775 57999999999887665555678899999999999999999994 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHH-HhcCEEEEEeC
Q 001511 599 FAILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALV-AFHDVVLSLDG 649 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i-~~~D~Il~l~~ 649 (1064)
+++||||+|+||...+..+...+ ++.|.|+|.||||...+ ..+|+|.+|++
T Consensus 154 v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~ 209 (338)
T COG3839 154 VFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMND 209 (338)
T ss_pred EEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeC
Confidence 99999999999998877765443 44699999999998776 47999999994
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=360.76 Aligned_cols=199 Identities=23% Similarity=0.352 Sum_probs=176.1
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---------cccccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLNKE 514 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~lr~~ 514 (1064)
+|+++||++.||+++.+|+||||+|++||+++|+||||||||||+|+|.|+++|++|+|.++|.+ .++|++
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999964 356889
Q ss_pred EEEEecCCCCC-cccHHHHhcCCCCCCCc--------CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHH
Q 001511 515 IFYVPQRPYTA-VGTLRDQLIYPLTSDQE--------VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 515 i~~v~Q~p~l~-~~Ti~eni~~~~~~~~~--------~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
|||+||++.+. ..|+.+|+..+...+.. ..+++..++.++|+++|+.+..-... ++|||||||
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--------~~LSGGQQQ 154 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--------STLSGGQQQ 154 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh--------ccCCcchhH
Confidence 99999999875 46999999877544321 22345567888999999988765543 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||+|||||+.+|++++.|||+++|||.+.+++++.+++ .|.|+|+.-|++++++ +||||+-|+++
T Consensus 155 RVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G 224 (258)
T COG3638 155 RVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAG 224 (258)
T ss_pred HHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCC
Confidence 99999999999999999999999999999999988864 4999999999999885 89999999864
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=369.56 Aligned_cols=200 Identities=30% Similarity=0.438 Sum_probs=181.6
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i 515 (1064)
..++++|++++|+++.++|+|+||+|++||.++|+|+||||||||+++++|+++|++|+|.++|.+ ..+|+++
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 368999999999877789999999999999999999999999999999999999999999999964 2468999
Q ss_pred EEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
|||||+| .++..||.|.++|+..+.+...++.++++.++++.+|+.++.++.|+ +||||||||||||.+|
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~--------~LSGGqkqRvaIA~vL 153 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPF--------NLSGGQKQRVAIAGVL 153 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCcc--------ccCCcceeeHHhhHHH
Confidence 9999999 57889999999999876655444466789999999999999999886 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+|++||||||||+||+...+.+.+.+++ . |+|+|++|||++.+. .||++++|+++
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G 215 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDG 215 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECC
Confidence 999999999999999999999999887765 2 689999999999886 59999999975
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=415.70 Aligned_cols=271 Identities=24% Similarity=0.290 Sum_probs=212.6
Q ss_pred CcEEEEeeEEEcCC----------CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----
Q 001511 443 NYIEFSGVKVVTPT----------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---- 508 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~----------~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---- 508 (1064)
+.++++||++.|+. +.++|+||||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 57999999999962 2479999999999999999999999999999999999999999999999953
Q ss_pred -----ccccccEEEEecCCC--C-CcccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCC
Q 001511 509 -----SDLNKEIFYVPQRPY--T-AVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDE 578 (1064)
Q Consensus 509 -----~~lr~~i~~v~Q~p~--l-~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~ 578 (1064)
..++++|+||||+|+ + +..|+.+|+.++...... ......+++.++++.+|+. +..+++|. +
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~--------~ 463 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPH--------E 463 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcc--------c
Confidence 124568999999984 4 456999999865321111 0112345688899999995 67788884 8
Q ss_pred cChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCce
Q 001511 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGEW 653 (1064)
Q Consensus 579 LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~ 653 (1064)
|||||||||+|||||+.+|++|||||||++||+.++.++.+++++ .|.|+|+||||++.+. .||+|++|+++.
T Consensus 464 LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~-- 541 (623)
T PRK10261 464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ-- 541 (623)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE--
Confidence 999999999999999999999999999999999999999888743 4899999999999885 699999998642
Q ss_pred EEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCCCC---CCCCCCCC
Q 001511 654 RVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHN---VPLPVFPQ 730 (1064)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~---~~~~~~~~ 730 (1064)
.+ +.+..++++. .|.||||++|+++.|..++. .....++|
T Consensus 542 iv------------------------------------~~g~~~~i~~-~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 584 (623)
T PRK10261 542 IV------------------------------------EIGPRRAVFE-NPQHPYTRKLMAAVPVADPSRQRPQRVLLSD 584 (623)
T ss_pred EE------------------------------------EecCHHHHhc-CCCCHHHHHHHhhCCCCCcccccccccccCC
Confidence 11 1233334444 47999999999999975542 12234577
Q ss_pred CCCCCCCchhhhhccccccCCceeecCCCeeehhH
Q 001511 731 LKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVA 765 (1064)
Q Consensus 731 ~~~~~~~~p~Ra~~lCri~iP~l~s~e~g~lv~c~ 765 (1064)
.+|++...... +...|++.+.+.+|.+.|-
T Consensus 585 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 614 (623)
T PRK10261 585 DLPSNIHLRGE-----EVAAVSLQCVGPGHYVAQP 614 (623)
T ss_pred CCCCCcCCCCC-----CCCCCcceecCCCcEEeec
Confidence 77766433221 4567888888888888543
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=386.41 Aligned_cols=199 Identities=25% Similarity=0.386 Sum_probs=173.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEe
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~ 519 (1064)
.|+++||++.|++++++|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ ...++.|+|||
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 58999999999555789999999999999999999999999999999999999999999999964 12346899999
Q ss_pred cCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|++.+|. .|++|||.|+............+++.++++.++++++.+++|. +|||||||||+|||||+.+|+
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~LSgGq~QRvalARAL~~~P~ 154 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPR--------ELSGGQRQRVAMGRAIVREPA 154 (356)
T ss_pred CCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChh--------hCCHHHHHHHHHHHHHhcCCC
Confidence 9998875 6999999998643221112234678899999999999999985 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+||||||||+||+.+++.+.+.+++ .|.|+|+|||+++.+ ..+|+|++|+++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G 211 (356)
T PRK11650 155 VFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGG 211 (356)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999988776653 489999999999876 579999999864
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=360.66 Aligned_cols=199 Identities=26% Similarity=0.372 Sum_probs=171.0
Q ss_pred cEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--------cccc
Q 001511 444 YIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLNK 513 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~lr~ 513 (1064)
+++++|+++.|+++ +++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . .+++
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 37899999999654 479999999999999999999999999999999999999999999999964 1 1457
Q ss_pred cEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 514 EIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 514 ~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
.++|+||++.++. .|+.||+.++...........++++.++++.+++.++.++.|. +||||||||++||||
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrv~lara 152 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPM--------QLSGGEQQRVAIARA 152 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChh--------hCCHHHHHHHHHHHH
Confidence 8999999998775 6999999875322111111234678889999999988888774 899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|+.+|+++||||||++||+.+++.+.+.+++ .|.|+|+|||+++.+. .||++++|+++
T Consensus 153 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G 214 (216)
T TIGR00960 153 IVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRG 214 (216)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999887764 3899999999999886 69999999864
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=372.17 Aligned_cols=231 Identities=26% Similarity=0.385 Sum_probs=195.9
Q ss_pred CCcEEEEeeEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC-----
Q 001511 442 ANYIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG----- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~---~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~----- 508 (1064)
.+.++++|+++.|.. ...++++|||+|++||++||||+||||||-..+.++||++. -+|+|.++|.+
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 357899999998852 35799999999999999999999999999999999999975 47999999976
Q ss_pred -cc---cc-ccEEEEecCCCC---CcccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCCh---hHHhcCCCCcccCCC
Q 001511 509 -SD---LN-KEIFYVPQRPYT---AVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLE---YLLDRYPPEKEINWG 576 (1064)
Q Consensus 509 -~~---lr-~~i~~v~Q~p~l---~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~---~~~~~~p~~~~~~~g 576 (1064)
.. +| .+|+++||+|.. |..||..+|..+...+.. ......+++.++|+.+|+. ..++.|||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPH------- 156 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPH------- 156 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCc-------
Confidence 12 33 589999999974 446999999877654432 3345678899999999996 45788997
Q ss_pred CCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001511 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1064)
+|||||||||.||.||+.+|++||.||||.|||+..+.+|++++++ .|+.+++||||++.++ .+|+|.||..
T Consensus 157 -eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~-- 233 (534)
T COG4172 157 -ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQH-- 233 (534)
T ss_pred -ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEec--
Confidence 8999999999999999999999999999999999999999888764 5999999999999986 6899988875
Q ss_pred ceEEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCC
Q 001511 652 EWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIA 719 (1064)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~ 719 (1064)
|+++|.+.+++.|.+ |+||||+.|+++.|.-
T Consensus 234 ------------------------------------G~ivE~~~t~~lF~~-PqHpYTr~Ll~aeP~g 264 (534)
T COG4172 234 ------------------------------------GEIVETGTTETLFAA-PQHPYTRKLLAAEPSG 264 (534)
T ss_pred ------------------------------------cEEeecCcHHHHhhC-CCChHHHHHHhcCCCC
Confidence 345566777777775 8999999999998863
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=361.79 Aligned_cols=198 Identities=28% Similarity=0.423 Sum_probs=173.4
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCC---C-cc---ccccEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV---G-SD---LNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~---~-~~---lr~~i~ 516 (1064)
+|+++|+++.|+ ..++++|||++|+.||.+|+.||||||||||+|+|+||..|++|+|.++|. | .. -.++||
T Consensus 2 ~i~i~~~~~~~~-~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 2 SIRINNVKKRFG-AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ceeehhhhhhcc-cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 478888988874 567999999999999999999999999999999999999999999999997 5 11 237899
Q ss_pred EEecCCCCC-cccHHHHhcCCCCCCCcC--CCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 517 YVPQRPYTA-VGTLRDQLIYPLTSDQEV--EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 517 ~v~Q~p~l~-~~Ti~eni~~~~~~~~~~--~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
||||+.-+| ..||.+||+|+....... +...+.++.++|+.++|+.+.++||. +||||||||||+||||
T Consensus 81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~--------QLSGGQrQRVALARAL 152 (345)
T COG1118 81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA--------QLSGGQRQRVALARAL 152 (345)
T ss_pred EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCch--------hcChHHHHHHHHHHHh
Confidence 999999876 579999999998644221 23456789999999999999999995 9999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~----~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+.+|++|+||||+++||....+.+.+.|+ +.|.|+++||||.+.+ +.+|+|++|+++
T Consensus 153 A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G 214 (345)
T COG1118 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQG 214 (345)
T ss_pred hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCC
Confidence 99999999999999999988887766554 4599999999999876 579999999876
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=381.47 Aligned_cols=200 Identities=26% Similarity=0.383 Sum_probs=174.6
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEE
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFY 517 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~ 517 (1064)
.+.|+++||++.|+ +.++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...+++|+|
T Consensus 4 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 4 KNFVVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred CcEEEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 35799999999995 4679999999999999999999999999999999999999999999999964 123578999
Q ss_pred EecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 518 v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
|||++.+|. .|+.||+.|+...........++++.++++.+++.++.+++|. +|||||||||+|||||+.+
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~--------~LSgGq~QRVaLARaL~~~ 154 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVD--------QISGGQQQRVALARALILK 154 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChh--------hCCHHHHHHHHHHHHHHcC
Confidence 999998875 6999999998643222122345678899999999999999884 8999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|+++|||||||+||+.+++++.+.+++ .|+|+|+||||++.+ ..+|+|++|+++
T Consensus 155 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G 213 (351)
T PRK11432 155 PKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKG 213 (351)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999998876653 489999999999987 579999999975
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=357.01 Aligned_cols=198 Identities=30% Similarity=0.440 Sum_probs=169.5
Q ss_pred EEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-cc---------c
Q 001511 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SD---------L 511 (1064)
Q Consensus 445 i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~---------l 511 (1064)
|+++||++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4689999999653 679999999999999999999999999999999999999999999999964 11 2
Q ss_pred cccEEEEecCCCCCcc-cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 512 NKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 512 r~~i~~v~Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
++.++|+||++.++.. |++||+.++...........++++.++++.+|+++..++.|. +||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~la 152 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPS--------ELSGGQQQRVAIA 152 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChh--------hcCHHHHHHHHHH
Confidence 4679999999988765 999999875432211111234567889999999988887763 8999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|||+.+|+++||||||++||+.+++.+.+.+++ .|+|+|+|||+++.+..||++++|+++
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G 216 (218)
T cd03255 153 RALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDG 216 (218)
T ss_pred HHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCC
Confidence 999999999999999999999999998887754 389999999999988899999999864
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=350.15 Aligned_cols=193 Identities=30% Similarity=0.404 Sum_probs=168.1
Q ss_pred EEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---ccccccEEEEecCC
Q 001511 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---SDLNKEIFYVPQRP 522 (1064)
Q Consensus 446 ~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---~~lr~~i~~v~Q~p 522 (1064)
+++||++.|++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||+|
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 367899999643679999999999999999999999999999999999999999999999965 23456899999998
Q ss_pred --CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001511 523 --YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1064)
Q Consensus 523 --~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1064)
.++..|++||+.++..... ...+++.++++.+++.++.++.|. +||||||||++|||||+.+|+++
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 81 DYQLFTDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPL--------SLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCch--------hCCHHHHHHHHHHHHHHhCCCEE
Confidence 3567899999987643211 234578899999999988888774 89999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 601 ILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 601 iLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 202 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANG 202 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999888764 4899999999999886 69999999864
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=353.05 Aligned_cols=197 Identities=27% Similarity=0.345 Sum_probs=169.2
Q ss_pred EEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccccccEEEEec
Q 001511 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~lr~~i~~v~Q 520 (1064)
++++|+++.|+++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 4689999999642 579999999999999999999999999999999999999999999999965 345678999999
Q ss_pred CCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
++.++. .|++||+.++............+++.++++.+++.++.++.|. +||||||||++|||||+.+|++
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrl~la~al~~~p~l 152 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPH--------QLSGGMRQRVALARALAVDPDV 152 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcc--------cCCHHHHHHHHHHHHHHcCCCE
Confidence 998776 6999999875322111111234567889999999988888773 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~ 649 (1064)
+||||||++||+.++..+.+.+++ .|+|+|+|||+++.+ ..||++++|++
T Consensus 153 llLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 207 (220)
T cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSA 207 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 999999999999999999887754 389999999999976 57999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=365.36 Aligned_cols=199 Identities=24% Similarity=0.328 Sum_probs=172.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
.++++||++.|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 68999999999755679999999999999999999999999999999999999999999999964 134578999
Q ss_pred EecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 518 VPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 518 v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
+||+| .++..|+.||+.++...........++++.++++.+++.++.++.|. +||||||||++|||||+.
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--------~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPY--------HLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChh--------hCCHHHHHHHHHHHHHHc
Confidence 99998 56778999999876432111111234567889999999988888884 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+|++|||||||++||+.++.++.+.+++ .|.|+|++||+++.+ +.||+|++|+++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999888754 389999999999987 579999999865
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=352.16 Aligned_cols=199 Identities=30% Similarity=0.430 Sum_probs=170.3
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--------ccccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLNKE 514 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~lr~~ 514 (1064)
+++++|+++.|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .+++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 37899999999645689999999999999999999999999999999999999999999999964 1 24578
Q ss_pred EEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 515 IFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 515 i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
++|+||+|.++. .|+.||+.++...........++++.++++.+++.+..++.|. +||||||||++|||||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrl~la~al 152 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPE--------QLSGGEQQRVAIARAI 152 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChh--------hCCHHHHHHHHHHHHH
Confidence 999999998775 6999999875321111111234577889999999988777773 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCC
Confidence 999999999999999999999999888765 4899999999999886 58999999864
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=357.32 Aligned_cols=197 Identities=27% Similarity=0.357 Sum_probs=168.2
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---------ccccccE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDLNKEI 515 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~lr~~i 515 (1064)
|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..+++.+
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 47899999995 4679999999999999999999999999999999999999999999999954 1246789
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCC-CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~-~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+|+||++.++. .|+.||+.++.... ........+++.++++.+++.++.++.|. +||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrv~ia~al 151 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPA--------ELSGGMKKRVALARAL 151 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChh--------hCCHHHHHHHHHHHHH
Confidence 99999998876 49999998753211 11111224567789999999888877763 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.+++.+.+.+++ .|+|+|+|||+++.+. .||++++|+++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G 213 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDG 213 (235)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECC
Confidence 999999999999999999999998887764 3899999999999875 69999999864
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=378.26 Aligned_cols=198 Identities=25% Similarity=0.381 Sum_probs=173.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEe
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~ 519 (1064)
.|+++||++.|+ +..+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ ...++.++|||
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 4 YLSIDNIRKRFG-AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred EEEEEEEEEEeC-CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 589999999996 4679999999999999999999999999999999999999999999999964 12357899999
Q ss_pred cCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|++.+|. .|++||+.|+............+++.++++.++++++.++.|. +|||||||||+|||||+.+|+
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~--------~LSgGq~QRvaLARaL~~~P~ 154 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPG--------QLSGGQQQRVALARALATSPG 154 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChh--------hCCHHHHHHHHHHHHHhcCCC
Confidence 9998875 7999999997543221112235678899999999999999884 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
++|||||||+||+.+++++.+.+++ .|.|+|+||||++.+ ..+|+|++|+++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G 211 (353)
T TIGR03265 155 LLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHG 211 (353)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999998877654 489999999999986 579999999975
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=352.11 Aligned_cols=197 Identities=30% Similarity=0.434 Sum_probs=168.2
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEec
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~Q 520 (1064)
++++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYG-SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeC-CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 46899999995 4679999999999999999999999999999999999999999999999964 123568999999
Q ss_pred CCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
++.++. .|++||+.++............+++.++++.+++.++.++.|. +||||||||++|||||+.+|++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPH--------ELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChh--------hCCHHHHHHHHHHHHHhcCCCE
Confidence 998765 6999999875322111111234567889999999988888773 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+||||||++||+.++..+.+.+++ .|+|+|++||+++.+ ..||++++|+++
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G 207 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEG 207 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECC
Confidence 999999999999999999887764 389999999999976 469999999864
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=356.80 Aligned_cols=198 Identities=27% Similarity=0.387 Sum_probs=168.5
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEe
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~ 519 (1064)
.++++||++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+|
T Consensus 2 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 2 SIEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 3789999999964 679999999999999999999999999999999999999999999999964 12246799999
Q ss_pred cCCCCCc-ccHHHHhcCCCCCCCc----CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 520 QRPYTAV-GTLRDQLIYPLTSDQE----VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~----~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
|+|.++. .|+.||+.++...... ......+++.++++.+++.++.++.+. +||||||||++|||||+
T Consensus 81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrl~la~al~ 152 (239)
T cd03296 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA--------QLSGGQRQRVALARALA 152 (239)
T ss_pred cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChh--------hCCHHHHHHHHHHHHHh
Confidence 9998775 6999999876432111 011123467788999999888887763 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+ ..+|++++|+++
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G 213 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKG 213 (239)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999998887754 389999999999976 469999999864
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=376.33 Aligned_cols=199 Identities=27% Similarity=0.380 Sum_probs=171.1
Q ss_pred cEEEEeeEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--------cc
Q 001511 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DL 511 (1064)
Q Consensus 444 ~i~~~nvs~~y~~---~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~l 511 (1064)
+|+++||++.|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . ..
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 4789999999962 3579999999999999999999999999999999999999999999999964 1 13
Q ss_pred cccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 512 NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 512 r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
+++|+||||++.++. .|++||+.++............+++.++++.+|+.++.++.|. +||||||||++||
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~LSgGq~qRv~lA 152 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPA--------QLSGGQKQRVAIA 152 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh--------hCCHHHHHHHHHH
Confidence 678999999998775 6999999876432211111234567889999999988888774 8999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||+++|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G 217 (343)
T PRK11153 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAG 217 (343)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999887764 3899999999999875 59999999864
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=327.27 Aligned_cols=200 Identities=31% Similarity=0.420 Sum_probs=176.2
Q ss_pred CcEEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---------cc
Q 001511 443 NYIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SD 510 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~ 510 (1064)
..|+++++++.-+.+ ..+|++|+|.|++||.++||||||||||||+-+++|+..|++|+|.+.|++ ..
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 368888888865433 479999999999999999999999999999999999999999999999975 12
Q ss_pred c-cccEEEEecCCC-CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001511 511 L-NKEIFYVPQRPY-TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1064)
Q Consensus 511 l-r~~i~~v~Q~p~-l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1064)
+ .+++|||||... +++.|-.||+..|....++......+...+.|+++||.+.+..||. +||||||||||
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~--------qLSGGEQQRVA 156 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPA--------QLSGGEQQRVA 156 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCcc--------ccCchHHHHHH
Confidence 3 378999999986 4788999999999876554444455678899999999999999995 99999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 589 IARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|||||...|++|+.||||.+||.++-+++.+++ ++.|.|.++||||+.+...|||++.|..+
T Consensus 157 iARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G 222 (228)
T COG4181 157 LARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSG 222 (228)
T ss_pred HHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecc
Confidence 999999999999999999999999999887765 45699999999999999999999999864
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=378.47 Aligned_cols=200 Identities=26% Similarity=0.403 Sum_probs=173.6
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEE
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFY 517 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~ 517 (1064)
.+.|+++|+++.|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|
T Consensus 12 ~~~L~l~~l~~~~~-~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 12 SPLVELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred CceEEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 35799999999995 4679999999999999999999999999999999999999999999999964 123568999
Q ss_pred EecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 518 v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
|||++.+|. .|+.|||.|+....+.......+++.++++.+++.++.+++|. +|||||||||+|||||+.+
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~--------~LSgGq~QRVaLARaL~~~ 162 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPH--------QLSGGQQQRVAIARAVVNK 162 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChh--------hCCHHHHHHHHHHHHHhcC
Confidence 999998875 5999999997643221111224578889999999999999984 8999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|+++|||||||+||+.+++.+.+.+++ .|.|+|+||||+..+ ..+|+|++|+++
T Consensus 163 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G 221 (375)
T PRK09452 163 PKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDG 221 (375)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999998877654 489999999999986 579999999874
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=375.62 Aligned_cols=198 Identities=26% Similarity=0.401 Sum_probs=171.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEe
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~ 519 (1064)
.|+++||++.|+ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...++.++|||
T Consensus 2 ~L~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSFG-RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEeC-CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 378999999995 4679999999999999999999999999999999999999999999999965 12346899999
Q ss_pred cCCCCCc-ccHHHHhcCCCCCC----CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 520 QRPYTAV-GTLRDQLIYPLTSD----QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~----~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
|++.++. .|+.||+.++.... .......++++.++++.++++++.+++|. +|||||||||+|||||+
T Consensus 81 Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--------~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPA--------QLSGGQKQRVALARALA 152 (353)
T ss_pred cCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChh--------hCCHHHHHHHHHHHHHh
Confidence 9998875 69999999875421 11111234678899999999999999884 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.+++.+.+.+++ .|+|+|+||||++.+ ..||+|++|+++
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G 213 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQG 213 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999998877654 389999999999986 469999999864
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=350.85 Aligned_cols=198 Identities=26% Similarity=0.341 Sum_probs=169.5
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--------cccccE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLNKEI 515 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~lr~~i 515 (1064)
++++|+++.|++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 4689999999655679999999999999999999999999999999999999999999999864 1 245689
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+|+||++.++. .|++||+.++...........++++.++++.+++++..++.|. +||||||||++|||||+
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~laral~ 152 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPA--------ELSGGEQQRVAIARAIV 152 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChh--------hcCHHHHHHHHHHHHHH
Confidence 99999998776 5999999875322111111234567889999999988887773 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G 212 (214)
T cd03292 153 NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERG 212 (214)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999887764 4899999999999886 58999999864
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=361.00 Aligned_cols=199 Identities=22% Similarity=0.337 Sum_probs=177.5
Q ss_pred cEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEE
Q 001511 444 YIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~ 516 (1064)
.|+++||++.|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.+ .++|+.|+
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 4899999999974 4679999999999999999999999999999999999998 78999999965 24678999
Q ss_pred EEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHH
Q 001511 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL 593 (1064)
||||+|.+|.+|+++|+..... ..++++.++++.+|+.++.+++|.+..+ +.|..||||||||++||||+
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~~-------~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYGK-------WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred EECCCcccchhhHHHHhhhccC-------CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999963211 3467889999999999999999865333 36788999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.+...+.+.+++ .++|+|+||||++.+..||+|++|+++
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G 212 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEEN 212 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCC
Confidence 999999999999999999999999998875 389999999999999899999999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=350.38 Aligned_cols=197 Identities=29% Similarity=0.416 Sum_probs=166.4
Q ss_pred EEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEE
Q 001511 446 EFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 518 (1064)
Q Consensus 446 ~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v 518 (1064)
+++||++.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 368999999642 579999999999999999999999999999999999999999999999964 1345789999
Q ss_pred ecCCC--CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 519 PQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 519 ~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
||++. ++..|++||+.++...........++++.++++.+++.+..++.| .+||||||||++|||||+.+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP--------FTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHHHHHHHHHHHhcC
Confidence 99983 567899999987532111111112346778999999988888776 38999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh-cCEEEEEeCC
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSLDGE 650 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~-~D~Il~l~~~ 650 (1064)
|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+.. ||+|++|+++
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999887754 37899999999998865 9999999864
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=349.26 Aligned_cols=195 Identities=33% Similarity=0.463 Sum_probs=166.8
Q ss_pred EEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccccccEEEEecCCCC
Q 001511 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRPYT 524 (1064)
Q Consensus 446 ~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~lr~~i~~v~Q~p~l 524 (1064)
+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||++.+
T Consensus 1 ~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 1 EVEDLTVSYG-GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred CcccceeEEC-CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence 3678999985 4679999999999999999999999999999999999999999999999975 2456789999999875
Q ss_pred ---CcccHHHHhcCCCCCCC----cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 525 ---AVGTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 525 ---~~~Ti~eni~~~~~~~~----~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
+..|++||+.++..... .......+++.++++.++++++.++.+. +||||||||++|||||+.+|
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrv~la~al~~~p 151 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIG--------ELSGGQQQRVLLARALVQDP 151 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcc--------cCCHHHHHHHHHHHHHHcCC
Confidence 45799999987643211 0111234567889999999988887763 89999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1064)
+++||||||++||+.+++.+.+.+++ .|.|+|+|||+++.+. .||++++|++
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~ 207 (213)
T cd03235 152 DLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR 207 (213)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcC
Confidence 99999999999999999998887764 4799999999999875 6999999975
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=370.54 Aligned_cols=206 Identities=23% Similarity=0.226 Sum_probs=169.5
Q ss_pred CCCcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCC------
Q 001511 441 EANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG------ 508 (1064)
Q Consensus 441 ~~~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~------ 508 (1064)
..+.|+++|+++.|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3568999999999964 4579999999999999999999999999999999999996 579999999975
Q ss_pred --ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCC-CCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHH
Q 001511 509 --SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEP-LTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 509 --~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~-~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
.++|+.++||||+|+++++|++||+.++...+..... ..++.+.++++.+++.+.++.. ....+.+|||||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~----~~~~~~~LSgGqkq 232 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDD----LDKAGNALSGGQQQ 232 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhh----hhCCcccCCHHHHH
Confidence 1357889999999999999999999975322111100 1122356788888875332211 11245689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHh-cCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAF-HDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~-~D~Il~l~~~ 650 (1064)
|++||||++.+|+|+||||||+|||+.+...+.+.+++ .++|+|+|||+++++.. ||+|++|+++
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G 300 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQG 300 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999998888765 37999999999999875 9999999874
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=352.24 Aligned_cols=200 Identities=25% Similarity=0.351 Sum_probs=170.1
Q ss_pred CcEEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--------c
Q 001511 443 NYIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------D 510 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~ 510 (1064)
+.++++||++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 468999999999743 479999999999999999999999999999999999999999999999964 1 1
Q ss_pred c-cccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001511 511 L-NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1064)
Q Consensus 511 l-r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1064)
. ++.++|+||++.++. .|++||+.++...........++++.++++.+|+.+..++.|. +||||||||++
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~LSgG~~qrl~ 155 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPS--------ELSGGERQRVA 155 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChh--------hCCHHHHHHHH
Confidence 2 257999999998775 5999999874321111111234568889999999888777663 89999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 589 IARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
||||++.+|+++||||||++||+.+++.+.+.+++ .|+|+|+|||+++.+..+|++++|+++
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G 221 (233)
T PRK11629 156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDG 221 (233)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECC
Confidence 99999999999999999999999999998887754 389999999999999888999999864
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=349.44 Aligned_cols=198 Identities=26% Similarity=0.365 Sum_probs=168.4
Q ss_pred EEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-----c---cc
Q 001511 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----D---LN 512 (1064)
Q Consensus 445 i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~---lr 512 (1064)
++++||++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . + ++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 6899999999642 479999999999999999999999999999999999999999999999864 1 1 23
Q ss_pred -ccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 513 -KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 513 -~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
+.++|+||++.++. .|++||+.++............+++.++++.+|+++..++.|. +||||||||++||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~la 153 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPS--------ELSGGERQRVAIA 153 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChh--------hCCHHHHHHHHHH
Confidence 57999999998775 6999999874321111111124567789999999888887763 8999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|||+.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+..+|++++|+++
T Consensus 154 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G 217 (221)
T TIGR02211 154 RALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDG 217 (221)
T ss_pred HHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCC
Confidence 999999999999999999999999999887753 389999999999998889999999864
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=362.91 Aligned_cols=199 Identities=28% Similarity=0.359 Sum_probs=172.2
Q ss_pred cEEEEeeEEEcCC--CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccE
Q 001511 444 YIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1064)
Q Consensus 444 ~i~~~nvs~~y~~--~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i 515 (1064)
.++++||++.|++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 6899999999964 2469999999999999999999999999999999999999999999999964 1356789
Q ss_pred EEEecCCC--CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+|+||+|. ++..|++|||.++...........++++.++++.+|++++.++.|. +||||||||++|||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~LSgGq~qrv~lAral 155 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPA--------RLSGGQKQRVAIAGAV 155 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcc--------cCCHHHHHHHHHHHHH
Confidence 99999983 5667999999986432211111234568889999999998888874 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+.+|++|||||||++||+.++..+.+.+++ .|+|+|++||+++.+..||+|++|+++
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G 216 (279)
T PRK13650 156 AMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNG 216 (279)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 999999999999999999999998887653 389999999999988889999999864
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=328.15 Aligned_cols=195 Identities=25% Similarity=0.340 Sum_probs=170.8
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEec
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~Q 520 (1064)
+.+++|.+.|.. .=-.++++|++||+++|+||||||||||+++|+|+..|.+|+|.++|++ .-..+-++++||
T Consensus 2 l~L~~V~~~y~~---~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQ 78 (231)
T COG3840 2 LALDDVRFSYGH---LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78 (231)
T ss_pred ccccceEEeeCc---ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhh
Confidence 567889998853 2246789999999999999999999999999999999999999999987 234578999999
Q ss_pred CCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
+..+|. .||.+|+.++....-....+..+++..++.++|+..+.+++|. +||||||||+|+||+|+++-+|
T Consensus 79 EnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~--------~LSGGqRQRvALARclvR~~Pi 150 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG--------ELSGGQRQRVALARCLVREQPI 150 (231)
T ss_pred ccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc--------ccCchHHHHHHHHHHHhccCCe
Confidence 999986 5999999998765433334567789999999999999999995 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++||||+|+|||..+.++..++ .+.+.|++||||.++.++ .+|++++++++
T Consensus 151 lLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~G 206 (231)
T COG3840 151 LLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNG 206 (231)
T ss_pred EEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCC
Confidence 9999999999999998877654 456999999999999875 69999999975
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=349.12 Aligned_cols=199 Identities=25% Similarity=0.339 Sum_probs=169.3
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--------ccccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLNKE 514 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~lr~~ 514 (1064)
+|+++||++.|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .+++.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 37899999999545689999999999999999999999999999999999999999999999964 1 14578
Q ss_pred EEEEecCCCC-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 515 IFYVPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 515 i~~v~Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
++|+||+|.+ +..|++||+.++............+++.++++.+++.+..++.|. +||||||||++|||||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~laral 152 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPI--------QLSGGEQQRVGIARAV 152 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCch--------hCCHHHHHHHHHHHHH
Confidence 9999999986 467999999875322111111223457789999999888887763 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.+++.+.+.+++ .+.|+|+|||+++.+. .||+|++|+++
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDG 213 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999998887764 3799999999999886 58999999864
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=363.72 Aligned_cols=198 Identities=25% Similarity=0.359 Sum_probs=168.9
Q ss_pred EEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-------ccc
Q 001511 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-------DLN 512 (1064)
Q Consensus 445 i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-------~lr 512 (1064)
|+++||++.|+++ +++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 7899999999742 479999999999999999999999999999999999999999999999964 1 346
Q ss_pred ccEEEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh--hHHhcCCCCcccCCCCCcChHHHHHHH
Q 001511 513 KEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE--YLLDRYPPEKEINWGDELSLGEQQRLG 588 (1064)
Q Consensus 513 ~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~--~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1064)
++||||||+| .++..|++||+.++....+.......+++.++++.+|++ ++.++.| .+||||||||++
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~--------~~LSgGq~qrv~ 154 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSP--------FELSGGQKRRVA 154 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCc--------ccCCHHHHHHHH
Confidence 7899999998 466789999998754322111112345678899999997 5666666 489999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 589 IARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|||||+.+|++|||||||++||+.++.++.+.+++ .|.|+|+|||+++.+ ..||+|++|+++
T Consensus 155 iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G 221 (287)
T PRK13637 155 IAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221 (287)
T ss_pred HHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999887753 389999999999987 579999999864
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=349.57 Aligned_cols=198 Identities=24% Similarity=0.302 Sum_probs=169.4
Q ss_pred EEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEE
Q 001511 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIF 516 (1064)
Q Consensus 445 i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~ 516 (1064)
++++||++.|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++++.++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 7899999999643 179999999999999999999999999999999999999999999999964 23467899
Q ss_pred EEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
|+||++.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+.
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV--------GGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhh--------hhcCHHHHHHHHHHHHHhc
Confidence 9999998876 599999976432211111123457788999999998887766 3899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|+++||||||++||+.+.+.+.+.+++ .|.|+|+|||+++.+. .+|++++|+++
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G 212 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRG 212 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999998887764 4899999999999765 69999999864
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=367.38 Aligned_cols=201 Identities=21% Similarity=0.270 Sum_probs=170.9
Q ss_pred CCcEEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC--c------
Q 001511 442 ANYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--S------ 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--~------ 509 (1064)
...|+++||++.|+++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 4579999999999642 469999999999999999999999999999999999999999999999843 1
Q ss_pred --------------cccccEEEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcc
Q 001511 510 --------------DLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKE 572 (1064)
Q Consensus 510 --------------~lr~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~ 572 (1064)
.+++.|+||||+| +++..|++||+.++............+++.++++.++++ ++.++.|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---- 174 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP---- 174 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc----
Confidence 2467899999998 578889999998864321111112234677889999996 5777766
Q ss_pred cCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEe
Q 001511 573 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLD 648 (1064)
Q Consensus 573 ~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~ 648 (1064)
.+||||||||++|||||+.+|++|||||||++||+.++..+.+.+++ .|+|+|+||||++.+ +.||+|++|+
T Consensus 175 ----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~ 250 (320)
T PRK13631 175 ----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMD 250 (320)
T ss_pred ----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 48999999999999999999999999999999999999999887753 489999999999976 5799999998
Q ss_pred CC
Q 001511 649 GE 650 (1064)
Q Consensus 649 ~~ 650 (1064)
++
T Consensus 251 ~G 252 (320)
T PRK13631 251 KG 252 (320)
T ss_pred CC
Confidence 75
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=374.78 Aligned_cols=200 Identities=23% Similarity=0.385 Sum_probs=173.1
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEE
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFY 517 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~ 517 (1064)
...|+++|+++.|+ +.++|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ ...++.|||
T Consensus 17 ~~~l~l~~v~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 17 TPLLEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CceEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 35799999999995 4679999999999999999999999999999999999999999999999964 123578999
Q ss_pred EecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 518 v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
|||++.+|. .|+.||+.|+............+++.++++.+++.++.+++|. +|||||||||+|||||+.+
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~--------~LSgGq~QRVaLARAL~~~ 167 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH--------QLSGGQRQRVALARSLAKR 167 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh--------hCCHHHHHHHHHHHHHhcC
Confidence 999998875 5999999997543222122234678899999999999999885 8999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|++||||||||+||+..++.+.+.+ ++.|.|+|++|||++.+ ..+|+|++|+++
T Consensus 168 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G 226 (377)
T PRK11607 168 PKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRG 226 (377)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999998876544 44589999999999986 579999999864
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=346.34 Aligned_cols=197 Identities=24% Similarity=0.373 Sum_probs=167.8
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEec
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~Q 520 (1064)
|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFG-NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEEC-CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 47899999985 4679999999999999999999999999999999999999999999999964 122457999999
Q ss_pred CCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
++.++. .|++||+.++...........++++.++++.+++.+..++.|. +||||||||++|||||+.+|++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPK--------QLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChh--------hCCHHHHHHHHHHHHHhcCCCE
Confidence 998774 6999999875322111111234567788999999988888773 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .+|++++++++
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g 207 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDG 207 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 999999999999999998887754 3899999999999875 59999999764
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=349.20 Aligned_cols=198 Identities=21% Similarity=0.246 Sum_probs=169.2
Q ss_pred EEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEE
Q 001511 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1064)
Q Consensus 445 i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v 518 (1064)
|+++||++.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..++++++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 4789999999643 689999999999999999999999999999999999999999999999964 2346789999
Q ss_pred ecCCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 519 PQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 519 ~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
||++.++ ..|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+.+|
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p 152 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRA--------RTLSGGMKRKLSLAIALIGGP 152 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChh--------hhCCHHHHHHHHHHHHHhcCC
Confidence 9999877 5799999987532211111122356788999999988777766 389999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+. .||++++|+++
T Consensus 153 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 208 (220)
T cd03263 153 SVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDG 208 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECC
Confidence 99999999999999999999988865 3689999999999885 69999999864
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=352.48 Aligned_cols=199 Identities=24% Similarity=0.352 Sum_probs=169.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--------ccccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLNKE 514 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~lr~~ 514 (1064)
+++++||++.|+.++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .+++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 37899999999635679999999999999999999999999999999999999999999999964 1 14678
Q ss_pred EEEEecCCCCCc-ccHHHHhcCCCCCCC--------cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHH
Q 001511 515 IFYVPQRPYTAV-GTLRDQLIYPLTSDQ--------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 515 i~~v~Q~p~l~~-~Ti~eni~~~~~~~~--------~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
++|+||++.++. .|++||+.++..... ......++++.++++.+++.+..++.+ .+|||||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~q 152 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA--------DQLSGGQQQ 152 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHHH
Confidence 999999998765 699999987532110 011123456788999999988877766 389999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|++|||||+.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+ ..||++++|+++
T Consensus 153 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G 222 (243)
T TIGR02315 153 RVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAG 222 (243)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 99999999999999999999999999999998887754 389999999999987 469999999864
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=351.54 Aligned_cols=194 Identities=29% Similarity=0.366 Sum_probs=169.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++++.++|
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSF-GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 489999999995 4679999999999999999999999999999999999999999999999964 234678999
Q ss_pred EecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
+||++.++..|++||+.++..... ...+++.++++.++++ ++.++.+ .+||||||||++|||||+.+
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDV--------KNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCCc--------ccCCHHHHHHHHHHHHHhcC
Confidence 999999888899999987533211 2245678899999996 5667766 38999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .||+|++|+++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 999999999999999999998887754 3899999999999875 69999999864
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=358.03 Aligned_cols=199 Identities=29% Similarity=0.366 Sum_probs=166.3
Q ss_pred cEEEEeeEEEcCC--------CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-----
Q 001511 444 YIEFSGVKVVTPT--------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S----- 509 (1064)
Q Consensus 444 ~i~~~nvs~~y~~--------~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~----- 509 (1064)
+|+++||++.|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 4889999999963 3679999999999999999999999999999999999999999999999964 1
Q ss_pred ---cccccEEEEecCCC--CC-cccHHHHhcCCCCCC-CcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcCh
Q 001511 510 ---DLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSL 581 (1064)
Q Consensus 510 ---~lr~~i~~v~Q~p~--l~-~~Ti~eni~~~~~~~-~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSG 581 (1064)
.+++.++|+||+|. ++ ..|+.||+.++.... .......++++.++++.+++. +..++.+ .+|||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~~LSg 153 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLP--------RQLSG 153 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCCh--------hhCCH
Confidence 13567999999983 33 479999997643211 111112345678899999996 5666655 48999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||||++|||||+.+|++|||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 154 Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G 227 (265)
T TIGR02769 154 GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKG 227 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCC
Confidence 999999999999999999999999999999999998887754 3899999999999886 69999999864
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=353.49 Aligned_cols=197 Identities=24% Similarity=0.317 Sum_probs=168.4
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccccccEEEEecCC
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRP 522 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~lr~~i~~v~Q~p 522 (1064)
+++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+..++|+||++
T Consensus 1 ml~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~ 79 (255)
T PRK11248 1 MLQISHLYADYG-GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE 79 (255)
T ss_pred CEEEEEEEEEeC-CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC
Confidence 378999999995 4679999999999999999999999999999999999999999999999965 22345699999999
Q ss_pred CCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001511 523 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1064)
Q Consensus 523 ~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1064)
.++. .|+.||+.++............+++.++++.+++.+..++.| .+||||||||++|||||+.+|+++|
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGq~qrl~laral~~~p~lll 151 (255)
T PRK11248 80 GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYI--------WQLSGGQRQRVGIARALAANPQLLL 151 (255)
T ss_pred ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCCh--------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8775 699999987532111111122456788999999988877766 3899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001511 602 LDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1064)
Q Consensus 602 LDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1064)
|||||++||+.+...+.+.+++ .|+|+|+|||+++.+. .||++++|++
T Consensus 152 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~ 204 (255)
T PRK11248 152 LDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSP 204 (255)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999887754 3899999999999874 6999999986
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=350.99 Aligned_cols=198 Identities=23% Similarity=0.356 Sum_probs=168.5
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--------cccccE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLNKEI 515 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~lr~~i 515 (1064)
++++||++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .+++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 4689999999643689999999999999999999999999999999999999999999999964 1 235689
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCC--------CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSD--------QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~--------~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1064)
+|+||++.++. .|++||+.++.... ........+++.++++.+++.+..++.+ .+||||||||
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qr 152 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA--------DQLSGGQQQR 152 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc--------ccCCHHHHHH
Confidence 99999998765 69999998753211 0011123456788999999988777766 4899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 587 laIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++|||||+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 153 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G 221 (241)
T cd03256 153 VAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDG 221 (241)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999998887754 3899999999999887 79999999864
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=347.62 Aligned_cols=200 Identities=28% Similarity=0.355 Sum_probs=170.4
Q ss_pred CcEEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc-c--------
Q 001511 443 NYIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-D-------- 510 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~-~-------- 510 (1064)
..|+++||++.|+++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 479999999999653 3699999999999999999999999999999999999999999999999641 1
Q ss_pred c-cccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001511 511 L-NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1064)
Q Consensus 511 l-r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1064)
. ++.++|+||++.++. .|+.||+.++............+++.++++.+++.+..++.|. +||||||||++
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~Ge~qrl~ 156 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPA--------QLSGGEQQRVA 156 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChh--------hCCHHHHHHHH
Confidence 1 257999999998776 5999999864321111111234578889999999988888774 89999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 589 IARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|||||+.+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+..+|++++|+++
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g 222 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNG 222 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999887753 389999999999998889999999864
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=330.83 Aligned_cols=166 Identities=54% Similarity=0.997 Sum_probs=153.6
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCC
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 524 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l 524 (1064)
|+++|+++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++|++|++.+
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----~~i~~~~q~~~~ 75 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----EDLLFLPQRPYL 75 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----ceEEEECCCCcc
Confidence 478999999975568999999999999999999999999999999999999999999999883 579999999998
Q ss_pred CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeC
Q 001511 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1064)
Q Consensus 525 ~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDE 604 (1064)
+..|+.||+.++ .+ .+||||||||++||||++.+|+++||||
T Consensus 76 ~~~tv~~nl~~~------------------------------~~--------~~LS~G~~~rv~laral~~~p~~lllDE 117 (166)
T cd03223 76 PLGTLREQLIYP------------------------------WD--------DVLSGGEQQRLAFARLLLHKPKFVFLDE 117 (166)
T ss_pred ccccHHHHhhcc------------------------------CC--------CCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 888999999753 12 3799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhcCEEEEEeCCCce
Q 001511 605 CTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGEW 653 (1064)
Q Consensus 605 PTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~~g~~ 653 (1064)
||++||+.+++.+.+.+++.+.|+|++||+++....+|++++++++|+|
T Consensus 118 Pt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~~~d~i~~l~~~~~~ 166 (166)
T cd03223 118 ATSALDEESEDRLYQLLKELGITVISVGHRPSLWKFHDRVLDLDGEGGW 166 (166)
T ss_pred CccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHhhCCEEEEEcCCCCC
Confidence 9999999999999999988889999999999988899999999998865
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=348.08 Aligned_cols=197 Identities=23% Similarity=0.237 Sum_probs=168.4
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEEe
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v~ 519 (1064)
|+++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+|
T Consensus 1 i~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYG-DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEEC-CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 47899999995 4679999999999999999999999999999999999999999999999854 13456899999
Q ss_pred cCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|++.++. .|++||+.++...........++++.++++.+++++..++.|. +||||||||++||||++.+|+
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qr~~la~al~~~p~ 151 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVK--------TYSGGMRRRLEIARSLVHRPE 151 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChh--------hCCHHHHHHHHHHHHHhcCCC
Confidence 9998765 5999999875321111111234567889999999988888773 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+. .+|++++|+++
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G 208 (220)
T cd03265 152 VLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHG 208 (220)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999998887754 3899999999999875 69999999864
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=361.90 Aligned_cols=199 Identities=23% Similarity=0.288 Sum_probs=170.0
Q ss_pred cEEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----------c
Q 001511 444 YIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----------S 509 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----------~ 509 (1064)
+|+++||++.|+.+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 47899999999643 259999999999999999999999999999999999999999999999964 1
Q ss_pred cccccEEEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHH
Q 001511 510 DLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 586 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1064)
++++.++||||+| .++..|+.||+.++...........++++.++++.+++. ++.++.|. +||||||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~--------~LSgGqkqr 152 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPF--------ELSGGQMRR 152 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcc--------cCCHHHHHH
Confidence 2467899999998 677789999999864322211112345678899999995 57777664 899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 587 laIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
++|||||+.+|++|||||||++||+.++..+.+.+++ .|.|+|++||+++.+ ..||+|++|+++
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G 220 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKG 220 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999998887754 489999999999987 579999999875
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=371.44 Aligned_cols=199 Identities=22% Similarity=0.316 Sum_probs=172.8
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCc--cEEEeCCCC----ccccccEE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS--GHIAKPGVG----SDLNKEIF 516 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~--G~I~i~g~~----~~lr~~i~ 516 (1064)
+.|+++||++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.+ ...++.|+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 4 GGIRIDHLRVAYG-ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred eEEEEEEEEEEEC-CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEE
Confidence 4689999999995 4679999999999999999999999999999999999999999 999999964 12356899
Q ss_pred EEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
||||++.+|. .|++||+.|+...........++++.++++.++|+++.++.|. +|||||||||+|||||+.
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~--------~LSgGq~QRvaLARAL~~ 154 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA--------QLSGGMQQRIAIARAIAI 154 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChh--------hCCHHHHHHHHHHHHHhc
Confidence 9999998875 5999999987543221112234578899999999999999885 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh----c-CcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA----M-GTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~----~-g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+|+++|||||||+||+..+.++.+.+++ . |.|+|+||||++.+ ..+|+|++|+++
T Consensus 155 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G 215 (362)
T TIGR03258 155 EPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDG 215 (362)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999998876643 3 79999999999986 569999999864
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=343.98 Aligned_cols=197 Identities=25% Similarity=0.325 Sum_probs=168.6
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC--ccccccEEEEecCC
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--SDLNKEIFYVPQRP 522 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--~~lr~~i~~v~Q~p 522 (1064)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||++
T Consensus 1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 47899999985 4679999999999999999999999999999999999999999999999975 23467899999999
Q ss_pred CCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001511 523 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1064)
Q Consensus 523 ~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1064)
.++. .|++||+.++...........++++.++++.+++.+..++.+ .+||||||||++|||||+.+|+++|
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~~~p~~ll 151 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV--------EELSKGNQQKVQFIAAVIHDPELLI 151 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcH--------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8776 599999986432111111123456788999999988777766 3899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 602 LDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 602 LDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .+|++++|+++
T Consensus 152 lDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 204 (210)
T cd03269 152 LDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKG 204 (210)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCC
Confidence 9999999999999998887764 3789999999999875 69999999864
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=351.78 Aligned_cols=193 Identities=21% Similarity=0.307 Sum_probs=170.5
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccccccEEEEecC
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQR 521 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~lr~~i~~v~Q~ 521 (1064)
..|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+||+
T Consensus 11 ~~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~ 89 (257)
T PRK11247 11 TPLLLNAVSKRYG-ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQD 89 (257)
T ss_pred CcEEEEEEEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecC
Confidence 5699999999995 4679999999999999999999999999999999999999999999998865 3456789999999
Q ss_pred CCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001511 522 PYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1064)
Q Consensus 522 p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1064)
+.++. .|++||+.++... ..++++.++++.+++.+..++.| .+||||||||++|||||+.+|+++
T Consensus 90 ~~l~~~~tv~enl~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGqkqrl~laraL~~~p~ll 155 (257)
T PRK11247 90 ARLLPWKKVIDNVGLGLKG------QWRDAALQALAAVGLADRANEWP--------AALSGGQKQRVALARALIHRPGLL 155 (257)
T ss_pred ccCCCCCcHHHHHHhcccc------hHHHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 98776 6999999875321 13467888999999988877766 389999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 601 ILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 601 iLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
||||||++||+.++..+.+.+++ .|.|+|+|||+++.+ ..||+|++|+++
T Consensus 156 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G 210 (257)
T PRK11247 156 LLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEG 210 (257)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999998887754 489999999999986 569999999864
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=353.72 Aligned_cols=199 Identities=23% Similarity=0.255 Sum_probs=166.6
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------c
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG--------S 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~--------~ 509 (1064)
+.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ .
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 6 AIIETENLNLFYT-DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred ceEEEeeeEEEeC-CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 4799999999996 46799999999999999999999999999999999999997 48999999854 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
..++.++|+||++.++..|++||+.++...... .....++++.++++.+++.+ ..++.+ .+||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LSgG~~ 156 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNA--------LSLSGGQQ 156 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCc--------ccCCHHHH
Confidence 246789999999988889999999876422111 01123456778889888742 334433 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+ ..+|++++|+++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G 225 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNG 225 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999888765 378999999999987 469999999864
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=363.05 Aligned_cols=198 Identities=19% Similarity=0.264 Sum_probs=169.5
Q ss_pred EEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------------
Q 001511 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------------ 508 (1064)
Q Consensus 445 i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------------ 508 (1064)
|+++||++.|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 7899999999753 269999999999999999999999999999999999999999999998642
Q ss_pred ------------------ccccccEEEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcC
Q 001511 509 ------------------SDLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRY 567 (1064)
Q Consensus 509 ------------------~~lr~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~ 567 (1064)
..+++.||||||+| .++..|+.|||.++...........++++.++++.+|+. ++.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 162 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRS 162 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC
Confidence 12467899999987 567789999999864322221122346788999999996 778887
Q ss_pred CCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCE
Q 001511 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDV 643 (1064)
Q Consensus 568 p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~ 643 (1064)
|. +||||||||++|||||+.+|++|||||||++||+.+...+.+.+++ .|.|+|+|||+++.+ ..||+
T Consensus 163 ~~--------~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adr 234 (305)
T PRK13651 163 PF--------ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKR 234 (305)
T ss_pred hh--------hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCE
Confidence 74 8999999999999999999999999999999999999998887754 489999999999876 67999
Q ss_pred EEEEeCC
Q 001511 644 VLSLDGE 650 (1064)
Q Consensus 644 Il~l~~~ 650 (1064)
|++|+++
T Consensus 235 v~vl~~G 241 (305)
T PRK13651 235 TIFFKDG 241 (305)
T ss_pred EEEEECC
Confidence 9999764
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=344.82 Aligned_cols=196 Identities=25% Similarity=0.323 Sum_probs=167.9
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEEe
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v~ 519 (1064)
|+++||++.|+ ++++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+|
T Consensus 1 i~~~~~~~~~~-~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYG-KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEEC-CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 47899999995 457999999999999 999999999999999999999999999999999965 13467899999
Q ss_pred cCCCCCcc-cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|++.++.. |+.||+.+.............+++.++++.+++.++.++.+ .+||||||||++|||||+.+|+
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p~ 150 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI--------GSLSGGMRRRVGIAQALVGDPS 150 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99988764 99999986432111111122456788999999998877766 3899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++||||||++||+.+++.+.+.+++. +.|+|++||+++.+. .+|++++|+++
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g 205 (211)
T cd03264 151 ILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKG 205 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999888753 699999999999885 69999999864
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=363.44 Aligned_cols=199 Identities=24% Similarity=0.291 Sum_probs=171.3
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFY 517 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~ 517 (1064)
..++++||++.|+ +..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...+++|||
T Consensus 6 ~~i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 6 APIDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred ceEEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 5799999999995 4689999999999999999999999999999999999999999999999975 235678999
Q ss_pred EecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 518 v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
+||++.++. .|++||+.+.............+++.++++.+++.+..++.+ .+||||||||++|||||+++
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~aL~~~ 156 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKV--------GELSGGMKRRLTLARALVND 156 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCch--------hhCCHHHHHHHHHHHHHhCC
Confidence 999998775 699999986332221111122356778999999988777765 38999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|+++||||||+|||+.++..+.+.+++ .|+|+|++||+++.+. .||+|++|+++
T Consensus 157 P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G 214 (306)
T PRK13537 157 PDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEG 214 (306)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999887765 4899999999999885 69999999875
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=371.76 Aligned_cols=187 Identities=28% Similarity=0.318 Sum_probs=162.9
Q ss_pred CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccc----cccEEEEecCCCCC
Q 001511 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDL----NKEIFYVPQRPYTA 525 (1064)
Q Consensus 456 ~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~l----r~~i~~v~Q~p~l~ 525 (1064)
+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .++ |+.++||||++.+|
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 35679999999999999999999999999999999999999999999999965 123 67899999999988
Q ss_pred c-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeC
Q 001511 526 V-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1064)
Q Consensus 526 ~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDE 604 (1064)
. .|++||+.++....+.......+++.++++.+||+++.+++|. +|||||||||+|||||+.+|+++||||
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~--------~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD--------ELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChh--------hCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 6 6999999986432222122245678899999999999999885 899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 605 CTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 605 PTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|||+||+.+++.+++.+.+ .|+|+|+||||++.+ +.||+|++|+++
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G 206 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAG 206 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999998887643 389999999999975 679999999864
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=358.61 Aligned_cols=196 Identities=26% Similarity=0.318 Sum_probs=166.2
Q ss_pred EEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-----cc----cccE
Q 001511 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----DL----NKEI 515 (1064)
Q Consensus 446 ~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~l----r~~i 515 (1064)
.++|+++.|. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .+ ++++
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 5678888884 5679999999999999999999999999999999999999999999999954 1 11 3579
Q ss_pred EEEecCCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 516 FYVPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 516 ~~v~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+|+||++.++ ..|+.||+.++...........++++.++++.+++.++.++.|. +||||||||++|||||+
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~Gq~qrv~lAral~ 176 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD--------ELSGGMQQRVGLARALA 176 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcc--------cCCHHHHHHHHHHHHHh
Confidence 9999999877 46999999875321111111234567889999999988888874 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
.+|++|||||||++||+.+++.+.+.+++ .|.|+|++||+++.+ ..||++++|+++
T Consensus 177 ~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G 237 (269)
T cd03294 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDG 237 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 99999999999999999999999887654 379999999999986 469999999864
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=346.19 Aligned_cols=200 Identities=26% Similarity=0.418 Sum_probs=171.8
Q ss_pred EEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 445 IEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 445 i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
++++||++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999964 3679999999999999999999999999999999999999999999999964 234678999
Q ss_pred EecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHc
Q 001511 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+||++.++..|+.||+.++... ...+++.+.++..++.++++.+|.+... ....+|||||||||+|||||+
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~------~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 154 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPG------MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALI 154 (237)
T ss_pred EcCCchhccchHHHHhhccCCC------CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9999998888999999875421 2344566677778888887776543221 245789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+..||++++|+++
T Consensus 155 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G 212 (237)
T cd03252 155 HNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKG 212 (237)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999988765 389999999999999889999999874
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=358.54 Aligned_cols=200 Identities=22% Similarity=0.311 Sum_probs=171.8
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc--------ccccc
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKE 514 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------~lr~~ 514 (1064)
..|+++||++.|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ++++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 4699999999997557899999999999999999999999999999999999999999999999641 34678
Q ss_pred EEEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 515 IFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 515 i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
++|+||+| .++..|++||+.++............+++.++++.+|+.++.++.+ .+||||||||++||||
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--------~~LS~G~~qrl~lara 155 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPT--------HCLSFGQKKRVAIAGV 155 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCc--------ccCCHHHHHHHHHHHH
Confidence 99999998 4677899999987533211111122356788999999998887766 4899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|+.+|++|||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G 218 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEG 218 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999998887653 3899999999999886 79999999865
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=341.62 Aligned_cols=193 Identities=22% Similarity=0.270 Sum_probs=169.0
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEec
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~Q 520 (1064)
|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ...++.++|+||
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEEC-CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 47899999995 4689999999999999999999999999999999999999999999999975 134568999999
Q ss_pred CCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
++.++ ..|++||+.++..... ..++++.++++.+++.+..++.+ .+||||||||++||||++.+|++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLG----IRKKRIDEVLDVVGLKDSAKKKV--------KGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHhhhH--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 99776 5799999987532211 24567888999999998888766 38999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .+|++++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g 202 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKG 202 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECC
Confidence 999999999999999999887764 4899999999999885 69999999864
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=351.93 Aligned_cols=198 Identities=23% Similarity=0.263 Sum_probs=168.1
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC-----ccEEEeCCCC-c-------c
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVG-S-------D 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~-----~G~I~i~g~~-~-------~ 510 (1064)
+++++||++.|+ +.++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+ . .
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 1 AIEIENLNLFYG-EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred CEEEEEEEEEEC-CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 378999999996 457999999999999999999999999999999999999998 9999999964 1 2
Q ss_pred ccccEEEEecCCCCCcccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHHHH
Q 001511 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 511 lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~----~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
.++.++|+||++.++..|+.||+.++...... ......+++.++++.+|+. +..++.+ .+|||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgG~~q 151 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSA--------LGLSGGQQQ 151 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCc--------ccCCHHHHH
Confidence 35789999999988779999999875322111 1112345678899999997 5566655 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|++|||||+.+|+++||||||++||+.++..+.+.+++. +.|+|+|||+++.+ ..+|++++|+++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 219 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDG 219 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999998887652 58999999999977 469999999874
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=357.15 Aligned_cols=199 Identities=25% Similarity=0.321 Sum_probs=171.3
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i~ 516 (1064)
+++++||++.|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 37899999999655679999999999999999999999999999999999999999999999964 12356799
Q ss_pred EEecCCC--CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 517 YVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 517 ~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
|+||+|. ++..|+.||+.++...........++++.++++.+++.++.++.|. +||||||||++|||||+
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~LS~G~~qrv~laral~ 152 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPK--------TLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcc--------cCCHHHHHHHHHHHHHH
Confidence 9999985 4567999999876432111111224567888999999988888774 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+..||+|++++++
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G 211 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRG 211 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECC
Confidence 99999999999999999999998887754 489999999999999889999999864
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=359.81 Aligned_cols=198 Identities=20% Similarity=0.305 Sum_probs=169.2
Q ss_pred EEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----------cc
Q 001511 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----------SD 510 (1064)
Q Consensus 445 i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----------~~ 510 (1064)
++++||++.|+++ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999642 469999999999999999999999999999999999999999999999954 13
Q ss_pred ccccEEEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHH
Q 001511 511 LNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRL 587 (1064)
Q Consensus 511 lr~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1064)
+++.||||||+| .++..|+.||+.++...........++++.++++.+|+. +..++.| .+||||||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~~LSgGq~qrv 154 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--------FQMSGGQMRKI 154 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCc--------ccCCHHHHHHH
Confidence 467899999998 467789999999864322111112345678899999996 6777766 38999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 588 aIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+|||||+.+|+++||||||++||+.++..+.+.+++ .|+|+|+|||+++.+ ..+|+|++|+++
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G 222 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEG 222 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999887764 389999999999987 579999999865
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=357.22 Aligned_cols=200 Identities=27% Similarity=0.367 Sum_probs=173.2
Q ss_pred CcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccE
Q 001511 443 NYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i 515 (1064)
..++++||++.|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.|
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 46899999999964 3579999999999999999999999999999999999999999999999964 1345789
Q ss_pred EEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+|+||+| .++..|+.||+.++............+++.++++.+|+.++.++.|. +||||||||++|||||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~LS~G~~qrv~laral 155 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPH--------RLSGGQKQRVAIAGVL 155 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcc--------cCCHHHHHHHHHHHHH
Confidence 9999998 45678999999876432211111234568889999999999888874 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+.+|++|||||||++||+.++..+.+.+++ .|+|+|++||+++.+..||+|++++++
T Consensus 156 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G 216 (279)
T PRK13635 156 ALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKG 216 (279)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECC
Confidence 999999999999999999999999888764 289999999999998889999999865
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=343.84 Aligned_cols=201 Identities=27% Similarity=0.432 Sum_probs=174.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
.|+++|+++.|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 48999999999654579999999999999999999999999999999999999999999999954 234678999
Q ss_pred EecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHc
Q 001511 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+||++.++..|+.||+.++... ...+++.++++.+++.++.+++|.+... ....+||||||||++|||||+
T Consensus 82 ~~q~~~~~~~tv~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~ 155 (229)
T cd03254 82 VLQDTFLFSGTIMENIRLGRPN------ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAML 155 (229)
T ss_pred ecCCchhhhhHHHHHHhccCCC------CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9999998888999999876432 2345677788888998888887643221 245689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+..||++++|+++
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g 213 (229)
T cd03254 156 RDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDG 213 (229)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCC
Confidence 99999999999999999999999888765 379999999999998889999999875
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=360.09 Aligned_cols=198 Identities=23% Similarity=0.281 Sum_probs=168.2
Q ss_pred EEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc----------c
Q 001511 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------D 510 (1064)
Q Consensus 445 i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~----------~ 510 (1064)
++++||++.|++. .++|+||||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+- .
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999642 4699999999999999999999999999999999999999999999999631 2
Q ss_pred ccccEEEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHH
Q 001511 511 LNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRL 587 (1064)
Q Consensus 511 lr~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1064)
.++.|+||||+| .++..|+.||+.++............+++.++++.++|. ++.++.| .+||||||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~~LSgGq~qrv 154 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSP--------FELSGGQMRRV 154 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCc--------ccCCHHHHHHH
Confidence 356899999998 567789999998764322111112235678899999996 5667766 38999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 588 aIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+|||||+.+|++|||||||++||+.++..+.+.+++ .|.|+|+|||+++.+ +.||+|++|+++
T Consensus 155 ~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G 222 (290)
T PRK13634 155 AIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKG 222 (290)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999998887754 389999999999987 479999999864
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=353.85 Aligned_cols=200 Identities=23% Similarity=0.262 Sum_probs=166.3
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-------- 508 (1064)
.+.|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 10 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 10 QPQIKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred ceeEEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 35799999999985 46799999999999999999999999999999999999985 89999999854
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
..+++.++|+||++.++..|++||+.++...........++++.++++.+++.+ ..++.+ .+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgG~~ 160 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPA--------LSLSGGQQ 160 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh--------hhCCHHHH
Confidence 124578999999998887999999987532111111112345778899998842 333333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+. .||++++|+++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G 229 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMG 229 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999888765 3799999999999874 69999999864
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=347.60 Aligned_cols=199 Identities=29% Similarity=0.394 Sum_probs=169.4
Q ss_pred cEEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--------cc
Q 001511 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DL 511 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~l 511 (1064)
+|+++|+++.|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 37899999999643 289999999999999999999999999999999999999999999999964 1 12
Q ss_pred cccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 512 NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 512 r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
++.++|+||++.++. .|+.||+.++............+++.++++.+++.+..++.+ .+||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la 152 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP--------AQLSGGQKQRVGIA 152 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh--------hhCCHHHHHHHHHH
Confidence 578999999998876 699999987532111111123456788999999998888776 38999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G 217 (233)
T cd03258 153 RALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKG 217 (233)
T ss_pred HHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999998887754 3899999999999875 69999999864
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=370.00 Aligned_cols=198 Identities=21% Similarity=0.335 Sum_probs=170.9
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEe
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVP 519 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~ 519 (1064)
.|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...++.|+|||
T Consensus 3 ~l~i~~l~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAYG-DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 489999999995 4679999999999999999999999999999999999999999999999964 12346799999
Q ss_pred cCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|++.++. .|++||+.++...........++++.++++.+++.++.++.|. +|||||||||+|||||+.+|+
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~--------~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPK--------ALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChh--------hCCHHHHHHHHHHHHHhcCCC
Confidence 9998875 6999999987532211111234578889999999998888884 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|||||||++||+.+++.+.+.+++ .|.|+|+|||+++.+. .||+|++|+++
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G 210 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAG 210 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999988776653 3899999999999764 69999999864
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=345.73 Aligned_cols=199 Identities=24% Similarity=0.290 Sum_probs=167.9
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC-----CCCccEEEeCCCC-c-------cc
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW-----PLVSGHIAKPGVG-S-------DL 511 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~-----~p~~G~I~i~g~~-~-------~l 511 (1064)
|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.+ . .+
T Consensus 1 i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYG-DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 47899999995 457999999999999999999999999999999999999 9999999999964 1 23
Q ss_pred cccEEEEecCCCCCcccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 512 NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 512 r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
++.++|+||++.++..|++||+.++........ ...++++.++++.+|+.+..++.+. ..+||||||||++||
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~~LSgG~~qrv~la 153 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH------ALGLSGGQQQRLCLA 153 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC------cccCCHHHHHHHHHH
Confidence 568999999998887899999987643221111 1124567889999999877666530 148999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||+.+|+++||||||++||+.+++.+.+.+++. ..|+|++||+++.+. .||++++|+++
T Consensus 154 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 216 (227)
T cd03260 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNG 216 (227)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999887653 379999999999875 69999999864
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=342.46 Aligned_cols=197 Identities=26% Similarity=0.354 Sum_probs=168.4
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc--------cccccEE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEIF 516 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------~lr~~i~ 516 (1064)
++++||++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+- ..++.++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 478999999964 6799999999999999999999999999999999999999999999999531 2457899
Q ss_pred EEecCCCCCc-ccHHHHhcCCCC-CCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~-~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
|+||++.++. .|+.||+.++.. ..........+++.++++.+++++..++.|. +||||||||++|||||+
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~la~al~ 151 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPA--------QLSGGQQQRVAIARALA 151 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCcc--------ccCHHHHHHHHHHHHHh
Confidence 9999998775 699999987532 1111111234567889999999888888774 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g 211 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDG 211 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999888764 4899999999999885 69999999864
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=353.96 Aligned_cols=198 Identities=19% Similarity=0.225 Sum_probs=166.1
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-------- 508 (1064)
...|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 11 ~~~l~i~nl~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 11 NIIISLQNVTISYG-TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred CceEEEEeEEEEEC-CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 45799999999995 4679999999999999999999999999999999999987 699999999853
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
.++++.++|+||++.++..|++||+.++...... ....++++.++++.+++.. ..++.+ .+||||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LS~G~~ 160 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGY-TGDMDELVERSLRKAAVWDECKDKLNESG--------YSLSGGQQ 160 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCC-cHHHHHHHHHHHHHhCCcchhhhhhCCCc--------ccCCHHHH
Confidence 1345689999999988878999999876432211 1122456677888888743 333333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~ 649 (1064)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+ ..||++++|++
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 999999999999999999999999999999999988865 378999999999877 57999999986
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=348.01 Aligned_cols=198 Identities=25% Similarity=0.357 Sum_probs=168.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v 518 (1064)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~ 79 (236)
T TIGR03864 1 ALEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVV 79 (236)
T ss_pred CEEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEe
Confidence 378999999996 4679999999999999999999999999999999999999999999999964 1223579999
Q ss_pred ecCCCC-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 519 PQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 519 ~Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
||++.+ +..|++||+.++............+++.++++.+|+.+..++.+ .+||||||||++|||||+.+|
T Consensus 80 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 80 FQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKV--------RELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred CCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCCh--------hhCCHHHHHHHHHHHHHhcCC
Confidence 999977 56799999986532211111123456778999999987777665 389999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+..+|++++|+++
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G 208 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRG 208 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCC
Confidence 99999999999999999998887753 389999999999998889999999864
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=340.70 Aligned_cols=200 Identities=31% Similarity=0.440 Sum_probs=176.1
Q ss_pred cEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEE
Q 001511 444 YIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~ 516 (1064)
.++++|+++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 47899999999753 579999999999999999999999999999999999999999999999964 23567899
Q ss_pred EEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHH
Q 001511 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL 593 (1064)
|+||++.++..|++||+.+... ...+++.++++.+++.++++++|.+... .+..+||||||||++|||||
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~-------~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGE-------YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred EECCCCccccchHHHHhCcCCC-------CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 9999999988999999975321 2456788899999999988877654332 35679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+..+|++++|+++
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g 213 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKG 213 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECC
Confidence 999999999999999999999999998875 378999999999999889999999874
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=340.55 Aligned_cols=201 Identities=30% Similarity=0.505 Sum_probs=174.2
Q ss_pred cEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEE
Q 001511 444 YIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~ 516 (1064)
.++++|+++.|+++ +++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ ...++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 47899999999643 579999999999999999999999999999999999999999999999964 12456899
Q ss_pred EEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHH
Q 001511 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL 593 (1064)
|+||++.++..|+.||+.++... ...+++.++++.+++.+..++.|.+..+ ....+||||||||++||||+
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al 155 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPL------ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL 155 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCC------CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH
Confidence 99999988878999999875321 2345677889999999988887753332 23568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.++..+.+.+++. +.|+|++||+++.++.||++++++++
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g 214 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSG 214 (220)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999988763 47999999999988899999999864
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=354.82 Aligned_cols=200 Identities=26% Similarity=0.380 Sum_probs=171.8
Q ss_pred CcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccE
Q 001511 443 NYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i 515 (1064)
.+++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.+
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 47999999999963 5689999999999999999999999999999999999999999999999964 1356789
Q ss_pred EEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+|+||+| .++..|++||+.++............+++.++++.+++.++.++.+ .+||||||||++|||||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral 157 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP--------QNLSGGQKQRVAIASVL 157 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc--------ccCCHHHHHHHHHHHHH
Confidence 9999998 4556799999987532211111112345778999999998888877 38999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.+++.+.+.+++ . ++|+|++||+++.+..||++++|+++
T Consensus 158 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G 218 (271)
T PRK13632 158 ALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEG 218 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECC
Confidence 999999999999999999999999888765 2 58999999999988889999999865
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=348.30 Aligned_cols=198 Identities=27% Similarity=0.389 Sum_probs=168.8
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-------cccccE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-------DLNKEI 515 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-------~lr~~i 515 (1064)
+++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . .+++.+
T Consensus 1 ~l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 1 MIEFKNVSKHFG-PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred CEEEEeEEEEEC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 378999999995 4679999999999999999999999999999999999999999999999954 1 235689
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCC-CCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~-~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+|+||++.++. .|+.||+.++... ........++++.++++.+|+++..++.| .+||||||||++|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrv~la~al 151 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP--------SELSGGQQQRVAIARAL 151 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh--------hhcCHHHHHHHHHHHHH
Confidence 99999998765 6999999875311 11111123456788999999988888776 38999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 212 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKG 212 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999998887754 4899999999999885 69999999864
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=348.58 Aligned_cols=197 Identities=28% Similarity=0.409 Sum_probs=167.0
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-----c-ccccEEE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----D-LNKEIFY 517 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~-lr~~i~~ 517 (1064)
++++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . . .+..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFG-GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEEC-CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 46899999996 4679999999999999999999999999999999999999999999999964 1 1 2457999
Q ss_pred EecCCCCCcc-cHHHHhcCCCCCCCcC----------CCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHH
Q 001511 518 VPQRPYTAVG-TLRDQLIYPLTSDQEV----------EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586 (1064)
Q Consensus 518 v~Q~p~l~~~-Ti~eni~~~~~~~~~~----------~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1064)
+||++.++.. |++||+.++....... .....+++.++++.+++.+..++.+ .+||||||||
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qr 151 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA--------GELSYGQQRR 151 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh--------hhCCHHHHHH
Confidence 9999988764 9999998754321110 1112346778999999988777766 3899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 587 laIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++|||||+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G 219 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQG 219 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999887764 4899999999999885 59999999864
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=351.20 Aligned_cols=197 Identities=27% Similarity=0.349 Sum_probs=168.0
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc---------------
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------------- 509 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------------- 509 (1064)
|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+-
T Consensus 1 i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFG-ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeC-CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 47899999996 46899999999999999999999999999999999999999999999998531
Q ss_pred ----cccccEEEEecCCCCCc-ccHHHHhcCCCCC-CCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHH
Q 001511 510 ----DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 510 ----~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~-~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGq 583 (1064)
.+++.++|+||++.++. .|+.||+.++... ........++++.++++.+++.+..++.|. +|||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~LS~G~ 151 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPA--------QLSGGQ 151 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChh--------hcCHHH
Confidence 23578999999998764 7999999874211 111111234567889999999988888773 899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+ ..+|++++|+++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 223 (252)
T TIGR03005 152 QQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKG 223 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999998887754 389999999999988 469999999864
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=358.64 Aligned_cols=199 Identities=28% Similarity=0.371 Sum_probs=172.0
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v 518 (1064)
.++++||++.|..++.+|+||||+|++||++|++||||||||||+|+|+|+..|++|+|.++|.+ .+.++++||+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 57889999999645789999999999999999999999999999999999999999999999965 2567899999
Q ss_pred ecCCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 519 PQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 519 ~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
||+|.++ ..|++||+.|....+.......++++.++++.++|.+..++.. .+||+|||||++||+||+++|
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~lS~G~kqrl~ia~aL~~~P 155 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKV--------RTLSGGMKQRLSIALALLHDP 155 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcch--------hhcCHHHHHHHHHHHHHhcCC
Confidence 9999865 4699999988544332221234578999999999997444333 489999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cC-cEEEEEccChhHHHh-cCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRA---MG-TSCITISHRPALVAF-HDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~---~g-~TvI~ItH~l~~i~~-~D~Il~l~~~ 650 (1064)
+++||||||+|||+.+...+.+.+++ .| +||+++||.++.+.. ||+|++++++
T Consensus 156 ~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 156 ELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDG 213 (293)
T ss_pred CEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999888765 35 899999999998875 9999999875
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=346.27 Aligned_cols=197 Identities=22% Similarity=0.287 Sum_probs=166.6
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------cc-ccccEEE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SD-LNKEIFY 517 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~-lr~~i~~ 517 (1064)
++++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .. .++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeC-CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 47899999995 4679999999999999999999999999999999999999999999999964 11 2457999
Q ss_pred EecCCCCCcc-cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 518 VPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 518 v~Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
+||++.++.. |++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+.+
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKA--------SSLSGGERRRVEIARALATN 151 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHHHHHhcC
Confidence 9999987765 99999987532211111122346778999999988777766 38999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+ ..+|++++|+++
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 209 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEG 209 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999998887754 489999999999765 569999999864
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=339.24 Aligned_cols=195 Identities=23% Similarity=0.317 Sum_probs=165.9
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEec
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~Q 520 (1064)
|+++|+++.|++ +. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 i~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 1 VRLDKIRFSYGE-QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred CEEEeEEEEeCC-Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 478999999963 33 39999999999999999999999999999999999999999999964 123467999999
Q ss_pred CCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
++.++. .|++||+.++...........++++.++++.+++.+..++.|. +||||||||++|||||+.+|++
T Consensus 78 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPG--------ELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred ccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcc--------cCCHHHHHHHHHHHHHhcCCCE
Confidence 998876 5999999876431111111235578899999999988888774 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 150 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 205 (211)
T cd03298 150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNG 205 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECC
Confidence 999999999999999999887754 3899999999999885 59999999864
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=359.65 Aligned_cols=199 Identities=25% Similarity=0.274 Sum_probs=169.1
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFY 517 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~ 517 (1064)
..|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|
T Consensus 3 ~~i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 3 VAIDLVGVSKSYG-DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred cEEEEEeEEEEeC-CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 3689999999995 4679999999999999999999999999999999999999999999999964 234678999
Q ss_pred EecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 518 VPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 518 v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
+||++.++. .|++||+.+.............+++.++++.+++.+..++.+ .+||||||||++|||||+.+
T Consensus 82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~--------~~LSgG~~qrv~la~al~~~ 153 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRV--------ALLSGGMKRRLTLARALIND 153 (303)
T ss_pred EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCch--------hhCCHHHHHHHHHHHHHhcC
Confidence 999998764 699999975322111111112345677899999988777766 38999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .||+|++|+++
T Consensus 154 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G 211 (303)
T TIGR01288 154 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESG 211 (303)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999887765 4899999999999885 69999999864
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=342.69 Aligned_cols=199 Identities=31% Similarity=0.426 Sum_probs=164.0
Q ss_pred cEEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---------ccc
Q 001511 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------SDL 511 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------~~l 511 (1064)
.|+++||++.|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 37899999999643 279999999999999999999999999999999999999999999999964 124
Q ss_pred cccEEEEecCCC--CC-cccHHHHhcCCCCCCCcCCC-CCHHH-HHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHH
Q 001511 512 NKEIFYVPQRPY--TA-VGTLRDQLIYPLTSDQEVEP-LTHGG-MVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 512 r~~i~~v~Q~p~--l~-~~Ti~eni~~~~~~~~~~~~-~~~~~-i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
++.++|+||++. ++ ..|++||+.++......... ...++ ..++++.+++. ++.++.+ .+|||||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~~q 152 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYP--------HELSGGQRQ 152 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCc--------hhcCHHHHH
Confidence 578999999993 33 57999999764321111010 11122 24788899985 5667666 389999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|++|||||+.+|+++||||||++||+.+++.+.+.+++ . |.|+|++||+++.+. .||++++|+++
T Consensus 153 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 222 (228)
T cd03257 153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAG 222 (228)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCC
Confidence 99999999999999999999999999999999887754 2 899999999999886 79999999864
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=349.77 Aligned_cols=198 Identities=25% Similarity=0.347 Sum_probs=167.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC--------------c
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--------------S 509 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--------------~ 509 (1064)
+++++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFH-GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 589999999996 4579999999999999999999999999999999999999999999999853 1
Q ss_pred cccccEEEEecCCCCCc-ccHHHHhcCCCCC-CCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHH
Q 001511 510 DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~-~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1064)
.+++.++|+||++.++. .|+.||+.++... .........+++.++++.+|+.+..++.+ .+||||||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~Gq~qrv 153 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYP--------RRLSGGQQQRV 153 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCCh--------hhCChHHHHHH
Confidence 23568999999998775 6999999864211 11111112346778899999987777665 48999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 588 aIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|||||+.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G 220 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQG 220 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 999999999999999999999999999999887754 4899999999999885 69999999864
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=354.33 Aligned_cols=199 Identities=25% Similarity=0.327 Sum_probs=170.8
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
.++++||++.|+++.++|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 58899999999755679999999999999999999999999999999999999999999999964 134568999
Q ss_pred EecCCC--CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 518 VPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 518 v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
+||+|. ++..|+.||+.++...........++++.++++.+++.+..++.|. +||||||||++|||||+.
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPH--------HLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcc--------cCCHHHHHHHHHHHHHHc
Confidence 999983 5678999999875422111111223567889999999988888774 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+|+++||||||++||+.+...+.+.+++ .|.|+|++||+++.+ +.||++++|+++
T Consensus 155 ~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 155 EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999998887753 389999999999988 579999999865
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=354.61 Aligned_cols=200 Identities=22% Similarity=0.290 Sum_probs=172.5
Q ss_pred CcEEEEeeEEEcCC-----CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------cc
Q 001511 443 NYIEFSGVKVVTPT-----GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SD 510 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~-----~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~ 510 (1064)
++++++|+++.|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 47999999999974 2579999999999999999999999999999999999999999999999954 12
Q ss_pred ccccEEEEecCCC--CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001511 511 LNKEIFYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1064)
Q Consensus 511 lr~~i~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1064)
+++.++|+||+|. ++..|+.+|+.++...........++++.++++.+|+.++.++.|. +||||||||++
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~LS~G~~qrv~ 154 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPH--------LLSGGQKQRVA 154 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcc--------cCCHHHHHHHH
Confidence 4678999999984 5566899999886432211111234568889999999999888874 89999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 589 IARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|||||+.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+..||++++|+++
T Consensus 155 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G 220 (280)
T PRK13633 155 IAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSG 220 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECC
Confidence 99999999999999999999999999999887754 389999999999998889999999864
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=347.73 Aligned_cols=198 Identities=27% Similarity=0.378 Sum_probs=167.7
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 518 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v 518 (1064)
++++||++.|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 4689999999643679999999999999999999999999999999999999999999999964 1345689999
Q ss_pred ecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChh--HHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY--LLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 519 ~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~--~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
||+|.++. .|++||+.++............+++.++++.+++.+ +.++.+ .+||||||||++|||||+.
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--------~~LS~G~~qrv~laral~~ 152 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYP--------HELSGGQQQRVGVARALAA 152 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcCh--------hhCCHHHHHHHHHHHHHhc
Confidence 99998775 699999987532211111123456788999999985 666665 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+ ..+|+|++|+++
T Consensus 153 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G 212 (242)
T cd03295 153 DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNG 212 (242)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999998887764 389999999999976 579999999875
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=346.44 Aligned_cols=184 Identities=29% Similarity=0.362 Sum_probs=163.5
Q ss_pred eeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------c---cc-cccEEEEecCCCC-Ccc
Q 001511 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------S---DL-NKEIFYVPQRPYT-AVG 527 (1064)
Q Consensus 459 ~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~---~l-r~~i~~v~Q~p~l-~~~ 527 (1064)
.-++|+||+|+.||+..|+|-||||||||+|++.||++|++|+|.++|.+ . ++ |+++++|||+.-+ |..
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 36899999999999999999999999999999999999999999999976 1 22 4789999999865 567
Q ss_pred cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001511 528 TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607 (1064)
Q Consensus 528 Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTS 607 (1064)
||.||..||....+..+.+.++++.++++.+||+.+.++||+ +|||||||||.|||||+.+|+||++|||+|
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~--------eLSGGMqQRVGLARAla~~~~IlLMDEaFS 193 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN--------ELSGGMQQRVGLARALANDPDILLMDEAFS 193 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc--------cccchHHHHHHHHHHHccCCCEEEecCchh
Confidence 999999999887766666677889999999999999999996 899999999999999999999999999999
Q ss_pred CCCHHHHHHHH----HHHHhcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 608 AVTTDMEERFC----AKVRAMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 608 aLD~~~~~~l~----~~l~~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
||||-.+.+++ ++.++.++|+++||||++.+ +..|||..|+++
T Consensus 194 ALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG 241 (386)
T COG4175 194 ALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDG 241 (386)
T ss_pred hcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCC
Confidence 99997665554 44556799999999999875 678999999865
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=341.92 Aligned_cols=198 Identities=24% Similarity=0.384 Sum_probs=170.0
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~ 516 (1064)
+.|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++
T Consensus 6 ~~i~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 6 PLLQLQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred ceEEEeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 4699999999995 4679999999999999999999999999999999999999999999999854 12457899
Q ss_pred EEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
|+||++.++..|++||+.++...... ...++++.++++.+++. ...++.+ .+||||||||++|||||+.
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQ--QPDPAIFLDDLERFALPDTILTKNI--------AELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCC--ChHHHHHHHHHHHcCCChHHhcCCc--------ccCCHHHHHHHHHHHHHhc
Confidence 99999998888999999874321111 12345677899999996 4666655 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGEG 651 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~g 651 (1064)
+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+..||++++|++.+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~ 214 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHA 214 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEeccc
Confidence 9999999999999999999998887654 3899999999999988999999997654
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=349.89 Aligned_cols=200 Identities=21% Similarity=0.211 Sum_probs=167.7
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-------- 508 (1064)
.+.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 11 ~~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYG-KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeC-CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 45799999999996 4579999999999999999999999999999999999986 589999999854
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCC-CcCCCCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHH
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~-~~~~~~~~~~i~~~l~~~~L~----~~~~~~p~~~~~~~g~~LSGGq 583 (1064)
..++++++|+||++.++..|++||+.++.... .......++++.++++.+++. +..++.+ .+|||||
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~Gq 161 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSG--------YSLSGGQ 161 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCC--------CCCCHHH
Confidence 12467899999999888899999998753221 111112245678899999984 3344443 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+. .+|++++|+++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 231 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLG 231 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999888765 3789999999999874 69999999864
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=330.37 Aligned_cols=199 Identities=26% Similarity=0.304 Sum_probs=175.8
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v 518 (1064)
++++.+++++|++...+++||||+++.||++||.|||||||||++|+|++++.|++|.|.+||.| ...|++||++
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 47899999999875569999999999999999999999999999999999999999999999976 3578999999
Q ss_pred ecCCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 519 PQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 519 ~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
+-+..++ ..|++|||.|.....+......++++.++.+.+++.+.+++.. .+||-||||||+|||||+++|
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv--------~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRV--------GEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHH--------hhhchhhHHHHHHHHHHhcCC
Confidence 9666555 4699999998655444444456788999999999999988865 389999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++++|||||||||..+...+.+.++ +.|+++|+.||.++.++ .||++++++++
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~G 209 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKG 209 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecC
Confidence 9999999999999999998877654 45999999999999997 79999999875
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=333.36 Aligned_cols=192 Identities=28% Similarity=0.438 Sum_probs=166.8
Q ss_pred EEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEec
Q 001511 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q 520 (1064)
++++||++.|++. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+|+||
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------~i~~~~q 73 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------SIAYVSQ 73 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------EEEEEec
Confidence 4789999999754 3799999999999999999999999999999999999999999999998 6999999
Q ss_pred CCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHccCC
Q 001511 521 RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 521 ~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
+|.++..|++||+.++... .+++..++++.+++.+.++..|.+..+ ....+||||||||++|||||+.+|
T Consensus 74 ~~~l~~~t~~enl~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 74 EPWIQNGTIRENILFGKPF-------DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred CchhccCcHHHHhccCCCc-------CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999986421 234566778888998888877653321 345789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHH---hcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCA-KVR---AMGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~-~l~---~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+++||||||++||+.+.+.+.+ +++ +.|.|+|++||+++.+..+|++++|+++
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G 203 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCC
Confidence 9999999999999999988876 343 2479999999999998889999999864
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=347.15 Aligned_cols=202 Identities=21% Similarity=0.228 Sum_probs=167.0
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC---CCccEEEeCCCC------cccccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---LVSGHIAKPGVG------SDLNKE 514 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~---p~~G~I~i~g~~------~~lr~~ 514 (1064)
.++++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ ...++.
T Consensus 2 ~~~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYG-KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEEC-CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 478999999996 4689999999999999999999999999999999999984 699999999964 134678
Q ss_pred EEEEecCCCCCcccHHHHhcCCCCCCCcC--CCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 515 IFYVPQRPYTAVGTLRDQLIYPLTSDQEV--EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 515 i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~--~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
++|+||++.++..|++||+.++....... ....++++.++++.+++.+.+..... ..+.+||||||||++||||
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~~~LS~G~~qrv~lara 156 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLK----QNALALSGGQQQRLCIARA 156 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhc----CCcccCCHHHHHHHHHHHH
Confidence 99999999988899999998753221111 11234567789999999643321110 1235899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|+.+|+++||||||++||+.++..+.+.+++ .+.|+|+|||+++.+. .+|++++|+++
T Consensus 157 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 217 (246)
T PRK14269 157 LAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLG 217 (246)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECC
Confidence 9999999999999999999999999888765 4899999999999774 79999999864
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=341.05 Aligned_cols=200 Identities=30% Similarity=0.464 Sum_probs=173.1
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 518 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v 518 (1064)
++++|+++.|++++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 4789999999755679999999999999999999999999999999999999999999999964 1345679999
Q ss_pred ecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHcc
Q 001511 519 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 519 ~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
||++.++..|++||+.++... ..++++.+.++.+++.+..+.+|.+... .+..+||||||||++|||||+.
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~------~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~ 154 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPD------ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK 154 (236)
T ss_pred CCCChhhcchHHHHHhhcCCC------CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999886432 2344566778888888887777643222 2467899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+|+++||||||++||+.++..+.+.+++. |.|+|++||+++.+..||++++|+++
T Consensus 155 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g 211 (236)
T cd03253 155 NPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDG 211 (236)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999998887643 88999999999999889999999875
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=366.59 Aligned_cols=198 Identities=23% Similarity=0.310 Sum_probs=172.7
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .+++++++|
T Consensus 3 ~L~~~nls~~y~-~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFG-DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 589999999995 5789999999999999999999999999999999999999999999999964 245678999
Q ss_pred EecCCCC-CcccHHHHhcCCCCCC--Cc--CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 518 VPQRPYT-AVGTLRDQLIYPLTSD--QE--VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 518 v~Q~p~l-~~~Ti~eni~~~~~~~--~~--~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
|+|++.+ +..|++||+.++...+ .. ......+++.++++.+++.++.++.+ .+||||||||++||||
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~--------~~LSgGerQRv~IArA 153 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV--------TSLSGGERQRVLLARA 153 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHHHHHH
Confidence 9999987 5689999998864321 00 01223567889999999999888866 3899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|+++|++|||||||++||+.++.++++.+++ .|+|+|++||+++.+ +.||++++|+++
T Consensus 154 L~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADG 215 (402)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999998887764 489999999999998 579999999875
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=340.88 Aligned_cols=195 Identities=22% Similarity=0.342 Sum_probs=164.3
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------cc-ccccEEE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SD-LNKEIFY 517 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~-lr~~i~~ 517 (1064)
|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .+ .++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYG-KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecC-CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 47899999995 4579999999999999999999999999999999999999999999999954 11 2567999
Q ss_pred EecCCCCCcc-cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhc-CChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 518 VPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNV-DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 518 v~Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~-~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
+||++.++.. |++||+.++..... .....+++.++++.+ ++.+..++.+ .+||||||||++|||||+.
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~ 149 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLA--------GTLSGGEQQMLAIARALMS 149 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCch--------hhCCHHHHHHHHHHHHHhc
Confidence 9999987764 99999987643221 112344566777777 4666666655 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+ ..||++++|+++
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 208 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERG 208 (222)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCC
Confidence 9999999999999999999999888764 479999999999986 469999999864
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=348.35 Aligned_cols=200 Identities=21% Similarity=0.262 Sum_probs=169.2
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc------------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------------ 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~------------ 509 (1064)
.+.++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+-
T Consensus 3 ~~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 3 ENKLNVIDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred CccEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 35799999999996 46799999999999999999999999999999999999999999999999531
Q ss_pred -------cccccEEEEecCCCCCc-ccHHHHhcCCCC-CCCcCCCCCHHHHHHHHHhcCChhHH-hcCCCCcccCCCCCc
Q 001511 510 -------DLNKEIFYVPQRPYTAV-GTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLEYLL-DRYPPEKEINWGDEL 579 (1064)
Q Consensus 510 -------~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~-~~~~~~~~~~~~i~~~l~~~~L~~~~-~~~p~~~~~~~g~~L 579 (1064)
.+++.++|+||++.++. .|++||+.++.. .........++++.++++.+|+.+.. ++.+ .+|
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~~L 153 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYP--------VHL 153 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCc--------ccC
Confidence 23568999999998876 599999986421 11111112345678899999998764 5555 489
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||||||++|||||+.+|+++||||||++||+.+++.+.+.+++ .|+|+|+|||+++.+. .||+|++++++
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 228 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 99999999999999999999999999999999999999887654 4899999999999887 59999999864
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=367.21 Aligned_cols=184 Identities=26% Similarity=0.329 Sum_probs=158.7
Q ss_pred eeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-----c----ccccEEEEecCCCCCc-c
Q 001511 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----D----LNKEIFYVPQRPYTAV-G 527 (1064)
Q Consensus 459 ~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~----lr~~i~~v~Q~p~l~~-~ 527 (1064)
.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . + .+++++||||++.++. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 48999999999999999999999999999999999999999999999964 1 1 1357999999998875 6
Q ss_pred cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001511 528 TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607 (1064)
Q Consensus 528 Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTS 607 (1064)
|++||+.++...........++++.++++.+|+.++.+++|. +||||||||++|||||+.+|++|||||||+
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~--------~LSgGq~QRv~LArAL~~~P~iLLLDEPts 193 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD--------ELSGGMRQRVGLARALAINPDILLMDEAFS 193 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcc--------cCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 999999986432211111234578889999999999898884 899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 608 AVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 608 aLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+||+.+++.+++.+++ .|+|+|+|||+++.+ +.+|+|++|+++
T Consensus 194 ~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G 241 (400)
T PRK10070 194 ALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNG 241 (400)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999998887753 489999999999987 469999999864
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=361.31 Aligned_cols=199 Identities=25% Similarity=0.293 Sum_probs=170.5
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFY 517 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~ 517 (1064)
..|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.|||
T Consensus 40 ~~i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~ 118 (340)
T PRK13536 40 VAIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGV 118 (340)
T ss_pred eeEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEE
Confidence 4699999999995 5679999999999999999999999999999999999999999999999965 235678999
Q ss_pred EecCCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 518 VPQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 518 v~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
+||++.++ ..|+.||+.+.............+++.++++.+++.+..++.+ .+||||||||++|||||+++
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~--------~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARV--------SDLSGGMKRRLTLARALIND 190 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCCh--------hhCCHHHHHHHHHHHHHhcC
Confidence 99999875 5699999985322111111112345678899999988777766 38999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|+++||||||+|||+.++..+.+.+++ .|+|+|++||+++.+. .||+|++|+++
T Consensus 191 P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G 248 (340)
T PRK13536 191 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAG 248 (340)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999988765 4899999999999885 69999999875
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=351.72 Aligned_cols=198 Identities=23% Similarity=0.270 Sum_probs=167.7
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc--------cccccE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEI 515 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------~lr~~i 515 (1064)
+|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- .+++.+
T Consensus 1 ml~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRYQ-DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEcC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 378999999996 46799999999999999999999999999999999999999999999999641 235689
Q ss_pred EEEecCCC--CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+|+||++. ++..|+.+|+.++............+++.++++.+++.++.++.+ .+||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrl~laraL 151 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPI--------QCLSHGQKKRVAIAGAL 151 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCc--------hhCCHHHHHHHHHHHHH
Confidence 99999985 456789999987532211111112345778999999988877765 48999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.++..+.+.+++ .|.|+|+|||+++.+ ..+|++++|+++
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G 212 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQG 212 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999998887764 489999999999988 469999999874
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=352.04 Aligned_cols=199 Identities=25% Similarity=0.357 Sum_probs=170.0
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc--------cccccE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEI 515 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------~lr~~i 515 (1064)
+++++||++.|++++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- .+++.|
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 378999999997556799999999999999999999999999999999999999999999999541 245789
Q ss_pred EEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+|+||+| .++..|+.||+.++............+++.++++.+++.++.++.| .+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--------~~LS~Gq~qrv~laral 152 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPP--------HHLSGGQKKRVAIAGIL 152 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCCh--------hhCCHHHHHHHHHHHHH
Confidence 9999998 4667899999987532211111122356788999999988888776 38999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G 213 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDG 213 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999887764 3899999999999876 69999999864
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=338.56 Aligned_cols=192 Identities=26% Similarity=0.331 Sum_probs=164.1
Q ss_pred EEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----c-----cccccEE
Q 001511 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----S-----DLNKEIF 516 (1064)
Q Consensus 447 ~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~-----~lr~~i~ 516 (1064)
++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.++
T Consensus 1 i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFG-DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEEC-CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 468999886 4679999999999999999999999999999999999999999999999964 0 1356899
Q ss_pred EEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
|++|++.++. .|++||+.++............+++.++++.+++.+..++.+ .+||||||||++|||||+.
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI--------YELSGGEQQRVALARAILK 151 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCCh--------hhCCHHHHHHHHHHHHHHc
Confidence 9999998876 699999987532211111123456788999999988877766 3899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEE
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSL 647 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l 647 (1064)
+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+..||++++|
T Consensus 152 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 152 DPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999988765 389999999999988889999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=350.39 Aligned_cols=199 Identities=25% Similarity=0.376 Sum_probs=168.8
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--------cccc
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S--------DLNK 513 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~--------~lr~ 513 (1064)
..|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 6 NLVDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred ceEEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4799999999995 5679999999999999999999999999999999999999999999999854 1 1356
Q ss_pred cEEEEecCCCCCcc-cHHHHhcCCCCCCC-cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001511 514 EIFYVPQRPYTAVG-TLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1064)
Q Consensus 514 ~i~~v~Q~p~l~~~-Ti~eni~~~~~~~~-~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1064)
.++|+||++.++.. |+.||+.++..... .......+++.++++.+++.+..++.|. +||||||||++|||
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~LSgGq~qrv~lar 156 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPS--------ELSGGMARRAALAR 156 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChh--------hCCHHHHHHHHHHH
Confidence 79999999988764 99999986532111 1111123467788999999888887763 89999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 592 AL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||+.+|+++||||||++||+.+++.+.+.+++ .|.|+|+|||+++.+. .||++++|+++
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G 220 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADK 220 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECC
Confidence 99999999999999999999999998887754 2799999999998775 69999999864
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=352.51 Aligned_cols=200 Identities=27% Similarity=0.384 Sum_probs=172.0
Q ss_pred CcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCc---cEEEeCCCC------cccc
Q 001511 443 NYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS---GHIAKPGVG------SDLN 512 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~---G~I~i~g~~------~~lr 512 (1064)
..|+++|+++.|++ .+++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.+ ...+
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 47999999999964 3579999999999999999999999999999999999999987 899999964 1345
Q ss_pred ccEEEEecCCC--CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 513 KEIFYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 513 ~~i~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
++++|+||+|. ++..|+.||+.++...........++++.++++.+++.++.++.|. +||||||||++||
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~--------~LS~G~~qrv~la 155 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPA--------NLSGGQKQRVAIA 155 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcc--------cCCHHHHHHHHHH
Confidence 78999999984 5678999999876432211111223567889999999998888874 8999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|||+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+..||++++|+++
T Consensus 156 ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G 219 (282)
T PRK13640 156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDG 219 (282)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 999999999999999999999999998887754 389999999999999899999999864
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=353.63 Aligned_cols=199 Identities=26% Similarity=0.349 Sum_probs=168.0
Q ss_pred cEEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc----------
Q 001511 444 YIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------- 509 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~---------- 509 (1064)
.|+++||++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+-
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 47899999999632 4699999999999999999999999999999999999999999999999641
Q ss_pred cccccEEEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHH
Q 001511 510 DLNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 586 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1064)
..++.++|+||+| .++..|+.||+.++............+++.++++.+++. ++.++.+ .+||||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--------~~LSgGq~qr 153 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSP--------FELSGGQMRR 153 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCc--------ccCCHHHHHH
Confidence 2356899999998 466789999998753221111112345678899999997 6777766 4899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 587 laIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
++|||||+.+|++|||||||++||+.++..+.+.+++ .|.|+|++||+++.+ ..||++++|+++
T Consensus 154 l~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G 221 (287)
T PRK13641 154 VAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHG 221 (287)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999998887764 489999999999987 479999999864
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=348.56 Aligned_cols=201 Identities=21% Similarity=0.233 Sum_probs=164.3
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCC--------c
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG--------S 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~--------~ 509 (1064)
+.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ .
T Consensus 9 ~~l~i~~v~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 9 TVLRTENLNVYYG-SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred eEEEEeeeEEEEC-CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 4799999999995 4579999999999999999999999999999999999986 489999999953 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
.+++.++|+||++.++..|+.||+.++...... ....++++.++++.+++.+.+..... ....+||||||||++|
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~----~~~~~LSgGq~qrv~l 162 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGY-KGDMDELVERSLRQAALWDEVKDKLK----QSGLSLSGGQQQRLCI 162 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCc-chHHHHHHHHHHHHhCchhhHHHHhc----CCcccCCHHHHHHHHH
Confidence 236689999999988878999999886432211 11223556677888888543221110 1234899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHH-HhcCEEEEEeC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALV-AFHDVVLSLDG 649 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i-~~~D~Il~l~~ 649 (1064)
||||+.+|+++||||||++||+.+++.+.+.+++. +.|+|++||+++.+ ..||++++|++
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~ 225 (264)
T PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNV 225 (264)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEec
Confidence 99999999999999999999999999998887652 68999999999976 57999999984
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=339.32 Aligned_cols=200 Identities=26% Similarity=0.417 Sum_probs=171.6
Q ss_pred EEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 445 i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
|+++|+++.|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999643 379999999999999999999999999999999999999999999999954 134678999
Q ss_pred EecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHHc
Q 001511 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+||++.++..|++||+.++... ...+++.+.++..++.++++.+|.+... ....+||||||||++|||||+
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 154 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPG------ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL 154 (234)
T ss_pred eCCCCeeccccHHHHhhccCCC------CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHh
Confidence 9999998889999999886432 1334566677778888887776533221 245689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+..||++++|+++
T Consensus 155 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G 212 (234)
T cd03251 155 KDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDG 212 (234)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCC
Confidence 99999999999999999999999988865 389999999999999889999999875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=350.53 Aligned_cols=199 Identities=23% Similarity=0.301 Sum_probs=170.6
Q ss_pred cEEEEeeEEEcCCC--CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccE
Q 001511 444 YIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~--~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i 515 (1064)
.++++||++.|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 68999999999742 469999999999999999999999999999999999999999999999964 1346789
Q ss_pred EEEecCCC--CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+|+||+|. ++..|+.||+.++............+++.++++.+++.++.++.|. +||||||||++|||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~lAraL 155 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPA--------RLSGGQKQRVAVAGII 155 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcc--------cCCHHHHHHHHHHHHH
Confidence 99999983 5678999999875332111111123457789999999988888763 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+..+|+|++|+++
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G 216 (277)
T PRK13642 156 ALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAG 216 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 999999999999999999999999887753 389999999999998889999999864
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=344.78 Aligned_cols=199 Identities=23% Similarity=0.256 Sum_probs=165.4
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC--C---CccEEEeCCCC--------c
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVG--------S 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~--p---~~G~I~i~g~~--------~ 509 (1064)
+.|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+ .
T Consensus 3 ~~l~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFG-KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 4689999999996 4679999999999999999999999999999999999986 4 69999999954 1
Q ss_pred cccccEEEEecCCCCCc-ccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHH
Q 001511 510 DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGq 583 (1064)
.+++.++|+||++.++. .|++||+.++....... ....++++.++++.+++.+. .++.+ .+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~ 153 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNA--------MELSGGQ 153 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc--------CcCCHHH
Confidence 24678999999998876 69999998653221111 11223567788999998643 23323 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.++..+.+.+++. +.|+|++||+++.+ ..||++++|+++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMG 223 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999999998887653 78999999999987 579999999864
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=349.17 Aligned_cols=200 Identities=26% Similarity=0.330 Sum_probs=170.8
Q ss_pred CcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccE
Q 001511 443 NYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i 515 (1064)
+.++++|+++.|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.+
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 469999999999753 469999999999999999999999999999999999999999999999964 1346789
Q ss_pred EEEecCCC--CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+|+||+|. ++..|+.+|+.++............+++.++++.+++.++.++.+ .+||||||||++||||+
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral 157 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEP--------NALSGGQKQRVAIAGVL 157 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCc--------ccCCHHHHHHHHHHHHH
Confidence 99999984 456689999987643221111122456778999999988887766 38999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+..+|+|++|+++
T Consensus 158 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G 218 (269)
T PRK13648 158 ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKG 218 (269)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECC
Confidence 999999999999999999999998887754 379999999999988889999999864
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=335.62 Aligned_cols=195 Identities=22% Similarity=0.312 Sum_probs=166.4
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEec
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~Q 520 (1064)
++++||++.|+. .++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 ~~~~~l~~~~~~---~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 1 LALDKVRYEYEH---LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred CeEEeeeEEeCC---cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 468999999952 5689999999999999999999999999999999999999999999964 234678999999
Q ss_pred CCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
+|.++. .|+.||+.++...........++++.++++.+++++..++.|. +||||||||++||||++.+|++
T Consensus 78 ~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE--------QLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred cCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc--------cCCHHHHHHHHHHHHHhcCCCE
Confidence 998876 5999999865321111111234567889999999988888774 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .+|++++|+++
T Consensus 150 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g 205 (213)
T TIGR01277 150 LLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQG 205 (213)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECC
Confidence 999999999999999998887754 3799999999999875 69999999864
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=351.17 Aligned_cols=198 Identities=23% Similarity=0.309 Sum_probs=166.0
Q ss_pred EEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----------cc
Q 001511 445 IEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----------SD 510 (1064)
Q Consensus 445 i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----------~~ 510 (1064)
|+++||++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 7899999999642 469999999999999999999999999999999999999999999999954 12
Q ss_pred ccccEEEEecCC--CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHH
Q 001511 511 LNKEIFYVPQRP--YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRL 587 (1064)
Q Consensus 511 lr~~i~~v~Q~p--~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1064)
+++.|+|+||+| .++..|++||+.++............+.+.++++.+++. ++.++.+ .+||||||||+
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~~qrv 154 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNP--------FELSGGQMRRV 154 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCc--------ccCCHHHHHHH
Confidence 456899999998 567789999998753211111111234567788999996 4556655 48999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 588 aIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|||||+.+|++|||||||++||+.+++.+.+.+++ .|+|+|++||+++.+. .||++++|+++
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 221 (280)
T PRK13649 155 AIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKG 221 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999888764 4899999999999874 69999999864
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=345.76 Aligned_cols=200 Identities=27% Similarity=0.338 Sum_probs=170.4
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccE
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i 515 (1064)
...++++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++++.+
T Consensus 9 ~~~l~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 9 DTTFALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred CceEEEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 34799999999996 4689999999999999999999999999999999999999999999999964 2346689
Q ss_pred EEEecCCCCC-cccHHHHhcCCCCCC-C---cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 516 FYVPQRPYTA-VGTLRDQLIYPLTSD-Q---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 516 ~~v~Q~p~l~-~~Ti~eni~~~~~~~-~---~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
+|+||++.++ ..|+.||+.++.... . ......++++.++++.+++.++.++.|. +||||||||++||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrv~la 159 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD--------SLSGGERQRAWIA 159 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc--------cCCHHHHHHHHHH
Confidence 9999997654 459999998753211 0 0011234567889999999988888774 8999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||+.+|+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+. .||+|++|+++
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGG 224 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999998887754 3899999999999884 79999999864
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=344.59 Aligned_cols=198 Identities=24% Similarity=0.291 Sum_probs=165.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC------cccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG------SDLN 512 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~------~~lr 512 (1064)
.++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ ..++
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFG-QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEEC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 589999999996 46799999999999999999999999999999999999974 79999999964 2346
Q ss_pred ccEEEEecCCCC-CcccHHHHhcCCCCCCCc--CCCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHHH
Q 001511 513 KEIFYVPQRPYT-AVGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 513 ~~i~~v~Q~p~l-~~~Ti~eni~~~~~~~~~--~~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
+.|+|+||+|.+ +..|+.||+.++...... ......+++.++++.+++.+. .++.+ .+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgG~~q 153 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPA--------GKLSGGQQQ 153 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCc--------ccCCHHHHH
Confidence 789999999975 467999999875321111 111234567889999998642 34433 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+ ..||++++|+++
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 221 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKG 221 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 99999999999999999999999999999999888765 379999999999987 479999999864
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=352.34 Aligned_cols=200 Identities=24% Similarity=0.254 Sum_probs=166.7
Q ss_pred CcEEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----------
Q 001511 443 NYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------- 508 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------- 508 (1064)
+.|+++||++.|++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 569999999999653 259999999999999999999999999999999999999999999999853
Q ss_pred -ccccccEEEEecCCC--CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHH
Q 001511 509 -SDLNKEIFYVPQRPY--TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 509 -~~lr~~i~~v~Q~p~--l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
..+++.|+|+||+|. ++..|++||+.++............+++.++++.+++. ++.++.+ .+||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~--------~~LS~Gq~ 156 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSP--------FELSGGQK 156 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCCh--------hhCCHHHH
Confidence 124568999999983 56679999998753211111111234567788999994 5666655 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
||++|||||+.+|++|||||||++||+.+++.+.+.+++ .|+|+|+|||+++.+ +.||++++|+++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G 227 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEG 227 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999998887653 389999999999976 579999999874
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=347.49 Aligned_cols=200 Identities=19% Similarity=0.195 Sum_probs=167.8
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-------- 508 (1064)
.+.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 17 ~~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 17 EIKMRARDVSVFYG-EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CceEEEEeEEEEEC-CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 45799999999996 46799999999999999999999999999999999999975 89999999954
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCCCc--CCCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChH
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLG 582 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~--~~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGG 582 (1064)
..+++.++|+||+|.++..|+.||+.++...... ......+++.++++.+++.+. .++.+ .+||||
T Consensus 96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgG 167 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPG--------TGLSGG 167 (267)
T ss_pred HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCc--------ccCCHH
Confidence 1246789999999988878999999875321111 111124567889999999643 33333 489999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
||||++|||||+.+|++|||||||++||+.++..+.+.+++ .+.|+|++||+++.+ ..+|++++|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G 238 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLG 238 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999999999988865 368999999999988 468999999864
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=336.17 Aligned_cols=203 Identities=26% Similarity=0.429 Sum_probs=164.5
Q ss_pred CCcEEEEeeEEEcCCC--CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccc
Q 001511 442 ANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNK 513 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~--~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~ 513 (1064)
.+.++++|+++.|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4689999999999753 479999999999999999999999999999999999999999999999964 13457
Q ss_pred cEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcc---cCCCCCcChHHHHHHHHH
Q 001511 514 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE---INWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 514 ~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~---~~~g~~LSGGqrQRlaIA 590 (1064)
.++|+||++.++..|++||+.++.... ...++.+..+..++.++++.++.+.. .....+||||||||++||
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~------~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~la 162 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSC------SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIA 162 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCC------CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 899999999988889999998764321 11222222333334444444321111 112358999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|||+.+|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+..+|+|++|+++
T Consensus 163 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g 224 (226)
T cd03248 163 RALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGG 224 (226)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCC
Confidence 999999999999999999999999999988865 368999999999999889999999864
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=344.09 Aligned_cols=198 Identities=28% Similarity=0.382 Sum_probs=168.7
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
+|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLG-GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 488999999996 4679999999999999999999999999999999999999999999999954 124567999
Q ss_pred EecCCCC-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc--
Q 001511 518 VPQRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY-- 594 (1064)
Q Consensus 518 v~Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~-- 594 (1064)
+||++.+ +..|++||+.++...........++++.++++.+++.+..++.+ .+||||||||++|||||+
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGe~qrv~la~al~~~ 152 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDY--------PQLSGGEQQRVQLARVLAQL 152 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCc--------ccCCHHHHHHHHHHHHHhcc
Confidence 9999977 56799999987543211111123456788999999988877776 389999999999999999
Q ss_pred ----cCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 595 ----HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 595 ----~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .||+|++|+++
T Consensus 153 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 217 (258)
T PRK13548 153 WEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQG 217 (258)
T ss_pred cccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECC
Confidence 59999999999999999999998877653 4899999999999875 79999999864
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=362.80 Aligned_cols=186 Identities=27% Similarity=0.327 Sum_probs=160.1
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCC----C------cc---cc-ccEEEEecCC
Q 001511 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV----G------SD---LN-KEIFYVPQRP 522 (1064)
Q Consensus 457 ~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~----~------~~---lr-~~i~~v~Q~p 522 (1064)
...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. + .+ .| ++++||||++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 457899999999999999999999999999999999999999999999984 2 11 22 5799999999
Q ss_pred CCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001511 523 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1064)
Q Consensus 523 ~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1064)
.++. .|++||+.++............+++.++++.+|+.++.+++|. +||||||||++|||||+.+|++||
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~--------~LSgGq~QRV~LARALa~~P~ILL 187 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPG--------ELSGGMQQRVGLARAFAMDADILL 187 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChh--------hCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8876 7999999987432211111234577889999999998888884 899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 602 LDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 602 LDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
||||||+||+.++..+++.+.+ .++|+|+||||++.+ +.+|+|++|+++
T Consensus 188 lDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G 241 (382)
T TIGR03415 188 MDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGG 241 (382)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999998887653 389999999999986 679999999875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=345.82 Aligned_cols=200 Identities=22% Similarity=0.240 Sum_probs=165.9
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC--C---CccEEEeCCCCc-------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVGS------- 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~--p---~~G~I~i~g~~~------- 509 (1064)
...|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+-
T Consensus 10 ~~~l~i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 10 QEVYQINGMNLWYG-QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred CceEEEeeEEEEEC-CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 35799999999996 4579999999999999999999999999999999999987 3 699999999641
Q ss_pred -cccccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHH
Q 001511 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 510 -~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGq 583 (1064)
.+++.++|+||++.++..|++||+.++....... .....+++.++++.+++.+. .++.+ .+|||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~--------~~LS~Gq 160 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQA--------LSLSGGQ 160 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCc--------ccCCHHH
Confidence 3457899999999888889999998753221110 11123456778888888643 23322 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.++..+.+.+++. ++|+|+|||+++.+. .||++++|+++
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G 230 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMG 230 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999998887653 789999999999875 69999999864
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=347.18 Aligned_cols=200 Identities=26% Similarity=0.357 Sum_probs=165.6
Q ss_pred CcEEEEeeEEEcCC--------CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------
Q 001511 443 NYIEFSGVKVVTPT--------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------ 508 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~--------~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------ 508 (1064)
.+|+++||++.|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 46999999999952 2479999999999999999999999999999999999999999999999954
Q ss_pred ccccccEEEEecCCC--CC-cccHHHHhcCCCCCC-CcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHH
Q 001511 509 SDLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~--l~-~~Ti~eni~~~~~~~-~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGq 583 (1064)
...++.++|+||++. ++ ..|+.+|+.++.... ........+++.++++.+++. +..++.+ .+|||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G~ 154 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYP--------HMLAPGQ 154 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCc--------hhcCHHH
Confidence 122457999999984 33 358999987643211 111112345678899999994 6666655 3899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G 226 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQG 226 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999998887764 3899999999999987 59999999864
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=346.19 Aligned_cols=200 Identities=23% Similarity=0.267 Sum_probs=165.9
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCCc-------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~~------- 509 (1064)
.+.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+-
T Consensus 19 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 19 EHILEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred CceEEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 34799999999996 4679999999999999999999999999999999999864 7999999998541
Q ss_pred -cccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHH
Q 001511 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 510 -~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~----~~~~~~p~~~~~~~g~~LSGGq 583 (1064)
.+++.++|+||++.++..|+.||+.++........ ...++.+.++++.+++. +..++.+ .+|||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgGq 169 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSA--------LSLSGGQ 169 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCc--------ccCCHHH
Confidence 24678999999999888899999987532111111 11234567788888874 3344443 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.+++.+.+.+++. +.|+|++||+++.+. .||++++|+++
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G 239 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNG 239 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999998887653 689999999999764 79999999864
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=345.99 Aligned_cols=197 Identities=23% Similarity=0.277 Sum_probs=163.9
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCCc--------c
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS--------D 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~~--------~ 510 (1064)
.++++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+- .
T Consensus 4 ~l~i~~v~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYG-SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEEC-CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 589999999996 45799999999999999999999999999999999999974 799999999541 2
Q ss_pred ccccEEEEecCCCCCc-ccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001511 511 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 511 lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
+++.++|+||++.++. .|++||+.++...... .....++++.++++.+++.+ ..++.+ .+||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~~ 154 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPG--------GGLSGGQQ 154 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCc--------ccCCHHHH
Confidence 4578999999998776 6999999865322111 11123456778899998853 334433 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDG 649 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~ 649 (1064)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|+|||+++.+ +.||+|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~ 222 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNL 222 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEec
Confidence 999999999999999999999999999999999888765 368999999999987 57999999974
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=338.82 Aligned_cols=200 Identities=28% Similarity=0.448 Sum_probs=170.4
Q ss_pred EEEEeeEEEcCC--CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEE
Q 001511 445 IEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1064)
Q Consensus 445 i~~~nvs~~y~~--~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~ 516 (1064)
++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 468999999964 3579999999999999999999999999999999999999999999999954 12356799
Q ss_pred EEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHHH
Q 001511 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARAL 593 (1064)
|+||++.++..|++||+.++... ...+++.+.++..++.++.+.+|.+... ....+||||||||++|||||
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al 154 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPD------ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARAL 154 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCC------CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHH
Confidence 99999988888999999876432 1234556677778888777776543221 24568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+..||++++|+++
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G 213 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNG 213 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECC
Confidence 999999999999999999999999988765 489999999999998899999999875
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=342.91 Aligned_cols=199 Identities=22% Similarity=0.266 Sum_probs=165.1
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhccc---CCC--CccEEEeCCCCc--------
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL---WPL--VSGHIAKPGVGS-------- 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl---~~p--~~G~I~i~g~~~-------- 509 (1064)
++++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+ .+| ++|+|.++|.+-
T Consensus 2 ~~l~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 2 VKIDARDVNFWYG-DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred cEEEEEEEEEEEC-CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 4689999999995 46799999999999999999999999999999999997 455 599999999641
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGqr 584 (1064)
.+++.++|+||++.++..|+.||+.++....... ....++++.++++.+++.+. .++.+ .+||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~~ 152 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESA--------FALSGGQQ 152 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCc--------ccCCHHHH
Confidence 2356899999999888789999998753221111 11133567788999998643 33333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
||++|||||+.+|+++||||||++||+.+++.+.+.+++ .++|+|++||+++.+ ..||++++|+++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G 221 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMG 221 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECC
Confidence 999999999999999999999999999999999988865 378999999999987 569999999864
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=340.49 Aligned_cols=198 Identities=25% Similarity=0.347 Sum_probs=169.0
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc-------cccccEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~-------~lr~~i~ 516 (1064)
.|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+- ..++.++
T Consensus 2 ~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 2 ILYLEGLSVSFD-GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eEEEEeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 589999999996 46799999999999999999999999999999999999999999999999641 1245799
Q ss_pred EEecCCCCCcc-cHHHHhcCCCCCCC--------cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHH
Q 001511 517 YVPQRPYTAVG-TLRDQLIYPLTSDQ--------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587 (1064)
Q Consensus 517 ~v~Q~p~l~~~-Ti~eni~~~~~~~~--------~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1064)
|+||++.++.. |++||+.++..... ......++++.++++.+++.+..++.+ .+||||||||+
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Ge~qrv 152 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA--------GLLSHGQKQWL 152 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHH
Confidence 99999988865 99999987532110 000113456788999999988777766 48999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 588 aIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+||||++.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+. .||+|++++++
T Consensus 153 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 218 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQG 218 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999988875 3789999999999886 69999999864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=343.32 Aligned_cols=198 Identities=25% Similarity=0.299 Sum_probs=165.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCC--------cc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG--------SD 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~--------~~ 510 (1064)
.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ ..
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYG-NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEEC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 689999999995 4679999999999999999999999999999999999997 489999999964 12
Q ss_pred ccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHHHH
Q 001511 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 511 lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~----~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
+++.++|++|++.++..|++||+.++........ ...++++.++++.+++. +..++.+ .+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~Gq~q 154 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNA--------QAFSGGQQQ 154 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccCh--------hhCCHHHHH
Confidence 4678999999999888999999987532211111 11234677888888884 2333333 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|++|||||+.+|+++||||||++||+.+++.+.+.+++. +.|+|+|||+++.+. .+|+|++|+++
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G 222 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNG 222 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECC
Confidence 999999999999999999999999999999998887753 789999999999875 69999999864
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=353.55 Aligned_cols=198 Identities=22% Similarity=0.320 Sum_probs=170.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v 518 (1064)
.++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..+++.+||+
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~ 80 (301)
T TIGR03522 2 SIRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence 378999999995 5679999999999999999999999999999999999999999999999964 2346789999
Q ss_pred ecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 519 ~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
||++.++. .|+.||+.+.....+.......+++.++++.+|+.+..++.+ .+||||||||++|||||+++|
T Consensus 81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKI--------GQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCch--------hhCCHHHHHHHHHHHHHhcCC
Confidence 99998875 499999986432211111122456788999999998877766 489999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+++||||||++||+.+.+.+.+.+++. ++|+|++||+++.+. .||+|++|+++
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G 208 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKG 208 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999887653 799999999999775 69999999865
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=320.28 Aligned_cols=205 Identities=21% Similarity=0.252 Sum_probs=176.2
Q ss_pred cEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccccccEEEEecC
Q 001511 444 YIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQR 521 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~lr~~i~~v~Q~ 521 (1064)
.+.+++++.+|++. ..+|+|+|++|.+||.++++||||||||||+++++|+.+|+.|+|.+||.. ..-...=|.|||+
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 35678899999642 359999999999999999999999999999999999999999999999963 1112346899999
Q ss_pred CCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001511 522 PYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1064)
Q Consensus 522 p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1064)
+-++ ..|+.||+.|+....+..+....+.+.+.+..+||+++-++++. +||||||||+.|||||..+|++|
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~--------qLSGGmrQRvGiARALa~eP~~L 154 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIW--------QLSGGMRQRVGIARALAVEPQLL 154 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceE--------eecchHHHHHHHHHHhhcCcceE
Confidence 9764 57999999999876655544556678889999999999888874 89999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEccChhHHH-hcCEEEEEeCCCceEEe
Q 001511 601 ILDECTSAVTTDMEERFCAKV----RAMGTSCITISHRPALVA-FHDVVLSLDGEGEWRVH 656 (1064)
Q Consensus 601 iLDEPTSaLD~~~~~~l~~~l----~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~~~ 656 (1064)
+||||++|||.-+++++++++ ++.|+.+++|||+++.+- .++++++|+++.+.+++
T Consensus 155 lLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~ 215 (259)
T COG4525 155 LLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVE 215 (259)
T ss_pred eecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeE
Confidence 999999999999999988765 456999999999999875 58999999988766654
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=340.97 Aligned_cols=198 Identities=25% Similarity=0.354 Sum_probs=168.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc------------cc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------------DL 511 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~------------~l 511 (1064)
.++++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+- ..
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYG-AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEEC-CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 478999999995 46799999999999999999999999999999999999999999999998531 23
Q ss_pred cccEEEEecCCCCCc-ccHHHHhcCCC-CCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 512 NKEIFYVPQRPYTAV-GTLRDQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 512 r~~i~~v~Q~p~l~~-~Ti~eni~~~~-~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
++.++|+||++.++. .|+.||+.+.. ...........+++.++++.+|++++.++.|. +||||||||++|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~LS~G~~qrv~l 152 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPL--------HLSGGQQQRVAI 152 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChh--------hCCHHHHHHHHH
Confidence 568999999998875 59999997521 11111111124567889999999988888773 899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||+.+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g 217 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENG 217 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999998887764 4899999999999885 69999999864
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=340.61 Aligned_cols=197 Identities=27% Similarity=0.393 Sum_probs=168.5
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEec
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~Q 520 (1064)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 i~i~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFG-SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEEC-CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 47899999996 4579999999999999999999999999999999999999999999999965 123568999999
Q ss_pred CCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
+|.++. .|+.||+.+.............+++.++++.+++.++.++.+ .+|||||+||++|||||+.+|++
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP--------NQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh--------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 998886 499999987543211111123456788999999988877766 38999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+||||||++||+.+++.+.+.+++ . ++|+|++||+++.+ +.||++++++++
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g 207 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNG 207 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECC
Confidence 999999999999999999888764 2 79999999999986 469999999865
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=345.74 Aligned_cols=200 Identities=22% Similarity=0.238 Sum_probs=167.4
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCCc-------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~~------- 509 (1064)
...|+++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+-
T Consensus 18 ~~~l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 18 EIALSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CeEEEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 45799999999995 4689999999999999999999999999999999999996 5899999999641
Q ss_pred -cccccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHH
Q 001511 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 510 -~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGq 583 (1064)
..++.++|+||++.++..|++||+.++....... ....++++.++++.+++.+ ..++.+ .+|||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~--------~~LS~G~ 168 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSA--------LTLSGGQ 168 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCc--------ccCCHHH
Confidence 2367899999999888889999998763221111 1123456778899999853 333333 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+ ..||++++|+++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 238 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLG 238 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999999888765 378999999999987 579999999864
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=336.51 Aligned_cols=198 Identities=25% Similarity=0.422 Sum_probs=170.0
Q ss_pred EEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc---------ccc
Q 001511 445 IEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---------DLN 512 (1064)
Q Consensus 445 i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~---------~lr 512 (1064)
++++|+++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+- ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999998642 5799999999999999999999999999999999999999999999999641 245
Q ss_pred ccEEEEecCCCCCc-ccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 513 KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 513 ~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
+.++|+||+|.++. .|+.||+.++...... ......+++.++++.+++.+..++.|. +||||||||++||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~lS~G~~qrv~la 153 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPH--------NLSGGQKQRVAIA 153 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChh--------hCCHHHHHHHHHH
Confidence 78999999998876 6999999875322111 111123467889999999988888774 8999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|||+.+|+++||||||++||+.+++.+.+.+++ .++|+|++||+++....||+|++|+++
T Consensus 154 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g 217 (220)
T TIGR02982 154 RALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDG 217 (220)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECC
Confidence 999999999999999999999999988877653 489999999999988899999999864
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=331.88 Aligned_cols=198 Identities=18% Similarity=0.314 Sum_probs=167.7
Q ss_pred EEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c---------cccccE
Q 001511 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S---------DLNKEI 515 (1064)
Q Consensus 446 ~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~---------~lr~~i 515 (1064)
.+.|+.+.|+.+.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 577899999766789999999999999999999999999999999999999999999999864 1 134679
Q ss_pred EEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHHHH
Q 001511 516 FYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 516 ~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIARA 592 (1064)
+|++|+|.++..|++||+.++.. ...++..++++.+++.+.++..|.+..+ ....+||||||||++||||
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lara 154 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSP-------FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARA 154 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCc-------CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHH
Confidence 99999999888899999987632 1234556778888888777766543222 2356899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHH--H---HHhcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCA--K---VRAMGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~--~---l~~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
++.+|+++||||||++||+.+++.+.+ . +++.|.|+|++||+++.+..+|++++|+++
T Consensus 155 l~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G 217 (218)
T cd03290 155 LYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217 (218)
T ss_pred HhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCC
Confidence 999999999999999999999887776 3 334589999999999999899999999763
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=343.01 Aligned_cols=200 Identities=22% Similarity=0.260 Sum_probs=166.9
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCCc-------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS------- 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~~------- 509 (1064)
.+.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+-
T Consensus 4 ~~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 4 PPKMEARGLSFFYG-DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred CcEEEEeeeEEEEC-CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 35799999999995 4579999999999999999999999999999999999974 6899999999541
Q ss_pred -cccccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHH
Q 001511 510 -DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 510 -~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGq 583 (1064)
.+++.++|+||++.++..|+.||+.++....... .....+++.++++.+++.+. .++.+ .+|||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgGq 154 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESA--------LGLSGGQ 154 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc--------ccCCHHH
Confidence 2357899999999888789999998753211110 11234567788999998543 33333 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+ ..+|++++|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G 224 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMG 224 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999888765 378999999999987 469999999864
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=345.77 Aligned_cols=234 Identities=21% Similarity=0.240 Sum_probs=182.7
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-------- 508 (1064)
...|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 18 ~~~l~~~nl~~~~~-~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 18 HSVFEVEGVKVFYG-GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred CceEEEeeEEEEeC-CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 45899999999996 45799999999999999999999999999999999999863 69999999964
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHH
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGqr 584 (1064)
..+++.++|+||++.++..|+.||+.++...... ....++.+.++++.+++.+. .++.+ .+||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LSgGq~ 167 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGY-KGNLDELVEDSLRRAAIWEEVKDKLKEKG--------TALSGGQQ 167 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCc-hHHHHHHHHHHHHHcccchhhHHHhcCCc--------ccCCHHHH
Confidence 1246789999999988878999999875321111 11123456677888887532 33333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCCCceEEeecCCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGEGEWRVHDKRDG 661 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~~~~~~~~ 661 (1064)
||++|||||+.+|+++||||||++||+.+++.+.+.+++. +.|+|++||+++.+. .||++++|++.....
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~------- 240 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEY------- 240 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccc-------
Confidence 9999999999999999999999999999999999888753 789999999999874 799999997421000
Q ss_pred cccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhc
Q 001511 662 SSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAA 715 (1064)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~ 715 (1064)
.+..|++++.++.++.+.+ |.|+++++++..
T Consensus 241 ----------------------~~~~G~~~~~g~~~~~~~~-~~~~~~~~~~~~ 271 (274)
T PRK14265 241 ----------------------GKRRGKLVEFSPTEQMFGS-PQTKEAREYISG 271 (274)
T ss_pred ----------------------cccCceEEEeCCHHHHHhC-CCCHHHHHHhhh
Confidence 1122344444555565554 689998887653
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=335.70 Aligned_cols=196 Identities=21% Similarity=0.307 Sum_probs=166.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c---cccccEEEEe
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S---DLNKEIFYVP 519 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~---~lr~~i~~v~ 519 (1064)
+++++||++.|++ .. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.++|+|
T Consensus 1 ~l~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 77 (232)
T PRK10771 1 MLKLTDITWLYHH-LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLF 77 (232)
T ss_pred CeEEEEEEEEECC-cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEe
Confidence 3789999999963 32 49999999999999999999999999999999999999999999965 1 1246799999
Q ss_pred cCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|++.++. .|+.||+.++...........++++.++++.+|+++..++.|. +||||||||++||||++.+|+
T Consensus 78 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~laral~~~p~ 149 (232)
T PRK10771 78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG--------QLSGGQRQRVALARCLVREQP 149 (232)
T ss_pred cccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcc--------cCCHHHHHHHHHHHHHhcCCC
Confidence 9998876 5999999876321101111235678899999999998888884 899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .+|++++|+++
T Consensus 150 lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g 206 (232)
T PRK10771 150 ILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADG 206 (232)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999998887754 3889999999999875 69999999864
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=341.95 Aligned_cols=199 Identities=21% Similarity=0.209 Sum_probs=166.4
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCCc--------
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------- 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~~-------- 509 (1064)
+.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.+-
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 3 IKMESKNLNLWYG-EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred cEEEEEEeEEEEC-CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 4689999999996 46799999999999999999999999999999999999875 799999999641
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
..++.++|+||++.++..|++||+.++...... ......+++.++++.+++.+ ..++.+ .+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~~ 153 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSA--------LKLSGGQQ 153 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCc--------ccCCHHHH
Confidence 236789999999998889999999875322111 01122346678899998753 334433 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++||||++.+|+++||||||++||+.++..+.+.+++. +.|+|++||+++.+. .||++++++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G 222 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMG 222 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999998887653 689999999999875 69999999875
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=340.33 Aligned_cols=203 Identities=24% Similarity=0.337 Sum_probs=176.5
Q ss_pred CCCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccc
Q 001511 441 EANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNK 513 (1064)
Q Consensus 441 ~~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~ 513 (1064)
..+.|+++|+++.|++. +.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ .++++
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 35689999999999653 579999999999999999999999999999999999999999999999964 23567
Q ss_pred cEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCccc---CCCCCcChHHHHHHHHH
Q 001511 514 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 514 ~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~---~~g~~LSGGqrQRlaIA 590 (1064)
.++|++|+|.++.+|++||+..... ...+++.++++.+++.++++.+|.+... .++.+||||||||++||
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~la 168 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECK-------CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLA 168 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCC-------CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHH
Confidence 8999999999998999999864311 1345677788888999888888753332 35679999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|||+.+|+++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+..||+|++|+++
T Consensus 169 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G 230 (257)
T cd03288 169 RAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRG 230 (257)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECC
Confidence 999999999999999999999999999888765 489999999999999889999999864
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=342.63 Aligned_cols=199 Identities=21% Similarity=0.294 Sum_probs=164.0
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----c------c-
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----S------D- 510 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~------~- 510 (1064)
..++++||++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ - .
T Consensus 5 ~~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 5 PLLSVRGLTKLYGP-RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred ceEEEeeeEEEcCC-ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 46999999999964 679999999999999999999999999999999999999999999999964 1 1
Q ss_pred ---ccccEEEEecCCC--C-CcccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChH
Q 001511 511 ---LNKEIFYVPQRPY--T-AVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLG 582 (1064)
Q Consensus 511 ---lr~~i~~v~Q~p~--l-~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGG 582 (1064)
.++.++|+||++. + +..|+.+|+.++...... ......+++.++++.+++. +..++.+ .+||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~G 155 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLP--------TTFSGG 155 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCC--------ccCCHH
Confidence 2457999999984 3 235888888653211110 0012245677889999996 3566655 489999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||++|||||+.+|+++||||||++||+.+++.+.+.+++ .|.|+|+|||+++.+. .||+|++|+++
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g 228 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQG 228 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 99999999999999999999999999999999998887653 3899999999999986 69999999864
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=341.24 Aligned_cols=198 Identities=21% Similarity=0.325 Sum_probs=169.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
+++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYG-TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEEC-CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 478999999996 4689999999999999999999999999999999999999999999999964 134567999
Q ss_pred EecCCCCCcc-cHHHHhcCCCCCC----CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 518 VPQRPYTAVG-TLRDQLIYPLTSD----QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 518 v~Q~p~l~~~-Ti~eni~~~~~~~----~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
+||++.++.. |+.||+.++.... .......++++.++++.+++.++.++.+ .+||||||||++||||
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~lara 152 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL--------TDLSGGQRQRAFLAMV 152 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc--------ccCCHHHHHHHHHHHH
Confidence 9999987754 9999998753210 1111123456788999999988888776 3899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANG 214 (255)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999887754 4899999999999875 79999999864
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=340.96 Aligned_cols=199 Identities=23% Similarity=0.267 Sum_probs=165.1
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC--C---CccEEEeCCCC--------c
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVG--------S 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~--p---~~G~I~i~g~~--------~ 509 (1064)
+.++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|.+ .
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 4 PILQVSDLSVYYN-KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred ceEEEEeeEEEEC-CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4689999999996 4579999999999999999999999999999999999953 6 59999999954 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
.+++.++|+||++.++..|++||+.++....... ....++++.++++.+++.. ..++.+ .+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~~ 154 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSA--------LGLSGGQQ 154 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCc--------ccCCHHHH
Confidence 2467899999999988899999998653211111 1122456777888988753 334433 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+ ..||++++|+++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDG 223 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999988875 368999999999876 469999999875
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=340.98 Aligned_cols=199 Identities=22% Similarity=0.309 Sum_probs=167.9
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-----c-ccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----D-LNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~-lr~~i 515 (1064)
..++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . . .+..+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 4 PLLSVSGLMMRFG-GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred ceEEEeeEEEEEC-CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 3699999999995 4689999999999999999999999999999999999999999999999964 1 1 23469
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCC-------Cc--------CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCc
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSD-------QE--------VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDEL 579 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~-------~~--------~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~L 579 (1064)
+|+||++.++. .|+.||+.++.... .. ......+++.++++.+|+.+..++.+ .+|
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~L 154 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA--------GNL 154 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh--------hhC
Confidence 99999998876 59999998753210 00 00012245777899999988877766 389
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||||||++|||||+.+|+++||||||++||+.++..+.+.+.+ .|.|+|++||+++.+. .||++++++++
T Consensus 155 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 155 AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999998887753 3899999999999885 69999999865
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=328.84 Aligned_cols=187 Identities=26% Similarity=0.373 Sum_probs=160.9
Q ss_pred CCcEEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------cccccc
Q 001511 442 ANYIEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKE 514 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~ 514 (1064)
.+.++++|+++.|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .+.++.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 4 HGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 3569999999999753 479999999999999999999999999999999999999999999999964 234678
Q ss_pred EEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 515 IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 515 i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
|+|+||+|.++.+|++||+.+... ...+++.++++ +++.+ .+|||||+||++|||||+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-------~~~~~~~~~l~-------~~~~~--------~~LS~G~~qrv~laral~ 141 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-------YSDEEIYGALR-------VSEGG--------LNLSQGQRQLLCLARALL 141 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-------CCHHHHHHHhh-------ccCCC--------CcCCHHHHHHHHHHHHHh
Confidence 999999999988999999975321 23344555544 22323 489999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.+++.+.+.+++. |.|+|++||+++.+..+|++++|+++
T Consensus 142 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g 199 (207)
T cd03369 142 KRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAG 199 (207)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECC
Confidence 999999999999999999999999888753 89999999999998889999999864
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=341.45 Aligned_cols=197 Identities=21% Similarity=0.225 Sum_probs=164.2
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCCc--------cc
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGS--------DL 511 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~~--------~l 511 (1064)
-+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+- .+
T Consensus 6 ~~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 47899999995 4689999999999999999999999999999999999986 4799999999641 24
Q ss_pred cccEEEEecCCCCCcccHHHHhcCCCCCCCc--CCCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHHH
Q 001511 512 NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 512 r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~--~~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
++.++|+||++.++..|+.||+.++...... .....++++.++++.+++.+. .++.+ .+|||||||
T Consensus 85 ~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~Gq~q 156 (251)
T PRK14244 85 RAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSA--------FELSGGQQQ 156 (251)
T ss_pred hhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcCh--------hhCCHHHHH
Confidence 6789999999988888999999875221111 011233567788999998652 33333 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|++|||||+.+|+++||||||++||+.+++.+.+.+++ .++|+|+|||+++.+. .||++++|+++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G 224 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSG 224 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECC
Confidence 99999999999999999999999999999999888765 3799999999999875 69999999874
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=343.91 Aligned_cols=199 Identities=28% Similarity=0.430 Sum_probs=165.7
Q ss_pred cEEEEeeEEEcCC--------CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-----
Q 001511 444 YIEFSGVKVVTPT--------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S----- 509 (1064)
Q Consensus 444 ~i~~~nvs~~y~~--------~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~----- 509 (1064)
+|+++||++.|++ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 5899999999974 4689999999999999999999999999999999999999999999999964 1
Q ss_pred ---cccccEEEEecCCC--C-CcccHHHHhcCCCCCC-CcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcCh
Q 001511 510 ---DLNKEIFYVPQRPY--T-AVGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSL 581 (1064)
Q Consensus 510 ---~lr~~i~~v~Q~p~--l-~~~Ti~eni~~~~~~~-~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSG 581 (1064)
.+++.++|+||++. + +..|+.+|+.++.... ........+++.++++.+++. +..++.+ .+|||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--------~~LS~ 154 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRP--------PQLSG 154 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCC--------ccCCh
Confidence 24678999999983 3 3469999986542211 111112234678899999996 5666655 48999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||||++|||||+.+|++|||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .||++++|+++
T Consensus 155 Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G 228 (268)
T PRK10419 155 GQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNG 228 (268)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999998877653 3899999999999886 69999999864
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=340.20 Aligned_cols=198 Identities=21% Similarity=0.251 Sum_probs=164.8
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------cc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG--------SD 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~--------~~ 510 (1064)
.|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ ..
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFYG-DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEEC-CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 589999999996 45799999999999999999999999999999999999763 69999999964 12
Q ss_pred ccccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHHH
Q 001511 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 511 lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
+++.++|+||++.++..|+.||+.++....... ....++++.++++.+++.+ ..++.+ .+|||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LS~G~~q 153 (250)
T PRK14240 82 LRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSA--------LGLSGGQQQ 153 (250)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCC--------CCCCHHHHH
Confidence 467899999999887799999998753221111 1123456777888888753 334433 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .+|++++|+++
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G 221 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNG 221 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999999888765 3789999999999764 69999999864
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=344.28 Aligned_cols=200 Identities=21% Similarity=0.225 Sum_probs=164.2
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-------- 508 (1064)
.+.++++||++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 22 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 22 KVVFDTQNLNLWYG-EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred ceEEEEeeeEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 34799999999996 4579999999999999999999999999999999999987 699999999953
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHH
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~----~~~~~~p~~~~~~~g~~LSGGq 583 (1064)
..+++.++|+||++.++..|+.||+.++........ ...++.+.++++.+++. +..++.+ .+|||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--------~~LSgGe 172 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNA--------YGLSGGQ 172 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCc--------ccCCHHH
Confidence 124678999999999888899999987532111111 11123456677776543 3334433 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.+...+.+.+++. ++|+|++||+++.+. .||++++|+++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G 242 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNG 242 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999998887653 789999999999875 69999999864
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=352.69 Aligned_cols=186 Identities=25% Similarity=0.267 Sum_probs=159.7
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEEecCCCCCc-ccHH
Q 001511 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVPQRPYTAV-GTLR 530 (1064)
Q Consensus 457 ~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v~Q~p~l~~-~Ti~ 530 (1064)
++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..+++.++|+||++.++. .|++
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 4679999999999999999999999999999999999999999999999964 234678999999998775 5999
Q ss_pred HHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 001511 531 DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610 (1064)
Q Consensus 531 eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD 610 (1064)
||+.+............++++.++++.+++.+..++.+ .+||||||||++|||||+++|++|||||||++||
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 156 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPV--------GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLD 156 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 99987432211111123456888999999988777766 3899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 611 TDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 611 ~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+++.+.+.+++ .|+|+|++||+++.+. .||+|++|+++
T Consensus 157 ~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G 200 (302)
T TIGR01188 157 PRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHG 200 (302)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 9999998887754 4899999999999885 69999999864
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=336.14 Aligned_cols=194 Identities=25% Similarity=0.359 Sum_probs=162.9
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c------cccccEEE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEIFY 517 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~lr~~i~~ 517 (1064)
|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYG-QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeC-CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 47899999996 4679999999999999999999999999999999999999999999999854 1 12467999
Q ss_pred EecCCCCCcc-cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcC-ChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 518 VPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 518 v~Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~-L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
+||++.++.. |+.||+.++...... ...+...++++.++ +.+..++.+ .+||||||||++|||||+.
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~---~~~~~~~~~l~~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPR---RSRKIPDEIYELFPVLKEMLGRRG--------GDLSGGQQQQLAIARALVT 148 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCc---chHHHHHHHHHHHHhHHHHhhCCh--------hhCCHHHHHHHHHHHHHhc
Confidence 9999988764 999999875332111 12234466777776 455556655 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|+++||||||++||+.++..+.+.+.+ .|+|+|++||+++.+. .+|++++++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g 208 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERG 208 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999887764 3799999999999887 59999999865
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=337.48 Aligned_cols=198 Identities=23% Similarity=0.303 Sum_probs=167.1
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i~ 516 (1064)
.++++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 589999999995 4689999999999999999999999999999999999999999999999954 11356899
Q ss_pred EEecCCCCCc-ccHHHHhcCCCCCCC-cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLTSDQ-EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~-~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
|+||++.++. .|+.||+.++..... ......+.++.++++.+++.+..++.+ .+||||||||++|||||+
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG--------QSLSGGERRRVEIARALA 153 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcch--------hhCCHHHHHHHHHHHHHh
Confidence 9999998776 599999987532111 111123456788899999987766655 489999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+ ..||++++|+++
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G 213 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQG 213 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCC
Confidence 99999999999999999999988776653 589999999999765 579999999864
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=338.52 Aligned_cols=199 Identities=22% Similarity=0.234 Sum_probs=165.6
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC-----ccEEEeCCCC--------c
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVG--------S 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~-----~G~I~i~g~~--------~ 509 (1064)
+.++++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+ .
T Consensus 3 ~~l~~~~l~~~~~-~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 3 PKIKIRGVNFFYH-KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred ceEEEEEEEEEEC-CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 4689999999995 467999999999999999999999999999999999999997 6999999854 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGqr 584 (1064)
.+++.++|+||++.++..|+.||+.++....... ....++.+.++++.+++.+. .++.+ .+||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LS~Gq~ 153 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSG--------LALSGGQQ 153 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCc--------ccCCHHHH
Confidence 3467899999999988889999998754221111 11123456677888887543 33333 58999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .||++++|+++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G 222 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTG 222 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCC
Confidence 999999999999999999999999999999998887765 3799999999999876 58999999865
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=339.07 Aligned_cols=198 Identities=21% Similarity=0.264 Sum_probs=164.9
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC-------ccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------SDL 511 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-------~~l 511 (1064)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ ..+
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYG-ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEEC-CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 589999999996 46799999999999999999999999999999999999986 59999999853 134
Q ss_pred cccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHHHH
Q 001511 512 NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQR 586 (1064)
Q Consensus 512 r~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGqrQR 586 (1064)
++.++|+||++.++..|+.||+.++....... ....++++.++++.+++.+. .++.+ .+||||||||
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~LS~G~~qr 153 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHA--------FGLSGGQQQR 153 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCc--------ccCCHHHHHH
Confidence 67899999999888899999998753221111 11123456778888887532 33333 4899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 587 laIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++|||||+.+|+++||||||++||+.+...+.+.+++. +.|+|++||+++.+. .||++++|+++
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G 220 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMG 220 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999998887753 689999999999876 59999999865
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=339.37 Aligned_cols=197 Identities=30% Similarity=0.401 Sum_probs=167.9
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYV 518 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v 518 (1064)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 2 l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAG-GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 68999999995 4689999999999999999999999999999999999999999999999964 1335679999
Q ss_pred ecCCCC-CcccHHHHhcCCCCCC-C---cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 519 PQRPYT-AVGTLRDQLIYPLTSD-Q---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 519 ~Q~p~l-~~~Ti~eni~~~~~~~-~---~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
||++.+ +..|+.||+.++.... . ......++++.++++.+++.+..++.+ .+||||||||++||||+
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al 152 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM--------STLSGGERQRVHVARAL 152 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHHHHHHHHHHH
Confidence 999864 5679999998753211 0 001123456788999999988877766 38999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.+...+.+.+++ .|.|+|++||+++.+ ..||+|++|+++
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGG 213 (256)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999998887764 389999999999998 579999999864
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=328.66 Aligned_cols=192 Identities=27% Similarity=0.360 Sum_probs=165.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v 518 (1064)
+++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~ 79 (204)
T PRK13538 1 MLEARNLACERD-ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYL 79 (204)
T ss_pred CeEEEEEEEEEC-CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEe
Confidence 378999999995 4679999999999999999999999999999999999999999999999964 2346789999
Q ss_pred ecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 519 ~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
+|++.++. .|+.||+.++..... ...++++.++++.+|+.++.++.+ .+||||||||++||||++++|
T Consensus 80 ~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 80 GHQPGIKTELTALENLRFYQRLHG---PGDDEALWEALAQVGLAGFEDVPV--------RQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred CCccccCcCCcHHHHHHHHHHhcC---ccHHHHHHHHHHHcCCHHHhhCCh--------hhcCHHHHHHHHHHHHHhcCC
Confidence 99987664 699999987643211 124567888999999988877765 389999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEE
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSL 647 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l 647 (1064)
+++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+. +.++++++
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999887764 3899999999999885 55677766
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=339.40 Aligned_cols=198 Identities=22% Similarity=0.255 Sum_probs=164.6
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------c
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG--------S 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~--------~ 509 (1064)
+.++++||++.|+ ++++++|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|.+ .
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYYN-TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEEC-CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 4699999999995 46799999999999999999999999999999999999985 48999999864 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
.+++.++|+||++.++..|+.||+.++........ ...++.+.++++.+++.+ ..++.+ .+||||||
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LS~G~~ 156 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSA--------LGLSGGQQ 156 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCc--------ccCCHHHH
Confidence 24568999999998888999999986532111101 112345678889898853 333333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDG 649 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1064)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+. .||++++|+.
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~ 224 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFST 224 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEec
Confidence 999999999999999999999999999999999888765 3689999999999875 6999999974
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=342.97 Aligned_cols=200 Identities=23% Similarity=0.277 Sum_probs=166.1
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC-------c
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------S 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-------~ 509 (1064)
...++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ .
T Consensus 19 ~~~l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 19 APAMAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred CcEEEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 45789999999996 56899999999999999999999999999999999999986 79999999954 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGqr 584 (1064)
.+++.++|+||++.++..|++||+.++...... ......+.+.++++.+++.+. .++.+ .+||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~--------~~LSgGq~ 169 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSP--------FRLSGGQQ 169 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCc--------ccCCHHHH
Confidence 346789999999998889999999875321110 111122345677888888643 23333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++|||||+.+|+++||||||++||+.+++.+.+.+++. +.|+|++||+++.+. .+|++++|+++
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G 238 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDG 238 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999998887653 689999999999865 69999999864
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=338.37 Aligned_cols=199 Identities=22% Similarity=0.236 Sum_probs=164.9
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------c
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG--------S 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~--------~ 509 (1064)
..|+++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ .
T Consensus 5 ~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 5 IILSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred ceEEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 4799999999995 56799999999999999999999999999999999999763 48999999964 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGqr 584 (1064)
..++.++|+||++.++..|++||+.++........ ...++.+.++++.+++.+. .++. ..+||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~ 155 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDS--------ALSLSGGQQ 155 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcC--------hhhCCHHHH
Confidence 23567999999998888899999987643211111 1223457778888887532 2332 248999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++|||||+.+|+++||||||++||+.+++.+.+.+++. +.|+|++||+++.+. .+|++++|+++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G 224 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLG 224 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECC
Confidence 9999999999999999999999999999999998887652 689999999999885 69999999874
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=380.92 Aligned_cols=201 Identities=23% Similarity=0.302 Sum_probs=167.1
Q ss_pred CCcEEEEeeEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----------
Q 001511 442 ANYIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~---~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---------- 508 (1064)
.++|+++||++.|++ +.++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 357999999999963 2479999999999999999999999999999999999999999999998731
Q ss_pred ------c---ccc-ccEEEEecCC--CCC-cccHHHHhcCCCCCC-CcCCCCCHHHHHHHHHhcCCh---hHHhcCCCCc
Q 001511 509 ------S---DLN-KEIFYVPQRP--YTA-VGTLRDQLIYPLTSD-QEVEPLTHGGMVELLKNVDLE---YLLDRYPPEK 571 (1064)
Q Consensus 509 ------~---~lr-~~i~~v~Q~p--~l~-~~Ti~eni~~~~~~~-~~~~~~~~~~i~~~l~~~~L~---~~~~~~p~~~ 571 (1064)
. .+| +.||||||+| .++ ..|+.||+.++...+ ........+++.++++.+|+. +..+++|+
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~-- 167 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH-- 167 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc--
Confidence 0 122 4799999998 344 469999998764321 111112346788899999995 35677774
Q ss_pred ccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEE
Q 001511 572 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLS 646 (1064)
Q Consensus 572 ~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~ 646 (1064)
+|||||||||+|||||+.+|++|||||||++||+.+++++.+.+++ .|+|+|+||||++.+. .||+|++
T Consensus 168 ------~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~v 241 (623)
T PRK10261 168 ------QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241 (623)
T ss_pred ------cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 8999999999999999999999999999999999999998887654 3899999999999874 6999999
Q ss_pred EeCC
Q 001511 647 LDGE 650 (1064)
Q Consensus 647 l~~~ 650 (1064)
|+++
T Consensus 242 l~~G 245 (623)
T PRK10261 242 MYQG 245 (623)
T ss_pred eeCC
Confidence 9864
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=340.05 Aligned_cols=199 Identities=20% Similarity=0.244 Sum_probs=169.6
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIF 516 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~ 516 (1064)
..|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++
T Consensus 6 ~~l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 6 ARLRGEQLTLGYG-KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred cEEEEEEEEEEEC-CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 4799999999996 4679999999999999999999999999999999999999999999999964 13356799
Q ss_pred EEecCCCCCc-ccHHHHhcCCCCCC-C---cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLTSD-Q---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~-~---~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1064)
|+||++.++. .|+.||+.++.... . ......++++.++++.+++.++.++.+ .+||||||||++|||
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Gq~qrv~lar 156 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV--------DTLSGGQRQRAWIAM 156 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc--------ccCChHHHHHHHHHH
Confidence 9999998764 69999998753211 0 001122456788999999998888776 389999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 592 AL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|++.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+ ..||++++|+++
T Consensus 157 al~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 157 VLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREG 220 (265)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999998887754 388999999999976 579999999864
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=337.68 Aligned_cols=198 Identities=22% Similarity=0.310 Sum_probs=162.7
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----c---------
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----S--------- 509 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~--------- 509 (1064)
.|+++||++.|+ +..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ -
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 3 LLQVSGLSKSYG-GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred eEEEeeeEEEeC-CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 689999999995 4579999999999999999999999999999999999999999999999853 1
Q ss_pred -cccccEEEEecCCCC---CcccHHHHhcCCCC-CCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHH
Q 001511 510 -DLNKEIFYVPQRPYT---AVGTLRDQLIYPLT-SDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 510 -~lr~~i~~v~Q~p~l---~~~Ti~eni~~~~~-~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGq 583 (1064)
..++.++|++|++.. +..|+.+|+.+... .........++++.++++.+++. +..++.+ .+|||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--------~~LSgG~ 153 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLP--------RAFSGGM 153 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCc--------hhcCHHH
Confidence 123569999999852 33588888854211 00000112345778899999996 4666655 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.+++.+.+.+++ .|.|+|+|||+++.+. .+|++++|+++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G 225 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQG 225 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999999999998887653 3899999999999887 69999999864
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=334.91 Aligned_cols=197 Identities=18% Similarity=0.221 Sum_probs=165.0
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c------cccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~lr~~i 515 (1064)
.+++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 4 VMLSFDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred cEEEEEeEEEeeC-CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 3689999999985 4679999999999999999999999999999999999999999999999964 1 135679
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhc-CChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV-DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~-~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+|+||++.++. .|+.||+.++..... ....++++.++++.+ ++.+..++.+ .+||||||||++|||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al 152 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAE--RDQFQERIKWVYELFPRLHERRIQRA--------GTMSGGEQQMLAIGRAL 152 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccC--hhHHHHHHHHHHHHHHHHHHHHhCch--------hhCCHHHHHHHHHHHHH
Confidence 99999998876 599999987532111 111234566677777 4666555554 48999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+ +.||++++|+++
T Consensus 153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (237)
T PRK11614 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENG 213 (237)
T ss_pred HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCC
Confidence 999999999999999999999998887654 489999999999865 579999999864
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=344.63 Aligned_cols=200 Identities=21% Similarity=0.220 Sum_probs=165.8
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-------- 508 (1064)
.+.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+
T Consensus 37 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 37 KPHVVAKNFSIYYG-EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred ceEEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 45699999999995 4579999999999999999999999999999999999864 499999999954
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHH
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~----~~~~~~p~~~~~~~g~~LSGGq 583 (1064)
..+++.++|+||++.++..|+.||+.++........ ...++++.++++.+++. +..++.+ .+|||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LSgGq 187 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNA--------LGLSGGQ 187 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCCh--------hhCCHHH
Confidence 124678999999998887899999987532211111 11234567788888874 3334433 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.+.+.+.+.+++. +.|+|++||+++.+. .||++++|+++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G 257 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEG 257 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999888753 689999999999875 69999999864
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=325.59 Aligned_cols=188 Identities=28% Similarity=0.419 Sum_probs=163.5
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEEe
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v~ 519 (1064)
++++||++.|+ ++++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++++++|+|
T Consensus 1 l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERD-GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeC-CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 47899999985 4679999999999999999999999999999999999999999999999864 23567899999
Q ss_pred cCCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|++.++ ..|++||+.+.... ..++++.++++.+++.++.++.+ .+||||||||++|||||+.+|+
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHAD------HSDEQVEEALARVGLNGFEDRPV--------AQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred cccccCCCcCHHHHHHhhccc------ccHHHHHHHHHHcCChhhhcCch--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 999775 57999999875321 24567888999999988776655 4899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChh-HHHhcCEEEEE
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPA-LVAFHDVVLSL 647 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~-~i~~~D~Il~l 647 (1064)
++||||||++||+.+++.+.+.+++ .|.|+|++||+.. ....+++++++
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999988764 3899999999866 45678888876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=340.30 Aligned_cols=198 Identities=23% Similarity=0.306 Sum_probs=165.5
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-------- 508 (1064)
.+.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 37 ~~~l~i~~l~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 37 ETVIEARDLNVFYG-DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred CceEEEEEEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 45799999999995 4679999999999999999999999999999999999997 689999999854
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHHH
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~----~~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
..+++.++|+||++.++..|+.||+.++...... ....++++.++++.+++. +..++.+ .+||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~--------~~LSgGe~ 186 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGY-DGDIDERVEESLRRAALWDEVKDQLDSSG--------LDLSGGQQ 186 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCC-cHHHHHHHHHHHHHcCCCchhHHHHhCCc--------ccCCHHHH
Confidence 1346789999999988878999999875322111 112345688899999985 3344444 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEE-EEeC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVL-SLDG 649 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il-~l~~ 649 (1064)
||++|||||+.+|++|||||||++||+.+++.+.+.+++. +.|+|++||+++.+. .+|+++ +|++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~ 255 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTG 255 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeC
Confidence 9999999999999999999999999999999999888753 589999999999875 599976 4564
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=334.21 Aligned_cols=197 Identities=24% Similarity=0.362 Sum_probs=168.5
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEec
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~Q 520 (1064)
|+++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 l~~~~l~~~~~-~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYG-GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 46899999996 4579999999999999999999999999999999999999999999999964 123568999999
Q ss_pred CCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
++.++. .|+.||+.++...........++++.++++.+++.++.++.|. +||||||||++|||||+.+|++
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPS--------QLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChh--------hCCHHHHHHHHHHHHHhcCCCE
Confidence 998875 5999999865322111111234567889999999988888774 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .+|++++++++
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G 207 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKG 207 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 999999999999999999887754 3899999999999875 69999999864
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=335.83 Aligned_cols=198 Identities=24% Similarity=0.283 Sum_probs=162.5
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC--CCCccEEEeCCCC-c-----c-ccccE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVG-S-----D-LNKEI 515 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~--~p~~G~I~i~g~~-~-----~-lr~~i 515 (1064)
|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+. +|++|+|.++|.+ . . .+..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVE-DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEEC-CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 47899999996 467999999999999999999999999999999999994 7999999999964 1 1 23459
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCCc-------CCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQE-------VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQR 586 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~-------~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1064)
+|+||++.++. .|+.||+.+....... ......+++.++++.+++. +..++.+. .+||||||||
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------~~LS~G~~qr 152 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN-------EGFSGGEKKR 152 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc-------cCcCHHHHHH
Confidence 99999998765 4899998764221100 0011235678899999997 45555442 2599999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh--cCEEEEEeCC
Q 001511 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF--HDVVLSLDGE 650 (1064)
Q Consensus 587 laIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~--~D~Il~l~~~ 650 (1064)
++|||||+.+|+++||||||++||+.+++.+.+.+++ .|.|+|+|||+++.+.. +|++++|+++
T Consensus 153 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G 221 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDG 221 (243)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCC
Confidence 9999999999999999999999999999999888765 37999999999999864 7999999864
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=316.98 Aligned_cols=448 Identities=16% Similarity=0.155 Sum_probs=278.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC-CCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 161 HSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYT 239 (1064)
Q Consensus 161 ~~~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~-~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~ 239 (1064)
+.+.......+++. ...++|.++.+++..-|+.-+++ ....+..++++|+..++-.+.. +.....+.+ ..+.+
T Consensus 65 s~is~lg~t~~gq~----~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~-lp~~~qa~i-l~l~s 138 (546)
T COG4615 65 SLISQLGLTTLGQH----FIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSR-LPELVQAII-LTLGS 138 (546)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhh-hHHHHHHHH-HHHHH
Confidence 34445556666666 55566777788888888877765 3557889999999987633222 222222222 11222
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 001511 240 WRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKA 319 (1064)
Q Consensus 240 ~~l~~~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~ 319 (1064)
.....|+||++.+++.+.+.+..+.-.....+.-+.++...+.+.++......+.++.+..+. +++..+. ...+.+..
T Consensus 139 ~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l-~r~R~~~-~h~~~~~~ 216 (546)
T COG4615 139 AAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTL-NRERAEY-VHNNLYIP 216 (546)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhhee-chHHHHH-HHhhhcCc
Confidence 333456788888777655444433333333344444444455555555555666666666554 3333332 11222222
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 320 LTRHMRV-VLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSI 398 (1064)
Q Consensus 320 l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~ 398 (1064)
-.+..++ ....+.+......+.+..+...+++++++.... ++- .+- .+..+.. .+.-+-.|+.+...
T Consensus 217 ~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~-~w~----st~-~a~tivl------vlLflr~pL~s~vg 284 (546)
T COG4615 217 DAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL-GWA----STN-VAATIVL------VLLFLRTPLLSAVG 284 (546)
T ss_pred chHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccc----hhh-HHHHHHH------HHHHHhhHHHHHHh
Confidence 1222221 111111111111222222222333333321100 111 011 1111111 11122245555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEc
Q 001511 399 SSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITG 478 (1064)
Q Consensus 399 ~~~~l~~~~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG 478 (1064)
....+.++..+++++.++-..++....+. + +..+.-..|+++||.|.|++...-+..||++|++||+|-|+|
T Consensus 285 ilP~l~~AqvA~~kiakle~~~~~a~~~~-~-------q~~p~~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG 356 (546)
T COG4615 285 ILPTLLTAQVAFNKIAKLELAPYKADFPR-P-------QAFPDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIG 356 (546)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCccccCCC-C-------CcCCcccceeeeeeeeccCcccceecceeeEEecCcEEEEEC
Confidence 66677888999999988644222111110 0 111223469999999999876677889999999999999999
Q ss_pred CCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHH
Q 001511 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 552 (1064)
Q Consensus 479 ~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~ 552 (1064)
.|||||||+++++.|++.|++|+|.+||.+ +++|+-++-||-|-++|..++ +.. ...+.+.+.
T Consensus 357 ~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e-----~~as~q~i~ 425 (546)
T COG4615 357 GNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPE-----GKASPQLIE 425 (546)
T ss_pred CCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCc-----cCCChHHHH
Confidence 999999999999999999999999999964 467888888999988876443 111 114567788
Q ss_pred HHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH----HHHhcCcEE
Q 001511 553 ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA----KVRAMGTSC 628 (1064)
Q Consensus 553 ~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~----~l~~~g~Tv 628 (1064)
..|+++.+.+...-..... ....||-|||+|+|+--|++-+-||+++||=-+--||.-++.+++ .++++|+||
T Consensus 426 ~~LqrLel~~ktsl~d~~f---s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI 502 (546)
T COG4615 426 KWLQRLELAHKTSLNDGRF---SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTI 502 (546)
T ss_pred HHHHHHHHhhhhcccCCcc---cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeE
Confidence 8888877765433211100 013699999999999999999999999999999999999998775 457889999
Q ss_pred EEEccChhHHHhcCEEEEEeCC
Q 001511 629 ITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 629 I~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+.||||-....++||++.++++
T Consensus 503 ~aIsHDd~YF~~ADrll~~~~G 524 (546)
T COG4615 503 FAISHDDHYFIHADRLLEMRNG 524 (546)
T ss_pred EEEecCchhhhhHHHHHHHhcC
Confidence 9999999999999999999875
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=329.78 Aligned_cols=193 Identities=27% Similarity=0.296 Sum_probs=166.9
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc--cccccEEEEecCC
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--DLNKEIFYVPQRP 522 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--~lr~~i~~v~Q~p 522 (1064)
++++||++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+- .-++.++|+||++
T Consensus 1 l~l~~v~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRFG-KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 47899999986 46799999999999999999999999999999999999999999999999641 1135799999999
Q ss_pred CCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001511 523 YTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1064)
Q Consensus 523 ~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1064)
.++. .|++||+.++..... ..++++.++++.+++++..++.+ .+||||||||++||||++.+|+++|
T Consensus 80 ~~~~~~t~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~~rv~laral~~~p~lll 147 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLLG----LPDSRIDEVLNIVDLTNTGKKKA--------KQFSLGMKQRLGIAIALLNHPKLLI 147 (223)
T ss_pred CccccCCHHHHHHHHHHHcC----CCHHHHHHHHHHcCCcHHHhhhH--------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8765 699999976432111 23567888999999998877766 3899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 602 LDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 602 LDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|||||++||+.+.+.+.+.+++ .|.|+|++||+++.+ ..||++++|+++
T Consensus 148 lDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g 200 (223)
T TIGR03740 148 LDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEG 200 (223)
T ss_pred ECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCC
Confidence 9999999999999999887764 478999999999987 479999999864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=325.50 Aligned_cols=188 Identities=23% Similarity=0.325 Sum_probs=162.9
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v 518 (1064)
+++++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...+++++|+
T Consensus 1 ml~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~ 79 (200)
T PRK13540 1 MLDVIELDFDYH-DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFV 79 (200)
T ss_pred CEEEEEEEEEeC-CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEe
Confidence 378999999996 4679999999999999999999999999999999999999999999999965 2346789999
Q ss_pred ecCCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 519 PQRPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 519 ~Q~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
||++.++ ..|++||+.++.... ..+.++.++++.+++.+..++.+ .+||||||||++||||++.+|
T Consensus 80 ~q~~~~~~~~tv~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 80 GHRSGINPYLTLRENCLYDIHFS-----PGAVGITELCRLFSLEHLIDYPC--------GLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred ccccccCcCCCHHHHHHHHHhcC-----cchHHHHHHHHHcCCchhhhCCh--------hhcCHHHHHHHHHHHHHhcCC
Confidence 9999875 579999998763211 12346788999999987666544 379999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEE
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVL 645 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il 645 (1064)
+++||||||++||+.+++.+.+.+++ .|.|+|++||+...+..+|.-+
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 99999999999999999999888764 4899999999999998887654
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=336.65 Aligned_cols=199 Identities=20% Similarity=0.260 Sum_probs=165.4
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC-----ccEEEeCCCC--------c
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVG--------S 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~-----~G~I~i~g~~--------~ 509 (1064)
+.|+++||++.|+ +..+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+ .
T Consensus 6 ~~l~~~nl~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYD-TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeC-CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 4699999999995 457999999999999999999999999999999999999985 8999999854 1
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCChhHH----hcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLEYLL----DRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~~~~----~~~p~~~~~~~g~~LSGGqr 584 (1064)
.+++.++|+||++.++..|+.||+.++...... .....++++.++++.+++.+++ ++.+ .+||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LSgGq~ 156 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSA--------LDLSGGQQ 156 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCc--------ccCCHHHH
Confidence 246779999999988889999999864321111 0111234577889999886433 3332 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++|||||+++|+++||||||++||+.++..+.+.+++ .|.|+|+|||++..+. .||+|++|+++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~ 227 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGN 227 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccC
Confidence 999999999999999999999999999999998887764 4899999999999875 69999999973
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=337.01 Aligned_cols=200 Identities=21% Similarity=0.252 Sum_probs=166.1
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-------- 508 (1064)
.+.|+++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.+
T Consensus 14 ~~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 14 QQKSEVNKLNFYYG-GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CceEEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 56799999999996 45799999999999999999999999999999999999875 79999998853
Q ss_pred --ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcCh
Q 001511 509 --SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSL 581 (1064)
Q Consensus 509 --~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSG 581 (1064)
..+++.++|+||++.++.+|++||+.++........ ...++++.++++.+++.+ ..++.+ .+|||
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~--------~~LS~ 164 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLA--------FNLSG 164 (265)
T ss_pred CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCc--------ccCCH
Confidence 124678999999999888899999987532111111 122456778888888743 333333 48999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||||++|||||+.+|+++||||||++||+.+.+.+.+.+++. +.|+|+|||+++.+. .||++++|+++
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G 236 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMG 236 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999998887653 689999999999885 79999999864
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=331.25 Aligned_cols=199 Identities=25% Similarity=0.371 Sum_probs=165.9
Q ss_pred cEEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC---CCccEEEeCCCC---cccccc
Q 001511 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---LVSGHIAKPGVG---SDLNKE 514 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~---p~~G~I~i~g~~---~~lr~~ 514 (1064)
.+.++||++.|++. +++++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+ ...++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 36799999999764 689999999999999999999999999999999999999 999999999965 245778
Q ss_pred EEEEecCCCCCcc-cHHHHhcCCCCCC--Cc-CCCCCHHHHHH-HHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 515 IFYVPQRPYTAVG-TLRDQLIYPLTSD--QE-VEPLTHGGMVE-LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 515 i~~v~Q~p~l~~~-Ti~eni~~~~~~~--~~-~~~~~~~~i~~-~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
++|+||++.++.. |++||+.++.... .. ......+++.+ .++.+++.+..++.+ .+||||||||++|
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~l 154 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV--------KGISGGERRRVSI 154 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc--------cCcCHHHHHHHHH
Confidence 9999999988775 9999998753211 00 11111223444 788888887766655 4899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccCh--hHHHhcCEEEEEeCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRP--ALVAFHDVVLSLDGE 650 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l--~~i~~~D~Il~l~~~ 650 (1064)
||||+.+|+++||||||++||+.++..+.+.+++ .|.|+|++||++ .....+|++++|+++
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G 220 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSG 220 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999888764 488999999998 345689999999874
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=336.66 Aligned_cols=198 Identities=26% Similarity=0.312 Sum_probs=164.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------cc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG--------SD 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~--------~~ 510 (1064)
.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ ..
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYG-SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeC-CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 689999999995 46799999999999999999999999999999999999987 49999999854 12
Q ss_pred ccccEEEEecCCCCCc-ccHHHHhcCCCCCCCc--CCCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHH
Q 001511 511 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 511 lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~--~~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGq 583 (1064)
++++++|+||++.++. .|+.||+.++...... .....++++.++++.+++... .++.+ .+|||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~G~ 154 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYP--------SNLSGGQ 154 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccCh--------hhCCHHH
Confidence 4578999999998876 4999999875321110 111223467788899988532 33333 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+. .||+|++|+++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 224 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLG 224 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECC
Confidence 9999999999999999999999999999999999888765 3689999999999875 69999999874
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=317.13 Aligned_cols=161 Identities=34% Similarity=0.584 Sum_probs=146.8
Q ss_pred EEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 445 i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
++++|+++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 4789999999753 469999999999999999999999999999999999999999999999964 234678999
Q ss_pred EecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
++|++.++..|++||+ ||||||||++|||||+.+|
T Consensus 81 ~~q~~~~~~~tv~~~l---------------------------------------------LS~G~~qrv~la~al~~~p 115 (173)
T cd03246 81 LPQDDELFSGSIAENI---------------------------------------------LSGGQRQRLGLARALYGNP 115 (173)
T ss_pred ECCCCccccCcHHHHC---------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 9999988878998886 8999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+++||||||++||+.++..+.+.+++ .|+|+|++||+++.+..||++++|+++
T Consensus 116 ~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G 171 (173)
T cd03246 116 RILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDG 171 (173)
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 99999999999999999998887754 488999999999998899999999864
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=326.41 Aligned_cols=195 Identities=23% Similarity=0.302 Sum_probs=166.9
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---ccccccEEEEe
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---SDLNKEIFYVP 519 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---~~lr~~i~~v~ 519 (1064)
..++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|++
T Consensus 10 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~ 88 (214)
T PRK13543 10 PLLAAHALAFSRN-EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLG 88 (214)
T ss_pred ceEEEeeEEEecC-CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEee
Confidence 4799999999985 4579999999999999999999999999999999999999999999999964 12345799999
Q ss_pred cCCCCCcc-cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|++.++.. |+.||+.+...... ...++.+.++++.+++.+..++.+ .+||||||||++||||++.+|+
T Consensus 89 q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~~p~ 157 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCGLHG---RRAKQMPGSALAIVGLAGYEDTLV--------RQLSAGQKKRLALARLWLSPAP 157 (214)
T ss_pred cCcccccCCcHHHHHHHHHHhcC---CcHHHHHHHHHHHcCChhhccCCh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99987764 99999976432111 123456678899999987776665 3899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDG 649 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~ 649 (1064)
++||||||++||+++++.+.+.+++ .|.|+|++||+++.+ ..+|++++++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 158 LWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999887754 489999999999987 47899999874
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=325.70 Aligned_cols=174 Identities=25% Similarity=0.302 Sum_probs=147.4
Q ss_pred CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc--------cccccEEEEecCC--CCC
Q 001511 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNKEIFYVPQRP--YTA 525 (1064)
Q Consensus 456 ~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------~lr~~i~~v~Q~p--~l~ 525 (1064)
+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+- .+++.++|+||+| .++
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 456799999999999999999999999999999999999999999999998541 2356799999998 466
Q ss_pred cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCC
Q 001511 526 VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605 (1064)
Q Consensus 526 ~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEP 605 (1064)
..|++||+.++............+++.++++.++++++.++.|. +||||||||++|||||+.+|+++|||||
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTH--------CLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChh--------hCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 78999999875321111111123567889999999988888773 8999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh---cCcEEEEEccChhH
Q 001511 606 TSAVTTDMEERFCAKVRA---MGTSCITISHRPAL 637 (1064)
Q Consensus 606 TSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~ 637 (1064)
|++||+.+++.+.+.+++ .|+|+|++||+++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999998887764 48999999999864
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=313.01 Aligned_cols=225 Identities=20% Similarity=0.254 Sum_probs=187.2
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC--------------
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------------- 508 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------------- 508 (1064)
..++++|+.++|. ...+|++|||+.++|+.+.|+|.|||||||++|+|.=|..|+.|+|.++|..
T Consensus 5 ~~l~v~dlHK~~G-~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 5 NALEVEDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred cceehhHHHhhcc-cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 4689999999994 5679999999999999999999999999999999999999999999999842
Q ss_pred -----ccccccEEEEecCCCCCc-ccHHHHhcCCC-CCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcCh
Q 001511 509 -----SDLNKEIFYVPQRPYTAV-GTLRDQLIYPL-TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSL 581 (1064)
Q Consensus 509 -----~~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~-~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSG 581 (1064)
..+|.+.++|||+..+.. .|+.||+...- ..-+..+.+..++....|.++|+.+..+.||. .|||
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~--------~LSG 155 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPA--------HLSG 155 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCcc--------ccCc
Confidence 135789999999988764 69999998642 11122223445677889999999999999994 8999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH---HHhcCcEEEEEccChhHHHh-cCEEEEEeCCCceEEee
Q 001511 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAK---VRAMGTSCITISHRPALVAF-HDVVLSLDGEGEWRVHD 657 (1064)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~---l~~~g~TvI~ItH~l~~i~~-~D~Il~l~~~g~~~~~~ 657 (1064)
|||||++|||||+.+|+++++|||||||||+...++++. |.+.|+|.+++||.+..++. ..+++.++++
T Consensus 156 GQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G------- 228 (256)
T COG4598 156 GQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQG------- 228 (256)
T ss_pred hHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecc-------
Confidence 999999999999999999999999999999988876654 45679999999999999975 6777777753
Q ss_pred cCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhc
Q 001511 658 KRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAA 715 (1064)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~ 715 (1064)
.+-|.++.+++|.| |..|+.++.+++
T Consensus 229 -------------------------------~iEE~G~P~qvf~n-P~S~RlkqFlss 254 (256)
T COG4598 229 -------------------------------KIEEEGPPEQVFGN-PQSPRLKQFLSS 254 (256)
T ss_pred -------------------------------eecccCChHHHhcC-CCCHHHHHHHHh
Confidence 22344666778876 688888888765
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=334.89 Aligned_cols=195 Identities=24% Similarity=0.326 Sum_probs=162.8
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC----CccEEEeCCCC---ccc-cccE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL----VSGHIAKPGVG---SDL-NKEI 515 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p----~~G~I~i~g~~---~~l-r~~i 515 (1064)
.++++||++.| ++++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ .+. ++.+
T Consensus 4 ~l~~~~l~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i 81 (254)
T PRK10418 4 QIELRNIALQA--AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI 81 (254)
T ss_pred EEEEeCeEEEe--ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceE
Confidence 58999999999 46799999999999999999999999999999999999999 99999999965 122 3579
Q ss_pred EEEecCCC-CC--cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChh---HHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 516 FYVPQRPY-TA--VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 516 ~~v~Q~p~-l~--~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~---~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
+|+||++. .+ ..|+.+|+.+....... ...++++.++++.+++.+ ..++.+ .+||||||||++|
T Consensus 82 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~LS~Gq~qrv~l 151 (254)
T PRK10418 82 ATIMQNPRSAFNPLHTMHTHARETCLALGK--PADDATLTAALEAVGLENAARVLKLYP--------FEMSGGMLQRMMI 151 (254)
T ss_pred EEEecCCccccCccccHHHHHHHHHHHcCC--ChHHHHHHHHHHHcCCCChhhhhhcCC--------cccCHHHHHHHHH
Confidence 99999984 23 35888887653211111 123467888999999976 345554 4899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||+.+|++|||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .+|++++|+++
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G 217 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHG 217 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999998887754 3799999999999875 69999999864
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=335.89 Aligned_cols=199 Identities=19% Similarity=0.247 Sum_probs=168.4
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC---ccEEEeCCCCc----------
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVGS---------- 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~---~G~I~i~g~~~---------- 509 (1064)
+.|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+-
T Consensus 3 ~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 3 TIIRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred cEEEEeeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 3689999999995 568999999999999999999999999999999999999986 49999999541
Q ss_pred -cccccEEEEecCCCCCc-ccHHHHhcCCCCCCC--------cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCc
Q 001511 510 -DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQ--------EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDEL 579 (1064)
Q Consensus 510 -~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~--------~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~L 579 (1064)
.+++.++|+||++.++. .|+.||+.++..... .......+++.++++.+++.+..++.+. +|
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~L 153 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVS--------TL 153 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcc--------cc
Confidence 12457999999998766 699999987532110 0011234568889999999888887663 89
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|||||||++|||||+.+|++|||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+ ..||+|++++++
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999998887764 389999999999975 679999999865
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=331.84 Aligned_cols=196 Identities=27% Similarity=0.388 Sum_probs=167.7
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEec
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQ 520 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~Q 520 (1064)
|+++|+++.|++ ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+||
T Consensus 1 l~~~~l~~~~~~--~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 1 LKVENLSKDWKE--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred CeeEeEEEEeCC--ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence 468999999863 38999999999999999999999999999999999999999999999964 123568999999
Q ss_pred CCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
++.++. .|+.||+.++...........++++.++++.+++.++.++.+. +||||||||++||||++.+|++
T Consensus 79 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE--------TLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred cCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcc--------cCCHHHHHHHHHHHHHHcCCCE
Confidence 998774 7999999875322111111234567889999999988888774 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++|||||++||+.+++.+.+.+++ .|+|+|++||++..+. .+|++++|+++
T Consensus 151 lllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G 206 (235)
T cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNG 206 (235)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999887764 3899999999999876 69999999864
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=337.00 Aligned_cols=196 Identities=27% Similarity=0.332 Sum_probs=163.7
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC--ccc-cccEEEEec
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--SDL-NKEIFYVPQ 520 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--~~l-r~~i~~v~Q 520 (1064)
.++++||++.|++++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ... ++.++|+||
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 58999999999756789999999999999999999999999999999999999999999999964 222 246999999
Q ss_pred CCCC---CcccHHHHhcCCCCCC-C---cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 521 RPYT---AVGTLRDQLIYPLTSD-Q---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 521 ~p~l---~~~Ti~eni~~~~~~~-~---~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
++.+ +..++.+|+.++.... . ......++++.++++.+++.+..++.+ .+||||||||++|||||
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgG~~qrv~laraL 157 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI--------GELSGGQKKRVFLARAI 157 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc--------ccCCHHHHHHHHHHHHH
Confidence 9864 3457888887542110 0 001122446778899999988877766 38999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEE
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSL 647 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l 647 (1064)
+.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+ ..||+++++
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~ 215 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV 215 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999888754 489999999999876 579999777
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=317.66 Aligned_cols=164 Identities=29% Similarity=0.434 Sum_probs=148.9
Q ss_pred EEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEE
Q 001511 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYV 518 (1064)
Q Consensus 445 i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v 518 (1064)
|+++|+++.|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4789999999654 379999999999999999999999999999999999999999999999964 2346789999
Q ss_pred ecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 519 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 519 ~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
||+|.++..|++||+ + .+||||||||++||||++++|+
T Consensus 81 ~q~~~~~~~tv~~~i----------------------------------~--------~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 81 NQRPYLFDTTLRNNL----------------------------------G--------RRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred ccCCeeecccHHHhh----------------------------------c--------ccCCHHHHHHHHHHHHHhcCCC
Confidence 999988888998887 2 3799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
++||||||++||+.+++.+.+.+++ .+.|+|++||+++.+..+|++++|+++
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g 172 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENG 172 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 9999999999999999999888765 389999999999999899999999864
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=333.38 Aligned_cols=200 Identities=21% Similarity=0.188 Sum_probs=166.5
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCCc--------
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVGS-------- 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~~-------- 509 (1064)
..+.+++++++|. +.++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+-
T Consensus 7 ~~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 7 IVMDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred ceEEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4689999999884 56899999999999999999999999999999999999986 799999999641
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
.+++.++|+||++.++..|+.||+.++...... .....+++.++++.+++.+.+..... ....+|||||+||++|
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~----~~~~~LS~G~~qrv~l 160 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKLK----VSGLSLSGGQQQRLCI 160 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhhh----CCcccCCHHHHHHHHH
Confidence 245679999999998889999999876432111 11234578889999998654322110 1234899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEe
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLD 648 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~ 648 (1064)
||||+++|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+ ..||+|++|+
T Consensus 161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~ 222 (261)
T PRK14263 161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFS 222 (261)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999988875 378999999999976 4699999997
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=335.53 Aligned_cols=200 Identities=29% Similarity=0.353 Sum_probs=165.6
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCC------CC------c
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG------VG------S 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g------~~------~ 509 (1064)
.+.++++|++++|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+ .
T Consensus 8 ~~~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 8 EDVFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hhheeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 46799999999995 56899999999999999999999999999999999999999997777665 32 1
Q ss_pred cccccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHH
Q 001511 510 DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGq 583 (1064)
.+++.++|+||+|.++. .|+.||+.++........ ....+++.++++.+++.+ ..++.+ ..|||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~LS~G~ 158 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPA--------SQLSGGQ 158 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCc--------ccCCHHH
Confidence 34678999999998876 499999987632211111 112345778899999863 334433 4799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.++..+.+.+.+ .+.|+|++||+++.+ ..||++++|+++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g 228 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNG 228 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999888765 368999999999988 579999999864
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=336.74 Aligned_cols=198 Identities=24% Similarity=0.322 Sum_probs=167.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC--------ccEEEeCCCC------c
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV--------SGHIAKPGVG------S 509 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~--------~G~I~i~g~~------~ 509 (1064)
+|+++|+++.|. ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+ .
T Consensus 1 ml~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 1 MLTADHLHVARR-HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred CeEEEEEEEEEC-CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 378999999985 468999999999999999999999999999999999999998 9999999964 1
Q ss_pred cccccEEEEecCCC-CCcccHHHHhcCCCCCC----CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPY-TAVGTLRDQLIYPLTSD----QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~-l~~~Ti~eni~~~~~~~----~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
.+++.++|+||++. .+..|++||+.++.... ........+.+.++++.+++.+..++.+ .+||||||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~ 151 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV--------TTLSGGEL 151 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc--------ccCCHHHH
Confidence 34567999999986 46789999998753211 0011123356788999999988777765 48999999
Q ss_pred HHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFY---------HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~---------~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++|||||+ .+|+++||||||++||+.+++.+.+.+++ .|.|+|+|||+++.+. .||++++|+++
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G 231 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADG 231 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999 59999999999999999999999887754 2899999999999885 79999999864
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=324.19 Aligned_cols=192 Identities=29% Similarity=0.371 Sum_probs=165.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc---cccccEEEEec
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---DLNKEIFYVPQ 520 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~---~lr~~i~~v~Q 520 (1064)
+++++||++.|+ ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. ..++.++|++|
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 2 MLEGEDLACVRG-GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEEeEEEEEC-CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence 479999999996 45799999999999999999999999999999999999999999999999641 25678999998
Q ss_pred CCCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 521 RPYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 521 ~p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
++.++ ..|++||+.+...... ..++++.++++.+|+.++.++.+ .+||||||||++||||++.+|++
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 81 RNAMKPALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPLAHLPF--------GYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred CCcCCCCCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHcCCh--------hhcCHHHHHHHHHHHHHhcCCCE
Confidence 87664 5799999976432211 23456889999999988766655 38999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
+||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+.. |+++.++.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999888764 48999999999999887 99988853
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=327.41 Aligned_cols=197 Identities=24% Similarity=0.302 Sum_probs=161.6
Q ss_pred cEEEEeeEEEcCC------CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeC--CC--C-c---
Q 001511 444 YIEFSGVKVVTPT------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP--GV--G-S--- 509 (1064)
Q Consensus 444 ~i~~~nvs~~y~~------~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~--g~--~-~--- 509 (1064)
+|+++||++.|++ +.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. + .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 3789999999953 1479999999999999999999999999999999999999999999998 42 2 0
Q ss_pred -----cc-cccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhH-HhcCCCCcccCCCCCcCh
Q 001511 510 -----DL-NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSL 581 (1064)
Q Consensus 510 -----~l-r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~-~~~~p~~~~~~~g~~LSG 581 (1064)
+. ++.++|+||++.++. .|+.||+.++............+++.++++.+++.+. .++.+ .+|||
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LS~ 152 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPP--------ATFSG 152 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCc--------ccCCH
Confidence 11 357999999997664 5999999864321111111224567788999999764 34444 48999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEe
Q 001511 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLD 648 (1064)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~ 648 (1064)
|||||++|||||+.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .||+++.+.
T Consensus 153 G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 153 GEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 999999999999999999999999999999999999887764 4899999999999885 799998764
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=347.86 Aligned_cols=188 Identities=23% Similarity=0.321 Sum_probs=164.1
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c---------ccccc
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S---------DLNKE 514 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~---------~lr~~ 514 (1064)
|++ ||++.|.+ +. + |+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . ..++.
T Consensus 2 l~~-~l~k~~~~-~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 2 LEL-NFKQQLGD-LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred eEE-EEEEEeCC-EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 677 99999953 32 3 9999999999999999999999999999999999999999999854 1 23578
Q ss_pred EEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 515 IFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 515 i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
++|+||++.++. .|++||+.++... ...+++.++++.+++.++.++.|. +||||||||++|||||
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~~--------~LSgGq~qRvalaraL 143 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAK------SMVAQFDKIVALLGIEPLLDRYPG--------SLSGGEKQRVAIGRAL 143 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhh------hhHHHHHHHHHHcCCchhhhCCcc--------cCCHHHHHHHHHHHHH
Confidence 999999998875 6999999986431 235678899999999988888884 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+|+++||||||++||+.+++.+.+.+++ .|+|+|+|||+++.+. .||++++|+++
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G 205 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQG 205 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999998877654 3899999999998764 69999999864
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=325.42 Aligned_cols=190 Identities=25% Similarity=0.350 Sum_probs=161.2
Q ss_pred EEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc----------cccccE
Q 001511 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKEI 515 (1064)
Q Consensus 446 ~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~----------~lr~~i 515 (1064)
.+ ||++.|++ +.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.+- ..++.+
T Consensus 3 ~~-~l~~~~~~-~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 3 CV-DIEKRLPD-FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred ee-eeeEecCC-eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 45 89999964 444 99999999 99999999999999999999999999999999998541 235689
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+|+||++.++. .|+.||+.++.... .....++++.++++.+++.+..++.+ .+||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYP--------AQLSGGEKQRVALARALA 147 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCc--------ccCCHHHHHHHHHHHHHh
Confidence 99999998875 69999998753221 11123456788999999988777766 389999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 208 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDG 208 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECC
Confidence 99999999999999999999998887754 3899999999999874 79999999864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=330.31 Aligned_cols=185 Identities=31% Similarity=0.431 Sum_probs=162.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCC
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~ 523 (1064)
.++++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..++|+||++.
T Consensus 4 ~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----~~~i~~v~q~~~ 77 (251)
T PRK09544 4 LVSLENVSVSFG-QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----KLRIGYVPQKLY 77 (251)
T ss_pred EEEEeceEEEEC-CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----ccCEEEeccccc
Confidence 689999999996 46799999999999999999999999999999999999999999999987 347999999987
Q ss_pred CCc---ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001511 524 TAV---GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1064)
Q Consensus 524 l~~---~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1064)
++. .|+.+++.+.. ...++++.++++.+++.++.++.+ .+||||||||++|||||+.+|+++
T Consensus 78 ~~~~l~~~~~~~~~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgGq~qrv~laral~~~p~ll 142 (251)
T PRK09544 78 LDTTLPLTVNRFLRLRP-------GTKKEDILPALKRVQAGHLIDAPM--------QKLSGGETQRVLLARALLNRPQLL 142 (251)
T ss_pred cccccChhHHHHHhccc-------cccHHHHHHHHHHcCChHHHhCCh--------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 653 48888875421 123567888999999998888766 389999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeC
Q 001511 601 ILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDG 649 (1064)
Q Consensus 601 iLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~ 649 (1064)
||||||++||+.++..+.+.+++ .|.|+|++||+++.+ ..+|+|++|++
T Consensus 143 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~ 196 (251)
T PRK09544 143 VLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH 196 (251)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC
Confidence 99999999999999998887753 289999999999987 56999999964
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=333.01 Aligned_cols=198 Identities=23% Similarity=0.252 Sum_probs=161.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC-----ccEEEeCCCCc--------c
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV-----SGHIAKPGVGS--------D 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~-----~G~I~i~g~~~--------~ 510 (1064)
.++++||++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+. .
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 589999999996 468999999999999999999999999999999999999874 89999999541 3
Q ss_pred ccccEEEEecCCCCCc-ccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChh----HHhcCCCCcccCCCCCcChHHH
Q 001511 511 LNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEY----LLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 511 lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~----~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
+++.++|+||++.++. .|+.||+.++....... .....+.+.+.++.+++.+ ..++. ..+||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--------~~~LS~G~~ 154 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTP--------ATGLSGGQQ 154 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCC--------cccCCHHHH
Confidence 4568999999998876 59999998643211110 1111234555666676643 22322 358999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .||++++|+++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVG 223 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999888765 3699999999999886 69999999875
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=330.34 Aligned_cols=198 Identities=24% Similarity=0.259 Sum_probs=165.4
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------cc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG--------SD 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~--------~~ 510 (1064)
+|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ ..
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYG-EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeC-CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 689999999995 46899999999999999999999999999999999999974 89999999954 12
Q ss_pred ccccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHHHH
Q 001511 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 511 lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
+++.++|+||++.++..|++||+.++....... ....++++.++++.+++.+. .++.+ .+|||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~Gq~q 153 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPG--------TRLSGGQQQ 153 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCCh--------hhcCHHHHH
Confidence 467899999999988899999998753211111 11234457778888888542 33333 489999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|++|||||+.+|+++||||||++||+.++..+.+.+++ .++|+|++||+++.+ ..+|++++++++
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G 221 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRG 221 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999888765 378999999999975 569999999864
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=320.65 Aligned_cols=187 Identities=26% Similarity=0.352 Sum_probs=158.5
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEEe
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v~ 519 (1064)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|++
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSRG-ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 47899999985 4679999999999999999999999999999999999999999999999964 22457899999
Q ss_pred cCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|++.++. .|+.||+.+...... ..++++.++++.+++.++.++.+ .+||||||||++||||++.+|+
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPA--------AQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCCh--------hhcCHHHHHHHHHHHHHhcCCC
Confidence 9988765 699999986532211 12446788999999998877766 3899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEE
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVL 645 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il 645 (1064)
++||||||++||+.+++.+.+.+++ .|.|+|++||+...+.. ++.+
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~-~~~~ 196 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE-AREL 196 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc-eEEe
Confidence 9999999999999999999888764 48999999999865433 4444
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=330.47 Aligned_cols=199 Identities=22% Similarity=0.254 Sum_probs=164.0
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC--C---CccEEEeCCCCc--------
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--L---VSGHIAKPGVGS-------- 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~--p---~~G~I~i~g~~~-------- 509 (1064)
.+|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+-
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 4 KIITSSDVHLFYG-KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred ceEEEEeEEEEEC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4689999999996 4679999999999999999999999999999999999975 4 599999999631
Q ss_pred cccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC-CCCHHHHHHHHHhcCCh----hHHhcCCCCcccCCCCCcChHHH
Q 001511 510 DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGMVELLKNVDLE----YLLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 510 ~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-~~~~~~i~~~l~~~~L~----~~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
.+++.++|+||++.++..|+.+|+.++........ ...++++.++++.+++. +..++.+ .+||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~--------~~LS~Gq~ 154 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESA--------LSLSGGQQ 154 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCc--------ccCCHHHH
Confidence 24578999999998887899999987532111111 11234566778888764 2333333 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++|||||+.+|+++||||||++||+.+++.+.+.+++. +.|+|+|||+++.+. .+|+|++|+++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTG 223 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999998887653 689999999999875 69999999865
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=333.93 Aligned_cols=200 Identities=21% Similarity=0.266 Sum_probs=166.7
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-------- 508 (1064)
.+.++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 23 ~~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 23 QTALEVRNLNLFYG-DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CcEEEEEEEEEEEC-CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 45799999999995 46799999999999999999999999999999999999884 89999999864
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhH----HhcCCCCcccCCCCCcChHH
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYL----LDRYPPEKEINWGDELSLGE 583 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~----~~~~p~~~~~~~g~~LSGGq 583 (1064)
..+++.++|+||++.++..|+.||+.++....... ....++++.++++.+++.+. .++.+ .+|||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~LS~Gq 173 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENA--------FGLSGGQ 173 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCc--------ccCCHHH
Confidence 13467899999999888789999998753221110 11123557788888888643 33333 4899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 584 QQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 584 rQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++|||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .||++++|+++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G 243 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMG 243 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECC
Confidence 9999999999999999999999999999999999888765 3789999999999874 69999999864
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=346.08 Aligned_cols=189 Identities=22% Similarity=0.288 Sum_probs=162.4
Q ss_pred eeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc----------cccccEEEE
Q 001511 449 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS----------DLNKEIFYV 518 (1064)
Q Consensus 449 nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~----------~lr~~i~~v 518 (1064)
||++.|++ .. + |+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- ..++.++|+
T Consensus 4 ~l~~~~~~-~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGD-FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECC-EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 78898853 34 4 99999999999999999999999999999999999999999999541 235689999
Q ss_pred ecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 519 PQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 519 ~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
||++.++. .|++||+.++..... ....++++.++++.+++.++.++.|. +||||||||++|||||+.+|
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~--~~~~~~~~~~~l~~~gL~~~~~~~~~--------~LSgGqkqRvalAraL~~~p 150 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRAR--PSERRISFERVIELLGIGHLLGRLPG--------RLSGGEKQRVAIGRALLSSP 150 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccC--hhHHHHHHHHHHHHcCChhHhcCChh--------hCCHHHHHHHHHHHHHHcCC
Confidence 99998876 599999998643211 11224568889999999988888774 89999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+++||||||++||+.+++.+.+.+++ .|+|+|+|||+++.+. .+|++++|+++
T Consensus 151 ~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G 208 (354)
T TIGR02142 151 RLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDG 208 (354)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999998887754 3899999999999875 69999999875
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=311.11 Aligned_cols=161 Identities=30% Similarity=0.465 Sum_probs=145.0
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEEe
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v~ 519 (1064)
++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++++.++|+|
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 468999999864 579999999999999999999999999999999999999999999999964 23467899999
Q ss_pred cCCCCCcc-cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
|++.++.. |+.||+. ||||||||++|||||+.+|+
T Consensus 80 q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 80 EEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred cCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99987764 8888863 89999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++||||||++||+.+.+.+.+.+++ .|.|+|++||+++.+. .+|++++|+++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g 171 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNG 171 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999888764 3789999999999876 79999999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=329.05 Aligned_cols=202 Identities=23% Similarity=0.258 Sum_probs=164.7
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCC-c-------c
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-S-------D 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-~-------~ 510 (1064)
.++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+ . .
T Consensus 3 ~l~~~~v~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFD-DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 478999999985 4679999999999999999999999999999999999864 489999999964 1 2
Q ss_pred ccccEEEEecCCCCCcccHHHHhcCCCCCCCcC-CCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 511 LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 511 lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~-~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
+++.++|+||++.++..|+.||+.++....... .....+++.++++.+++.+.+....+ ....+||||||||++|
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~----~~~~~LS~Gq~qrv~l 157 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLD----KSALGLSGGQQQRLCI 157 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHh----CCcccCCHHHHHHHHH
Confidence 467899999999988889999998753221111 11133567788999998643322110 1135899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||+.+|+++||||||++||+.++..+.+.+++ .+.|+|++||+++.+. .+|++++++++
T Consensus 158 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G 221 (250)
T PRK14266 158 ARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNG 221 (250)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECC
Confidence 9999999999999999999999999999888765 3789999999999775 58999999764
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=329.10 Aligned_cols=186 Identities=25% Similarity=0.304 Sum_probs=154.7
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEEe-cCCCCC-cccH
Q 001511 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP-QRPYTA-VGTL 529 (1064)
Q Consensus 457 ~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v~-Q~p~l~-~~Ti 529 (1064)
++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++|+| |++.++ ..|+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 4579999999999999999999999999999999999999999999999864 23467899998 556554 5799
Q ss_pred HHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 001511 530 RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609 (1064)
Q Consensus 530 ~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaL 609 (1064)
+||+.+.............+++.++++.+++.+..++.+ .+||||||||++|||||+.+|+++||||||++|
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 184 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPV--------RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGL 184 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 999976432111111112345677889999987777655 379999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 610 TTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 610 D~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|+.+.+.+.+.+++ .+.|+|++||+++.+. .+|++++|+++
T Consensus 185 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 230 (236)
T cd03267 185 DVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKG 230 (236)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 99999999887764 2789999999999874 69999999864
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=303.19 Aligned_cols=186 Identities=27% Similarity=0.404 Sum_probs=162.0
Q ss_pred CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccH
Q 001511 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTL 529 (1064)
Q Consensus 456 ~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti 529 (1064)
++.++|+++||++.+||.++|+||||||||||+|+++-|.+|++|++.+.|.+ +.+|.+|+||.|.|.+|.+||
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 45789999999999999999999999999999999999999999999999976 467999999999999999999
Q ss_pred HHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 001511 530 RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609 (1064)
Q Consensus 530 ~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaL 609 (1064)
.||+.||-..+.. ..+.....+.++++++.+.+-..+ ..+||||||||+||+|-|.--|+||+||||||||
T Consensus 94 eDNlifP~~~r~r--r~dr~aa~~llar~~l~~~~L~k~-------it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 94 EDNLIFPWQIRNR--RPDRAAALDLLARFALPDSILTKN-------ITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hhccccchHHhcc--CCChHHHHHHHHHcCCchhhhcch-------hhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 9999998654322 235667888999999976433222 2479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHH----HhcCcEEEEEccChhH-HHhcCEEEEEeCC
Q 001511 610 TTDMEERFCAKV----RAMGTSCITISHRPAL-VAFHDVVLSLDGE 650 (1064)
Q Consensus 610 D~~~~~~l~~~l----~~~g~TvI~ItH~l~~-i~~~D~Il~l~~~ 650 (1064)
|+.+.+.+.+++ ++++..+++||||... ++++|+++-+..+
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G 210 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPG 210 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccC
Confidence 999888766654 5678999999999987 7899999998764
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=328.08 Aligned_cols=192 Identities=25% Similarity=0.395 Sum_probs=164.6
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
.+.|+++|+++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|+
T Consensus 37 ~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------~i~yv~q~ 106 (282)
T cd03291 37 DNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------RISFSSQF 106 (282)
T ss_pred CCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------EEEEEeCc
Confidence 467999999985 35799999999999999999999999999999999999999999999988 59999999
Q ss_pred CCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcc--c-CCCCCcChHHHHHHHHHHHHccCCC
Q 001511 522 PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE--I-NWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 522 p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~--~-~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
++++..|++||+.++... ...++.++++.+++.+.++..|.... . ..+.+||||||||++|||||+.+|+
T Consensus 107 ~~l~~~tv~enl~~~~~~-------~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 107 SWIMPGTIKENIIFGVSY-------DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred ccccccCHHHHhhccccc-------CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999889999999875321 12345567778888887777664322 1 2356899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH-Hh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKV-RA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l-~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
++||||||++||+.++..+.+.+ ++ .+.|+|++||+++.+..||++++|+++
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G 234 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECC
Confidence 99999999999999999887643 32 489999999999999899999999875
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=364.47 Aligned_cols=199 Identities=27% Similarity=0.352 Sum_probs=166.0
Q ss_pred CcEEEEeeEEEcCC----------CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c--
Q 001511 443 NYIEFSGVKVVTPT----------GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-- 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~----------~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-- 509 (1064)
..++++||++.|+. ++++|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.+ .
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc
Confidence 47999999999952 3579999999999999999999999999999999999995 89999999954 1
Q ss_pred ------cccccEEEEecCCC--CC-cccHHHHhcCCCCCCC--cCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCC
Q 001511 510 ------DLNKEIFYVPQRPY--TA-VGTLRDQLIYPLTSDQ--EVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGD 577 (1064)
Q Consensus 510 ------~lr~~i~~v~Q~p~--l~-~~Ti~eni~~~~~~~~--~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~ 577 (1064)
.++++++||||++. ++ ..|+.||+.++..... ......++++.++++.+++. +..++.|.
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 424 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPA-------- 424 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCc--------
Confidence 12567999999983 44 4699999987532110 11112245678899999996 56777664
Q ss_pred CcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 578 ~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.+++ .|.|+|+||||++.+. .||+|++|+++
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 8999999999999999999999999999999999999999888763 3899999999999875 69999999864
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=309.62 Aligned_cols=161 Identities=38% Similarity=0.645 Sum_probs=145.8
Q ss_pred EEEEeeEEEcCCC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 445 IEFSGVKVVTPTG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 445 i~~~nvs~~y~~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
++++|+++.|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4689999999653 379999999999999999999999999999999999999999999999964 134568999
Q ss_pred EecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
+||++.++..|+.||+ ||||||||++||||++.+|
T Consensus 81 ~~~~~~~~~~t~~e~l---------------------------------------------LS~G~~~rl~la~al~~~p 115 (171)
T cd03228 81 VPQDPFLFSGTIRENI---------------------------------------------LSGGQRQRIAIARALLRDP 115 (171)
T ss_pred EcCCchhccchHHHHh---------------------------------------------hCHHHHHHHHHHHHHhcCC
Confidence 9999988878888876 8999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+++||||||++||+.+...+.+.+++. ++|+|++||+++.+..||++++|+++
T Consensus 116 ~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g 170 (171)
T cd03228 116 PILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170 (171)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCC
Confidence 999999999999999999998887653 78999999999998889999999864
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=325.66 Aligned_cols=182 Identities=21% Similarity=0.289 Sum_probs=152.8
Q ss_pred eeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccccccEEEEecCCCCCc-ccHHHHhcCCCC
Q 001511 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRPYTAV-GTLRDQLIYPLT 538 (1064)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~ 538 (1064)
++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .......+|+||++.++. .|+.||+.++..
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999964 122234589999998776 699999987521
Q ss_pred C--CCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 001511 539 S--DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616 (1064)
Q Consensus 539 ~--~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~ 616 (1064)
. .........+++.++++.+++.+..++.+ .+||||||||++|||||+.+|+++||||||++||+.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 152 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRP--------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGN 152 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh--------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHH
Confidence 1 11111122345788999999998877766 3899999999999999999999999999999999999999
Q ss_pred HHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 617 FCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 617 l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+.+++ .|+|+|+|||+++.+. .||++++|+++
T Consensus 153 l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G 191 (230)
T TIGR01184 153 LQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191 (230)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 9887754 3899999999999865 69999999864
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=310.63 Aligned_cols=163 Identities=29% Similarity=0.373 Sum_probs=145.9
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC--------ccccccEE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--------SDLNKEIF 516 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--------~~lr~~i~ 516 (1064)
|+++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ...++.++
T Consensus 1 i~~~~l~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYG-QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEEC-CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 47899999995 4679999999999999999999999999999999999999999999999954 12457899
Q ss_pred EEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
|+||+|.++. .|++||+.+. ||||||||++|||||+.
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~ 117 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQRVALARALAM 117 (178)
T ss_pred EEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHC
Confidence 9999998764 5999987642 89999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|+++||||||++||+.++..+.+.+++ . |+|+|++||+++.+. .+|++++|+++
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g 177 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 9999999999999999999999887754 3 799999999999887 69999999864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=333.74 Aligned_cols=200 Identities=21% Similarity=0.281 Sum_probs=164.8
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-----CCccEEEeCCCC--------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVG-------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-----p~~G~I~i~g~~-------- 508 (1064)
.+.|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 43 ~~~l~i~nl~~~~~~-~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 43 DAKLSVEDLDVYYGD-DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred CceEEEEEEEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 347999999999964 679999999999999999999999999999999999986 689999999854
Q ss_pred ccccccEEEEecCCCCCcccHHHHhcCCCCCCC------------cC-CCCCHHHHHHHHHhcCChh----HHhcCCCCc
Q 001511 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQ------------EV-EPLTHGGMVELLKNVDLEY----LLDRYPPEK 571 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~------------~~-~~~~~~~i~~~l~~~~L~~----~~~~~p~~~ 571 (1064)
..+++.++|+||++.++..|++||+.++..... .. ....++++.++++.+++.+ ..++.+
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--- 198 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNA--- 198 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcc---
Confidence 124578999999998888899999987532110 00 0112456778889998853 333333
Q ss_pred ccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEE-EE
Q 001511 572 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVL-SL 647 (1064)
Q Consensus 572 ~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il-~l 647 (1064)
.+||||||||++|||||+++|++|||||||++||+.++..+.+.+++. +.|+|++||+++.+. .||+++ +|
T Consensus 199 -----~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 199 -----LGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 489999999999999999999999999999999999999999888753 689999999999875 699975 56
Q ss_pred eCC
Q 001511 648 DGE 650 (1064)
Q Consensus 648 ~~~ 650 (1064)
+++
T Consensus 274 ~~G 276 (305)
T PRK14264 274 TGG 276 (305)
T ss_pred cCC
Confidence 653
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=359.80 Aligned_cols=199 Identities=25% Similarity=0.347 Sum_probs=168.5
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc------c-ccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------D-LNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~------~-lr~~i 515 (1064)
++|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- . .++.+
T Consensus 3 ~~i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 3 ALLQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred ceEEEeeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 3689999999995 46799999999999999999999999999999999999999999999999541 1 24679
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCC---cC-CCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQ---EV-EPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~---~~-~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
+|+||++.++. .|++||+.++..... .. .....+++.++++.+++.+..++.+ .+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la 153 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV--------GELSIGEQQMVEIA 153 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch--------hhCCHHHHHHHHHH
Confidence 99999987664 599999988643210 00 1112356788999999988777766 38999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||+.+|++|||||||++||+.++..+.+.+++ .|.|+|+||||++.+. .||+|++|+++
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G 217 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDG 217 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999998877654 4899999999999875 69999999864
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=359.24 Aligned_cols=199 Identities=24% Similarity=0.311 Sum_probs=168.8
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC--CccEEEeCCCCc-------cccc
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL--VSGHIAKPGVGS-------DLNK 513 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p--~~G~I~i~g~~~-------~lr~ 513 (1064)
++|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.+- ..++
T Consensus 4 ~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 4 YLLEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred ceEEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4699999999995 56899999999999999999999999999999999999996 899999999641 1246
Q ss_pred cEEEEecCCCCCc-ccHHHHhcCCCCCC--Cc-CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 514 EIFYVPQRPYTAV-GTLRDQLIYPLTSD--QE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 514 ~i~~v~Q~p~l~~-~Ti~eni~~~~~~~--~~-~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
.++||||++.++. .|++||+.++.... .. ......+++.++++.+++.+..++.+ .+||||||||++|
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGqkqrv~l 154 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV--------GNLGLGQQQLVEI 154 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch--------hhCCHHHHHHHHH
Confidence 7999999997765 59999998864321 10 11112356788999999987777766 3899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||+.+|+++||||||++||+.++..+.+.+++ .|.|+|+|||+++.+. .||++++|+++
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G 219 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDG 219 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECC
Confidence 9999999999999999999999999998887754 4899999999999875 69999999864
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=310.57 Aligned_cols=199 Identities=22% Similarity=0.272 Sum_probs=170.9
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i 515 (1064)
+.+..+|+.++|. ++++++||||+|++||+||+.||||+||||.+.++.|+.+|++|+|.+||.| ..-|..|
T Consensus 3 ~~L~a~~l~K~y~-kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred cEEEehhhhHhhC-CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 3578999999994 6789999999999999999999999999999999999999999999999987 2335689
Q ss_pred EEEecCCCCCcc-cHHHHhcCCCCCCCcCCC--CCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 516 FYVPQRPYTAVG-TLRDQLIYPLTSDQEVEP--LTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 516 ~~v~Q~p~l~~~-Ti~eni~~~~~~~~~~~~--~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
||+||+|.+|.+ ||.|||............ +..+++.++|+.+++.+..++.. .+||||||+|+.||||
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a--------~sLSGGERRR~EIARa 153 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKA--------YSLSGGERRRVEIARA 153 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcc--------cccccchHHHHHHHHH
Confidence 999999999975 999999865544322211 33456778999999999877753 5899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHH---HHhcCcEEEEEccChh-HHHhcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCAK---VRAMGTSCITISHRPA-LVAFHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~~---l~~~g~TvI~ItH~l~-~i~~~D~Il~l~~~ 650 (1064)
|+.+|++++||||++|+||.+...++++ |++.|..|++.-|+.. ++..|||.+++..+
T Consensus 154 La~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G 215 (243)
T COG1137 154 LAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDG 215 (243)
T ss_pred HhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecC
Confidence 9999999999999999999988777665 5567999999999875 67899999999864
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=358.00 Aligned_cols=199 Identities=21% Similarity=0.305 Sum_probs=168.9
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc-------cccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-------DLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~-------~lr~~i 515 (1064)
+.++++||++.|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+- .+++.+
T Consensus 3 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4699999999995 46799999999999999999999999999999999999999999999998541 235789
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCC--Cc-CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSD--QE-VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~--~~-~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1064)
+||||++.++. .|+.||+.++.... .. ......+++.++++.+++.+..++.+ .+||||||||++|||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~qrv~lar 153 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL--------KYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch--------hhCCHHHHHHHHHHH
Confidence 99999997765 59999999864211 10 11122456788999999976666655 389999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 592 AL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||+.+|+++||||||++||+.+.+.+.+.+++ .|.|+|+|||+++.+. .||+|++|+++
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G 216 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDG 216 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999887764 4899999999999875 69999999864
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=313.06 Aligned_cols=185 Identities=20% Similarity=0.259 Sum_probs=157.8
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccc-cccEEEEecCC
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDL-NKEIFYVPQRP 522 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~l-r~~i~~v~Q~p 522 (1064)
++++|+++.|+ ++.+++ +||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ... ++.++|++|++
T Consensus 2 l~~~~l~~~~~-~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 2 LSLHQLQFNIE-QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred eEEEEeeEEEC-CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCc
Confidence 78999999995 345554 999999999999999999999999999999999999999999965 111 34699999987
Q ss_pred CC-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001511 523 YT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1064)
Q Consensus 523 ~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1064)
.+ +..|++||+.+..... ..++++.++++.+++.+..++.+ .+||||||||++||||++++|+++|
T Consensus 80 ~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~~rl~la~al~~~p~~ll 146 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEIY-----NSAETLYAAIHYFKLHDLLDEKC--------YSLSSGMQKIVAIARLIACQSDLWL 146 (195)
T ss_pred CCCccCCHHHHHHHHHHhc-----ccHHHHHHHHHHcCCHhhhccCh--------hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 54 5689999998753221 13456778899999988777655 4899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHHhcCEE
Q 001511 602 LDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVAFHDVV 644 (1064)
Q Consensus 602 LDEPTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~~~D~I 644 (1064)
|||||++||+.+++.+.+.++ +.|.|+|++||+++.++.+|-+
T Consensus 147 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 147 LDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 999999999999999988775 3589999999999999888765
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=358.95 Aligned_cols=200 Identities=26% Similarity=0.372 Sum_probs=165.3
Q ss_pred CcEEEEeeEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-----CccEEEeCCCC-c----
Q 001511 443 NYIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-----VSGHIAKPGVG-S---- 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~---~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-----~~G~I~i~g~~-~---- 509 (1064)
++++++||++.|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.+ .
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 46999999999964 25799999999999999999999999999999999999986 79999999964 1
Q ss_pred ----ccc-ccEEEEecCCC--C-CcccHHHHhcCCCCC-CCcCCCCCHHHHHHHHHhcCChh---HHhcCCCCcccCCCC
Q 001511 510 ----DLN-KEIFYVPQRPY--T-AVGTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEY---LLDRYPPEKEINWGD 577 (1064)
Q Consensus 510 ----~lr-~~i~~v~Q~p~--l-~~~Ti~eni~~~~~~-~~~~~~~~~~~i~~~l~~~~L~~---~~~~~p~~~~~~~g~ 577 (1064)
..| ++++|+||+|. + +..|+.+|+.++... .........+++.++++.+|+.+ ..++.| .
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~--------~ 155 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYP--------H 155 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCC--------c
Confidence 122 57999999985 3 345899998753211 11111123467888999999975 356666 3
Q ss_pred CcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 578 ~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|||||||||+|||||+.+|++|||||||++||+.+...+.+.+++ .|.|+|+||||++.+. .||+|++|+++
T Consensus 156 ~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G 233 (529)
T PRK15134 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233 (529)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECC
Confidence 8999999999999999999999999999999999999999887764 3899999999999875 69999999964
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=356.89 Aligned_cols=199 Identities=24% Similarity=0.246 Sum_probs=168.4
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c------cccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~lr~~i 515 (1064)
+.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . ..++.+
T Consensus 4 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 4 PYISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred ceEEEeeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4699999999995 4679999999999999999999999999999999999999999999999854 1 123579
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCC----Cc---CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSD----QE---VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~----~~---~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1064)
+||||++.++. .|++||+.++.... .. ......+++.++++.+|+.+..++.+ .+||||||||+
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--------~~LSgG~~qrv 154 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV--------ANLSISHKQML 154 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch--------hhCCHHHHHHH
Confidence 99999987765 59999998754211 10 00112356788999999987777766 38999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 588 aIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|||||+.+|++|||||||++||+.++..+.+.+++ .|+|+|+|||+++.+. .||++++|+++
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G 221 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDG 221 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999887754 4899999999999875 69999999864
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=355.73 Aligned_cols=195 Identities=22% Similarity=0.372 Sum_probs=169.2
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-----c-ccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----D-LNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~-lr~~i 515 (1064)
+.|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ . . .+..+
T Consensus 10 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 10 PLLCARSISKQYS-GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred ceEEEEeEEEEeC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 4799999999995 4679999999999999999999999999999999999999999999999854 1 1 13469
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+|+||++.++. .|+.||+.++.... ...++++.++++.+++.+..++.+ .+||||||||++|||||+
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKR----QASMQKMKQLLAALGCQLDLDSSA--------GSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccc----hHHHHHHHHHHHHcCCCccccCCh--------hhCCHHHHHHHHHHHHHH
Confidence 99999997765 59999999864321 123467888999999987777766 389999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
.+|++|||||||++||+.+...+.+.+++ .|+|+|++||+++.+. .||+|++|+++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G 216 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDG 216 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999887754 4899999999999875 69999999864
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=310.06 Aligned_cols=163 Identities=26% Similarity=0.377 Sum_probs=144.4
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c------cccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~lr~~i 515 (1064)
+.++++|+++.| +++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.+
T Consensus 3 ~~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 3 PVLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred cEEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 368999999987 8999999999999999999999999999999999999999999999964 1 235689
Q ss_pred EEEecCC----CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001511 516 FYVPQRP----YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1064)
Q Consensus 516 ~~v~Q~p----~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1064)
+|+||++ ..+..|++||+.++.. ||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~ 117 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGNQQKVVLAR 117 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHH
Confidence 9999995 2445799999875310 8999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 592 AL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|++.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 118 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G 180 (182)
T cd03215 118 WLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEG 180 (182)
T ss_pred HHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCC
Confidence 99999999999999999999999999887764 3899999999998775 59999999864
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=322.02 Aligned_cols=200 Identities=26% Similarity=0.338 Sum_probs=163.3
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhccc--CCCCccEEEeCCCC-c-----cccc-
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVG-S-----DLNK- 513 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl--~~p~~G~I~i~g~~-~-----~lr~- 513 (1064)
..++++||++.|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.+ . ..++
T Consensus 6 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 6 PILEIKNLHASVN-ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred ceEEEEeEEEEeC-CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 3699999999996 45799999999999999999999999999999999998 68999999999864 1 1222
Q ss_pred cEEEEecCCCCCc-ccHHHHhcCCCCCCC---cCCC----CCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHH
Q 001511 514 EIFYVPQRPYTAV-GTLRDQLIYPLTSDQ---EVEP----LTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 514 ~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~---~~~~----~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
.++|+||++.++. .|+.+|+.+...... .... ...+++.++++.+++. ...++.|. .+||||||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------~~LSgG~~ 157 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN-------EGFSGGEK 157 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc-------cCCCHHHH
Confidence 4889999998765 488999875422110 0000 1124567889999997 45666552 25999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh--cCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF--HDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~--~D~Il~l~~~ 650 (1064)
||++|||||+.+|+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+.. +|++++|+++
T Consensus 158 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G 228 (252)
T CHL00131 158 KRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNG 228 (252)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCC
Confidence 999999999999999999999999999999999887764 48999999999998864 8999999864
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=316.19 Aligned_cols=199 Identities=27% Similarity=0.369 Sum_probs=170.4
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i 515 (1064)
..+++++|+++| ++-.+++||||++++||+++|+|||||||||++++|+|+|+|++|+|.++|.+ .-.|..|
T Consensus 3 ~lL~v~~l~k~F-GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 3 PLLEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred ceeeeccceeec-CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 357899999999 57789999999999999999999999999999999999999999999999976 1125678
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCC------------CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSD------------QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLG 582 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~------------~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGG 582 (1064)
+--||.+-+|. .|+.||+..+.... ...+.+..+++.++|+.+||.+..++.. .+||+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A--------~~LsyG 153 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA--------GNLSYG 153 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh--------hcCChh
Confidence 88899998875 59999998763211 0012234577888999999999888754 489999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||+|+.|||||+.+|++|+||||.+||.++...++.+.+++ .|.|+++|.||+..+. .||||+||+.+
T Consensus 154 ~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G 226 (250)
T COG0411 154 QQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYG 226 (250)
T ss_pred HhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCC
Confidence 99999999999999999999999999999988888776654 3699999999999875 79999999865
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=311.40 Aligned_cols=171 Identities=25% Similarity=0.398 Sum_probs=149.0
Q ss_pred cEEEEeeEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC--CCCccEEEeCCCC--ccccccEE
Q 001511 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVG--SDLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~---~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~--~p~~G~I~i~g~~--~~lr~~i~ 516 (1064)
.|+++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.+ ..+++.++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 5899999999974 267999999999999999999999999999999999986 4899999999965 34567899
Q ss_pred EEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
|++|++.++. .|++||+.++.. ++ +||||||||++||||++.
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~----------------~~---------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSAL----------------LR---------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred EecccCccccCCcHHHHHHHHHH----------------Hh---------------------cCCHHHhHHHHHHHHHhc
Confidence 9999997765 599999975310 00 599999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhH--HHhcCEEEEEeCCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPAL--VAFHDVVLSLDGEG 651 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~--i~~~D~Il~l~~~g 651 (1064)
+|+++||||||++||+.++..+.+.+++ .|+|+|++||+++. ...+|++++|+++|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g 186 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGG 186 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCC
Confidence 9999999999999999999999887764 48999999999983 56899999998644
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=311.99 Aligned_cols=170 Identities=31% Similarity=0.452 Sum_probs=149.2
Q ss_pred cEEEEeeEEEcCC-----CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC--CCCccEEEeCCCC---ccccc
Q 001511 444 YIEFSGVKVVTPT-----GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVG---SDLNK 513 (1064)
Q Consensus 444 ~i~~~nvs~~y~~-----~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~--~p~~G~I~i~g~~---~~lr~ 513 (1064)
.++++||++.|++ ++++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.+ ...++
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 4899999999975 368999999999999999999999999999999999999 9999999999975 24567
Q ss_pred cEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 514 EIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 514 ~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
.++|+||++.++. .|++||+.++.. + .+||||||||++||||
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~----------------~---------------------~~LS~G~~qrv~lara 125 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAK----------------L---------------------RGLSGGERKRVSIALE 125 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHH----------------h---------------------ccCCHHHHHHHHHHHH
Confidence 8999999998765 599999864310 0 0499999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChh-HH-HhcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPA-LV-AFHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~-~i-~~~D~Il~l~~~ 650 (1064)
|+.+|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++ .+ ..+|++++|+++
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G 188 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQG 188 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCC
Confidence 9999999999999999999999998887764 4899999999996 44 579999999874
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=302.94 Aligned_cols=198 Identities=26% Similarity=0.346 Sum_probs=168.5
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
+|+.+|++++- .++.+|+++||++++||.++|+||||+|||||+|+|+|...|++|++.++|.+ .++.++-+.
T Consensus 1 mi~a~nls~~~-~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 1 MIRAENLSYSL-AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred CeeeeeeEEEe-ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 47889999876 46789999999999999999999999999999999999999999999999986 345577899
Q ss_pred EecCCCC-CcccHHHHhcCCCCCCCcCCC-CCHH-HHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 518 VPQRPYT-AVGTLRDQLIYPLTSDQEVEP-LTHG-GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 518 v~Q~p~l-~~~Ti~eni~~~~~~~~~~~~-~~~~-~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+||+..+ |.-|+.|.+.++...+....+ ..++ -+.+++..+++..+..+.- .+|||||||||.+||.|.
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y--------~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY--------RTLSGGEQQRVQLARVLA 151 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch--------hhcCchHHHHHHHHHHHH
Confidence 9999875 788999999998765433222 1233 3667999999999988753 379999999999999997
Q ss_pred c------CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 595 H------KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 595 ~------~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
. ++++|+||||||+||...+..++++.++ .|..|+.|-||+++. .+||+|++|.++
T Consensus 152 Ql~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~G 217 (259)
T COG4559 152 QLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQG 217 (259)
T ss_pred HccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCC
Confidence 5 4569999999999999999998887665 589999999999986 489999999875
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=318.81 Aligned_cols=199 Identities=27% Similarity=0.334 Sum_probs=154.8
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC--CCCccEEEeCCCCc------c-cccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPGVGS------D-LNKE 514 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~--~p~~G~I~i~g~~~------~-lr~~ 514 (1064)
+|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|.+- . .+..
T Consensus 1 ~i~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 1 MLSIKDLHVSVE-DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred CeEEEEEEEEeC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 378999999996 467999999999999999999999999999999999994 69999999999651 1 2356
Q ss_pred EEEEecCCCCCcc-cHHHHhcCCCCC---CCcCCC----CCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHH
Q 001511 515 IFYVPQRPYTAVG-TLRDQLIYPLTS---DQEVEP----LTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 515 i~~v~Q~p~l~~~-Ti~eni~~~~~~---~~~~~~----~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
++|++|++.++.. |..+++...... ...... ...+.+.+.++.+++. ++.++.+ ..+|||||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-------~~~LS~G~~q 152 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV-------NVGFSGGEKK 152 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC-------CCCCCHHHHH
Confidence 9999999876542 444443221100 000000 1134456778888884 3333332 1369999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh--cCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF--HDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~--~D~Il~l~~~ 650 (1064)
|++||||++++|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+.. +|+|++|+++
T Consensus 153 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g 222 (248)
T PRK09580 153 RNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQG 222 (248)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECC
Confidence 99999999999999999999999999999998886653 47999999999998875 8999999764
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=308.71 Aligned_cols=163 Identities=34% Similarity=0.486 Sum_probs=142.0
Q ss_pred EEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc------cccccEEEEe
Q 001511 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------DLNKEIFYVP 519 (1064)
Q Consensus 446 ~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~------~lr~~i~~v~ 519 (1064)
+++||++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+- .+++.++|+|
T Consensus 1 ~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 79 (180)
T cd03214 1 EVENLSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP 79 (180)
T ss_pred CeeEEEEEECC-eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence 47899999964 6799999999999999999999999999999999999999999999998531 1234466666
Q ss_pred cCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 520 QRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 520 Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
| +++.+++.++.++.+ .+||||||||++|||||+.+|++
T Consensus 80 q---------------------------------~l~~~gl~~~~~~~~--------~~LS~G~~qrl~laral~~~p~l 118 (180)
T cd03214 80 Q---------------------------------ALELLGLAHLADRPF--------NELSGGERQRVLLARALAQEPPI 118 (180)
T ss_pred H---------------------------------HHHHcCCHhHhcCCc--------ccCCHHHHHHHHHHHHHhcCCCE
Confidence 5 677888887776655 48999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA---M-GTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+||||||++||+.+.+.+.+.+++ . +.|+|++||+++.+ ..+|++++++++
T Consensus 119 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g 174 (180)
T cd03214 119 LLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDG 174 (180)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999998887754 3 78999999999987 679999999864
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=317.34 Aligned_cols=191 Identities=21% Similarity=0.290 Sum_probs=155.3
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCC-C
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP-Y 523 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p-~ 523 (1064)
+.++|+++.|. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +....+.. +
T Consensus 23 l~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~------~~~~~~~~~~ 95 (224)
T cd03220 23 LGILGRKGEVG-EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV------SSLLGLGGGF 95 (224)
T ss_pred hhhhhhhhhcC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE------chhhcccccC
Confidence 67888888874 4689999999999999999999999999999999999999999999999953 11111122 2
Q ss_pred CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEe
Q 001511 524 TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILD 603 (1064)
Q Consensus 524 l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLD 603 (1064)
.+..|++||+.++...........++++.++++.+++.+..++.+ .+||||||||++||||++.+|+++|||
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgG~~qrv~laral~~~p~llllD 167 (224)
T cd03220 96 NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPV--------KTYSSGMKARLAFAIATALEPDILLID 167 (224)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 345799999986532111111122345778889999988777765 389999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 604 ECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 604 EPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||++||+.++..+.+.+++ .|.|+|++||+++.+. .+|++++++++
T Consensus 168 EP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 218 (224)
T cd03220 168 EVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKG 218 (224)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999998887754 3789999999999875 69999999864
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=352.57 Aligned_cols=195 Identities=24% Similarity=0.296 Sum_probs=163.9
Q ss_pred EEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccEEEEe
Q 001511 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIFYVP 519 (1064)
Q Consensus 447 ~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i~~v~ 519 (1064)
++|+++.|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..+++.++|+|
T Consensus 1 ~~nl~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeC-CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 368899985 4679999999999999999999999999999999999999999999999964 12356799999
Q ss_pred cCCCCC-cccHHHHhcCCCCCC-Cc--CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 520 QRPYTA-VGTLRDQLIYPLTSD-QE--VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 520 Q~p~l~-~~Ti~eni~~~~~~~-~~--~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
|++.++ ..|++||+.++.... .. ......+++.++++.+++.+..++.+ .+|||||||||+|||||+.
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV--------ATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch--------hhCCHHHHHHHHHHHHHHh
Confidence 998765 469999998764211 10 11112346778899999987666655 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|++|||||||++||+.+..++.+.+++ .|.|+|+|||+++.+. .||++++|+++
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G 210 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDG 210 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999887754 4899999999999875 69999999864
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=318.17 Aligned_cols=183 Identities=31% Similarity=0.393 Sum_probs=151.0
Q ss_pred eeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC----CccEEEeCCCC---ccc-cccEEEEecCCC--CC-ccc
Q 001511 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL----VSGHIAKPGVG---SDL-NKEIFYVPQRPY--TA-VGT 528 (1064)
Q Consensus 460 ~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p----~~G~I~i~g~~---~~l-r~~i~~v~Q~p~--l~-~~T 528 (1064)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ .+. ++.++|++|++. ++ ..|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57899999999999999999999999999999999999 89999999965 122 358999999984 32 359
Q ss_pred HHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh---hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCC
Q 001511 529 LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE---YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605 (1064)
Q Consensus 529 i~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~---~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEP 605 (1064)
+.+|+.+.............+++.++++.+++. +..++.+ .+||||||||++||||++.+|+++|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--------~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYP--------FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCCh--------hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999886542211111112345688899999997 4555544 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 606 TSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 606 TSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|++||+.++..+.+.+++ .|+|+|++||+++.+. .+|++++|+++
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G 202 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDG 202 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999998887654 3789999999999885 69999999864
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=309.77 Aligned_cols=176 Identities=22% Similarity=0.317 Sum_probs=147.5
Q ss_pred cEEEEeeEEEcCC---CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC---CCccEEEeCCCC-----cccc
Q 001511 444 YIEFSGVKVVTPT---GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---LVSGHIAKPGVG-----SDLN 512 (1064)
Q Consensus 444 ~i~~~nvs~~y~~---~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~---p~~G~I~i~g~~-----~~lr 512 (1064)
.+.++||+|.|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+ ...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 4789999999974 4679999999999999999999999999999999999999 899999999964 1346
Q ss_pred ccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001511 513 KEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1064)
Q Consensus 513 ~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1064)
+.++|+||++.++. .|++||+.++... . .++.+ .+||||||||++|||
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~----------------~-------~~~~~--------~~LS~Ge~qrl~lar 131 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRC----------------K-------GNEFV--------RGISGGERKRVSIAE 131 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhh----------------c-------cccch--------hhCCHHHHHHHHHHH
Confidence 78999999987765 5999999764210 0 12222 479999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---c-CcEEEEE-ccChhHH-HhcCEEEEEeCC
Q 001511 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVRA---M-GTSCITI-SHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 592 AL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~-g~TvI~I-tH~l~~i-~~~D~Il~l~~~ 650 (1064)
||+++|+++||||||++||+.+++.+.+.+++ . +.|+|++ +|+.+.+ +.+|++++|+++
T Consensus 132 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G 196 (202)
T cd03233 132 ALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEG 196 (202)
T ss_pred HHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECC
Confidence 99999999999999999999999998887764 2 5676665 5555554 679999999874
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=304.26 Aligned_cols=198 Identities=22% Similarity=0.312 Sum_probs=161.4
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i 515 (1064)
.+++++||+..|. ..++|++|||++++||+++|+|+||+|||||+|+|+|+.+|.+|+|.++|.| ...|..|
T Consensus 2 ~mL~v~~l~~~YG-~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGYG-KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred CceeEEeEeeccc-ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 4689999999984 5789999999999999999999999999999999999999999999999976 2346789
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcC-ChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~-L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL 593 (1064)
+||||.-.+|. .||.||+..+...... +......++++.+.+- |.+..++ .+.+|||||||-+||||||
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~--------~aG~LSGGEQQMLAiaRAL 151 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQ--------RAGTLSGGEQQMLAIARAL 151 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcC--------cccCCChHHHHHHHHHHHH
Confidence 99999998775 6999999976433211 0111112444544442 2333332 3568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 594 YHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 594 ~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+.+|++|+|||||.||-|...++|.+.+++ .|.||++|.++...+ +.+|+.++|+++
T Consensus 152 m~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~G 213 (237)
T COG0410 152 MSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENG 213 (237)
T ss_pred hcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCC
Confidence 999999999999999999999998877653 378999999999876 579999999975
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=352.93 Aligned_cols=197 Identities=26% Similarity=0.317 Sum_probs=164.2
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC--CCCccEEEeCC----------------
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW--PLVSGHIAKPG---------------- 506 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~--~p~~G~I~i~g---------------- 506 (1064)
|+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+|+|+|++ +|++|+|.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 47899999995 468999999999999999999999999999999999997 79999999872
Q ss_pred -------CC----------------ccccccEEEEecC-CCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh
Q 001511 507 -------VG----------------SDLNKEIFYVPQR-PYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 561 (1064)
Q Consensus 507 -------~~----------------~~lr~~i~~v~Q~-p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~ 561 (1064)
.+ ..+++.++|+||+ +.++ ..|+.||+.++...........++++.++++.+|++
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 10 0135679999998 4454 469999998754221111112345788899999999
Q ss_pred hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhH
Q 001511 562 YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPAL 637 (1064)
Q Consensus 562 ~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~ 637 (1064)
++.++.|. +|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.+++ .|.|+|+||||++.
T Consensus 160 ~~~~~~~~--------~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~ 231 (520)
T TIGR03269 160 HRITHIAR--------DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231 (520)
T ss_pred hhhhcCcc--------cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 88888774 8999999999999999999999999999999999999998776643 48999999999998
Q ss_pred HH-hcCEEEEEeCC
Q 001511 638 VA-FHDVVLSLDGE 650 (1064)
Q Consensus 638 i~-~~D~Il~l~~~ 650 (1064)
+. .||+|++|+++
T Consensus 232 ~~~~~d~i~~l~~G 245 (520)
T TIGR03269 232 IEDLSDKAIWLENG 245 (520)
T ss_pred HHHhcCEEEEEeCC
Confidence 85 69999999864
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=350.39 Aligned_cols=197 Identities=23% Similarity=0.328 Sum_probs=164.4
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC--CccEEEeCCCC-c------cccccE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL--VSGHIAKPGVG-S------DLNKEI 515 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p--~~G~I~i~g~~-~------~lr~~i 515 (1064)
|+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ . ..++.+
T Consensus 2 l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 2 LEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEEEeEEEEeC-CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 78999999995 46799999999999999999999999999999999999987 79999999964 1 124679
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCC----cCCCCCHHHHHHHHHhcCChhHH-hcCCCCcccCCCCCcChHHHHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQ----EVEPLTHGGMVELLKNVDLEYLL-DRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~----~~~~~~~~~i~~~l~~~~L~~~~-~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
+||||++.++. .|+.||+.++..... .......+++.++++.+++.+.. ++.+ .+||||||||++|
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~~qrv~i 152 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV--------GDYGGGQQQLVEI 152 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch--------hhCCHHHHHHHHH
Confidence 99999987654 599999987643210 00111235677899999997643 3434 3899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||+.+|+++||||||++||+.+...+.+.+++ .|.|+|+|||+++.+. .||+|++|+++
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G 217 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDG 217 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999887654 5899999999999875 69999999864
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=351.23 Aligned_cols=199 Identities=26% Similarity=0.339 Sum_probs=165.7
Q ss_pred CcEEEEeeEEEcCC----CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeC-CCC----c----
Q 001511 443 NYIEFSGVKVVTPT----GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP-GVG----S---- 509 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~----~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~-g~~----~---- 509 (1064)
++++++||++.|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ |.+ .
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 47999999999952 2579999999999999999999999999999999999999999999995 521 0
Q ss_pred ----cccccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChh-----HHhcCCCCcccCCCCCc
Q 001511 510 ----DLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY-----LLDRYPPEKEINWGDEL 579 (1064)
Q Consensus 510 ----~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~-----~~~~~p~~~~~~~g~~L 579 (1064)
..+++++|+||++.++. .|+.||+.++.... ......++++.++++.+++.+ +.++.| .+|
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~--------~~L 428 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE-LPDELARMKAVITLKMVGFDEEKAEEILDKYP--------DEL 428 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCCCCCccchhhhhCCh--------hhC
Confidence 13467999999987665 69999998642111 111112356778999999964 566666 389
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||||||++|||||+.+|++|||||||++||+.+.+.+.+.+++ .|.|+|+|||+++.+. .||++++|+++
T Consensus 429 SgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G 504 (520)
T TIGR03269 429 SEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDG 504 (520)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999887743 4899999999999875 69999999864
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=318.95 Aligned_cols=190 Identities=24% Similarity=0.314 Sum_probs=158.4
Q ss_pred EEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEe
Q 001511 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVP 519 (1064)
Q Consensus 446 ~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~ 519 (1064)
+++||++. .+|+|+||++++||+++|+||||||||||+++|+|++++ +|+|.++|.+ ..+++.++|+|
T Consensus 2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~ 75 (248)
T PRK03695 2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLS 75 (248)
T ss_pred cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEec
Confidence 46677763 289999999999999999999999999999999999965 8999999964 12346799999
Q ss_pred cCCCC-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc---
Q 001511 520 QRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH--- 595 (1064)
Q Consensus 520 Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~--- 595 (1064)
|++.+ +..|+.+|+.++.... .......+++.++++.+++.+..++.+ .+||||||||++|||||+.
T Consensus 76 q~~~~~~~~tv~~nl~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 76 QQQTPPFAMPVFQYLTLHQPDK-TRTEAVASALNEVAEALGLDDKLGRSV--------NQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred ccCccCCCccHHHHHHhcCccC-CCcHHHHHHHHHHHHHcCCHhHhcCCc--------ccCCHHHHHHHHHHHHHhcccc
Confidence 99854 4679999998764221 111122456788999999988777766 3899999999999999997
Q ss_pred ----CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 596 ----KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 596 ----~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+|+++||||||++||+.++..+.+.+++ .|.|+|++||+++.+ ..||++++|+++
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G 209 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQG 209 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 6799999999999999999998887754 489999999999965 579999999875
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=349.14 Aligned_cols=190 Identities=22% Similarity=0.245 Sum_probs=163.7
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
+|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .+.++.++|
T Consensus 3 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLS-DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcC-CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 589999999996 4569999999999999999999999999999999999999999999998853 123456999
Q ss_pred EecCCCC---------CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001511 518 VPQRPYT---------AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1064)
Q Consensus 518 v~Q~p~l---------~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1064)
+||++.. +..|+++|+..+. ..++++.++++.+++++..++.+. +||||||||++
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~--------~LSgG~~qrv~ 145 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV--------KDPARCEQLAQQFGITALLDRRFK--------YLSTGETRKTL 145 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch--------hHHHHHHHHHHHcCCHhhhhCCcc--------cCCHHHHHHHH
Confidence 9998753 1347888775431 234678889999999988888774 89999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 589 IARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||||+.+|+++||||||++||+.+.+++.+.+++ .|.|+|+|||+++.+. .||++++|+++
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G 211 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADC 211 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999998887765 3899999999999875 69999999864
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=290.54 Aligned_cols=198 Identities=26% Similarity=0.370 Sum_probs=172.1
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------------ccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------------SDL 511 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------------~~l 511 (1064)
.|+++|+++.| +...+|.||+|+.+.||.+.+.||||+|||||+|.|.=+.-|.+|+..+-|.. .++
T Consensus 2 sirv~~in~~y-g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFY-GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEccccccc-ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 37899999988 45679999999999999999999999999999999999999999999987742 257
Q ss_pred cccEEEEecCCCCC-cccHHHHhcCC-CCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 512 NKEIFYVPQRPYTA-VGTLRDQLIYP-LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 512 r~~i~~v~Q~p~l~-~~Ti~eni~~~-~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
|+++|+|||.-.+. ..||-||+... ....+..+.....+..++|+++.+.++.+++|. .|||||+|||||
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~pl--------hlsggqqqrvai 152 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPL--------HLSGGQQQRVAI 152 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCce--------ecccchhhhHHH
Confidence 89999999998775 57999999863 222233333455678899999999999999996 799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||+.+|++|++||||++|||+...++.+.+++ .|+|-+++||..+.++ .+.+++.|+++
T Consensus 153 aralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g 217 (242)
T COG4161 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENG 217 (242)
T ss_pred HHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecC
Confidence 9999999999999999999999999988777765 5999999999999886 58999999875
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=316.93 Aligned_cols=182 Identities=26% Similarity=0.320 Sum_probs=153.8
Q ss_pred EcCCCCeeeeeceEEEe-----CCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCC-Cc
Q 001511 453 VTPTGNVLVENLTLKVE-----PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT-AV 526 (1064)
Q Consensus 453 ~y~~~~~~L~~vsl~i~-----~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l-~~ 526 (1064)
.|++..+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .|+|+||++.. +.
T Consensus 2 ~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------~i~~~~q~~~~~~~ 75 (246)
T cd03237 2 TYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------TVSYKPQYIKADYE 75 (246)
T ss_pred CCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------eEEEecccccCCCC
Confidence 46655567788888886 79999999999999999999999999999999999984 69999999874 57
Q ss_pred ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCC
Q 001511 527 GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606 (1064)
Q Consensus 527 ~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPT 606 (1064)
.|+.||+.+...... ...+...++++.+++.+..++.+ .+||||||||++|||||+.+|+++||||||
T Consensus 76 ~tv~e~l~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~--------~~LSgGe~qrv~iaraL~~~p~llllDEPt 143 (246)
T cd03237 76 GTVRDLLSSITKDFY----THPYFKTEIAKPLQIEQILDREV--------PELSGGELQRVAIAACLSKDADIYLLDEPS 143 (246)
T ss_pred CCHHHHHHHHhhhcc----ccHHHHHHHHHHcCCHHHhhCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 899999975432110 11234667899999988877766 389999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCCCc
Q 001511 607 SAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGEGE 652 (1064)
Q Consensus 607 SaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~ 652 (1064)
++||+.++..+.+.+++ .++|+|+|||+++.+. .||++++|+++.+
T Consensus 144 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~ 194 (246)
T cd03237 144 AYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPS 194 (246)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCe
Confidence 99999999998887764 3899999999999886 6999999987643
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=306.91 Aligned_cols=166 Identities=28% Similarity=0.392 Sum_probs=142.7
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhccc--CCCCccEEEeCCCC-c-----c-ccccE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVG-S-----D-LNKEI 515 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl--~~p~~G~I~i~g~~-~-----~-lr~~i 515 (1064)
++++|+++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|.+ . . .+..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 46899999996 46799999999999999999999999999999999999 58999999999964 1 1 23469
Q ss_pred EEEecCCCCCcc-cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 516 FYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 516 ~~v~Q~p~l~~~-Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+|+||+|.++.+ ++++++ +..+ .+||||||||++||||++
T Consensus 80 ~~v~q~~~~~~~~~~~~~l-------------------------------~~~~--------~~LS~G~~qrv~laral~ 120 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFL-------------------------------RYVN--------EGFSGGEKKRNEILQLLL 120 (200)
T ss_pred EEeecChhhccCccHHHHH-------------------------------hhcc--------ccCCHHHHHHHHHHHHHh
Confidence 999999977654 444443 1122 269999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH--hcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA--FHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~--~~D~Il~l~~~ 650 (1064)
.+|+++||||||++||+.+...+.+.+++ .+.|+|++||+++.+. .+|++++|+++
T Consensus 121 ~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G 181 (200)
T cd03217 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDG 181 (200)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999888764 3899999999999987 69999999864
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=350.47 Aligned_cols=200 Identities=21% Similarity=0.259 Sum_probs=165.2
Q ss_pred CcEEEEeeEEEcCC--CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC-CCccEEEeCCCC-------cccc
Q 001511 443 NYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-LVSGHIAKPGVG-------SDLN 512 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~--~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~-p~~G~I~i~g~~-------~~lr 512 (1064)
..|+++||++.|+. ++++++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+ ...+
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 46999999999852 4579999999999999999999999999999999999998 599999999854 1234
Q ss_pred ccEEEEecCCC---CC-cccHHHHhcCCCCC-C-C---cCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChH
Q 001511 513 KEIFYVPQRPY---TA-VGTLRDQLIYPLTS-D-Q---EVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLG 582 (1064)
Q Consensus 513 ~~i~~v~Q~p~---l~-~~Ti~eni~~~~~~-~-~---~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGG 582 (1064)
+.++|+||++. ++ ..|+.||+.++... . . .......+++.++++.+++. +..++.+ .+||||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG 409 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI--------ARLSGG 409 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc--------ccCCHH
Confidence 67999999962 44 56999999875311 0 0 00111235678899999996 4666666 389999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||++|||||+.+|++|||||||++||+.+++.+.+.++ +.|.|+|+||||++.+. .||++++|+++
T Consensus 410 ~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G 481 (506)
T PRK13549 410 NQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEG 481 (506)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999887765 35899999999999875 69999999864
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=292.84 Aligned_cols=227 Identities=22% Similarity=0.320 Sum_probs=184.7
Q ss_pred cEEEEeeEEEcCCC--------CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----cc
Q 001511 444 YIEFSGVKVVTPTG--------NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SD 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~--------~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~ 510 (1064)
.++++|+++.|... ..+++.|||++++|+.+||+|.||||||||.|+|+|..+|++|+|.+||.. .+
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 46788888866421 358999999999999999999999999999999999999999999999964 22
Q ss_pred c-cccEEEEecCCCC---CcccHHHHhcCCCCCCCc-CCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHH
Q 001511 511 L-NKEIFYVPQRPYT---AVGTLRDQLIYPLTSDQE-VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 511 l-r~~i~~v~Q~p~l---~~~Ti~eni~~~~~~~~~-~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
. .++|-++||||.. |...|..-+..|...... .+....+++.+.|+.+||- +..+-+|+ .||.|||
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~--------~la~~QK 155 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH--------MLAPGQK 155 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchh--------hcCchhH
Confidence 2 3789999999963 334566656666553322 2234567889999999984 66666674 7999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH----HHhcCcEEEEEccChhHHHh-cCEEEEEeCCCceEEeecC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAK----VRAMGTSCITISHRPALVAF-HDVVLSLDGEGEWRVHDKR 659 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~----l~~~g~TvI~ItH~l~~i~~-~D~Il~l~~~g~~~~~~~~ 659 (1064)
||||+||||+.+|+|+|.||+..+||...+.++.++ .++.|.+.|.|+.++..+++ +|.|+||+++
T Consensus 156 QRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG--------- 226 (267)
T COG4167 156 QRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEG--------- 226 (267)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecC---------
Confidence 999999999999999999999999999999887664 34569999999999999986 8999999864
Q ss_pred CCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCC
Q 001511 660 DGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASP 717 (1064)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p 717 (1064)
+++|.+.+.+++.. |.|+.|+.|+.+--
T Consensus 227 -----------------------------~vvE~G~t~~v~a~-P~~~~TkRlieShF 254 (267)
T COG4167 227 -----------------------------EVVERGSTADVLAS-PLHELTKRLIESHF 254 (267)
T ss_pred -----------------------------ceeecCChhhhhcC-CccHHHHHHHHHHh
Confidence 24555667777765 89999999998643
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=356.15 Aligned_cols=199 Identities=25% Similarity=0.344 Sum_probs=171.3
Q ss_pred cEEEEeeEEEcCCC---CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c-----cc---
Q 001511 444 YIEFSGVKVVTPTG---NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S-----DL--- 511 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~---~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~-----~l--- 511 (1064)
+++++|+++.|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 68999999999642 479999999999999999999999999999999999999999999999965 1 11
Q ss_pred -cccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 512 -NKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 512 -r~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
++.++|+||++.++. .|+.||+.++...........++++.++++.+++.+..++.|. +|||||+||++|
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~--------~LS~Gq~qrv~L 155 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPS--------QLSGGQQQRVSI 155 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcc--------cCCHHHHHHHHH
Confidence 468999999999875 5999999874321111111234567889999999988888774 899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
||||+++|+++||||||++||+.+++.+.+.+++ .|+|+|++||+++.+..||++++|+++
T Consensus 156 AraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G 219 (648)
T PRK10535 156 ARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDG 219 (648)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999998887754 489999999999999899999999874
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=350.03 Aligned_cols=194 Identities=21% Similarity=0.328 Sum_probs=163.8
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCC
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p 522 (1064)
.+|+++||++.|++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ +..|+||||+|
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----~~~i~~v~Q~~ 79 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----GIKVGYLPQEP 79 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----CCEEEEEecCC
Confidence 4799999999996357899999999999999999999999999999999999999999999875 24799999999
Q ss_pred CCCc-ccHHHHhcCCCCCC--------------CcCC----------------------CCCHHHHHHHHHhcCChhHHh
Q 001511 523 YTAV-GTLRDQLIYPLTSD--------------QEVE----------------------PLTHGGMVELLKNVDLEYLLD 565 (1064)
Q Consensus 523 ~l~~-~Ti~eni~~~~~~~--------------~~~~----------------------~~~~~~i~~~l~~~~L~~~~~ 565 (1064)
.++. .|+.||+.++.... .... ...++++.++++.+|+.. .+
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~ 158 (556)
T PRK11819 80 QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WD 158 (556)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-cc
Confidence 8765 59999998753100 0000 011345677788888853 34
Q ss_pred cCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEE
Q 001511 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVV 644 (1064)
Q Consensus 566 ~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~I 644 (1064)
+.+ .+|||||||||+|||||+.+|++|||||||++||+.+...+.+.+++.+.|+|+|||+++.+. .+|+|
T Consensus 159 ~~~--------~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i 230 (556)
T PRK11819 159 AKV--------TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWI 230 (556)
T ss_pred Cch--------hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeE
Confidence 433 489999999999999999999999999999999999999999999987789999999999886 68999
Q ss_pred EEEeCC
Q 001511 645 LSLDGE 650 (1064)
Q Consensus 645 l~l~~~ 650 (1064)
++|+++
T Consensus 231 ~~l~~g 236 (556)
T PRK11819 231 LELDRG 236 (556)
T ss_pred EEEeCC
Confidence 999964
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=348.72 Aligned_cols=197 Identities=18% Similarity=0.187 Sum_probs=163.7
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i 515 (1064)
..++++|+++.|. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..+++.+
T Consensus 264 ~~l~~~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 264 TVFEVRNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred cEEEEeCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 4799999998652 48999999999999999999999999999999999999999999999853 1235679
Q ss_pred EEEecCC---CCC-cccHHHHhcCCCCCC--------Cc-CCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcCh
Q 001511 516 FYVPQRP---YTA-VGTLRDQLIYPLTSD--------QE-VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSL 581 (1064)
Q Consensus 516 ~~v~Q~p---~l~-~~Ti~eni~~~~~~~--------~~-~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSG 581 (1064)
+||||++ .++ ..|+.||+.++.... .. ......+++.++++.+++. +..++.|. +|||
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------~LSg 412 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT--------ELSG 412 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc--------cCCh
Confidence 9999984 344 469999998753210 00 0111224577899999996 66777663 8999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 582 GEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 582 GqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||||+|||||+.+|++|||||||++||+.+.+.+.+.+++ .|.|+|+||||++.+. .||++++|+++
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G 485 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEG 485 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECC
Confidence 999999999999999999999999999999999999888754 4899999999998774 79999999864
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=347.09 Aligned_cols=193 Identities=20% Similarity=0.245 Sum_probs=163.8
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCC
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~ 523 (1064)
+|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. ..|+|+||++.
T Consensus 1 ml~i~~ls~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----~~i~~~~q~~~ 74 (530)
T PRK15064 1 MLSTANITMQFG-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----ERLGKLRQDQF 74 (530)
T ss_pred CEEEEEEEEEeC-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----CEEEEEeccCC
Confidence 378999999995 568999999999999999999999999999999999999999999999873 46999999987
Q ss_pred CCc-ccHHHHhcCCCCC-----------CCcC---------------------CCCCHHHHHHHHHhcCChhHHh-cCCC
Q 001511 524 TAV-GTLRDQLIYPLTS-----------DQEV---------------------EPLTHGGMVELLKNVDLEYLLD-RYPP 569 (1064)
Q Consensus 524 l~~-~Ti~eni~~~~~~-----------~~~~---------------------~~~~~~~i~~~l~~~~L~~~~~-~~p~ 569 (1064)
++. .|+.||+.++... .... ....++++.++++.+|+.+... +.+
T Consensus 75 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~- 153 (530)
T PRK15064 75 AFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLM- 153 (530)
T ss_pred cCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCch-
Confidence 664 5999999865310 0000 0012356778899999976443 333
Q ss_pred CcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEe
Q 001511 570 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLD 648 (1064)
Q Consensus 570 ~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~ 648 (1064)
.+||||||||++|||||+.+|++|||||||++||+.+..++.+.+++.|.|+|+||||++.+. .||+|++|+
T Consensus 154 -------~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~ 226 (530)
T PRK15064 154 -------SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLD 226 (530)
T ss_pred -------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEe
Confidence 489999999999999999999999999999999999999999999888999999999999875 699999999
Q ss_pred CC
Q 001511 649 GE 650 (1064)
Q Consensus 649 ~~ 650 (1064)
++
T Consensus 227 ~g 228 (530)
T PRK15064 227 YG 228 (530)
T ss_pred CC
Confidence 64
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=306.86 Aligned_cols=198 Identities=27% Similarity=0.354 Sum_probs=172.4
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC--ccccccEEEEecC
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--SDLNKEIFYVPQR 521 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--~~lr~~i~~v~Q~ 521 (1064)
.+++++|+++| +++.+++|+||++++|++.|++||||+||||++|+|+|+++|++|+|.++|.+ ...+.+|||+|.+
T Consensus 2 ~L~ie~vtK~F-g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEE 80 (300)
T COG4152 2 ALEIEGVTKSF-GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEE 80 (300)
T ss_pred ceEEecchhcc-CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhh
Confidence 47899999998 46789999999999999999999999999999999999999999999999975 4556799999999
Q ss_pred CCCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001511 522 PYTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1064)
Q Consensus 522 p~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1064)
--+. ..|+.|++.|-....+....+...++..+|+++++.....+.. .+||-|.+|+|.+--+++|+|+++
T Consensus 81 RGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kI--------k~LSKGnqQKIQfisaviHePeLl 152 (300)
T COG4152 81 RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKI--------KELSKGNQQKIQFISAVIHEPELL 152 (300)
T ss_pred hccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchH--------HHhhhhhhHHHHHHHHHhcCCCEE
Confidence 8775 5799999998765555444455667788889888876544433 489999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHH---HhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 601 ILDECTSAVTTDMEERFCAKV---RAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 601 iLDEPTSaLD~~~~~~l~~~l---~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||||+|||||.+.+.+.+.+ ++.|.|||++||+++-++ .||++++|+++
T Consensus 153 ILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG 206 (300)
T COG4152 153 ILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKG 206 (300)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCC
Confidence 999999999999999888765 456999999999999886 69999999875
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=333.02 Aligned_cols=199 Identities=27% Similarity=0.365 Sum_probs=166.9
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i 515 (1064)
+.++++|++++|+ +.++|+||||++.+||+++|+|+||||||||+|+|+|.|+|++|+|.++|.. +.....|
T Consensus 7 ~ll~~~~i~K~Fg-gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 7 PLLELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred ceeeeecceEEcC-CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 4789999999995 5789999999999999999999999999999999999999999999999964 2345689
Q ss_pred EEEecCCCC-CcccHHHHhcCCCCCCCc----CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 516 FYVPQRPYT-AVGTLRDQLIYPLTSDQE----VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 516 ~~v~Q~p~l-~~~Ti~eni~~~~~~~~~----~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
++|+|++.+ ++.||.|||.++...... ..+...++..++|+.+++....+. ...+||+||||-|+||
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~--------~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDT--------LVGDLSIAQRQMVEIA 157 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhh--------hhhhCCHHHHHHHHHH
Confidence 999999986 467999999887654321 112234567778888888511222 1248999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHH---HhcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 591 RLFYHKPKFAILDECTSAVTTDMEERFCAKV---RAMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 591 RAL~~~P~iliLDEPTSaLD~~~~~~l~~~l---~~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
||+..+++++|||||||+|+....+.+++.+ ++.|.++|+||||++.+ +.||+|.||.++
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG 221 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDG 221 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCC
Confidence 9999999999999999999998888877665 45799999999999987 479999999865
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=288.40 Aligned_cols=223 Identities=21% Similarity=0.349 Sum_probs=178.8
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----------c-
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----------S- 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----------~- 509 (1064)
.+.++++++++.|. +....+||||++.|||..+|||+||||||||+++|++-+.|++|+|.+.-.+ .
T Consensus 4 ~PLL~V~~lsk~Yg-~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 4 KPLLSVSGLSKLYG-PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred CcceeehhhhhhhC-CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 35789999999885 4568999999999999999999999999999999999999999999886432 0
Q ss_pred ---cccccEEEEecCCCC--C-----cccHHHHhcC-CCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCC
Q 001511 510 ---DLNKEIFYVPQRPYT--A-----VGTLRDQLIY-PLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGD 577 (1064)
Q Consensus 510 ---~lr~~i~~v~Q~p~l--~-----~~Ti~eni~~-~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~ 577 (1064)
-+|..-|||.|+|-- - .+.|.|-+.- +....+ ...++..+.|+++.++ +.++..| .
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG----~iR~~a~~WL~~VEI~~~RiDD~P--------r 150 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG----NIRAEAQDWLEEVEIDLDRIDDLP--------R 150 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhh----hHHHHHHHHHHhcccCcccccCcc--------c
Confidence 135678999999941 1 1344444321 222111 2345677889999886 4566666 4
Q ss_pred CcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEccChhHHH-hcCEEEEEeCCCc
Q 001511 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALVA-FHDVVLSLDGEGE 652 (1064)
Q Consensus 578 ~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~----~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~ 652 (1064)
.+|||||||+.|||-|+..|+++++||||.+||...++.++++++ +.|..++++|||+..++ .+|+..+|..
T Consensus 151 tFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~--- 227 (258)
T COG4107 151 TFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQ--- 227 (258)
T ss_pred ccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecC---
Confidence 899999999999999999999999999999999999999988775 46999999999999987 4777766654
Q ss_pred eEEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcC
Q 001511 653 WRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAAS 716 (1064)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~ 716 (1064)
|+++|.+.+++++.+ |.|||||-|.+++
T Consensus 228 -----------------------------------g~vve~GLTDrvLDD-P~hPYTQLLVSsv 255 (258)
T COG4107 228 -----------------------------------GQVVESGLTDRVLDD-PHHPYTQLLVSSV 255 (258)
T ss_pred -----------------------------------CCEeccccccccccC-CCCchHHHHHHHh
Confidence 445667788888875 7999999999875
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=293.09 Aligned_cols=147 Identities=35% Similarity=0.455 Sum_probs=130.7
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c------cccccEEE
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEIFY 517 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~lr~~i~~ 517 (1064)
|+++||++.|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ . ..++.++|
T Consensus 1 l~~~~l~~~~~-~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~ 79 (163)
T cd03216 1 LELRGITKRFG-GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM 79 (163)
T ss_pred CEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence 47899999996 4579999999999999999999999999999999999999999999999853 0 12345666
Q ss_pred EecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 518 v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
+|| ||||||||++||||++.+|
T Consensus 80 ~~q----------------------------------------------------------LS~G~~qrl~laral~~~p 101 (163)
T cd03216 80 VYQ----------------------------------------------------------LSVGERQMVEIARALARNA 101 (163)
T ss_pred EEe----------------------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 666 8999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+++||||||++||+.+++.+.+.+++ .|.|+|++||+++.+. .+|++++++++
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g 158 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDG 158 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999888764 3899999999999764 69999999864
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=346.06 Aligned_cols=200 Identities=19% Similarity=0.210 Sum_probs=164.2
Q ss_pred CcEEEEeeEEEcCC--CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-CccEEEeCCCC-------cccc
Q 001511 443 NYIEFSGVKVVTPT--GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIAKPGVG-------SDLN 512 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~--~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~i~g~~-------~~lr 512 (1064)
..++++|+++.|++ ++++++|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.+ ..++
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 46999999998842 35799999999999999999999999999999999999985 89999999854 1235
Q ss_pred ccEEEEecCC---CC-CcccHHHHhcCCCCC-C-C---cCCCCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChH
Q 001511 513 KEIFYVPQRP---YT-AVGTLRDQLIYPLTS-D-Q---EVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLG 582 (1064)
Q Consensus 513 ~~i~~v~Q~p---~l-~~~Ti~eni~~~~~~-~-~---~~~~~~~~~i~~~l~~~~L~~-~~~~~p~~~~~~~g~~LSGG 582 (1064)
++++|+||++ .+ +..|+++|+.++... . . .......+++.++++.+++.+ ..++.+ .+||||
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG 407 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI--------GRLSGG 407 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc--------ccCCHH
Confidence 6899999996 24 456999999875321 0 0 000112346778999999863 456655 489999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||++|||||+.+|++|||||||++||+.+.+.+.+.+++ .|.|+|++|||++.+. .||++++++++
T Consensus 408 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G 479 (500)
T TIGR02633 408 NQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEG 479 (500)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999998876543 5899999999999875 69999999864
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=308.16 Aligned_cols=174 Identities=28% Similarity=0.349 Sum_probs=147.3
Q ss_pred EEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-ccccccEEEEecCCCC---CcccHHHHhcCCCCCC-
Q 001511 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVPQRPYT---AVGTLRDQLIYPLTSD- 540 (1064)
Q Consensus 466 l~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~lr~~i~~v~Q~p~l---~~~Ti~eni~~~~~~~- 540 (1064)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .+.+++++|+||++.+ +..|+.||+.++....
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 5789999999999999999999999999999999999999975 2346789999999865 3479999998753211
Q ss_pred C---cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 001511 541 Q---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF 617 (1064)
Q Consensus 541 ~---~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l 617 (1064)
. ......++++.++++.+++.++.++.+ .+||||||||++|||||+++|+++||||||++||+.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELADRPV--------GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhcCCh--------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 0 011123456888999999988777766 37999999999999999999999999999999999999999
Q ss_pred HHHHHh---cCcEEEEEccChhHHH-hcCEEEEE
Q 001511 618 CAKVRA---MGTSCITISHRPALVA-FHDVVLSL 647 (1064)
Q Consensus 618 ~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l 647 (1064)
.+.+++ .|.|+|++||+++.+. .||+++++
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l 186 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDLAQAMATCDRVVLL 186 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 888764 4889999999999775 69999999
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=344.19 Aligned_cols=195 Identities=22% Similarity=0.278 Sum_probs=164.8
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
.+.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++. ..|+|+||+
T Consensus 320 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~-----~~i~~v~q~ 393 (552)
T TIGR03719 320 DKVIEAENLSKGFG-DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET-----VKLAYVDQS 393 (552)
T ss_pred CeEEEEeeEEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc-----eEEEEEeCC
Confidence 35799999999995 467999999999999999999999999999999999999999999998541 269999999
Q ss_pred CC-CC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 522 PY-TA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 522 p~-l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~-~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
+. ++ ..|+.||+.++....... ..+.+..++++.+++.+ ..++.| .+||||||||++|||||+.+|+
T Consensus 394 ~~~~~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgGe~qrv~la~al~~~p~ 463 (552)
T TIGR03719 394 RDALDPNKTVWEEISGGLDIIQLG--KREVPSRAYVGRFNFKGSDQQKKV--------GQLSGGERNRVHLAKTLKSGGN 463 (552)
T ss_pred ccccCCCCcHHHHHHhhccccccC--cchHHHHHHHHhCCCChhHhcCch--------hhCCHHHHHHHHHHHHHhhCCC
Confidence 73 44 469999998764321111 12334567899999964 456655 3899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCCc
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEGE 652 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~ 652 (1064)
++||||||++||+.+.+.+.+.+++.+.|+|+|||+++.+. .||+|++|+++|.
T Consensus 464 lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~ 518 (552)
T TIGR03719 464 VLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSH 518 (552)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCe
Confidence 99999999999999999999999987669999999999876 6999999987543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=341.53 Aligned_cols=189 Identities=24% Similarity=0.257 Sum_probs=165.3
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCC
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p 522 (1064)
..++++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. +.++|+||++
T Consensus 318 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----~~i~~~~q~~ 391 (530)
T PRK15064 318 NALEVENLTKGFD-NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----ANIGYYAQDH 391 (530)
T ss_pred ceEEEEeeEEeeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----eEEEEEcccc
Confidence 4799999999995 467999999999999999999999999999999999999999999999883 5799999997
Q ss_pred C--CC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 523 Y--TA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 523 ~--l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
. ++ ..|+.+|+.+... ....++++.++++.+++. +..++.+ .+||||||||++|||||+.+|+
T Consensus 392 ~~~~~~~~t~~~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgGq~qrv~la~al~~~p~ 458 (530)
T PRK15064 392 AYDFENDLTLFDWMSQWRQ-----EGDDEQAVRGTLGRLLFSQDDIKKSV--------KVLSGGEKGRMLFGKLMMQKPN 458 (530)
T ss_pred cccCCCCCcHHHHHHHhcc-----CCccHHHHHHHHHHcCCChhHhcCcc--------cccCHHHHHHHHHHHHHhcCCC
Confidence 4 33 3699999864211 112356788899999994 6667766 4899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|||||||++||+.+.+.+.+.+++.+.|+|+|||+++.+. .||++++|+++
T Consensus 459 lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g 511 (530)
T PRK15064 459 VLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPD 511 (530)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999888789999999999876 69999999864
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=344.57 Aligned_cols=203 Identities=22% Similarity=0.333 Sum_probs=158.6
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCC
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p 522 (1064)
.+++++||++.|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +..|+||||+|
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----~~~i~~v~Q~~ 77 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----GIKVGYLPQEP 77 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----CCEEEEEeccC
Confidence 3689999999996456899999999999999999999999999999999999999999999976 24799999999
Q ss_pred CCCc-ccHHHHhcCCCCCC--------------CcCCCC------CHHHHHHHHHhcCChhH-------HhcCCCCcccC
Q 001511 523 YTAV-GTLRDQLIYPLTSD--------------QEVEPL------THGGMVELLKNVDLEYL-------LDRYPPEKEIN 574 (1064)
Q Consensus 523 ~l~~-~Ti~eni~~~~~~~--------------~~~~~~------~~~~i~~~l~~~~L~~~-------~~~~p~~~~~~ 574 (1064)
.++. .|+.||+.++.... ...... ..+++.+.++.+++.+. ++....+....
T Consensus 78 ~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 157 (552)
T TIGR03719 78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDA 157 (552)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccC
Confidence 8764 69999998753210 000000 01233344444443211 11110000011
Q ss_pred CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 575 ~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
...+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++.+.|+|+|||+++.+. .||++++|+++
T Consensus 158 ~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g 234 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRG 234 (552)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECC
Confidence 23589999999999999999999999999999999999999999999887789999999999886 58999999864
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=312.69 Aligned_cols=178 Identities=18% Similarity=0.256 Sum_probs=148.8
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCC-cccHHHHhcCC
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTA-VGTLRDQLIYP 536 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~-~~Ti~eni~~~ 536 (1064)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+++++|++.++ ..|+.+|+.++
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g-------~~~~~~~~~~~~~~~tv~enl~~~ 109 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-------EVSVIAISAGLSGQLTGIENIEFK 109 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC-------EEeEEecccCCCCCCcHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999998 367888888665 46999999764
Q ss_pred CCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 001511 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616 (1064)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~ 616 (1064)
............+.+.++++.+++.+..++.+ .+|||||+||++||||++.+|++|||||||++||+.+.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--------~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~ 181 (264)
T PRK13546 110 MLCMGFKRKEIKAMTPKIIEFSELGEFIYQPV--------KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQK 181 (264)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhcCCc--------ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHH
Confidence 22111111112234556788888888777655 4899999999999999999999999999999999999998
Q ss_pred HHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 617 FCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 617 l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+.+.+ .|.|+|++||++..+. .+|+|++|+++
T Consensus 182 l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 182 CLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred HHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 8887654 4899999999999875 69999999865
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=343.31 Aligned_cols=197 Identities=21% Similarity=0.263 Sum_probs=165.6
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
...++++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++. ..|||+||+
T Consensus 322 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----~~i~~v~q~ 395 (556)
T PRK11819 322 DKVIEAENLSKSFG-DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET-----VKLAYVDQS 395 (556)
T ss_pred CeEEEEEeEEEEEC-CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----eEEEEEeCc
Confidence 35799999999995 467999999999999999999999999999999999999999999998542 269999999
Q ss_pred C-CCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 522 P-YTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 522 p-~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~-~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
+ .++ ..|+.||+.++....... ..+.+..++++.+++.+ ..++.| .+||||||||++||||++.+|+
T Consensus 396 ~~~~~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~~qrv~la~al~~~p~ 465 (556)
T PRK11819 396 RDALDPNKTVWEEISGGLDIIKVG--NREIPSRAYVGRFNFKGGDQQKKV--------GVLSGGERNRLHLAKTLKQGGN 465 (556)
T ss_pred hhhcCCCCCHHHHHHhhccccccc--ccHHHHHHHHHhCCCChhHhcCch--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 7 444 469999998764221111 12334567899999963 456666 3899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCCceE
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEGEWR 654 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~ 654 (1064)
++||||||++||+.+...+.+.+++.+.|+|+|||+++.+. .||+|++++++|...
T Consensus 466 lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 466 VLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence 99999999999999999999999887569999999999875 699999998755444
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=374.38 Aligned_cols=200 Identities=20% Similarity=0.232 Sum_probs=173.9
Q ss_pred CcEEEEeeEEEcC-CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEE
Q 001511 443 NYIEFSGVKVVTP-TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIF 516 (1064)
Q Consensus 443 ~~i~~~nvs~~y~-~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~ 516 (1064)
..|+++||++.|+ +++++|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ .+.|+.+|
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE
Confidence 4699999999996 35789999999999999999999999999999999999999999999999965 23567899
Q ss_pred EEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
|+||++.++. .|++||+.++....+......++++.++++.+|+++..++.+. +||||||||++|||||+.
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~--------~LSGGqKQRLsLArALi~ 1078 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQ--------DLSGGMQRKLSVAIAFVG 1078 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChh--------hCCHHHHHHHHHHHHHHc
Confidence 9999998775 6999999875432221111234568889999999988888774 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 596 KPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|+++||||||+|||+.+++.+.+.+++ .|+|+|++||+++.+. .+|+|++|+++
T Consensus 1079 ~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~G 1136 (2272)
T TIGR01257 1079 DAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQG 1136 (2272)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999988865 3899999999999886 69999999875
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=329.52 Aligned_cols=194 Identities=20% Similarity=0.210 Sum_probs=159.7
Q ss_pred CCcEEEEeeEEEcCCC--CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEe
Q 001511 442 ANYIEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP 519 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~--~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~ 519 (1064)
..+++++|+++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .++.
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~-------~~i~ 91 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA-------ALIA 91 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEe-------eeEE
Confidence 3479999999998764 469999999999999999999999999999999999999999999999853 1233
Q ss_pred cCCCC-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
+.+.+ ...|++||+.+.............+++.++++.+++.++.++.+ .+||||||||++|||||+.+|+
T Consensus 92 ~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~--------~~LSGGQrQRVaLArAL~~~P~ 163 (549)
T PRK13545 92 ISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPV--------KTYSSGMKSRLGFAISVHINPD 163 (549)
T ss_pred eccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCc--------ccCCHHHHHHHHHHHHHHhCCC
Confidence 34433 34699999976432111111112345667899999998888766 4899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|||||||++||+.++..+.+.+++ .|.|+|++||+++.+. .||++++|+++
T Consensus 164 LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~G 219 (549)
T PRK13545 164 ILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYG 219 (549)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999998887754 4899999999999875 69999999864
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=280.70 Aligned_cols=142 Identities=25% Similarity=0.443 Sum_probs=132.5
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCC
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT 524 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l 524 (1064)
++++|+++.|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++|+||
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----~~i~~~~~---- 70 (144)
T cd03221 1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----VKIGYFEQ---- 70 (144)
T ss_pred CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----EEEEEEcc----
Confidence 468999999854 57999999999999999999999999999999999999999999999983 47999988
Q ss_pred CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeC
Q 001511 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1064)
Q Consensus 525 ~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDE 604 (1064)
||+||+||++|||||+.+|+++||||
T Consensus 71 ------------------------------------------------------lS~G~~~rv~laral~~~p~illlDE 96 (144)
T cd03221 71 ------------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDE 96 (144)
T ss_pred ------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 89999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 605 CTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 605 PTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++||+.+...+.+.+++.+.|+|++||+++.+. .+|++++|+++
T Consensus 97 P~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d~v~~l~~g 143 (144)
T cd03221 97 PTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVATKIIELEDG 143 (144)
T ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999888899999999999885 58999999864
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=339.86 Aligned_cols=194 Identities=20% Similarity=0.292 Sum_probs=161.1
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i 515 (1064)
..++++||++ ++++|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ ..+++++
T Consensus 256 ~~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 256 VRLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred cEEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 4689999984 37999999999999999999999999999999999999999999999854 1235679
Q ss_pred EEEecCCC---C-CcccHHHHhcCCCCCC--C----cCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHH
Q 001511 516 FYVPQRPY---T-AVGTLRDQLIYPLTSD--Q----EVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 516 ~~v~Q~p~---l-~~~Ti~eni~~~~~~~--~----~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
+||||+|. + +..|+.||+.++.... . ......++++.++++.+++. +..++.+ .+||||||
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgGek 401 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI--------GLLSGGNQ 401 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch--------hhCCHHHH
Confidence 99999972 3 4569999998753110 0 00111235678899999994 5666665 38999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++|||||+.+|++|||||||++||+.+++.+.+.+++ .|.|+|++|||++.+. .||++++|+++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 471 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEG 471 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECC
Confidence 999999999999999999999999999999998887764 4889999999999875 69999999864
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=370.10 Aligned_cols=201 Identities=20% Similarity=0.245 Sum_probs=172.2
Q ss_pred CCcEEEEeeEEEcCC-CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccE
Q 001511 442 ANYIEFSGVKVVTPT-GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEI 515 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~-~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i 515 (1064)
...|+++||++.|++ ++++|+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.+ .+.+++|
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE
Confidence 457999999999965 3689999999999999999999999999999999999999999999999964 2346789
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
||+||++.++. .|++||+.+.....+...+..++.+.++++.+++.++.++.+. +||||||||++|||||+
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~--------~LSGGqKqRLslA~ALi 2086 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAG--------TYSGGNKRKLSTAIALI 2086 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChh--------hCCHHHHHHHHHHHHHh
Confidence 99999987764 6999999864322221111223456788999999988888773 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
.+|+++||||||+|||+.+++.+.+.+++ .|+|+|++||+++.++ .||+|++|+++
T Consensus 2087 ~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G 2146 (2272)
T TIGR01257 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKG 2146 (2272)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999887754 4899999999999886 69999999864
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=321.19 Aligned_cols=200 Identities=28% Similarity=0.361 Sum_probs=170.2
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i 515 (1064)
..++++|+++.|| +..+++||||+|++||+.||+|+||+|||||+++|.|+|+|++|+|.++|+. +..+..|
T Consensus 3 ~~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 3 PALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred ceEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 4689999999998 7889999999999999999999999999999999999999999999999964 3467889
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCCc---CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQE---VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~---~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1064)
|||+|++.+++ .|+.|||..+...... ......+++.++.++.|++=-.+++. .+||-||||||.|-+
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V--------~dLsVG~qQRVEIlK 153 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV--------ADLSVGEQQRVEILK 153 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee--------ecCCcchhHHHHHHH
Confidence 99999998865 6999999988754211 11234566777888877763333322 479999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001511 592 LFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1064)
Q Consensus 592 AL~~~P~iliLDEPTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1064)
||+++|++||||||||-|.|...+++++.++ +.|+|||+|||++..+. .||++-||..+.
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gk 217 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGK 217 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCe
Confidence 9999999999999999999999998877665 46999999999999876 699999998763
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=339.45 Aligned_cols=195 Identities=18% Similarity=0.252 Sum_probs=161.4
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i 515 (1064)
..++++|+++ ..+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ...++.+
T Consensus 256 ~~l~~~~~~~-----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 330 (501)
T PRK11288 256 VRLRLDGLKG-----PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI 330 (501)
T ss_pred cEEEEecccc-----CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCC
Confidence 3689999984 248999999999999999999999999999999999999999999999853 1234689
Q ss_pred EEEecCC----CCCcccHHHHhcCCCCCCC---c---CCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHH
Q 001511 516 FYVPQRP----YTAVGTLRDQLIYPLTSDQ---E---VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 516 ~~v~Q~p----~l~~~Ti~eni~~~~~~~~---~---~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
+|+||++ ..+..|+.||+.++..... . .....++++.++++.+++. +..++.| .+||||||
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgGq~ 402 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI--------MNLSGGNQ 402 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc--------ccCCHHHH
Confidence 9999997 3445799999987532110 0 0111234677899999994 5666666 38999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++|||||+.+|++|||||||++||+.+++.+.+.++ +.|.|+|+||||++.+. .||++++++++
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g 472 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREG 472 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999999988764 45899999999999874 79999999865
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=336.65 Aligned_cols=200 Identities=23% Similarity=0.264 Sum_probs=162.8
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-CccEEEeCCCCc-------cccc
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIAKPGVGS-------DLNK 513 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~i~g~~~-------~lr~ 513 (1064)
.+.++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|.++|.+. ..++
T Consensus 258 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 258 EPRIVLNNGVVSYN-DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred CceEEEeceEEEEC-CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 35799999999995 45799999999999999999999999999999999999876 799999998531 2356
Q ss_pred cEEEEecCCCCC---cccHHHHhcCCCCC----CCcCCCCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChHHHH
Q 001511 514 EIFYVPQRPYTA---VGTLRDQLIYPLTS----DQEVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 514 ~i~~v~Q~p~l~---~~Ti~eni~~~~~~----~~~~~~~~~~~i~~~l~~~~L~~-~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
+++|++|++.++ ..++.+++.++... ........++++.++++.+++.+ ..++.| .+|||||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgGq~q 408 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPF--------HSLSWGQQR 408 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCch--------hhCCHHHHH
Confidence 899999998643 24677776543211 00001112356788999999986 777766 389999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cC-cEEEEEccChhHHH--hcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MG-TSCITISHRPALVA--FHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g-~TvI~ItH~l~~i~--~~D~Il~l~~~ 650 (1064)
|++|||||+.+|++|||||||++||+.+.+.+.+.+++ .+ .|+|+||||++.+. .+|++++|+++
T Consensus 409 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G 479 (490)
T PRK10938 409 LALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDG 479 (490)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCC
Confidence 99999999999999999999999999999999887765 34 57999999999885 48999999864
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=338.43 Aligned_cols=300 Identities=30% Similarity=0.486 Sum_probs=277.6
Q ss_pred CCchhhhhccccccCCceeecCCCeeehhHHHHHHhhHHHHHHhhcCCceehhHhhcCHHHHHHHHHHHHHHhhhHHHHh
Q 001511 736 RILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIA 815 (1064)
Q Consensus 736 ~~~p~Ra~~lCri~iP~l~s~e~g~lv~c~~~lv~Rt~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~~~~~~~pas~~n 815 (1064)
..+..+...+.+...|.+.+++.+.++...++++++|++++.++.++|.++.+++++|.+.|.+.+..|++++++++++|
T Consensus 73 ~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~ 152 (659)
T TIGR00954 73 GVFLGKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFIN 152 (659)
T ss_pred HHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677788888999988888888899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHH
Q 001511 816 PSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWR 895 (1064)
Q Consensus 816 ~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~~~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~ 895 (1064)
+.++|+++++...||+++++|++++|+++..||++++.|++..|+|||||+||++||+.++++++++++|++|++.++..
T Consensus 153 ~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~ 232 (659)
T TIGR00954 153 SAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFK 232 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCchhHHHHHHHHHHHHHHHhcCCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHH
Q 001511 896 MKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELL 975 (1064)
Q Consensus 896 l~~~~g~~g~~~~~~~~~~~~~~lr~~~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~ 975 (1064)
|....++..++++++++.+++.+.+.++|+++++..++++.||+||..|++.++|+|||++|+|++.|+..+++.++++.
T Consensus 233 L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~ 312 (659)
T TIGR00954 233 LLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLV 312 (659)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHHHHHHHhhhcC-CccccchhHHHHHHHhHH
Q 001511 976 EHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKG-DRALVSTQGEIRMIMNLI 1035 (1064)
Q Consensus 976 ~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 1035 (1064)
++..+..+.+.+++.+++++.+|.+.+++|.++..|++..+| ....++.++-.+.+....
T Consensus 313 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~ 373 (659)
T TIGR00954 313 EHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNG 373 (659)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888886554 223455555444444433
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=308.47 Aligned_cols=189 Identities=23% Similarity=0.293 Sum_probs=155.0
Q ss_pred EeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEE-----------eCCCC-c----cc
Q 001511 448 SGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA-----------KPGVG-S----DL 511 (1064)
Q Consensus 448 ~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~-----------i~g~~-~----~l 511 (1064)
.||+++|++++.+|+|+|+ +++||+++|+||||||||||+|+|+|+++|++|+|. ++|.+ . ..
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 3678888655579999994 999999999999999999999999999999999996 66754 1 11
Q ss_pred c---ccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001511 512 N---KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1064)
Q Consensus 512 r---~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1064)
+ ..+++++|++..+..++.+++.+.... ...++++.++++.+|+.+..++.+ .+||||||||++
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~l~~~gl~~~~~~~~--------~~LS~G~~qrv~ 149 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELLKK-----KDERGKLDELVDQLELRHVLDRNI--------DQLSGGELQRVA 149 (255)
T ss_pred hhcccceeeecchhccCchHHHHHHHHHhch-----hHHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHHHHH
Confidence 1 247899998776555666665543211 123456788999999988777665 389999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 589 IARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||++.+|+++||||||++||+.++..+.+.+++ .++|+|+|||+++.+. .||+|++|+++
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~~ 215 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYGE 215 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECCC
Confidence 99999999999999999999999999988877654 4899999999999887 69999999864
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=343.24 Aligned_cols=206 Identities=21% Similarity=0.241 Sum_probs=163.3
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCC
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~ 523 (1064)
+|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. ..++|++|++.
T Consensus 1 ~i~i~nls~~~g-~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~-----~~i~~~~q~~~ 74 (638)
T PRK10636 1 MIVFSSLQIRRG-VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN-----WQLAWVNQETP 74 (638)
T ss_pred CEEEEEEEEEeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----CEEEEEecCCC
Confidence 378999999994 568999999999999999999999999999999999999999999999884 25899999764
Q ss_pred CCcccHHHHhcCCCC---------------C--------C----CcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCC
Q 001511 524 TAVGTLRDQLIYPLT---------------S--------D----QEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINW 575 (1064)
Q Consensus 524 l~~~Ti~eni~~~~~---------------~--------~----~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~ 575 (1064)
.+..|+.+.+..... . . .......+.++.++++.+|+. +..++.+
T Consensus 75 ~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~------- 147 (638)
T PRK10636 75 ALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPV------- 147 (638)
T ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCch-------
Confidence 443454443321000 0 0 000012345678889999996 4555544
Q ss_pred CCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCCceE
Q 001511 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEGEWR 654 (1064)
Q Consensus 576 g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~ 654 (1064)
.+|||||||||+|||||+.+|++|||||||++||+.+..++.+.+++.+.|+|+||||+..+. .||+|++|+++ ...
T Consensus 148 -~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G-~i~ 225 (638)
T PRK10636 148 -SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQ-SLF 225 (638)
T ss_pred -hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCC-EEE
Confidence 489999999999999999999999999999999999999999999988889999999999875 69999999864 333
Q ss_pred EeecCCCccc
Q 001511 655 VHDKRDGSSV 664 (1064)
Q Consensus 655 ~~~~~~~~~~ 664 (1064)
...+++..+.
T Consensus 226 ~~~g~~~~~~ 235 (638)
T PRK10636 226 EYTGNYSSFE 235 (638)
T ss_pred EecCCHHHHH
Confidence 3444554443
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=339.82 Aligned_cols=206 Identities=23% Similarity=0.268 Sum_probs=170.5
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
...|+++||++.|+ ++++++|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+ |.+ -.|+|++|+
T Consensus 317 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~----~~i~y~~q~ 390 (635)
T PRK11147 317 KIVFEMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK----LEVAYFDQH 390 (635)
T ss_pred CceEEEeeeEEEEC-CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC----cEEEEEeCc
Confidence 34799999999995 467999999999999999999999999999999999999999999998 421 269999998
Q ss_pred CC-C-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 522 PY-T-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 522 p~-l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
+. + +..|+.||+.++..... ......++.++++.+++. +..++.+ .+||||||||++|||||+.+|+
T Consensus 391 ~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgGekqRl~la~al~~~p~ 460 (635)
T PRK11147 391 RAELDPEKTVMDNLAEGKQEVM--VNGRPRHVLGYLQDFLFHPKRAMTPV--------KALSGGERNRLLLARLFLKPSN 460 (635)
T ss_pred ccccCCCCCHHHHHHhhccccc--ccchHHHHHHHHHhcCCCHHHHhChh--------hhCCHHHHHHHHHHHHHhcCCC
Confidence 63 4 34699999987532110 011245677889999985 4556655 3899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCCceEEeecCCCcc
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEGEWRVHDKRDGSS 663 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~~~~~~~~~~ 663 (1064)
+|||||||++||+.+...+.+.+++.+.|+|+||||...+. .||+|++++++|.....+++++.+
T Consensus 461 lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 461 LLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999999999999999999988779999999999875 699999998666565555555433
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=345.38 Aligned_cols=198 Identities=22% Similarity=0.265 Sum_probs=159.3
Q ss_pred eeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC--ccEEEeCCCC--ccccccEEEEecCCCC
Q 001511 449 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV--SGHIAKPGVG--SDLNKEIFYVPQRPYT 524 (1064)
Q Consensus 449 nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~--~G~I~i~g~~--~~lr~~i~~v~Q~p~l 524 (1064)
|+++.|+ ++++|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.+||.+ .+.+++++||+|++.+
T Consensus 73 ~l~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l 151 (659)
T PLN03211 73 DETRQIQ-ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDIL 151 (659)
T ss_pred cccccCC-CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECccccc
Confidence 3333442 467999999999999999999999999999999999999885 9999999975 3445679999999988
Q ss_pred Cc-ccHHHHhcCCCCCC---CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001511 525 AV-GTLRDQLIYPLTSD---QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1064)
Q Consensus 525 ~~-~Ti~eni~~~~~~~---~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1064)
+. .|++||+.+..... ....++..+++.++++.+|+.+..+....+ ....+||||||||++|||+|+++|+++
T Consensus 152 ~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~---~~~~~LSgGerqRv~ia~aL~~~P~iL 228 (659)
T PLN03211 152 YPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN---SFIRGISGGERKRVSIAHEMLINPSLL 228 (659)
T ss_pred CCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCC---CCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence 75 69999998753211 001111234577899999998765443211 123579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhH--HHhcCEEEEEeCC
Q 001511 601 ILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPAL--VAFHDVVLSLDGE 650 (1064)
Q Consensus 601 iLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~--i~~~D~Il~l~~~ 650 (1064)
||||||+|||+.++..+.+.+++ .|+|+|+++|+++. .+.+|+|++|+++
T Consensus 229 lLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G 283 (659)
T PLN03211 229 ILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEG 283 (659)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCC
Confidence 99999999999999999888764 58999999999973 4679999999864
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=297.02 Aligned_cols=174 Identities=26% Similarity=0.369 Sum_probs=154.1
Q ss_pred eceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCC---C--c-----cccccEEEEecCCCCCc-ccHHH
Q 001511 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV---G--S-----DLNKEIFYVPQRPYTAV-GTLRD 531 (1064)
Q Consensus 463 ~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~---~--~-----~lr~~i~~v~Q~p~l~~-~Ti~e 531 (1064)
++||+.+..-++||-|+||||||||+|+|+|+..|++|.|.+||. | + --+++|||||||.-+|. .||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 688888887899999999999999999999999999999999995 2 1 12678999999998875 69999
Q ss_pred HhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 001511 532 QLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTT 611 (1064)
Q Consensus 532 ni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~ 611 (1064)
|+.|+... ...++..++.+.+|++++++++|. .|||||||||||+|||+..|++|++|||.|+||.
T Consensus 96 NL~YG~~~------~~~~~fd~iv~lLGI~hLL~R~P~--------~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 96 NLRYGMWK------SMRAQFDQLVALLGIEHLLDRYPG--------TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred chhhhhcc------cchHhHHHHHHHhCcHHHHhhCCC--------ccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence 99999754 245677888999999999999995 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH----hcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 612 DMEERFCAKVR----AMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 612 ~~~~~l~~~l~----~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
..+.+++-.++ +.+.-|+.|||.+.++ +.||++++|+++
T Consensus 162 ~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~G 205 (352)
T COG4148 162 PRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENG 205 (352)
T ss_pred chhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCC
Confidence 99988776554 3589999999999876 569999999986
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=287.70 Aligned_cols=198 Identities=24% Similarity=0.350 Sum_probs=173.9
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
+|+++||++.| +++.+++|+|++|++|.+++|+||||+|||||+.++++|.++++|+|.++|.+ +++.+++++
T Consensus 1 MI~i~nv~K~y-~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 1 MITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred CeeehhhhHhh-CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 47899999998 46789999999999999999999999999999999999999999999999975 457788999
Q ss_pred EecCCCCC-cccHHHHhcCCCCCC--CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 518 VPQRPYTA-VGTLRDQLIYPLTSD--QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 518 v~Q~p~l~-~~Ti~eni~~~~~~~--~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+-|+..+- ..||+|-+.||.-.. +....++...+.++++-++|.++.+++-. +||||||||.-||..++
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd--------~LSGGQrQRAfIAMVla 151 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLD--------ELSGGQRQRAFIAMVLA 151 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHH--------hcccchhhhhhhheeee
Confidence 99988754 569999999886432 22233556678899999999999999863 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVR----AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~----~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
.+.+.++||||.++||.....++++.++ +.|+|+++|-||.+.+. ++|+|+-|.++
T Consensus 152 QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G 212 (252)
T COG4604 152 QDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNG 212 (252)
T ss_pred ccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCC
Confidence 9999999999999999988888777665 46999999999999986 68999999875
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=330.59 Aligned_cols=255 Identities=23% Similarity=0.294 Sum_probs=200.1
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCC
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~ 523 (1064)
+|+++|+++.| +++++++|+||++.+|+++||||+||||||||+|+|+|...|++|+|..++. -+++|++|++.
T Consensus 3 ~i~~~~ls~~~-g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----~~v~~l~Q~~~ 76 (530)
T COG0488 3 MITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----LRVGYLSQEPP 76 (530)
T ss_pred eEEEeeeEEee-CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----ceEEEeCCCCC
Confidence 68999999999 6789999999999999999999999999999999999999999999998762 36999999998
Q ss_pred CCc-ccHHHHhcCCCCCCCcC------------------------------CCCCHHHHHHHHHhcCChhHHhcCCCCcc
Q 001511 524 TAV-GTLRDQLIYPLTSDQEV------------------------------EPLTHGGMVELLKNVDLEYLLDRYPPEKE 572 (1064)
Q Consensus 524 l~~-~Ti~eni~~~~~~~~~~------------------------------~~~~~~~i~~~l~~~~L~~~~~~~p~~~~ 572 (1064)
... .|+.+.+..+....... ....+.++..++..+|+.+. ++
T Consensus 77 ~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~------ 149 (530)
T COG0488 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DR------ 149 (530)
T ss_pred cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cC------
Confidence 875 49999887653210000 00112344445555555443 22
Q ss_pred cCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001511 573 INWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1064)
Q Consensus 573 ~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1064)
...+||||||.|++|||||+.+||+|+|||||++||.++..++.+.|++...|+|+||||..++. .|++|+.++.+
T Consensus 150 --~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g- 226 (530)
T COG0488 150 --PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRG- 226 (530)
T ss_pred --chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCC-
Confidence 12589999999999999999999999999999999999999999999876339999999999886 69999999976
Q ss_pred ceEEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHh
Q 001511 652 EWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIA 714 (1064)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~ 714 (1064)
....+.++++.+...+....+....+..++...+...+.|..+....+.+..++.+..+++.+
T Consensus 227 ~l~~y~Gny~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k 289 (530)
T COG0488 227 KLTPYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEK 289 (530)
T ss_pred ceeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 456677888888887766665555555555556777777777766666554456777666665
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=332.31 Aligned_cols=187 Identities=23% Similarity=0.319 Sum_probs=162.4
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
...++++|+++.|.+ ..|+++||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++ ..++|+||+
T Consensus 338 ~~~l~~~~ls~~~~~--~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------~~i~y~~Q~ 408 (590)
T PRK13409 338 ETLVEYPDLTKKLGD--FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------LKISYKPQY 408 (590)
T ss_pred ceEEEEcceEEEECC--EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------eeEEEeccc
Confidence 347999999999853 35999999999999999999999999999999999999999999885 269999999
Q ss_pred CCC-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001511 522 PYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1064)
Q Consensus 522 p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1064)
+.+ +..|++||+.++.... .....+.++++.+++.+..++.|. +|||||||||+|||||+.+|+++
T Consensus 409 ~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~--------~LSGGe~QRvaiAraL~~~p~ll 475 (590)
T PRK13409 409 IKPDYDGTVEDLLRSITDDL-----GSSYYKSEIIKPLQLERLLDKNVK--------DLSGGELQRVAIAACLSRDADLY 475 (590)
T ss_pred ccCCCCCcHHHHHHHHhhhc-----ChHHHHHHHHHHCCCHHHHhCCcc--------cCCHHHHHHHHHHHHHhcCCCEE
Confidence 864 4579999998752211 123356789999999988888774 89999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 601 ILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 601 iLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||||||++||+.++..+.+.+++ .|.|+|+||||+..+. .||++++++++
T Consensus 476 LLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~~ 530 (590)
T PRK13409 476 LLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEGE 530 (590)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999888764 3899999999999875 69999999863
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=331.13 Aligned_cols=197 Identities=15% Similarity=0.168 Sum_probs=158.1
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c------cccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~lr~~i 515 (1064)
..|+++|+++.+ +++|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ . ..++.+
T Consensus 249 ~~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 249 VILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred cEEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 479999999863 469999999999999999999999999999999999999999999999854 1 124569
Q ss_pred EEEecCCC---CC-cccHHHHhcCC-----CCCCCc-CCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHH
Q 001511 516 FYVPQRPY---TA-VGTLRDQLIYP-----LTSDQE-VEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 516 ~~v~Q~p~---l~-~~Ti~eni~~~-----~~~~~~-~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
+|+||++. ++ ..|+.+|+.+. ...... .....++++.++++.+++. +..++.| .+||||||
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgGq~ 397 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI--------GSLSGGNQ 397 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc--------ccCCcHHH
Confidence 99999963 33 35777664321 110010 0111234567788888885 4455555 48999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
||++||||++.+|++|||||||++||+.+.+.+++.++ +.|.|+|++|||++.+. .||++++|+++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g 467 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNG 467 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999999988774 45999999999999875 79999999864
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=332.24 Aligned_cols=194 Identities=20% Similarity=0.246 Sum_probs=159.1
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-c------cccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-S------DLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~------~lr~~i 515 (1064)
..++++|++. .+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.+ . ..++.|
T Consensus 267 ~~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 267 PVLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred ceEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 4799999983 26999999999999999999999999999999999999999999999853 1 124579
Q ss_pred EEEecCCC---CC-cccHHHHhcCCCC---CCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHH
Q 001511 516 FYVPQRPY---TA-VGTLRDQLIYPLT---SDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRL 587 (1064)
Q Consensus 516 ~~v~Q~p~---l~-~~Ti~eni~~~~~---~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRl 587 (1064)
+|+||++. ++ ..|+.+|+..... .........++++.++++.+++. +..++.+ .+||||||||+
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~kqrl 412 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA--------RTLSGGNQQKV 412 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc--------ccCCcHHHHHH
Confidence 99999862 44 4599999853210 00000111234577889999996 5666665 48999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 588 aIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+|||||+.+|++|||||||++||+.+.+.+.+.+++ .|.|+|+||||++.+. .||++++|+++
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G 479 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQG 479 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999888764 4899999999999885 69999999864
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=355.06 Aligned_cols=207 Identities=23% Similarity=0.334 Sum_probs=171.4
Q ss_pred cEEEEeeEEEcC---CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC---CCccEEEeCCCC--ccccccE
Q 001511 444 YIEFSGVKVVTP---TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP---LVSGHIAKPGVG--SDLNKEI 515 (1064)
Q Consensus 444 ~i~~~nvs~~y~---~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~---p~~G~I~i~g~~--~~lr~~i 515 (1064)
.++++||++.|+ +++++|+|||+++++||+++|+||||||||||+++|+|+.+ |++|+|.+||.+ .++|+.+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 589999999885 24679999999999999999999999999999999999998 789999999975 3567889
Q ss_pred EEEecCCC-CCcccHHHHhcCCCCCCC---cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001511 516 FYVPQRPY-TAVGTLRDQLIYPLTSDQ---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1064)
Q Consensus 516 ~~v~Q~p~-l~~~Ti~eni~~~~~~~~---~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1064)
+||+|++. ++..|++||+.+....+. ..+.+.++++.++++.+++.+..++.+. +.+.+||||||||++|||
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~----~~~~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVG----VPGEGLNVEQRKRLTIGV 914 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeC----CCCCCCCHHHhhHHHHHH
Confidence 99999875 556799999997532211 1111223567889999999887666542 123479999999999999
Q ss_pred HHccCCC-EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH--HhcCEEEEEeCCCceE
Q 001511 592 LFYHKPK-FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV--AFHDVVLSLDGEGEWR 654 (1064)
Q Consensus 592 AL~~~P~-iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i--~~~D~Il~l~~~g~~~ 654 (1064)
||+.+|+ +|+|||||||||+.+...+.+.+++ .|+|+|+++|+++.. ..+|++++|+++|...
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv 983 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV 983 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEE
Confidence 9999997 9999999999999999999888765 489999999999863 6799999999765433
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=333.87 Aligned_cols=189 Identities=21% Similarity=0.318 Sum_probs=161.3
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
...|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. .++||++|+
T Consensus 310 ~~~l~~~~l~~~y~-~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----~~igy~~Q~ 383 (638)
T PRK10636 310 NPLLKMEKVSAGYG-DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----IKLGYFAQH 383 (638)
T ss_pred CceEEEEeeEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----EEEEEecCc
Confidence 34799999999995 467999999999999999999999999999999999999999999998641 369999998
Q ss_pred C--CCC-cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh-hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 522 P--YTA-VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 522 p--~l~-~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
+ .+. ..|+.+++.... .....+++.++++.+++. +..++.+ .+|||||||||+|||+|+.+|
T Consensus 384 ~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~L~~~~l~~~~~~~~~--------~~LSgGekqRl~La~~l~~~p 449 (638)
T PRK10636 384 QLEFLRADESPLQHLARLA------PQELEQKLRDYLGGFGFQGDKVTEET--------RRFSGGEKARLVLALIVWQRP 449 (638)
T ss_pred chhhCCccchHHHHHHHhC------chhhHHHHHHHHHHcCCChhHhcCch--------hhCCHHHHHHHHHHHHHhcCC
Confidence 5 232 347888764211 112356788899999996 4566655 489999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++|||||||++||+.+...+.+.+++.+.|+|+||||+..+. .||+|++|+++
T Consensus 450 ~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G 503 (638)
T PRK10636 450 NLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDG 503 (638)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999887779999999999885 69999999864
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=336.14 Aligned_cols=192 Identities=20% Similarity=0.297 Sum_probs=159.5
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCC
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP 522 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p 522 (1064)
+.++++||++.|++++++|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.+++ +.+|+|++|++
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----~~~igyv~Q~~ 581 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----KVRMAVFSQHH 581 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----ceeEEEEeccc
Confidence 5799999999996556799999999999999999999999999999999999999999999876 34799999987
Q ss_pred CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEE
Q 001511 523 YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601 (1064)
Q Consensus 523 ~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~-~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ili 601 (1064)
. ...++.+|........ .....++++.++++.+++.+ ..++.| .+||||||||++|||||+.+|++||
T Consensus 582 ~-~~l~~~~~~~~~~~~~--~~~~~~~~i~~~L~~~gl~~~~~~~~~--------~~LSgGqkqRvaLAraL~~~p~lLL 650 (718)
T PLN03073 582 V-DGLDLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLALQPM--------YTLSGGQKSRVAFAKITFKKPHILL 650 (718)
T ss_pred c-ccCCcchhHHHHHHHh--cCCCCHHHHHHHHHHCCCChHHhcCCc--------cccCHHHHHHHHHHHHHhcCCCEEE
Confidence 3 2224444432110000 00124567889999999974 556655 4899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 602 LDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 602 LDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|||||++||+.+...+.+.+.+.+.|+|+||||+..+. .||++++|+++
T Consensus 651 LDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G 700 (718)
T PLN03073 651 LDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEG 700 (718)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 99999999999999999988875569999999999886 69999999864
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=268.32 Aligned_cols=195 Identities=21% Similarity=0.328 Sum_probs=166.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC---ccEEEeCCCC----ccccccEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVG----SDLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~---~G~I~i~g~~----~~lr~~i~ 516 (1064)
++.++||+..-+ +...|-|+||+|.+||++.|+||||||||||+..+.|.+.++ +|++.+++++ ..-++++|
T Consensus 2 ~l~l~nvsl~l~-g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G 80 (213)
T COG4136 2 MLCLKNVSLRLP-GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG 80 (213)
T ss_pred ceeeeeeeecCC-CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee
Confidence 578899998764 567999999999999999999999999999999999999874 8999999975 23468999
Q ss_pred EEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc
Q 001511 517 YVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595 (1064)
Q Consensus 517 ~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~ 595 (1064)
++|||+++|. .+|.+|+.|..+..-.. ......+..+|++.|+..+.++.|. +||||||-||++-|+|+.
T Consensus 81 iLFQD~lLFphlsVg~Nl~fAlp~~~KG-~aRr~~a~aAL~~~gL~g~f~~dP~--------tlSGGQrARvaL~R~Lla 151 (213)
T COG4136 81 ILFQDALLFPHLSVGQNLLFALPATLKG-NARRNAANAALERSGLDGAFHQDPA--------TLSGGQRARVALLRALLA 151 (213)
T ss_pred eeecccccccccccccceEEecCccccc-HHHHhhHHHHHHHhccchhhhcChh--------hcCcchHHHHHHHHHHHh
Confidence 9999999986 59999999976643211 1344557789999999999999884 899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHH----HHHHhcCcEEEEEccChhHHHhcCEEEEEe
Q 001511 596 KPKFAILDECTSAVTTDMEERFC----AKVRAMGTSCITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 596 ~P~iliLDEPTSaLD~~~~~~l~----~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1064)
.|+.++||||+|.||...+.+.. ..+++.|.-+|+||||...+..-.+++.+.
T Consensus 152 ~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~~ 208 (213)
T COG4136 152 QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEMA 208 (213)
T ss_pred CcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeeee
Confidence 99999999999999987766644 455677999999999999888777777664
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=314.16 Aligned_cols=167 Identities=27% Similarity=0.386 Sum_probs=141.7
Q ss_pred EEcCCCCchhHHHHHhcccCCCCccEEEeCCCC----ccccccEEEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHH
Q 001511 476 ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGG 550 (1064)
Q Consensus 476 IvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~----~~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~ 550 (1064)
|+||||||||||+|+|+|+++|++|+|.++|.+ ...+++++|+||++.++. .|++||+.++............++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 689999999999999999999999999999964 123568999999998775 599999998743221111122456
Q ss_pred HHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCc
Q 001511 551 MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGT 626 (1064)
Q Consensus 551 i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~ 626 (1064)
+.++++.+++.++.++.|. +||||||||++|||||+.+|+++||||||++||+.+++.+.+.+++ .|+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~--------~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~ 152 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPH--------QLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI 152 (325)
T ss_pred HHHHHHHcCCcchhcCChh--------hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCC
Confidence 7889999999998888874 8999999999999999999999999999999999999998887654 389
Q ss_pred EEEEEccChhHHH-hcCEEEEEeCC
Q 001511 627 SCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 627 TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|+|+|||+++.+. .||+|++|+++
T Consensus 153 tiiivTHd~~e~~~~~d~i~vl~~G 177 (325)
T TIGR01187 153 TFVFVTHDQEEAMTMSDRIAIMRKG 177 (325)
T ss_pred EEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999865 69999999864
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-32 Score=289.82 Aligned_cols=201 Identities=26% Similarity=0.386 Sum_probs=167.2
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------cccccc
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKE 514 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~ 514 (1064)
...|+++||++.| +++++|+|+|++|++||..+|+||||||||||+++++|.++|++|.+.+.|.. .++|++
T Consensus 29 ~~li~l~~v~v~r-~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 29 EPLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred cceEEecceEEEE-CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 4579999999998 57899999999999999999999999999999999999999999999988853 468999
Q ss_pred EEEEecC---CCCCcccHHHHhcCCCCCC-C----cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHH
Q 001511 515 IFYVPQR---PYTAVGTLRDQLIYPLTSD-Q----EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586 (1064)
Q Consensus 515 i~~v~Q~---p~l~~~Ti~eni~~~~~~~-~----~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQR 586 (1064)
||+|.-. -+....+++|-+.-+.... + ...+...+++..+++.+|+.+..++.- .+||-|||||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~--------~~LS~Ge~rr 179 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPF--------GSLSQGEQRR 179 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCch--------hhcCHhHHHH
Confidence 9999743 2344568888776432211 1 112234456778999999999887743 4899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-----CcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001511 587 LGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM-----GTSCITISHRPALVA-FHDVVLSLDGEG 651 (1064)
Q Consensus 587 laIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~-----g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1064)
+-|||||+++|++|||||||+|||...++.+.+.+.+. +.++|+|||..+.+. +.++++.++++.
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~ 250 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGE 250 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCc
Confidence 99999999999999999999999999999988877652 678999999999875 679999998653
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.4e-32 Score=280.03 Aligned_cols=142 Identities=23% Similarity=0.314 Sum_probs=127.1
Q ss_pred EeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcc
Q 001511 448 SGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVG 527 (1064)
Q Consensus 448 ~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~ 527 (1064)
.||++.|. ++++++|+ |++++||+++|+||||||||||+|+|+|+++|++|+|.++|. .++|++|++.
T Consensus 4 ~~l~~~~~-~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------~i~~~~q~~~---- 71 (177)
T cd03222 4 PDCVKRYG-VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------TPVYKPQYID---- 71 (177)
T ss_pred CCeEEEEC-CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------EEEEEcccCC----
Confidence 57888884 46788884 999999999999999999999999999999999999999984 4889888642
Q ss_pred cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001511 528 TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607 (1064)
Q Consensus 528 Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTS 607 (1064)
||||||||++||||++.+|+++||||||+
T Consensus 72 ---------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 72 ---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred ---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 89999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHh---c-CcEEEEEccChhHHH-hcCEEEEEeCCCc
Q 001511 608 AVTTDMEERFCAKVRA---M-GTSCITISHRPALVA-FHDVVLSLDGEGE 652 (1064)
Q Consensus 608 aLD~~~~~~l~~~l~~---~-g~TvI~ItH~l~~i~-~~D~Il~l~~~g~ 652 (1064)
+||+.+++.+.+.+++ . +.|+|++||+++.+. .+|++++++++.+
T Consensus 101 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 101 YLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPG 150 (177)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCc
Confidence 9999999998887754 3 489999999999887 6999999987643
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=329.80 Aligned_cols=203 Identities=22% Similarity=0.264 Sum_probs=159.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCC
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~ 523 (1064)
+|+++||++.|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|. ..+++++|++.
T Consensus 3 ~l~i~~ls~~~~-~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-----~~~~~l~q~~~ 76 (635)
T PRK11147 3 LISIHGAWLSFS-DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-----LIVARLQQDPP 76 (635)
T ss_pred EEEEeeEEEEeC-CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-----CEEEEeccCCC
Confidence 589999999995 468999999999999999999999999999999999999999999999873 24788998764
Q ss_pred C-CcccHHHHhcCCCC-------------------C-C--------------CcCCCCCHHHHHHHHHhcCChhHHhcCC
Q 001511 524 T-AVGTLRDQLIYPLT-------------------S-D--------------QEVEPLTHGGMVELLKNVDLEYLLDRYP 568 (1064)
Q Consensus 524 l-~~~Ti~eni~~~~~-------------------~-~--------------~~~~~~~~~~i~~~l~~~~L~~~~~~~p 568 (1064)
. ..+++.+++..+.. . . .......+.++.++++.+|+.. ++.+
T Consensus 77 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--~~~~ 154 (635)
T PRK11147 77 RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP--DAAL 154 (635)
T ss_pred CCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC--CCch
Confidence 3 23455554321100 0 0 0000112456777888888752 3333
Q ss_pred CCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEE
Q 001511 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSL 647 (1064)
Q Consensus 569 ~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l 647 (1064)
.+|||||||||+|||||+.+|++|||||||++||+.+..++.+.+++.+.|+|+||||...+. .||+|++|
T Consensus 155 --------~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L 226 (635)
T PRK11147 155 --------SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDL 226 (635)
T ss_pred --------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 489999999999999999999999999999999999999999999988789999999999875 69999999
Q ss_pred eCCCceEEeecCCCcc
Q 001511 648 DGEGEWRVHDKRDGSS 663 (1064)
Q Consensus 648 ~~~g~~~~~~~~~~~~ 663 (1064)
+++ ......+++..+
T Consensus 227 ~~G-~i~~~~g~~~~~ 241 (635)
T PRK11147 227 DRG-KLVSYPGNYDQY 241 (635)
T ss_pred ECC-EEEEecCCHHHH
Confidence 864 333334444433
|
|
| >PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=282.24 Aligned_cols=275 Identities=28% Similarity=0.484 Sum_probs=248.7
Q ss_pred hHHHHHHHHHHhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 85 LKSLQVLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTS 164 (1064)
Q Consensus 85 ~~~l~rL~~~~~p~~~~~~~~~ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ 164 (1064)
++.+++|++.+.|..+...++.+++++++.++++.++++++.+.+.++++++.++.+.|++.++.+++++++.++++...
T Consensus 7 lr~f~~L~~~~~~~~~~~~~~ll~~ll~l~l~~~~lsv~~~~~~g~~~~aL~~~d~~~f~~~l~~~~~l~~~~~~l~~~~ 86 (281)
T PF06472_consen 7 LRRFWRLARIYWPSERWKAWLLLLVLLLLLLARVYLSVRINFWNGDFYNALQQKDLQAFWRLLLLFLLLAIASALLNSIL 86 (281)
T ss_pred HHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777788788888899999999999999999999999999999999999888888888888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 165 KYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS 244 (1064)
Q Consensus 165 ~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~ 244 (1064)
+|+...+..+||+|+|++++++|+++..+|.+...+++++||||||++||+.+++...+++.+++.++++.+.|+++++.
T Consensus 87 ~yl~~~L~l~wR~~Lt~~~~~~yl~~~~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~ 166 (281)
T PF06472_consen 87 KYLRQRLALRWREWLTRHLHDRYLSNRTYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWS 166 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999888877
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Q 001511 245 YASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHM 324 (1064)
Q Consensus 245 ~~~~~L~li~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~ 324 (1064)
...+...+++++++++..+++++++|++.+++.++|+.||++|..+.++++|+|+|++|+||+.|..+++++|+++.++.
T Consensus 167 ~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~ 246 (281)
T PF06472_consen 167 ISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNW 246 (281)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 65555556778888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001511 325 RVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFF 359 (1064)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 359 (1064)
++.++.....++++.++..+++..++.+++.+|+|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~F 281 (281)
T PF06472_consen 247 RRLIRRRLRLGFFTNFYVKYLSSILPYLVVAPPYF 281 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 99888888899988887567777777777766653
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-32 Score=287.96 Aligned_cols=172 Identities=17% Similarity=0.119 Sum_probs=138.7
Q ss_pred eeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEE-eCCCCccccccEEEEecCCCCCc-ccHHHHhcCCC
Q 001511 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA-KPGVGSDLNKEIFYVPQRPYTAV-GTLRDQLIYPL 537 (1064)
Q Consensus 460 ~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~-i~g~~~~lr~~i~~v~Q~p~l~~-~Ti~eni~~~~ 537 (1064)
+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|. ++|.. + .+.|++.++. .|++||+.++.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~------~-~~~~~~~l~~~ltv~enl~~~~ 74 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDA------L-PLGANSFILPGLTGEENARMMA 74 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCce------e-ccccccccCCcCcHHHHHHHHH
Confidence 79999999999999999999999999999999999999999997 77632 1 2345666665 59999998753
Q ss_pred CCCCcCCCCCHHHHH-HHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 001511 538 TSDQEVEPLTHGGMV-ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616 (1064)
Q Consensus 538 ~~~~~~~~~~~~~i~-~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~ 616 (1064)
.... ...++.. .+.+..++.+..++.+ .+||||||||++||||++.+|+++||||||+++|+.++..
T Consensus 75 ~~~~----~~~~~~~~~~~~~~~l~~~~~~~~--------~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~ 142 (213)
T PRK15177 75 SLYG----LDGDEFSHFCYQLTQLEQCYTDRV--------SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLR 142 (213)
T ss_pred HHcC----CCHHHHHHHHHHHhChhHHhhchH--------hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHH
Confidence 3211 1122222 3345567766666554 3799999999999999999999999999999999999999
Q ss_pred HHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 617 FCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 617 l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+.+.+.+ .+.|+|++||+++.+. .||++++|+++
T Consensus 143 ~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G 179 (213)
T PRK15177 143 MQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHG 179 (213)
T ss_pred HHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECC
Confidence 8886643 3678999999999885 79999999864
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-32 Score=330.01 Aligned_cols=192 Identities=22% Similarity=0.301 Sum_probs=159.0
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC---ccEEEeCCCC---ccccccEEEEecCCCCC-cccH
Q 001511 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVG---SDLNKEIFYVPQRPYTA-VGTL 529 (1064)
Q Consensus 457 ~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~---~G~I~i~g~~---~~lr~~i~~v~Q~p~l~-~~Ti 529 (1064)
++++|+|+|+++++||.++|+||||||||||+++|+|..+|. +|+|.+||.+ ..+++.++||+|++.++ ..||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999999885 8999999975 34678899999999877 4699
Q ss_pred HHHhcCCCCCCCc---CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCC
Q 001511 530 RDQLIYPLTSDQE---VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606 (1064)
Q Consensus 530 ~eni~~~~~~~~~---~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPT 606 (1064)
+|||.++...+.. .....++++.++++.+|+.+..+....+. ..+..||||||||++|||+|+.+|++++|||||
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~--~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVP--GRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCC--CCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 9999886432211 11123456888999999987655543210 013579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHh---cCcEEEEEccChh--HHHhcCEEEEEeCC
Q 001511 607 SAVTTDMEERFCAKVRA---MGTSCITISHRPA--LVAFHDVVLSLDGE 650 (1064)
Q Consensus 607 SaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~--~i~~~D~Il~l~~~ 650 (1064)
||||+.+...+.+.+++ .|+|+|+++|+++ ....+|++++|+++
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G 243 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEG 243 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCC
Confidence 99999999999887765 4899999999986 35789999999854
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=274.75 Aligned_cols=150 Identities=23% Similarity=0.350 Sum_probs=127.7
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCcc-ccccEEEEecCCCCCcccHHHHhcCC
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD-LNKEIFYVPQRPYTAVGTLRDQLIYP 536 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~-lr~~i~~v~Q~p~l~~~Ti~eni~~~ 536 (1064)
+++|+|+||++++|++++|+||||||||||+|+++ +++|++.++|.... .+..++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q---------------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ---------------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH----------------
Confidence 57999999999999999999999999999999985 37899999875322 2335777776
Q ss_pred CCCCCcCCCCCHHHHHHHHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHH
Q 001511 537 LTSDQEVEPLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGMARLFYHK--PKFAILDECTSAVTTDM 613 (1064)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~L~~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~--P~iliLDEPTSaLD~~~ 613 (1064)
.++++.+++.+. .++.+ .+||||||||++||||++.+ |+++||||||++||+.+
T Consensus 68 ---------------~~~l~~~~L~~~~~~~~~--------~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~ 124 (176)
T cd03238 68 ---------------LQFLIDVGLGYLTLGQKL--------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124 (176)
T ss_pred ---------------HHHHHHcCCCccccCCCc--------CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence 246777787643 44433 48999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 614 EERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 614 ~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
.+.+.+.+++ .|+|+|+|||+++.+..+|++++|+++
T Consensus 125 ~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g 164 (176)
T cd03238 125 INQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPG 164 (176)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCC
Confidence 9998887765 589999999999999899999999764
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=321.45 Aligned_cols=184 Identities=25% Similarity=0.292 Sum_probs=154.3
Q ss_pred eeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEE-----------eCCCC-c----c--
Q 001511 449 GVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA-----------KPGVG-S----D-- 510 (1064)
Q Consensus 449 nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~-----------i~g~~-~----~-- 510 (1064)
+++++|..+..+|++++ ++++||+++|+||||||||||+|+|+|+++|++|+|. ++|.+ . .
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 37778864457999999 9999999999999999999999999999999999997 78864 1 1
Q ss_pred -ccccEEEEe----cCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHH
Q 001511 511 -LNKEIFYVP----QRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 511 -lr~~i~~v~----Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
.+.++++.+ |.|.++.+|++|++... ...+++.++++.+++.+..++.+ .+|||||||
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~--------~~LSgGe~q 219 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDI--------SELSGGELQ 219 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCCh--------hhCCHHHHH
Confidence 122345444 45556677999998642 13457888999999988777766 389999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|++|||||+.+|+++||||||++||+.....+.+.+++. |.|+|+||||++.+. .+|++++++++
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999988877654 999999999999875 58999999864
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-31 Score=342.91 Aligned_cols=207 Identities=23% Similarity=0.276 Sum_probs=167.8
Q ss_pred cEEEEeeEEEcC------------CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC--CccEEEeCCCC-
Q 001511 444 YIEFSGVKVVTP------------TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL--VSGHIAKPGVG- 508 (1064)
Q Consensus 444 ~i~~~nvs~~y~------------~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p--~~G~I~i~g~~- 508 (1064)
.+.++||++..+ +++.+|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 589999998753 124799999999999999999999999999999999999874 78999999965
Q ss_pred --ccccccEEEEecCCCCC-cccHHHHhcCCCCCCC---cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChH
Q 001511 509 --SDLNKEIFYVPQRPYTA-VGTLRDQLIYPLTSDQ---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLG 582 (1064)
Q Consensus 509 --~~lr~~i~~v~Q~p~l~-~~Ti~eni~~~~~~~~---~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGG 582 (1064)
...++.+|||+|++.++ ..|++||+.++...+. .......+.+.++++.++|.+..++.+.+. ....||||
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~---~~~~LSgG 1023 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLP---GVTGLSTE 1023 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCC---CCCCcCHH
Confidence 23567899999998654 5699999987532110 011112345788999999988776654211 12479999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhH--HHhcCEEEEEeCCCce
Q 001511 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPAL--VAFHDVVLSLDGEGEW 653 (1064)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~--i~~~D~Il~l~~~g~~ 653 (1064)
||||++|||+|+.+|++|+|||||||||+.+...+++.+++ .|+|+|+++|+++. ...+|++++|+++|..
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 99999999999999999999999999999999999888765 48999999999984 4679999999875543
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=270.96 Aligned_cols=275 Identities=19% Similarity=0.286 Sum_probs=207.4
Q ss_pred cEEEEeeEEEcC--CC-CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC----CCccEEEeCCCC------cc
Q 001511 444 YIEFSGVKVVTP--TG-NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP----LVSGHIAKPGVG------SD 510 (1064)
Q Consensus 444 ~i~~~nvs~~y~--~~-~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~----p~~G~I~i~g~~------~~ 510 (1064)
.+.++|++..+. .+ ..+++++|+++.+||+-|+||+||||||-+.|+|+|..+ .+.-+..+++.+ .+
T Consensus 3 LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred cccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHH
Confidence 355667776543 23 479999999999999999999999999999999999854 345556666654 11
Q ss_pred ----ccccEEEEecCCCC---CcccHHHHhcCCCCCCC----cCC--CCCHHHHHHHHHhcCCh---hHHhcCCCCcccC
Q 001511 511 ----LNKEIFYVPQRPYT---AVGTLRDQLIYPLTSDQ----EVE--PLTHGGMVELLKNVDLE---YLLDRYPPEKEIN 574 (1064)
Q Consensus 511 ----lr~~i~~v~Q~p~l---~~~Ti~eni~~~~~~~~----~~~--~~~~~~i~~~l~~~~L~---~~~~~~p~~~~~~ 574 (1064)
+.+.|+++||+|.. ++.+|..++.-..+... ... .....++.++|.++|+. |....||.
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~----- 157 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPY----- 157 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcc-----
Confidence 23679999999974 34577776654322110 001 13567889999999996 45677885
Q ss_pred CCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001511 575 WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDG 649 (1064)
Q Consensus 575 ~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1064)
+|--||-|+|.||.|++.+|++||.||||+++|+.++.++++++.+ .|.|+++++||+..+. -||+
T Consensus 158 ---ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~------ 228 (330)
T COG4170 158 ---ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADK------ 228 (330)
T ss_pred ---hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhh------
Confidence 8999999999999999999999999999999999999999998864 3899999999999885 3544
Q ss_pred CCceEEeecCCCcccccccccccccccchhhhHHHHhhhhHhhhccccccccCCCCCchHHHHHhcCCCCCCC----CCC
Q 001511 650 EGEWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHN----VPL 725 (1064)
Q Consensus 650 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~~~p~~~~~----~~~ 725 (1064)
+. |||.|+-+|++++++.... |.||||++|+.++|+.... .++
T Consensus 229 -------------------------------i~-VlYCGQ~~ESa~~e~l~~~-PhHPYTqALi~a~PDF~~~lp~KsrL 275 (330)
T COG4170 229 -------------------------------IN-VLYCGQTVESAPSEELVTM-PHHPYTQALIRAIPDFGSALPHKSRL 275 (330)
T ss_pred -------------------------------eE-EEEecccccccchhHHhcC-CCCchHHHHHHhCccccccCcchhhh
Confidence 33 7778888888988888875 8999999999999985432 456
Q ss_pred CCCCCCCCCCCCchh---------hhhccccccCCceeecCCCeeehhHHH
Q 001511 726 PVFPQLKSAPRILPL---------RVADMFKVLVPTVFDKQGAQLLAVAFL 767 (1064)
Q Consensus 726 ~~~~~~~~~~~~~p~---------Ra~~lCri~iP~l~s~e~g~lv~c~~~ 767 (1064)
..+||..|.....|. .+.+.| ++.|... .-..|...|-+=
T Consensus 276 ~tL~G~iP~Le~lPiGCRLGPRCP~AQk~C-ie~P~~~-~~K~H~FsCH~P 324 (330)
T COG4170 276 NTLPGAIPLLEQLPIGCRLGPRCPYAQREC-IETPRLT-GAKNHLFACHFP 324 (330)
T ss_pred ccCCCcCchhhhCCcccccCCCCchhhhhh-hcchhhh-hhhcceeeeccc
Confidence 678998887777662 466666 3345542 223455666443
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=263.19 Aligned_cols=144 Identities=34% Similarity=0.567 Sum_probs=128.9
Q ss_pred EEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEec
Q 001511 447 FSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQ 520 (1064)
Q Consensus 447 ~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q 520 (1064)
++|+++.|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ .+.++.++|+||
T Consensus 2 ~~~~~~~~~~-~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 80 (157)
T cd00267 2 IENLSFRYGG-RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80 (157)
T ss_pred eEEEEEEeCC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence 6789998864 479999999999999999999999999999999999999999999999853 123456777777
Q ss_pred CCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001511 521 RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1064)
Q Consensus 521 ~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1064)
|||||+||++||||++.+|+++
T Consensus 81 ----------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 81 ----------------------------------------------------------LSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred ----------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 8999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh-cCEEEEEeC
Q 001511 601 ILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSLDG 649 (1064)
Q Consensus 601 iLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~-~D~Il~l~~ 649 (1064)
+|||||++||..++..+.+.+++ .++|+|++||+++.+.. +|+++++++
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~ 155 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKD 155 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999998887764 36899999999999876 699999976
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-30 Score=266.01 Aligned_cols=200 Identities=28% Similarity=0.371 Sum_probs=166.4
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhccc--CCCCccEEEeCCCC-------cccccc
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVG-------SDLNKE 514 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl--~~p~~G~I~i~g~~-------~~lr~~ 514 (1064)
.++++||++.-.+.+.+|++|||+|++||+.+|+||||||||||.++|+|. |.+++|+|.++|.| +.-|..
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~G 82 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAG 82 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcC
Confidence 589999998764335899999999999999999999999999999999997 58899999999986 234678
Q ss_pred EEEEecCCCCCcc-cHHHHhcCCCCCCCcC---CCCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChHHHHHHHH
Q 001511 515 IFYVPQRPYTAVG-TLRDQLIYPLTSDQEV---EPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQRLGM 589 (1064)
Q Consensus 515 i~~v~Q~p~l~~~-Ti~eni~~~~~~~~~~---~~~~~~~i~~~l~~~~L~~-~~~~~p~~~~~~~g~~LSGGqrQRlaI 589 (1064)
|.+-+|.|.=+.| |+.+-+..+....... .....+++.+.++.+++++ +++|... ..+|||||+|..|
T Consensus 83 ifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN-------~GFSGGEkKR~Ei 155 (251)
T COG0396 83 IFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN-------EGFSGGEKKRNEI 155 (251)
T ss_pred CEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC-------CCcCcchHHHHHH
Confidence 9999999986655 8888776543221111 1133567888999999975 7777653 4799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHH---HHhcCcEEEEEccChhHHHhc--CEEEEEeCC
Q 001511 590 ARLFYHKPKFAILDECTSAVTTDMEERFCAK---VRAMGTSCITISHRPALVAFH--DVVLSLDGE 650 (1064)
Q Consensus 590 ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~---l~~~g~TvI~ItH~l~~i~~~--D~Il~l~~~ 650 (1064)
+.+++.+|++.|||||-||||.+.-+.+.+. +++.|.++++|||.-..+.+. |++.+|-++
T Consensus 156 lQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~G 221 (251)
T COG0396 156 LQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDG 221 (251)
T ss_pred HHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECC
Confidence 9999999999999999999999988877654 455699999999999998876 999999764
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=320.12 Aligned_cols=199 Identities=17% Similarity=0.192 Sum_probs=148.9
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC---CCCccEEEeCCCC-----c----
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW---PLVSGHIAKPGVG-----S---- 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~---~p~~G~I~i~g~~-----~---- 509 (1064)
...|+++|+++.|+ ++++|+|+||+|++|+++|||||||||||||+|+|+|.. .|++|+|.+.++. .
T Consensus 175 ~~~I~i~nls~~y~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 175 IKDIHMENFSISVG-GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred ceeEEEceEEEEeC-CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 34699999999995 567999999999999999999999999999999999964 4677887643221 0
Q ss_pred -----------cccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC-------------------CCCHHHHHHHHHhcC
Q 001511 510 -----------DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-------------------PLTHGGMVELLKNVD 559 (1064)
Q Consensus 510 -----------~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~-------------------~~~~~~i~~~l~~~~ 559 (1064)
.+++.+++++|+|.+...+..+|...+.. ..... ...++++.+++..+|
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lg 332 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANK-DGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLS 332 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccc-cccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCC
Confidence 01233566666654322222222211100 00000 012345666777777
Q ss_pred Ch-hHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHH
Q 001511 560 LE-YLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALV 638 (1064)
Q Consensus 560 L~-~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i 638 (1064)
+. +..++.+ .+||||||||++|||||+.+|++|||||||++||+.+..++.+.+++.+.|+|+||||+..+
T Consensus 333 l~~~~~~~~~--------~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l 404 (718)
T PLN03073 333 FTPEMQVKAT--------KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFL 404 (718)
T ss_pred CChHHHhCch--------hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHH
Confidence 75 3444444 48999999999999999999999999999999999999999999999999999999999988
Q ss_pred H-hcCEEEEEeCC
Q 001511 639 A-FHDVVLSLDGE 650 (1064)
Q Consensus 639 ~-~~D~Il~l~~~ 650 (1064)
. .||+|++|+++
T Consensus 405 ~~~~d~i~~l~~g 417 (718)
T PLN03073 405 NTVVTDILHLHGQ 417 (718)
T ss_pred HHhCCEEEEEECC
Confidence 6 59999999964
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-29 Score=259.10 Aligned_cols=197 Identities=22% Similarity=0.268 Sum_probs=150.7
Q ss_pred EEEeeEEEcC----CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccE
Q 001511 446 EFSGVKVVTP----TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEI 515 (1064)
Q Consensus 446 ~~~nvs~~y~----~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i 515 (1064)
++.|..+.+. ..+++|+++|++|++|+++.|+|.||||||||+++|+|-.+|++|+|.+||.+ ......+
T Consensus 3 ~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~l 82 (263)
T COG1101 3 SLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLL 82 (263)
T ss_pred ccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHH
Confidence 3445555432 24689999999999999999999999999999999999999999999999976 1223468
Q ss_pred EEEecCCC---CCcccHHHHhcCCCCCC---CcCCC---CCHHHHHHHHHhcCC--hhHHhcCCCCcccCCCCCcChHHH
Q 001511 516 FYVPQRPY---TAVGTLRDQLIYPLTSD---QEVEP---LTHGGMVELLKNVDL--EYLLDRYPPEKEINWGDELSLGEQ 584 (1064)
Q Consensus 516 ~~v~Q~p~---l~~~Ti~eni~~~~~~~---~~~~~---~~~~~i~~~l~~~~L--~~~~~~~p~~~~~~~g~~LSGGqr 584 (1064)
+-|||||. .+..||.||+....... +.... ...+...+-++.+++ +..++. +..-||||||
T Consensus 83 arVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~--------~iglLSGGQR 154 (263)
T COG1101 83 ARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSD--------RIGLLSGGQR 154 (263)
T ss_pred HHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcC--------hhhhccchHH
Confidence 88999996 35679999998753221 11110 111223344444443 222222 1236999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH----HHhcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAK----VRAMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 585 QRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~----l~~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|-++++.|-++.|+||+|||-|+||||.+.+.+++. +.+.+.|.+||||.++.+ .+-+|.++|+++
T Consensus 155 QalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G 225 (263)
T COG1101 155 QALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSG 225 (263)
T ss_pred HHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCC
Confidence 999999999999999999999999999999988865 455689999999999865 678999999875
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-29 Score=254.39 Aligned_cols=199 Identities=26% Similarity=0.350 Sum_probs=168.1
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCC-CC-c-----c-cccc
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-VG-S-----D-LNKE 514 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g-~~-~-----~-lr~~ 514 (1064)
..++++||+++| ++-.+|+|+||++.+||.-+|+||||+||||++.+|.|--+|++|++.++| .+ . . -|..
T Consensus 4 ~iL~~~~vsVsF-~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 4 IILYLDGVSVSF-GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred ceEEEeceEEEE-cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 468999999998 467899999999999999999999999999999999999999999999999 33 1 1 2567
Q ss_pred EEEEecCCCCCc-ccHHHHhcCCCCCCCc--------CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHH
Q 001511 515 IFYVPQRPYTAV-GTLRDQLIYPLTSDQE--------VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 515 i~~v~Q~p~l~~-~Ti~eni~~~~~~~~~--------~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
||-=||.|..|. .||+||+......++. ...+..+++.++|...||.+..++.. ..||-||||
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A--------~~LSHGqKQ 154 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLA--------ALLSHGQKQ 154 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhh--------hhhccchhh
Confidence 888899999886 5999999875443221 11234458999999999998777654 479999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
++.|++.++.+|++|+||||++|+..+..++.-++++. ...++++|.||+..++ .+|+|-||+.+
T Consensus 155 wLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G 222 (249)
T COG4674 155 WLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEG 222 (249)
T ss_pred hhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEecc
Confidence 99999999999999999999999977766666666665 3789999999999986 69999999865
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-28 Score=287.71 Aligned_cols=190 Identities=23% Similarity=0.322 Sum_probs=164.7
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
...++++|+++.|++++++++++||.|.+|+++||+||||+|||||+|+|+|...|.+|+|.+.. .-++||.+|+
T Consensus 319 ~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-----~v~igyf~Q~ 393 (530)
T COG0488 319 KLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-----TVKIGYFDQH 393 (530)
T ss_pred CeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-----ceEEEEEEeh
Confidence 45799999999997778999999999999999999999999999999999999999999998753 2369999998
Q ss_pred CC-C-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 522 PY-T-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 522 p~-l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
.. + ...|+.|++....+. ..+..+...|.++++..-....| ...||||||-|+.+|+.++.+|.+
T Consensus 394 ~~~l~~~~t~~d~l~~~~~~------~~e~~~r~~L~~f~F~~~~~~~~-------v~~LSGGEk~Rl~La~ll~~~pNv 460 (530)
T COG0488 394 RDELDPDKTVLEELSEGFPD------GDEQEVRAYLGRFGFTGEDQEKP-------VGVLSGGEKARLLLAKLLLQPPNL 460 (530)
T ss_pred hhhcCccCcHHHHHHhhCcc------ccHHHHHHHHHHcCCChHHHhCc-------hhhcCHhHHHHHHHHHHhccCCCE
Confidence 73 2 455899998754322 12677889999999964322223 247999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDG 649 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1064)
|||||||+.||.++.+.+.++|.+..-|+|+||||..++. .|++|+.+++
T Consensus 461 LiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 461 LLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC
Confidence 9999999999999999999999999999999999999986 5899999987
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-29 Score=250.79 Aligned_cols=199 Identities=26% Similarity=0.319 Sum_probs=160.3
Q ss_pred cEEEEeeEEEcC----CC--CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---------
Q 001511 444 YIEFSGVKVVTP----TG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--------- 508 (1064)
Q Consensus 444 ~i~~~nvs~~y~----~~--~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--------- 508 (1064)
.+.++||+++|. ++ -++++|+||+++.||++++-||||+|||||+|.|-+-|.|++|+|.+.-.+
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 478888888763 23 379999999999999999999999999999999999999999999986432
Q ss_pred -c---c-ccccEEEEecCCC-CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChH
Q 001511 509 -S---D-LNKEIFYVPQRPY-TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLG 582 (1064)
Q Consensus 509 -~---~-lr~~i~~v~Q~p~-l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGG 582 (1064)
. + .|+.||||+|--- ++.-+-.|.+..|....+...+...+++.+++.++++.+.+=.++. .++|||
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaP-------aTFSGG 156 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAP-------ATFSGG 156 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCC-------cccCCc
Confidence 0 1 2568999999642 3444445555555443333333455678889999999866555543 589999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeC
Q 001511 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDG 649 (1064)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~ 649 (1064)
|||||.|||.++.+-+||+|||||++||..+.+.+.+++.+ .|..+|=|=||.+.-+ .|||++.+..
T Consensus 157 EqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 157 EQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 99999999999999999999999999999999998888764 5999999999998765 5899998864
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=287.77 Aligned_cols=268 Identities=18% Similarity=0.221 Sum_probs=231.0
Q ss_pred ccccCCceeecCCCeeehhHHHHHHh----hHHHHHHhhcCCceehhHhhcCHHHHHHHHHHHHHHhhhHHHHhhHHHHH
Q 001511 746 FKVLVPTVFDKQGAQLLAVAFLVVSR----TWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHL 821 (1064)
Q Consensus 746 Cri~iP~l~s~e~g~lv~c~~~lv~R----t~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~~~~~~~pas~~n~~l~~~ 821 (1064)
..+..|.+.++........+..+++= +...++++.=+|.+-.+|-++|...|...+..+..++.-.-.++..-.|+
T Consensus 30 w~i~r~yw~~~~~~~~~~l~~~i~~~~l~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v~~~~L 109 (604)
T COG4178 30 WMIARAYWASPVRKRAWLLLIGILALILLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNVAQTWL 109 (604)
T ss_pred HHHhhhhccCccchHHHHHHHHHHHHHHHHhheeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555544443344333333 44456677778889999999999999999999998888777788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCceEEeccC--CCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHHHHHh
Q 001511 822 TARLALGWRIRMTQHLLKSYLRKNSFYKVFNMS--SKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKAL 899 (1064)
Q Consensus 822 ~~~l~l~~R~rLt~~~~~~Yl~~~~~Y~~~~l~--~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~ 899 (1064)
+.++.++||.+||+|++++||+++.||++.+.+ +-++||||||++||..||++..+|.-+++++++.++-|+.-|+.+
T Consensus 110 ~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~l 189 (604)
T COG4178 110 NQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSL 189 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999997 778999999999999999999999999999999999999999987
Q ss_pred hCC----------chh----HHHHHHHHHHHHHHHhcCCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHH
Q 001511 900 TGQ----------RGV----AILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKA 965 (1064)
Q Consensus 900 ~g~----------~g~----~~~~~~~~~~~~~lr~~~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~ 965 (1064)
.|. ..| ..++.|.++++.+.-.+.||+.+|..+.+++||+|||.|.|+..|||+||||+|++.||.
T Consensus 190 sg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~ 269 (604)
T COG4178 190 SGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERR 269 (604)
T ss_pred cCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHH
Confidence 662 223 344567777777766999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHHHHHHHhh
Q 001511 966 MIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAME 1014 (1064)
Q Consensus 966 ~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~~~~~~~~~~ 1014 (1064)
.+++.|...++-.+++..+-..|..+.+-+ -++..++.+.++++.+|.
T Consensus 270 ~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy-~~~s~v~P~li~ap~~f~ 317 (604)
T COG4178 270 RLDDRFDAVLGNWRRLVRAQIRLTWFQLGY-GWLSVVLPILIAAPRYFS 317 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhhhh-hHHHHHHHHHhccHhhhc
Confidence 999999999999999999999999999866 566779999999999986
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=260.17 Aligned_cols=178 Identities=17% Similarity=0.266 Sum_probs=147.0
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCC--CCCcccHHHHhcC
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRP--YTAVGTLRDQLIY 535 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p--~l~~~Ti~eni~~ 535 (1064)
.++|+||||++++||.+||+|+||||||||+|+|+|.++|++|+|.++|. ++.+..-. +-+..|-+|||.+
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~-------v~~li~lg~Gf~pelTGreNi~l 112 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-------VAPLIELGAGFDPELTGRENIYL 112 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce-------EehhhhcccCCCcccchHHHHHH
Confidence 47999999999999999999999999999999999999999999999983 44333222 2234689999976
Q ss_pred CCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 001511 536 PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615 (1064)
Q Consensus 536 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~ 615 (1064)
-....+...++.++.+.++.+-.+|.+|++... .++|.||+-|+++|-|...+|+|||+||..+.-|+.-++
T Consensus 113 ~~~~~G~~~~ei~~~~~eIieFaELG~fi~~Pv--------ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~ 184 (249)
T COG1134 113 RGLILGLTRKEIDEKVDEIIEFAELGDFIDQPV--------KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQE 184 (249)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHHHHHhhCch--------hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHH
Confidence 322222223356777888999999999998743 589999999999999999999999999999999998877
Q ss_pred HHHHHHH---hcCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 616 RFCAKVR---AMGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 616 ~l~~~l~---~~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
+-.+.+. +.+.|+|+|||+++.++ .||++++|+++
T Consensus 185 K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G 223 (249)
T COG1134 185 KCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHG 223 (249)
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCC
Confidence 6554443 35799999999999986 69999999975
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-29 Score=326.11 Aligned_cols=190 Identities=15% Similarity=0.166 Sum_probs=151.9
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC----CCCccEEEeCCCC-----ccccccEEEEecCCCCC-cc
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW----PLVSGHIAKPGVG-----SDLNKEIFYVPQRPYTA-VG 527 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~----~p~~G~I~i~g~~-----~~lr~~i~~v~Q~p~l~-~~ 527 (1064)
+++|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|.+ ...|+.++||+|++.++ ..
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 46999999999999999999999999999999999986 5799999999975 23466799999997655 56
Q ss_pred cHHHHhcCCCCCCC-------cCCCCCHHH-HHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCE
Q 001511 528 TLRDQLIYPLTSDQ-------EVEPLTHGG-MVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599 (1064)
Q Consensus 528 Ti~eni~~~~~~~~-------~~~~~~~~~-i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~i 599 (1064)
|++||+.++..... ..+++..++ +.++++.+||.+..+..+.+ .....|||||||||+|||+|+.+|++
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~---~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGN---DFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCC---CcCCCCCcccchHHHHHHHHHhCCCE
Confidence 99999988532110 000011123 34578999998766554321 12347999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChh-H-HHhcCEEEEEeCC
Q 001511 600 AILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPA-L-VAFHDVVLSLDGE 650 (1064)
Q Consensus 600 liLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~-~-i~~~D~Il~l~~~ 650 (1064)
++|||||+|||+.+...+.+.+++ .|+|+|+++|+++ . ...+|++++|+++
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G 287 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEG 287 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCC
Confidence 999999999999999998887764 3899999999973 3 4579999999864
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-29 Score=252.74 Aligned_cols=183 Identities=27% Similarity=0.373 Sum_probs=149.3
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEEe
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP 519 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v~ 519 (1064)
++.+|++..- ++..++.++||++.+||.+-|.||||||||||+|+|+|+.+|++|+|.++|.+ ++.++.+-|+-
T Consensus 3 L~a~~L~~~R-~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 3 LEAENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred chhhhhhhcc-CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 4556666543 45689999999999999999999999999999999999999999999999854 22345566666
Q ss_pred cCCCC-CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 520 QRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 520 Q~p~l-~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
-.|-+ ...|+.||+.|-...+.. ...+.+.++++.+||.++.+-.. .+||-|||+||||||.++..++
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~--------~~LSAGQqRRvAlArL~ls~~p 150 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPV--------GQLSAGQQRRVALARLWLSPAP 150 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccch--------hhcchhHHHHHHHHHHHcCCCC
Confidence 55555 456999999985443221 34567999999999998766533 4899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA 639 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~ 639 (1064)
+.||||||++||.+.+..+-..+.+ .|-.||..||..--+.
T Consensus 151 LWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 151 LWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred ceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 9999999999999999988877764 4888999999876543
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-29 Score=264.30 Aligned_cols=178 Identities=24% Similarity=0.304 Sum_probs=140.6
Q ss_pred eeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----ccccccEEEEe-cCCCCCc-----c
Q 001511 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKEIFYVP-QRPYTAV-----G 527 (1064)
Q Consensus 459 ~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~~lr~~i~~v~-Q~p~l~~-----~ 527 (1064)
++++||||+|++|++++++||||+||||++|+|.|+..|++|.|.++|.+ ++.-+++++|+ |...+.. .
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 59999999999999999999999999999999999999999999999975 12224566554 3332211 1
Q ss_pred --cHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCC
Q 001511 528 --TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605 (1064)
Q Consensus 528 --Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEP 605 (1064)
.|-..| |-.+ ...-.++....-+.++++.+++... ..||-|||.|+.||.||+|+|++|+||||
T Consensus 118 s~~v~~~I-y~Ip-----d~~F~~r~~~l~eiLdl~~~lk~~v--------r~LSlGqRmraeLaaaLLh~p~VLfLDEp 183 (325)
T COG4586 118 SLEVLKLI-YEIP-----DDEFAERLDFLTEILDLEGFLKWPV--------RKLSLGQRMRAELAAALLHPPKVLFLDEP 183 (325)
T ss_pred hHHHHHHH-HhCC-----HHHHHHHHHHHHHHhcchhhhhhhh--------hhccchHHHHHHHHHHhcCCCcEEEecCC
Confidence 222222 1111 1122355666777778887776643 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHHH-hcCEEEEEeCC
Q 001511 606 TSAVTTDMEERFCAKVRA----MGTSCITISHRPALVA-FHDVVLSLDGE 650 (1064)
Q Consensus 606 TSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i~-~~D~Il~l~~~ 650 (1064)
|-+||+..+..+.+.+++ .+.||+..||+++.+. -||||++++.+
T Consensus 184 TvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~G 233 (325)
T COG4586 184 TVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQG 233 (325)
T ss_pred ccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCC
Confidence 999999999999988865 4899999999999765 79999999975
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-28 Score=295.70 Aligned_cols=205 Identities=23% Similarity=0.299 Sum_probs=170.6
Q ss_pred CcEEEEeeEEEcCCC----CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC---CccEEEeCCCC---cccc
Q 001511 443 NYIEFSGVKVVTPTG----NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL---VSGHIAKPGVG---SDLN 512 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~----~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p---~~G~I~i~g~~---~~lr 512 (1064)
..+.++|+++..+++ +.+|+|||.++++||++||+||||||||||+++|+|-.+. .+|+|.+||+. +.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 458899999876553 6899999999999999999999999999999999999875 79999999954 4578
Q ss_pred ccEEEEecCCCC-CcccHHHHhcCCCCCCC---cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHH
Q 001511 513 KEIFYVPQRPYT-AVGTLRDQLIYPLTSDQ---EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588 (1064)
Q Consensus 513 ~~i~~v~Q~p~l-~~~Ti~eni~~~~~~~~---~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1064)
+..|||.||..+ +..||+|++.|.....- ....+.+++++++++.+|+.+..+....+. ....+|||||+||+
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~---~~rgiSGGErkRvs 180 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNP---GIRGLSGGERKRVS 180 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCC---CCCccccchhhHHH
Confidence 899999999875 46799999988543221 122345678999999999987665543211 12579999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhH--HHhcCEEEEEeCC
Q 001511 589 MARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPAL--VAFHDVVLSLDGE 650 (1064)
Q Consensus 589 IARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~--i~~~D~Il~l~~~ 650 (1064)
||.-+++||++|+|||||||||..+..++.+.|++ .|+|||+.=|+++. ....|+++.|.+|
T Consensus 181 ia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G 247 (613)
T KOG0061|consen 181 IALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEG 247 (613)
T ss_pred HHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCC
Confidence 99999999999999999999999999998887764 49999999999874 4678999999865
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-28 Score=260.92 Aligned_cols=178 Identities=21% Similarity=0.247 Sum_probs=124.0
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCCCchhHHH-HHhcccCCCCccEEEeC-----------C--C-C--cccc-ccEEEE
Q 001511 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLF-RVLGGLWPLVSGHIAKP-----------G--V-G--SDLN-KEIFYV 518 (1064)
Q Consensus 457 ~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl-~lL~Gl~~p~~G~I~i~-----------g--~-~--~~lr-~~i~~v 518 (1064)
+.++|+|+||+|++||+++|+||||||||||+ ..+.. +|++.+. + . . ...+ ...++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 45799999999999999999999999999996 33321 2322110 0 0 0 0111 234555
Q ss_pred ecCCCC---CcccHH---HHhcCCCCCCCcCCCCCHHHHHHHHHhcCChh-HHhcCCCCcccCCCCCcChHHHHHHHHHH
Q 001511 519 PQRPYT---AVGTLR---DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY-LLDRYPPEKEINWGDELSLGEQQRLGMAR 591 (1064)
Q Consensus 519 ~Q~p~l---~~~Ti~---eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~-~~~~~p~~~~~~~g~~LSGGqrQRlaIAR 591 (1064)
.|++.. +..++. +...+..... ......+..+.++.+++.+ ..++.| .+||||||||++|||
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~--------~~LSgG~~qrv~lar 150 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLF---ARVGIRERLGFLVDVGLGYLTLSRSA--------PTLSGGEAQRIRLAT 150 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHCCCCcccccCcc--------CcCCHHHHHHHHHHH
Confidence 665532 122332 2221100000 0111223357889999976 356666 389999999999999
Q ss_pred HHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 592 LFYHKP--KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 592 AL~~~P--~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
||+.+| +++||||||++||+.+...+.+.+++ .|.|+|+|||+++.+..||++++|+.+
T Consensus 151 al~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~ 214 (226)
T cd03270 151 QIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPG 214 (226)
T ss_pred HHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCC
Confidence 999998 59999999999999999998887753 589999999999999999999999543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-28 Score=318.35 Aligned_cols=190 Identities=17% Similarity=0.209 Sum_probs=150.8
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCC---ccEEEeCCCC---ccccccEEEEecCCCCC-cccHH
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLV---SGHIAKPGVG---SDLNKEIFYVPQRPYTA-VGTLR 530 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~---~G~I~i~g~~---~~lr~~i~~v~Q~p~l~-~~Ti~ 530 (1064)
+.+|+|+|+.|++||.++|+||||||||||+|+|+|+.+|+ +|+|.++|.+ ...++.++||+|++.++ ..||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 46999999999999999999999999999999999999998 9999999975 12367899999997654 57999
Q ss_pred HHhcCCCCCCCc----------CCCC--------C----------------HHHHHHHHHhcCChhHHhcCCCCcccCCC
Q 001511 531 DQLIYPLTSDQE----------VEPL--------T----------------HGGMVELLKNVDLEYLLDRYPPEKEINWG 576 (1064)
Q Consensus 531 eni~~~~~~~~~----------~~~~--------~----------------~~~i~~~l~~~~L~~~~~~~p~~~~~~~g 576 (1064)
||+.++...... ...+ . ...+.++++.+||++..+....+ ...
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~---~~~ 334 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGD---EMI 334 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCC---ccc
Confidence 999875321100 0000 0 01235678888887654332211 112
Q ss_pred CCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccCh--hHHHhcCEEEEEeCC
Q 001511 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRP--ALVAFHDVVLSLDGE 650 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l--~~i~~~D~Il~l~~~ 650 (1064)
..|||||||||+||++|+.+|++++|||||+|||+.+..++.+.+++ .|+|+|+++|++ +....+|+|++|+++
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 47999999999999999999999999999999999999999887765 389999999986 345689999999864
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-28 Score=242.90 Aligned_cols=130 Identities=43% Similarity=0.664 Sum_probs=112.1
Q ss_pred eeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcc-cHHHHh
Q 001511 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVG-TLRDQL 533 (1064)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~-Ti~eni 533 (1064)
|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ...++.++|++|++.++.. |+.||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 789999999999999999999999999999999999999999999864 2457899999999887765 69999
Q ss_pred cCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001511 534 IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607 (1064)
Q Consensus 534 ~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTS 607 (1064)
..++++.++++.+++.++.++... ....+||||||||++|||||+++|+++||||||+
T Consensus 80 ------------~~~~~~~~~l~~l~~~~~~~~~~~----~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------------ESDERIEEVLKKLGLEDLLDRKIG----QRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------------HHHHHHHHHHHHTTHGGGTGSBGT----SCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------------cccccccccccccccccccccccc----cccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 135678889999988775554331 1125899999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PRK12369 putative transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=258.22 Aligned_cols=255 Identities=15% Similarity=0.089 Sum_probs=226.8
Q ss_pred HHHHHHhhHHHHHHhhcCCceehhHhhc-------CHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001511 765 AFLVVSRTWISDRIASLNGTTVKYVLEQ-------DKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHL 837 (1064)
Q Consensus 765 ~~~lv~Rt~ls~~va~l~g~~v~~iv~~-------~~~~F~~~l~~~~~~~~pas~~n~~l~~~~~~l~l~~R~rLt~~~ 837 (1064)
-++.++-+.+++++...++..-.+|-++ |.++|...+..+.++++.+..++..-.|++++|+++||+.||+|+
T Consensus 23 i~l~l~~v~~~v~~n~w~~~fy~aL~~~~~~~~~~~~~~f~~~l~~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~ 102 (326)
T PRK12369 23 LLSLWYQVSLNVAINEWYGDFYDLLQKAKIEPNNHTAGDFWASILSFLAIAMPYVLIATVVDYFASHYAFRWREAMTFSY 102 (326)
T ss_pred HHHHHHHHHHhhhhhHHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445788999999999999999999996 799999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHHHHHhh-----------CCchhH
Q 001511 838 LKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALT-----------GQRGVA 906 (1064)
Q Consensus 838 ~~~Yl~~~~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~-----------g~~g~~ 906 (1064)
++.|+. .|+.++||||||++||+.||+...+|+..+++++++++.|+.-|++.. ++..+.
T Consensus 103 l~~wl~---------~~~~iDNPDQRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~ 173 (326)
T PRK12369 103 LKFWRN---------KRDNIEGSSQRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVW 173 (326)
T ss_pred HHHHhc---------CCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHH
Confidence 999996 457799999999999999999999999999999999999999999944 334456
Q ss_pred HHHHHHHHHHHHHHhcCCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 907 ILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKW 986 (1064)
Q Consensus 907 ~~~~~~~~~~~~lr~~~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~ 986 (1064)
..++|.++++.+...+.+|+.++..++|+.|++||+.|.|+.+|+|. | .|+..+++.|.++++..+.+++...
T Consensus 174 ~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~---~----~E~~~l~~~f~~v~~n~~~~~~~~~ 246 (326)
T PRK12369 174 IALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN---Y----AKPETLIELFTGLRFNYFRLFLHYG 246 (326)
T ss_pred HHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh---h----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999 5 8999999999999999999999999
Q ss_pred HHHhhHHHHHhhhhhhhhhHHHHHHHhhhcCCccccchhHHHHHHHhHHHHHH
Q 001511 987 LFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGEIRMIMNLIHCLD 1039 (1064)
Q Consensus 987 ~~~~~~~~~~Ky~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1064)
+.+++.+. ..|++.++++.++++.++. +.-.++.--+.+..+..+.-.+
T Consensus 247 ~l~~~~~~-y~~~~~i~p~li~aP~y~s---g~i~lG~l~Q~~~AF~~v~~al 295 (326)
T PRK12369 247 YFNIWLIS-FSQMMVIVPYLIMAPGLFA---GVITLGVLMQISNAFSQVRSSF 295 (326)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHHHHHH
Confidence 99999995 5899999999999999996 3334444445555555554433
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=251.39 Aligned_cols=160 Identities=24% Similarity=0.327 Sum_probs=128.6
Q ss_pred eeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCc---------cEEEeCCCC---ccccccEEEEecCCCCCcccH
Q 001511 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS---------GHIAKPGVG---SDLNKEIFYVPQRPYTAVGTL 529 (1064)
Q Consensus 462 ~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~---------G~I~i~g~~---~~lr~~i~~v~Q~p~l~~~Ti 529 (1064)
+++++++++| +++|+||||||||||+++|.|+.+|.. |++.+.|.+ ...+++++++||+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 999999999999999999999987663 356666644 12357899999999766
Q ss_pred HHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc----cCCCEEEEeCC
Q 001511 530 RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY----HKPKFAILDEC 605 (1064)
Q Consensus 530 ~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~----~~P~iliLDEP 605 (1064)
++.. ..+++.++++. .+..++.| .+||||||||++|||+++ .+|+++|||||
T Consensus 89 -----~~~~--------~~~~~~~~l~~---~~~~~~~~--------~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 -----YSII--------SQGDVSEIIEA---PGKKVQRL--------SLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred -----eeEE--------ehhhHHHHHhC---CCccccch--------hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 2211 12356667666 23333333 489999999999999986 56799999999
Q ss_pred CCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 606 TSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 606 TSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
|++||+.....+.+.+++. +.|+|+|||+++.+..+|+++.+...
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~~ 191 (197)
T cd03278 145 DAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTMQ 191 (197)
T ss_pred cccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEec
Confidence 9999999999999888763 78999999999999999999999754
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-25 Score=242.59 Aligned_cols=174 Identities=22% Similarity=0.259 Sum_probs=125.0
Q ss_pred eeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhc-----c-cC----CCCccEEEeCCCCccccccEEEEecCCC-----
Q 001511 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLG-----G-LW----PLVSGHIAKPGVGSDLNKEIFYVPQRPY----- 523 (1064)
Q Consensus 459 ~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~-----G-l~----~p~~G~I~i~g~~~~lr~~i~~v~Q~p~----- 523 (1064)
.-|+|||++|+.|+.++|+|+||||||||++-+. + ++ .|..++...+.. . -.++-+|-|.|.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~--~-~~~~~~vdq~pi~~~~r 85 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLE--H-IDKVIVIDQSPIGRTPR 85 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCccccccccc--c-cCceEEecCCcCCCCCC
Confidence 4699999999999999999999999999998652 1 11 133332211110 0 011333333331
Q ss_pred ------------------------------------------CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh
Q 001511 524 ------------------------------------------TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 561 (1064)
Q Consensus 524 ------------------------------------------l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~ 561 (1064)
....|+.|++.+.... ...++..++++.+||.
T Consensus 86 s~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~------~~~~~~~~~L~~vgL~ 159 (261)
T cd03271 86 SNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI------PKIARKLQTLCDVGLG 159 (261)
T ss_pred CcHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh------hhHHHHHHHHHHcCCc
Confidence 1233555555442211 0124566788888987
Q ss_pred hH-HhcCCCCcccCCCCCcChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccC
Q 001511 562 YL-LDRYPPEKEINWGDELSLGEQQRLGMARLFYHK---PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHR 634 (1064)
Q Consensus 562 ~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~---P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~ 634 (1064)
+. .++.+ .+|||||+||++|||+|+.+ |+++||||||++||+.....+.+.+++ .|.|+|+|||+
T Consensus 160 ~l~l~~~~--------~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~ 231 (261)
T cd03271 160 YIKLGQPA--------TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHN 231 (261)
T ss_pred hhhhcCcc--------ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 63 45544 48999999999999999996 799999999999999999998887654 48999999999
Q ss_pred hhHHHhcCEEEEEeC
Q 001511 635 PALVAFHDVVLSLDG 649 (1064)
Q Consensus 635 l~~i~~~D~Il~l~~ 649 (1064)
++.++.+|++++|..
T Consensus 232 ~~~i~~aD~ii~Lgp 246 (261)
T cd03271 232 LDVIKCADWIIDLGP 246 (261)
T ss_pred HHHHHhCCEEEEecC
Confidence 999999999999953
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-25 Score=283.59 Aligned_cols=201 Identities=20% Similarity=0.220 Sum_probs=171.1
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccE
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEI 515 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i 515 (1064)
..+..+|+++.|+..+.+++++|+.|++||+.|+.|+|||||||++++|.|..+|++|++.++|.+ .+.++.+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 568999999999654449999999999999999999999999999999999999999999999875 1367889
Q ss_pred EEEecCCCCCc-ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 516 FYVPQRPYTAV-GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 516 ~~v~Q~p~l~~-~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
||+||+..+.. .|.+|.+.+-...++.....-.+.+...++.+++.+..++.. ..+|||+|+|+++|-|++
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~--------~~ySgG~kRkLs~aiali 714 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQV--------RTYSGGNKRRLSFAIALI 714 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccch--------hhCCCcchhhHHHHHHHh
Confidence 99999877654 699999976443333222233456788999999998887753 479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001511 595 HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1064)
Q Consensus 595 ~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1064)
.+|++++|||||+|+||.+++.+.+.+.+ .|+.+|++||.++..+ -|||+..|.++.
T Consensus 715 g~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~ 775 (885)
T KOG0059|consen 715 GDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQ 775 (885)
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCe
Confidence 99999999999999999999998887654 4569999999999987 599999998753
|
|
| >PRK12369 putative transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-22 Score=225.30 Aligned_cols=297 Identities=14% Similarity=0.147 Sum_probs=234.6
Q ss_pred HHHhhchhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ChhHHHHHHHHHHHHHHHHHHHHHH
Q 001511 93 AILLSEMGKMGARDLL--ALVGIVVLRTALSNRLAKVQGFLFRAAFLR-------RVPLFFQLISENILLCFLLSTMHST 163 (1064)
Q Consensus 93 ~~~~p~~~~~~~~~ll--~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~-------~~~~~~~~l~~~~~l~~~~~~~~~~ 163 (1064)
+|+++.++. .+.+++ +++++.+..+.+++.++.|.+.|+|++..+ +.+.|+..+..+.+++++...+...
T Consensus 4 ~~~~~~~~~-~~~ll~~~~~i~l~l~~v~~~v~~n~w~~~fy~aL~~~~~~~~~~~~~~f~~~l~~f~~~~~~~v~~~v~ 82 (326)
T PRK12369 4 SFFASKKWA-LWAYGGLFFILLSLWYQVSLNVAINEWYGDFYDLLQKAKIEPNNHTAGDFWASILSFLAIAMPYVLIATV 82 (326)
T ss_pred HHhcCCcHH-HHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666543 333444 467888888999999999999999999985 5778888887777766666667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 164 SKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLC 243 (1064)
Q Consensus 164 ~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~ 243 (1064)
..|+...+..+||+|+|+++.++|+. .++.++||||||++|++.+++....+...++.+++..+.|+.+|+
T Consensus 83 ~~~~~~~l~i~WR~wLT~~~l~~wl~---------~~~~iDNPDQRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW 153 (326)
T PRK12369 83 VDYFASHYAFRWREAMTFSYLKFWRN---------KRDNIEGSSQRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILW 153 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---------CCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999996 235689999999999999999999999999999888887766665
Q ss_pred HH----------hhhhHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Q 001511 244 SY----------ASPKYVFWI-LAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESH 312 (1064)
Q Consensus 244 ~~----------~~~~L~li~-l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~ 312 (1064)
.. ..|++.+++ +++..+...++.++|+++.+++.++|+.||++|..+.+++++.|. | .|.+.
T Consensus 154 ~lS~~l~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~---~----~E~~~ 226 (326)
T PRK12369 154 GLSDGVSLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN---Y----AKPET 226 (326)
T ss_pred HhCCCceeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh---h----hhHHH
Confidence 41 123444444 556666677888999999999999999999999999999999887 3 56678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 001511 313 IQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQS 392 (1064)
Q Consensus 313 l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~ 392 (1064)
++++|+++.+++++..+...+.++++..+. .+...++.++..|.++.|.+ ++|... .....+.....+
T Consensus 227 l~~~f~~v~~n~~~~~~~~~~l~~~~~~y~-~~~~i~p~li~aP~y~sg~i-----~lG~l~------Q~~~AF~~v~~a 294 (326)
T PRK12369 227 LIELFTGLRFNYFRLFLHYGYFNIWLISFS-QMMVIVPYLIMAPGLFAGVI-----TLGVLM------QISNAFSQVRSS 294 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHhCCc-----chhHHH------HHHHHHHHHHHH
Confidence 899999999998888777777787777654 34556666777777777765 555322 223345566678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001511 393 LGTLSISSRRLNRLSGYADRIHELMV 418 (1064)
Q Consensus 393 i~~l~~~~~~l~~~~~~~~Ri~ell~ 418 (1064)
++.+...+.++.+..+..+|+.++.+
T Consensus 295 ls~~v~~y~~la~~~A~~~RL~~f~~ 320 (326)
T PRK12369 295 FSVFIRNWTTITELRSIYKRLKEFEK 320 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999988765
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-25 Score=235.45 Aligned_cols=184 Identities=16% Similarity=0.138 Sum_probs=132.5
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEe-CCCEEEEEcCCCCchhHHHHHhcc-cCCCCccEEEeCCC----C-ccccccEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVE-PGSNLLITGPNGSGKSSLFRVLGG-LWPLVSGHIAKPGV----G-SDLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~-~Ge~vaIvG~sGsGKSTLl~lL~G-l~~p~~G~I~i~g~----~-~~lr~~i~ 516 (1064)
.|+++|.. .|.+. ++++|+.. +|++++|+||||||||||+++|++ ++.+..+....+.. . ......|+
T Consensus 5 ~i~l~nf~-~y~~~----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (213)
T cd03279 5 KLELKNFG-PFREE----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVS 79 (213)
T ss_pred EEEEECCc-CcCCc----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEE
Confidence 47888887 55432 56777654 589999999999999999999995 55555555443211 0 23456799
Q ss_pred EEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHH--HHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc
Q 001511 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE--LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY 594 (1064)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~--~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~ 594 (1064)
+++|++.... .+..++ ..+.++..+ .++..++.+++++.+ .+||||||||++||||++
T Consensus 80 ~~f~~~~~~~----~~~r~~--------gl~~~~~~~~~~l~~g~l~~~l~~~~--------~~lS~G~~~r~~la~al~ 139 (213)
T cd03279 80 FTFQLGGKKY----RVERSR--------GLDYDQFTRIVLLPQGEFDRFLARPV--------STLSGGETFLASLSLALA 139 (213)
T ss_pred EEEEECCeEE----EEEEec--------CCCHHHHHHhhhhhhcchHHHhcCCc--------cccCHHHHHHHHHHHHHH
Confidence 9999884221 111122 122233322 244455666666655 489999999999999998
Q ss_pred c----------CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hcCEEEEEeCCCc
Q 001511 595 H----------KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FHDVVLSLDGEGE 652 (1064)
Q Consensus 595 ~----------~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~ 652 (1064)
. +|+++||||||++||+.+...+.+.+++ .+.|+|+|||+++.+. .+|++++++++|+
T Consensus 140 ~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 140 LSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred hHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 4 6799999999999999999998877654 3889999999999775 5899999987763
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-25 Score=242.15 Aligned_cols=170 Identities=17% Similarity=0.209 Sum_probs=134.3
Q ss_pred CCEEEEEcCCCCchhHHHHHhcccCCCC-ccEEEeCCC-C---c----c-ccccEEEEecCCCC----------CcccHH
Q 001511 471 GSNLLITGPNGSGKSSLFRVLGGLWPLV-SGHIAKPGV-G---S----D-LNKEIFYVPQRPYT----------AVGTLR 530 (1064)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~-~G~I~i~g~-~---~----~-lr~~i~~v~Q~p~l----------~~~Ti~ 530 (1064)
..+++||||||||||||+++|++++.++ .|++...|. + . . .+.++++++|++.. +..||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999876 468877664 2 0 1 23489999999631 245888
Q ss_pred HHhcCCCCCCC-c-CCCCCHHHHHHHHHhcCCh--------------------hHHhcCCCCcccCCCCCcChHHHHHHH
Q 001511 531 DQLIYPLTSDQ-E-VEPLTHGGMVELLKNVDLE--------------------YLLDRYPPEKEINWGDELSLGEQQRLG 588 (1064)
Q Consensus 531 eni~~~~~~~~-~-~~~~~~~~i~~~l~~~~L~--------------------~~~~~~p~~~~~~~g~~LSGGqrQRla 588 (1064)
+|+..+..... . ......+++.++++.+++. +..+..| .+||||||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~--------~~lS~G~~qr~~ 176 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESL--------TELSGGQRSLVA 176 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccc--------cccCHHHHHHHH
Confidence 88876543211 0 1223567899999999985 2222323 589999999999
Q ss_pred HHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEe
Q 001511 589 MARLFY----HKPKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 589 IARAL~----~~P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1064)
|||||+ .+|+++|+||||++||+...+.+.+.+++ .|.|+|+|||+.+....||+++-+.
T Consensus 177 la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 177 LSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 999997 57899999999999999999999988875 4889999999999999999999886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-25 Score=238.89 Aligned_cols=181 Identities=20% Similarity=0.305 Sum_probs=120.2
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC----------------CCcc--------
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP----------------LVSG-------- 500 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~----------------p~~G-------- 500 (1064)
|+++|-. +| .+..++++++ |++++|+||||||||||+++|++++. +++|
T Consensus 4 i~~~nfk-sy-~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v 76 (243)
T cd03272 4 VIIQGFK-SY-KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYV 76 (243)
T ss_pred EEEeCcc-Cc-ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEE
Confidence 4555532 24 3456788877 89999999999999999999985543 3333
Q ss_pred EEEeCCCC---------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhc--CCC
Q 001511 501 HIAKPGVG---------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR--YPP 569 (1064)
Q Consensus 501 ~I~i~g~~---------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~--~p~ 569 (1064)
+|.+++.+ ..+++.++++||++.+... ..+.+++...++.+++...... .+.
T Consensus 77 ~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~-----------------~~t~~ei~~~l~~~gl~~~~~~~~~~q 139 (243)
T cd03272 77 EIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK-----------------NVTKNDVMNLLESAGFSRSNPYYIVPQ 139 (243)
T ss_pred EEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe-----------------EcCHHHHHHHHHHcCCCCCCCcEEEEc
Confidence 33332211 0122334444443332210 1234455555555555321000 000
Q ss_pred ----------CcccCCCCCcChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEcc
Q 001511 570 ----------EKEINWGDELSLGEQQRLGMARLFY----HKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISH 633 (1064)
Q Consensus 570 ----------~~~~~~g~~LSGGqrQRlaIARAL~----~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH 633 (1064)
+.....+.+||||||||++||||++ .+|+++|+||||++||+.+++.+.+.+++. +.|+|++||
T Consensus 140 g~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h 219 (243)
T cd03272 140 GKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTF 219 (243)
T ss_pred CchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 0001124589999999999999996 368999999999999999999999888764 789999999
Q ss_pred ChhHHHhcCEEEEEeC
Q 001511 634 RPALVAFHDVVLSLDG 649 (1064)
Q Consensus 634 ~l~~i~~~D~Il~l~~ 649 (1064)
+.+....||++++++-
T Consensus 220 ~~~~~~~~d~i~~l~~ 235 (243)
T cd03272 220 RPELLEVADKFYGVKF 235 (243)
T ss_pred CHHHHhhCCEEEEEEE
Confidence 9998889999999973
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK11098 microcin B17 transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=240.89 Aligned_cols=248 Identities=13% Similarity=0.157 Sum_probs=218.2
Q ss_pred HHHHhhHHHHHHhhcCCceehhHhh-------cCHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 767 LVVSRTWISDRIASLNGTTVKYVLE-------QDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLK 839 (1064)
Q Consensus 767 ~lv~Rt~ls~~va~l~g~~v~~iv~-------~~~~~F~~~l~~~~~~~~pas~~n~~l~~~~~~l~l~~R~rLt~~~~~ 839 (1064)
+.+.-+.+++++...++..-.+|-+ +|.+.|.+.+..+..++..+..++.+-.|+++++.++||+.||+|..+
T Consensus 100 l~l~~v~l~V~~n~w~~~FydaLq~al~~~~~~d~~~F~~~l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT~~yl~ 179 (409)
T PRK11098 100 VTWFLVQVSVAVNAWYAPFYDLIQTALSSPGKVTIGQFYSEVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMA 179 (409)
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999899988 599999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHHHHHhhCC--------chh----HH
Q 001511 840 SYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQ--------RGV----AI 907 (1064)
Q Consensus 840 ~Yl~~~~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~--------~g~----~~ 907 (1064)
.|++++ +++||||||++|+++||+...+|..++++++++++-|+.-|+..-|. ..| ..
T Consensus 180 ~Wl~~r----------~ienPDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~ 249 (409)
T PRK11098 180 HWQKLR----------HIEGAAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIA 249 (409)
T ss_pred HHHhcC----------CCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHH
Confidence 999654 58899999999999999999999999999999999999999886553 233 35
Q ss_pred HHHHHHHHHHHHHhcCCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 908 LYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWL 987 (1064)
Q Consensus 908 ~~~~~~~~~~~lr~~~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~ 987 (1064)
.+.|.++++.+...+.+|..++..++|+.|++||+.|.|+.+||| +.|+.++++.|.++++..+++++....
T Consensus 250 aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE--------~~E~~~L~~~F~~V~~N~~rl~~~~~~ 321 (409)
T PRK11098 250 AIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD--------RATPPTVRELFSNVRKNYFRLYFHYMY 321 (409)
T ss_pred HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999 669999999999999999999999999
Q ss_pred HHhhHHHHHhhhhhhhhhHHHHHHHhhhcCCccccchhHHHHHHHhHHH
Q 001511 988 FGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVSTQGEIRMIMNLIH 1036 (1064)
Q Consensus 988 ~~~~~~~~~Ky~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1064)
.+++.+.. .|+..++++.++++.++. +.-.++.--+++..+..+.
T Consensus 322 l~~f~~~y-~~~~~i~P~iv~aP~y~a---G~ItlG~l~Q~~~AF~~V~ 366 (409)
T PRK11098 322 FNIARILY-LQVDNVFGLFLLFPSIVA---GTITLGLMTQITNVFGQVR 366 (409)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHc---CCcchhHHHHHHHHHHHHH
Confidence 99999965 999999999999999886 3333333334444444433
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-25 Score=251.43 Aligned_cols=255 Identities=19% Similarity=0.224 Sum_probs=168.6
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
...|..++.+..|. ++.+|++-++++..|.++||||+||+|||||+|+|+. |.|..-...++.|..--..-|+
T Consensus 78 ~~Di~~~~fdLa~G-~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~ 150 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG-GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQS 150 (582)
T ss_pred ccceeeeeeeeeec-chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhh
Confidence 45688999999884 7889999999999999999999999999999999998 5554333222222110011111
Q ss_pred CCCCcccHHHHhcCCCCCCCcCCCCCHHHHHH-HHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEE
Q 001511 522 PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVE-LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600 (1064)
Q Consensus 522 p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~-~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~il 600 (1064)
. +-.++-+..+..-.. ......+.+++.. +|..+|..+-....|- .+||||+|.|+++||||..+||||
T Consensus 151 ~-l~~D~~~~dfl~~e~--~l~~~~~l~ei~~~~L~glGFt~emq~~pt-------~slSGGWrMrlaLARAlf~~pDlL 220 (582)
T KOG0062|consen 151 V-LESDTERLDFLAEEK--ELLAGLTLEEIYDKILAGLGFTPEMQLQPT-------KSLSGGWRMRLALARALFAKPDLL 220 (582)
T ss_pred h-hhccHHHHHHHHhhh--hhhccchHHHHHHHHHHhCCCCHHHHhccc-------cccCcchhhHHHHHHHHhcCCCEE
Confidence 1 112232332222110 0001113455666 8889999877777674 589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCCceEEeecCCCcccccccccccccccchh
Q 001511 601 ILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEGEWRVHDKRDGSSVVTKSGINMIKSSETD 679 (1064)
Q Consensus 601 iLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1064)
+|||||+.||..+..++.+.|.....|+|+||||-+.+. .|.-|+.+++.. ...+.++++.++.+..+......-+-+
T Consensus 221 LLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~k-L~~YkGN~~~Fvk~k~E~~~n~qrefe 299 (582)
T KOG0062|consen 221 LLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLK-LDYYKGNYSQFVKTKPEAKKNQQREFE 299 (582)
T ss_pred eecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhh-hhhhcCcHHHHHHhhHHhhhhhhhhcc
Confidence 999999999999999999999998999999999999875 466677776531 111233444455444332221111112
Q ss_pred hhHHHHhhhhHhhhccccccccCCCCCchHHHHHh
Q 001511 680 RQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIA 714 (1064)
Q Consensus 680 r~~~~m~~~~~~e~~~~~~~~~~~~~h~yt~~L~~ 714 (1064)
.+...-..-+.+.......+.+.+..++..+.|-.
T Consensus 300 ~q~~~R~h~q~fid~FrYna~ra~svqSRIk~L~k 334 (582)
T KOG0062|consen 300 VQMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGK 334 (582)
T ss_pred hHHHHHHHHHHHHHHhccCcccchhHHHHHHHhcc
Confidence 22212223455556666666666667777776653
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.8e-25 Score=249.97 Aligned_cols=193 Identities=18% Similarity=0.258 Sum_probs=160.3
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
.+.+.++||+|.|+++..+++++||-|..++++++|||||||||||+|++.|.+.|+.|.|...-. .++++..|+
T Consensus 387 ~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----~~~~~y~Qh 461 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----NKLPRYNQH 461 (614)
T ss_pred CCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----ccchhhhhh
Confidence 467999999999987778999999999999999999999999999999999999999999975432 245555565
Q ss_pred CC---CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 522 PY---TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 522 p~---l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
.. -...+.-|++.-.... ....+++..++.++||.......|. .+||+|||.||.+||+.+..|.
T Consensus 462 ~~e~ldl~~s~le~~~~~~~~-----~~~~e~~r~ilgrfgLtgd~q~~p~-------~~LS~Gqr~rVlFa~l~~kqP~ 529 (614)
T KOG0927|consen 462 LAEQLDLDKSSLEFMMPKFPD-----EKELEEMRSILGRFGLTGDAQVVPM-------SQLSDGQRRRVLFARLAVKQPH 529 (614)
T ss_pred hHhhcCcchhHHHHHHHhccc-----cchHHHHHHHHHHhCCCccccccch-------hhcccccchhHHHHHHHhcCCc
Confidence 42 2234666666532221 1356788889999999865555553 5899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1064)
+|+|||||++||.++...+.+.+.+..-++|+||||..++. .++.|.+.++++
T Consensus 530 lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~ 583 (614)
T KOG0927|consen 530 LLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGT 583 (614)
T ss_pred EEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCc
Confidence 99999999999999999999999999889999999999986 578888887653
|
|
| >PRK11098 microcin B17 transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-21 Score=218.55 Aligned_cols=284 Identities=14% Similarity=0.173 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 108 LALVGIVVLRTALSNRLAKVQGFLFRAAFL-------RRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVT 180 (1064)
Q Consensus 108 l~~~~l~l~~t~ls~~l~~~~~~~i~a~~~-------~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~ 180 (1064)
++++++.+..+.+++.++.|.+.|+|++.. ++.+.|++.+..++.++++...+.+...|+.+.+..+||++||
T Consensus 95 ~~il~l~l~~v~l~V~~n~w~~~FydaLq~al~~~~~~d~~~F~~~l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT 174 (409)
T PRK11098 95 ALIIFVTWFLVQVSVAVNAWYAPFYDLIQTALSSPGKVTIGQFYSEVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMN 174 (409)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677888889999999999999999997 4777888888777777776666778889999999999999999
Q ss_pred HHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhh
Q 001511 181 KLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYA-----------SPK 249 (1064)
Q Consensus 181 ~~l~~~~f~~~~~~~i~~~~~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~-----------~~~ 249 (1064)
+++.++|++.. +++||||||++|++++++...++...++.++++.+.|+.+|+... .|+
T Consensus 175 ~~yl~~Wl~~r----------~ienPDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg 244 (409)
T PRK11098 175 EYYMAHWQKLR----------HIEGAAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPY 244 (409)
T ss_pred HHHHHHHHhcC----------CCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCch
Confidence 99999998431 456899999999999999999999999999888877766665421 223
Q ss_pred HHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Q 001511 250 YVF-WILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVL 328 (1064)
Q Consensus 250 L~l-i~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~ 328 (1064)
+.+ .++++..+...++.++|+++.+++.++|+.||++|..+.++++|+| +.|...++++|+++.+++.+..
T Consensus 245 ~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE--------~~E~~~L~~~F~~V~~N~~rl~ 316 (409)
T PRK11098 245 GLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD--------RATPPTVRELFSNVRKNYFRLY 316 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 333 4455666677788899999999999999999999999999999998 4577788999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 329 HDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSG 408 (1064)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~ 408 (1064)
......++++..+. .....++.++..|.++.|.+ ++|... .....+.....+++.+...+.++.+..+
T Consensus 317 ~~~~~l~~f~~~y~-~~~~i~P~iv~aP~y~aG~I-----tlG~l~------Q~~~AF~~V~~als~~v~sy~~lael~A 384 (409)
T PRK11098 317 FHYMYFNIARILYL-QVDNVFGLFLLFPSIVAGTI-----TLGLMT------QITNVFGQVRGSFQYLINSWTTIVELLS 384 (409)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCc-----chhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777554 33445666666666777765 566422 2234455666788888889999999999
Q ss_pred HHHHHHHHHhhch
Q 001511 409 YADRIHELMVISR 421 (1064)
Q Consensus 409 ~~~Ri~ell~~~~ 421 (1064)
..+|+.++.+.-.
T Consensus 385 ~~~RL~~F~~~l~ 397 (409)
T PRK11098 385 IYKRLRSFEAALD 397 (409)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998876543
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.9e-24 Score=225.31 Aligned_cols=160 Identities=21% Similarity=0.224 Sum_probs=124.6
Q ss_pred ceEEEeCCCEEEEEcCCCCchhHHHHHh----cccCCCCccEEEeCCC---CccccccEEEEecCCC-----CC-cccHH
Q 001511 464 LTLKVEPGSNLLITGPNGSGKSSLFRVL----GGLWPLVSGHIAKPGV---GSDLNKEIFYVPQRPY-----TA-VGTLR 530 (1064)
Q Consensus 464 vsl~i~~Ge~vaIvG~sGsGKSTLl~lL----~Gl~~p~~G~I~i~g~---~~~lr~~i~~v~Q~p~-----l~-~~Ti~ 530 (1064)
.++++.+| +++|+||||||||||+++| .|..+|+.|.+..+.. ....+..+++++|++. .. ..|+.
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 34566677 9999999999999999999 4999998887652211 0233568999999982 11 13888
Q ss_pred HHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHH------HHHHHHHccCCCEEEEeC
Q 001511 531 DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR------LGMARLFYHKPKFAILDE 604 (1064)
Q Consensus 531 eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQR------laIARAL~~~P~iliLDE 604 (1064)
||+.+.. .+++.+.+ ++.+ .+||+||+|| ++||||++.+|+++++||
T Consensus 95 ~~~~~~~----------~~~~~~~~---------~~~~--------~~LS~G~~~~~~la~rlala~al~~~p~illlDE 147 (204)
T cd03240 95 ENVIFCH----------QGESNWPL---------LDMR--------GRCSGGEKVLASLIIRLALAETFGSNCGILALDE 147 (204)
T ss_pred hceeeec----------hHHHHHHH---------hcCc--------cccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 8887641 22233332 4444 4899999996 789999999999999999
Q ss_pred CCCCCCHHHHH-HHHHHHHh---c-CcEEEEEccChhHHHhcCEEEEEeCCC
Q 001511 605 CTSAVTTDMEE-RFCAKVRA---M-GTSCITISHRPALVAFHDVVLSLDGEG 651 (1064)
Q Consensus 605 PTSaLD~~~~~-~l~~~l~~---~-g~TvI~ItH~l~~i~~~D~Il~l~~~g 651 (1064)
||++||+.... .+.+.+++ . +.|+|+|||+++.+..+|++++++++|
T Consensus 148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~~ 199 (204)
T cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKDG 199 (204)
T ss_pred CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeCC
Confidence 99999999998 88877754 2 789999999999998999999998765
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-24 Score=232.25 Aligned_cols=181 Identities=17% Similarity=0.089 Sum_probs=128.6
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-cccc-ccEEEEecC
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLN-KEIFYVPQR 521 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-~~lr-~~i~~v~Q~ 521 (1064)
.|+++|.. .| ++..+++++++ ++++|+|||||||||++++|... .|.+ ...+ +++++++|+
T Consensus 5 ~l~l~nfk-~~-~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~----------~G~~~~~~~~~~i~~~~~~ 67 (212)
T cd03274 5 KLVLENFK-SY-AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV----------FGFRASKMRQKKLSDLIHN 67 (212)
T ss_pred EEEEECcc-cC-CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH----------hccCHHHhhhhhHHHHhcC
Confidence 36677765 45 45679999988 89999999999999999999722 2322 1122 468889988
Q ss_pred CCCCc-ccHHHHhcCCCCCC--------CcCCCCCHH--HHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH
Q 001511 522 PYTAV-GTLRDQLIYPLTSD--------QEVEPLTHG--GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA 590 (1064)
Q Consensus 522 p~l~~-~Ti~eni~~~~~~~--------~~~~~~~~~--~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA 590 (1064)
...+. .|.++++.+..... +........ ...++++.+++++..++.+ ..||+|||||++||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~--------~~lS~G~~~r~~la 139 (212)
T cd03274 68 SAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI--------SNLSGGEKTLSSLA 139 (212)
T ss_pred CCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch--------hhcCHHHHHHHHHH
Confidence 76543 36666555432110 000000000 0123445555554444433 47999999999999
Q ss_pred HHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeC
Q 001511 591 RLFYH----KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 591 RAL~~----~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
||++. +|+++++||||++||+.+...+.+.+++. +.|+|++||+.+..+.||++++|..
T Consensus 140 ~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 140 LVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 99963 58999999999999999999999988764 6799999999988899999999975
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-23 Score=260.89 Aligned_cols=194 Identities=23% Similarity=0.312 Sum_probs=161.9
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCC--CCccEEEeCCCC---ccccccEEEEecCC-CCCcccHH
Q 001511 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--LVSGHIAKPGVG---SDLNKEIFYVPQRP-YTAVGTLR 530 (1064)
Q Consensus 457 ~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~--p~~G~I~i~g~~---~~lr~~i~~v~Q~p-~l~~~Ti~ 530 (1064)
.+.+|+|||=-++||..+||+|+||||||||+++|+|=.. ..+|+|.++|.+ +..++.+|||.|++ +++..||+
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVr 882 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVR 882 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchH
Confidence 3579999999999999999999999999999999999653 258999999975 45788999999976 56778999
Q ss_pred HHhcCCCCCC--CcCCC-CCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC-CEEEEeCCC
Q 001511 531 DQLIYPLTSD--QEVEP-LTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP-KFAILDECT 606 (1064)
Q Consensus 531 eni~~~~~~~--~~~~~-~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P-~iliLDEPT 606 (1064)
|-+.|....+ ...+. +..+.++++++.++|+++.+.... ..|..||..||+|+.||--|+.|| .||+|||||
T Consensus 883 ESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG----~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPT 958 (1391)
T KOG0065|consen 883 ESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVG----LPGSGLSTEQRKRLTIGVELVANPSSILFLDEPT 958 (1391)
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhcc----CCCCCCCHHHhceeeEEEEEecCCceeEEecCCC
Confidence 9998854322 11111 223668899999999988877542 235789999999999999999999 999999999
Q ss_pred CCCCHHHHHHHHHHHHh---cCcEEEEEccChhH--HHhcCEEEEEeCCCceE
Q 001511 607 SAVTTDMEERFCAKVRA---MGTSCITISHRPAL--VAFHDVVLSLDGEGEWR 654 (1064)
Q Consensus 607 SaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~--i~~~D~Il~l~~~g~~~ 654 (1064)
||||..+...+++.+++ .|+||+..=|.++. .+..|+++.|+.+|..+
T Consensus 959 SGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtV 1011 (1391)
T KOG0065|consen 959 SGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTV 1011 (1391)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEE
Confidence 99999999998888775 59999999999984 47899999999877544
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.5e-23 Score=237.40 Aligned_cols=197 Identities=22% Similarity=0.299 Sum_probs=154.0
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------cccccc
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKE 514 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~ 514 (1064)
.+.++++|++.. ..++|+||++.+||++||.|--|||+|-|+++|.|..++.+|+|.++|.+ +.++..
T Consensus 261 ~~~l~v~~l~~~-----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 261 EPVLEVRNLSGG-----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred CcEEEEecCCCC-----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 346788888752 25899999999999999999999999999999999999999999999964 245678
Q ss_pred EEEEecCCC----CCcccHHHHhcCCCCCC---C-cCC-CCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHH
Q 001511 515 IFYVPQRPY----TAVGTLRDQLIYPLTSD---Q-EVE-PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ 585 (1064)
Q Consensus 515 i~~v~Q~p~----l~~~Ti~eni~~~~~~~---~-~~~-~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQ 585 (1064)
|+|||.|-- +...+|++|+..+.... . ... ....+.+.+..+.+++.. |. .. ....+||||-||
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~-----~s-~~-~~v~~LSGGNQQ 408 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKT-----PS-PE-QPIGTLSGGNQQ 408 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCccc-----CC-cc-chhhcCCchhhh
Confidence 999998763 34579999998872211 0 111 111223344445554431 11 00 123589999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 586 RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 586 RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
+|.|||.|..+|++|||||||.|+|.-++.+|++++++ .|+++|+||-++.++ ..||||+||.++
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~G 477 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREG 477 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999999988765 599999999998866 589999999864
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-24 Score=212.69 Aligned_cols=188 Identities=22% Similarity=0.294 Sum_probs=153.2
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEE
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFY 517 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~ 517 (1064)
.++++||.... -|-.+|.++..||++-+|||||||||||+-.++|+.+ .+|+|.++|.+ .++.++-+|
T Consensus 3 l~qln~v~~~t-----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 3 LMQLNDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeeccccccc-----cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHH
Confidence 46778887643 3667899999999999999999999999999999985 78999999986 345566778
Q ss_pred EecCC-CCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc-
Q 001511 518 VPQRP-YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH- 595 (1064)
Q Consensus 518 v~Q~p-~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~- 595 (1064)
+.|+. ..|...|...+....+. +...+++.+++..+++.|.+.|.. .+|||||.|||-+|-.++.
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~-----~~~a~~i~~i~~~L~l~DKL~Rs~--------~qLSGGEWQRVRLAav~LQv 143 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPD-----KTRTELLNDVAGALALDDKLGRST--------NQLSGGEWQRVRLAAVVLQI 143 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCch-----HHHHHHHHHHHhhhcccchhhhhh--------hhcCcccceeeEEeEEEEEe
Confidence 88765 35667888877764332 234456778888999988877765 3899999999999988875
Q ss_pred ----CC--CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChh-HHHhcCEEEEEeCC
Q 001511 596 ----KP--KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPA-LVAFHDVVLSLDGE 650 (1064)
Q Consensus 596 ----~P--~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~-~i~~~D~Il~l~~~ 650 (1064)
|| +++|+|||.++||...+..+.+.+.+ .|.+|||.+||++ +++++|+++.+..+
T Consensus 144 ~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG 208 (248)
T COG4138 144 TPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRG 208 (248)
T ss_pred cCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcC
Confidence 33 79999999999999999887776654 5999999999998 78999999988764
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-22 Score=222.98 Aligned_cols=176 Identities=21% Similarity=0.253 Sum_probs=123.2
Q ss_pred CEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-----c--------cccccEEEEecCCCC--CcccHHHHh-cC
Q 001511 472 SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----S--------DLNKEIFYVPQRPYT--AVGTLRDQL-IY 535 (1064)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-----~--------~lr~~i~~v~Q~p~l--~~~Ti~eni-~~ 535 (1064)
.+++|+||||||||||+.+|.++..+..|++..++.+ . ...-.+.|..|++.. +..++++.. .|
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998877877654321 0 111234444444321 122222211 11
Q ss_pred CCCCCCcCCCCCHHHHHHHHHhcCChhH--------------HhcCCCCcccCCCCCcChHHHHHHHHHHHHccC----C
Q 001511 536 PLTSDQEVEPLTHGGMVELLKNVDLEYL--------------LDRYPPEKEINWGDELSLGEQQRLGMARLFYHK----P 597 (1064)
Q Consensus 536 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~--------------~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~----P 597 (1064)
... ....+.+++.+.++.+|+..+ .+..|.........+||||||||++||||++.+ |
T Consensus 103 ~in----gk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p 178 (247)
T cd03275 103 RIN----GKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPA 178 (247)
T ss_pred EEC----CEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCC
Confidence 111 112456677889999998532 222231111112358999999999999999864 9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEccChhHHHhcCEEEEEeCCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRAM---GTSCITISHRPALVAFHDVVLSLDGEG 651 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~~---g~TvI~ItH~l~~i~~~D~Il~l~~~g 651 (1064)
+++|+||||++||+.....+.+.+++. |.|+|+|||+.+.+..||+++++..++
T Consensus 179 ~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~~~ 235 (247)
T cd03275 179 PFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYRDQ 235 (247)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEecC
Confidence 999999999999999999988877653 789999999999999999999998653
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-22 Score=222.81 Aligned_cols=181 Identities=23% Similarity=0.285 Sum_probs=149.5
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
.+.+-+.||+|.||+.++++++++|-|.-..+++||||||.|||||+++|.|-++|+.|+.+-+- |-+||+.-|.
T Consensus 584 PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----rL~iG~FdQh 658 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----RLRIGWFDQH 658 (807)
T ss_pred CCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----eeeeechhhh
Confidence 45788999999999999999999999999999999999999999999999999999999987543 4579998887
Q ss_pred CC---CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCC
Q 001511 522 PY---TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598 (1064)
Q Consensus 522 p~---l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~ 598 (1064)
.. ....|-.|.+.-... ...++....|-.+||........ -..||||||-||++|-.-+..|+
T Consensus 659 ~~E~L~~Eetp~EyLqr~FN-------lpyq~ARK~LG~fGL~sHAHTik-------ikdLSGGQKaRValaeLal~~PD 724 (807)
T KOG0066|consen 659 ANEALNGEETPVEYLQRKFN-------LPYQEARKQLGTFGLASHAHTIK-------IKDLSGGQKARVALAELALGGPD 724 (807)
T ss_pred hHHhhccccCHHHHHHHhcC-------CChHHHHHHhhhhhhhhccceEe-------eeecCCcchHHHHHHHHhcCCCC
Confidence 53 123465665543211 34556777788888764332211 13699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhc
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFH 641 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~ 641 (1064)
+|||||||++||.++...+-+++.+.+-.||+||||..++...
T Consensus 725 vlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT 767 (807)
T KOG0066|consen 725 VLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVET 767 (807)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeec
Confidence 9999999999999999999999999989999999998877643
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-22 Score=231.95 Aligned_cols=220 Identities=19% Similarity=0.264 Sum_probs=148.7
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecC
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~ 521 (1064)
...+.++|+++.|. +.++++|++|++.+|+.+||+|+|||||||++++|.|-..|..-++.+ ..+.++
T Consensus 73 s~dvk~~sls~s~~-g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~-----------y~ls~e 140 (614)
T KOG0927|consen 73 SRDVKIESLSLSFH-GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF-----------YLLSRE 140 (614)
T ss_pred cccceeeeeeeccC-CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch-----------hhhccc
Confidence 35699999999985 678999999999999999999999999999999999988885554432 122221
Q ss_pred CCCCcc-cHHHHh----------cCCCCC-C---CcCCCCCHHHHHHHHHhcCChhHHhc-------CCC--CcccCCCC
Q 001511 522 PYTAVG-TLRDQL----------IYPLTS-D---QEVEPLTHGGMVELLKNVDLEYLLDR-------YPP--EKEINWGD 577 (1064)
Q Consensus 522 p~l~~~-Ti~eni----------~~~~~~-~---~~~~~~~~~~i~~~l~~~~L~~~~~~-------~p~--~~~~~~g~ 577 (1064)
-.-... ++..-+ .+-... . +......-..+.+-+..++.+.+-.+ +.. .....|..
T Consensus 141 ~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~ 220 (614)
T KOG0927|consen 141 IEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVK 220 (614)
T ss_pred CCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhh
Confidence 110001 111111 100000 0 00000111122333333333322111 000 00112456
Q ss_pred CcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCc-EEEEEccChhHHH-hcCEEEEEeCCCceEE
Q 001511 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT-SCITISHRPALVA-FHDVVLSLDGEGEWRV 655 (1064)
Q Consensus 578 ~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~-TvI~ItH~l~~i~-~~D~Il~l~~~g~~~~ 655 (1064)
.||||||.|+++||+|+.+|++|+|||||++||.++..++-+.|.+... ++++++|.-.++. .|.+|+.++++. ..-
T Consensus 221 ~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kk-l~~ 299 (614)
T KOG0927|consen 221 DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKK-LIY 299 (614)
T ss_pred ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccc-eee
Confidence 8999999999999999999999999999999999999999999999877 8999999999885 699999999765 334
Q ss_pred eecCCCccccccccccccc
Q 001511 656 HDKRDGSSVVTKSGINMIK 674 (1064)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~ 674 (1064)
.+++++.++..+++..+.+
T Consensus 300 y~Gnydqy~~tr~E~~~~q 318 (614)
T KOG0927|consen 300 YEGNYDQYVKTRSELEENQ 318 (614)
T ss_pred ecCCHHHHhhHHHHHhHHH
Confidence 5677777777666544433
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-21 Score=245.30 Aligned_cols=73 Identities=23% Similarity=0.353 Sum_probs=67.7
Q ss_pred CCcChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeC
Q 001511 577 DELSLGEQQRLGMARLFYHKP---KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P---~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
.+||||||||++|||+|+++| +++||||||++||+.....+.+.+++ .|.|+|+|||+++.+..+|+|++|..
T Consensus 829 ~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp 907 (943)
T PRK00349 829 TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGP 907 (943)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecC
Confidence 589999999999999999999 99999999999999999998887654 48999999999999999999999953
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-21 Score=253.50 Aligned_cols=191 Identities=26% Similarity=0.297 Sum_probs=134.8
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHH---------HhcccCCCC---------------
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFR---------VLGGLWPLV--------------- 498 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~---------lL~Gl~~p~--------------- 498 (1064)
+.++++|++. ..|+|+||+|++||+++|+|+||||||||++ .+.|..++.
T Consensus 599 ~~L~l~~~~~------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 599 GTLTLSKATK------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred CeEEEecccc------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 3578888763 3699999999999999999999999999999 566643321
Q ss_pred ---------ccEEEeCCCCcccc--------------ccEEEEecC------------------C--C------------
Q 001511 499 ---------SGHIAKPGVGSDLN--------------KEIFYVPQR------------------P--Y------------ 523 (1064)
Q Consensus 499 ---------~G~I~i~g~~~~lr--------------~~i~~v~Q~------------------p--~------------ 523 (1064)
++.+.+-|.-+++| ....|.||. | +
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 11122111000111 112233332 1 0
Q ss_pred ------CC-cccHHHHhcCCCCCCCc---CCCCCHHHHHHHHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHHHHH
Q 001511 524 ------TA-VGTLRDQLIYPLTSDQE---VEPLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGMARL 592 (1064)
Q Consensus 524 ------l~-~~Ti~eni~~~~~~~~~---~~~~~~~~i~~~l~~~~L~~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARA 592 (1064)
.+ ..||.|++.++...... ..+...+++ ++++.+|+.++ .++.+ .+||||||||++||||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~--------~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL--------SSLSGGEIQRLKLAYE 823 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc--------ccCCHHHHHHHHHHHH
Confidence 11 23778887765332100 011122334 57888899876 56655 4899999999999999
Q ss_pred Hc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEe
Q 001511 593 FY---HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 593 L~---~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1064)
|+ .+|+++||||||++||+...+.+.+.+++ .|.|+|+|||+++.++.+|++++|.
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~ 885 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELG 885 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEc
Confidence 98 69999999999999999999998887754 5899999999999999999999995
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=211.88 Aligned_cols=173 Identities=25% Similarity=0.360 Sum_probs=135.2
Q ss_pred eeeeceEEE-----eCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCC-CCcccHHHHh
Q 001511 460 LVENLTLKV-----EPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY-TAVGTLRDQL 533 (1064)
Q Consensus 460 ~L~~vsl~i-----~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~-l~~~Ti~eni 533 (1064)
.+.++.|++ ..||+++++||||-||||+.++|+|.++|++|. ..+ -+++|=||--. -+.+||.+-+
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~~------~~vSyKPQyI~~~~~gtV~~~l 422 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EED------LKVSYKPQYISPDYDGTVEDLL 422 (591)
T ss_pred ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC--Ccc------ceEeecceeecCCCCCcHHHHH
Confidence 344555554 567889999999999999999999999999998 111 26889898532 3678999877
Q ss_pred cCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 001511 534 IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613 (1064)
Q Consensus 534 ~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~ 613 (1064)
.-...... .+.---.++++-++|++.+++.. .+|||||.||||||-||.+++|+.+||||++.||.+.
T Consensus 423 ~~~~~~~~----~~s~~~~ei~~pl~l~~i~e~~v--------~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEq 490 (591)
T COG1245 423 RSAIRSAF----GSSYFKTEIVKPLNLEDLLERPV--------DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQ 490 (591)
T ss_pred HHhhhhhc----ccchhHHhhcCccchHHHHhccc--------ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHH
Confidence 64332210 11112346788889998888754 3799999999999999999999999999999999987
Q ss_pred HHHHHHHH----HhcCcEEEEEccChhHHHh-cCEEEEEeCCCc
Q 001511 614 EERFCAKV----RAMGTSCITISHRPALVAF-HDVVLSLDGEGE 652 (1064)
Q Consensus 614 ~~~l~~~l----~~~g~TvI~ItH~l~~i~~-~D~Il~l~~~g~ 652 (1064)
+-.+-+.+ .+.++|.++|-||+-.+.+ +|+++++++..+
T Consensus 491 R~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg 534 (591)
T COG1245 491 RIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPG 534 (591)
T ss_pred HHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEecCCC
Confidence 76554444 4468999999999998875 899999998643
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-21 Score=216.84 Aligned_cols=192 Identities=19% Similarity=0.243 Sum_probs=160.5
Q ss_pred CCcEEEEeeEEEcCCCC-eeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEec
Q 001511 442 ANYIEFSGVKVVTPTGN-VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~-~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q 520 (1064)
.+.+++.+|+|.|+.+. +.+.++++.++.-+++++||+||+||||++|++.|-..|..|.+.+.+ |.+|+|-+|
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----r~ri~~f~Q 434 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----RLRIKYFAQ 434 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----cceecchhH
Confidence 56899999999997766 799999999999999999999999999999999999999999998776 568999999
Q ss_pred CCCCC-cccH--HHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC
Q 001511 521 RPYTA-VGTL--RDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597 (1064)
Q Consensus 521 ~p~l~-~~Ti--~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P 597 (1064)
...-+ ...+ .|-..-.. +...++++.+.|..+|++.-+...+. ..||||||=||++|.+...+|
T Consensus 435 hhvd~l~~~v~~vd~~~~~~------pG~~~ee~r~hl~~~Gl~g~la~~si-------~~LSGGQKsrvafA~~~~~~P 501 (582)
T KOG0062|consen 435 HHVDFLDKNVNAVDFMEKSF------PGKTEEEIRRHLGSFGLSGELALQSI-------ASLSGGQKSRVAFAACTWNNP 501 (582)
T ss_pred hhhhHHHHHhHHHHHHHHhC------CCCCHHHHHHHHHhcCCCchhhhccc-------cccCCcchhHHHHHHHhcCCC
Confidence 75322 2122 11111111 11378899999999999754433332 379999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCC
Q 001511 598 KFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEG 651 (1064)
Q Consensus 598 ~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g 651 (1064)
.+|+|||||+.||.++...+-++++..+-.||+||||.+++. .|+.+++.+++.
T Consensus 502 hlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~ 556 (582)
T KOG0062|consen 502 HLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGK 556 (582)
T ss_pred cEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCc
Confidence 999999999999999999999999999889999999999997 589999998764
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=199.76 Aligned_cols=162 Identities=17% Similarity=0.078 Sum_probs=115.1
Q ss_pred eeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccEEEEecCCCCCcccHHHHh
Q 001511 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIFYVPQRPYTAVGTLRDQL 533 (1064)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i~~v~Q~p~l~~~Ti~eni 533 (1064)
++++++++.+| +.+|+||||||||||+.+|.-......+ ....|.. ..-...|.+.+|+...+. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 46778888887 7799999999999999998744322211 0001210 111346888888765443 1
Q ss_pred cCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH----ccCCCEEEEeCCCCCC
Q 001511 534 IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF----YHKPKFAILDECTSAV 609 (1064)
Q Consensus 534 ~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL----~~~P~iliLDEPTSaL 609 (1064)
.. .....+++.++++. .+..++.+ .+||+|||||++||+|+ +.+|+++||||||++|
T Consensus 84 ----~~----~~~~~~~~~~~l~~---~~~~~~~~--------~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~gl 144 (198)
T cd03276 84 ----PL----CVLSQDMARSFLTS---NKAAVRDV--------KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFM 144 (198)
T ss_pred ----cC----CHHHHHHHHHHhcc---ccccCCcc--------cccChhHHHHHHHHHHHHHhcccCCCEEEecCccccc
Confidence 10 11123456666655 33333333 48999999999999999 6899999999999999
Q ss_pred CHHHHHHHHHHHHhc------CcEEEEEccChhHHHhcCEEEEEeC
Q 001511 610 TTDMEERFCAKVRAM------GTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 610 D~~~~~~l~~~l~~~------g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
|......+.+.+++. +.|+|++||+++.+...|+|-++..
T Consensus 145 D~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~ 190 (198)
T cd03276 145 DMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRM 190 (198)
T ss_pred CHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEe
Confidence 999998888766541 3589999999999988899999964
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-19 Score=207.50 Aligned_cols=202 Identities=22% Similarity=0.263 Sum_probs=159.2
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc--------cccc
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS--------DLNK 513 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~--------~lr~ 513 (1064)
...++++|+++.-..+.+.++||||+|.+||++||.|-.|-|-+-|+.+|+|+.+|.+|+|.++|.+. ..+.
T Consensus 255 ~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 255 EVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred CeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 45799999999755556899999999999999999999999999999999999999999999999652 1235
Q ss_pred cEEEEecCCC----CCcccHHHHhcCCCCCCC---cCCCCCH----HHHHHHHHhcCChhHHhcCCCCcccCCCCCcChH
Q 001511 514 EIFYVPQRPY----TAVGTLRDQLIYPLTSDQ---EVEPLTH----GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLG 582 (1064)
Q Consensus 514 ~i~~v~Q~p~----l~~~Ti~eni~~~~~~~~---~~~~~~~----~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGG 582 (1064)
.++|||.|.. .+..|+.||+........ ...-... +...++.+.+++.. .-| .....+||||
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~---~~~----~~~a~~LSGG 407 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA---PSP----DAPARSLSGG 407 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC---CCC----CcchhhcCCc
Confidence 7999999984 456799999986543211 0001122 23344445544431 111 0123589999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
.+||+-+||-|.++|++||+.+||-|||....+.+.+.+. +.|+.|++||-+++.+ ..+|+|.||.++
T Consensus 408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~G 479 (501)
T COG3845 408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEG 479 (501)
T ss_pred ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCC
Confidence 9999999999999999999999999999999999988764 3599999999999876 579999999875
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-20 Score=230.15 Aligned_cols=72 Identities=25% Similarity=0.372 Sum_probs=66.8
Q ss_pred CCcChHHHHHHHHHHHHcc---CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEe
Q 001511 577 DELSLGEQQRLGMARLFYH---KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~---~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1064)
.+|||||+||++|||+|+. +|+++||||||++||+.....+.+.+++ .|.|+|+|+|++..+..+|+|++|.
T Consensus 827 ~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lg 904 (924)
T TIGR00630 827 TTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLG 904 (924)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEec
Confidence 5899999999999999997 5999999999999999999998887754 4899999999999999999999995
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.1e-18 Score=172.24 Aligned_cols=187 Identities=18% Similarity=0.265 Sum_probs=137.5
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc------------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS------------ 509 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~------------ 509 (1064)
...|++.++.|.|+...|++-|+|++++.|.+..+||.||||||||+|+|+|-.-...|.|.+.|.+.
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 45799999999999888999999999999999999999999999999999998877789999998641
Q ss_pred -----cccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhc--CC--CCcccCC-CCCc
Q 001511 510 -----DLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR--YP--PEKEINW-GDEL 579 (1064)
Q Consensus 510 -----~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~--~p--~~~~~~~-g~~L 579 (1064)
++++..++--.-|.-...++ .+++.-++-.++..+ +. .|.+..| -..+
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sa----------------------e~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkv 148 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISA----------------------EHMIFGVGGDDPERREKLIDILDIDLRWRMHKV 148 (291)
T ss_pred eEecccccccccccccccccccccH----------------------HHHHhhccCCChhHhhhhhhheeccceEEEeec
Confidence 11222222111111111122 223333333222111 00 1222333 3479
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEccChhHH-HhcCEEEEEeCC
Q 001511 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA----MGTSCITISHRPALV-AFHDVVLSLDGE 650 (1064)
Q Consensus 580 SGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~----~g~TvI~ItH~l~~i-~~~D~Il~l~~~ 650 (1064)
|-|||+||.|+.-|++.=++|+|||.|--||...+..+++.+++ +|.||+..||-..-+ .-..+++.+.++
T Consensus 149 SDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~G 224 (291)
T KOG2355|consen 149 SDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSG 224 (291)
T ss_pred cccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCC
Confidence 99999999999999999999999999999999999999988764 599999999976644 357778888754
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-18 Score=182.68 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=99.8
Q ss_pred eeeeceEEEeCCC-EEEEEcCCCCchhHHHHHhc--------ccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHH
Q 001511 460 LVENLTLKVEPGS-NLLITGPNGSGKSSLFRVLG--------GLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLR 530 (1064)
Q Consensus 460 ~L~~vsl~i~~Ge-~vaIvG~sGsGKSTLl~lL~--------Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~ 530 (1064)
.+.++||++.+|+ +++|+||||||||||+|.|. |.+-|....+ .++|+.|.-.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------~~~~~~~~~~------- 77 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------SLPVFENIFA------- 77 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------cCcCccEEEE-------
Confidence 3567999999996 69999999999999999998 5444432211 1233333210
Q ss_pred HHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 001511 531 DQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610 (1064)
Q Consensus 531 eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD 610 (1064)
..+..+.++.. -..+|+||||+..|++++ .+|+++++||||+++|
T Consensus 78 --------------------------~lg~~~~l~~~--------~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD 122 (200)
T cd03280 78 --------------------------DIGDEQSIEQS--------LSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTD 122 (200)
T ss_pred --------------------------ecCchhhhhcC--------cchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCC
Confidence 01111111111 137999999999999884 8999999999999999
Q ss_pred HHHHHHHHH----HHHhcCcEEEEEccChhHHHhcCEEEEEeC
Q 001511 611 TDMEERFCA----KVRAMGTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 611 ~~~~~~l~~----~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
+.....+.. .+.+.|.|+|++||+.+....+|+++.+++
T Consensus 123 ~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~ 165 (200)
T cd03280 123 PVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVEN 165 (200)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEE
Confidence 998877643 234458999999999888888999999975
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=173.33 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=65.8
Q ss_pred cChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 579 LSLGEQQRLGMARLFY----HKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 579 LSGGqrQRlaIARAL~----~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
||||||||++|||+++ .+|+++|+||||++||+.....+.+.+++ .|.|+|+|||+++.+..+|+++.++..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~~ 173 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLFV 173 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEEe
Confidence 9999999999999995 79999999999999999999988887754 368999999999999999999999863
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-17 Score=183.88 Aligned_cols=172 Identities=25% Similarity=0.392 Sum_probs=133.5
Q ss_pred eeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhccc--------CCCCccEEEeCCCCccccccEEEEecC--CCCCccc
Q 001511 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--------WPLVSGHIAKPGVGSDLNKEIFYVPQR--PYTAVGT 528 (1064)
Q Consensus 459 ~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl--------~~p~~G~I~i~g~~~~lr~~i~~v~Q~--p~l~~~T 528 (1064)
.+++|+||++++|+.++|+|+||+||||++++|+|. |.|++|.|.++-.. --+++|-+ |.+-..|
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-----~~a~iPge~Ep~f~~~t 471 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-----VSALIPGEYEPEFGEVT 471 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-----hhhccCcccccccCchh
Confidence 699999999999999999999999999999999986 57899999876421 23455543 3333347
Q ss_pred HHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 001511 529 LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607 (1064)
Q Consensus 529 i~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTS 607 (1064)
+-|++.--. -+.....++|..+|+.+- +-+.+. .+||-|||.|..||+++..+|.+++.||--|
T Consensus 472 ilehl~s~t--------GD~~~AveILnraGlsDAvlyRr~f-------~ELStGQKeR~KLAkllaerpn~~~iDEF~A 536 (593)
T COG2401 472 ILEHLRSKT--------GDLNAAVEILNRAGLSDAVLYRRKF-------SELSTGQKERAKLAKLLAERPNVLLIDEFAA 536 (593)
T ss_pred HHHHHhhcc--------CchhHHHHHHHhhccchhhhhhccH-------hhcCcchHHHHHHHHHHhcCCCcEEhhhhhh
Confidence 878775321 122346689999999753 222222 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHH----HHHhcCcEEEEEccChhHHHh--cCEEEEEeCC
Q 001511 608 AVTTDMEERFCA----KVRAMGTSCITISHRPALVAF--HDVVLSLDGE 650 (1064)
Q Consensus 608 aLD~~~~~~l~~----~l~~~g~TvI~ItH~l~~i~~--~D~Il~l~~~ 650 (1064)
.||+.+...+.+ +.++.|.|+++||||.+.... -|.++.+.-+
T Consensus 537 hLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg 585 (593)
T COG2401 537 HLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYG 585 (593)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecc
Confidence 999998877654 445679999999999998864 5887777543
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-17 Score=185.10 Aligned_cols=87 Identities=21% Similarity=0.255 Sum_probs=72.3
Q ss_pred HhcCCCCcccCCCCCcChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhH
Q 001511 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYH----KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPAL 637 (1064)
Q Consensus 564 ~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~----~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~ 637 (1064)
.+..|.+....+...|||||+||+++|++++. +|+++|+||||++||+.....+.+.+++. +.|+|+|||++..
T Consensus 156 ~~~~p~e~~~~~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~ 235 (276)
T cd03241 156 FSTNPGEPLKPLAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQV 235 (276)
T ss_pred eecCCCCccchhhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHH
Confidence 34445433333445799999999999997654 99999999999999999999999888753 7899999999998
Q ss_pred HHhcCEEEEEeCC
Q 001511 638 VAFHDVVLSLDGE 650 (1064)
Q Consensus 638 i~~~D~Il~l~~~ 650 (1064)
...+|+++.++++
T Consensus 236 ~~~~d~~~~l~~~ 248 (276)
T cd03241 236 AAMADNHFLVEKE 248 (276)
T ss_pred HHhcCcEEEEEEe
Confidence 8899999999764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.9e-18 Score=189.63 Aligned_cols=166 Identities=29% Similarity=0.393 Sum_probs=125.8
Q ss_pred EeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeC-CCC--------------------cccc--ccEEEEecCCCC
Q 001511 468 VEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP-GVG--------------------SDLN--KEIFYVPQRPYT 524 (1064)
Q Consensus 468 i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~-g~~--------------------~~lr--~~i~~v~Q~p~l 524 (1064)
.++|+.+||+|+||-||||-+|+|+|.+.|.=|+-.-+ +.+ .++| .++.||--=|-.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 57899999999999999999999999999987764321 100 0111 123333323444
Q ss_pred CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeC
Q 001511 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1064)
Q Consensus 525 ~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDE 604 (1064)
..|+++|-+.-... .....++.+.++|...+++-. .+|||||-||+|||-|+++++++.++||
T Consensus 177 ~KG~v~elLk~~de---------~g~~devve~l~L~nvl~r~v--------~~LSGGELQr~aIaa~l~rdADvY~FDE 239 (591)
T COG1245 177 VKGKVGELLKKVDE---------RGKFDEVVERLGLENVLDRDV--------SELSGGELQRVAIAAALLRDADVYFFDE 239 (591)
T ss_pred hcchHHHHHHhhhh---------cCcHHHHHHHhcchhhhhhhh--------hhcCchHHHHHHHHHHHhccCCEEEEcC
Confidence 56788887653211 124567888889988888754 4899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh-cCEEEEEeCC
Q 001511 605 CTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSLDGE 650 (1064)
Q Consensus 605 PTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~-~D~Il~l~~~ 650 (1064)
|||-||...+-..-+.+++ .++++|+|.||+..+.. +|.|.++-++
T Consensus 240 psSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG~ 289 (591)
T COG1245 240 PSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYGE 289 (591)
T ss_pred CcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEecC
Confidence 9999999877665555443 37999999999999874 8999888775
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=170.97 Aligned_cols=174 Identities=20% Similarity=0.175 Sum_probs=100.3
Q ss_pred eeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEE---------EeCCCCccccccEEEEecCCCCCcccHHH
Q 001511 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---------AKPGVGSDLNKEIFYVPQRPYTAVGTLRD 531 (1064)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I---------~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~e 531 (1064)
++++.+++.+| ..+|+||||||||||+.+|.-..-...... .-.|.+ ...|-..++...- .=..+
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~---~~~v~~~~~~~~~--~~~~~ 87 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCD---EGTIEIELYGNPG--NIQVD 87 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCC---cEEEEEEEEeCCC--ccccC
Confidence 35566666555 668999999999999999866552211110 011110 1122222222110 00112
Q ss_pred HhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcc--cCCCCCcChHHHHHHHHHHHH----ccCCCEEEEeCC
Q 001511 532 QLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE--INWGDELSLGEQQRLGMARLF----YHKPKFAILDEC 605 (1064)
Q Consensus 532 ni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~--~~~g~~LSGGqrQRlaIARAL----~~~P~iliLDEP 605 (1064)
|+++.. ..+++.++..... .+.+.+++.+.+ .....+||||||||+.+|+++ +.+|+++|+|||
T Consensus 88 n~~~~~---------~q~~~~~~~~~~~-~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP 157 (213)
T cd03277 88 NLCQFL---------PQDRVGEFAKLSP-IELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEI 157 (213)
T ss_pred CceEEE---------chHHHHHHHhCCh-HhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecc
Confidence 222211 1222222222211 123333332221 123458999999999877554 589999999999
Q ss_pred CCCCCHHHHHHHHHHHHh---c-C-cEEEEEccChhHH-HhcC--EEEEEeCC
Q 001511 606 TSAVTTDMEERFCAKVRA---M-G-TSCITISHRPALV-AFHD--VVLSLDGE 650 (1064)
Q Consensus 606 TSaLD~~~~~~l~~~l~~---~-g-~TvI~ItH~l~~i-~~~D--~Il~l~~~ 650 (1064)
|++||+.+...+.+.+.+ . | .|+|++||++... ..+| +|+++.++
T Consensus 158 ~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g 210 (213)
T cd03277 158 NQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNG 210 (213)
T ss_pred cccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecC
Confidence 999999999998887643 3 4 5899999998544 4555 67777643
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.7e-17 Score=166.02 Aligned_cols=136 Identities=22% Similarity=0.270 Sum_probs=98.0
Q ss_pred eeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEE-EEecCCCCCcccHHHHhcCCCCCC
Q 001511 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF-YVPQRPYTAVGTLRDQLIYPLTSD 540 (1064)
Q Consensus 462 ~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~-~v~Q~p~l~~~Ti~eni~~~~~~~ 540 (1064)
...++.+.++..+.|+|||||||||+++.+....-..+|.+..... .+.+ ++++...
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~-----~~~g~~~~~~~~----------------- 69 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSG-----VKAGCIVAAVSA----------------- 69 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCc-----ccCCCcceeeEE-----------------
Confidence 3345555566799999999999999999987765555554432110 0000 0111000
Q ss_pred CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHH
Q 001511 541 QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH----KPKFAILDECTSAVTTDMEER 616 (1064)
Q Consensus 541 ~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~----~P~iliLDEPTSaLD~~~~~~ 616 (1064)
. . +-.. .+||+||+||+++||+|.. +|+++|+|||++++|+.....
T Consensus 70 ------~---~------------i~~~---------~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 70 ------E---L------------IFTR---------LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred ------E---E------------ehhe---------eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 0 0 0000 2599999999999999986 789999999999999999888
Q ss_pred HHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeC
Q 001511 617 FCAKVRA---MGTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 617 l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
+.+.+.+ .+.++|++||+++....+|+++.|+.
T Consensus 120 l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 120 LAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 7776543 26899999999999999999999974
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.7e-13 Score=144.02 Aligned_cols=217 Identities=17% Similarity=0.115 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 109 ALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYF 188 (1064)
Q Consensus 109 ~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~~~l~~~~f 188 (1064)
..+++.++...++...|.+.+.+++.+...+.+.........++ .++...+.....+...+...++..++..+++.+++
T Consensus 3 l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 3 LAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFL-LIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666788999999988655443311111111111 11111112222222233344555557778888999
Q ss_pred hhhhccccccccCC-CCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 001511 189 ENMAYYKISHVDGR-ITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRN 267 (1064)
Q Consensus 189 ~~~~~~~i~~~~~~-~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~~~~~~L~li~l~~~~l~~~i~~~ 267 (1064)
++..+.|.+++++. .++..+|+++|++.+.+.+...+...+..++.. +....++++.+|.+++++++..|+..++...
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~ 160 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISI-IFSLILLFFISWKLALILLIILPLLFLISFI 160 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchh-hhhhhcccccccccccccchhhhhhHhhhhh
Confidence 99999999998764 679999999999998888777666666555433 2334556678999999999888888888888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Q 001511 268 FSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVV 327 (1064)
Q Consensus 268 ~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~ 327 (1064)
+.++..+..++.++..++......+..+|+++||.|+.|+.+.+++++..++..+...+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 220 (275)
T PF00664_consen 161 FSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKY 220 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888888888888999999999999999999888877777666554443
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-16 Score=177.95 Aligned_cols=185 Identities=18% Similarity=0.274 Sum_probs=129.9
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhccc---CCCCccEEEeCCCCccccccEEEEec
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL---WPLVSGHIAKPGVGSDLNKEIFYVPQ 520 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl---~~p~~G~I~i~g~~~~lr~~i~~v~Q 520 (1064)
.|.++|.+++- .++.++.|-||.|-.|.++++|||||-|||||++-|+.- +||. = .+-++-|
T Consensus 264 DIKiEnF~ISA-~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn-I-------------DvLlCEQ 328 (807)
T KOG0066|consen 264 DIKIENFDISA-QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN-I-------------DVLLCEQ 328 (807)
T ss_pred cceeeeeeeec-ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC-C-------------ceEeeee
Confidence 47888888764 467899999999999999999999999999999998752 2332 1 2334444
Q ss_pred CCCCCcccHHHHh---------------------cCCCCCC------------CcCCCCCHHHHHHHHHhcCChhHHhcC
Q 001511 521 RPYTAVGTLRDQL---------------------IYPLTSD------------QEVEPLTHGGMVELLKNVDLEYLLDRY 567 (1064)
Q Consensus 521 ~p~l~~~Ti~eni---------------------~~~~~~~------------~~~~~~~~~~i~~~l~~~~L~~~~~~~ 567 (1064)
+...-..|.-+.+ ..+.... .......+.+...+|.-+|.+.-+...
T Consensus 329 Evvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~r 408 (807)
T KOG0066|consen 329 EVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQER 408 (807)
T ss_pred eeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcC
Confidence 4322211111111 1110000 000011223444455555555444433
Q ss_pred CCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH-hcCEEEE
Q 001511 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA-FHDVVLS 646 (1064)
Q Consensus 568 p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~ 646 (1064)
|- ..+|||.|.||++||||+.+|-+|.|||||++||....-++-..|..-.+|.++||||-+.+. .|..|+.
T Consensus 409 Pt-------~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIH 481 (807)
T KOG0066|consen 409 PT-------TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIH 481 (807)
T ss_pred Cc-------cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhh
Confidence 42 479999999999999999999999999999999999888888888877899999999999875 6888999
Q ss_pred EeCC
Q 001511 647 LDGE 650 (1064)
Q Consensus 647 l~~~ 650 (1064)
+|+.
T Consensus 482 LD~q 485 (807)
T KOG0066|consen 482 LDNQ 485 (807)
T ss_pred hhhh
Confidence 9875
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-16 Score=171.66 Aligned_cols=144 Identities=24% Similarity=0.239 Sum_probs=106.5
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEE-EEecCCCCCcccHHHHhcC
Q 001511 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF-YVPQRPYTAVGTLRDQLIY 535 (1064)
Q Consensus 457 ~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~-~v~Q~p~l~~~Ti~eni~~ 535 (1064)
++.+.+|++++..+|++++|+|||||||||+++.++-. . +-.++| +||.+... .
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------~-------~la~~g~~vpa~~~~----------~ 70 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------V-------LMAQIGCFVPCDSAD----------I 70 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------H-------HHHHhCCCcCcccEE----------E
Confidence 45789999999999999999999999999999998721 1 112334 55554311 0
Q ss_pred CCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH--ccCCCEEEEeCC---CCCCC
Q 001511 536 PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF--YHKPKFAILDEC---TSAVT 610 (1064)
Q Consensus 536 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL--~~~P~iliLDEP---TSaLD 610 (1064)
+ .+.++++.+++.+... ..+|.|++|+..+++++ +.+|+++||||| |+++|
T Consensus 71 ~-------------~~~~il~~~~l~d~~~-----------~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD 126 (222)
T cd03285 71 P-------------IVDCILARVGASDSQL-----------KGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD 126 (222)
T ss_pred e-------------ccceeEeeeccccchh-----------cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence 0 0112344445543321 36999999999999999 899999999999 99999
Q ss_pred HHHHHHH-HHHHHh-cCcEEEEEccChhHHHhcCEEEEEeC
Q 001511 611 TDMEERF-CAKVRA-MGTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 611 ~~~~~~l-~~~l~~-~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
+...... .+.+.+ .|.++|++||..+..+.+|++..+++
T Consensus 127 ~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~ 167 (222)
T cd03285 127 GFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKN 167 (222)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEE
Confidence 9877653 355554 58999999998777778998887764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=200.24 Aligned_cols=75 Identities=27% Similarity=0.511 Sum_probs=68.2
Q ss_pred CCcChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 577 DELSLGEQQRLGMARLFYHK---PKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~---P~iliLDEPTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
.+|||||.|||-||.-|..+ +.++||||||.||++...+.+++.++ +.|.|+|+|.|++..++.||.|+.|-.+
T Consensus 1698 ~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~ 1777 (1809)
T PRK00635 1698 SSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPG 1777 (1809)
T ss_pred CccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCC
Confidence 47999999999999999876 79999999999999999999888754 5699999999999999999999999765
Q ss_pred C
Q 001511 651 G 651 (1064)
Q Consensus 651 g 651 (1064)
|
T Consensus 1778 g 1778 (1809)
T PRK00635 1778 S 1778 (1809)
T ss_pred c
Confidence 3
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-15 Score=179.43 Aligned_cols=74 Identities=27% Similarity=0.381 Sum_probs=67.4
Q ss_pred CCcChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 577 DELSLGEQQRLGMARLFYHKP---KFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P---~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
.+|||||.|||-+|.-|.++. .+.||||||.||-.+-.+++++.+.+ .|-|||+|.|++..++.||+|+-|-.+
T Consensus 821 tTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPe 900 (935)
T COG0178 821 TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPE 900 (935)
T ss_pred ccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEEcCCC
Confidence 579999999999999999887 99999999999999888888776654 699999999999999999999999654
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-15 Score=190.59 Aligned_cols=190 Identities=21% Similarity=0.323 Sum_probs=149.0
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC---CccEEEeCCCC-cc--ccccEEEEecCCC-CCcccHH
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL---VSGHIAKPGVG-SD--LNKEIFYVPQRPY-TAVGTLR 530 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p---~~G~I~i~g~~-~~--lr~~i~~v~Q~p~-l~~~Ti~ 530 (1064)
..+|+|+|.-++||+.+.+.||.|||||||+++++|-.+- ..|+|.+||.+ ++ -++.++|++|+.. .+..||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4699999999999999999999999999999999998754 35799999986 11 2678999998764 5678999
Q ss_pred HHhcCCCCCCCc---CCCCCH-H----HHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEE
Q 001511 531 DQLIYPLTSDQE---VEPLTH-G----GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAIL 602 (1064)
Q Consensus 531 eni~~~~~~~~~---~~~~~~-~----~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliL 602 (1064)
|-+.|..+.... .++.++ + ..+.+++.+||++-.+....+ +-....|||||.||.+|-+++.+|++++.
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGn---d~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGN---DMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecc---cccccccCcccceeeeeeeeecCcceeee
Confidence 999875443211 111222 2 234678889998655544321 12346999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc----CcEEEEEccChh--HHHhcCEEEEEeCC
Q 001511 603 DECTSAVTTDMEERFCAKVRAM----GTSCITISHRPA--LVAFHDVVLSLDGE 650 (1064)
Q Consensus 603 DEPTSaLD~~~~~~l~~~l~~~----g~TvI~ItH~l~--~i~~~D~Il~l~~~ 650 (1064)
||+|.|||..+.-++.+.+++. +.|.++.=|..+ .....|.|++|.++
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG 338 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEG 338 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeecc
Confidence 9999999999999998888763 888888888765 45668999999865
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-15 Score=161.71 Aligned_cols=136 Identities=18% Similarity=0.198 Sum_probs=90.5
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCC-CcccHHHHhcCC
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYT-AVGTLRDQLIYP 536 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l-~~~Ti~eni~~~ 536 (1064)
+++++|++++. |++++|+||||||||||+|+|+|.... ...|.+ +. .-.+++|...+ +..|+.||+..+
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l-----~~~G~~--v~-a~~~~~q~~~l~~~~~~~d~l~~~ 83 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVIL-----AQAGAP--VC-ASSFELPPVKIFTSIRVSDDLRDG 83 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHH-----HHcCCE--Ee-cCccCcccceEEEeccchhccccc
Confidence 45778887765 799999999999999999999885531 112321 00 01366674333 346889998776
Q ss_pred CCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 001511 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEER 616 (1064)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~ 616 (1064)
.... ....+++.++++.+++ .+|+++|+||||+++|+.....
T Consensus 84 ~s~~----~~e~~~~~~iL~~~~~----------------------------------~~p~llllDEp~~glD~~~~~~ 125 (199)
T cd03283 84 ISYF----YAELRRLKEIVEKAKK----------------------------------GEPVLFLLDEIFKGTNSRERQA 125 (199)
T ss_pred cChH----HHHHHHHHHHHHhccC----------------------------------CCCeEEEEecccCCCCHHHHHH
Confidence 4321 0011233444433321 6999999999999999987765
Q ss_pred HH----HHHHhcCcEEEEEccChhHHHhc
Q 001511 617 FC----AKVRAMGTSCITISHRPALVAFH 641 (1064)
Q Consensus 617 l~----~~l~~~g~TvI~ItH~l~~i~~~ 641 (1064)
+. +.+.+.+.|+|++||+++.+...
T Consensus 126 l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 126 ASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 43 33445689999999999987643
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-15 Score=159.68 Aligned_cols=140 Identities=19% Similarity=0.214 Sum_probs=90.3
Q ss_pred eceEEEeCCCEEEEEcCCCCchhHHHHHhccc-CCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCC
Q 001511 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL-WPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQ 541 (1064)
Q Consensus 463 ~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl-~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~ 541 (1064)
..|+++.+|++++|+||||||||||+|+|++. +.+..|... +.. +..+++..| +....
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~-~~~----~~~i~~~dq------------i~~~~---- 79 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV-PAE----SASIPLVDR------------IFTRI---- 79 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc-ccc----ccccCCcCE------------EEEEe----
Confidence 34556668999999999999999999999943 323333221 110 112222211 11000
Q ss_pred cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH---
Q 001511 542 EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFC--- 618 (1064)
Q Consensus 542 ~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~--- 618 (1064)
+..+-+. .+-..+|++++| +..+.+++.+|+++|+||||+++|+.....+.
T Consensus 80 -----------------~~~d~i~--------~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~l 133 (202)
T cd03243 80 -----------------GAEDSIS--------DGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAV 133 (202)
T ss_pred -----------------cCccccc--------CCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHH
Confidence 0000000 111357777665 66667888999999999999999998776543
Q ss_pred -HHHHhcCcEEEEEccChhHHHhcCEEEEEeC
Q 001511 619 -AKVRAMGTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 619 -~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
+.+.+.+.++|++||+.+.+..++++..++.
T Consensus 134 l~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~ 165 (202)
T cd03243 134 LEHLLEKGCRTLFATHFHELADLPEQVPGVKN 165 (202)
T ss_pred HHHHHhcCCeEEEECChHHHHHHhhcCCCeEE
Confidence 3344568999999999999998887666653
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-14 Score=159.22 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=59.8
Q ss_pred CCcChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhc---CEE
Q 001511 577 DELSLGEQQRLGMARLFY---------HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFH---DVV 644 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~---------~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~---D~I 644 (1064)
..+|+||||+++|||+|+ .+|+++++||||++||+.....+.+.+++.+.++|+++|+......+ +++
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~~~~~~~~~~~i 261 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLADFDALWLRRAQI 261 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchhccchhccCccE
Confidence 358999999999999985 79999999999999999999999999987775555555554444444 678
Q ss_pred EEEeCC
Q 001511 645 LSLDGE 650 (1064)
Q Consensus 645 l~l~~~ 650 (1064)
+.++++
T Consensus 262 ~~l~~g 267 (270)
T cd03242 262 FRVDAG 267 (270)
T ss_pred EEEeCc
Confidence 888653
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-14 Score=150.76 Aligned_cols=137 Identities=17% Similarity=0.171 Sum_probs=94.9
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEE-EEecCCCCCcccHHHHhcC
Q 001511 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF-YVPQRPYTAVGTLRDQLIY 535 (1064)
Q Consensus 457 ~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~-~v~Q~p~l~~~Ti~eni~~ 535 (1064)
++.+.+|+++++++|++++|+|||||||||++|.++++.- ..++| +||-.. ...++.|+|..
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~---------------la~~G~~vpa~~--~~l~~~d~I~~ 77 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI---------------MAQIGCFVPAEY--ATLPIFNRLLS 77 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH---------------HHHcCCCcchhh--cCccChhheeE
Confidence 4578999999999999999999999999999999988641 11222 222211 12245555543
Q ss_pred CCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 001511 536 PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615 (1064)
Q Consensus 536 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~ 615 (1064)
.. +..+-.++ ..+.+|+|++|+ ..+-+++.+|+++|+|||++++|+....
T Consensus 78 ~~---------------------~~~d~~~~--------~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~ 127 (204)
T cd03282 78 RL---------------------SNDDSMER--------NLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGF 127 (204)
T ss_pred ec---------------------CCccccch--------hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHH
Confidence 21 11110011 114699999975 4556678999999999999999986533
Q ss_pred ----HHHHHHHhcCcEEEEEccChhHHHh
Q 001511 616 ----RFCAKVRAMGTSCITISHRPALVAF 640 (1064)
Q Consensus 616 ----~l~~~l~~~g~TvI~ItH~l~~i~~ 640 (1064)
.+.+.+.+.|.++|++||+.+.+..
T Consensus 128 ~l~~~il~~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 128 AISLAILECLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 3445555669999999999998764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=154.93 Aligned_cols=181 Identities=20% Similarity=0.309 Sum_probs=137.6
Q ss_pred EEcCCCCeeeeeceEEEeCCC-----EEEEEcCCCCchhHHHHHhcccCCCCccE-EEeCCCCccccccEEEEecCCC-C
Q 001511 452 VVTPTGNVLVENLTLKVEPGS-----NLLITGPNGSGKSSLFRVLGGLWPLVSGH-IAKPGVGSDLNKEIFYVPQRPY-T 524 (1064)
Q Consensus 452 ~~y~~~~~~L~~vsl~i~~Ge-----~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~-I~i~g~~~~lr~~i~~v~Q~p~-l 524 (1064)
+.||+-+..+.+..|.|+.|+ ++..+|+||.||||++++++|..+|++|. |-. -.++|=||.-. =
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~--------lnVSykpqkispK 414 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV--------LNVSYKPQKISPK 414 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc--------cceeccccccCcc
Confidence 457776778899999999885 68899999999999999999999998763 321 14788888643 3
Q ss_pred CcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeC
Q 001511 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604 (1064)
Q Consensus 525 ~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDE 604 (1064)
+.+|+|+-+.--.++. .....-+.+.++-+.+++.+++-. .+|||||+||+|+|-+|=+.+++.+.||
T Consensus 415 ~~~tvR~ll~~kIr~a----y~~pqF~~dvmkpL~ie~i~dqev--------q~lSggelQRval~KOGGKpAdvYliDE 482 (592)
T KOG0063|consen 415 REGTVRQLLHTKIRDA----YMHPQFVNDVMKPLQIENIIDQEV--------QGLSGGELQRVALALCLGKPADVYLIDE 482 (592)
T ss_pred ccchHHHHHHHHhHhh----hcCHHHHHhhhhhhhHHHHHhHHh--------hcCCchhhHHHHHHHhcCCCCceEEecC
Confidence 5678877553211111 122334556777777777776644 3799999999999999999999999999
Q ss_pred CCCCCCHHHHHH----HHHHHHhcCcEEEEEccChhHHH-hcCEEEEEeCCCc
Q 001511 605 CTSAVTTDMEER----FCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEGE 652 (1064)
Q Consensus 605 PTSaLD~~~~~~----l~~~l~~~g~TvI~ItH~l~~i~-~~D~Il~l~~~g~ 652 (1064)
|.+-||.+.+.. +.+.+-...+|-.+|.||.-..- .+||+++.++..+
T Consensus 483 psAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps 535 (592)
T KOG0063|consen 483 PSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPS 535 (592)
T ss_pred chhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcc
Confidence 999999887754 33344456899999999988775 4999999998654
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-13 Score=149.38 Aligned_cols=172 Identities=17% Similarity=0.153 Sum_probs=109.9
Q ss_pred EEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhc---CCCCCCCc
Q 001511 466 LKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLI---YPLTSDQE 542 (1064)
Q Consensus 466 l~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~---~~~~~~~~ 542 (1064)
+.+.+||+++|+||+|+|||||++.+.+..+...+++. .+.++-+++..-...+.+.+. .......
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~----------~~v~vI~er~~ev~el~~~I~~~~v~~~~~~- 79 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVY----------LIVLLIDERPEEVTDMQRSVKGEVIASTFDE- 79 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeE----------EEEEEccCCCccHHHHHHHhccEEEEecCCC-
Confidence 46889999999999999999999999998876533322 122334443221112222220 0000000
Q ss_pred CCCC---CHHHHHHHHH---hcCCh-----hHHhcCCCCcc---cCCCCCcChHH--------HHHHHHHHHHccCCCEE
Q 001511 543 VEPL---THGGMVELLK---NVDLE-----YLLDRYPPEKE---INWGDELSLGE--------QQRLGMARLFYHKPKFA 600 (1064)
Q Consensus 543 ~~~~---~~~~i~~~l~---~~~L~-----~~~~~~p~~~~---~~~g~~LSGGq--------rQRlaIARAL~~~P~il 600 (1064)
.... ....+.+.++ ..|-. |-+.+++.... ...|..+|||| +||+++||++.++++|.
T Consensus 80 ~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt 159 (249)
T cd01128 80 PPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLT 159 (249)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceE
Confidence 0000 0001111111 11211 22344443221 13578899999 99999999999999999
Q ss_pred EEeCCCCCCCHHHHH--HHHHHHHhcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 601 ILDECTSAVTTDMEE--RFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 601 iLDEPTSaLD~~~~~--~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
+| ||+.+|..++. -+.+.++..+.|.|++||+++...++|.|.+++.+
T Consensus 160 ~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~ 209 (249)
T cd01128 160 II--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSG 209 (249)
T ss_pred Ee--eeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCC
Confidence 99 99999965443 34566666789999999999999999999999865
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.5e-13 Score=170.11 Aligned_cols=87 Identities=28% Similarity=0.427 Sum_probs=74.8
Q ss_pred HHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHH---hcCcE
Q 001511 554 LLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP--KFAILDECTSAVTTDMEERFCAKVR---AMGTS 627 (1064)
Q Consensus 554 ~l~~~~L~~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P--~iliLDEPTSaLD~~~~~~l~~~l~---~~g~T 627 (1064)
.+..+||.++ .++.+ .+|||||+|||+|||||..+| +++||||||++||+.....+.+.++ +.|.|
T Consensus 470 ~L~~vgL~~l~l~r~~--------~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~T 541 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAA--------GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNT 541 (924)
T ss_pred hHhhccccccccCCCc--------CcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCE
Confidence 4566677654 44444 489999999999999999986 8999999999999999999887765 35899
Q ss_pred EEEEccChhHHHhcCEEEEEe
Q 001511 628 CITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 628 vI~ItH~l~~i~~~D~Il~l~ 648 (1064)
+|+|+||++.+..||+|++|.
T Consensus 542 VIvVeHd~~~i~~aD~vi~Lg 562 (924)
T TIGR00630 542 VIVVEHDEETIRAADYVIDIG 562 (924)
T ss_pred EEEEECCHHHHhhCCEEEEec
Confidence 999999999999999999994
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-13 Score=144.59 Aligned_cols=136 Identities=23% Similarity=0.231 Sum_probs=90.4
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-CccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCC
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP 536 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~ 536 (1064)
+.+.+|++++.++ ++++|+|||||||||++|.+++..-. ..|.. ++. -+..++++.|- ....++.|
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~-vp~----~~~~i~~~~~i--~~~~~~~~----- 84 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSF-VPA----SKAEIGVVDRI--FTRIGASD----- 84 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCe-ecc----ccceecceeeE--eccCCchh-----
Confidence 4688999999887 99999999999999999999874321 22221 111 12345555431 01112222
Q ss_pred CCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHH----HHHHHHH--ccCCCEEEEeCC---CC
Q 001511 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR----LGMARLF--YHKPKFAILDEC---TS 607 (1064)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQR----laIARAL--~~~P~iliLDEP---TS 607 (1064)
++|+||.+. ..+++++ +.+|+++||||| |+
T Consensus 85 -----------------------------------------~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~ 123 (216)
T cd03284 85 -----------------------------------------DLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTS 123 (216)
T ss_pred -----------------------------------------hhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence 344444432 3355555 469999999999 99
Q ss_pred CCCHHHH-HHHHHHHHhc-CcEEEEEccChhHHHhcCEEEEE
Q 001511 608 AVTTDME-ERFCAKVRAM-GTSCITISHRPALVAFHDVVLSL 647 (1064)
Q Consensus 608 aLD~~~~-~~l~~~l~~~-g~TvI~ItH~l~~i~~~D~Il~l 647 (1064)
++|.... ..+.+.+.+. +.|+|++||+.+....+|++..+
T Consensus 124 ~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v 165 (216)
T cd03284 124 TYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRV 165 (216)
T ss_pred hHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCCe
Confidence 9998653 4566766666 89999999998877777765444
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.6e-13 Score=170.29 Aligned_cols=88 Identities=25% Similarity=0.416 Sum_probs=76.1
Q ss_pred HHHHhcCChhH-HhcCCCCcccCCCCCcChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHH---hcCc
Q 001511 553 ELLKNVDLEYL-LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP--KFAILDECTSAVTTDMEERFCAKVR---AMGT 626 (1064)
Q Consensus 553 ~~l~~~~L~~~-~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P--~iliLDEPTSaLD~~~~~~l~~~l~---~~g~ 626 (1064)
+.++.+||.++ .++.+ .+|||||+|||+|||||..+| +++||||||++||+.....+.+.++ +.|.
T Consensus 471 ~~L~~vGL~~l~l~r~~--------~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~ 542 (943)
T PRK00349 471 KFLVDVGLDYLTLSRSA--------GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGN 542 (943)
T ss_pred HHhhccccCCCCCCCch--------hhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCC
Confidence 35677777655 45544 489999999999999999997 9999999999999999999887765 4589
Q ss_pred EEEEEccChhHHHhcCEEEEEe
Q 001511 627 SCITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 627 TvI~ItH~l~~i~~~D~Il~l~ 648 (1064)
|+|+|+||++.+..||+|++|.
T Consensus 543 TVIvVeH~~~~i~~aD~vi~Lg 564 (943)
T PRK00349 543 TLIVVEHDEDTIRAADYIVDIG 564 (943)
T ss_pred EEEEEeCCHHHHHhCCEEEEec
Confidence 9999999999999999999994
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.3e-13 Score=127.68 Aligned_cols=72 Identities=21% Similarity=0.133 Sum_probs=62.9
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC------ccccccEEEEecCCCCCcccHHH
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPYTAVGTLRD 531 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~------~~lr~~i~~v~Q~p~l~~~Ti~e 531 (1064)
.++|++++|++++||.++|+||||||||||++++. +|++.++|.+ .+.++.++++||+ +|.+||+|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 46899999999999999999999999999999986 7999999975 2345667788887 89999999
Q ss_pred HhcCCC
Q 001511 532 QLIYPL 537 (1064)
Q Consensus 532 ni~~~~ 537 (1064)
||.++.
T Consensus 74 Ni~~~~ 79 (107)
T cd00820 74 NIFLIT 79 (107)
T ss_pred hceeee
Confidence 999853
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-12 Score=143.17 Aligned_cols=126 Identities=21% Similarity=0.284 Sum_probs=83.4
Q ss_pred CEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC-------ccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCC
Q 001511 472 SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE 544 (1064)
Q Consensus 472 e~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~-------~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~ 544 (1064)
..++|+||||||||||+++|+|+++|++|+|.++|.+ .++...++++||+......++.||
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~------------ 179 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG------------ 179 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccccccc------------
Confidence 6889999999999999999999999999999999954 122233445555432111111111
Q ss_pred CCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc
Q 001511 545 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM 624 (1064)
Q Consensus 545 ~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~ 624 (1064)
.| . ..|+ ..++|+ .+|+++|+|||++. +....+.+.+. .
T Consensus 180 ----------------------~~---------k-~~~~---~~~i~~--~~P~villDE~~~~---e~~~~l~~~~~-~ 218 (270)
T TIGR02858 180 ----------------------CP---------K-AEGM---MMLIRS--MSPDVIVVDEIGRE---EDVEALLEALH-A 218 (270)
T ss_pred ----------------------ch---------H-HHHH---HHHHHh--CCCCEEEEeCCCcH---HHHHHHHHHHh-C
Confidence 01 0 1121 233333 69999999999852 33344444443 5
Q ss_pred CcEEEEEccChhH--H------------HhcCEEEEEeCC
Q 001511 625 GTSCITISHRPAL--V------------AFHDVVLSLDGE 650 (1064)
Q Consensus 625 g~TvI~ItH~l~~--i------------~~~D~Il~l~~~ 650 (1064)
|.|+|++||+.+. + ..+|++++|+++
T Consensus 219 G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~ 258 (270)
T TIGR02858 219 GVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRR 258 (270)
T ss_pred CCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecC
Confidence 9999999997665 3 347999999864
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.2e-12 Score=137.43 Aligned_cols=172 Identities=24% Similarity=0.329 Sum_probs=100.1
Q ss_pred eeceEEEeCCCEEEEEcCCCCchhHHHHHh-cccC--CCCccE-------EEeCCCC-ccccccEEEEecCCCCC----c
Q 001511 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVL-GGLW--PLVSGH-------IAKPGVG-SDLNKEIFYVPQRPYTA----V 526 (1064)
Q Consensus 462 ~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL-~Gl~--~p~~G~-------I~i~g~~-~~lr~~i~~v~Q~p~l~----~ 526 (1064)
++..+.+.+ ..+.|+|||||||||++.+| ..|- +..+.+ |...+.. ......|...++++... .
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 455556654 59999999999999999999 2332 221111 1110100 11123355555444211 0
Q ss_pred c--cHHHHhcCCCC-CCC-cCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHH----ccCCC
Q 001511 527 G--TLRDQLIYPLT-SDQ-EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF----YHKPK 598 (1064)
Q Consensus 527 ~--Ti~eni~~~~~-~~~-~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL----~~~P~ 598 (1064)
. .+...+.-... ... .......+++.+.+....+.. ..||||||-+++||-.| +.+++
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~--------------~~lSgGEk~~~~Lal~lA~~~~~~~p 160 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISP--------------EFLSGGEKSLVALALLLALQRYKPSP 160 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTT--------------TGS-HHHHHHHHHHHHHHHHTCS--S
T ss_pred cccccccccccccccccccccccccccccccccccccccc--------------cccccccccccccccccccccccccc
Confidence 0 11111110000 000 001134455666666555432 16999999999999665 46789
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEe
Q 001511 599 FAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 599 iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1064)
++|||||.++||......+.+.+++. +.-+|++||+......+|+.+.+.
T Consensus 161 ~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 161 FLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp EEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999875 488999999999999999988775
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.7e-12 Score=157.00 Aligned_cols=144 Identities=18% Similarity=0.221 Sum_probs=97.7
Q ss_pred cEEEEeeEEEcCCCCeeeee-----ceEEEeCC-CEEEEEcCCCCchhHHHHHhccc-CCCCccEEEeCCCCccccccEE
Q 001511 444 YIEFSGVKVVTPTGNVLVEN-----LTLKVEPG-SNLLITGPNGSGKSSLFRVLGGL-WPLVSGHIAKPGVGSDLNKEIF 516 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~-----vsl~i~~G-e~vaIvG~sGsGKSTLl~lL~Gl-~~p~~G~I~i~g~~~~lr~~i~ 516 (1064)
.+.++++.. |++++ +|+++.+| ++++|+||||+|||||+|+++|. +.+..|.
T Consensus 295 ~i~l~~~rh------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~--------------- 353 (771)
T TIGR01069 295 KIILENARH------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI--------------- 353 (771)
T ss_pred CEEEccccC------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---------------
Confidence 567776653 44443 78889888 89999999999999999999997 4555552
Q ss_pred EEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccC
Q 001511 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHK 596 (1064)
Q Consensus 517 ~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~ 596 (1064)
+||...... ..+.+++.... .+ .+-+... .+++|+|++|+..|++++ .+
T Consensus 354 ~Vpa~~~~~-~~~~d~i~~~i---------~~------------~~si~~~--------LStfS~~m~~~~~il~~~-~~ 402 (771)
T TIGR01069 354 PIPANEHSE-IPYFEEIFADI---------GD------------EQSIEQN--------LSTFSGHMKNISAILSKT-TE 402 (771)
T ss_pred CccCCcccc-ccchhheeeec---------Ch------------HhHHhhh--------hhHHHHHHHHHHHHHHhc-CC
Confidence 333332100 01122221100 00 0001111 137999999999999887 78
Q ss_pred CCEEEEeCCCCCCCHHHHHHHH----HHHHhcCcEEEEEccChhHHH
Q 001511 597 PKFAILDECTSAVTTDMEERFC----AKVRAMGTSCITISHRPALVA 639 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~----~~l~~~g~TvI~ItH~l~~i~ 639 (1064)
|+++|+|||++|+|+.....+. +.+.+.|.++|++||+.++..
T Consensus 403 ~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 403 NSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred CcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 9999999999999998877663 334456999999999988654
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-12 Score=137.84 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=48.4
Q ss_pred CCcChHHHHHHHHHHHHcc--CCCEEEEeCCCCCCCHHHHHHHH----HHHHh-cCcEEEEEccChhHHHhcCE
Q 001511 577 DELSLGEQQRLGMARLFYH--KPKFAILDECTSAVTTDMEERFC----AKVRA-MGTSCITISHRPALVAFHDV 643 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~--~P~iliLDEPTSaLD~~~~~~l~----~~l~~-~g~TvI~ItH~l~~i~~~D~ 643 (1064)
+++|+|++| +++++.. +|+++|+|||++++|+.....+. +.+.+ .+.++|++||+.+..+.+|.
T Consensus 60 s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 60 STFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred cHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 368888887 4455544 99999999999999998665543 33344 38899999999987776653
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-11 Score=139.75 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=63.1
Q ss_pred CCcChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHh---cCEE
Q 001511 577 DELSLGEQQRLGMARLFY---------HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAF---HDVV 644 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~---------~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~---~D~I 644 (1064)
..+|.||||+++||++|+ .+|++++||||+++||+..+..+.+.+.+.+..++++||+...+.. .+++
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~~~~~~~~~i 351 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDLADLLENAKI 351 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhhhhhhccCcE
Confidence 469999999999999985 7999999999999999999999999987766789999998765532 3577
Q ss_pred EEEeCC
Q 001511 645 LSLDGE 650 (1064)
Q Consensus 645 l~l~~~ 650 (1064)
+.++++
T Consensus 352 ~~v~~G 357 (361)
T PRK00064 352 FHVEQG 357 (361)
T ss_pred EEEeCC
Confidence 777653
|
|
| >PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-08 Score=113.38 Aligned_cols=279 Identities=13% Similarity=0.222 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 108 LALVGIVVLRTALSNRLAKVQGFLFRAAFLR-------RVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLQFRKIVT 180 (1064)
Q Consensus 108 l~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~-------~~~~~~~~l~~~~~l~~~~~~~~~~~~yl~~~l~~~~r~~L~ 180 (1064)
+.++.+....+-+++.++.|.+.|+|.++.. ....|+..+..++.+.++..++..+..|+.....-+||..++
T Consensus 13 ~~il~~~~~~v~v~V~iN~W~~~Fyd~iQ~al~~~~~~t~~ef~~~~~~f~~ia~~~v~~~v~~~ff~shyiFrWR~Am~ 92 (315)
T PF05992_consen 13 ALILFVTWFQVQVSVAINEWYGPFYDLIQKALSKPGSVTIDEFYAQILNFLWIAMIYVVLAVLNSFFVSHYIFRWRTAMN 92 (315)
T ss_pred HHHHHHHHHHHheeeeehHhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444556666677778999999999988765 234566666555555555555666778889889999999999
Q ss_pred HHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhhhH
Q 001511 181 KLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRLCS----------YASPKY 250 (1064)
Q Consensus 181 ~~l~~~~f~~~~~~~i~~~~~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l~~----------~~~~~L 250 (1064)
+...+.| +++ +.+....||+.+|+.++++.+..+...++.++...+.|.-+|+. +-+...
T Consensus 93 ~yY~~~W-~~~---------r~IEGASQRIQEDtmrfa~i~E~Lgv~~i~simtliaFlPiL~~lS~~V~~lp~~g~i~~ 162 (315)
T PF05992_consen 93 EYYMSHW-PKL---------RHIEGASQRIQEDTMRFAKIMEDLGVSFIRSIMTLIAFLPILWELSSHVSELPFFGEIPH 162 (315)
T ss_pred HHHHHHH-HHh---------ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcccCCCch
Confidence 8886665 222 12334579999999999999888888888887777666433221 111122
Q ss_pred H-HH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Q 001511 251 V-FW-ILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVL 328 (1064)
Q Consensus 251 ~-li-~l~~~~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~~~l~~~f~~l~~~~~~~~ 328 (1064)
. ++ +++...+..+++...|.++..+..+.|+.|+++|..+..-.++.+. ++ ...+.+.|.++.++..+.-
T Consensus 163 ~Lv~~ai~~s~~gt~~l~~vGikLPgLe~~nQkvEAAyRKeLV~gED~~~r-----a~---~~tl~eLF~~Vr~Ny~rly 234 (315)
T PF05992_consen 163 SLVWAAIIWSLFGTILLAFVGIKLPGLEFNNQKVEAAYRKELVYGEDDANR-----AQ---PPTLRELFSNVRRNYFRLY 234 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHHHHHHhcCccccc-----CC---chhHHHHHHHHHHHHHHHH
Confidence 2 22 2333344455566678888888899999999999865443333211 11 2235577877777776654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 329 HDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSG 408 (1064)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~~~i~~l~~~~~~l~~~~~ 408 (1064)
......++........ ...++.+++.|.++.|.+ |+|... .....+...-+++.-+...+..+.++.+
T Consensus 235 ~hy~yfni~~~~y~q~-~~i~~~i~l~Psi~ag~i-----TLG~~~------Qi~~aF~~V~~sfq~lv~~W~tivEL~S 302 (315)
T PF05992_consen 235 FHYMYFNIARISYLQF-DVIFPYIILIPSIVAGAI-----TLGVLQ------QISNAFGQVRSSFQYLVNSWTTIVELRS 302 (315)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccc-----cHHHHH------HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4444455544443322 233455555555565544 777432 1223445555677777788888888888
Q ss_pred HHHHHHHH
Q 001511 409 YADRIHEL 416 (1064)
Q Consensus 409 ~~~Ri~el 416 (1064)
..+|+.++
T Consensus 303 i~kRL~~F 310 (315)
T PF05992_consen 303 IYKRLRAF 310 (315)
T ss_pred HHHHHHHH
Confidence 88888775
|
meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-11 Score=131.17 Aligned_cols=131 Identities=16% Similarity=0.134 Sum_probs=86.5
Q ss_pred eeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcc--cCCCCccEEEeCCCCccccccEEEEecCCCCCc--ccHHHHhc
Q 001511 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG--LWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAV--GTLRDQLI 534 (1064)
Q Consensus 459 ~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~G--l~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~--~Ti~eni~ 534 (1064)
.+=+|+++.=..+.+++|+||||+|||||+|.++. .. +..|...... .-.+++..|...-.. .++.+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----~~~~~~~d~i~~~l~~~~si~~--- 87 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----SATIGLVDKIFTRMSSRESVSS--- 87 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----CcEEeeeeeeeeeeCCccChhh---
Confidence 34455554322237899999999999999999984 33 5567654322 135677766431110 01100
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcC--hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 001511 535 YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELS--LGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612 (1064)
Q Consensus 535 ~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LS--GGqrQRlaIARAL~~~P~iliLDEPTSaLD~~ 612 (1064)
.+| .-+-||+++|++++.+|+++|+|||++++|+.
T Consensus 88 -------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~ 124 (213)
T cd03281 88 -------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTE 124 (213)
T ss_pred -------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence 112 34679999999999999999999999999986
Q ss_pred HHHH----HHHHHHhc---CcEEEEEccChhHHHhc
Q 001511 613 MEER----FCAKVRAM---GTSCITISHRPALVAFH 641 (1064)
Q Consensus 613 ~~~~----l~~~l~~~---g~TvI~ItH~l~~i~~~ 641 (1064)
.... +.+.+.+. +.++|++||+.+.+...
T Consensus 125 ~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 125 DGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 4332 23333333 35899999999988654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.6e-11 Score=158.74 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=92.0
Q ss_pred CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCC-cccCCCCCcChHHHH------HHHHHHHHccC
Q 001511 524 TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE-KEINWGDELSLGEQQ------RLGMARLFYHK 596 (1064)
Q Consensus 524 l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~-~~~~~g~~LSGGqrQ------RlaIARAL~~~ 596 (1064)
.|.||+.|||.+ .+. .+++ .++++.++...++..+|.+ +.......||||||| |++||||++.+
T Consensus 1153 ~~~~~~~~~i~~-~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~ 1223 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSD------ADEN--VSASDKRRNYNYRVVMLKGDTALDMRGRCSAGQKVLASLIIRLALAETFCLN 1223 (1311)
T ss_pred HcCccHHHHhhc-CCC------CChH--HHHHHHcCchHHHhccCCCCeecCCCCCCchhhhhHhhHhHHHHHHHHHhcC
Confidence 467999999998 332 2333 5777888888888888765 334444589999999 99999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh--------cCcEEEEEccChhHHH------hcCEEEEEe
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKVRA--------MGTSCITISHRPALVA------FHDVVLSLD 648 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l~~--------~g~TvI~ItH~l~~i~------~~D~Il~l~ 648 (1064)
|++++|||||++||+.+...+.+.+.. .|.|+|+|||++..+. .+|+.+.+.
T Consensus 1224 ~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1224 CGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLK 1289 (1311)
T ss_pred CCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeee
Confidence 999999999999999999887765532 3789999999999875 356666554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-11 Score=136.34 Aligned_cols=165 Identities=28% Similarity=0.369 Sum_probs=114.5
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCC--C-------cc------------cc--ccEEEEecCCCCC
Q 001511 469 EPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV--G-------SD------------LN--KEIFYVPQRPYTA 525 (1064)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~--~-------~~------------lr--~~i~~v~Q~p~l~ 525 (1064)
.+|+..++||.||-||||-+++++|-.+|.-|.-.-+.. + .+ ++ -+..||-|-|-..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 489999999999999999999999999998776432210 0 00 00 0111222222222
Q ss_pred cccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCC
Q 001511 526 VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605 (1064)
Q Consensus 526 ~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEP 605 (1064)
.+++++.+.--. ..+...++++..+|....++-. .+|||||-||.+||.+.+++.++.++|||
T Consensus 178 k~~v~~~l~~~~---------~r~~~~~~~~~~~L~~~~~re~--------~~lsggelqrfaia~~~vq~advyMFDEp 240 (592)
T KOG0063|consen 178 KGTVGSLLDRKD---------ERDNKEEVCDQLDLNNLLDREV--------EQLSGGELQRFAIAMVCVQKADVYMFDEP 240 (592)
T ss_pred HHHHHHHHHHHh---------hcccHHHHHHHHHHhhHHHhhh--------hhcccchhhhhhhhhhhhhhcceeEecCC
Confidence 234444432111 1123445666666666665533 37999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHHh-cCEEEEEeCC
Q 001511 606 TSAVTTDMEERFCAKVR---AMGTSCITISHRPALVAF-HDVVLSLDGE 650 (1064)
Q Consensus 606 TSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~~-~D~Il~l~~~ 650 (1064)
.|-||...+..-...++ ..+.=+|+|.||++.+.+ .|-|..+-+-
T Consensus 241 SsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYGv 289 (592)
T KOG0063|consen 241 SSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGV 289 (592)
T ss_pred cccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEecC
Confidence 99999988766544444 347889999999998875 6888888764
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-10 Score=124.23 Aligned_cols=137 Identities=17% Similarity=0.168 Sum_probs=86.6
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcc-cCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCC
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG-LWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP 536 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~G-l~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~ 536 (1064)
+.+.+|+++.+++|++++|+||||+||||+++.+++ .+.++.|.... +.. -.+++..| |...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~-a~~----~~~~~~~~------------i~~~ 80 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP-ASS----ATLSIFDS------------VLTR 80 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE-cCc----eEEeccce------------EEEE
Confidence 568999999999999999999999999999999999 77888887543 211 12333222 2110
Q ss_pred CCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH--
Q 001511 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME-- 614 (1064)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~-- 614 (1064)
....+ + +. -|+.. + ..|-+|++-.---+.+|+++|+|||.++.|+...
T Consensus 81 ~~~~d-----~---~~-----~~~St----------------F-~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~ 130 (222)
T cd03287 81 MGASD-----S---IQ-----HGMST----------------F-MVELSETSHILSNCTSRSLVILDELGRGTSTHDGIA 130 (222)
T ss_pred ecCcc-----c---cc-----cccch----------------H-HHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHH
Confidence 00000 0 00 00011 1 1233344333334568999999999666664332
Q ss_pred --HHHHHHHHhc-CcEEEEEccChhHHHhc
Q 001511 615 --ERFCAKVRAM-GTSCITISHRPALVAFH 641 (1064)
Q Consensus 615 --~~l~~~l~~~-g~TvI~ItH~l~~i~~~ 641 (1064)
..+.+.+.+. +.++|++||+.++....
T Consensus 131 i~~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 131 IAYATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 3355555555 89999999999886543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.1e-11 Score=128.44 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCC-----CCCCHHHHHHHHHHHHhc
Q 001511 583 EQQRLGMARLFYHKPKFAILDECT-----SAVTTDMEERFCAKVRAM 624 (1064)
Q Consensus 583 qrQRlaIARAL~~~P~iliLDEPT-----SaLD~~~~~~l~~~l~~~ 624 (1064)
|++++.|||+++.+|+++++|||| ++||+.+.+.+.+.+++.
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999988763
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-10 Score=142.81 Aligned_cols=75 Identities=25% Similarity=0.358 Sum_probs=67.9
Q ss_pred CCcChHHHHHHHHHHHHc----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHhc-CcEEEEEccChhHHHhcCEE
Q 001511 577 DELSLGEQQRLGMARLFY----------HKPKFAILDECT-SAVTTDMEERFCAKVRAM-GTSCITISHRPALVAFHDVV 644 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~----------~~P~iliLDEPT-SaLD~~~~~~l~~~l~~~-g~TvI~ItH~l~~i~~~D~I 644 (1064)
..||||||||++|||||+ .+|+++|||||| ++||+.....+.+.+++. |.|+|+|||+......+|++
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~~~d~~ 546 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQKFDRH 546 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchhhhhcE
Confidence 479999999999999987 599999999998 789999999999888774 78999999999888889999
Q ss_pred EEEeCCC
Q 001511 645 LSLDGEG 651 (1064)
Q Consensus 645 l~l~~~g 651 (1064)
+++++.|
T Consensus 547 ~~l~~~~ 553 (562)
T PHA02562 547 LKMEKVG 553 (562)
T ss_pred EEEEEEC
Confidence 9998744
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-10 Score=139.85 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=67.1
Q ss_pred CcChHHHHHHHHHHHHccC----CCEEEEeCCCCCCCHHHHHHHHHHHHh--cCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 578 ELSLGEQQRLGMARLFYHK----PKFAILDECTSAVTTDMEERFCAKVRA--MGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 578 ~LSGGqrQRlaIARAL~~~----P~iliLDEPTSaLD~~~~~~l~~~l~~--~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
.|||||+||++|||+++.. |+++|+||||++||+.+...+.+.+++ .+.|||+|||++..+..+|++++++++
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 6999999999999999985 699999999999999999998888765 389999999999999999999999864
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.5e-10 Score=136.52 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=67.1
Q ss_pred CcChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 578 ELSLGEQQRLGMARLFYH----KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 578 ~LSGGqrQRlaIARAL~~----~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
.|||||+||++||++++. +|+++|+|||+++||..+...+.+.+++. +.|+|+|||++..+..||+++.++++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 599999999999999996 68999999999999999999998888753 68999999999999999999999864
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=136.50 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=53.6
Q ss_pred CCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH----HHHHhcCcEEEEEccChhHHHh
Q 001511 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFC----AKVRAMGTSCITISHRPALVAF 640 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~----~~l~~~g~TvI~ItH~l~~i~~ 640 (1064)
+++|+||+|++.|++++ .+|+++|+|||++|+|+.....+. +.+.+.|.++|++||+.+....
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKAL 455 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHH
Confidence 47999999999999998 899999999999999998766653 3344568999999999887754
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.9e-09 Score=114.85 Aligned_cols=155 Identities=18% Similarity=0.233 Sum_probs=88.1
Q ss_pred EEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHH-HHHhcccCCCCccEEEeCCCCccccccEEEEecCCC
Q 001511 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSL-FRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1064)
Q Consensus 445 i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTL-l~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~ 523 (1064)
+.+++++..+.+ .+++|+.++|+||+||||||| ++.+.++.++... +.|+..+..
T Consensus 8 ~~~~~ld~~l~g----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~--------------~~yi~~e~~ 63 (230)
T PRK08533 8 LSRDELHKRLGG----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYS--------------VSYVSTQLT 63 (230)
T ss_pred EEEeeeehhhCC----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCc--------------EEEEeCCCC
Confidence 455666654433 279999999999999999999 6899987764322 334432210
Q ss_pred CCcccHHHHhc-CCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc----CCC
Q 001511 524 TAVGTLRDQLI-YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH----KPK 598 (1064)
Q Consensus 524 l~~~Ti~eni~-~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~----~P~ 598 (1064)
...+.++.. ++. + +.+.... +.-.+.+-.| .+|+++.++-.+++.+-. +|+
T Consensus 64 --~~~~~~~~~~~g~---------~---~~~~~~~-~~l~~~~~~~---------~~~~~~~~~~~l~~il~~~~~~~~~ 119 (230)
T PRK08533 64 --TTEFIKQMMSLGY---------D---INKKLIS-GKLLYIPVYP---------LLSGNSEKRKFLKKLMNTRRFYEKD 119 (230)
T ss_pred --HHHHHHHHHHhCC---------c---hHHHhhc-CcEEEEEecc---------cccChHHHHHHHHHHHHHHHhcCCC
Confidence 011111110 110 0 0011100 0000111112 467777766666665543 699
Q ss_pred EEEEeCCCCCC----CHHHHHHHHHHHH---hcCcEEEEEccChhHH--------H-hcCEEEEEe
Q 001511 599 FAILDECTSAV----TTDMEERFCAKVR---AMGTSCITISHRPALV--------A-FHDVVLSLD 648 (1064)
Q Consensus 599 iliLDEPTSaL----D~~~~~~l~~~l~---~~g~TvI~ItH~l~~i--------~-~~D~Il~l~ 648 (1064)
++++||||+++ |+...+.+.+.++ +.|.|+++ ||+.... . .+|-|+.|+
T Consensus 120 ~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 120 VIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred EEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 99999999999 7666666666654 45776655 5554332 1 257777775
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-10 Score=118.10 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=62.2
Q ss_pred CCcChHHHHHHHHHHHHccCCCEEEEeC--CCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 577 DELSLGEQQRLGMARLFYHKPKFAILDE--CTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~~P~iliLDE--PTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
..+||+++-+..+++..+.+|+++++|| |+..+|....+.+.+.+ +.+.++|+++|+......+|+|..+.++
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRRSVHPFVQEIKSRPGG 151 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECchhhHHHHHHHhccCCc
Confidence 3699999999999999999999999999 66677777777777777 6789999999997666788998888764
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.9e-09 Score=137.34 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=66.0
Q ss_pred CCCcChHHHHHHHH------HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hc-C-cEEEEEccChhHHHhcCE
Q 001511 576 GDELSLGEQQRLGM------ARLFYHKPKFAILDECTSAVTTDMEERFCAKVR----AM-G-TSCITISHRPALVAFHDV 643 (1064)
Q Consensus 576 g~~LSGGqrQRlaI------ARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~----~~-g-~TvI~ItH~l~~i~~~D~ 643 (1064)
...||||||||++| ||+++.+|++++|||||++||+.....+.+.+. .. + .|+|+|||+...+..||+
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d~ 878 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVADV 878 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcCe
Confidence 46899999999975 599999999999999999999999988877654 22 3 489999999999999999
Q ss_pred EEEEeCCC
Q 001511 644 VLSLDGEG 651 (1064)
Q Consensus 644 Il~l~~~g 651 (1064)
|+.+...|
T Consensus 879 ii~~~~~~ 886 (895)
T PRK01156 879 AYEVKKSS 886 (895)
T ss_pred EEEEEecC
Confidence 99998543
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-09 Score=138.94 Aligned_cols=77 Identities=18% Similarity=0.109 Sum_probs=67.5
Q ss_pred CCCcChHHHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHH-hc
Q 001511 576 GDELSLGEQQRLGMARLFYH----------KPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVA-FH 641 (1064)
Q Consensus 576 g~~LSGGqrQRlaIARAL~~----------~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~-~~ 641 (1064)
...|||||++|++||+||+. +|+++|+||||++||+.+...+.+.+++ .|++|++|||+++... .+
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~ 1027 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIP 1027 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhC
Confidence 35899999999999999985 7999999999999999999988877654 5899999999999875 68
Q ss_pred CEEEEEeCCCc
Q 001511 642 DVVLSLDGEGE 652 (1064)
Q Consensus 642 D~Il~l~~~g~ 652 (1064)
|+|.|+..+||
T Consensus 1028 ~~i~v~~~~~g 1038 (1042)
T TIGR00618 1028 HRILVKKTNAG 1038 (1042)
T ss_pred CEEEEEECCCC
Confidence 99999976543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.2e-09 Score=135.62 Aligned_cols=74 Identities=24% Similarity=0.248 Sum_probs=64.9
Q ss_pred CCcChHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEEEEE
Q 001511 577 DELSLGEQQ------RLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVVLSL 647 (1064)
Q Consensus 577 ~~LSGGqrQ------RlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~Il~l 647 (1064)
..|||||+| |+||||+++.+|+++|+||||++||+.....+.+.+.. .+.|+|+|||+......||++++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 479999999 56666788999999999999999999999998887654 367999999999988899999999
Q ss_pred eCC
Q 001511 648 DGE 650 (1064)
Q Consensus 648 ~~~ 650 (1064)
+.+
T Consensus 867 ~~~ 869 (880)
T PRK03918 867 SLE 869 (880)
T ss_pred Eec
Confidence 843
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.8e-09 Score=121.77 Aligned_cols=149 Identities=20% Similarity=0.218 Sum_probs=97.9
Q ss_pred CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC--------------ccccccEEEEecC
Q 001511 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG--------------SDLNKEIFYVPQR 521 (1064)
Q Consensus 456 ~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~--------------~~lr~~i~~v~Q~ 521 (1064)
.+..+++++ |++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.|.+ ..+++.+.++.+.
T Consensus 144 tg~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 144 VGVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS 222 (438)
T ss_pred cchhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence 356789999 9999999999999999999999999999999999999986643 1245667777653
Q ss_pred --CCCCc-------ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccC-CCCCcChHHHHHHHHHH
Q 001511 522 --PYTAV-------GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEIN-WGDELSLGEQQRLGMAR 591 (1064)
Q Consensus 522 --p~l~~-------~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~-~g~~LSGGqrQRlaIAR 591 (1064)
|.... .|+.|.+. ++ .. ++- .-++|+ |.|-|-
T Consensus 223 ~~~~~~r~~~~~~a~~iAEyfr------------------------------~~-g~--~Vll~~Dslt-----r~A~A~ 264 (438)
T PRK07721 223 DQPALMRIKGAYTATAIAEYFR------------------------------DQ-GL--NVMLMMDSVT-----RVAMAQ 264 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH------------------------------HC-CC--cEEEEEeChH-----HHHHHH
Confidence 21100 12222222 11 00 000 001121 111111
Q ss_pred ----HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh-----cCc-----EEEEEccChhHHHhcCEEEEEeCC
Q 001511 592 ----LFYHKPKFAILDECTSAVTTDMEERFCAKVRA-----MGT-----SCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 592 ----AL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~-----~g~-----TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
..+.+|+ .|+|+|+.....+.+.+++ .|. ||++.+||++. ..+|++..+.++
T Consensus 265 rEisl~~ge~P------~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG 330 (438)
T PRK07721 265 REIGLAVGEPP------TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDG 330 (438)
T ss_pred HHHHHhcCCCC------ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCE
Confidence 0122333 3789999999887777654 354 99999999985 778999988753
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-08 Score=106.89 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=55.5
Q ss_pred CCcChHHHH------HHHHHHHHccCCCEEEEeCCCCCCC---HHHHHHHHHH---HHhcCcEEEEEccChhH-------
Q 001511 577 DELSLGEQQ------RLGMARLFYHKPKFAILDECTSAVT---TDMEERFCAK---VRAMGTSCITISHRPAL------- 637 (1064)
Q Consensus 577 ~~LSGGqrQ------RlaIARAL~~~P~iliLDEPTSaLD---~~~~~~l~~~---l~~~g~TvI~ItH~l~~------- 637 (1064)
..+|+||+| ....+.+...+|+++++||||+.+| ......+.+. +++.|.|+|+++|+...
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~ 149 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGG 149 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCc
Confidence 378999999 4455555668999999999999999 6555555443 45569999999998764
Q ss_pred --H-HhcCEEEEEeC
Q 001511 638 --V-AFHDVVLSLDG 649 (1064)
Q Consensus 638 --i-~~~D~Il~l~~ 649 (1064)
+ ..+|.|+.|+.
T Consensus 150 ~~~~~~aD~ii~l~~ 164 (187)
T cd01124 150 GDVEYLVDGVIRLRL 164 (187)
T ss_pred CceeEeeeEEEEEEE
Confidence 2 35899998874
|
A related protein is found in archaea. |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.1e-08 Score=105.93 Aligned_cols=137 Identities=18% Similarity=0.128 Sum_probs=81.7
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-CccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcC
Q 001511 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIY 535 (1064)
Q Consensus 457 ~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~ 535 (1064)
++.+-+|++|+.++|++++|+||||+||||+++.++...-. ..|.- ++.. ..+++++.+ .+......|++..
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~-vpa~----~~~i~~~~~--i~~~~~~~d~~~~ 88 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD-VPAK----SMRLSLVDR--IFTRIGARDDIMK 88 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCc-cCcc----ccEeccccE--EEEecCccccccc
Confidence 35788999999999999999999999999999999875321 11210 1100 001111100 0000000111111
Q ss_pred CCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 001511 536 PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615 (1064)
Q Consensus 536 ~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~ 615 (1064)
+ . +.+. .|-++++-.-....+|+++|+|||.+|.|+....
T Consensus 89 ~-----------------------~----------------StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~ 128 (218)
T cd03286 89 G-----------------------E----------------STFM-VELSETANILRHATPDSLVILDELGRGTSTHDGY 128 (218)
T ss_pred C-----------------------c----------------chHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHH
Confidence 0 0 0111 2334443333345789999999999999987655
Q ss_pred HHH----HHHHhc-CcEEEEEccChhHHHh
Q 001511 616 RFC----AKVRAM-GTSCITISHRPALVAF 640 (1064)
Q Consensus 616 ~l~----~~l~~~-g~TvI~ItH~l~~i~~ 640 (1064)
.+. +.+.+. +.++|++||+.+....
T Consensus 129 ~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 129 AIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 443 344444 8999999999998764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-08 Score=116.71 Aligned_cols=155 Identities=17% Similarity=0.093 Sum_probs=108.4
Q ss_pred cEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCC
Q 001511 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPY 523 (1064)
Q Consensus 444 ~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~ 523 (1064)
.++-++++..+..+..+++++ |.+.+||+++|+|+||+|||||++.|+|..+|+.|.|.+.|. +.
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGe-------------rg- 194 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGE-------------RG- 194 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCC-------------Cc-
Confidence 456677777676677888885 999999999999999999999999999999999887765553 21
Q ss_pred CCcccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHc-------cC
Q 001511 524 TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFY-------HK 596 (1064)
Q Consensus 524 l~~~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~-------~~ 596 (1064)
.++.|.+.. .+..-++..- ..+..-.+-|.|+|+|++.+.+.+ .+
T Consensus 195 ---~ev~e~~~~------------------~l~~~gl~~t-------vvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~ 246 (432)
T PRK06793 195 ---REVKDFIRK------------------ELGEEGMRKS-------VVVVATSDESHLMQLRAAKLATSIAEYFRDQGN 246 (432)
T ss_pred ---ccHHHHHHH------------------Hhhhccccee-------EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 234443321 1111111100 000011367999999999999887 78
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCE
Q 001511 597 PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDV 643 (1064)
Q Consensus 597 P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~ 643 (1064)
+-++++||||...|+. +++-..+.+ .|.+..+.||-..+.+.+-.
T Consensus 247 ~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~ 294 (432)
T PRK06793 247 NVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK 294 (432)
T ss_pred cEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc
Confidence 9999999999999986 334334433 37788888885555555543
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.74 E-value=3e-09 Score=124.11 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=44.3
Q ss_pred eeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCcc-EEEeCCCC
Q 001511 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG-HIAKPGVG 508 (1064)
Q Consensus 459 ~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G-~I~i~g~~ 508 (1064)
.+|++||+++++||+++|+||||||||||++ +|+.+|++| +|.++|.+
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~ 68 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATH 68 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEE
Confidence 6899999999999999999999999999999 788888888 79999964
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-08 Score=133.70 Aligned_cols=73 Identities=27% Similarity=0.381 Sum_probs=64.9
Q ss_pred CCCcChHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEe
Q 001511 576 GDELSLGEQQRLGMARLF----YHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 576 g~~LSGGqrQRlaIARAL----~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1064)
...||||||||++||+++ +.+|+++||||||++||+.....+.+.+... +.++|+|||++..+..||+++.+.
T Consensus 1087 ~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~~ 1165 (1179)
T TIGR02168 1087 LSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGVT 1165 (1179)
T ss_pred ccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeeee
Confidence 458999999999999998 4677999999999999999999998887653 678999999999998999998664
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.2e-08 Score=111.42 Aligned_cols=127 Identities=17% Similarity=0.177 Sum_probs=82.5
Q ss_pred ceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc-ccc--ccEEEEecCCCCCcccHHHHhcCCCCCC
Q 001511 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-DLN--KEIFYVPQRPYTAVGTLRDQLIYPLTSD 540 (1064)
Q Consensus 464 vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~-~lr--~~i~~v~Q~p~l~~~Ti~eni~~~~~~~ 540 (1064)
+++.+++|+.++|+||+|||||||+++|++++++..|.+.++...+ .++ ..+.++.+.. .
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~----------------~- 199 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKG----------------G- 199 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCC----------------C-
Confidence 5678889999999999999999999999999999888777654211 000 1111111100 0
Q ss_pred CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 001511 541 QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAK 620 (1064)
Q Consensus 541 ~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~ 620 (1064)
+. ....+ ..-.++.+|-.+|+++++|||.+ .+.. .+++.
T Consensus 200 ---------------------------~~------~~~~~----~~~~l~~~Lr~~pd~ii~gE~r~---~e~~-~~l~a 238 (308)
T TIGR02788 200 ---------------------------QG------LAKVT----PKDLLQSCLRMRPDRIILGELRG---DEAF-DFIRA 238 (308)
T ss_pred ---------------------------CC------cCccC----HHHHHHHHhcCCCCeEEEeccCC---HHHH-HHHHH
Confidence 00 00111 12246677889999999999996 3322 23444
Q ss_pred HHhcCcEEEEEccChhHHHhcCEEEEEe
Q 001511 621 VRAMGTSCITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 621 l~~~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1064)
+...+.+++.++|..+.....||+..+.
T Consensus 239 ~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~ 266 (308)
T TIGR02788 239 VNTGHPGSITTLHAGSPEEAFEQLALMV 266 (308)
T ss_pred HhcCCCeEEEEEeCCCHHHHHHHHHHHh
Confidence 4433346799999998777777776664
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4e-08 Score=128.09 Aligned_cols=74 Identities=19% Similarity=0.081 Sum_probs=62.0
Q ss_pred CCCcChHHHHHHHHHHHHcc--------CCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEccChhHHHhc-CE
Q 001511 576 GDELSLGEQQRLGMARLFYH--------KPKFAILDECTSAVTTDMEERFCAKVR---AMGTSCITISHRPALVAFH-DV 643 (1064)
Q Consensus 576 g~~LSGGqrQRlaIARAL~~--------~P~iliLDEPTSaLD~~~~~~l~~~l~---~~g~TvI~ItH~l~~i~~~-D~ 643 (1064)
..+|||||+|+++||+||.. +|+++|+||||++||+.+...+++.+. +.|+||++|||...+.... .+
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccce
Confidence 35899999999999999995 899999999999999999999887765 3599999999987777654 44
Q ss_pred EEEEeC
Q 001511 644 VLSLDG 649 (1064)
Q Consensus 644 Il~l~~ 649 (1064)
|.|-..
T Consensus 1027 i~V~k~ 1032 (1047)
T PRK10246 1027 IKVKKI 1032 (1047)
T ss_pred EEEEEC
Confidence 545443
|
|
| >COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00016 Score=78.99 Aligned_cols=297 Identities=14% Similarity=0.171 Sum_probs=159.7
Q ss_pred HHHHHhhchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------hhHHHHHHHHHHHHHHHHHHHHH
Q 001511 91 LAAILLSEMGKMGARD-LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRR-------VPLFFQLISENILLCFLLSTMHS 162 (1064)
Q Consensus 91 L~~~~~p~~~~~~~~~-ll~~~~l~l~~t~ls~~l~~~~~~~i~a~~~~~-------~~~~~~~l~~~~~l~~~~~~~~~ 162 (1064)
.+....|+++....-. -+..+...-....++++++.+.+.|+|-+++.- ...|...+.++..+.++...++.
T Consensus 73 fw~~~sph~wq~wsilgtali~f~tyF~vqvsvain~wy~pf~d~~q~als~~~~~t~~~fY~~~~vF~~IA~~~v~i~v 152 (405)
T COG1133 73 FWFIYSPHRWQYWSILGTALIIFVTYFLVQVSVAVNAWYGPFYDLIQNALSSPPKVTAGQFYSLVGVFLGIALIAVVISV 152 (405)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456555433211 112233344445577788999999998776422 12345555666666666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 163 TSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPRFCSELSELVQDDLTAVTDGLLYTWRL 242 (1064)
Q Consensus 163 ~~~yl~~~l~~~~r~~L~~~l~~~~f~~~~~~~i~~~~~~~~n~~qRit~Di~~~~~~i~~l~~~~l~~ii~~~~~~~~l 242 (1064)
+-.|+.+.-.-|||..++....+.|= ++ +++....||+.+|..++++.+-++-.+++.++.+.+.|.=++
T Consensus 153 ln~ffvShyiFrWRtAMn~~ym~~W~-kl---------rhIEGasQRvQEDTmrFSstlE~LGvsfi~siMTLiaFlPvL 222 (405)
T COG1133 153 LNNFFVSHYIFRWRTAMNEYYMANWQ-KL---------RHIEGASQRVQEDTMRFSSTLENLGVSFINAIMTLIAFLPVL 222 (405)
T ss_pred HHHHHHHHHHhHHHHHhhHHHHHhhh-hh---------ccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 77888888899999999876655542 21 223345699999999999988888888887777666553222
Q ss_pred H---HH--------hhhhHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Q 001511 243 C---SY--------ASPKYVFWILAYV-LGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEE 310 (1064)
Q Consensus 243 ~---~~--------~~~~L~li~l~~~-~l~~~i~~~~~~~~~k~~~~~q~~~~~~r~~~~~l~~~~e~Ik~~~~e~~e~ 310 (1064)
. .. ..|...+++.+.. ....++....|-++-.+..+.|+.|+.+|..+..-.++.+- + +.
T Consensus 223 ~~ls~~Vs~Lpiig~ip~~Lv~aAi~wslfGtv~la~vGIKLPGLef~NQrvEAAyRKELVYgEDh~dr--A---~p--- 294 (405)
T COG1133 223 FTLSAHVSELPIIGHIPHALVWAAIVWSLFGTVLLAVVGIKLPGLEFRNQRVEAAYRKELVYGEDHADR--A---TP--- 294 (405)
T ss_pred HHHHHhcccCcccccCchHHHHHHHHHHHhchHHHHhhhccCCCcccccHHHHHHHHhhhhccCCchhh--c---CC---
Confidence 2 11 1233333332222 22223333445555566677888888888755444444321 1 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHH
Q 001511 311 SHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLF 390 (1064)
Q Consensus 311 ~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~g~l~~~~~tlG~~~l~a~l~~~~~~l~~~~ 390 (1064)
....+.|+++..+..+.-.....+++..-+....- .++..++..+..++| ..|+|....++ ..+.+.-
T Consensus 295 ~T~~ELf~nvr~NYfRLyfHY~YFNiari~ylQ~d-nif~llil~PsivAg-----kitlG~~~QI~------n~FgqVr 362 (405)
T COG1133 295 PTVRELFSNVRKNYFRLYFHYMYFNIARILYLQVD-NIFGLLILFPSIVAG-----KITLGLMTQIT------NVFGQVR 362 (405)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHhc-----hhhHHHHHHHH------HHHHHhh
Confidence 11234555555554443211222222221211111 122223333333334 34676433222 2344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001511 391 QSLGTLSISSRRLNRLSGYADRIHELM 417 (1064)
Q Consensus 391 ~~i~~l~~~~~~l~~~~~~~~Ri~ell 417 (1064)
.++.-+.+++..+.++..--+|+.++.
T Consensus 363 ~SfqylinsWTTIveL~SIyKRLraFE 389 (405)
T COG1133 363 GSFQYLINSWTTIVELLSIYKRLRAFE 389 (405)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 555566666777777777777776653
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.64 E-value=1e-07 Score=101.44 Aligned_cols=57 Identities=9% Similarity=0.130 Sum_probs=46.5
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhcCEEEEEe
Q 001511 588 GMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 588 aIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1064)
+++++|..+|+++++|||. |.++...+.+.. ..|.+++.++|..+.....||++.+-
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a-~~G~~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALTAA-ETGHLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHHH-HcCCEEEEEecCCcHHHHHhHHHhhc
Confidence 5889999999999999996 777666655544 46899999999999888888887664
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.6e-08 Score=128.60 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=66.5
Q ss_pred CCCcChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEccChhHHHhcCEEEEEeC
Q 001511 576 GDELSLGEQQRLGMARLFYH----KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649 (1064)
Q Consensus 576 g~~LSGGqrQRlaIARAL~~----~P~iliLDEPTSaLD~~~~~~l~~~l~~~--g~TvI~ItH~l~~i~~~D~Il~l~~ 649 (1064)
...||||||++++||++|+. +||++|||||+++||+.....+.+.+.+. +.++|+|||+..++..||+++.+..
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 45799999999999999974 78999999999999999999999888763 6789999999999999999988754
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.61 E-value=2e-07 Score=93.85 Aligned_cols=127 Identities=23% Similarity=0.203 Sum_probs=76.4
Q ss_pred EEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHH
Q 001511 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 552 (1064)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~ 552 (1064)
+++|.||||+||||+++.+++...+..|.+ .|+.++.... ...++...... .
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v-------------~~~~~e~~~~--~~~~~~~~~~~-------------~ 52 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKV-------------VYVDIEEEIE--ELTERLIGESL-------------K 52 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEE-------------EEEECCcchH--HHHHHHhhhhh-------------c
Confidence 378999999999999999999887655544 4444443211 11111100000 0
Q ss_pred HHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCC----------HHHHHHHHHH--
Q 001511 553 ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT----------TDMEERFCAK-- 620 (1064)
Q Consensus 553 ~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD----------~~~~~~l~~~-- 620 (1064)
...+. ..+... +....+.++.++++.+++...+|+++++||+++-++ ....+.+.++
T Consensus 53 ~~~~~---~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 121 (165)
T cd01120 53 GALDN---LIIVFA--------TADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLE 121 (165)
T ss_pred ccccc---EEEEEc--------CCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 00000 000111 112345667778899999999999999999996544 3434444443
Q ss_pred -HHhcCcEEEEEccChhHH
Q 001511 621 -VRAMGTSCITISHRPALV 638 (1064)
Q Consensus 621 -l~~~g~TvI~ItH~l~~i 638 (1064)
.++.+.|+|+++|.....
T Consensus 122 ~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 122 RARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHhcCCceEEEEEecCCcc
Confidence 344699999999976543
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.8e-07 Score=93.18 Aligned_cols=73 Identities=25% Similarity=0.329 Sum_probs=58.2
Q ss_pred CcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHh-cCEEEEEeCCC
Q 001511 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAF-HDVVLSLDGEG 651 (1064)
Q Consensus 578 ~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~-~D~Il~l~~~g 651 (1064)
..|-||-=---+.+.+ ++.-|.|||||-++|.+.-+-.++..+++ .|.-+|+.||.+-++.. .-.|+.++.+|
T Consensus 129 ~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g 205 (233)
T COG3910 129 HMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESG 205 (233)
T ss_pred hhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCC
Confidence 5788887666666665 45689999999999999999888776654 58999999999887764 46788887765
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-07 Score=113.89 Aligned_cols=75 Identities=23% Similarity=0.337 Sum_probs=64.6
Q ss_pred CCCcChHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHHH---HhcCcEEEEEccChhHHHhcCEEEEEeCC
Q 001511 576 GDELSLGEQQRLGMARLFYHK--PKFAILDECTSAVTTDMEERFCAKV---RAMGTSCITISHRPALVAFHDVVLSLDGE 650 (1064)
Q Consensus 576 g~~LSGGqrQRlaIARAL~~~--P~iliLDEPTSaLD~~~~~~l~~~l---~~~g~TvI~ItH~l~~i~~~D~Il~l~~~ 650 (1064)
..+|||||.||+-||.-+-.+ -=+.+||||+.||-+.--+++.+.| ++.|-|+|+|.||.++++.||+|+-+-.+
T Consensus 479 a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDiGPg 558 (935)
T COG0178 479 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPG 558 (935)
T ss_pred CCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCC
Confidence 358999999999999999765 4588999999999887776666554 56799999999999999999999999654
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.6e-08 Score=114.76 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=84.3
Q ss_pred eeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCC
Q 001511 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSD 540 (1064)
Q Consensus 461 L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~ 540 (1064)
+++.++.+++|++++++||||+||||++..|++.+.+..|.. +|++|++|++ ..+..||+.+.....
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------kV~LI~~Dt~--RigA~EQLr~~Aeil 312 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------KVALLTTDSY--RIGGHEQLRIYGKIL 312 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------eEEEEeCCcc--chhHHHHHHHHHHHh
Confidence 344555667899999999999999999999999887666632 5889999984 456778886422111
Q ss_pred CcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHH-HHHHHHHHccCC-----CEEEEeCCCCCCCHHHH
Q 001511 541 QEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQ-RLGMARLFYHKP-----KFAILDECTSAVTTDME 614 (1064)
Q Consensus 541 ~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQ-RlaIARAL~~~P-----~iliLDEPTSaLD~~~~ 614 (1064)
+.......+.........++.+....+. ++...+|+- .+.-+.+++.++ .+|+||.++..-| -
T Consensus 313 GVpv~~~~~~~Dl~~aL~~L~d~d~VLI--------DTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~---l 381 (484)
T PRK06995 313 GVPVHAVKDAADLRLALSELRNKHIVLI--------DTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT---L 381 (484)
T ss_pred CCCeeccCCchhHHHHHHhccCCCeEEe--------CCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH---H
Confidence 1110011111122223334433211111 121111211 223333444444 6899999988733 2
Q ss_pred HHHHHHHHhcCcEEEEEcc
Q 001511 615 ERFCAKVRAMGTSCITISH 633 (1064)
Q Consensus 615 ~~l~~~l~~~g~TvI~ItH 633 (1064)
.++.+..+..+.+-+++|+
T Consensus 382 ~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 382 NEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred HHHHHHhccCCCCEEEEeC
Confidence 3333444455777777787
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-07 Score=122.08 Aligned_cols=74 Identities=27% Similarity=0.399 Sum_probs=64.3
Q ss_pred CCcChHHHH------HHHHHHHHccC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHh---cCc-EEEEEccChhHHHh
Q 001511 577 DELSLGEQQ------RLGMARLFYHK-----P-KFAILDECTSAVTTDMEERFCAKVRA---MGT-SCITISHRPALVAF 640 (1064)
Q Consensus 577 ~~LSGGqrQ------RlaIARAL~~~-----P-~iliLDEPTSaLD~~~~~~l~~~l~~---~g~-TvI~ItH~l~~i~~ 640 (1064)
..||||||| |+++|+++..+ | +++|+||||++||+.....+.+.+.. .|. ++|+|||+...+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 479999999 99999999864 3 67999999999999999988877654 344 89999999999999
Q ss_pred cCEEEEEeCC
Q 001511 641 HDVVLSLDGE 650 (1064)
Q Consensus 641 ~D~Il~l~~~ 650 (1064)
||+++.+..+
T Consensus 860 ad~~~~~~~~ 869 (880)
T PRK02224 860 ADDLVRVEKD 869 (880)
T ss_pred cCeeEEeecC
Confidence 9999999754
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.5e-07 Score=117.73 Aligned_cols=58 Identities=10% Similarity=0.122 Sum_probs=47.6
Q ss_pred HccCCCEEEEeCCCCCC-CHHHHHHHHHHHH---hcCcEEEEEccChhHH----------HhcCEEEEEeCC
Q 001511 593 FYHKPKFAILDECTSAV-TTDMEERFCAKVR---AMGTSCITISHRPALV----------AFHDVVLSLDGE 650 (1064)
Q Consensus 593 L~~~P~iliLDEPTSaL-D~~~~~~l~~~l~---~~g~TvI~ItH~l~~i----------~~~D~Il~l~~~ 650 (1064)
+..+|+++++|||+.+| |+...+.+.+.++ +.|.++|++||+++.+ ..||..++|.++
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~ 720 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNG 720 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCc
Confidence 35799999999999999 6888877776654 4689999999999876 368888888653
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.6e-07 Score=108.47 Aligned_cols=81 Identities=22% Similarity=0.212 Sum_probs=69.5
Q ss_pred CCcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCC---C----------
Q 001511 442 ANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV---G---------- 508 (1064)
Q Consensus 442 ~~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~---~---------- 508 (1064)
.+.++.++++..|..+..+++.++ ++.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|. +
T Consensus 137 p~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~ 215 (450)
T PRK06002 137 PPAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLA 215 (450)
T ss_pred CCCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHH
Confidence 356899999999988888999996 99999999999999999999999999999999999988653 2
Q ss_pred ccccccEEEEecCCC
Q 001511 509 SDLNKEIFYVPQRPY 523 (1064)
Q Consensus 509 ~~lr~~i~~v~Q~p~ 523 (1064)
...++.|++|+|...
T Consensus 216 ~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 216 DNLKKAVAVVATSDE 230 (450)
T ss_pred HhhCCeEEEEEcCCC
Confidence 112467999999754
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.2e-06 Score=93.44 Aligned_cols=149 Identities=18% Similarity=0.182 Sum_probs=86.6
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhcc-cCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhc-CCCCCCCcCC
Q 001511 467 KVEPGSNLLITGPNGSGKSSLFRVLGG-LWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLI-YPLTSDQEVE 544 (1064)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~G-l~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~-~~~~~~~~~~ 544 (1064)
-+++|..+.|.|++|||||||...++- ... . | ..+.|+..+-. ...+.++.. ++..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~-------g------~~~~y~~~e~~--~~~~~~~~~~~g~~------ 78 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-Q-------G------KKVYVITTENT--SKSYLKQMESVKID------ 78 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-C-------C------CEEEEEEcCCC--HHHHHHHHHHCCCC------
Confidence 488999999999999999999988752 111 1 1 23556554321 111222221 1110
Q ss_pred CCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc--CCCEEEEeCCCCCC---CHHHHHHHHH
Q 001511 545 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH--KPKFAILDECTSAV---TTDMEERFCA 619 (1064)
Q Consensus 545 ~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~--~P~iliLDEPTSaL---D~~~~~~l~~ 619 (1064)
+.+... .+.-.+.+..|. .....|.++++.+...+.++. +|+++++||||+.+ |......+.+
T Consensus 79 ------~~~~~~-~g~l~i~~~~~~-----~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~ 146 (234)
T PRK06067 79 ------ISDFFL-WGYLRIFPLNTE-----GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT 146 (234)
T ss_pred ------hhHHHh-CCCceEEecccc-----ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH
Confidence 000000 000011111111 112357789999999999987 99999999999654 4444444433
Q ss_pred HH---HhcCcEEEEEccChhH-------H-HhcCEEEEEeC
Q 001511 620 KV---RAMGTSCITISHRPAL-------V-AFHDVVLSLDG 649 (1064)
Q Consensus 620 ~l---~~~g~TvI~ItH~l~~-------i-~~~D~Il~l~~ 649 (1064)
.+ ++.|.|+++++|.... + ..+|-++.|+.
T Consensus 147 ~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 147 EAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 33 4458999999997643 2 24677877764
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.5e-07 Score=99.65 Aligned_cols=113 Identities=11% Similarity=0.081 Sum_probs=66.2
Q ss_pred EEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCHHHHH
Q 001511 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV 552 (1064)
Q Consensus 473 ~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~~~i~ 552 (1064)
+++|+||||||||||.+.|.+++ ..| .+.++++|.+....+..+...............+.+.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~-------------~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNP-------------KVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLI 65 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCC-------------CeEEEEecccccccccccHHHhccCCCCCCCcccHHHHH
Confidence 48999999999999999999987 222 245566665443222222111111111111112334444
Q ss_pred HHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 001511 553 ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTT 611 (1064)
Q Consensus 553 ~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~ 611 (1064)
+.++.+...+..+. | .-+.|.|++++..+ .+.+|+++|+|+|+...++
T Consensus 66 ~~l~~l~~~~~~~~-p-------~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 66 SHLQDLKNGKSVEI-P-------VYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHHHCCCCEec-c-------ccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 55555443322221 2 13577888776555 5788999999999999876
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.3e-07 Score=105.72 Aligned_cols=80 Identities=19% Similarity=0.273 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhchhcccCCCCCCCCCCCCCCCCCCcEEEEeeEEEcCCCCeeee-----------eceEEEeCCCEEE
Q 001511 407 SGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVE-----------NLTLKVEPGSNLL 475 (1064)
Q Consensus 407 ~~~~~Ri~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nvs~~y~~~~~~L~-----------~vsl~i~~Ge~va 475 (1064)
....+|++++++.++.... .. ....+.+.|+||++.||+++.+|+ |+++.|.+|++++
T Consensus 104 ~~~~ER~~~Ll~v~~vn~~---~~--------e~~~~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~ 172 (415)
T TIGR00767 104 PKEGERYFALLKVESVNGD---DP--------EKAKNRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGL 172 (415)
T ss_pred cccHhHHHHHhCCCccCCC---Cc--------cccCCCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEE
Confidence 4567899999886543211 00 012357999999999998888897 9999999999999
Q ss_pred EEcCCCCchhHHHHHhcccCCC
Q 001511 476 ITGPNGSGKSSLFRVLGGLWPL 497 (1064)
Q Consensus 476 IvG~sGsGKSTLl~lL~Gl~~p 497 (1064)
|+||+|||||||++.|++.+..
T Consensus 173 IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 173 IVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred EECCCCCChhHHHHHHHHhhcc
Confidence 9999999999999999998764
|
Members of this family differ in the specificity of RNA binding. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.4e-07 Score=96.37 Aligned_cols=77 Identities=26% Similarity=0.248 Sum_probs=58.1
Q ss_pred eeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCCc---cccccEEEEecCCCC---CcccHHHHh
Q 001511 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS---DLNKEIFYVPQRPYT---AVGTLRDQL 533 (1064)
Q Consensus 460 ~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~~---~lr~~i~~v~Q~p~l---~~~Ti~eni 533 (1064)
..+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+++..+ ..+..+++++|.+.. ...+..+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL 93 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH
Confidence 44556678999999999999999999999999999999999999977531 123457777765532 234667766
Q ss_pred cCC
Q 001511 534 IYP 536 (1064)
Q Consensus 534 ~~~ 536 (1064)
...
T Consensus 94 ~~~ 96 (186)
T cd01130 94 RSA 96 (186)
T ss_pred HHH
Confidence 543
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.7e-07 Score=97.83 Aligned_cols=44 Identities=9% Similarity=0.196 Sum_probs=33.3
Q ss_pred HHccCCCEEEEeCCCCC------CCHHHHHHHHHHH----HhcCcEEEEEccChh
Q 001511 592 LFYHKPKFAILDECTSA------VTTDMEERFCAKV----RAMGTSCITISHRPA 636 (1064)
Q Consensus 592 AL~~~P~iliLDEPTSa------LD~~~~~~l~~~l----~~~g~TvI~ItH~l~ 636 (1064)
+...+|+++|+| |+++ +|+.....+.+.+ ++.|.|+|+++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 446899999999 7764 6887777666554 345999999999753
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.4e-07 Score=103.99 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=57.7
Q ss_pred CCcChHHHHHHHHHHHHcc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHH
Q 001511 577 DELSLGEQQRLGMARLFYH---------KPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA 639 (1064)
Q Consensus 577 ~~LSGGqrQRlaIARAL~~---------~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~ 639 (1064)
..+|.|||++++||.+|+. +|+|+|||||+|+||+..++.+.+.+.+.|.+++++||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhhcc
Confidence 3699999999999999999 99999999999999999999999999766789999999887543
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.3e-06 Score=78.44 Aligned_cols=115 Identities=26% Similarity=0.256 Sum_probs=76.6
Q ss_pred CCCEEEEEcCCCCchhHHHHHhcccCCCCc-cEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCCCH
Q 001511 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLVS-GHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTH 548 (1064)
Q Consensus 470 ~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~-G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~~~ 548 (1064)
+|..+.|+||+||||||+++.+++...... +-+.++... .... ..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~--------------~~~~--------------------~~ 46 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED--------------ILEE--------------------VL 46 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE--------------cccc--------------------CH
Confidence 468899999999999999999999887554 333333210 0000 00
Q ss_pred HHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH---------
Q 001511 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA--------- 619 (1064)
Q Consensus 549 ~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~--------- 619 (1064)
.... ...... ......+++.++..+++|-..+|+++++||+....+.........
T Consensus 47 ~~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~ 110 (148)
T smart00382 47 DQLL--------LIIVGG--------KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLL 110 (148)
T ss_pred HHHH--------hhhhhc--------cCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHH
Confidence 0000 000000 112578899999999999998999999999999999887765542
Q ss_pred HHHhcCcEEEEEccC
Q 001511 620 KVRAMGTSCITISHR 634 (1064)
Q Consensus 620 ~l~~~g~TvI~ItH~ 634 (1064)
.....+..+|.++|.
T Consensus 111 ~~~~~~~~~i~~~~~ 125 (148)
T smart00382 111 LKSEKNLTVILTTND 125 (148)
T ss_pred HHhcCCCEEEEEeCC
Confidence 222347788888884
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-05 Score=102.97 Aligned_cols=135 Identities=21% Similarity=0.232 Sum_probs=84.7
Q ss_pred CeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccC-CCCccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCC
Q 001511 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW-PLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYP 536 (1064)
Q Consensus 458 ~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~-~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~ 536 (1064)
..+=+|+++. +.+.++.|+|||++||||++|.++-.. -..-|. |||=+.. .-++.|.|
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~---------------~VPa~~a--~i~~~d~I--- 653 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGS---------------FVPAESA--RIGIVDRI--- 653 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCC---------------ceeccce--EecccCee---
Confidence 3566778887 677899999999999999999875321 111111 2221110 00111111
Q ss_pred CCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHcc--CCCEEEEeCC---CCCCCH
Q 001511 537 LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH--KPKFAILDEC---TSAVTT 611 (1064)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~--~P~iliLDEP---TSaLD~ 611 (1064)
+.++|..+-+. ..+|--+.....++++|-. ++.++|+||| |+.+|.
T Consensus 654 ------------------~triga~d~i~-----------~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg 704 (854)
T PRK05399 654 ------------------FTRIGASDDLA-----------SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDG 704 (854)
T ss_pred ------------------eeccCcccccc-----------cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchh
Confidence 11112111111 2467777777777777765 8999999999 999996
Q ss_pred HHHH-HHHHHHHhc-CcEEEEEccChhHHHhcC
Q 001511 612 DMEE-RFCAKVRAM-GTSCITISHRPALVAFHD 642 (1064)
Q Consensus 612 ~~~~-~l~~~l~~~-g~TvI~ItH~l~~i~~~D 642 (1064)
.... .+.+.+.+. +.++|++||..+....++
T Consensus 705 ~aia~aile~l~~~~~~~~l~aTH~~el~~l~~ 737 (854)
T PRK05399 705 LSIAWAVAEYLHDKIGAKTLFATHYHELTELEE 737 (854)
T ss_pred HHHHHHHHHHHHhcCCceEEEEechHHHHHHhh
Confidence 6543 366666665 689999999977665544
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.5e-06 Score=97.25 Aligned_cols=123 Identities=19% Similarity=0.270 Sum_probs=77.5
Q ss_pred EeCCCEEEEEcCCCCchhHHHHHhcccCCC-CccEEEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCcCCCC
Q 001511 468 VEPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 546 (1064)
Q Consensus 468 i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~~~~~ 546 (1064)
..++..+.|.||+||||||+++.+.+.+++ .+|.|..-+ +|. |.. ++.... . .
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE--------------dp~-------E~~-~~~~~~-~---i 172 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE--------------DPI-------EYV-HRNKRS-L---I 172 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc--------------CCh-------hhh-ccCccc-e---E
Confidence 457899999999999999999999997763 456654322 110 000 000000 0 0
Q ss_pred CHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCc
Q 001511 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 626 (1064)
Q Consensus 547 ~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~ 626 (1064)
. -..+|.. ..+ ---+++++|-.+|+++++||+. |.++....++.. ..|.
T Consensus 173 ~-------q~evg~~----------------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa-~tGh 221 (343)
T TIGR01420 173 N-------QREVGLD----------------TLS----FANALRAALREDPDVILIGEMR---DLETVELALTAA-ETGH 221 (343)
T ss_pred E-------ccccCCC----------------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHHH-HcCC
Confidence 0 0000000 001 1234778899999999999997 888877666653 4589
Q ss_pred EEEEEccChhHHHhcCEEEEE
Q 001511 627 SCITISHRPALVAFHDVVLSL 647 (1064)
Q Consensus 627 TvI~ItH~l~~i~~~D~Il~l 647 (1064)
+++.+.|..+.....+|++.+
T Consensus 222 ~v~~T~Ha~~~~~~~~Rl~~~ 242 (343)
T TIGR01420 222 LVFGTLHTNSAAQTIERIIDV 242 (343)
T ss_pred cEEEEEcCCCHHHHHHHHHHh
Confidence 999999988877666665544
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.5e-05 Score=94.41 Aligned_cols=226 Identities=16% Similarity=0.086 Sum_probs=154.0
Q ss_pred eeehhHHHHHHhhHHHHHHhhcCCceehhHhh-cCHHHHHHHHHHHHHHhhhHHHHhhH----HHHHHHHHHHHHHHHHH
Q 001511 760 QLLAVAFLVVSRTWISDRIASLNGTTVKYVLE-QDKASFVRLIGVSVLQSAASSFIAPS----IRHLTARLALGWRIRMT 834 (1064)
Q Consensus 760 ~lv~c~~~lv~Rt~ls~~va~l~g~~v~~iv~-~~~~~F~~~l~~~~~~~~pas~~n~~----l~~~~~~l~l~~R~rLt 834 (1064)
.+....++.+.-+.+.+.+..+-|.++..++. ++...|...+...+++++..++++.. ..+...++..++|.++.
T Consensus 162 ~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~ 241 (711)
T TIGR00958 162 WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLF 241 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888888888888888874 46667766555444444434444332 23455566666777766
Q ss_pred HHHHHHhcCCCCceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHHHHHhhCCchhHHHHHHHHH
Q 001511 835 QHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLL 914 (1064)
Q Consensus 835 ~~~~~~Yl~~~~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~ 914 (1064)
+++.+. +..||+ +.+..+.-+|+|+|++...+.+++-...++..++-++.+..-+.. +.+.-..++.....+
T Consensus 242 ~~ll~~---~~~~f~----~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~-~s~~l~l~~l~~~~l 313 (711)
T TIGR00958 242 RSLLRQ---DLGFFD----ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLW-LSPRLTMVTLINLPL 313 (711)
T ss_pred HHHHcC---CHHHHc----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHH
Confidence 666653 334443 233456778999999999988877666666555555444443333 222323333444445
Q ss_pred HHHHHHhcCCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001511 915 GLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDD 993 (1064)
Q Consensus 915 ~~~~lr~~~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~ 993 (1064)
...+.+.+.+...++..+.++.++++...-...+.+.++|--|++++.|....++..+++.+...+..+....+..+.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (711)
T TIGR00958 314 VFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTS 392 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777778889999999999999999999999999999999999999999998888887776665555554444444
|
|
| >PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00018 Score=80.34 Aligned_cols=221 Identities=14% Similarity=0.142 Sum_probs=155.5
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeccCCCCCCCCcchhhhHHHHH
Q 001511 793 DKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLT 872 (1064)
Q Consensus 793 ~~~~F~~~l~~~~~~~~pas~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~~~~Y~~~~l~~~i~n~dq~it~Dv~~f~ 872 (1064)
+...|-..+..++.+|.|.-++.....|..+..-.+||+-+|+|..+.+=+ ++ .|+.+.|||-+|.-|||
T Consensus 51 t~~ef~~~~~~f~~ia~~~v~~~v~~~ff~shyiFrWR~Am~~yY~~~W~~---------~r-~IEGASQRIQEDtmrfa 120 (315)
T PF05992_consen 51 TIDEFYAQILNFLWIAMIYVVLAVLNSFFVSHYIFRWRTAMNEYYMSHWPK---------LR-HIEGASQRIQEDTMRFA 120 (315)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---------hc-cCccHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999998876522 22 38999999999999999
Q ss_pred hHHHhhhhccchhhHHHHHHHHHHHHh---hCC-------ch--hHHHHHHHHHHHHHHHhcCCccchhcHHHHhhccch
Q 001511 873 TDLSGLVTGMVKPSVDILWFTWRMKAL---TGQ-------RG--VAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTF 940 (1064)
Q Consensus 873 ~~~a~lys~~~KP~lDi~~~~~~l~~~---~g~-------~g--~~~~~~~~~~~~~~lr~~~p~fg~l~a~e~~leG~~ 940 (1064)
+-+-+|--++++-++-.+-|.--|... +.. .+ ....+.+.++++.++=.++-+.=.|--.-|+.|..|
T Consensus 121 ~i~E~Lgv~~i~simtliaFlPiL~~lS~~V~~lp~~g~i~~~Lv~~ai~~s~~gt~~l~~vGikLPgLe~~nQkvEAAy 200 (315)
T PF05992_consen 121 KIMEDLGVSFIRSIMTLIAFLPILWELSSHVSELPFFGEIPHSLVWAAIIWSLFGTILLAFVGIKLPGLEFNNQKVEAAY 200 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcccCCCchHHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHH
Confidence 999999999999999999887655544 331 11 123456666666777788888888999999999999
Q ss_pred hhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHHHHHHHhhhcCCcc
Q 001511 941 RFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKGDRA 1020 (1064)
Q Consensus 941 R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~~~~~~~~~~~~~~~~ 1020 (1064)
|-- |+ -+|+= .+..+-.++.+.|.++-+.=.+.+..-.++.+.-.+. -++..+++|.++.+..+. +.-
T Consensus 201 RKe---LV-~gED~----~~ra~~~tl~eLF~~Vr~Ny~rly~hy~yfni~~~~y-~q~~~i~~~i~l~Psi~a---g~i 268 (315)
T PF05992_consen 201 RKE---LV-YGEDD----ANRAQPPTLRELFSNVRRNYFRLYFHYMYFNIARISY-LQFDVIFPYIILIPSIVA---GAI 268 (315)
T ss_pred HHH---HH-hcCcc----cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh---ccc
Confidence 983 22 23322 1222334555555554444444444444444444433 445556799998888886 223
Q ss_pred ccchhHHHHHHHhHH
Q 001511 1021 LVSTQGEIRMIMNLI 1035 (1064)
Q Consensus 1021 ~~~~~~~~~~~~~~~ 1035 (1064)
.++.=-++...+...
T Consensus 269 TLG~~~Qi~~aF~~V 283 (315)
T PF05992_consen 269 TLGVLQQISNAFGQV 283 (315)
T ss_pred cHHHHHHHHHHHHHH
Confidence 333323444444443
|
meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=2e-06 Score=91.45 Aligned_cols=28 Identities=36% Similarity=0.621 Sum_probs=26.6
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcccCC
Q 001511 469 EPGSNLLITGPNGSGKSSLFRVLGGLWP 496 (1064)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~ 496 (1064)
++|++++|+||||||||||++.|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999885
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.8e-07 Score=112.52 Aligned_cols=153 Identities=14% Similarity=0.202 Sum_probs=89.6
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHh--cccCCCCccEEEeCCCC--ccc---cccEEEEecCCCCCcccHHHHhcCCCCC
Q 001511 467 KVEPGSNLLITGPNGSGKSSLFRVL--GGLWPLVSGHIAKPGVG--SDL---NKEIFYVPQRPYTAVGTLRDQLIYPLTS 539 (1064)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL--~Gl~~p~~G~I~i~g~~--~~l---r~~i~~v~Q~p~l~~~Ti~eni~~~~~~ 539 (1064)
-+++|..+.|.||+|||||||..-. .|...+.+..+.+.... +++ .+.+|+-.|+..- . +++.+...
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~-~----g~l~~~~~- 90 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVD-E----GKLFILDA- 90 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhh-c----CceEEEec-
Confidence 4789999999999999999999865 45554444555443321 111 1233333332210 0 01111000
Q ss_pred CCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHH--HHHccCCCEEEEeCCCCCCCHHHHHHH
Q 001511 540 DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMA--RLFYHKPKFAILDECTSAVTTDMEERF 617 (1064)
Q Consensus 540 ~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIA--RAL~~~P~iliLDEPTSaLD~~~~~~l 617 (1064)
.........++.+++.++.++.+ ..+|+||+|||.|+ .+|..+|+.. ...++.+
T Consensus 91 ------~~~~~~~~~~~~~~l~~~l~~i~--------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l 146 (484)
T TIGR02655 91 ------SPDPEGQDVVGGFDLSALIERIN--------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREI 146 (484)
T ss_pred ------CchhccccccccCCHHHHHHHHH--------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHH
Confidence 00001112345556666666655 37999999999999 6666665543 3444444
Q ss_pred HH---HHHhcCcEEEEEccChhH--------H-H-hcCEEEEEeC
Q 001511 618 CA---KVRAMGTSCITISHRPAL--------V-A-FHDVVLSLDG 649 (1064)
Q Consensus 618 ~~---~l~~~g~TvI~ItH~l~~--------i-~-~~D~Il~l~~ 649 (1064)
.+ .+++.|+|+|+++|+.+. + . .+|.|+.|+.
T Consensus 147 ~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~~ 191 (484)
T TIGR02655 147 FRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 191 (484)
T ss_pred HHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEEE
Confidence 44 445679999999998753 1 2 4789998873
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.9e-06 Score=113.15 Aligned_cols=61 Identities=23% Similarity=0.285 Sum_probs=55.1
Q ss_pred CCCcChHHHHHHH----HHHH--------HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChh
Q 001511 576 GDELSLGEQQRLG----MARL--------FYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPA 636 (1064)
Q Consensus 576 g~~LSGGqrQRla----IARA--------L~~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~ 636 (1064)
...||||||||++ +|++ +..+|++++|||||++||+.+...+++++.+.|.++|++||++-
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTSEREW 1317 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEccchh
Confidence 4689999999996 6765 55799999999999999999999999999999999999999863
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.7e-06 Score=100.20 Aligned_cols=103 Identities=20% Similarity=0.155 Sum_probs=69.8
Q ss_pred CCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCC-CccEEEeCCCC---------ccc---cccEEEE-----
Q 001511 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPL-VSGHIAKPGVG---------SDL---NKEIFYV----- 518 (1064)
Q Consensus 457 ~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p-~~G~I~i~g~~---------~~l---r~~i~~v----- 518 (1064)
+..+++++ |++.+||+++|+|+||||||||+++|+|+.++ +.|.|.+.|.. ..+ ..+.+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 45689998 99999999999999999999999999999854 45677765522 111 1235555
Q ss_pred ecCCCC---Cc---ccHHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCCh
Q 001511 519 PQRPYT---AV---GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 561 (1064)
Q Consensus 519 ~Q~p~l---~~---~Ti~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~ 561 (1064)
+|+|.. +. .++.|.+..... +......+..+..++++.+++.
T Consensus 230 ~q~p~~rlnp~~va~~IAE~~r~~g~-~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 230 DQSSQLRLNAAYVGTAIAEYFRDQGK-TVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCHHHHhhHHHHHHHHHHHHHHcCC-CcchhhhHHHHHHHHHHHhCcC
Confidence 998853 22 255565543211 1001123457888999999993
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.6e-06 Score=105.94 Aligned_cols=76 Identities=24% Similarity=0.251 Sum_probs=65.3
Q ss_pred CCCcChHHHHHHHHHHHH------ccC--CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEccChhHHHhcCEE
Q 001511 576 GDELSLGEQQRLGMARLF------YHK--PKFAILDECTSAVTTDMEERFCAKVRA---MGTSCITISHRPALVAFHDVV 644 (1064)
Q Consensus 576 g~~LSGGqrQRlaIARAL------~~~--P~iliLDEPTSaLD~~~~~~l~~~l~~---~g~TvI~ItH~l~~i~~~D~I 644 (1064)
...|||||+=.++||-+| ..+ -++++|||||..||++....+.+.+.+ .+.+||+|||+.++...+|++
T Consensus 813 ~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~~ 892 (908)
T COG0419 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVR 892 (908)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCeE
Confidence 458999999877776655 456 699999999999999999998887764 479999999999999999999
Q ss_pred EEEeCCC
Q 001511 645 LSLDGEG 651 (1064)
Q Consensus 645 l~l~~~g 651 (1064)
+.+..++
T Consensus 893 i~V~k~~ 899 (908)
T COG0419 893 IRVKKDG 899 (908)
T ss_pred EEEEecC
Confidence 9998654
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.1e-06 Score=98.49 Aligned_cols=78 Identities=14% Similarity=0.101 Sum_probs=59.0
Q ss_pred CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCC---C------c------cccccEEEEec
Q 001511 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV---G------S------DLNKEIFYVPQ 520 (1064)
Q Consensus 456 ~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~---~------~------~lr~~i~~v~Q 520 (1064)
.+..+++++ |++.+||+++|+|+||||||||+++|+|+.+++.+.+-..|. + . ..|..+++++|
T Consensus 141 TGi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 141 VGVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred cceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 456899999 999999999999999999999999999999988644332232 1 0 12457999999
Q ss_pred CCCCC-cccHHHHhc
Q 001511 521 RPYTA-VGTLRDQLI 534 (1064)
Q Consensus 521 ~p~l~-~~Ti~eni~ 534 (1064)
+...+ ..++.++..
T Consensus 220 d~s~~~rl~a~e~a~ 234 (434)
T PRK07196 220 DESPLMRIKATELCH 234 (434)
T ss_pred CCChhhhHHHHHHHH
Confidence 87544 345555554
|
|
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.1e-05 Score=98.18 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=44.3
Q ss_pred HHHHHccCCCEEEEeCCCCCC-CHHHHHHHHHHH---HhcCcEEEEEccChhHHHh
Q 001511 589 MARLFYHKPKFAILDECTSAV-TTDMEERFCAKV---RAMGTSCITISHRPALVAF 640 (1064)
Q Consensus 589 IARAL~~~P~iliLDEPTSaL-D~~~~~~l~~~l---~~~g~TvI~ItH~l~~i~~ 640 (1064)
|+|++..+|+++++|||+.+| |+...+.+.+.+ ++.|.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 688899999999999999999 688877776655 4568999999999998754
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.4e-06 Score=96.82 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=63.0
Q ss_pred eeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCCC---ccccccEEEEecCCCCCcccHHHHhcCC
Q 001511 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG---SDLNKEIFYVPQRPYTAVGTLRDQLIYP 536 (1064)
Q Consensus 460 ~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~~---~~lr~~i~~v~Q~p~l~~~Ti~eni~~~ 536 (1064)
-++.+.-.+++|++++|+|+||+|||||++.|+|..++..|+|.+++.. ...++++++++|+.++++.....++.+.
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~~~l~ 263 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRELQLW 263 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhhhccc
Confidence 3566666788999999999999999999999999999999999987632 2335689999999988876666666554
|
|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.4e-05 Score=92.43 Aligned_cols=69 Identities=12% Similarity=0.141 Sum_probs=58.0
Q ss_pred CcChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEccChhHHHhcCEEEEEe
Q 001511 578 ELSLGEQQRLGMARLFY---------HKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLD 648 (1064)
Q Consensus 578 ~LSGGqrQRlaIARAL~---------~~P~iliLDEPTSaLD~~~~~~l~~~l~~~g~TvI~ItH~l~~i~~~D~Il~l~ 648 (1064)
-+|+|||+++++|+.|+ .+|++++||||++.||......+.+.+.+...++|..|+ ...-+|+++.++
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~q~~it~t~---~~~~~~~~~~~~ 339 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLPQAIVAGTE---APPGAALTLRIE 339 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCCcEEEEcCC---CCCCCceEEEEe
Confidence 58999999999999998 899999999999999999999999988655455555554 334578999997
Q ss_pred C
Q 001511 649 G 649 (1064)
Q Consensus 649 ~ 649 (1064)
+
T Consensus 340 ~ 340 (349)
T PRK14079 340 A 340 (349)
T ss_pred c
Confidence 6
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.1e-05 Score=93.29 Aligned_cols=67 Identities=22% Similarity=0.177 Sum_probs=45.9
Q ss_pred eCCCEEEEEcCCCCchhHHHHHhcccCCC--Cc-cEEEeCCCC-----ccccccEEEEecCCC-----CCcccHHHHhcC
Q 001511 469 EPGSNLLITGPNGSGKSSLFRVLGGLWPL--VS-GHIAKPGVG-----SDLNKEIFYVPQRPY-----TAVGTLRDQLIY 535 (1064)
Q Consensus 469 ~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p--~~-G~I~i~g~~-----~~lr~~i~~v~Q~p~-----l~~~Ti~eni~~ 535 (1064)
++|..++|+||+||||||++++|++.+.+ .+ +.|.....+ ...+...+.++|... .|...+++.+..
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~ 211 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRR 211 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhcc
Confidence 58999999999999999999999999843 33 355443322 123344678888643 344567776653
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00026 Score=87.14 Aligned_cols=246 Identities=12% Similarity=0.059 Sum_probs=151.3
Q ss_pred hHHHHHHhhHHHHHHhhcCCceehhHhhcCHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001511 764 VAFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLR 843 (1064)
Q Consensus 764 c~~~lv~Rt~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~~~~~~~pas~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~ 843 (1064)
+.++.++-..+.+.++..-+.++...+........ ..+.+..+-+.++..+++|..+.+.-++..++...+.+.+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 95 (571)
T TIGR02203 19 AGVAMILVAATESTLAALLKPLLDDGFGGRDRSVL---WWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFE 95 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333344333333322222 212222223345555666665555554444444433333332
Q ss_pred CCCceEEeccCC-CCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhc
Q 001511 844 KNSFYKVFNMSS-KSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSV 922 (1064)
Q Consensus 844 ~~~~Y~~~~l~~-~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~~~~~lr~~ 922 (1064)
+..--....+++ ...+.-+++++|++++.+.+++....+.-.++.++++..-+... ++.-..++.+...+...+...+
T Consensus 96 ~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~~l~~i~l~~~~l~~~~~~~~ 174 (571)
T TIGR02203 96 KLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYY-SWQLTLIVVVMLPVLSILMRRV 174 (571)
T ss_pred HHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHH
Confidence 111001111111 13446689999999999999888888877777777766655543 2222333334444555566777
Q ss_pred CCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhh
Q 001511 923 TPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHN 1002 (1064)
Q Consensus 923 ~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~ 1002 (1064)
.++..+...+.++.++++...-.....+.++|--|++.+.+....++.+++..+...+..+...+...+.+++. ++..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 253 (571)
T TIGR02203 175 SKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIA-SLALA 253 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 88888999999999999999999999999999999999999999999999999888888887777776666553 34444
Q ss_pred hhhHHHHHHHhh
Q 001511 1003 VTWGLSLLYAME 1014 (1064)
Q Consensus 1003 vg~~~~~~~~~~ 1014 (1064)
+.+.+..+.++.
T Consensus 254 ~~~~~g~~~~~~ 265 (571)
T TIGR02203 254 VVLFIALFQAQA 265 (571)
T ss_pred HHHHHHHHHHHc
Confidence 455555555553
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.91 E-value=9.8e-05 Score=85.79 Aligned_cols=164 Identities=23% Similarity=0.356 Sum_probs=109.0
Q ss_pred eEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhc-ccCCCCccEEEeCCCCccccccEEEEecCCCCCccc
Q 001511 450 VKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLG-GLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGT 528 (1064)
Q Consensus 450 vs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~-Gl~~p~~G~I~i~g~~~~lr~~i~~v~Q~p~l~~~T 528 (1064)
|++..|++. .+.+ +-|++| ++.|+|.+=-||||||++|. |.|+---| ||. . ||=-++..
T Consensus 227 ve~~LP~~g-~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGR-----E---~VVT~~~a---- 286 (448)
T PF09818_consen 227 VEIELPNGG-TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGR-----E---FVVTDPDA---- 286 (448)
T ss_pred EEEECCCCC-EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCc-----e---EEEECCCc----
Confidence 555555432 2333 458899 99999999999999999985 56653222 221 1 11111110
Q ss_pred HHHHhcCCCCCCCcCCCCCHHHHHHHHHhcCChhHHhcCCCCcccCC--CCCcChHHHHHHHHHHHHccCCCEEEEeCCC
Q 001511 529 LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINW--GDELSLGEQQRLGMARLFYHKPKFAILDECT 606 (1064)
Q Consensus 529 i~eni~~~~~~~~~~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~--g~~LSGGqrQRlaIARAL~~~P~iliLDEPT 606 (1064)
+.. .. + |. .....+++..|++.+|.+..+.. -.+=||-.-|=-.|..||=..+++||+||=|
T Consensus 287 ----vki-rA-------E-DG---R~V~~vDISpFI~~LP~g~dT~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDt 350 (448)
T PF09818_consen 287 ----VKI-RA-------E-DG---RSVEGVDISPFINNLPGGKDTTCFSTENASGSTSQAANIMEALEAGARLLLIDEDT 350 (448)
T ss_pred ----eEE-Ee-------c-CC---ceEeCccchHHHhhCCCCCCCCcccccCCCchHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 000 00 0 00 13456789999999998765531 2467999999999999999999999999999
Q ss_pred CCC-----CHHHHHHH--------------HHHHHhcCcEEEEEccChh-HHHhcCEEEEEeC
Q 001511 607 SAV-----TTDMEERF--------------CAKVRAMGTSCITISHRPA-LVAFHDVVLSLDG 649 (1064)
Q Consensus 607 SaL-----D~~~~~~l--------------~~~l~~~g~TvI~ItH~l~-~i~~~D~Il~l~~ 649 (1064)
||- |...++.+ .++.++.|.++|+|+--.. .+..+|+|++|++
T Consensus 351 sATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~ 413 (448)
T PF09818_consen 351 SATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDE 413 (448)
T ss_pred cchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecC
Confidence 996 44444443 2233456888777776554 5678999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=97.91 E-value=2e-05 Score=92.66 Aligned_cols=67 Identities=25% Similarity=0.260 Sum_probs=55.8
Q ss_pred CCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCc---cEEEeCCCC----------ccccccEEEEecCC
Q 001511 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVS---GHIAKPGVG----------SDLNKEIFYVPQRP 522 (1064)
Q Consensus 456 ~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~---G~I~i~g~~----------~~lr~~i~~v~Q~p 522 (1064)
++..+++++ +++.+||+++|+|+||+|||||+++|++...++. |.|..+|.+ ...++++++|+...
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 456899999 9999999999999999999999999999999887 888888864 11236778887654
Q ss_pred C
Q 001511 523 Y 523 (1064)
Q Consensus 523 ~ 523 (1064)
.
T Consensus 216 d 216 (428)
T PRK08149 216 D 216 (428)
T ss_pred C
Confidence 3
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.8e-05 Score=91.04 Aligned_cols=53 Identities=28% Similarity=0.291 Sum_probs=47.0
Q ss_pred cCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCC
Q 001511 454 TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV 507 (1064)
Q Consensus 454 y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~ 507 (1064)
+..+..+++++ +.+.+||+++|+|+||+|||||++.|+|..+++.|.+...|.
T Consensus 147 l~TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~ 199 (440)
T TIGR01026 147 LSTGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGE 199 (440)
T ss_pred ccceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEee
Confidence 34466899999 999999999999999999999999999999999887766554
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00068 Score=83.97 Aligned_cols=242 Identities=10% Similarity=-0.019 Sum_probs=151.3
Q ss_pred HHHHHHhhHHHHHHhhcCCceehhHhhcCHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001511 765 AFLVVSRTWISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRK 844 (1064)
Q Consensus 765 ~~~lv~Rt~ls~~va~l~g~~v~~iv~~~~~~F~~~l~~~~~~~~pas~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~ 844 (1064)
.++.++-..+++...-+-+.++..++.+ ..+...++.|+++.+...+..-...+...+++-.+|.++.+.+++..++.
T Consensus 25 ~~~~i~~~~~~~~~~~~~~~iid~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 102 (588)
T PRK13657 25 AVANVLLAAATFAEPILFGRIIDAISGK--GDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQL 102 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333444455555444444455545443 22333344444444433334444455556677777777777666666653
Q ss_pred -CCceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhcC
Q 001511 845 -NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVT 923 (1064)
Q Consensus 845 -~~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~~~~~lr~~~ 923 (1064)
..++. + .+..+.-+++++|++.+.+...+.+.+++-.++.+++...-+...-. .-.+++.+.+.+...+.+.+.
T Consensus 103 ~~~~~~--~--~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~l~~l~~~~l~~~i~~~~~ 177 (588)
T PRK13657 103 PLAWHS--Q--RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNW-RLSLVLVVLGIVYTLITTLVM 177 (588)
T ss_pred CHHHHC--c--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 22322 1 23355778899999988766665555555555554444333322221 122223333344455677778
Q ss_pred CccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Q 001511 924 PEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNV 1003 (1064)
Q Consensus 924 p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~v 1003 (1064)
|...++..+.++..+++.......+.+.++|.-|+..+.|....++.++++.+......+...+...+.++ +.++..++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 256 (588)
T PRK13657 178 RKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRA-ASTITMLA 256 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 88888888888888999999999999999999999999999999999999999888877777777777664 35555555
Q ss_pred hhHHHHHHHhh
Q 001511 1004 TWGLSLLYAME 1014 (1064)
Q Consensus 1004 g~~~~~~~~~~ 1014 (1064)
.+.+.++.++.
T Consensus 257 ~~~~g~~~v~~ 267 (588)
T PRK13657 257 ILVLGAALVQK 267 (588)
T ss_pred HHHHHHHHHHc
Confidence 55555555554
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.001 Score=82.01 Aligned_cols=245 Identities=9% Similarity=-0.014 Sum_probs=145.0
Q ss_pred hHHHHHHhhHHHHHHhhcCCceehhHh-hcCHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001511 764 VAFLVVSRTWISDRIASLNGTTVKYVL-EQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYL 842 (1064)
Q Consensus 764 c~~~lv~Rt~ls~~va~l~g~~v~~iv-~~~~~~F~~~l~~~~~~~~pas~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl 842 (1064)
..++.+.-..+.+.+.-+-+.++..++ ..+...|...+...+++.+...+.+-.-.|+..+++-++..+|...+++..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~ 102 (576)
T TIGR02204 23 ALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLI 102 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666666666666666665544 4444445444443333333333333333455666655555556666666555
Q ss_pred CC-CCceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHh
Q 001511 843 RK-NSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRS 921 (1064)
Q Consensus 843 ~~-~~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~~~~~lr~ 921 (1064)
+. ..||.-. ...+--.++++|++...+-+.+.+..++.-++-++.+..-+...-.+-+.. +.....+...+...
T Consensus 103 ~~~~~~~~~~----~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~l~~~~~~~ 177 (576)
T TIGR02204 103 SLSPSFFDKN----RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSL-VLLAVPLVLLPILL 177 (576)
T ss_pred cCCHHHHccC----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHH
Confidence 53 2333211 122334678889988876666655555444444444333332222222222 22333334445666
Q ss_pred cCCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhh
Q 001511 922 VTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPH 1001 (1064)
Q Consensus 922 ~~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~ 1001 (1064)
..++..++..+.++.+++++......+.+.|+|..|+..+.+....++.+++..+...+..+...+...+-+++. ++..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 256 (576)
T TIGR02204 178 FGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLV-FGAI 256 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 778889999999999999999999999999999999999999999999999888776666655555555444332 2333
Q ss_pred hhhhHHHHHHHhh
Q 001511 1002 NVTWGLSLLYAME 1014 (1064)
Q Consensus 1002 ~vg~~~~~~~~~~ 1014 (1064)
++.+.+....++.
T Consensus 257 ~~~~~~g~~~v~~ 269 (576)
T TIGR02204 257 VGVLWVGAHDVIA 269 (576)
T ss_pred HHHHHHHHHHHHc
Confidence 3334444444443
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.7e-05 Score=93.26 Aligned_cols=64 Identities=19% Similarity=0.134 Sum_probs=57.0
Q ss_pred CcEEEEeeEEEcCCCCeeeeeceEEEeCCCEEEEEcCCCCchhHHHHHhcccCCCCccEEEeCCC
Q 001511 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV 507 (1064)
Q Consensus 443 ~~i~~~nvs~~y~~~~~~L~~vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~I~i~g~ 507 (1064)
+.++.++++..+..+..+++++ +++.+||+++|+|+||+|||||++.|+|+..++.|.+.+.|.
T Consensus 128 ~~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGe 191 (433)
T PRK07594 128 PAMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE 191 (433)
T ss_pred CceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECC
Confidence 3567778877777778899999 999999999999999999999999999999999998877664
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.1e-05 Score=100.04 Aligned_cols=43 Identities=23% Similarity=0.198 Sum_probs=35.5
Q ss_pred ceEEEeCCCEEEEEcCCCCchhHHHHHhcccC-CCCccEEEeCC
Q 001511 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW-PLVSGHIAKPG 506 (1064)
Q Consensus 464 vsl~i~~Ge~vaIvG~sGsGKSTLl~lL~Gl~-~p~~G~I~i~g 506 (1064)
++++.+++++++|+|++|+|||||++.+.+.+ +..+|.+.+++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 46677889999999999999999999996544 45588888765
|
syringae 6; Provisional |
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.1e-05 Score=94.77 Aligned_cols=109 Identities=12% Similarity=0.144 Sum_probs=70.3
Q ss_pred CCEEEEEcCCCCchhHHHHHhcccCCCCccE--------EEeCCCCccccccEEEEecCCCCCcccHHHHhcCCCCCCCc
Q 001511 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGH--------IAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE 542 (1064)
Q Consensus 471 Ge~vaIvG~sGsGKSTLl~lL~Gl~~p~~G~--------I~i~g~~~~lr~~i~~v~Q~p~l~~~Ti~eni~~~~~~~~~ 542 (1064)
.+.++|+||+|||||||++++.++..+..|+ +.++|.+ + ..++ ..+ .|-.++...
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~------l---~~d~----~~i-~~~llg~~~--- 237 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT------L---RWDP----REV-TNPLLGSVH--- 237 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh------c---cCCH----HHH-hHHhcCCcc---
Confidence 4569999999999999999999988655443 4554421 0 0000 001 111222110
Q ss_pred CCCCCHHHHHHHHHhcCChhHHhcCCCCcccCCCCCcChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001511 543 VEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 622 (1064)
Q Consensus 543 ~~~~~~~~i~~~l~~~~L~~~~~~~p~~~~~~~g~~LSGGqrQRlaIARAL~~~P~iliLDEPTSaLD~~~~~~l~~~l~ 622 (1064)
....+...+.++..|+.+...+.. .++||| +|+||| +..||+..+..+.+.++
T Consensus 238 --~~~~~~a~~~l~~~gl~~~~~g~v--------~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le 290 (615)
T TIGR02903 238 --DPIYQGARRDLAETGVPEPKTGLV--------TDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLE 290 (615)
T ss_pred --HHHHHHHHHHHHHcCCCchhcCch--------hhcCCC----------------eEEEec-cccCCHHHHHHHHHHHh
Confidence 011223445677778766555544 378888 999999 79999999999999887
Q ss_pred h
Q 001511 623 A 623 (1064)
Q Consensus 623 ~ 623 (1064)
+
T Consensus 291 ~ 291 (615)
T TIGR02903 291 D 291 (615)
T ss_pred h
Confidence 5
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00043 Score=74.33 Aligned_cols=238 Identities=14% Similarity=0.131 Sum_probs=157.6
Q ss_pred HHHHhhHHHHHHhhcCCceehhHhhcCHH--HHHHHHHHHH-HHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001511 767 LVVSRTWISDRIASLNGTTVKYVLEQDKA--SFVRLIGVSV-LQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLR 843 (1064)
Q Consensus 767 ~lv~Rt~ls~~va~l~g~~v~~iv~~~~~--~F~~~l~~~~-~~~~pas~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~ 843 (1064)
+.+.-+.+++...-+-+.++..+..++.. .....+...+ ++.+-.+.......|...+...+.|.++.+.+++..++
T Consensus 7 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 86 (275)
T PF00664_consen 7 LSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLR 86 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555566655555432 2222222111 12222333444445556778888888888888877776
Q ss_pred CC-CceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhc
Q 001511 844 KN-SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSV 922 (1064)
Q Consensus 844 ~~-~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~~~~~lr~~ 922 (1064)
-. .||+ +....+-=.++|+|+++..+.+.+....+..+++-++....-+ -..++.-..++.....+...+.+.+
T Consensus 87 ~~~~~~~----~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~l~~l~~~~~~~~~~~~~ 161 (275)
T PF00664_consen 87 LPYSYFD----KNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILL-FFISWKLALILLIILPLLFLISFIF 161 (275)
T ss_dssp SHHHHHH----HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhh----hhcccccccccccccccccccccccccccccccchhhhhhhcc-cccccccccccchhhhhhHhhhhhh
Confidence 33 3331 1112334578999999999999999999998888665554433 4456666666666666667777778
Q ss_pred CCccchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhh
Q 001511 923 TPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHN 1002 (1064)
Q Consensus 923 ~p~fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~ 1002 (1064)
.+...+...++++..+++-..=...+.+.++|=-|+.++.|.+..++..++..+...+..+...+...+-+++ -++..+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 240 (275)
T PF00664_consen 162 SKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFI-SYLSIV 240 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred ccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 8888889989999888887777888999999999999999999999999998888877777766666666654 334333
Q ss_pred hhhHHHHH
Q 001511 1003 VTWGLSLL 1010 (1064)
Q Consensus 1003 vg~~~~~~ 1010 (1064)
+.+.+...
T Consensus 241 ~~~~~g~~ 248 (275)
T PF00664_consen 241 LILIFGAY 248 (275)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0016 Score=79.48 Aligned_cols=239 Identities=12% Similarity=0.030 Sum_probs=144.0
Q ss_pred HHhhHHHHHHhhcCCceehhHh-h-cCHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C
Q 001511 769 VSRTWISDRIASLNGTTVKYVL-E-QDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRK-N 845 (1064)
Q Consensus 769 v~Rt~ls~~va~l~g~~v~~iv-~-~~~~~F~~~l~~~~~~~~pas~~n~~l~~~~~~l~l~~R~rLt~~~~~~Yl~~-~ 845 (1064)
+.=+.+++....+-|.++..+. . .+...+...++.++++++..++++..-+|+..+++.++..+|.+.+++..++- .
T Consensus 13 ~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~ 92 (529)
T TIGR02857 13 ALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGP 92 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 4444555555555556665553 2 23444554444444454444555555566666677766666766677766653 3
Q ss_pred CceEEeccCCCCCCCCcchhhhHHHHHhHHHhhhhccchhhHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhcCCc
Q 001511 846 SFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPE 925 (1064)
Q Consensus 846 ~~Y~~~~l~~~i~n~dq~it~Dv~~f~~~~a~lys~~~KP~lDi~~~~~~l~~~~g~~g~~~~~~~~~~~~~~lr~~~p~ 925 (1064)
.||. +....+.-.++++|+++..+.+++....+..-++-++++..-+.. ..+....++...+.+...+.....+.
T Consensus 93 ~~~~----~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~~~~l~~~~l~~~~~~~~~~~ 167 (529)
T TIGR02857 93 GWLQ----GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFP-ADWISGLILLLTAPLIPIFMILIGWA 167 (529)
T ss_pred hhhc----cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 123345667889999998877665444444333333333222221 12222222222222333334455666
Q ss_pred cchhcHHHHhhccchhhhhhhhhhcchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhh
Q 001511 926 FGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQLPHNVTW 1005 (1064)
Q Consensus 926 fg~l~a~e~~leG~~R~~hsrli~~aEeiAFy~G~~~E~~~~~~~~~~l~~h~~~~~~~r~~~~~~~~~~~Ky~~~~vg~ 1005 (1064)
..+...++++.++++-..-...+.+.|+|--|+..+.|....++..+++.++..+..+...+.+.+-+++ -+++.++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 246 (529)
T TIGR02857 168 AQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELF-ATLSVALVA 246 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 6777778888888888888888999999999999999999999999998888877777776666666644 344444433
Q ss_pred HHHHHHHh
Q 001511 1006 GLSLLYAM 1013 (1064)
Q Consensus 1006 ~~~~~~~~ 1013 (1064)
.+..+.++
T Consensus 247 ~~~~~~~~ 254 (529)
T TIGR02857 247 VYIGFRLL 254 (529)
T ss_pred HHHHHHHH
Confidence 44444444
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=97.78 E-value=1e-05 Score=87.77 Aligned_cols=40 Identities=18% Similarity=0.097 Sum_probs=29.6
Q ss_pred EEeCCCEEEEEcCCCCchhHHHHHhc-ccCCCCccEEEeCC
Q 001511 467 KVEPGSNLLITGPNGSGKSSLFRVLG-GLWPLVSGHIAKPG 506 (1064)
Q Consensus 467 ~i~~Ge~vaIvG~sGsGKSTLl~lL~-Gl~~p~~G~I~i~g 506 (1064)
-+++|+.++|.||+|||||||...++ ....+.++.+.+..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 48899999999999999999988654 22344444555544
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1064 | ||||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-14 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-13 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-13 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-13 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-12 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-11 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-10 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-10 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 3e-10 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 7e-10 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 8e-10 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-09 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-09 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-09 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-09 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 3e-09 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-09 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-09 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 5e-09 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 5e-09 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-09 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-08 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-08 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 1e-08 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-08 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-08 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 4e-08 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 4e-08 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 4e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 8e-08 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 8e-08 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-07 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 4e-07 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 5e-07 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 7e-07 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-06 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 4e-06 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 7e-06 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 1e-05 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-05 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-05 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-05 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-05 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-05 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-05 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-05 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 4e-05 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 4e-05 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 4e-05 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 8e-05 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 8e-05 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-05 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-04 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-04 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-04 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-04 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 4e-04 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 7e-04 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 8e-04 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 9e-04 |
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1064 | |||
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-19 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-13 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 6e-19 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-15 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-18 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 7e-18 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 8e-18 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-15 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-17 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 7e-16 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-17 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 5e-15 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 7e-15 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 4e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-14 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 2e-14 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-14 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 4e-13 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-13 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 5e-13 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-12 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-12 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-11 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-11 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 5e-11 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 9e-11 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 9e-11 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 3e-10 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-10 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 5e-10 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 7e-10 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-09 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 3e-09 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 4e-09 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 8e-09 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-08 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 3e-08 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 3e-08 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 3e-08 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 4e-08 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 7e-08 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 7e-08 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 4e-07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-04 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 8e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 3e-04 |
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 2e-19
Identities = 63/319 (19%), Positives = 107/319 (33%), Gaps = 75/319 (23%)
Query: 373 AKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHEL-MVISRELSIEDKSPQ 431
AK + L + VI+ L L D IH + S +
Sbjct: 178 AKAIRELLKNKYVIVV-----------DHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAA 226
Query: 432 RNGSRNY----------------------------FSEANYIEFSGVKVVTPTGNVLVEN 463
R G N+ S+ + K++ G+ +
Sbjct: 227 RVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVV 286
Query: 464 LTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR-- 521
+ + G + I GPNG GK++ R+L G G + + + Y PQR
Sbjct: 287 DNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------QILSYKPQRIF 340
Query: 522 --PYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE 578
V L + L++ E+ K ++L LL+ ++
Sbjct: 341 PNYDGTVQQYLENASKDALSTSSWF-------FEEVTKRLNLHRLLESNV--------ND 385
Query: 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF-CAKV-----RAMGTSCITIS 632
LS GE Q+L +A + +LD+ +S + D+EER+ AK R I
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYL--DVEERYIVAKAIKRVTRERKAVTFIID 443
Query: 633 HRPALVAFH-DVVLSLDGE 650
H ++ + D ++ GE
Sbjct: 444 HDLSIHDYIADRIIVFKGE 462
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 2e-13
Identities = 36/204 (17%), Positives = 80/204 (39%), Gaps = 33/204 (16%)
Query: 468 VEPGSNLLITGPNGSGKSSLFRVL-GGLWPLVSGHIAKPGVGSDLNK----EIFYVPQRP 522
+ + L + G NG GK+++ ++L G + P +K G L + EI+ +
Sbjct: 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81
Query: 523 YTAVGTLRDQLIYPLTSDQEVEPLTHGGM---------VELLKNVDLEYLLDRYPPEKEI 573
Y+ + ++ Y + + ++ + + E+ + +++ L ++
Sbjct: 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDA----- 136
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM------GTS 627
+ LS G QRL +A + I D+ +S + D+ ER +
Sbjct: 137 ---NILSGGGLQRLLVAASLLREADVYIFDQPSSYL--DVRER--MNMAKAIRELLKNKY 189
Query: 628 CITISHRPALVA-FHDVVLSLDGE 650
I + H ++ D++ + GE
Sbjct: 190 VIVVDHDLIVLDYLTDLIHIIYGE 213
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 6e-19
Identities = 38/246 (15%), Positives = 87/246 (35%), Gaps = 29/246 (11%)
Query: 413 IHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGS 472
I + R +++ + S + + +K G+ ++ +
Sbjct: 322 IPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSE 379
Query: 473 NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQ 532
L++ G NG+GK++L ++L G G S ++I + +
Sbjct: 380 ILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQL--FFKK 437
Query: 533 LIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARL 592
+ + Q +++K + ++ ++D+ LS GE QR+ +
Sbjct: 438 IRGQFLNPQFQT--------DVVKPLRIDDIIDQEV--------QHLSGGELQRVAIVLA 481
Query: 593 FYHKPKFAILDECTSAVTTDMEERF-CAKV-----RAMGTSCITISHRPALVAFH-DVVL 645
++DE ++ + D E+R C+KV + + H + + D V+
Sbjct: 482 LGIPADIYLIDEPSAYL--DSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVI 539
Query: 646 SLDGEG 651
+G
Sbjct: 540 VFEGIP 545
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 4e-15
Identities = 43/220 (19%), Positives = 72/220 (32%), Gaps = 37/220 (16%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV--------- 507
N + PG L + G NG GKS+ ++L G G P
Sbjct: 89 ANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFR 148
Query: 508 GSDL-NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV------------EL 554
GS+L N + + I P V+ G ++
Sbjct: 149 GSELQNYFTKMLEDDIKAIIKPQYVDNI-PRAIKGPVQ--KVGELLKLRMEKSPEDVKRY 205
Query: 555 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--VTTD 612
+K + LE +L R ++LS GE QR + + + DE +S V
Sbjct: 206 IKILQLENVLKRDI--------EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQR 257
Query: 613 ME-ERFCAKVRAMGTSCITISHRPALVAFH-DVVLSLDGE 650
+ + + A I + H +++ + D V + G
Sbjct: 258 LNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGV 297
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 2e-18
Identities = 48/200 (24%), Positives = 76/200 (38%), Gaps = 29/200 (14%)
Query: 445 IEFSGVKVV---TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
I+ V + +EN+ L+V G ++I GPNGSGK++L R + GL P SG+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP-YSGN 59
Query: 502 IAKPGVG-SDLNKEIFYVPQRP--YTAVGTLRDQLIYPL----TSDQEVEPLTHGGMVEL 554
I G+ + I Y P Y T+ D + E+
Sbjct: 60 IFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFL--------EM 111
Query: 555 LKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
LK + L E +L R +LS G+ + + +P+ LDE V
Sbjct: 112 LKALKLGEEILRRKL--------YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 614 EERFCAKVRAMGTSCITISH 633
++ G I ++H
Sbjct: 164 RHVISRYIKEYGKEGILVTH 183
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 7e-18
Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 31/228 (13%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA- 503
I+ + + G +++ ++ ++ G ++ G NG+GK++L +L P SG +
Sbjct: 22 IQLDQIGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80
Query: 504 ---KPGVGS----DLNKEIFYVPQR---PYTAVGTLRD----QLIYPLTSDQEVEPLTHG 549
PG + + I +V + + D + Q+++
Sbjct: 81 FGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRN 140
Query: 550 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
+LLK V + +Y LS GE+QR+ +AR +P+ ILDE + +
Sbjct: 141 EAHQLLKLVGMSAKAQQYIG--------YLSTGEKQRVMIARALMGQPQVLILDEPAAGL 192
Query: 610 TTDMEERFCAKVRAM-----GTSCITISHRP--ALVAFHDVVLSLDGE 650
E + + ++ + I ++H F ++L DG+
Sbjct: 193 DFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQ 240
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 8e-18
Identities = 47/240 (19%), Positives = 91/240 (37%), Gaps = 31/240 (12%)
Query: 420 SRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGP 479
+ + + + ++V G+ +E +++ G + I GP
Sbjct: 261 DENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGP 320
Query: 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQL-IYPLT 538
NG GK++ ++L G+ G I + + + Y PQ + +Y L
Sbjct: 321 NGIGKTTFVKMLAGVEEPTEGKI-------EWDLTVAYKPQY-----IKADYEGTVYELL 368
Query: 539 SDQEVEPLTHGGMV-ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKP 597
S + L ELLK + + L DR +ELS GE QR+ +A
Sbjct: 369 SKIDASKLNSNFYKTELLKPLGIIDLYDREV--------NELSGGELQRVAIAATLLRDA 420
Query: 598 KFAILDECTSAVTTDMEERF-CAKV-----RAMGTSCITISHRPALV-AFHDVVLSLDGE 650
+LDE ++ + D+E+R ++ + + + H ++ D ++ +GE
Sbjct: 421 DIYLLDEPSAYL--DVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGE 478
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 2e-15
Identities = 54/217 (24%), Positives = 88/217 (40%), Gaps = 38/217 (17%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP--LVSGHIAKPGV-----GSD 510
N V V+ G + I GPNG+GKS+ ++L G L + + GV G++
Sbjct: 34 NAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNE 93
Query: 511 L--------NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTH----GGMVELLKNV 558
L N EI V + Y LI + +E L G + E++K +
Sbjct: 94 LQNYFEKLKNGEIRPVVKPQYVD-------LIPKAVKGKVIELLKKADETGKLEEVVKAL 146
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--VTTDME-E 615
+LE +L+R LS GE QR+ +A F DE +S + +
Sbjct: 147 ELENVLEREI--------QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAA 198
Query: 616 RFCAKVRAMGTSCITISHRPALVA-FHDVVLSLDGEG 651
R ++ G S + + H A++ D++ + GE
Sbjct: 199 RAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEP 235
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 1e-17
Identities = 44/206 (21%), Positives = 83/206 (40%), Gaps = 37/206 (17%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G+ +E ++ G + I GPNG GK++ ++L G+ G + + + +
Sbjct: 368 GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-------EWDLTVA 420
Query: 517 YVPQR----PYTAVGTLRDQLIYP-LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEK 571
Y PQ V L ++ L S+ ELLK + + L DR
Sbjct: 421 YKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKT--------ELLKPLGIIDLYDRNV--- 469
Query: 572 EINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF-CAKV-----RAMG 625
++LS GE QR+ +A +LDE ++ + D+E+R ++
Sbjct: 470 -----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYL--DVEQRLAVSRAIRHLMEKNE 522
Query: 626 TSCITISHRPALV-AFHDVVLSLDGE 650
+ + + H ++ D ++ +GE
Sbjct: 523 KTALVVEHDVLMIDYVSDRLIVFEGE 548
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 7e-16
Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 37/205 (18%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL-------WPLVSGHIAKPGVGSD 510
N V V+ G + I GPNG+GK++ ++L G ++ + G++
Sbjct: 104 NAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE 163
Query: 511 L--------NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTH----GGMVELLKNV 558
L N EI V + Y L+ + E L G E++K +
Sbjct: 164 LQNYFERLKNGEIRPVVKPQYVD-------LLPKAVKGKVRELLKKVDEVGKFEEVVKEL 216
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA--VTTDME-E 615
+LE +LDR +LS GE QR+ +A K F DE +S + ++
Sbjct: 217 ELENVLDREL--------HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVA 268
Query: 616 RFCAKVRAMGTSCITISHRPALVAF 640
R ++ G + + + H A++ +
Sbjct: 269 RVIRRLANEGKAVLVVEHDLAVLDY 293
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 51/228 (22%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+ + N L + L + G L + G NG GKS+L +L G+ + G I
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-- 62
Query: 505 PGVGSDLNKEIFYVPQR-----PYTA-----------VGTLRDQLIYPLTSDQEVEPLTH 548
++ + I +VPQ Y+ + T P + D +V
Sbjct: 63 -----EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK----PKSHDYQV----- 108
Query: 549 GGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
++ L ++L +L R LS G++Q + +AR + K +LDE TSA
Sbjct: 109 --AMQALDYLNLTHLAKREF--------TSLSGGQRQLILIARAIASECKLILLDEPTSA 158
Query: 609 VTTDM--EERFCAKV----RAMGTSCITISHRPALVA-FHDVVLSLDG 649
+ D+ ++ + + ++ + + +H+P V + L L+
Sbjct: 159 L--DLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNK 204
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 5e-15
Identities = 33/162 (20%), Positives = 72/162 (44%), Gaps = 27/162 (16%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV-GSDLNKEI 515
++E +T+ +E G+ + GPNG GK++L + + + G I GV + + +I
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI 80
Query: 516 FYVPQRP--YTAVGTLRDQL-----IYPLTSDQE-VEPLTHGGMVELLKNVDLEYLLDRY 567
F++P+ + ++ D L +Y + ++ + + L++V++ L +
Sbjct: 81 FFLPEEIIVPRKI-SVEDYLKAVASLYGVKVNKNEIM--------DALESVEVLDLKKKL 131
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
ELS G +R+ +A + +LD+ A+
Sbjct: 132 ---------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAI 164
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 7e-15
Identities = 122/672 (18%), Positives = 248/672 (36%), Gaps = 96/672 (14%)
Query: 386 IISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYI 445
++ S+G S + G A + + +I + SI+ S +G + + N +
Sbjct: 334 VLIGAFSVGQASPNIEAFANARGAAYEVFK--IIDNKPSIDSFSK--SGHKPDNIQGN-L 388
Query: 446 EFSGVKVVTPT-GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
EF + P+ V + + L LKV+ G + + G +G GKS+ +++ L+ + G ++
Sbjct: 389 EFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448
Query: 504 KPGVG-SDLN-----KEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELL 555
G +N + I V Q P T+ + + Y + E+E + +
Sbjct: 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIE--------KAV 500
Query: 556 KNVDLEYLLDRYPP-------EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
K + + + P E+ G +LS G++QR+ +AR PK +LDE TSA
Sbjct: 501 KEANAYDFIMKLPHQFDTLVGER----GAQLSGGQKQRIAIARALVRNPKILLLDEATSA 556
Query: 609 VTTDMEER-FCAKVRAM-GTSCITISHRPALVAFHDVVLSLDGEGEWRV-----HD---K 658
+ T+ E A +A G + I I+HR + V DV+ D G + HD +
Sbjct: 557 LDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFD-GG--VIVEQGNHDELMR 613
Query: 659 RDG--SSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAAS 716
G +V + ++ +++K + + + S
Sbjct: 614 EKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHD 673
Query: 717 PIADHNVPLPVFPQLKSAP--RILPLRVADMFKVLVPTVFDK-QGAQLLAVAFLVVSRTW 773
+ + + A RIL L + +V G A + +
Sbjct: 674 QDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVI------ 727
Query: 774 ISDRIASLNGTTVKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRH-LTARLALGWRIR 832
S + Q+ ++ L+ + + SFI ++ + R
Sbjct: 728 FSKVVGVFTNGGPPETQRQN-SNLFSLLFLIL---GIISFITFFLQGFTFGKAGEILTKR 783
Query: 833 MTQHLLKSYLRKN-SFYKVFNMSSKSIDADQRITHDLEKL-----------TTDLSGLVT 880
+ + KS LR++ S++ ++ ++ R+ +D ++ +++ L T
Sbjct: 784 LRYMVFKSMLRQDVSWFDDPKNTTGALTT--RLANDAAQVKGATGSRLAVIFQNIANLGT 841
Query: 881 GMVKPSVDI-LWFTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGT 939
G++ I L + W++ L + + ++ G + G +++LEG+
Sbjct: 842 GII-----ISLIYGWQL-TL-----LLLAIVPIIAIAGVVEMKM-LSGQALKDKKELEGS 889
Query: 940 FRFMHERLRAHAESVAFFGGGAREKAMIESRFRELLEHSLLLLKKKWLFGILDDFVTKQL 999
+ E + +V RE+ + L +KK +FGI F Q
Sbjct: 890 GKIATEAIENF-RTVVSLT---REQKFETMYAQSLQIPYRNAMKKAHVFGIT--FSFTQA 943
Query: 1000 PHNVTWGLSLLY 1011
++ + +
Sbjct: 944 MMYFSYAAAFRF 955
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 4e-13
Identities = 105/537 (19%), Positives = 197/537 (36%), Gaps = 120/537 (22%)
Query: 151 ILLCFLLSTMHSTSKYITGTLSLQFRKIVTKLIHTRYFENMAYYKISHVD------GRIT 204
I+ T L+ + R F++M +S D G +T
Sbjct: 760 IISFITFFLQGFTFGKAGEILTKRLRY--------MVFKSMLRQDVSWFDDPKNTTGALT 811
Query: 205 HPEQRLASDVPRFCSELSELVQDDL-----------TAVTDGLLYTWRL---CSYASPKY 250
RLA+D +++ L T + L+Y W+L P
Sbjct: 812 ---TRLAND----AAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVP-- 862
Query: 251 VFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFYGGENKEE 310
+A V+ M+ + K + ++ E RT + E K
Sbjct: 863 -IIAIAGVVEM-KMLSGQALKDKKELEGSGKIATEAI---ENFRT----VVSLTREQK-- 911
Query: 311 SHIQQKF-KALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTST 369
+ + ++L R + FG+ F + + A F G
Sbjct: 912 --FETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAA-----FRFG-------- 956
Query: 370 LGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHE--------LMVISR 421
A +++ ++ + + + ++S +A + + +I +
Sbjct: 957 ---AYLVTQQLMTFE---NVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEK 1010
Query: 422 ELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT-GNVLV-ENLTLKVEPGSNLLITGP 479
I+ S G + E N ++FSGV PT ++ V + L+L+V+ G L + G
Sbjct: 1011 TPEIDSYST--QGLKPNMLEGN-VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGS 1067
Query: 480 NGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLN-----KEIFYVPQRPYTAVGTLRDQL 533
+G GKS++ ++L + ++G + G LN ++ V Q P ++ + +
Sbjct: 1068 SGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENI 1127
Query: 534 IY----PLTSDQEVEPLTHGGMVELLKNVDL----EYLLDRYPPEKEI-NWGDELSLGEQ 584
Y + S +E+ K ++ + L D+Y + + G +LS G++
Sbjct: 1128 AYGDNSRVVSYEEIV--------RAAKEANIHQFIDSLPDKY--NTRVGDKGTQLSGGQK 1177
Query: 585 QRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV------RAM-GTSCITISHR 634
QR+ +AR +P +LDE TSA+ T+ E KV +A G +CI I+HR
Sbjct: 1178 QRIAIARALVRQPHILLLDEATSALDTESE-----KVVQEALDKAREGRTCIVIAHR 1229
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.4 bits (192), Expect = 9e-15
Identities = 110/730 (15%), Positives = 218/730 (29%), Gaps = 224/730 (30%)
Query: 309 EESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNLKPDTS 368
E Q ++K + D++ +QD L +I+ +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK------DAVSG 63
Query: 369 TLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGY---ADRIHELMVISRELSI 425
TL ++ L ++ F R+N Y I
Sbjct: 64 TL---RLFWTLLSKQEEMVQKFVE------EVLRIN----YKFLMSPIKT---------- 100
Query: 426 EDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNV----LVENLT---LKVEPGSNLLITG 478
E + P +R Y + + + ++ +V NV L L++ P N+LI G
Sbjct: 101 EQRQPSMM-TRMYIEQRDRL-YNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 479 PNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT 538
GSGK+ + V ++ +IF++ + +
Sbjct: 158 VLGSGKTW----------VALDVCLSYKVQCKMDFKIFWL------NLKNCN-------S 194
Query: 539 SDQEVEPLTHGGMVELLKNVDLEY--LLDR-YPPEKEINWGDELSLGEQQRLGMARLFYH 595
+ +E L +LL +D + D + I+ Q L RL
Sbjct: 195 PETVLEMLQ-----KLLYQIDPNWTSRSDHSSNIKLRIHS-------IQAEL--RRLLKS 240
Query: 596 KP-KFA--ILDE-CTSAVTTDMEERFCAKVRAMGTSC-ITISHRPALVAFHDVVLSLDGE 650
KP + +L + A SC I ++ R V D +
Sbjct: 241 KPYENCLLVLLNVQNAKA-----------WNAFNLSCKILLTTRFKQVT--DFL------ 281
Query: 651 GEWRVHDKRDGSSVVTKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVS 710
++ T ++ + T + ++ K + + + Q
Sbjct: 282 ----------SAATTTHISLDHHSMTLTPDEVKSL-----L--LK----YLDCRPQD--- 317
Query: 711 EVIAASPIADHNVPLPVFPQLKSAPRILPLRVADMFKVLVPTVFDKQGAQLLAVAFLVVS 770
LP + P R++ + +
Sbjct: 318 --------------LP-----REVLTTNPRRLS-II-----------AESI--------- 337
Query: 771 R----TWI------SDRIASLNGTTVKYVLEQD--KASFVRLIGVSVLQSAASSFIAPSI 818
R TW D++ ++ +++ VLE + F RL SV S+ I P
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLN-VLEPAEYRKMFDRL---SVFPP--SAHI-P-- 388
Query: 819 RHLTARLALGWR-------IRMTQHLLKSYL----RKNSFYKVFN--MSSKSIDADQRIT 865
T L+L W + + L K L K S + + + K ++
Sbjct: 389 ---TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 866 HD--LEKLTTDLSGLVTGMVKPSVDILWFT---WRMKALTGQRGVAILYAYMLLGLGFLR 920
H ++ + ++ P +D +++ +K + L+ + L FL
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI-EHPERMTLFRMVFLDFRFLE 504
Query: 921 -------SVTPEFGDLTSREQQLEGTFRFM---HERLRAHAESVAFFGGGAREKAMIESR 970
+ G + + QQL+ ++ + ++ F E +I S+
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN-LICSK 563
Query: 971 FRELLEHSLL 980
+ +LL +L+
Sbjct: 564 YTDLLRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 1e-09
Identities = 89/606 (14%), Positives = 189/606 (31%), Gaps = 142/606 (23%)
Query: 512 NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQE--VEPLTHGGMVELLKNVDLEYLLDRYPP 569
+EI ++ GTLR L + L S QE V+ VE + ++ ++L+
Sbjct: 48 KEEIDHIIMSKDAVSGTLR--LFWTLLSKQEEMVQKF-----VEEVLRINYKFLMSPIKT 100
Query: 570 EKEINWGDELSLGEQQ-RL-GMARLF--YHKPKFAILDECTSAVTTDMEERFCAKVRAM- 624
E+ EQ+ RL ++F Y+ + + A+ + + +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL-IDGVL 159
Query: 625 --GTSCITISHRPALVAFHDVVLSLDGEGEWRVHDKRDGSSVVTKSGINMIKSSETDRQS 682
G + + + + + V +D + W + +
Sbjct: 160 GSGKTWVALD----VCLSYKVQCKMDFKIFW-------------------LNLKNCNSPE 196
Query: 683 DAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVFPQLKSAPRILPLRV 742
+ + Q + + D +++ S N+ L +++ R L L+
Sbjct: 197 TVLEMLQKLLY-QIDPNWTSRSDHSS-------------NIKLR-IHSIQAELRRL-LKS 240
Query: 743 ADMFKVLVPTVFDK-QGAQLLAVAFLVVSRTWISDR----IASLNGTTVKYV-------- 789
L+ V Q A+ AF + + ++ R L+ T ++
Sbjct: 241 KPYENCLL--VLLNVQNAKAWN-AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 790 LEQDKAS--FVRLIGVSV--LQSAAS-------SFIAPSIRHLTARLALGWRIRMTQHLL 838
L D+ ++ + L S IA SIR A W
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT----W--------- 344
Query: 839 KSYLRKNSFYKVFNMSSKSIDADQRITHDLEKLTTDLSGLVTGMVKPSVDI-------LW 891
+ + K+ + S++ + + K+ LS + PS I +W
Sbjct: 345 -DNWKHVNCDKLTTIIESSLNVLE--PAEYRKMFDRLS-----VFPPSAHIPTILLSLIW 396
Query: 892 FTWRMKALTGQRGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHA 951
+ + V L+ Y L+ S T + + +H + H
Sbjct: 397 --FDVIKSDVMVVVNKLHKYSLVEKQPKES-TISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 952 ESVAFFGGGAREKAMIESRFRELLEHSLL---LLKKKWLFGI--LD-DFVTKQLPHNVT- 1004
F ++ F + H L ++ LF + LD F+ +++ H+ T
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 1005 WG-----LSLL--------YAMEHKGDRALVSTQGEIRMIMNLIHCLDSHLSSITHAHCI 1051
W L+ L Y ++ R++ ++ L ++ +
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYE--------RLVNAILDFLPKIEENLICSKYT 565
Query: 1052 AIFQVS 1057
+ +++
Sbjct: 566 DLLRIA 571
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 1e-05
Identities = 63/404 (15%), Positives = 118/404 (29%), Gaps = 132/404 (32%)
Query: 677 ETDRQ----SDAMAV-EQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPLPVFPQL 731
ET D ++V E AFV + F Q +++ I DH +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFV---DN--FDCKDVQDMPKSILSKEEI-DHIIMSK----- 58
Query: 732 KSAPRILPLRVADMFKVLVPTVFDKQ--GAQLLAVAFLVVSRTWISDRIASLN----GTT 785
+ L T+ KQ Q L ++ ++ I + T
Sbjct: 59 ---DAVSGTLR------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 786 VKYVLEQDKASFVRLIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLKSYLRKN 845
Y+ ++D+ L + F +++ RL ++R Q LL+ LR
Sbjct: 110 RMYIEQRDR-----------LYNDNQVFAK---YNVS-RLQPYLKLR--QALLE--LRPA 150
Query: 846 SFYKVFNM--SSKSIDADQRI-THDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQ 902
+ + S K+ A ++ ++ K I W
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQC-------------KMDFKIFWLN------LKN 191
Query: 903 RGVAILYAYMLLGLGFLRSVTPEFGDLTSREQQLEGTFRFMHERLRAHAESVAFFGGGAR 962
ML L L + P + + + +LR H+
Sbjct: 192 CNSPETVLEMLQKL--LYQIDPNWTSRSDHSSNI---------KLRIHS----------- 229
Query: 963 EKAMIESRFRELL-----EHSLLLLKKKWLFGILDDFVTKQLPHNVTWGLSLLYAMEHKG 1017
I++ R LL E+ LL +L + V A
Sbjct: 230 ----IQAELRRLLKSKPYENCLL---------VLLN-V---------QNAKAWNAFNL-S 265
Query: 1018 DRALVSTQGEIRMIMNLIH-------CLDSHLSSITHAHCIAIF 1054
+ L++T+ + + + + LD H ++T ++
Sbjct: 266 CKILLTTRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 4e-05
Identities = 71/503 (14%), Positives = 139/503 (27%), Gaps = 144/503 (28%)
Query: 39 YLKSRFS--SKKP----DAFGHY-NGL-GDSERKPDKAVANRSNIKKANQKKGGLKSLQV 90
+L S ++P + + L D++ V +R ++ + + L L+
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SR--LQPYLKLRQALLELRP 149
Query: 91 LAAILLSEMGKMGARDLLALV------------GIVVLRTALSNR----LAKVQGFLF-- 132
+L+ + G + V I L N L +Q L+
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 133 ------RAAFLRRVPLFFQLISENILLCFLLSTMHSTS---------KYITGTLSLQFRK 177
R+ + L I L L S + +L +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAE-LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 178 IVTKLIHTRY--------FENMAYYKISHVDGRITHPE-------------QRLASDV-- 214
++T TR+ + + H +T E Q L +V
Sbjct: 269 LLT----TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 215 --PRFCSELSELVQDDLTAVTDGLLY--TWRL-----CSYA--SPK-----Y----VF-- 252
PR S ++E ++D L A D + +L S P + VF
Sbjct: 325 TNPRRLSIIAESIRDGL-ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 253 --WILAYVLG----------AGTMMRNFSPAFGKLMSKEQQLEGEYR------------- 287
I +L ++ + ++Q E
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKL---HKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 288 ---QLHSRLRTHAESIAFYGGENKEESHIQQ-KFKALTRHMRVVLHDHWWFGMIQDFL-L 342
LH + H + ++ ++ Q + + H++ + H FL
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 343 KYLGATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRR 402
++L I A N L L+++ I R
Sbjct: 501 RFLEQK-----IRHDSTAWNASGSILNT-----LQQLKFYKPYICD------NDPKYERL 544
Query: 403 LNRLSGYADRIHELMVISRELSI 425
+N + + +I E ++ S+ +
Sbjct: 545 VNAILDFLPKIEENLICSKYTDL 567
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 1e-14
Identities = 66/305 (21%), Positives = 108/305 (35%), Gaps = 36/305 (11%)
Query: 445 IEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
+ + G + EN++ + PG + + G GSGKS+L L G I
Sbjct: 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQ 78
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLT--SDQEV-EPLTHGGMVEL 554
GV K +PQ+ + GT R L P SDQE+ + G+ +
Sbjct: 79 IDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQEIWKVADEVGLRSV 137
Query: 555 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV--TTD 612
++ LD + G LS G +Q + +AR K K +LDE ++ + T
Sbjct: 138 IEQ--FPGKLDFVLVDG----GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY 191
Query: 613 MEERFCAKVRAMGTSC--ITISHRPALVAFHDVVLSLDGEGEWRVHDK-----RDGSSVV 665
R ++ C I R + D L ++ E + R +D +
Sbjct: 192 QIIR--RTLKQAFADCTVILCEARIEAMLECDQFLVIE-ENKVRQYDSILELYHYPADRF 248
Query: 666 TKSGINMIKSSETDRQSDAMAVEQAFVTAKKDSAFSNPKAQSYVSEVIAASPIADHNVPL 725
I K + + A A++Q V P Q V + N+ L
Sbjct: 249 VAGFIGSPKMNFLPVKVTATAIDQVQVEL------PMPNRQQVWLPVESRDVQVGANMSL 302
Query: 726 PVFPQ 730
+ P+
Sbjct: 303 GIRPE 307
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 2e-14
Identities = 62/262 (23%), Positives = 106/262 (40%), Gaps = 27/262 (10%)
Query: 386 IISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYI 445
+ S S R + + + + +L+ E ++D G+ + I
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMFIDMENMFDLL--KEETEVKDLP----GAGPLRFQKGRI 54
Query: 446 EFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKP 505
EF V G +++++ V PG L + GP+G+GKS++ R+L + + SG I
Sbjct: 55 EFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRID 114
Query: 506 GVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKN 557
G + L I VPQ T+ D + Y + EVE +
Sbjct: 115 GQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVE--------AAAQA 166
Query: 558 VDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
+ + +P G+ +LS GE+QR+ +AR P +LDE TSA+ T E
Sbjct: 167 AGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNE 226
Query: 615 ERFCAKVRAM--GTSCITISHR 634
A + + + I ++HR
Sbjct: 227 RAIQASLAKVCANRTTIVVAHR 248
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 3e-14
Identities = 41/217 (18%), Positives = 74/217 (34%), Gaps = 44/217 (20%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSD 510
+ + L+ +V G L + GPNG+GKS+L + G+ G I G +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATK 70
Query: 511 LNKEIFYVPQRPYTAVGTLRDQLI----YPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
L Y+ Q+ T + + T + + ++ + L+ L R
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN--------DVAGALALDDKLGR 122
Query: 567 YPPEKEINWGDELSLGEQQRLGMAR-------LFYHKPKFAILDECTSA------VTTDM 613
++LS GE QR+ +A + +LDE ++ D
Sbjct: 123 ST--------NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD- 173
Query: 614 EERFCAKVRAMGTSCITISHRPALVAFH-DVVLSLDG 649
+ + + G + + SH H L G
Sbjct: 174 --KILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKG 208
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 69.4 bits (171), Expect = 4e-13
Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 34/210 (16%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+ V ++ +++ + +P S + GP+G GKS++F +L + +G I
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 505 PGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY---PLTSDQEVEPLTHGGMVELL 555
G + +I +V Q GT+R+ L Y +D+++ ++L
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLW--------QVL 113
Query: 556 KNVDLEYLLDRYPP-------EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
++ P E+ G ++S G++QRL +AR F PK +LDE T++
Sbjct: 114 DLAFARSFVENMPDQLNTEVGER----GVKISGGQRQRLAIARAFLRNPKILMLDEATAS 169
Query: 609 VTTDME-ERFC--AKVRAM-GTSCITISHR 634
+ D E E A M G + + I+HR
Sbjct: 170 L--DSESESMVQKALDSLMKGRTTLVIAHR 197
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 4e-13
Identities = 88/538 (16%), Positives = 186/538 (34%), Gaps = 79/538 (14%)
Query: 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHS-TSK 165
+++ + +V+ A + + L F F +++ IL + + S
Sbjct: 28 VVSTIALVIN-AAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASS 86
Query: 166 YITGTLSLQF-----RKIVTKLIH--TRYFENMAYYKISHVDGRITHPEQRLASDVPRFC 218
Y +S R++ +H R+F+ + RIT+ +++A
Sbjct: 87 YCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ---ESTGGLLSRITYDSEQVAGATS--- 140
Query: 219 SELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSK 278
L +V++ + + GLL L + S + ++ + S F K+
Sbjct: 141 RALVSIVREGASII--GLLT---LMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRN 195
Query: 279 EQQLEGEY-RQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMI 337
Q G L+ H + YGG+ E +++F ++ MR I
Sbjct: 196 MQTAMGHVTSSAEQMLKGHKV-VLSYGGQEVE----RKRFDKVSNSMRQQTMKLVSAQSI 250
Query: 338 QDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTL 396
D +++ + + ++ F A T G +F ++ L
Sbjct: 251 ADPVIQMIASLALFAVL---FLASVDSIRAELTPG-------------TFTVVFSAMFGL 294
Query: 397 SISSRRLNRLSGY-------ADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSG 449
+ L ++ + LM + ++ + NG ++
Sbjct: 295 MRPLKALTSVTSEFQRGMAACQTLFGLM--------DLETERDNGKYEAERVNGEVDVKD 346
Query: 450 VKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG 508
V +++ + G + + G +GSGKS++ + + + SG I G
Sbjct: 347 VTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD 406
Query: 509 ------SDLNKEIFYVPQRPYTAVGTLRDQLIY---PLTSDQEVEPLTHGGMVELLKNVD 559
++L + V Q + T+ + + Y + +++E + +
Sbjct: 407 VRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIE--------QAARQAH 458
Query: 560 LEYLLDRYPPEKEINWGDE---LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
++ P + G+ LS G++QR+ +AR ILDE TSA+ T+ E
Sbjct: 459 AMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESE 516
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 5e-13
Identities = 96/538 (17%), Positives = 200/538 (37%), Gaps = 79/538 (14%)
Query: 107 LLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHS-TSK 165
++A + +++ A + + L F + + ++ +L + S S
Sbjct: 28 IVAGIALILN-AASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISS 86
Query: 166 YITGTLSLQ---------FRKIVTKLIHTRYFENMAYYKISHVDGRITHPEQRLASDVPR 216
Y +S + F ++ + +F+ + RIT+ +++AS
Sbjct: 87 YCISWVSGKVVMTMRRRLFGHMMG--MPVAFFDK---QSTGTLLSRITYDSEQVASSSS- 140
Query: 217 FCSELSELVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLM 276
L +V++ + + GL + Y S + ++ +R S F +
Sbjct: 141 --GALITVVREGASII--GLFI---MMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSIS 193
Query: 277 SKEQQLEGEY-RQLHSRLRTHAESIAFYGGENKEESHIQQKFKALTRH-----MRVVLHD 330
Q G+ L+ H E + F GG+ E ++F ++ M++V
Sbjct: 194 KNMQNTMGQVTTSAEQMLKGHKEVLIF-GGQEVE----TKRFDKVSNKMRLQGMKMVSAS 248
Query: 331 HWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDTSTLGRAKMLSNLRYHTSVIISL 389
+IQ + A++A+ ++ + A D+ T G + +I+L
Sbjct: 249 SISDPIIQ-LI-----ASLALAFVL--YAASFPSVMDSLTAG--TITVVFSS----MIAL 294
Query: 390 FQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSG 449
+ L +L+ + + R + ++ + + + G R +EF
Sbjct: 295 MRPLKSLTNVNAQFQRGMAACQTLFAIL--------DSEQEKDEGKRVIDRATGDLEFRN 346
Query: 450 VKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG 508
V P V N+ LK+ G + + G +GSGKS++ ++ + + GHI G
Sbjct: 347 VTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD 406
Query: 509 ------SDLNKEIFYVPQRPYTAVGTLRDQLIY---PLTSDQEVEPLTHGGMVELLKNVD 559
+ L ++ V Q + T+ + + Y S +++E E +
Sbjct: 407 LREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIE--------EAARMAY 458
Query: 560 LEYLLDRYPPEKEINWGDE---LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
+++ + G+ LS G++QR+ +AR ILDE TSA+ T+ E
Sbjct: 459 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 1e-12
Identities = 73/331 (22%), Positives = 125/331 (37%), Gaps = 59/331 (17%)
Query: 346 GATVAVILIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNR 405
+AV+ G + + + +++ Y ++ SL +G + + R
Sbjct: 259 MGMIAVLWF------GGVLVRNNQMEIGSIMAYTNYLMQIMFSLMM-IGNILNF---IVR 308
Query: 406 LSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLV-ENL 464
S A R+ E V++ + +IE+ + + + F V+ V +
Sbjct: 309 ASASAKRVLE--VLNEKPAIEEAD----NALALPNVEGSVSFENVEFRYFENTDPVLSGV 362
Query: 465 TLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV------GSDLNKEIFYV 518
V+PGS + + G GSGKS+L ++ L G + + DL I V
Sbjct: 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAV 422
Query: 519 PQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKN-------VDLEYLLDRYPP 569
PQ GT+++ L + +D E +VE K + L D
Sbjct: 423 PQETVLFSGTIKENLKWGREDATDDE--------IVEAAKIAQIHDFIISLPEGYDSRVE 474
Query: 570 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV--TTDMEERFCAKVRAM--- 624
N S G++QRL +AR KPK ILD+CTS+V T+ ++
Sbjct: 475 RGGRN----FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITE------KRILDGLKR 524
Query: 625 ---GTSCITISHRPALVAFHDVVLSLDGEGE 652
G + I+ + D +L L EG+
Sbjct: 525 YTKGCTTFIITQKIPTALLADKILVLH-EGK 554
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 26/206 (12%)
Query: 445 IEFSGVK---VVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
IEFS V L +++ + G+ + G GSGKS++ ++L + G
Sbjct: 18 IEFSDVNFSYPKQTNHRTL-KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGD 75
Query: 502 IAKPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVE 553
I G + + I VPQ T++ ++Y +D+EV +
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVI--------K 127
Query: 554 LLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
K+ L ++ P + + G+ +LS GE+QR+ +AR PK I DE TS++
Sbjct: 128 ATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLD 187
Query: 611 TDMEERFCAKVRAM--GTSCITISHR 634
+ E F V + + I I+HR
Sbjct: 188 SKTEYLFQKAVEDLRKNRTLIIIAHR 213
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 45/203 (22%)
Query: 422 ELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNG 481
+ +K+ Q N +R + + + FS + G +++++ K+E G L + G G
Sbjct: 18 FGELFEKAKQNNNNRKTSNGDDSLSFSNF---SLLGTPVLKDINFKIERGQLLAVAGSTG 74
Query: 482 SGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLI------- 534
+GK+SL ++ G G I G I + Q + GT+++ +I
Sbjct: 75 AGKTSLLMMIMGELEPSEGKIKHSG-------RISFCSQNSWIMPGTIKENIIGVSYDEY 127
Query: 535 -YP-------LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQR 586
Y L D + L E I LS G++ R
Sbjct: 128 RYRSVIKACQLEEDISK--FAEKDNIVL--------------GEGGIT----LSGGQRAR 167
Query: 587 LGMARLFYHKPKFAILDECTSAV 609
+ +AR Y +LD +
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYL 190
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 30/161 (18%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKE------ 514
++ ++ ++E G + GPNG+GK++ R++ L SG + G ++ +E
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGK--NVVEEPHEVRK 88
Query: 515 -IFYVPQRP--YTAVGTLRDQL-----IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
I Y+P+ Y + + L Y S E+E + + L +
Sbjct: 89 LISYLPEEAGAYRNM-QGIEYLRFVAGFYAS-SSSEIEEMVE----RATEIAGLGEKIKD 142
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
S G ++L +AR P+ AILDE TS
Sbjct: 143 RV--------STYSKGMVRKLLIARALMVNPRLAILDEPTS 175
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 5e-11
Identities = 44/218 (20%), Positives = 79/218 (36%), Gaps = 44/218 (20%)
Query: 441 EANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500
E ++ + G ++ + + ++ G I G NG GKS+LF+ G+ SG
Sbjct: 4 EDYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG 63
Query: 501 HIAKPGVG--------SDLNKEIFYVPQRPYTAVGTLRDQLIYPL-------------TS 539
I L + I V Q P +QL
Sbjct: 64 RILFDNKPIDYSRKGIMKLRESIGIVFQDP-------DNQLFSASVYQDVSFGAVNMKLP 116
Query: 540 DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKF 599
+ E+ LK +E+L D+ LS G+++R+ +A + +PK
Sbjct: 117 EDEIRKRVD----NALKRTGIEHLKDKPT--------HCLSFGQKKRVAIAGVLVMEPKV 164
Query: 600 AILDECTS----AVTTDMEERFCAKVRAMGTSCITISH 633
ILDE T+ +++ + + +G + I +H
Sbjct: 165 LILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATH 202
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 9e-11
Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 39/162 (24%)
Query: 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521
+++ K+E G L + G G+GK+SL ++ G G I G I + Q
Sbjct: 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------RISFCSQF 77
Query: 522 PYTAVGTLRDQLIYPLTSDQE--------------VEPLTHGGMVELLKNVDLEYLLDRY 567
+ GT+++ +I+ ++ D+ + + L
Sbjct: 78 SWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVL------------- 124
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
E I LS G++ R+ +AR Y +LD +
Sbjct: 125 -GEGGIT----LSGGQRARISLARAVYKDADLYLLDSPFGYL 161
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 9e-11
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 38/212 (17%)
Query: 445 IEFSGVKVV-TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
I F ++ P V+++N+ L ++ G + I G +GSGKS+L +++ + +G +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 504 KPGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLT-----HGG 550
G + L +++ V Q ++ D + P S ++V H
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 551 MVELLKNVDLEYLLDRYPPEK------EINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+ EL E E G LS G++QR+ +AR + PK I DE
Sbjct: 128 ISEL--------------REGYNTIVGE--QGAGLSGGQRQRIAIARALVNNPKILIFDE 171
Query: 605 CTSAVTTDMEERFC-AKVRAM-GTSCITISHR 634
TSA+ + E + G + I I+HR
Sbjct: 172 ATSALDYESEHVIMRNMHKICKGRTVIIIAHR 203
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 3e-10
Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 39/162 (24%)
Query: 462 ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQR 521
+T + G+ + + G G GKSSL L V GH+A G + YVPQ+
Sbjct: 22 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------SVAYVPQQ 74
Query: 522 PYTAVGTLRDQLIYPLTSDQE--------------VEPLTHGGMVELLKNVDLEYLLDRY 567
+ +LR+ +++ ++ +E L G E+
Sbjct: 75 AWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEI------------- 121
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
EK +N LS G++QR+ +AR Y + D+ SAV
Sbjct: 122 -GEKGVN----LSGGQKQRVSLARAVYSNADIYLFDDPLSAV 158
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 53/208 (25%), Positives = 80/208 (38%), Gaps = 44/208 (21%)
Query: 431 QRNGSRNYFSEANYIEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSL 487
+ + + I+ S + V G ++ N++L V G + G +G+GKS+L
Sbjct: 11 HHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTL 70
Query: 488 FRVLGGLWPLVSGHIAKPGV------GSDLNKE------IF----YVPQRPYTAVGTLRD 531
R + L G + G S+L K IF + R T+
Sbjct: 71 IRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR------TVFG 124
Query: 532 QLIYPL----TSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRL 587
+ PL T EV+ ELL V L D YP LS G++QR+
Sbjct: 125 NVALPLELDNTPKDEVKRRVT----ELLSLVGLGDKHDSYP--------SNLSGGQKQRV 172
Query: 588 GMARLFYHKPKFAILDECTSAV---TTD 612
+AR PK + D+ TSA+ TT
Sbjct: 173 AIARALASNPKVLLCDQATSALDPATTR 200
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 5e-10
Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 39/183 (21%)
Query: 444 YIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
IEF GV+ + P G V ++ ++ G + + GP+GSGK+++ R++ GL G +
Sbjct: 14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 504 KPGVGSDLNKEIFYVP--QRPYTAVG------------TLRDQLIYPL----TSDQEVEP 545
G K + +P +R VG T+ D + + L E++
Sbjct: 74 IGG------KRVTDLPPQKRN---VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDA 124
Query: 546 LTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDEC 605
ELL+ + LE +R+P ELS G+QQR+ +AR +P+ + DE
Sbjct: 125 RVR----ELLRFMRLESYANRFP--------HELSGGQQQRVALARALAPRPQVLLFDEP 172
Query: 606 TSA 608
+A
Sbjct: 173 FAA 175
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 7e-10
Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 44/167 (26%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
N ++NL+LKVE G +I GP G+GK+ ++ G SG I G K++
Sbjct: 12 KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDG------KDVT 65
Query: 517 YVP--QRPYTAVG------------TLRDQLIYPLT-----SDQEVEPLTHGGMVELLKN 557
+ + + ++ L + + + V + ++
Sbjct: 66 DLSPEKHD---IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVL--------DTARD 114
Query: 558 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+ +E+LLDR P LS GEQQR+ +AR PK +LDE
Sbjct: 115 LKIEHLLDRNP--------LTLSGGEQQRVALARALVTNPKILLLDE 153
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 2e-09
Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 35/170 (20%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
++ +++L ++PG L I G +G GK++L R L G SG I+ G + +
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGK--TIFSKNT 73
Query: 517 YVP--QRPYTAVG------------TLRDQLIYPL----TSDQEVEPLTHGGMVELLKNV 558
+P +R +G T+ + Y L + +L+
Sbjct: 74 NLPVRERR---LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE----AMLELT 126
Query: 559 DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
+ L RYP ELS G+QQR +AR P+ +LDE SA
Sbjct: 127 GISELAGRYP--------HELSGGQQQRAALARALAPDPELILLDEPFSA 168
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 55/212 (25%), Positives = 81/212 (38%), Gaps = 41/212 (19%)
Query: 445 IEFSGVKVV----TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSG 500
IE V + TP +EN++L + G LL+ G GSGKS+L +++ GL SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 501 HIAKPGVGSDLN---KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE--PLTHGGMVELL 555
+ G + I Q P DQ EV + +
Sbjct: 63 DVLYDGERKKGYEIRRNIGIAFQYP-------EDQFFAE-RVFDEVAFAVKNFYPDRDPV 114
Query: 556 KNV---------DLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECT 606
V D + DR P LS GE++R+ +A + H+P ILDE
Sbjct: 115 PLVKKAMEFVGLDFDSFKDRVP--------FFLSGGEKRRVAIASVIVHEPDILILDEPL 166
Query: 607 SAVTTDMEER-----FCAKVRAMGTSCITISH 633
+ D E + K + +G + I ISH
Sbjct: 167 VGL--DREGKTDLLRIVEKWKTLGKTVILISH 196
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 4e-09
Identities = 62/231 (26%), Positives = 95/231 (41%), Gaps = 44/231 (19%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+ +K V +L + ++L V+ G + I G +GSGKS+L +LG L G +
Sbjct: 5 LRAENIKKVIRGYEIL-KGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63
Query: 505 PGVG-SDL---------NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGM-- 551
G N+++ +V Q + LI LT+ + V P+ G
Sbjct: 64 EGKEVDYTNEKELSLLRNRKLGFVFQF-H--------YLIPELTALENVIVPMLKMGKPK 114
Query: 552 -------VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
LL + L L R P ELS GEQQR+ +AR ++P DE
Sbjct: 115 KEAKERGEYLLSELGLGDKLSRKP--------YELSGGEQQRVAIARALANEPILLFADE 166
Query: 605 CT----SAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSL-DGE 650
T SA T + + F K+ GTS + ++H L L + DG+
Sbjct: 167 PTGNLDSANTKRVMDIF-LKINEGGTSIVMVTHERELAELTHRTLEMKDGK 216
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 33/178 (18%)
Query: 445 IEFSGVKVVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
I V V G V+ ++N+ + +E G I GP+G+GK++ R++ GL +G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 504 KPGVGSDL--NKEIFYVP--QRPYTAV---------GTLRDQLIYPL----TSDQEVEPL 546
L + VP R V T + + +PL S +E+
Sbjct: 64 ---FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR 120
Query: 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
E+ K +D+ ++L+ +P ELS +QQR+ +AR P +LDE
Sbjct: 121 VE----EVAKILDIHHVLNHFP--------RELSGAQQQRVALARALVKDPSLLLLDE 166
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 32/160 (20%)
Query: 463 NLTLKVEPGSNLL-ITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP-- 519
L + E G + + GP G+GKS ++ G+ G + G +I +P
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG------ADITPLPPE 68
Query: 520 QRPYTAV---------GTLRDQLIYPL--TSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 568
+R V ++ + Y L E + E+ + + + +LLDR P
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVR----EMAEKLGIAHLLDRKP 124
Query: 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
LS GE+QR+ +AR +P+ +LDE SA
Sbjct: 125 --------ARLSGGERQRVALARALVIQPRLLLLDEPLSA 156
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 3e-08
Identities = 73/346 (21%), Positives = 130/346 (37%), Gaps = 50/346 (14%)
Query: 310 ESHIQQKFKAL-TRHMRVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFAGNL-KPDT 367
E + + F T + L W F + I++I L +
Sbjct: 219 EDNEAKNFDKKNTNFLTRALKHTRWNAYS--FAAINTVTDIGPIIVI--GVGAYLAISGS 274
Query: 368 STLGRAKMLSNLRYHTSVIISLFQSLGTLSISSRRLNRLSGYADRIHELMVISRELSIED 427
T+G + + + Y + LF L L S L + DR+ +L+ + I++
Sbjct: 275 ITVG--TLAAFVGY----LELLFGPLRRLVASFTTLTQSFASMDRVFQLI--DEDYDIKN 326
Query: 428 KS-----PQRNGSRNYFSEANYIEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNG 481
+ G I+ V + +++ L +E G + G +G
Sbjct: 327 GVGAQPIEIKQGR---------IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSG 377
Query: 482 SGKSSLFRVLGGLWPLVSGHIAKPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIY 535
GKS+L ++ + + SG I G L +I V Q T+++ ++
Sbjct: 378 GGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL 437
Query: 536 --PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPP--EKEIN-WGDELSLGEQQRLGMA 590
P +D+EV E K + + P + E+ G +LS G++QRL +A
Sbjct: 438 GRPTATDEEVV--------EAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 489
Query: 591 RLFYHKPKFAILDECTSAVTTDMEER-FCAKVRAM-GTSCITISHR 634
R+F + P ILDE TSA+ + E A + + ++HR
Sbjct: 490 RIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHR 535
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 30/162 (18%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGV-----GSDLNK---E 514
+ + + G +++ GP+GSGKS+ R L L G I G+ ++LNK E
Sbjct: 42 GINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101
Query: 515 IFYVPQR----PYTAVGTLRDQLIYPL----TSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
+ V QR P+ V L + + P+ ++ E M ELL V L+
Sbjct: 102 VGMVFQRFNLFPHMTV--LNNITLAPMKVRKWPREKAEAK---AM-ELLDKVGLKDKAHA 155
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
YP D LS G+ QR+ +AR +PK + DE TSA
Sbjct: 156 YP--------DSLSGGQAQRVAIARALAMEPKIMLFDEPTSA 189
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 4e-08
Identities = 50/222 (22%), Positives = 84/222 (37%), Gaps = 54/222 (24%)
Query: 445 IEFSGVKVVTPT-GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
++F V P NV V + LT + PG + GPNGSGKS++ +L L+ G +
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 503 AKPGVG-SDLN-----KEIFYVPQRPYTAVGTLRDQLIYPLT---SDQEVE--------- 544
G + ++ V Q P + R+ + Y LT + +E+
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAH 136
Query: 545 ----PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFA 600
G D E G++LS G++Q + +AR KP+
Sbjct: 137 DFISGFPQG--------------YDTEVGET----GNQLSGGQRQAVALARALIRKPRLL 178
Query: 601 ILDECTSAVTTDMEERFCAKV-----RAM---GTSCITISHR 634
ILD TSA+ + +V + + + I+ +
Sbjct: 179 ILDNATSALDAGNQ----LRVQRLLYESPEWASRTVLLITQQ 216
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 7e-08
Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 33/197 (16%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SD 510
+++++T ++PG + + GP GSGK+++ +L + + G I G+ S
Sbjct: 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSS 426
Query: 511 LNKEIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLK--NVD--LEYLL 564
L I V Q T+++ L Y P +D+E+ E K + D +++L
Sbjct: 427 LRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEI--------KEAAKLTHSDHFIKHLP 478
Query: 565 DRYPPEKEIN-WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA 623
+ Y E + G++LS G++Q L + R F PK ILDE TS V T E+ A
Sbjct: 479 EGY--ETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI---QAA 533
Query: 624 MG------TSCITISHR 634
M TS I I+HR
Sbjct: 534 MWKLMEGKTSII-IAHR 549
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 7e-08
Identities = 44/208 (21%), Positives = 76/208 (36%), Gaps = 54/208 (25%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
++ +++ V G LI GPNGSGKS+L V+ G G + K+I +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN------KDI--TNK 74
Query: 521 RPY--TAVGTLR-----------------------------DQLIYPLTSDQEVEPLTHG 549
P G +R + L Y +E E +
Sbjct: 75 EPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKA 134
Query: 550 GMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE----C 605
++L+ + L +L DR ELS G+ + + + R PK ++DE
Sbjct: 135 --FKILEFLKLSHLYDRK--------AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 606 TSAVTTDMEERFCAKVRAMGTSCITISH 633
+ D+ +++A G + + I H
Sbjct: 185 APGLAHDIFN-HVLELKAKGITFLIIEH 211
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 4e-07
Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 47/237 (19%)
Query: 445 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
++ V G ++ N+ L ++ G + I GP+GSGKS++ ++G L G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 502 IAKPGVG-SDL---------NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PL---T 547
+ + +DL +I +V Q+ + LI LT+ + VE PL
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQ-F--------NLIPLLTALENVELPLIFKY 112
Query: 548 HGGM---------VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPK 598
G M +E LK +LE + P ++LS G+QQR+ +AR + P
Sbjct: 113 RGAMSGEERRKRALECLKMAELEERFANHKP-------NQLSGGQQQRVAIARALANNPP 165
Query: 599 FAILDECT----SAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHD-VVLSLDGE 650
+ D+ T S + + G + + ++H + F + ++ DGE
Sbjct: 166 IILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGE 222
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 33/165 (20%)
Query: 457 GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKE- 514
G + + + LKV G + + G NG+GK++ + GL G I G D+ +
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF--NGQDITNKP 74
Query: 515 --------IFYVPQ--RPYTAVGTLRDQLI---YPLTSDQEVEPLTHGGMVELLKNVDLE 561
I VP+ R + + T+ + L+ Y + ++ DLE
Sbjct: 75 AHVINRMGIALVPEGRRIFPEL-TVYENLMMGAYNRKDKEGIKR-------------DLE 120
Query: 562 YLLDRYP--PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
++ +P E+ G LS GEQQ L + R +PK ++DE
Sbjct: 121 WIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 46/234 (19%), Positives = 73/234 (31%), Gaps = 24/234 (10%)
Query: 404 NRLSGYADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPT----GNV 459
++ Y L K N + E + + +
Sbjct: 390 THITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI 449
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVP 519
L+ L+++ I GPNG GKS+L R + V G + YV
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG--QVDGFPTQEEC------RTVYVE 501
Query: 520 QRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDEL 579
GT D + + V E +K+ +E+ I L
Sbjct: 502 HDI---DGTHSDTSVLDFVFESGVGTK------EAIKDKLIEFGFTDEMIAMPI---SAL 549
Query: 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISH 633
S G + +L +AR +LDE T+ + T + G + ITISH
Sbjct: 550 SGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 518
+ ++ + S + + GPNG+GKS+L VL G SG + + I Y+
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT---HENC--RIAYI 741
Query: 519 PQ 520
Q
Sbjct: 742 KQ 743
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 8e-05
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 33/173 (19%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG--VGSDLNKEIF 516
VL + ++L+ G + I G +GSGKS+ R + L G I G + +K+
Sbjct: 21 VL-KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 79
Query: 517 YVPQRPYTAVGTLRDQL--------IYP-LTSDQEV--EPLTHGGM---------VELLK 556
+ LR +L ++ +T + V P+ G+ ++ L
Sbjct: 80 LKVADK-NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLA 138
Query: 557 NVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSA 608
V + E +YP LS G+QQR+ +AR +P + DE TSA
Sbjct: 139 KVGIDERAQGKYP--------VHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 183
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 28/161 (17%)
Query: 457 GNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-VGSDL--- 511
GN + N+ LK++ G + + GP+GSGKS+L + G++ SG I ++L
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK 73
Query: 512 NKEIFYVPQR----PYTAVGTLRDQLIYPL----TSDQEVEPLTHGGMVELLKNVDLEYL 563
++ + V Q P+ V + +PL +E++ E+ K + ++ L
Sbjct: 74 DRNVGLVFQNWALYPHMTV---YKNIAFPLELRKAPREEIDKKVR----EVAKMLHIDKL 126
Query: 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
L+RYP +LS G+QQR+ +AR +P+ +LDE
Sbjct: 127 LNRYP--------WQLSGGQQQRVAIARALVKEPEVLLLDE 159
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1064 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 5e-31 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-30 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-29 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 6e-28 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 9e-28 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-27 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 9e-24 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-23 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-22 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-21 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 7e-21 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-20 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 8e-20 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-19 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-19 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-19 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-18 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 6e-18 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-17 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 9e-13 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-04 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.004 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 120 bits (303), Expect = 5e-31
Identities = 49/219 (22%), Positives = 94/219 (42%), Gaps = 22/219 (10%)
Query: 445 IEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
I+ V + +++ L +E G + G +G GKS+L ++ + + SG I
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 504 KPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLT--SDQEVEPLTHGGMVELL 555
G L +I V Q T+++ ++ +D+EV E
Sbjct: 77 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVV--------EAA 128
Query: 556 KNVDLEYLLDRYPP--EKEIN-WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612
K + + P + E+ G +LS G++QRL +AR+F + P ILDE TSA+ +
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 613 MEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649
E + + + + ++HR + + D ++ ++
Sbjct: 189 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIEN 227
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 119 bits (299), Expect = 2e-30
Identities = 50/227 (22%), Positives = 91/227 (40%), Gaps = 17/227 (7%)
Query: 425 IEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGK 484
+ +K Q NG R + S+ N + FS + GN +++N+ L +E G L ITG GSGK
Sbjct: 19 LLEKVQQSNGDRKHSSDENNVSFSHL---CLVGNPVLKNINLNIEKGEMLAITGSTGSGK 75
Query: 485 SSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE 544
+SL ++ G G I + + + Q + GT+++ +I+ ++ D+
Sbjct: 76 TSLLMLILGELEASEGIIK-------HSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRY 128
Query: 545 PLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+ E + LS G++ R+ +AR Y +LD
Sbjct: 129 KSVVKACQLQQDITKFAEQDNTVLGEGGVT----LSGGQRARISLARAVYKDADLYLLDS 184
Query: 605 CTSAVTTDMEERF---CAKVRAMGTSCITISHRPALVAFHDVVLSLD 648
+ EE+ C + I ++ + + D +L L
Sbjct: 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILH 231
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 115 bits (289), Expect = 3e-29
Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 17/216 (7%)
Query: 445 IEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP------L 497
+EF V P V N+ LK+ G + + G +GSGKS++ ++ + L
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 498 VSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557
+ GH + + L ++ V Q + T+ + + Y E + + E +
Sbjct: 74 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYA-----RTEEYSREQIEEAARM 128
Query: 558 VDLEYLLDRYP--PEKEIN-WGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
+++ + I G LS G++QR+ +AR ILDE TSA+ T+ E
Sbjct: 129 AYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 188
Query: 615 ERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
A + + + + I+HR + + D ++ ++
Sbjct: 189 RAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVE 224
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 111 bits (278), Expect = 6e-28
Identities = 49/215 (22%), Positives = 96/215 (44%), Gaps = 16/215 (7%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+ V ++ +++ + +P S + GP+G GKS++F +L + +G I
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 505 PGVG------SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNV 558
G + +I +V Q GT+R+ L Y L D E L +L
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQ-----VLDLA 116
Query: 559 DLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
++ P + G+ ++S G++QRL +AR F PK +LDE T+++ ++ E
Sbjct: 117 FARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176
Query: 616 RFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
+ ++ G + + I+HR + + D + ++
Sbjct: 177 MVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIE 211
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 110 bits (277), Expect = 9e-28
Identities = 44/214 (20%), Positives = 89/214 (41%), Gaps = 12/214 (5%)
Query: 445 IEFSGVKVVTPTGNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
I F ++ + ++ +N+ L ++ G + I G +GSGKS+L +++ + +G +
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 504 KPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKN 557
G + L +++ V Q ++ D + + + +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 558 VDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF 617
+ L G LS G++QR+ +AR + PK I DE TSA+ + E
Sbjct: 122 IS---ELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 618 CAKVRAM--GTSCITISHRPALVAFHDVVLSLDG 649
+ + G + I I+HR + V D ++ ++
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEK 212
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (271), Expect = 6e-27
Identities = 52/220 (23%), Positives = 92/220 (41%), Gaps = 20/220 (9%)
Query: 445 IEFSGVKVVTPTG--NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
++F V P ++++ LT + PG + GPNGSGKS++ +L L+ G +
Sbjct: 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 503 AKPGV------GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 556
G L++++ V Q P +L++ + Y LT +E +
Sbjct: 72 LLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTME-----EITAAAV 126
Query: 557 NVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAV---- 609
+ P + + +LS G++Q + +AR KP ILD+ TSA+
Sbjct: 127 KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 186
Query: 610 TTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDG 649
+E+ S + I+ +LV D +L L+G
Sbjct: 187 QLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEG 226
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 99.1 bits (247), Expect = 9e-24
Identities = 41/213 (19%), Positives = 80/213 (37%), Gaps = 36/213 (16%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
++ + V L L ++ G L++ GP+G GK++ R++ GL G I
Sbjct: 7 VKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 65
Query: 505 PGV----GSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE-PLTHGGM-------- 551
++ I V Q + +T + + PL
Sbjct: 66 GDRDVTYLPPKDRNISMVFQSY---------AVWPHMTVYENIAFPLKIKKFPKDEIDKR 116
Query: 552 -VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVT 610
+ + +E LL+RYP +LS G++QR+ +AR +P ++DE S +
Sbjct: 117 VRWAAELLQIEELLNRYP--------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 168
Query: 611 TDMEERFCAKVRAM----GTSCITISHRPALVA 639
+ A+++ + + I ++H
Sbjct: 169 AKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAM 201
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 98.4 bits (245), Expect = 2e-23
Identities = 57/229 (24%), Positives = 89/229 (38%), Gaps = 35/229 (15%)
Query: 445 IEFSGVKVVTPTGNVLVE---NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
I+ S + V G ++ N++L V G + G +G+GKS+L R + L G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 502 I---------AKPGVGSDLNKEIFYVPQRP-----YTAVGTLRDQLIYPLTSDQEVEPLT 547
+ + ++I + Q T G + L T EV+
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 548 HGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS 607
ELL V L D YP LS G++QR+ +AR PK + DE TS
Sbjct: 122 T----ELLSLVGLGDKHDSYP--------SNLSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 608 AV----TTDMEERFCAKVRAMGTSCITISHRPALVAF--HDVVLSLDGE 650
A+ T + E R +G + + I+H +V V + +GE
Sbjct: 170 ALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE 218
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 95.3 bits (237), Expect = 2e-22
Identities = 47/231 (20%), Positives = 80/231 (34%), Gaps = 52/231 (22%)
Query: 443 NYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
N + + VL + ++L+ G + I G +GSGKS+ R + L G I
Sbjct: 1 NKLHVIDLHKRYGGHEVL-KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 503 -------------------AKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEV 543
A L + V Q L +T + V
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHF---------NLWSHMTVLENV 110
Query: 544 --EPLTHGGM---------VELLKNVDL-EYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591
P+ G+ ++ L V + E +YP LS G+QQR+ +AR
Sbjct: 111 MEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP--------VHLSGGQQQRVSIAR 162
Query: 592 LFYHKPKFAILDECTSAVTTDMEE---RFCAKVRAMGTSCITISHRPALVA 639
+P + DE TSA+ ++ R ++ G + + ++H
Sbjct: 163 ALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFAR 213
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 91.4 bits (227), Expect = 4e-21
Identities = 47/231 (20%), Positives = 91/231 (39%), Gaps = 40/231 (17%)
Query: 445 IEFSGVKVVTPTGN---VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGH 501
I+ V G ++N+ L ++ G + I GP+GSGKS++ ++G L G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 502 IAKPGVG-SDLNKE---------IFYVPQRPY-TAVGTLRDQLIYPLT---------SDQ 541
+ + +DL+ + I +V Q+ + T + + PL ++
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 542 EVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAI 601
L M EL E + P ++LS G+QQR+ +AR + P +
Sbjct: 122 RKRALECLKMAEL-----EERFANHKP--------NQLSGGQQQRVAIARALANNPPIIL 168
Query: 602 LDECTSAV----TTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLD 648
D+ T A+ + + G + + ++H + F + ++ L
Sbjct: 169 ADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLK 219
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 90.9 bits (225), Expect = 7e-21
Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 25/223 (11%)
Query: 445 IEFSGVKVVTPTGNVL-VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
I V V G V+ ++N+ + +E G I GP+G+GK++ R++ GL +G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 504 KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS-DQEVEPLTHGGM---------VE 553
N ++ P+ + L LT+ + PLT+ M E
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 554 LLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV---- 609
+ K +D+ ++L+ +P ELS +QQR+ +AR P +LDE S +
Sbjct: 124 VAKILDIHHVLNHFP--------RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 610 TTDMEERFCAKVRAMGTSCITISHRPALVAF--HDVVLSLDGE 650
+G + + +SH PA + V + + G+
Sbjct: 176 RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGK 218
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 87.7 bits (217), Expect = 6e-20
Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 22/185 (11%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-----DL 511
+++ ++ ++E G + GPNG+GK++ R++ L SG + G ++
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEV 73
Query: 512 NKEIFYVPQRP-----YTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
K I Y+P+ + LR + +S E+E + + L +
Sbjct: 74 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE----RATEIAGLGEKIKD 129
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGT 626
S G ++L +AR P+ AILDE TS + ++
Sbjct: 130 RV--------STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 181
Query: 627 SCITI 631
+TI
Sbjct: 182 EGLTI 186
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 88.1 bits (218), Expect = 8e-20
Identities = 43/207 (20%), Positives = 74/207 (35%), Gaps = 32/207 (15%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD------ 510
++ +++ V G LI GPNGSGKS+L V+ G G +
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 75
Query: 511 -LNKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGG-------------MVELL 555
+ I Q P T+ + L+ E + ++L
Sbjct: 76 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 135
Query: 556 KNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV---TTD 612
+ + L +L DR ELS G+ + + + R PK ++DE + V
Sbjct: 136 EFLKLSHLYDRKA--------GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 187
Query: 613 MEERFCAKVRAMGTSCITISHRPALVA 639
+++A G + + I HR +V
Sbjct: 188 DIFNHVLELKAKGITFLIIEHRLDIVL 214
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 86.5 bits (214), Expect = 2e-19
Identities = 45/207 (21%), Positives = 82/207 (39%), Gaps = 25/207 (12%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
V ++L+V+ G +++ GP+G GK++ R++ GL G I ++ +VP
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 521 RPYTAVGTLRDQLIYP--LTSDQEVEPLTHGGM---------VELLKNVDLEYLLDRYPP 569
+ + +YP D PL + E+ + + L LL+R P
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP- 137
Query: 570 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS----AVTTDMEERFCAKVRAMG 625
ELS G++QR+ + R KP+ ++DE S + M R +G
Sbjct: 138 -------RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190
Query: 626 TSCITISHRPALVAF--HDVVLSLDGE 650
+ I ++H + + G
Sbjct: 191 VTTIYVTHDQVEAMTMGDRIAVMNRGV 217
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 85.0 bits (210), Expect = 2e-19
Identities = 35/195 (17%), Positives = 79/195 (40%), Gaps = 19/195 (9%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
+E + V ++E +T+ +E G+ + GPNG GK++L + + + G I
Sbjct: 3 LEIRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 60
Query: 505 PGV-GSDLNKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY 562
GV + + +IF++P+ ++ D L + + +++ L++V++
Sbjct: 61 NGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG--VKVNKNEIMDALESVEVLD 118
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEERFC 618
L + LS G +R+ +A + +LD+ A+ + +
Sbjct: 119 LKKKLGE---------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSIL 169
Query: 619 AKVRAMGTSCITISH 633
++ G I+
Sbjct: 170 EILKEKGIVIISSRE 184
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 85.8 bits (212), Expect = 3e-19
Identities = 40/205 (19%), Positives = 75/205 (36%), Gaps = 28/205 (13%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP-----LVSGHIAKPGVGSDLNKEI 515
+ L+ +V G L + GPNG+GKS+L + G+ +G + + L
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR 74
Query: 516 FYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINW 575
Y+ Q+ T + D+ L + ++ + L+ L R
Sbjct: 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN----DVAGALALDDKLGRST------- 123
Query: 576 GDELSLGEQQRLGMARLFYH-------KPKFAILDECTSAVTTDMEERFCAKVRAM---G 625
++LS GE QR+ +A + + +LDE +++ + + A+ G
Sbjct: 124 -NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQG 182
Query: 626 TSCITISHRPALVAFH-DVVLSLDG 649
+ + SH H L G
Sbjct: 183 LAIVMSSHDLNHTLRHAHRAWLLKG 207
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 83.5 bits (206), Expect = 2e-18
Identities = 42/217 (19%), Positives = 87/217 (40%), Gaps = 20/217 (9%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
++ V V +++ L + G ++ GP+G GKS+L R++ GL + SG +
Sbjct: 1 VQLQNVTKAWGEVVVS-KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 59
Query: 505 PGVG----SDLNKEIFYVPQRPY-TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVD 559
+ + V Q ++ + + + L + + + + ++ + +
Sbjct: 60 GEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ 119
Query: 560 LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDE----CTSAVTTDMEE 615
L +LLDR P LS G++QR+ + R +P +LDE +A+ M
Sbjct: 120 LAHLLDRKP--------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 171
Query: 616 RFCAKVRAMGTSCITISHRPALVAF--HDVVLSLDGE 650
+ +G + I ++H +V+ G
Sbjct: 172 EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 208
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 82.3 bits (203), Expect = 6e-18
Identities = 36/194 (18%), Positives = 65/194 (33%), Gaps = 19/194 (9%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI--------AKPGVG 508
++ + LKV G + + G NG+GK++ + GL G I KP
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 509 SDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 568
+ R T+ + L+ + ++ E + L+ L +
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV---TTDMEERFCAKVRAMG 625
LS GEQQ L + R +PK ++DE + + K+ G
Sbjct: 138 --------GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG 189
Query: 626 TSCITISHRPALVA 639
T+ + +
Sbjct: 190 TTILLVEQNALGAL 203
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 79.0 bits (194), Expect = 7e-17
Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 24/194 (12%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
N ++NL+LKVE G +I GP G+GK+ ++ G SG I G
Sbjct: 12 KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDG-----KDVTD 66
Query: 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV-------ELLKNVDLEYLLDRYPP 569
P++ A L + + +E + + +++ +E+LLDR P
Sbjct: 67 LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL 126
Query: 570 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEERFCAKVRAMG 625
LS GEQQR+ +AR PK +LDE SA+ + E +
Sbjct: 127 --------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK 178
Query: 626 TSCITISHRPALVA 639
+ + I+H
Sbjct: 179 LTVLHITHDQTEAR 192
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 67.0 bits (163), Expect = 9e-13
Identities = 41/186 (22%), Positives = 71/186 (38%), Gaps = 20/186 (10%)
Query: 463 NLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG----SDLNKEIFYV 518
N+ ++ ++ GP G+GKS ++ G+ G + G + I +V
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 519 PQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMV-ELLKNVDLEYLLDRYPPEKEINWGD 577
PQ A+ + VE + V E+ + + + +LLDR P
Sbjct: 76 PQ--DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP--------A 125
Query: 578 ELSLGEQQRLGMARLFYHKPKFAILDECTS----AVTTDMEERFCAKVRAMGTSCITISH 633
LS GE+QR+ +AR +P+ +LDE S + E R + ++H
Sbjct: 126 RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH 185
Query: 634 RPALVA 639
A
Sbjct: 186 DLIEAA 191
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 56.2 bits (134), Expect = 2e-09
Identities = 18/178 (10%), Positives = 43/178 (24%), Gaps = 28/178 (15%)
Query: 474 LLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQL 533
++ITG G GK++L + + + V T +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVR----------------DPETKKRTG 46
Query: 534 IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLF 593
+T++ + + + ++ E
Sbjct: 47 FRIITTEGKKKIFSSKFFTSKKLVGSYG--VNVQYF--------EELAIPILERAYREAK 96
Query: 594 YHKPKFAILDECTSAVTTDMEERFCAK--VRAMGTSCITISHRPALVAFHDVVLSLDG 649
+ K I+DE + R + + + + + + L G
Sbjct: 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPG 154
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1064 | |||
| d2bhua3 | 420 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d1ejda_ | 419 | UDP-N-acetylglucosamine enolpyruvyl transferase (E | 100.0 | |
| d2df7a1 | 419 | Birnavirus VP2 {Infectious bursal disease virus [T | 100.0 | |
| d1om4a_ | 418 | Nitric oxide (NO) synthase oxygenase domain {Rat ( | 100.0 | |
| d2gp4a2 | 418 | 6-phosphogluconate dehydratase EDD {Shewanella one | 100.0 | |
| d1f61a_ | 418 | Isocitrate lyase {Mycobacterium tuberculosis [TaxI | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1q7ea_ | 417 | Hypothetical protein YfdW {Escherichia coli [TaxId | 100.0 | |
| d3bona1 | 417 | Botulinum neurotoxin {Clostridium botulinum, serot | 100.0 | |
| d1ltka_ | 417 | Phosphoglycerate kinase {Malaria parasite (Plasmod | 100.0 | |
| d2csga1 | 417 | Hypothetical protein YbiU {Salmonella typhimurium | 100.0 | |
| d1w6ga1 | 417 | Copper amine oxidase, domain 3 {Arthrobacter globi | 100.0 | |
| d1gff1_ | 417 | Microvirus capsid proteins {Bacteriophage G4 [TaxI | 100.0 | |
| d1vema2 | 417 | Bacterial beta-amylase {Bacillus cereus [TaxId: 13 | 100.0 | |
| d1q2oa_ | 416 | Nitric oxide (NO) synthase oxygenase domain {Cow ( | 100.0 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 100.0 | |
| d1d8wa_ | 416 | L-rhamnose isomerase {Escherichia coli [TaxId: 562 | 100.0 | |
| d2vnud4 | 416 | Exosome complex exonuclease RRP44 {Saccharomyces c | 100.0 | |
| d1igwa_ | 416 | Isocitrate lyase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1pb1a_ | 416 | Isocitrate dehydrogenase, ICDH {Escherichia coli [ | 100.0 | |
| d1dnva_ | 415 | Densovirus capsid protein {Galleria mellonella den | 100.0 | |
| d1so2a_ | 415 | cGMP-inhibited 3',5'-cyclic phosphodiesterase B, p | 100.0 | |
| d2ieaa2 | 415 | Pyruvate dehydrogenase E1 component, PP module {Es | 100.0 | |
| d16pka_ | 415 | Phosphoglycerate kinase {Trypanosoma brucei [TaxId | 100.0 | |
| d1qpga_ | 415 | Phosphoglycerate kinase {Baker's yeast (Saccharomy | 100.0 | |
| d2qeec1 | 415 | Uncharacterized protein BH0493 {Bacillus haloduran | 100.0 | |
| d1s5ja2 | 415 | Family B DNA polymerase {Sulfolobus solfataricus [ | 100.0 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 100.0 | |
| d2b8na1 | 414 | Putative glycerate kinase (hypothetical protein TM | 100.0 | |
| d1o20a_ | 414 | Gamma-glutamyl phosphate reductase {Thermotoga mar | 100.0 | |
| d1t0la_ | 414 | NADP-dependent isocitrate dehydrogenase {Human (Ho | 100.0 | |
| d1vh4a_ | 413 | Stabilizer of iron transporter SufD {Escherichia c | 100.0 | |
| d1hdia_ | 413 | Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: | 100.0 | |
| d2qgma1 | 413 | Succinoglycan biosynthesis protein BC3205 {Bacillu | 100.0 | |
| d1lwda_ | 413 | NADP-dependent isocitrate dehydrogenase {Pig (Sus | 100.0 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 100.0 | |
| d1zjca1 | 413 | Aminopeptidase S, AMPS {Staphylococcus aureus [Tax | 100.0 | |
| d1a0tp_ | 413 | Sucrose-specific porin {Enterobacterium (Salmonell | 100.0 | |
| d1ulva1 | 413 | Glucodextranase, domain A {Arthrobacter globiformi | 100.0 | |
| d1ocka_ | 412 | Malonamidase E2 {Bradyrhizobium japonicum [TaxId: | 100.0 | |
| d1yzya1 | 412 | Hypothetical protein HI1011 {Haemophilus influenza | 100.0 | |
| d1rxxa_ | 412 | Arginine deiminase {Pseudomonas aeruginosa [TaxId: | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1ufaa2 | 412 | Hypothetical protein TT1467, N-terminal domain {Th | 100.0 | |
| d1t3ca_ | 411 | Botulinum neurotoxin {Clostridium botulinum, serot | 100.0 | |
| d2afaa1 | 411 | Putative NAG isomerase YihS {Salmonella typhimuriu | 100.0 | |
| d1ux5a_ | 411 | Bni1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 100.0 | |
| d1izoa_ | 411 | Cytochrome p450 152a1 (Bs-beta) {Bacillus subtilis | 100.0 | |
| d2ccaa1 | 410 | Catalase-peroxidase KatG {Mycobacterium tuberculos | 100.0 | |
| d1p1ja1 | 410 | Myo-inositol 1-phosphate synthase {Baker's yeast ( | 100.0 | |
| d1kfsa2 | 410 | DNA polymerase I (Klenow fragment) {Escherichia co | 100.0 | |
| d1uuqa_ | 410 | Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} | 100.0 | |
| d1s5ja1 | 410 | Exonuclease domain of family B DNA polymerases {Su | 100.0 | |
| d2cmza1 | 409 | Spike glycoprotein {Vesicular stomatitis indiana v | 100.0 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 100.0 | |
| d1qtma2 | 409 | DNA polymerase I (Klenow fragment) {Thermus aquati | 100.0 | |
| d1b25a1 | 409 | Formaldehyde ferredoxin oxidoreductase {Archaeon P | 100.0 | |
| d2g0da1 | 409 | Nisin biosynthesis protein NisC {Lactococcus lacti | 100.0 | |
| d1s9ra_ | 409 | Arginine deiminase {Mycoplasma arginini [TaxId: 20 | 100.0 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 100.0 | |
| d1dkla_ | 409 | Phytase (myo-inositol-hexakisphosphate-3-phosphohy | 100.0 | |
| d1wzaa2 | 409 | Bacterial alpha-amylase {Halothermothrix orenii [T | 100.0 | |
| d1r76a_ | 408 | Polygalacturonic acid lyase (pectate lyase) {Azosp | 100.0 | |
| d1f1oa_ | 408 | Adenylosuccinate lyase {Bacillus subtilis [TaxId: | 100.0 | |
| d1n11a_ | 408 | Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1h4pa_ | 408 | Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom | 100.0 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 100.0 | |
| d2hhva2 | 408 | DNA polymerase I (Klenow fragment) {Bacillus stear | 100.0 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 100.0 | |
| d1qs0a_ | 407 | 2-oxoisovalerate dehydrogenase (E1B), PP module {P | 100.0 | |
| d1eu8a_ | 407 | D-maltodextrin-binding protein, MBP {Archaeon Ther | 100.0 | |
| d1qhoa4 | 407 | Cyclodextrin glycosyltransferase {Bacillus stearot | 100.0 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 100.0 | |
| d1itka1 | 406 | Catalase-peroxidase KatG {Archaeon Haloarcula mari | 100.0 | |
| d1mwva1 | 406 | Catalase-peroxidase KatG {Burkholderia pseudomalle | 100.0 | |
| d1ub2a1 | 406 | Catalase-peroxidase KatG {Synechococcus sp. pcc 79 | 100.0 | |
| d1ei6a_ | 406 | Phosphonoacetate hydrolase {Pseudomonas fluorescen | 100.0 | |
| d2ayia1 | 406 | Aminopeptidase T {Thermus thermophilus [TaxId: 274 | 100.0 | |
| d3bmva4 | 406 | Cyclodextrin glycosyltransferase {Thermoanaerobact | 100.0 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 100.0 | |
| d2nwwa1 | 405 | Proton glutamate symport protein {Pyrococcus horik | 100.0 | |
| d1h6za3 | 405 | Pyruvate phosphate dikinase, N-terminal domain {Tr | 100.0 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 100.0 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 100.0 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 100.0 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 100.0 | |
| d1re9a_ | 404 | Cytochrome P450-CAM {Pseudomonas putida [TaxId: 30 | 100.0 | |
| d1h12a_ | 404 | Endo-1,4-beta-xylanase {Pseudoalteromonas haloplan | 100.0 | |
| d2b5dx2 | 404 | Alpha-amylase AmyC {Thermotoga maritima [TaxId: 23 | 100.0 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 100.0 | |
| d1uyra2 | 404 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 100.0 | |
| d1gwia_ | 403 | Cyp154c1 monooxygenase {Streptomyces coelicolor [T | 100.0 | |
| d1xksa_ | 403 | Nuclear pore complex protein Nup133 {Human (Homo s | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1ueda_ | 403 | p450 monoxygenase OxyC {Amycolatopsis orientalis [ | 100.0 | |
| d3b55a1 | 403 | Succinoglycan biosynthesis protein BC3120 {Bacillu | 100.0 | |
| d1hx0a2 | 403 | Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982 | 100.0 | |
| d1xk7a1 | 402 | Crotonobetainyl-CoA:carnitine CoA-transferase, Cai | 100.0 | |
| d1dofa_ | 402 | Adenylosuccinate lyase {Archaeon Pyrobaculum aerop | 100.0 | |
| d2g5da1 | 402 | Membrane-bound lytic murein transglycosylase A, ML | 100.0 | |
| d1fp3a_ | 402 | N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) | 100.0 | |
| d1z8oa1 | 402 | Cytochrome P450-ERYF {Saccharopolyspora erythraea | 100.0 | |
| g1w2w.1 | 402 | Putative methylthioribose-1-phosphate isomerase Yp | 100.0 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 100.0 | |
| d1iira_ | 401 | UDP-glucosyltransferase GtfB {Amycolatopsis orient | 100.0 | |
| d1odoa_ | 401 | Cyp154a1 monooxygenase {Streptomyces coelicolor [T | 100.0 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 100.0 | |
| d1rrva_ | 401 | TDP-vancosaminyltransferase GftD {Amycolatopsis or | 100.0 | |
| d1q5da_ | 401 | Cytochrome P450epok {Sorangium cellulosum [TaxId: | 100.0 | |
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d1jdpa_ | 401 | Hormone binding domain of the atrial natriuretic p | 100.0 | |
| d2h6fb1 | 401 | Protein farnesyltransferase, beta-subunit {Human ( | 100.0 | |
| d2r7da2 | 401 | Ribonuclease II family protein DR0020 {Deinococcus | 100.0 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 100.0 | |
| d1ru4a_ | 400 | Pectate transeliminase {Erwinia chrysanthemi [TaxI | 100.0 | |
| d3ovwa_ | 400 | Cellobiohydrolase I (cellulase, Endoglucanase I, C | 100.0 | |
| d1inpa_ | 400 | Inositol polyphosphate 1-phosphatase {Cow (Bos tau | 100.0 | |
| d2olua2 | 400 | Penicillin-binding protein 2, PBP2 {Staphylococcus | 100.0 | |
| d1eh9a3 | 400 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d1ojja_ | 399 | Cellobiohydrolase I (cellulase, Endoglucanase I, C | 100.0 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 100.0 | |
| d1jfba_ | 399 | Cytochrome P450-NOR, nitric reductase {Fungus (Fus | 100.0 | |
| d1s1fa_ | 399 | Cyp158a2 {Streptomyces coelicolor [TaxId: 1902]} | 100.0 | |
| d1bn8a_ | 399 | Pectate lyase {Bacillus subtilis [TaxId: 1423]} | 100.0 | |
| d2ah2a2 | 399 | Trypanosoma sialidase {Parasitic flagellate protoz | 100.0 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 100.0 | |
| d1vpea_ | 398 | Phosphoglycerate kinase {Thermotoga maritima [TaxI | 100.0 | |
| d1vlja_ | 398 | NADH-dependent butanol dehydrogenase A (TM0820) {T | 100.0 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 100.0 | |
| d1vkoa1 | 397 | Myo-inositol 1-phosphate synthase {Caenorhabditis | 100.0 | |
| d1q1la_ | 397 | Chorismate synthase, AroC {Aquifex aeolicus [TaxId | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 100.0 | |
| d1lf6a1 | 397 | Bacterial glucoamylase, C-terminal domain {Thermoa | 100.0 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d1m7xa3 | 396 | 1,4-alpha-glucan branching enzyme, central domain | 100.0 | |
| d1io1a_ | 395 | Phase 1 flagellin {Salmonella typhimurium [TaxId: | 100.0 | |
| g1f8v.1 | 395 | Alphanodavirus capsid protein {Pariacoto virus [Ta | 100.0 | |
| d2bfda1 | 395 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 100.0 | |
| d1aora1 | 395 | Aldehyde ferredoxin oxidoreductase {Archaeon Pyroc | 100.0 | |
| d1nw1a_ | 395 | Choline kinase {Caenorhabditis elegans [TaxId: 623 | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d1n40a_ | 395 | Cyp121 monooxygenase (P450 Mt2) {Mycobacterium tub | 100.0 | |
| d1w36b2 | 395 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 100.0 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 100.0 | |
| d1phpa_ | 394 | Phosphoglycerate kinase {Bacillus stearothermophil | 100.0 | |
| d1u1ha1 | 394 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d1q8ia2 | 394 | Family B DNA polymerase {Escherichia coli [TaxId: | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d2pb1a1 | 394 | Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) | 100.0 | |
| d1atia2 | 394 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 100.0 | |
| d1lfka_ | 394 | p450 monoxygenase OxyB {Amycolatopsis orientalis [ | 100.0 | |
| d1ldja2 | 394 | Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax | 100.0 | |
| d2d3na2 | 394 | Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 100.0 | |
| d1xlma_ | 393 | D-xylose isomerase {Arthrobacter, strain b3728 [Ta | 100.0 | |
| d1kwga2 | 393 | A4 beta-galactosidase {Thermus thermophilus [TaxId | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1g8ma2 | 393 | AICAR transformylase domain of bifunctional purine | 100.0 | |
| d1hvxa2 | 393 | Bacterial alpha-amylase {Bacillus stearothermophil | 100.0 | |
| d1e43a2 | 393 | Bacterial alpha-amylase {Chimera (Bacillus amyloli | 100.0 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 100.0 | |
| d1yvua2 | 392 | Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax | 100.0 | |
| d2d0ta1 | 392 | Indoleamine 2,3-dioxygenase {Human (Homo sapiens) | 100.0 | |
| d2pula1 | 392 | Methylthioribose kinase MtnK {Bacillus subtilis [T | 100.0 | |
| d1xima_ | 392 | D-xylose isomerase {Actinoplanes missouriensis [Ta | 100.0 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 100.0 | |
| d1pn3a_ | 391 | TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi | 100.0 | |
| d1nt4a_ | 391 | Glucose-1-phosphatase {Escherichia coli [TaxId: 56 | 100.0 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 100.0 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 100.0 | |
| d1lwha2 | 391 | 4-alpha-glucanotransferase {Thermotoga maritima [T | 100.0 | |
| d4ubpc2 | 390 | alpha-subunit of urease, catalytic domain {Bacillu | 100.0 | |
| d1v6sa_ | 390 | Phosphoglycerate kinase {Thermus thermophilus [Tax | 100.0 | |
| d1nsca_ | 390 | Influenza neuraminidase {Influenza B virus, differ | 100.0 | |
| d1qopb_ | 390 | Tryptophan synthase, beta-subunit {Salmonella typh | 100.0 | |
| d1oj7a_ | 390 | Hypothetical oxidoreductase yqhD {Escherichia coli | 100.0 | |
| d1ud2a2 | 390 | Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta | 100.0 | |
| d1e9yb2 | 389 | alpha-subunit of urease, catalytic domain {Helicob | 100.0 | |
| d1sg6a_ | 389 | Dehydroquinate synthase, DHQS {Aspergillus nidulan | 100.0 | |
| d1jiha2 | 389 | DNA polymerase eta {Baker's yeast (Saccharomyces c | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d2o3ia1 | 389 | Hypothetical protein CV3147 {Chromobacterium viola | 100.0 | |
| d1f8ea_ | 388 | Influenza neuraminidase {Influenza A virus, differ | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 100.0 | |
| d1u7la_ | 388 | Vacuolar ATP synthase subunit C {Baker's yeast (Sa | 100.0 | |
| d1qxoa_ | 388 | Chorismate synthase, AroC {Streptococcus pneumonia | 100.0 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 100.0 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 100.0 | |
| d2dcfa1 | 388 | 6-aminohexanoate-dimer hydrolase NylC {Flavobacter | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d2py5a2 | 388 | phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: | 100.0 | |
| d1q8ia1 | 388 | Exonuclease domain of family B DNA polymerases {Es | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 100.0 | |
| d1x38a1 | 388 | Beta-D-glucan exohydrolase, N-terminal domain {Bar | 100.0 | |
| d2ex0a1 | 387 | Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteur | 100.0 | |
| d1zeea1 | 387 | Hypothetical protein SO4414 {Shewanella oneidensis | 100.0 | |
| d2aepa1 | 387 | Influenza neuraminidase {Influenza A virus, differ | 100.0 | |
| d1ur4a_ | 387 | Beta-1,4-galactanase {Bacillus licheniformis [TaxI | 100.0 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 100.0 | |
| d1zsqa2 | 387 | Myotubularin-related protein 2, C-terminal domain | 100.0 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 100.0 | |
| d1bxba_ | 387 | D-xylose isomerase {Thermus aquaticus, subsp. Ther | 100.0 | |
| d2qp8a1 | 387 | beta-secretase (memapsin) {Human (Homo sapiens) [T | 100.0 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 100.0 | |
| d1r6ta2 | 386 | Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo | 100.0 | |
| d1v8za1 | 386 | Tryptophan synthase, beta-subunit {Archaeon Pyroco | 100.0 | |
| d1muwa_ | 386 | D-xylose isomerase {Streptomyces olivochromogenes | 100.0 | |
| d3c10a1 | 386 | Histone deacetylase 7, HDAC7 {Human (Homo sapiens) | 100.0 | |
| d1v5da_ | 386 | Chitosanase {Bacillus sp., strain k17 [TaxId: 1409 | 100.0 | |
| d1ejxc2 | 385 | alpha-subunit of urease, catalytic domain {Klebsie | 100.0 | |
| d1rrma_ | 385 | Lactaldehyde reductase FucO {Escherichia coli [Tax | 100.0 | |
| d1xmxa_ | 385 | Hypothetical protein VC1899 {Vibrio cholerae [TaxI | 100.0 | |
| d1ir6a_ | 385 | Exonuclease RecJ {Thermus thermophilus [TaxId: 274 | 100.0 | |
| d1uhga_ | 385 | Ovalbumin {Hen (Gallus gallus) [TaxId: 9031]} | 100.0 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 100.0 | |
| d1n97a_ | 385 | Cyp175a1 {Thermus thermophilus [TaxId: 274]} | 100.0 | |
| d2c5wb1 | 385 | Penicillin-binding protein 1a, transpeptidase doma | 100.0 | |
| d2ix0a4 | 385 | Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 | 100.0 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 100.0 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 100.0 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 100.0 | |
| d1mtyb_ | 384 | Methane monooxygenase hydrolase beta subunit {Meth | 100.0 | |
| d3c0na2 | 384 | (Pro)aerolysin, pore-forming lobe {Aeromonas hydro | 100.0 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 100.0 | |
| d1hn0a1 | 384 | Chondroitin ABC lyase I {Proteus vulgaris [TaxId: | 100.0 | |
| d2fvka2 | 384 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 100.0 | |
| d1vz6a_ | 383 | Glutamate N-acetyltransferase 2 (ornithine acetylt | 100.0 | |
| d1u7ga_ | 383 | Ammonium transporter AmtB {Escherichia coli [TaxId | 100.0 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 100.0 | |
| d1mhyb_ | 383 | Methane monooxygenase hydrolase beta subunit {Meth | 100.0 | |
| d1bo1a_ | 383 | Phosphatidylinositol phosphate kinase IIbeta, PIPK | 100.0 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1imva_ | 383 | Pigment epithelium-derived factor, PEDF {Human (Ho | 100.0 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1t1ua1 | 382 | Choline O-acetyltransferase {Rat (Rattus norvegicu | 100.0 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1wkva1 | 382 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1ea9c3 | 382 | Maltogenic amylase, central domain {Bacillus sp., | 100.0 | |
| d1xl7a1 | 382 | Peroxisomal carnitine O-octanoyltransferase, COT { | 100.0 | |
| d1wzla3 | 382 | Maltogenic amylase, central domain {Thermoactinomy | 100.0 | |
| d1j0ha3 | 382 | Neopullulanase, central domain {Bacillus stearothe | 100.0 | |
| d2bo4a1 | 381 | Mannosylglycerate synthase, MGS {Rhodothermus mari | 100.0 | |
| d1t6ex_ | 381 | Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu | 100.0 | |
| d1by7a_ | 381 | Plasminogen activator inhibitor-2 {Human (Homo sap | 100.0 | |
| d1odza_ | 381 | Mannanase A, ManA {Pseudomonas cellulosa (Cellvibr | 100.0 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 100.0 | |
| d3bvua3 | 381 | Golgi alpha-mannosidase II {Fruit fly (Drosophila | 100.0 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 100.0 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 100.0 | |
| d2guya2 | 381 | Fungal alpha-amylases {Aspergillus oryzae, Taka-am | 100.0 | |
| d2aaaa2 | 381 | Fungal alpha-amylases {Aspergillus niger, acid amy | 100.0 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 100.0 | |
| d1vbga3 | 380 | Pyruvate phosphate dikinase, N-terminal domain {Ma | 100.0 | |
| d1qyia_ | 380 | Hypothetical protein MW1667 (SA1546) {Staphylococc | 100.0 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 100.0 | |
| d1edga_ | 380 | Endoglucanase CelA {Clostridium cellulolyticum [Ta | 100.0 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 100.0 | |
| d1elja_ | 380 | D-maltodextrin-binding protein, MBP {Archaeon Pyro | 100.0 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 100.0 | |
| d1lj5a_ | 379 | Plasminogen activator inhibitor-1 {Human (Homo sap | 100.0 | |
| d3sila_ | 379 | Salmonella sialidase {Salmonella typhimurium, stra | 100.0 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 100.0 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 100.0 | |
| d1xqga_ | 378 | Maspin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1jaea2 | 378 | Animal alpha-amylase {Yellow mealworm (Tenebrio mo | 100.0 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 100.0 | |
| d1o6ca_ | 377 | UDP-N-acetylglucosamine 2-epimerase {Bacillus subt | 100.0 | |
| d1a59a_ | 377 | Citrate synthase {Antarctic bacterium DS2-3R [TaxI | 100.0 | |
| d2d5ja1 | 377 | Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 | 100.0 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 100.0 | |
| d2i71a1 | 377 | Hypothetical protein SSO1389 {Sulfolobus solfatari | 100.0 | |
| d1ci9a_ | 377 | Esterase EstB {Burkholderia gladioli [TaxId: 28095 | 100.0 | |
| d1jmma_ | 377 | V-region of surface antigen I/II (SA I/II, PAC) {S | 100.0 | |
| d1nm8a1 | 377 | Carnitine acetyltransferase {Human (Homo sapiens) | 100.0 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 100.0 | |
| d1f6da_ | 376 | UDP-N-acetylglucosamine 2-epimerase {Escherichia c | 100.0 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 100.0 | |
| d1k9oi_ | 376 | Alaserpin (serpin 1) {Tobacco hornworm (Manduca se | 100.0 | |
| d2v3qa1 | 376 | PstS-like phosphate-binding protein {Human (Homo s | 100.0 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 100.0 | |
| d1wu4a1 | 376 | Xylanase Y {Bacillus halodurans [TaxId: 86665]} | 100.0 | |
| d1bhea_ | 376 | Polygalacturonase {Erwinia carotovora, subsp. caro | 100.0 | |
| d2fug41 | 375 | NADH-quinone oxidoreductase chain 4, Nqo4 {Thermus | 100.0 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| g1hle.1 | 375 | Elastase inhibitor {Horse (Equus caballus) [TaxId: | 100.0 | |
| d1kbla3 | 375 | Pyruvate phosphate dikinase, N-terminal domain {Cl | 100.0 | |
| d1ih7a1 | 375 | Exonuclease domain of family B DNA polymerases {Ba | 100.0 | |
| d1txka2 | 374 | Glucans biosynthesis protein G (MdoG, OpgG), N-ter | 100.0 | |
| d1ioma_ | 374 | Citrate synthase {Thermus thermophilus [TaxId: 274 | 100.0 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 100.0 | |
| d1nd7a_ | 374 | WW domain-containing protein 1, WWP1 {Human (Homo | 100.0 | |
| d2a0ua1 | 374 | Initiation factor 2b {Leishmania major [TaxId: 566 | 100.0 | |
| d1rp4a_ | 374 | Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast | 100.0 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 100.0 | |
| d1so7a_ | 374 | Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d2bvca2 | 374 | Glutamine synthetase, C-terminal domain {Mycobacte | 100.0 | |
| d1kfwa1 | 374 | Psychrophilic chitinase B {Arthrobacter sp., tad20 | 100.0 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 100.0 | |
| d1v4va_ | 373 | UDP-N-acetylglucosamine 2-epimerase {Thermus therm | 100.0 | |
| d1miqa_ | 373 | Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo | 100.0 | |
| d1ogmx2 | 373 | Dextranase, catalytic domain {Penicillium miniolut | 100.0 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 100.0 | |
| d1qo0a_ | 373 | Amide receptor/negative regulator of the amidase o | 100.0 | |
| d1m0wa2 | 373 | Eukaryotic glutathione synthetase ATP-binding doma | 100.0 | |
| d1r5ya_ | 372 | Queosine tRNA-guanine transglycosylase {Zymomonas | 100.0 | |
| d1noya_ | 372 | Exonuclease domain of family B DNA polymerases {Ba | 100.0 | |
| d1c3pa_ | 372 | HDAC homologue {Aquifex aeolicus [TaxId: 63363]} | 100.0 | |
| d1qlpa_ | 372 | Antitrypsin, alpha-1 {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1j58a_ | 372 | Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil | 100.0 | |
| d1vkpa_ | 372 | Agmatine iminohydrolase {Thale-cress (Arabidopsis | 100.0 | |
| d1teda_ | 372 | Polyketide synthase PKS18 {Mycobacterium tuberculo | 100.0 | |
| g1htr.1 | 372 | Pepsin(ogen) {Human (Homo sapiens), progastricsin | 100.0 | |
| d1mkfa_ | 371 | Viral chemokine binding protein m3 {Murid herpesvi | 100.0 | |
| d1r53a_ | 371 | Chorismate synthase, AroC {Baker's yeast (Saccharo | 100.0 | |
| d1c8ba_ | 371 | Germination protease {Bacillus megaterium [TaxId: | 100.0 | |
| d1to6a_ | 371 | Glycerate kinase GlxK {Neisseria meningitidis, (se | 100.0 | |
| d1aj8a_ | 371 | Citrate synthase {Archaeon Pyrococcus furiosus [Ta | 100.0 | |
| d1n7oa1 | 371 | Hyaluronate lyase {Streptococcus pneumoniae [TaxId | 100.0 | |
| d1f1sa1 | 371 | Hyaluronate lyase {Streptococcus agalactiae [TaxId | 100.0 | |
| d1eg1a_ | 371 | Cellobiohydrolase I (cellulase, Endoglucanase I, C | 100.0 | |
| d1r85a_ | 371 | Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 100.0 | |
| d2dexx3 | 370 | Peptidylarginine deiminase Pad4, catalytic C-termi | 100.0 | |
| d2gx8a1 | 370 | Nif3-related protein BC4286 {Bacillus cereus [TaxI | 100.0 | |
| d2hgsa4 | 370 | Eukaryotic glutathione synthetase ATP-binding doma | 100.0 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 100.0 | |
| d3psga_ | 370 | Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} | 100.0 | |
| d1rh9a1 | 370 | Beta-mannanase {Tomato (Lycopersicon esculentum) [ | 100.0 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 100.0 | |
| d2iw1a1 | 370 | Lipopolysaccharide core biosynthesis protein RfaG | 100.0 | |
| d1iq0a2 | 370 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 100.0 | |
| d1itua_ | 369 | Renal dipeptidase {Human (Homo sapiens) [TaxId: 96 | 100.0 | |
| d1rwha1 | 369 | Chondroitinase AC {Arthrobacter aurescens [TaxId: | 100.0 | |
| d2heka1 | 369 | Hypothetical protein aq_1910 {Aquifex aeolicus [Ta | 100.0 | |
| d2ewoa1 | 369 | Agmatine iminohydrolase {Streptococcus mutans [Tax | 100.0 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 100.0 | |
| g1as4.1 | 369 | Antichymotrypsin, alpha-1 {Human (Homo sapiens) [T | 100.0 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 100.0 | |
| d1laxa_ | 369 | D-maltodextrin-binding protein, MBP {Escherichia c | 100.0 | |
| d1e7ua4 | 369 | Phoshoinositide 3-kinase (PI3K), catalytic domain | 100.0 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 100.0 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d1r8ga_ | 368 | Carboxylate-amine ligase YbdK {Escherichia coli [T | 100.0 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1pyya4 | 368 | Penicillin-binding protein 2x (pbp-2x), transpepti | 100.0 | |
| d1f52a2 | 368 | Glutamine synthetase, C-terminal domain {Salmonell | 100.0 | |
| d1qw9a2 | 367 | Alpha-L-arabinofuranosidase, catalytic domain {Bac | 100.0 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 100.0 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 100.0 | |
| d1o7xa_ | 367 | Citrate synthase {Archaeon Sulfolobus solfataricus | 100.0 | |
| d1ursa_ | 367 | D-maltodextrin-binding protein, MBP {Alicyclobacil | 100.0 | |
| d1b65a_ | 367 | L-aminopeptidase D-Ala-esterase/amidase DmpA {Ochr | 100.0 | |
| d1iuqa_ | 367 | Glycerol-3-phosphate (1)-acyltransferase {Cushaw s | 100.0 | |
| d1ue8a_ | 367 | Cyp119 {Archaeon Sulfolobus tokodaii [TaxId: 11195 | 100.0 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 100.0 | |
| d1moqa_ | 366 | "Isomerase domain" of glucosamine 6-phosphate synt | 100.0 | |
| d1io7a_ | 366 | Cyp119 {Archaeon Sulfolobus solfataricus [TaxId: 2 | 100.0 | |
| d1h6za1 | 366 | Pyruvate phosphate dikinase, C-terminal domain {Tr | 100.0 | |
| d1jq5a_ | 366 | Glycerol dehydrogenase {Bacillus stearothermophilu | 100.0 | |
| d2bvya2 | 366 | Mannanase A, ManA {Cellulomonas fimi [TaxId: 1708] | 100.0 | |
| d1u5ua_ | 366 | Allene oxide synthase-lipoxygenase protein, N-term | 100.0 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 100.0 | |
| d1w85a_ | 365 | Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st | 100.0 | |
| d1fn9a_ | 365 | Outer capsid protein sigma 3 {Reovirus [TaxId: 108 | 100.0 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 100.0 | |
| d1um0a_ | 365 | Chorismate synthase, AroC {Helicobacter pylori [Ta | 100.0 | |
| d2pnwa1 | 365 | Membrane-bound lytic murein transglycosylase A, ML | 100.0 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 100.0 | |
| d3c8ya1 | 365 | Fe-only hydrogenase, catalytic domain {Clostridium | 100.0 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 100.0 | |
| d1u1ha2 | 365 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| d1w0pa3 | 364 | Vibrio cholerae sialidase {Vibrio cholerae [TaxId: | 100.0 | |
| d2jera1 | 364 | Agmatine iminohydrolase {Enterococcus faecalis [Ta | 100.0 | |
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1t64a_ | 364 | Histone deacetylase 8, HDAC8 {Human (Homo sapiens) | 100.0 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 100.0 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 100.0 | |
| d1kbla1 | 364 | Pyruvate phosphate dikinase, C-terminal domain {Cl | 100.0 | |
| d1omwa3 | 364 | G-protein coupled receptor kinase 2 {Cow (Bos taur | 100.0 | |
| d1kq3a_ | 364 | Glycerol dehydrogenase {Thermotoga maritima [TaxId | 100.0 | |
| d1us3a2 | 364 | Xylanase 10c {Cellvibrio japonicus [TaxId: 155077] | 100.0 | |
| d1oc7a_ | 364 | Cellobiohydrolase II (Cel6) {Humicola insolens, Ce | 100.0 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 100.0 | |
| d1m7va_ | 363 | Nitric oxide (NO) synthase oxygenase domain {Bacil | 100.0 | |
| d1zaia1 | 363 | Fructose-1,6-bisphosphate aldolase {Rabbit (Orycto | 100.0 | |
| d1khba1 | 363 | Cytosolic phosphoenolpyruvate carboxykinase (GTP-h | 100.0 | |
| d1zq1a2 | 363 | Glutamyl-tRNA(Gln) amidotransferase subunit D, Gat | 100.0 | |
| d1onha_ | 363 | AMPC beta-Lactamase, class C {Enterobacter cloacae | 100.0 | |
| d1nc5a_ | 363 | Hypothetical protein YteR {Bacillus subtilis [TaxI | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 100.0 | |
| d1cnza_ | 363 | 3-isopropylmalate dehydrogenase, IPMDH {Salmonella | 100.0 | |
| d1kwfa_ | 363 | CelA cellulase {Clostridium thermocellum [TaxId: 1 | 100.0 | |
| d2a1ha1 | 363 | Branched-chain aminoacid aminotransferase {Human ( | 100.0 | |
| d1umga_ | 362 | ST0318 {Archaeon Sulfolobus tokodaii [TaxId: 11195 | 100.0 | |
| d1gqea_ | 362 | Polypeptide chain release factor 2 (RF2) {Escheric | 100.0 | |
| d1umda_ | 362 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 100.0 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 100.0 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 100.0 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d2drwa1 | 362 | D-Amino acid amidase DaaA {Ochrobactrum anthropi [ | 100.0 | |
| d3thia_ | 362 | Thiaminase I {Paenibacillus thiaminolyticus [TaxId | 100.0 | |
| d1vlca_ | 362 | 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga | 100.0 | |
| d1nqka_ | 362 | Alkanesulfonate monooxygenase SsuD {Escherichia co | 100.0 | |
| d2gjxa1 | 362 | beta-hexosaminidase A {Human (Homo sapiens) [TaxId | 100.0 | |
| d1q8ya_ | 362 | Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1qjwa_ | 362 | Cellobiohydrolase II (Cel6) {Trichoderma reesei, C | 100.0 | |
| d2ozla1 | 361 | E1-beta subunit of pyruvate dehydrogenase (PP modu | 100.0 | |
| d1dhsa_ | 361 | Deoxyhypusine synthase, DHS {Human (Homo sapiens) | 100.0 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 100.0 | |
| d1x1ia1 | 361 | Xanthan lyase {Bacillus sp. gl1 [TaxId: 84635]} | 100.0 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 100.0 | |
| d1lt7a_ | 361 | Betaine-homocysteine S-methyltransferase {Human (H | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1mxga2 | 361 | Bacterial alpha-amylase {Archaeon Pyrococcus woese | 100.0 | |
| d1pe9a_ | 361 | Pectate lyase {Erwinia chrysanthemi, type A [TaxId | 100.0 | |
| d1rqga2 | 361 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1qo5a_ | 360 | Fructose-1,6-bisphosphate aldolase {Human (Homo sa | 100.0 | |
| d1sq1a_ | 360 | Chorismate synthase, AroC {Campylobacter jejuni [T | 100.0 | |
| d1jdwa_ | 360 | L-arginine: glycine amidinotransferase {Human (Hom | 100.0 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 100.0 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 100.0 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 100.0 | |
| d1xfia_ | 360 | Hypothetical protein At2g17340 {Thale cress (Arabi | 100.0 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 100.0 | |
| d1oxwa_ | 360 | Patatin {Heartleaf nightshade (Solanum cardiophyll | 100.0 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 100.0 | |
| d4bcla_ | 359 | Bacteriochlorophyll A protein {Prosthecochloris ae | 100.0 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 100.0 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 100.0 | |
| d1o2da_ | 359 | Alcohol dehydrogenase TM0920 {Thermotoga maritima | 100.0 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 100.0 | |
| d1yvra1 | 359 | 60-kda SS-aARo ribonucleoprotein {African clawed f | 100.0 | |
| d1x74a1 | 359 | 2-methylacyl-CoA racemase Mcr {Mycobacterium tuber | 100.0 | |
| d2hrca1 | 359 | Ferrochelatase {Human (Homo sapiens) [TaxId: 9606] | 100.0 | |
| d1qcxa_ | 359 | Pectin lyase {Aspergillus niger, type B [TaxId: 50 | 100.0 | |
| d1idka_ | 359 | Pectin lyase {Aspergillus niger, type A [TaxId: 50 | 100.0 | |
| d2hdsa1 | 358 | AMPC beta-Lactamase, class C {Escherichia coli, ce | 100.0 | |
| g1lq8.1 | 358 | Protein C inhibitor {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 100.0 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 100.0 | |
| d1ecea_ | 358 | Endocellulase E1 {Acidothermus cellulolyticus [Tax | 100.0 | |
| d1dosa_ | 358 | Fructose-bisphosphate aldolase (FBP aldolase) {Esc | 100.0 | |
| d1m7ja3 | 358 | N-acyl-D-aminoacid amidohydrolase, catalytic domai | 100.0 | |
| d1edqa2 | 358 | Chitinase A, catalytic domain {Serratia marcescens | 100.0 | |
| d2qapa1 | 357 | Fructose-1,6-bisphosphate aldolase {Trypanosome (L | 100.0 | |
| d1taza_ | 357 | Catalytic domain of cyclic nucleotide phosphodiest | 100.0 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 100.0 | |
| d1a05a_ | 357 | 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 100.0 | |
| d1yyda1 | 357 | Fungal peroxidase (ligninase) {Basidomycetos fungu | 100.0 | |
| d1gcya2 | 357 | G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase | 100.0 | |
| d1mppa_ | 357 | Pepsin {Mucor pusillus [TaxId: 4840]} | 100.0 | |
| d1g01a_ | 357 | Alkaline cellulase K catalytic domain {Bacillus sp | 100.0 | |
| d2amxa1 | 357 | Adenosine deaminase (ADA) {Plasmodium yoelii [TaxI | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d16vpa_ | 356 | Conserved core of transcriptional regulatory prote | 100.0 | |
| d1r3sa_ | 356 | Uroporphyrinogen decarboxylase, UROD {Human (Homo | 100.0 | |
| d1lbqa_ | 356 | Ferrochelatase {Baker's yeast (Saccharomyces cerev | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1v53a1 | 356 | 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c | 100.0 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 100.0 | |
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1jaka1 | 356 | beta-N-acetylhexosaminidase {Streptomyces plicatus | 100.0 | |
| d2ebsa2 | 356 | Oligoxyloglucan reducing end-specific cellobiohydr | 100.0 | |
| d1vbga1 | 356 | Pyruvate phosphate dikinase, C-terminal domain {Ma | 100.0 | |
| d1w8oa3 | 356 | Micromonospora sialidase, N-terminal domain {Micro | 100.0 | |
| d1goia2 | 356 | Chitinase B, catalytic domain {Serratia marcescens | 100.0 | |
| d3bu7a1 | 355 | Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [ | 100.0 | |
| d1luca_ | 355 | Bacterial luciferase alpha chain, LuxA {Vibrio har | 100.0 | |
| d1fuia2 | 355 | L-fucose isomerase, N-terminal and second domains | 100.0 | |
| d2b1pa1 | 355 | c-jun N-terminal kinase (jnk3s) {Human (Homo sapie | 100.0 | |
| d1jbqa_ | 355 | Cystathionine beta-synthase {Human (Homo sapiens) | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| g1mtp.1 | 355 | Thermopin {Thermobifida fusca [TaxId: 2021]} | 100.0 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 100.0 | |
| d1iq8a1 | 355 | Archaeosine tRNA-guanine transglycosylase, N-termi | 100.0 |
| >d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=0 Score=31714.41 Aligned_cols=1 Identities=0% Similarity=0.470 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~w~~~~~~~~~~~~~viYe~~~~~f~~~Gd~~g~~~~ldyl~~LGv~~i~L~Pv~~~~~~~~~GY~~~d~~~vdp~~G 80 (420)
T d2bhua3 1 TFDWTDADWHGIKLADCVFYEVHVGTFTPEGTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYG 80 (420)
T ss_dssp SSCCCCTTCCCCCGGGCCEEEECHHHHSSSCSHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGC
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 96899989798884224899996002188999999998679999769998995998768888998888566888685659
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~d~~~lv~~aH~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~dlN~~np~v~~~~~~~~~~Wl~~~GVD 160 (420)
T d2bhua3 81 RPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGNYLSSYAPSYFTDRFSSAWGMGLDYAEPHMRRYVTGNARMWLRDYHFD 160 (420)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCHHHHCGGGEEEEEECSSSEEECTTSHHHHHHHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEECCCCC
T ss_conf 99999999999974054534465535667777633334443334554322345545368699999988764032014653
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 GfR~D~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (420)
T d2bhua3 161 GLRLDATPYMTDDSETHILTELAQEIHELGGTHLLLAEDHRNLPDLVTVNHLDGIWTDDFHHETRVTLTGEQEGYYAGYR 240 (420)
T ss_dssp EEEETTGGGCCCCSSSCHHHHHHHHHHTTCSCCEEEEECSSCCTHHHHTTCCSEEECTHHHHHHHHHHHCCCSGGGGGCC
T ss_pred EEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
T ss_conf 78873333202122310079998888764687425620357753121001125422323210444301334445312330
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~nHD~~~~~~~~~r~~~~~~~~~~~~k~a~~~ll 320 (420)
T d2bhua3 241 GGAEALAYTIRRGWRYEGQFWAVKGEEHERGHPSDALEAPNFVYCIQNHDQIGNRPLGERLHQSDGVTLHEYRGAAALLL 320 (420)
T ss_dssp CSHHHHHHHHHHSSSCEEEEECCTTCCEEEECCCTTCCGGGEEEESCCHHHHHTSTTCCCGGGSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHCHHHHHCCCCCCCCHHHEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 26678999985144446520443153554126433455213034321566323553112356643565999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 t~pG~P~iy~GdEig~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 400 (420)
T d2bhua3 321 TLPMTPLLFQGQEWAASTPFQFFSDHAGELGQAVSEGRKKEFGGFSGFSGEDVPDPQAEQTFLNSKLNWAEREGGEHART 400 (420)
T ss_dssp HSSSEEEEETTGGGTCSSCCCCCCCCCHHHHHHHHHHHHHHC---------CCCCTTSHHHHHTTSCCSGGGGSHHHHHH
T ss_pred HCCCCCEEECCHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHH
T ss_conf 48998798577511789986323456402203544466311367776665557886555544456678788623476899
Q ss_pred -------------------E
Q ss_conf -------------------8
Q 001511 467 -------------------K 467 (1064)
Q Consensus 467 -------------------~ 467 (1064)
.
T Consensus 401 ~~~yr~Li~lRk~~p~l~~~ 420 (420)
T d2bhua3 401 LRLYRDLLRLRREDPVLHNR 420 (420)
T ss_dssp HHHHHHHHHHHHHCTTTTCC
T ss_pred HHHHHHHHHHHHCCHHHHCC
T ss_conf 99999999999568987575
|
| >d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: EPT/RTPC-like family: Enolpyruvate transferase, EPT domain: UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) species: Enterobacter cloacae [TaxId: 550]
Probab=100.00 E-value=0 Score=31644.80 Aligned_cols=1 Identities=0% Similarity=1.334 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 M~~~~i~g~~~L~G~V~ipgsKS~s~Rali~aaLa~g~s~I~n~l~s~D~~~~~~al~~LG~~I~~~~~~~I~~~~~~~~ 80 (419)
T d1ejda_ 1 MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERDGSVWIDASNVNNF 80 (419)
T ss_dssp CEEEEEEECCCCEEEEECCBCHHHHHHHHHHGGGBSSCEEEESCCCCHHHHHHHHHHHHTTCEEEESSSEEEECTTCCCC
T ss_pred CCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEECCEEEEECCCCCCC
T ss_conf 98699948890477997888389999999999984998999259901999999999997799899898799989997777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~t~~~~~~~~a~~~~~~~~l~Gd~sL~~RPm~~li~~L~~lGa~i~~~~g~~~~~i~g~l~g~~~~~~~ 160 (419)
T d1ejda_ 81 SAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVNGRLKGAHIVMDK 160 (419)
T ss_dssp EECHHHHTTCGGGGGGHHHHHHHHSEEEEECCCCSCCSSCTTHHHHHHHHHTTCEEEEETTEEEEECSSSCBCCEEECSS
T ss_pred CCCHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCEEEECCCCCCCCEEECCC
T ss_conf 66554540354320024425665277524666643457774267889998536169962892445337886674674587
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~Ssq~~s~llla~~~~~g~~~i~~~~~~~~i~~t~~~l~~~G~~i~~~~~~~~~i~g~~~~~~~~~~V~~D~ssAa~~~~ 240 (419)
T d1ejda_ 161 VSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLV 240 (419)
T ss_dssp CCHHHHHHHHHHHTTSBSEEEEETCCCCHHHHHHHHHHHHTTCEEECTTSSEEEEECCSCBCCEEEECCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCEEEECCCCEEEEECCCCCCCCCCEEECCHHHHHHHHHH
T ss_conf 62567788984455237963542024441566677776522010011795499980542346774053570664311333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 aa~i~g~~i~i~~~~~~~~~~~~~~l~~mg~~i~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 320 (419)
T d1ejda_ 241 AAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGT 320 (419)
T ss_dssp HHHTTTCEEEEESCCGGGCHHHHHHHHHTTCEEEECSSEEEEECTTCCCBCCCEECCSTTSCCGGGHHHHHHHHHTSBSE
T ss_pred HHCCCCCEEECCCCCHHHHHHHHHHHHHHCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEECCC
T ss_conf 22156865521677806778898876642313997377699997676544300256632234421145541222187361
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~ke~dr~~~~~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~DHRiAMa~aia~l~~~g~~~I~~~~~i~~SyP 400 (419)
T d1ejda_ 321 GVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYE 400 (419)
T ss_dssp EEEECCSCSSCCTHHHHHHHTTCEEEEETTEEEEECCSCCBCCEECCSSHHHHHHHHHHHHHSBEEEEECCTHHHHHHSS
T ss_pred EEEEEECCCHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEECCCEEEECCCH
T ss_conf 67764023438789999996889799969999997999863761613838999999999981999499836137868734
Q ss_pred ------------------E
Q ss_conf ------------------8
Q 001511 467 ------------------K 467 (1064)
Q Consensus 467 ------------------~ 467 (1064)
+
T Consensus 401 ~F~~~l~~LGa~I~~~~~~ 419 (419)
T d1ejda_ 401 RIEDKLRALGANIERVKGE 419 (419)
T ss_dssp SHHHHHHTTTCEEEEEECC
T ss_pred HHHHHHHHCCCEEEEECCC
T ss_conf 0999999679899997179
|
| >d2df7a1 b.121.4.9 (A:11-429) Birnavirus VP2 {Infectious bursal disease virus [TaxId: 10995]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: Positive stranded ssRNA viruses family: Birnaviridae-like VP domain: Birnavirus VP2 species: Infectious bursal disease virus [TaxId: 10995]
Probab=100.00 E-value=0 Score=31650.60 Aligned_cols=1 Identities=0% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~ylksll~PetgpasIPDD~~~rH~l~~etstyNL~~~~sGsGllv~fp~~P~s~vGaHY~~~~~~~l~FDq~l~TsQ 80 (419)
T d2df7a1 1 IVPFIRSLLMPTTGPASIPDDTLEKHTLRSETSTYNLTVGDTGSGLIVFFPGFPGSIVGAHYTLQSNGNYKFDQMLLTAQ 80 (419)
T ss_dssp CCHHHHHHHCGGGCCCCCCSSCCCCBEEEEEEEEEEEECCTTSCEEEEECTTCSSSEEEEEEEECTTSCEEEEEEEECSS
T ss_pred CCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEHHHHHHHH
T ss_conf 91465554285678878971788877542033045369726885699991799875210278972788576465556667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 dLkk~~nYgRliSr~~~i~SstLPaGvYAlnGT~Na~tf~GslSEv~~~sYn~lmS~ttN~~DKv~NvLV~~GVtVLsLP 160 (419)
T d2df7a1 81 NLPASYNYCRLVSRSLTVRSSTLPGGVYALNGTINAVTFQGSLSELTDVSYNGLMSATANINDKIGNVLVGEGVTVLSLP 160 (419)
T ss_dssp CGGGTEEEEEEEEEEEEEEECCCCTTCCBCCCEEEEEEESSCGGGCSCCSTTGGGGSCSCGGGEEEEEETTTCEEEECCC
T ss_pred HHHHHHCHHHHHCEEEEEEECCCCCEEEEECCEEEEEEEECCHHHHHCCCHHHHEECCCCHHHHHCCEEECCCEEEEECC
T ss_conf 66766333321002466651357743455246154589824667600246101002126802530789823864999757
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 TgfD~pYVRLgDetP~~gl~p~~~a~ct~a~~PR~Y~I~~a~~yq~~sq~q~gGtt~Tlfs~NiDavtSlsVtGdivFq~ 240 (419)
T d2df7a1 161 TSYDLGYVRLGDPIPAIGLDPKMVATCDSSDRPRVYTITAADDYQFSSQYQSGGVTITLFSANIDAITSLSIGGELVFHT 240 (419)
T ss_dssp SCSSCCCEECCEECCCCCSCTTCCCEECCCSSCEEEEEEEEEEEEEEEECCTTCEEEEEEEEEEEESSCEEEEEEEEEEC
T ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEE
T ss_conf 66788735647888765778765430365568733575367545547755678688898750001104267400699972
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~dati~~IG~DGt~vi~~avas~nGlt~G~dn~~pfnlviPT~eITqPITsIKLeivt~k~gg~ag~~~s~~~~ 320 (419)
T d2df7a1 241 SVHGLALDATIYLIGFDGTTVITRAVASDNGLTTGIDNLMPFNLVIPTNEITQPITSIKLEIVTSKSGGQAGDQMSWSAS 320 (419)
T ss_dssp SSSSEEEEEEEEEEETTSCEEEEEEEEEEEECCTTSCEEEEEEEEECGGGCCSCEEEEEEEEEEEETTCCTTCEEEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCC
T ss_conf 36651873799996326974788899706765356355443103236776775512789999952136754753222456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 gs~svT~~gGN~PGvLRPvTlVAYE~vapgsilTVaGVSNyELIPNPeL~KN~~t~yG~~dP~~l~y~K~iLs~Re~L~i 400 (419)
T d2df7a1 321 GSLAVTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLVTEYGRFDPGAMNYTKLILSERERLGI 400 (419)
T ss_dssp EEEEEEETTTTSTTSSCCEEEEEEESCCTTCEEEEEEEEEEEEEECHHHHTTCCCBCCCCCTTHHHHHHHHHHTHHHHTC
T ss_pred CCEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCEECCCHHHHHCCCCCCCCCCHHHCCHHHHHHCCHHHCCC
T ss_conf 64699965887778768658999840257746999602451324897897406332356583434288777434311486
Q ss_pred ------------------E
Q ss_conf ------------------8
Q 001511 467 ------------------K 467 (1064)
Q Consensus 467 ------------------~ 467 (1064)
-
T Consensus 401 rtvw~~~~Y~~~~~~f~e~ 419 (419)
T d2df7a1 401 KTVWPTREYTDFREYFMEV 419 (419)
T ss_dssp CSEEEHHHHHHHHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHCC
T ss_conf 3660277878999887439
|
| >d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Nitric oxide (NO) synthase oxygenase domain superfamily: Nitric oxide (NO) synthase oxygenase domain family: Nitric oxide (NO) synthase oxygenase domain domain: Nitric oxide (NO) synthase oxygenase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=0 Score=31574.70 Aligned_cols=1 Identities=0% Similarity=-1.887 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~kn~~~~~~~~dtlh~~~~~~~~C~~~~C~gs~m~p~~~~~~p~~~~~~e~ll~~A~~Fi~qyy~e~~~~~~~~~~ 80 (418)
T d1om4a_ 1 RFLKVKNWETDVVLTDTLHLKSTLETGCTEHICMGSIMLPSQHTRKPEDVRTKDQLFPLAKEFLDQYYSSIKRFGSKAHM 80 (418)
T ss_dssp CCEEEEBTTTCCEEEECGGGGCCSCCSCCSSCBCTTCSCC-----------CHHHHHHHHHHHHHHHHHHTTCTTSHHHH
T ss_pred CCEEEEECCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 95245540478756320434167889987564366222453457888889987899999999999999863435868999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~Rl~ev~~eI~~tGtY~~T~~EL~~GAk~AWRNs~RCIGRi~W~~L~V~D~R~v~t~~~mfeal~~Hi~~ATN~G~Ir~~ 160 (418)
T d1om4a_ 81 DRLEEVNKEIESTSTYQLKDTELIYGAKHAWRNASRCVGRIQWSKLQVFDARDCTTAHGMFNYICNHVKYATNKGNLRSA 160 (418)
T ss_dssp HHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHTCTTCTTGGGTTCCEEEECTTCCSHHHHHHHHHHHHHHHHGGGSCCCE
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 99999999997455620899999887899870454233500116571565678999899999999999997079987623
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ITVFpp~~~~~~~~RIwN~QLIrYAGY~~~dGsiiGDPa~vefT~~c~~lGW~~~~t~FDvLPLviq~~g~~p~~feiP~ 240 (418)
T d1om4a_ 161 ITIFPQRTDGKHDFRVWNSQLIRYAGYKQPDGSTLGDPANVQFTEICIQQGWKAPRGRFDVLPLLLQANGNDPELFQIPP 240 (418)
T ss_dssp EEECCCCSSSSSCCEECSSBSSCBCEEECTTSCEEECGGGHHHHHHHHTTTCCCCCCTTCBCCEEEECTTCCCEEECCCG
T ss_pred EEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEECCH
T ss_conf 89737988899986565488886626568998764783137999999976898999987702089997899972574887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 elvlEV~i~HP~~~wf~~LgLkWyavPaiSnM~L~iGGi~y~aaPFNGWYM~TEIgaRNl~D~~RYN~L~~VA~~mGLDT 320 (418)
T d1om4a_ 241 ELVLEVPIRHPKFDWFKDLGLKWYGLPAVSNMLLEIGGLEFSACPFSGWYMGTEIGVRDYCDNSRYNILEEVAKKMDLDM 320 (418)
T ss_dssp GGCCEEECCCSSCTTGGGGCCEEESCCCBCSCEEEETTEEESCCCEECCCBHHHHHTHHHHCTTTTCCHHHHHHHHTCCC
T ss_pred HHEEEECCCCCCCHHHHHCCCCEEECCHHCCCEEEECCEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 78246435598975477559837625011365232088855346745341123365415667565664899999849788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~sLWkDrAlvElN~AVLhSF~~~gVtIvDHHtas~~F~~~~~~E~~~~r~~pgdW~WlvPP~Sgs~tpvfH~~~~n~ 400 (418)
T d1om4a_ 321 RKTSSLWKDQALVEINIAVLYSFQSDKVTIVDHHSATESFIKHMENEYRCRGGCPADWVWIVPPMSGSITPVFHQEMLNY 400 (418)
T ss_dssp SCGGGCHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHSCCCCCHHHHSCSSSGGGSGGGGBCCCBC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHCC
T ss_conf 99740577889999999999899887964805278999999999999981899998852777888653441677765353
Q ss_pred -----------------E
Q ss_conf -----------------8
Q 001511 467 -----------------K 467 (1064)
Q Consensus 467 -----------------~ 467 (1064)
=
T Consensus 401 ~l~P~f~yq~~~w~th~w 418 (418)
T d1om4a_ 401 RLTPSFEYQPDPWNTHVW 418 (418)
T ss_dssp CCSSEEECCCCGGGTCCC
T ss_pred CCCCCCCCCCCCCCCCCC
T ss_conf 147886557986446789
|
| >d2gp4a2 d.334.1.1 (A:1-418) 6-phosphogluconate dehydratase EDD {Shewanella oneidensis [TaxId: 70863]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IlvD/EDD N-terminal domain-like superfamily: IlvD/EDD N-terminal domain-like family: lvD/EDD N-terminal domain-like domain: 6-phosphogluconate dehydratase EDD species: Shewanella oneidensis [TaxId: 70863]
Probab=100.00 E-value=0 Score=31568.63 Aligned_cols=1 Identities=0% Similarity=0.570 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~i~~vt~rI~~RS~~~r~~Yl~~i~~~~~~~~~r~~l~c~nlAh~~aa~~~~dk~~l~d~~kP~IGIvns~~d~~pc 80 (418)
T d2gp4a2 1 MHSVVQSVTDRIIARSKASREAYLAALNDARNHGVHRSSLSCGNLAHGFAACNPDDKNALRQLTKANIGIITAFNDMLSA 80 (418)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 97179999999999708779999999999875488711135521777887068302556763179969998352346464
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 h~hl~~l~~~vK~gv~~~gg~~~~~~~~p~~cDGit~G~~GM~~SL~SRelIA~siE~~~~~~~~Dg~V~l~~CDK~vPG 160 (418)
T d2gp4a2 81 HQPYETYPDLLKKACQEVGSVAQVAGGVPAMCDGVTQGQPGMELSLLSREVIAMATAVGLSHNMFDGALLLGICDKIVPG 160 (418)
T ss_dssp ---------CCC---CCCCEEEEECC-BC--CCCCCCSSSGGGGHHHHHHHHHHHHHHHHTTCCCSEEEEECCSTTTTHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHH
T ss_conf 24299999999999997178663567645534651378653013130022789899998624765617997338998768
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~lMaa~r~n~lPsI~v~gGpm~~G~~~~~~~~~~~~~~~G~i~~~el~~~E~~a~p~~GtC~~mgTANTm~~l~EalGl~ 240 (418)
T d2gp4a2 161 LLIGALSFGHLPMLFVPAGPMKSGIPNKEKARIRQQFAQGKVDRAQLLEAEAQSYHSAGTCTFYGTANSNQLMLEVMGLQ 240 (418)
T ss_dssp HHHHHHTTTTSCEEECCCCC-------------------CCTHHHHHHHTTSSCHHHHHHHHHCC-----CHHHHHTTCS
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999843678779971577689746777725753032233569999999874668878663267798999999971567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 LPGsa~vpa~~~~r~~~a~~ag~~~~~~~~~~~~~~~~~dIlt~~a~~NAi~~~~A~GGSTNavlHL~AIA~eaGi~l~l 320 (418)
T d2gp4a2 241 LPGSSFVNPDDPLREALNKMAAKQVCRLTELGTQYSPIGEVVNEKSIVNGIVALLATGGSTNLTMHIVAAARAAGIIVNW 320 (418)
T ss_dssp CTTGGGSCTTCHHHHHHHHHHHHHHHHTSTTSSSCCCHHHHSSHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHTTCCCCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHCCCCCCH
T ss_conf 52124788861899999998999999999851267897786199999711168760562675320629999654898989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~dfd~is~~~P~L~~l~P~G~~~m~d~~~AGGvp~v~k~L~~~glLh~D~~TVtG~tl~e~l~~~~~~~~~i~~~~~p~~ 400 (418)
T d2gp4a2 321 DDFSELSDAVPLLARVYPNGHADINHFHAAGGMAFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGELRWVDGPTV 400 (418)
T ss_dssp HHHHHHHTTCCBCBCCGGGSSCCHHHHHHHTHHHHHHHHHHHHTCSCCCCEETTEECGGGGGEEEEEETTEEEEEECCSS
T ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEECCCCCC
T ss_conf 99999857888544441598621889876069999999998788856999883886799997077766774000468777
Q ss_pred -----------------E
Q ss_conf -----------------8
Q 001511 467 -----------------K 467 (1064)
Q Consensus 467 -----------------~ 467 (1064)
-
T Consensus 401 ~~d~~VIrp~~~P~~~~G 418 (418)
T d2gp4a2 401 SLDTEVLTSVATPFQNNG 418 (418)
T ss_dssp CSCTTTBCCSSSCSBSSC
T ss_pred CCCCCEECCCCCCCCCCC
T ss_conf 899887576555779999
|
| >d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=31565.65 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~~~w~~~pRw~~i~r~yta~dv~~lrgs~~~~~~~a~~~a~~Lr~lL~~~~~v~~~Ga~d~~~A~~~ 80 (418)
T d1f61a_ 1 ASVVGTPKSAEQIQQEWDTNPRWKDVTRTYSAEDVVALQGSVVEEHTLARRGAEVLWEQLHDLEWVNALGALTGNMAVQQ 80 (418)
T ss_dssp CCCTTCCCCHHHHHHHHHHCGGGTTCCCSSCHHHHHHTSTTCCCCCHHHHHHHHHHHHHHHHSSCEEEEBCCSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHH
T ss_conf 98456504599999998629882778799899999986688775425789999999999836997884144778999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~kaGf~aiY~SG~~vaa~~s~s~~g~PD~gl~~~~ev~~~v~~I~~~~~~~d~~~~~~~~~~~~~~~~PIIaDaDtGfG~ 160 (418)
T d1f61a_ 81 VRAGLKAIYLSGWQVAGDANLSGHTYPDQSLYPANSVPQVVRRINNALQRADQIAKIEGDTSVENWLAPIVADGEAGFGG 160 (418)
T ss_dssp HHTTCSCEEECHHHHHHHCCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSCSCSSCCEEEECTTCSSS
T ss_pred HHHCCCEEEECHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC
T ss_conf 98199889854276523454556886665555167899999999988788999998740466433567768753333453
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~nv~rtvk~~i~AGaAgihiEDQ~~~~KkCGH~~GK~lvp~~e~~~ki~Aa~~a~d~~~~~~~iiARTDA~~a~~i~s~ 240 (418)
T d1f61a_ 161 ALNVYELQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRTLTSARLAADVADVPTVVIARTDAEAATLITSD 240 (418)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCEECCHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTTCCEESCS
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHCCCCCC
T ss_conf 78999999999983786899734677776556667766688999999999998766437998489997160232355333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~d~~D~~~i~g~rt~eG~y~~~~g~e~AI~Ra~aya~~gd~i~~e~~~~~~ee~~~f~~~v~~~~~~~~l~~~~sPsf~w 320 (418)
T d1f61a_ 241 VDERDQPFITGERTREGFYRTKNGIEPCIARAKAYAPFADLIWMETGTPDLEAARQFSEAVKAEYPDQMLAYNCSPSFNW 320 (418)
T ss_dssp CSTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHGGGCSEEEECCSSCCHHHHHHHHHHHHTTCTTCEEEEECCSSSCH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCC
T ss_conf 43233444455457664001457789999999963543671885057899999999986248873332035676567770
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~~~~~~~eL~~~Gy~~~~i~la~~~a~~~a~~~la~~~~~~Gm~ay~elQ~re~~~~~~Gy~~~khQ~~vG~~ 400 (418)
T d1f61a_ 321 KKHLDDATIAKFQKELAAMGFKFQFITLAGFHALNYSMFDLAYGYAQNQMSAYVELQEREFAAEERGYTATKHQREVGAG 400 (418)
T ss_dssp HHHSCHHHHHHHHHHHHHHTEEEEEETTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCCTTSHHHHTTHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHCCC
T ss_conf 11467766543399999609629996138999999999999999986676277877658888874698556401330532
Q ss_pred -----------------E
Q ss_conf -----------------8
Q 001511 467 -----------------K 467 (1064)
Q Consensus 467 -----------------~ 467 (1064)
-
T Consensus 401 y~D~~~~~~~~~~s~~a~ 418 (418)
T d1f61a_ 401 YFDRIATTVDPNSSTTAL 418 (418)
T ss_dssp HHHHHHHHHCTTSCCCCC
T ss_pred HHHHHHHHHCCCHHHHCC
T ss_conf 788889884787053139
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=0 Score=31562.89 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~ 80 (418)
T d2r5ea1 1 KFDLPKRYQGSTKSVWVEYIQLAAQYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYS 80 (418)
T ss_dssp CCCCCGGGTTCCCCHHHHHHHHHHHHCCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98643464179988999999986589988716889999889999999999983899667678998788999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~ 160 (418)
T d2r5ea1 81 QLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLD 160 (418)
T ss_dssp HHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECC
T ss_pred HHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 98599999641589917973321100222013333200122345004678987498699997214556663055666665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~ 240 (418)
T d2r5ea1 161 NNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIG 240 (418)
T ss_dssp HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEE
T ss_pred HHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 88776654114441241786865443331888777753442178122102102120157876531003655543145665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 S~SK~~~~pGlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 320 (418)
T d2r5ea1 241 SAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASF 320 (418)
T ss_dssp EHHHHTTCGGGCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57754268876445323431133444211222333345620210122233222334453256788888988764667766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~~ 400 (418)
T d2r5ea1 321 LAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKK 400 (418)
T ss_dssp HHHTTCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECCSC
T ss_pred HHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCEEEEEECCC
T ss_conf 76428701379812499787223565111012034467899999999878999968256478877667899899995699
Q ss_pred -----------------E
Q ss_conf -----------------8
Q 001511 467 -----------------K 467 (1064)
Q Consensus 467 -----------------~ 467 (1064)
+
T Consensus 401 ~e~l~~a~~rl~~~lg~~ 418 (418)
T d2r5ea1 401 DENLQKAAEILRKWKGSS 418 (418)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHCCC
T ss_conf 999999999999987359
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=31561.90 Aligned_cols=1 Identities=0% Similarity=-0.127 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~r~~~~~~~~~~~~~~~~~~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~ 80 (418)
T d1w7la_ 1 QLQARRLDGIDYNPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGEL 80 (418)
T ss_dssp CCSCGGGTTCCCCTHHHHHHHHHTSCCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 97670002799899999999747899788889889998899999999999857974468899867899999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d 160 (418)
T d1w7la_ 81 LGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLD 160 (418)
T ss_dssp HTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECC
T ss_pred HCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 58998810115642585799999998622677615304556600689999749874014566542223443224575300
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~ 240 (418)
T d1w7la_ 161 PMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIG 240 (418)
T ss_dssp HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEE
T ss_pred HHHHHCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCEEC
T ss_conf 55430223566531112676776564333889999999998629871155666775158989989777165445552001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 S~SK~~~~pG~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 320 (418)
T d1w7la_ 241 SAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRS 320 (418)
T ss_dssp EHHHHTTCGGGCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 56764268877434322320255553023322322232025677887765222333344332223102333200012345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~ 400 (418)
T d1w7la_ 321 LQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK 400 (418)
T ss_dssp HHTTTCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC
T ss_pred HHHCCCCCCCCCCEEEEEEECCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCEEEEEECC
T ss_conf 66438812379820499887710002320101345553589999999997999997454426787667779979999738
Q ss_pred -----------------E
Q ss_conf -----------------8
Q 001511 467 -----------------K 467 (1064)
Q Consensus 467 -----------------~ 467 (1064)
+
T Consensus 401 ~~~~l~~a~~rl~~~~~~ 418 (418)
T d1w7la_ 401 DEATLQAMDEKLRKWKVE 418 (418)
T ss_dssp CHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHCC
T ss_conf 999999999999998667
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31496.46 Aligned_cols=1 Identities=0% Similarity=0.802 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 m~~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~ 80 (417)
T d1pv7a_ 1 MYYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWII 80 (417)
T ss_dssp CHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 98665715899999999999999999999999999802999999999999999999999999999999817539999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (417)
T d1pv7a_ 81 TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGI 160 (417)
T ss_dssp HHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999999988763014678889999877650122233202211222344113456777788765403554455300012
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (417)
T d1pv7a_ 161 MFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFD 240 (417)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 33456653211003489999999999842332102322002320233222211001222222110246688999887641
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (417)
T d1pv7a_ 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKT 320 (417)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 22222222223333210000011222223322221024444200122210003657888886520113322111457899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 321 LHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998798489999999999999999999999999999997989999999999999999999753
Q ss_pred ----------------E
Q ss_conf ----------------8
Q 001511 467 ----------------K 467 (1064)
Q Consensus 467 ----------------~ 467 (1064)
.
T Consensus 401 ~~~~~~~~~r~~~~e~a 417 (417)
T d1pv7a_ 401 SGPGPLSLLRRQVNEVA 417 (417)
T ss_dssp CCSSCTTHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHCCCC
T ss_conf 27785436675323379
|
| >d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Hypothetical protein YfdW species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31492.91 Aligned_cols=1 Identities=100% Similarity=1.732 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 m~~PL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~ 80 (417)
T d1q7ea_ 1 LSTPLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGK 80 (417)
T ss_dssp CCCTTTTCEEEECCCTTHHHHHHHHHHHTTCEEEEEECTTTCCGGGTTTCSSTTSCCHHHHTTCTTCEEEECCTTSHHHH
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHCCCCCCCCCCCHHHHHHCCCCEEEEEECCCHHHH
T ss_conf 99898999899847704899999999983993999898999871210488898985188897089984999769398899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~Li~~aDv~i~n~~pg~~~rlGl~~~~l~~~nP~lI~~sisgfG~~GP~~~~~~~D~~~qA~sG~~~~~g~~~~~P 160 (417)
T d1q7ea_ 81 EVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSIKGFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPP 160 (417)
T ss_dssp HHHHHHHHHCSEEEECCCC-------CCHHHHHHHCTTCEEEEEESSCTTSTTTTSCCCHHHHHHHTTHHHHSSCTTSCC
T ss_pred HHHHHHHHCCCCCEECCCCCCHHHCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999984086407546887175528889999866878788763222454344565334543333223201126656798
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~D~~~g~~aa~ailaAL~~R~~tG~Gq~VdvSl~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 240 (417)
T d1q7ea_ 161 LVSAAALGDSNTGMHLLIGLLAALLHREKTGRGQRVTMSMQDAVLNLCRVKLRDQQRLDKLGYLEEYPQYPNGTFGDAVP 240 (417)
T ss_dssp CCCSSCTTTHHHHHHHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHTHHHHHHHHHHHHHSCCTTSTTTTTSCCCSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 52224431679999999999999999985499739997789999986689998554320002222244344655677788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 r~~~~~~~~~p~~~~~~~~~~t~dg~i~~~~~~~~~w~~l~~~lg~~dl~~d~~~~~~~~r~~~~~~l~~~i~~~~~~~t 320 (417)
T d1q7ea_ 241 RGGNAGGGGQPGWILKCKGWETDPNAYIYFTIQEQNWENTCKAIGKPEWITDPAYSTAHARQPHIFDIFAEIEKYTVTID 320 (417)
T ss_dssp CCTTCCSSSSCEEEEECTTTTTCTTCEEEEECCGGGHHHHHHHTTCGGGGTCTTTSSHHHHGGGHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 66656888886430133015517983999732312556899985885101332000000122119999877765211333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~e~~~~l~~~~ip~~pV~~~~e~~~dpq~~~r~~~~~~~~p~~g~~~~~g~p~~~s~~~~~~~~aP~lGeht~eIL~el 400 (417)
T d1q7ea_ 321 KHEAVAYLTQFDIPCAPVLSMKEISLDPSLRQSGSVVEVEQPLRGKYLTVGCPMKFSAFTPDIKAAPLLGEHTAAVLQEL 400 (417)
T ss_dssp HHHHHHHHGGGTCCEEECCCHHHHHHCHHHHHTTSEEEEEETTTEEEEEECCSSCCSSCCCCCCCCCCTTTTHHHHHHHT
T ss_pred CCHHEEEEECCCEEEEECCCHHHHHHCHHHHHCCCEEEEECCCCCCEEEECCCEECCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 10110123237702674488999976989897299999666998823644788604899999999999984599999986
Q ss_pred ----------------E
Q ss_conf ----------------8
Q 001511 467 ----------------K 467 (1064)
Q Consensus 467 ----------------~ 467 (1064)
+
T Consensus 401 G~s~~~I~~L~~~gvI~ 417 (417)
T d1q7ea_ 401 GYSDDEIAAMKQNHAIE 417 (417)
T ss_dssp TCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHCCCCC
T ss_conf 99999999999781939
|
| >d3bona1 d.92.1.7 (A:3-419) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Clostridium neurotoxins, catalytic domain
domain: Botulinum neurotoxin
species: Clostridium botulinum, serotype A [TaxId: 1491]
Probab=100.00 E-value=0 Score=31491.26 Aligned_cols=1 Identities=0% Similarity=-0.428 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
|
T Consensus 1 ~~nnnFNyndPVnn~~Ily~~~p~~~~~~~~KAF~I~~nIWIiPER~~~~~~~~~d~~~p~~~~~~~~~yYDpnyLsTD~ 80 (417)
T d3bona1 1 FVNKQFNYKDPVNGVDIAYIKIPNVGQMQPVKAFKIHNKIWVIPERDTFTNPEEGDLNPPPEAKQVPVSYYDSTYLSTDN 80 (417)
T ss_dssp CCSCCCCTTSCCCSSSEEEEECC--CCCCCEEEEEEETTEEEEEEECCSSCTTCCSCSCC----CCSSCCCCTTTTCSHH
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCEEECCCCCCCCCCCCCCCCCCHHHCCCCCCEECCCCCCCCH
T ss_conf 96677777898899718999567788776034477426768830343567888666689701025876412753245613
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 EKD~FLk~~IKLf~RINsn~~G~~LL~~I~~aiPflG~s~~~~~~~~~~~~svni~~~~g~~~~~~~NlvIfGPgpnI~e 160 (417)
T d3bona1 81 EKDNYLKGVTKLFERIYSTDLGRMLLTSIVRGIPFWGGSTIDTELKVIDTNCINVIQPDGSYRSEELNLVIIGPSADIIQ 160 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHCCCCCBCCSSTTEEBCCGGGEEEEECTTSCEEEEECSEEEEECCSSTTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCEEEECCCCCCCC
T ss_conf 78899999999999854857899999999726877789988711256641157764489854554215899889863145
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 n~~~~~~~~~~n~s~~GfGsi~~i~FsPe~~~~f~~~~~~~~~~~~~~~~F~~DPAl~L~heLIhsLh~LYGik~~~~~~ 240 (417)
T d3bona1 161 FECKSFGHEVLNLTRNGYGSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKFATDPAVTLAHELIHAGHRLYGIAINPNRV 240 (417)
T ss_dssp CEEECCCCSSCCTTTSSCCCCEEEECCTTEEEEECSSHHHHTCTTSCCCCEECCHHHHHHHHHHHHHHHHTTCCCCTTCE
T ss_pred CCCEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 54323034457733047650589997764377604533455555545343542889999999999988760756788741
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~i~~eEl~tFGG~D~~iI~~~~~~~~~~k~l~~yk~Ia~rl~kvn~~~~~~~~l~~yK~~F~~KY~ 320 (417)
T d3bona1 241 FKVNTNAYYEMSGLEVSFEELRTFGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKAKSIVGTTASLQYMKNVFKEKYL 320 (417)
T ss_dssp EECCSCHHHHHTTCEEEHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHCCEESSSSSCHHHHHHHHHHHHT
T ss_pred EECCCCCHHHHCCCCCCHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 32121122343246645777765169781105846788899999999999999987525678885236999999988744
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 l~~d~~g~~~vn~~kF~~~yk~L~~~fTe~~~a~~fkvk~Rk~Y~~~~~~~~~~nlldd~iYtI~eGFNi~~~nl~~~~~ 400 (417)
T d3bona1 321 LSEDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNLRNTNLAANFN 400 (417)
T ss_dssp CEECTTCCEECCHHHHHHHHHHHHHTSCHHHHHHHHTCCCCSCSSSCCCEEEECCCSSTTTCBTTTBTSCTTSTTSSTTG
T ss_pred CCCCCCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCCCEECCCCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf 65278885895389999999999711588888766501434420000244100144676531314552146665345557
Q ss_pred ----------------E
Q ss_conf ----------------8
Q 001511 467 ----------------K 467 (1064)
Q Consensus 467 ----------------~ 467 (1064)
-
T Consensus 401 GQN~~iN~~~~~~~~~~ 417 (417)
T d3bona1 401 GQNTEINNMNFTKLKNF 417 (417)
T ss_dssp GGBTTTTGGGCEEEEEC
T ss_pred CCCHHHCHHHHHHHCCC
T ss_conf 76522153442442069
|
| >d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=0 Score=31489.64 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~n~~ti~d~~d~~gK~VllRvD~NvPi~~g~i~dd~RI~~~~pTI~~l~~~~a~kvil~sH~GRP~g~~~~~~SL~ 80 (417)
T d1ltka_ 1 HHHLGNKLSISDLKDIKNKKVLVRVDFNVPIENGIIKDTNRITATLPTINHLKKEGASKIILISHCGRPDGLRNEKYTLK 80 (417)
T ss_dssp CCCSSSCCBSSSCCCCTTCEEEEEECCCCCEETTEESCTHHHHHTHHHHHHHHTTCCSEEEEECCCSCCTTSCCGGGCSH
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHH
T ss_conf 97444675023111258998999943477654993896889999999999999879985999847999999889875879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~a~~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~IlLLENvRF~~eE~~~~~~~~~~~~~~~~~n~~~f~k~LA~laD 160 (417)
T d1ltka_ 81 PVAETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLENLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLAD 160 (417)
T ss_dssp HHHHHHHHHHTSCCEECSCSSSHHHHHHHHSSCTTEEEECCCGGGSHHHHSEEECTTCCEEECCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCEECCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999868465556553202245430247865378740021021012356432221000122307999999860385
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 vyVNDAF~~aHR~haS~vgi~~~~~~aG~L~ekEl~~L~~~l~~~~kP~vaIlGGaKvsdKi~vi~~L~~k~D~iiigG~ 240 (417)
T d1ltka_ 161 VFINDAFGTAHRAHSSMVGVKLNVKASGFLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGG 240 (417)
T ss_dssp EEEEECTTSCSSCCHHHHCCCCSEEEECHHHHHHHHHHHHHHTSCCSSEEEEEECSCSGGGHHHHHHHHTTCSEEEEESS
T ss_pred EEEECCHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCEEEEEHH
T ss_conf 89963531231047632312120112368999999999999854566736998567744269999878865111663036
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 mantfL~~a~g~~ig~sl~e~~~~~~~~~i~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~ 320 (417)
T d1ltka_ 241 MAYTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPK 320 (417)
T ss_dssp HHHHHHHHHHCCCCTTSCCCTTGGGTHHHHHHHHHHTTCEEECCSEEEEESSSSSSSCEEEEETTTCCCTTCEEEEECHH
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCH
T ss_conf 67889886148766753103567899999999998639961002322430234567643312333567753444411511
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 Ti~~~~~~I~~aktI~WNGP~GvfE~~~F~~GT~~l~~~i~~~t~~~~~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~ 400 (417)
T d1ltka_ 321 SIENYKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVVEVTKKGAITIVGGGDTASLVEQQNKKNEISHVSTGGGAS 400 (417)
T ss_dssp HHHHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHTTCEEEECCSTTHHHHHHHTCGGGSSEECCCSHHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHH
T ss_conf 12679998646877999898344446624278999999999883179979995789999999639746880897578999
Q ss_pred ----------------E
Q ss_conf ----------------8
Q 001511 467 ----------------K 467 (1064)
Q Consensus 467 ----------------~ 467 (1064)
.
T Consensus 401 Le~L~G~~LPgieaL~~ 417 (417)
T d1ltka_ 401 LELLEGKELPGVLALSN 417 (417)
T ss_dssp HHHHTTCCCHHHHTSCC
T ss_pred HHHHCCCCCCCEECCCC
T ss_conf 99987999762001249
|
| >d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: Clavaminate synthase-like family: YbiU-like domain: Hypothetical protein YbiU species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=31489.56 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~p~dl~~~i~~~K~~Lr~~~~~~~~~f~~l~~~i~~ev~eI~~l~~~G~~iIPeI~F~dI~~~~~~~~~~~~I 80 (417)
T d2csga1 1 TPFTHETLPADPKAAIRQMKQALRAQIGDVQAVFDRLSATIAARVAEINDLKAQGQPVWPIIPFSELAMGNISDATRAEV 80 (417)
T ss_dssp CTTCCSSCCSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCBCCHHHHHTTCCCHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCCCCCHHHHHHH
T ss_conf 99876678898389999999999965678999999999999999999999996199985065589952678998999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 krrG~vVIRnV~p~e~a~~w~~~l~~Yle~n~~~~~~~~~~d~~f~~lp~~~pqiy~lyws~~q~~aR~~p~~~~~~~~l 160 (417)
T d2csga1 81 KRRGCAVIKGHFPREQALAWDQSMLDYLDKNHFDEVYKGPGDNFFGTLSASRPEIYPVYWSQAQMQARQSEEMALAQSFL 160 (417)
T ss_dssp HHHSEEEETTSSCHHHHHHHHHHHHHHHHHTTHHHHCCCCCCCTTTTSSSCCCSSCCCCCBHHHHHHHHCHHHHHHHHHH
T ss_pred HHCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHCCHHHHHHHHHH
T ss_conf 86188998887899999999999999998286420036864310012355677744242689999874495899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~lw~~~~~~~~~~~~~~~l~y~DR~r~r~Pg~~~~~l~pH~D~Gs~erW~d~~y~~~y~~if~g~we~ydPw~~~~R~~ 240 (417)
T d2csga1 161 NRLWQVEHDGKRWFNPDISIIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQQVFASVFNGNVEQYDPWNAAHRTD 240 (417)
T ss_dssp HTTSBCCSSSSCSSEEEEECCCCCCEECCCTTCCBCCEEEEECSCSTHHHHCHHHHHHTHHHHTSCGGGCCTTBCTTGGG
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 85202368866412577743045503137999876786755689850103563125688887558842279876423320
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~l~~~~~~cs~FR~fQGwlaLs~~~p~dGtL~v~P~~~~~ay~llrpf~~d~~~~~~~g~~pg~~~~~~~~~h~~l~ 320 (417)
T d2csga1 241 VEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEAMAYILLRPLLDDVPEDELCGVAPGRVLPISEQWHPLLM 320 (417)
T ss_dssp CCCCCCTTCCCCCSCCSEEEEEESSCBCTTSSCEEECCCGGGHHHHHHGGGSTTSCTTCCTTCCTTSCEECCTTTCHHHH
T ss_pred CHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 00034478765414778887752366788887379963403577887240125556655677776655545633315650
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~v~ip~~~pGD~V~Wh~d~iH~v~~~~~g~~~s~V~Yi~~~P~~~~N~~yl~~qr~aF~~g~~ppdFp~~~~E~~~~g 400 (417)
T d2csga1 321 AALTSIPPLEAGDSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYARKVKAALETGASPGDFPREDYETTWEG 400 (417)
T ss_dssp TTCEECCCBCTTCEEEEETTCCEEECCBSSCSSCCCEEECCBCEESHHHHHHHHHHHHHHHHTCCCTTSCSCCGGGSCSS
T ss_pred CCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 86155245688887887078753446678999865389842788846559999999999975999877789987543356
Q ss_pred ----------------E
Q ss_conf ----------------8
Q 001511 467 ----------------K 467 (1064)
Q Consensus 467 ----------------~ 467 (1064)
-
T Consensus 401 r~~~~~ls~~G~r~mGL 417 (417)
T d2csga1 401 RFTLRDLNIHGKRALGI 417 (417)
T ss_dssp BCCGGGCCHHHHHHTTC
T ss_pred CCCHHHCCHHHHHHCCC
T ss_conf 88946528999986289
|
| >d1w6ga1 b.30.2.1 (A:212-628) Copper amine oxidase, domain 3 {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Supersandwich superfamily: Amine oxidase catalytic domain family: Amine oxidase catalytic domain domain: Copper amine oxidase, domain 3 species: Arthrobacter globiformis [TaxId: 1665]
Probab=100.00 E-value=0 Score=31492.40 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 P~r~~~kp~~i~QP~G~~f~v~~g~~V~w~~W~f~~~f~~r~Gl~l~dv~~~~g~r~r~i~Y~lsl~E~~vpY~~~~p~~ 80 (417)
T d1w6ga1 1 PLRTTQKPISITQPEGPSFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRLRPIINRASIAEMVVPYGDPSPIR 80 (417)
T ss_dssp SCCCCCCCCCCCCTTCCSCEEETTTEEEETTEEEEEEEETTTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEBCCCCTTT
T ss_pred CCCCCCCCCEEECCCCCCEEECCCCEEEECCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEEECCEEEEEECCCCCCHH
T ss_conf 98888998305689999879778988997687899970787661999999818984766899801236798788998356
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~D~ge~G~G~~a~~L~~G~DCp~~a~y~D~~~~~~~g~p~~~~naiCifE~d~G~~~rh~~~~~~~~~~~r~~~L 160 (417)
T d1w6ga1 81 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGILAKHSDLWSGINYTRRNRRM 160 (417)
T ss_dssp TTCEEECCCCCCGGGGBCCCCBTTTBCSSCEEECCEEECTTSCEEECTTCEEEEEEEEEEEEEEECTTTCCEEEEEEEEE
T ss_pred HHCEEEECCCCCHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEEEEE
T ss_conf 21016733452633412346558999866768237872688998861653788624788227888704781368750069
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 Vvr~i~TvgNYdYi~~~~F~~dGsIe~~v~aTG~l~~~~~~~~~~~~g~~v~~~~~g~~H~H~f~~RlD~dIdG~~Nsv~ 240 (417)
T d1w6ga1 161 VISFFTTIGNYDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNISQLAPGLGAPFHQHIFSARLDMAIDGFTNRVE 240 (417)
T ss_dssp EEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCCEECCTTCCSSEEEEETTEEEECEEEEEEEEEEECTTSSCBEEE
T ss_pred EEEEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCCCCCCCCCEECCCCCCCCCCCEEEEEECCCCCCCCCEEE
T ss_conf 99999973202089999994696799999988999871347888986437646756555321357774355479976699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~E~~a~~~~~~~~~r~~~vvN~~k~N~~G~~~gYkl~p~~~~~~l~~~~s~~~ 320 (417)
T d1w6ga1 241 EEDVVRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIA 320 (417)
T ss_dssp EEEEEECCSBTTBTTSCCEEEEEEEECBGGGCEECCCGGGTCEEEEEEEEEECTTSCEEEEEEEECCCCCCCSCTTSHHH
T ss_pred EEEEEEECCCCCCCCCCEEEEEEEEEEEHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHH
T ss_conf 99617842797665454789999988762563220266686489998799858899944599855887764579876011
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~ra~fa~~~lwVT~y~d~E~~aag~y~nq~~~~~~l~~~~~~~e~I~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~gf~L 400 (417)
T d1w6ga1 321 RRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKL 400 (417)
T ss_dssp HHTGGGGSSEEEEECCTTCCCTTCSCCBTCCSSSSHHHHHTTCCBCTTBCEEEEEEEEEEECCCGGGSSSEEEEEEEEEE
T ss_pred HCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCEEEEEEE
T ss_conf 02322106378856877662677777447789998467510899423786799995784248985447997620577999
Q ss_pred ----------------E
Q ss_conf ----------------8
Q 001511 467 ----------------K 467 (1064)
Q Consensus 467 ----------------~ 467 (1064)
+
T Consensus 401 ~P~nFF~~nPald~p~s 417 (417)
T d1w6ga1 401 RPEGFFDRSPVLDVPAN 417 (417)
T ss_dssp EESSCSSSCTTTTCCCC
T ss_pred ECCCCCCCCCCCCCCCC
T ss_conf 87877899986678999
|
| >d1gff1_ b.121.5.1 (1:) Microvirus capsid proteins {Bacteriophage G4 [TaxId: 10843]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: ssDNA viruses family: Microviridae-like VP domain: Microvirus capsid proteins species: Bacteriophage G4 [TaxId: 10843]
Probab=100.00 E-value=0 Score=31488.92 Aligned_cols=1 Identities=0% Similarity=0.636 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~DlsH~~~~t~~~G~L~PI~~~eVLPGDtf~l~~~~f~Rlat~~~pvmdn~~~d~ffFfVP~RlvW~dnWekF~g~~~ 80 (417)
T d1gff1_ 1 VPHDLSHLVFEAGKIGRLKTISWTPVVAGDSFECDMVGAIRLSPLRRGLAVDSRVDIFSFYIPHRHIYGQQWINFMKDGV 80 (417)
T ss_dssp CEECCCEEEEEEECSSBCEEEEEEEECTTCEEEEEEEEEEEECCBSSSCCSCEEEEEEEEEEESHHHHTHHHHHHHHHGG
T ss_pred CCCCCCCHHHHCCCCCEEEEEEECCCCCCCEEEECHHHHHCCCCCCCHHHHHEEEEEEEEECCEEEEEHHHHHHHHCCCC
T ss_conf 98554500110455650678775142589755644123201266532211210667899852411354125899756878
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 np~~vP~vt~~~g~~~~dYlG~P~~~~~~~~~l~~rAYn~I~NewfRd~nl~ds~~v~~~dgpdd~a~y~lr~~~~~dyf 160 (417)
T d1gff1_ 81 NASPLPPVTCSSGWDSAAYLGTIPSSTLKVPKFLHQGYLNIYNNYFKPPWSDDLTYANPSNMPSEDYKWGVRVANLKSIW 160 (417)
T ss_dssp GCCCCCCEECCSSTTSSGGGSSCCCTTSEECHHHHHHHHHHHHHHTSCTTSCCCCCSSGGGSCTTTTTTCCBCBCCCCST
T ss_pred CCCCCCCEECCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCCC
T ss_conf 98878706458874387618888888732102478999999997713734355335147778875102222201101310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 Ts~LP~~~~~s~~~g~~~~s~d~~gL~~a~a~ti~~lr~a~flQr~~Ei~argG~r~~~~v~~~d~rlqr~eylggg~~~ 240 (417)
T d1gff1_ 161 TAPLPPDTRTSENMTTGTSTIDIMGLQAAYAKLHTEQERDYFMTRYRDIMKEFGGHTSYDGDNRPLLLMRSEFWASGYDV 240 (417)
T ss_dssp TSCCCTTCCSCCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHTTTCCCCTTTTTCCEEEEEEEEEECCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf 13589998877556888664470435666667899999999999999999734983554576827765214765366422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~Tdqt~lg~~sg~g~~~~~~~v~~~~~~EHG~I~~L~~vr~~~t~~q~~~~~~~~~d~~~p~fa~Dp~l~geqP~~n~e 320 (417)
T d1gff1_ 241 DGTDQSSLGQFSGRVQQTFNHKVPRFYVPEHGVIMTLAVTRFPPTHEMEMHYLVGKENLTYTDIACDPALMANLPPREVS 320 (417)
T ss_dssp ECCSTTTTTCEEEECEEEEEEEEEEEECCSSEEEEEEEEEECCCCBTTBCCHHHHSSSCCHHHHSCCHHHHTTSCCEEEE
T ss_pred CCCCCCCHHHHCCCEEEECCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCCCCHHHCCCHHHHCCCCCCCCC
T ss_conf 46653112331032487215633553245541899999853786101045541562001452330680110347742323
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 i~~~~~s~d~~v~Gy~~r~~~YR~~p~~V~g~f~sLd~W~~~~~~psl~~~~~v~v~~~~~D~~f~s~~~~q~~~~~~fn 400 (417)
T d1gff1_ 321 LKEFFHSSPDSAKFKIAEGQWYRTQPDRVAFPYNALDGFPFYSALPSTDLKDRVLVNTNNYDEIFQSMQLAHWNMQTKFN 400 (417)
T ss_dssp TTTTBSSCCTTCEEEECTTGGGSCCCCCCCTTTTTCTTCCSBCSCCCSSTGGGTBCCGGGGGGGBSSCSSCSEEEEEEEE
T ss_pred HHHHCCCCCCCEEECCHHHHHHHCCCHHCCCCCCCCCCCEEECCCCCCCHHHCEEECCCCCCHHHHCCCHHHHHEEEEEE
T ss_conf 54404778864014012045552472010200004564132114889984460152687503666137505500114775
Q ss_pred ----------------E
Q ss_conf ----------------8
Q 001511 467 ----------------K 467 (1064)
Q Consensus 467 ----------------~ 467 (1064)
+
T Consensus 401 ~~v~R~mPt~~~~i~~~ 417 (417)
T d1gff1_ 401 INVYRHMPTTRDSIMTS 417 (417)
T ss_dssp EEEECCCCCHHHHSCCC
T ss_pred EEEEECCCCCCCCCCCC
T ss_conf 67860489854332469
|
| >d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial beta-amylase species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=0 Score=31484.53 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~v~VmlPLd~v~~~~~~~~~~~~L~~LK~aGV~gV~vdVwWGivE~~~Pg~Ydws~yd~l~~mv~~~GL 80 (417)
T d1vema2 1 AVNGKGMNPDYKAYLMAPLKKIPEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGM 80 (417)
T ss_dssp CGGGCCCCTTCEEEEECCSSCGGGTSCHHHHHHHHHHHHHTTEEEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 98887788995389986622245667889999999999983997899933424310589983570899999999998698
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 Ki~vvmsfH~cGgnvgd~~ti~lP~Wv~e~~~~pDi~~tDr~G~r~~E~LS~~~d~t~~~~y~~~~~sF~~~f~~~~~~I 160 (417)
T d1vema2 81 KMIPIISTHQCGGNVGDDCNVPIPSWVWNQKSDDSLYFKSETGTVNKETLNPLASDVIRKEYGELYTAFAAAMKPYKDVI 160 (417)
T ss_dssp EEEEEEECSCBSSSTTCCCCBCCCGGGGGGCSSSCSSEECTTCCEECSSCCTTCHHHHHHHHHHHHHHHHHHTGGGGGGB
T ss_pred EEEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 28999874235787788615688888870554888167768898883703766698701004167887999987740047
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~ei~vglGp~GELRYPsyp~~~gW~~pg~GefqCYd~~~~~~fr~wl~~ky~al~aln~aWG~~~~~~~~~~~p~~~~ff 240 (417)
T d1vema2 161 AKIYLSGGPAGELRYPSYTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILPPSDGEQF 240 (417)
T ss_dssp CCEEECCSGGGBSSCCCCCTTTTCCTTSCCCCCCCSHHHHHHHHHHHHHHHSSHHHHHHHHTCCCSSGGGCCSCSCHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 99986057420003788810015657998866578999999999999860665632235228999754576778888766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~g~~s~YG~fFL~WYs~~L~~Hgdrvl~~A~~~F~~~~~v~l~~Kv~giHWwy~~~t~shaaElTAGydgY~~i~~~~ 320 (417)
T d1vema2 241 LMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAGYNDYSHLLDAF 320 (417)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEEECCCCTTTTCSSSTTTTHHHHTCSCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHH
T ss_conf 67983533335589999999999999999999985189877279999465033689999874154405855779999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~r~~~~l~ftc~em~d~~~~~~~s~Pe~Lv~qv~~aa~~~gv~~~gENAl~~~d~~~~~~i~~~~~~~~~~~fTylRm~~ 400 (417)
T d1vema2 321 KSAKLDVTFTCLEMTDKGSYPEYSMPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYNFAGFTLLRYQD 400 (417)
T ss_dssp HHHTCEEEESCCSCCCCCCTTTCCCHHHHHHHHHHHHHHHTCCEEEECSSCCCSHHHHHHHHHHHHHTTCSEEEESCHHH
T ss_pred HHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCH
T ss_conf 86697598761244568899655797999999999999829936510053014867999999971127876157975656
Q ss_pred ----------------E
Q ss_conf ----------------8
Q 001511 467 ----------------K 467 (1064)
Q Consensus 467 ----------------~ 467 (1064)
.
T Consensus 401 ~l~~~~n~~~F~~fv~~ 417 (417)
T d1vema2 401 VMYNNSLMGKFKDLLGV 417 (417)
T ss_dssp HHTCHHHHHHHHHHTSC
T ss_pred HHCCCCCHHHHHHHHCC
T ss_conf 55796428889887439
|
| >d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Nitric oxide (NO) synthase oxygenase domain superfamily: Nitric oxide (NO) synthase oxygenase domain family: Nitric oxide (NO) synthase oxygenase domain domain: Nitric oxide (NO) synthase oxygenase domain species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=0 Score=31420.62 Aligned_cols=1 Identities=0% Similarity=-2.617 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~p~~~~~kn~~~~~~~~dtlh~~~~~~~~C~~~~C~gs~m~~~~~~~~p~~~~~~~e~ll~eA~~Fi~q~y~e~~~~~~~ 80 (416)
T d1q2oa_ 1 GPKFPRVKNWELGSITYDTLCAQSQQDGPCTPRRCLGSLVLPRKLQTRPSPGPPPAEQLLSQARDFINQYYSSIKRSGSQ 80 (416)
T ss_dssp CCSSCEEEBTTTCCEEECCGGGGCCBCCSCCSSCBCTTCSCC-----------CCHHHHHHHHHHHHHHHHHHTTCTTSH
T ss_pred CCCCEEEEECCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99745655404687563324442678899876733560025644466888999998999999999999999862756778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~R~~ev~~eI~~tGtY~~T~eEL~~GAk~AWRNs~RCIGR~~W~~L~V~D~R~v~t~~~mfeal~~Hi~~ATN~G~I 160 (416)
T d1q2oa_ 81 AHEERLQEVEAEVASTGTYHLRESELVFGAKQAWRNAPRCVGRIQWGKLQVFDARDCSSAQEMFTYICNHIKYATNRGNL 160 (416)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHCTTCTTGGGTTCCEEEECTTCCSHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999997464620899999887899870455222300216572665678999899999999999997079987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 r~~ITVFp~~~~g~~~~RIwN~QLIrYAGY~~~dGsiiGDPa~vefT~~c~~lGW~~~~t~FDvLPLViq~~g~~p~~fe 240 (416)
T d1q2oa_ 161 RSAITVFPQRAPGRGDFRIWNSQLVRYAGYRQQDGSVRGDPANVEITELCIQHGWTPGNGRFDVLPLLLQAPDEAPELFV 240 (416)
T ss_dssp CCEEEECCCCBTTBCCCEECSSBSSCBCEEECTTSCEEECGGGHHHHHHHHHTTCCCCCSSSCBCCEEEECTTSCCEEEC
T ss_pred CEEEEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCEEEE
T ss_conf 63389737988999986675488786626578998764684216999999976888999987710289997899972673
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 iP~elvlEV~i~HP~~~wf~~LgLkWyavPaiSnM~L~iGGi~y~aaPFNGWYM~TEIgaRnl~D~~RYN~L~~VA~~mG 320 (416)
T d1q2oa_ 241 LPPELVLEVPLEHPTLEWFAALGLRWYALPAVSNMLLEIGGLEFSAAPFSGWYMSTEIGTRDLCDPHRYNILEDVAVCMD 320 (416)
T ss_dssp CCGGGSCEEECCCSSCGGGGGGCCEEESCCEECSCEEEETTEEESCCCEECCCBHHHHHTHHHHCTTTTCCHHHHHHHTT
T ss_pred CCHHHEEEECCCCCCCCHHHHCCCCEEECCHHCCCEEEECCEEECCCCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 88778357346798983066638857605211255000077844245645330022355430455566666899999848
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 LDT~~~~sLWkDrAlvElN~AVLhSF~~~gVtIvDHHtas~~F~~~~~~E~~~~r~~pgdW~WlvPP~S~s~TpvfH~~~ 400 (416)
T d1q2oa_ 321 LDTRTTSSLWKDKAAVEINLAVLHSFQLAKVTIVDHHAATVSFMKHLDNEQKARGGCPADWAWIVPPISGSLTPVFHQEM 400 (416)
T ss_dssp CCTTCGGGCHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHSCCBCCHHHHSCSSSGGGSGGGGBCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHH
T ss_conf 78889740467789999999999899877964704068899999999999983899998852777888754541676665
Q ss_pred ---------------E
Q ss_conf ---------------8
Q 001511 467 ---------------K 467 (1064)
Q Consensus 467 ---------------~ 467 (1064)
=
T Consensus 401 ~n~~l~P~f~yq~~~w 416 (416)
T d1q2oa_ 401 VNYILSPAFRYQPDPW 416 (416)
T ss_dssp BBCBCSSEEECCCCCC
T ss_pred HHCCCCCCCCCCCCCC
T ss_conf 5034588865589999
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31417.83 Aligned_cols=1 Identities=100% Similarity=1.201 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 l~~~~~l~~~D~ei~~~i~~e~~rq~~~i~LiaSEN~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~r 80 (416)
T d1dfoa_ 1 LKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDR 80 (416)
T ss_dssp CCTTCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98658845519999999999999987690586476657899999855741475658899975447773099999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 a~~lF~a~~anVqp~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~ 160 (416)
T d1dfoa_ 81 AKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQ 160 (416)
T ss_dssp HHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHH
T ss_pred HHHHHCCCCCEEECCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 99983998205601557557999999863898866421465433335555544467237999646687667447899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 a~~~kPklIi~G~S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~aDvvt~tThKtlrGPrggiI~~ 240 (416)
T d1dfoa_ 161 AKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILA 240 (416)
T ss_dssp HHHHCCSEEEEECSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTTSSEEEEESSSTTCCCSCEEEEE
T ss_pred HHHHCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEECCHHHHHCCEECCCCCCCCCCCCEEEEEHHHCCCCCCCEEEEE
T ss_conf 99836564873432255655879999998751715872212000003244347860000046521001046878638984
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~iv~ggTdnHlvlv 320 (416)
T d1dfoa_ 241 KGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLV 320 (416)
T ss_dssp SSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
T ss_conf 23117689998766086534685177898988779987097889999999999999999998389443369988753688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 dl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~~~~~~~~~~ 400 (416)
T d1dfoa_ 321 DLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDSINDEAVIER 400 (416)
T ss_dssp ECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 73045898999999999729688678588999988889821767789984899879999999999999972786799999
Q ss_pred ---------------E
Q ss_conf ---------------8
Q 001511 467 ---------------K 467 (1064)
Q Consensus 467 ---------------~ 467 (1064)
.
T Consensus 401 ir~~V~~l~~~fPly~ 416 (416)
T d1dfoa_ 401 IKGKVLDICARYPVYA 416 (416)
T ss_dssp HHHHHHHHHHHSCSBC
T ss_pred HHHHHHHHHHCCCCCC
T ss_conf 9999999998089989
|
| >d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: L-rhamnose isomerase domain: L-rhamnose isomerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31416.44 Aligned_cols=1 Identities=0% Similarity=0.470 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 s~i~~~ye~a~e~ya~~GID~e~al~~L~~~~Is~h~WqGddv~gFe~~~g~ltGGi~~tGnyPG~aR~~~E~~~D~~~~ 80 (416)
T d1d8wa_ 1 TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQA 80 (416)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHTTCCEEEEGGGGTTTCCCCC--------------CSCCCCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 91679999999999983988999999985484443036678765534677767776021278899889989999889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~Lipg~~~vnLH~~y~~~~~~vdrd~i~p~hf~~w~~wAk~~glglDfNpt~Fshp~~~~g~sLshpd~~iR~~wI~H~ 160 (416)
T d1d8wa_ 81 MRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHC 160 (416)
T ss_dssp HHTSCSCEEEEEEGGGCCCSSCCCGGGCCGGGGHHHHHHHHHTTCEEEEECCCSSSGGGTTSCSTTCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 98568998400033320258866412258574899999999749774757655578442257762588889999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~c~~I~~~~G~~~g~~~v~niWi~DG~k~~~~d~~~~R~Rl~eSLdeI~a~~~d~~~~ld~vE~K~Fg~g~esy~vgs~ 240 (416)
T d1d8wa_ 161 KASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSN 240 (416)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEECCCCEESSCCSCSHHHHHHHHHHHHHHTCSCCCTTTEEEEEECCSCBTTBCSEESSCH
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCEEEECCCH
T ss_conf 99999999986300776204776577676888683159999999999998715876650454230125565035763738
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 df~~~yal~~~a~~llD~GH~hPtenI~dkisalll~~~~~~lH~sr~~rwDsDhvvi~~del~~I~~ElVr~~~ld~v~ 320 (416)
T d1d8wa_ 241 EFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVH 320 (416)
T ss_dssp HHHHHHHHHHTCEEEEETTSSCTTCCHHHHHHHHTTTSSCEEEEECBCSSSSCCBCCCSSHHHHHHHHHHHHTTGGGTEE
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE
T ss_conf 88998763489679986798787665999999999727542576388856677612036489999999999645544422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~LD~fdasinrI~a~v~g~rn~qka~l~ALL~p~~~L~~~q~~gD~t~rla~~Ee~K~~P~~avW~~~c~r~~vp~~~~ 400 (416)
T d1d8wa_ 321 IGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAPGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSE 400 (416)
T ss_dssp EEECCCCCSSCHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHTTTCHHHHHHHHHHHTTSCHHHHHHHHHHHTTCCCSTT
T ss_pred ECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 30023422466199999999999999999976899999999986799999999999851981889999999739998768
Q ss_pred ---------------E
Q ss_conf ---------------8
Q 001511 467 ---------------K 467 (1064)
Q Consensus 467 ---------------~ 467 (1064)
.
T Consensus 401 ~~~~v~~Ye~~v~~kR 416 (416)
T d1d8wa_ 401 WLESVRAYEKEILSRR 416 (416)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 8999999999885349
|
| >d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RNB domain-like domain: Exosome complex exonuclease RRP44 species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=100.00 E-value=0 Score=31413.03 Aligned_cols=1 Identities=0% Similarity=0.935 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~Dl~~l~~~tID~~~a~d~DDAisi~~~~~g~~~l~VHIADva 80 (416)
T d2vnud4 1 FSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVT 80 (416)
T ss_dssp CCHHHHTTSCTTGGGCCCCSSTTCHHHHHHCGGGGGSEECTTSCCEEEESSSCCCCCEEEEEEECTTSCEEEEEEEECHH
T ss_pred CCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCHH
T ss_conf 98789964432368643764453122115752323771177898799769999546565899995899599999983578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~v~~~s~Ld~~A~~R~~t~Ylp~~~~pMLP~~ls~~~~SL~~~~~r~a~s~~~~~~~~g~i~~~~~~~s~I~~~~~ltY 160 (416)
T d2vnud4 81 HFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSY 160 (416)
T ss_dssp HHSCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHTTTSSCCBTSEEEEEEEEEEECTTCCEEEEEEEEEEEEBSEEEEH
T ss_pred HHHCCCCHHHHHHHHHCEEEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCEEEHHHHCCCCCCCH
T ss_conf 86299998999999848037589971144788886545205698202467765540210144420332012033322321
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~ev~~~l~~~~~~~~~~~~l~~L~~~a~~l~~~R~~~g~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~s~~lVeE~Mi~A 240 (416)
T d2vnud4 161 EQAQLRIDDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFMLLA 240 (416)
T ss_dssp HHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEECSSSSCEEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHH
T ss_conf 66788751354321000678999999999999998568754578742799423335565431122242014078776543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 N~~vA~~l~~~~~~~~~~R~h~~p~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 320 (416)
T d2vnud4 241 NISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMSTRCMM 320 (416)
T ss_dssp HHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCCSCHHHHHHHHHTCCBTTBTTHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 08999999984788876400079997999999999997012676865225578999987475672699999999887788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~a~~~~~~~~s~~~~~H~gLgl~~YthfTSPIRRY~DLv~hrqL~a~l~~~~~~~~~~~~e~l~~i~~~~~~~e~~a~~a 400 (416)
T d2vnud4 321 AAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQFA 400 (416)
T ss_dssp CCEEEEGGGSCGGGGCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHTTSSCCCGGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87763015579976273765722015168677637899999999999737999977443999999999999999999999
Q ss_pred ---------------E
Q ss_conf ---------------8
Q 001511 467 ---------------K 467 (1064)
Q Consensus 467 ---------------~ 467 (1064)
+
T Consensus 401 er~~~~~~~~~~lk~~ 416 (416)
T d2vnud4 401 GRASIEYYVGQVMRNN 416 (416)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999997578
|
| >d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31408.96 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 k~~~~~v~~~~~~w~~pRw~~ikR~Yta~dV~~lRgs~~~~~~~a~~~A~kL~~lL~~~~~~~~v~~lGa~d~~~A~~~~ 80 (416)
T d1igwa_ 1 KTRTQQIEELQKEWTQPRWEGITRPYSAEDVVKLRGSVNPECTLAQLGAAKMWRLLHGESKKGYINSLGALTGGQALQQA 80 (416)
T ss_dssp CCHHHHHHHHHHHTTSGGGTTCCCSSCHHHHHHTTCSCCCCCHHHHHHHHHHHHHHTTTSSSSSEEEEBCCSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHH
T ss_conf 96799999999986696515689998999999966985876837899999999998604445706547757799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 kaGf~aiYvSG~~~sA~~~~~~~~~PD~gl~~~~~v~~~~~~I~~a~~~~d~~~~~~~~~~~~~~~~d~~lPIIADaDtG 160 (416)
T d1igwa_ 81 KAGIEAVYLSGWQVAADANLAASMYPDQSLYPANSVPAVVERINNTFRRADQIQWSAGIEPGDPRYVDYFLPIVADAEAG 160 (416)
T ss_dssp HHTCCCEEECHHHHHHHSCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCTTCTTCCCCCCCEEEECTTC
T ss_pred HCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCC
T ss_conf 80998899646100165555678877765462889999999999988889999875200235444444310157742245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 fG~~~nv~r~vk~~i~AGaagihiEDQ~~~~KkCGHl~gK~lv~~~e~~~ki~AA~~a~d~~~~~~~IiARTDA~~a~li 240 (416)
T d1igwa_ 161 FGGVLNAFELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARLCADVTGVPTLLVARTDADAADLI 240 (416)
T ss_dssp SSSHHHHHHHHHHHHHTTCSEEEEESBCGGGCCCC----CEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHH
T ss_conf 67658999999999967871897226766430100148974678999999999999877427998279986230555444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~sd~d~~D~~fi~g~Rt~eG~yr~~~G~d~aI~R~~aya~gADli~~Et~~~~~e~a~~fa~~v~~~~p~~~l~yn~SPs 320 (416)
T d1igwa_ 241 TSDCDPYDSEFITGERTSEGFFRTHAGIEQAISRGLAYAPYADLVWCETSTPDLELARRFAQAIHAKYPGKLLAYNCSPS 320 (416)
T ss_dssp SCCCCGGGGGGEEEEECTTSCEEECCSHHHHHHHHHHHGGGCSEEEECCSSCCHHHHHHHHHHHHHHSTTCEEEEECC--
T ss_pred HCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCC
T ss_conf 20131115672057647343522247859999999984322667753168998999999998607876567623478887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 fnw~~~~~~~~~~~~~~eL~~lGy~~~~~~la~~ha~~~a~~~l~~~~~~~~gm~ayv~~~Q~~E~~~~~~g~~~~~hQ~ 400 (416)
T d1igwa_ 321 FNWQKNLDDKTIASFQQQLSDMGYKFQFITLAGIHSMWFNMFDLANAYAQGEGMKHYVEKVQQPEFAAAKDGYTFVSHQQ 400 (416)
T ss_dssp --------------HHHHHHHHTEEEEEETTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTHHHHHHHHTTTCCTTSHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEHHH
T ss_conf 67201235567999999999659888996768999999999999999863498899999875898887744863020886
Q ss_pred ---------------E
Q ss_conf ---------------8
Q 001511 467 ---------------K 467 (1064)
Q Consensus 467 ---------------~ 467 (1064)
-
T Consensus 401 ~~G~~y~D~~~~~~~g 416 (416)
T d1igwa_ 401 EVGTGYFDKVTTIIQG 416 (416)
T ss_dssp HTTHHHHHHHHHHHCC
T ss_pred HHCCCHHHHHHHHHCC
T ss_conf 7542489999987169
|
| >d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: Isocitrate dehydrogenase, ICDH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31407.45 Aligned_cols=1 Identities=0% Similarity=0.469 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~IavipGDGIGPEV~~ealkVL~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~ 80 (416)
T d1pb1a_ 1 MESKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQ 80 (416)
T ss_dssp CCCCCCCCSSCBCCEEETTEEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCSHHHHHHHCT
T ss_pred CCCCCCCCCCCCEEEEECCEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHCC
T ss_conf 99752279998679977998818999889998988624999999999999999874268985589998235799998499
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~lp~~t~~~~~~~da~l~Gav~~P~~~~~~~~~l~lR~~ldlyanvRP~r~~pg~~spl~~~~~iD~vIvREnteG~Y 160 (416)
T d1pb1a_ 81 DVWLPAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIY 160 (416)
T ss_dssp TCSSCHHHHHHHHHHSEEEECCCCCCSSSCCCCHHHHHHHHTTCCEEEEEEECCTTCCCSSSCGGGCEEEEEEECSSGGG
T ss_pred CCCCCHHHHHHHHHCCEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 77799999999985498952886699988876667889987486474132002678886434556446599861134422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~t~~~~~Ri~r~AF~~A~~~~r~~vt~v~Kanvl~~~~gl 240 (416)
T d1pb1a_ 161 AGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGA 240 (416)
T ss_dssp GCCEECTTCHHHHHHHHHHHHTSCCCCCSCCSSCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH
T ss_conf 45033456520688998766530530113653036765402122228999999999996699968999789765401678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 f~~~~~e~a~e~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~Ggl 320 (416)
T d1pb1a_ 241 FKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGI 320 (416)
T ss_dssp HHHHHHHHHHHHHCCEECTTSSCEEEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCC
T ss_conf 99999999987631223344431101046676334289999999999985210467789613578777777888862376
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 Gl~pSanig~~~a~fEp~HGSAPdiaGk~iANP~a~Ils~amML~~lg~~~~A~~i~~Av~~~l~~g~~T~Dl~~~~~~g 400 (416)
T d1pb1a_ 321 GIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMDGA 400 (416)
T ss_dssp TTCCCEEECSSCEEEECCSCCCGGGTTSSCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTEECHHHHTTSSSC
T ss_pred CCCCCCCCCCCCEEEECCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 65445466877248877888615547999759299999999999987997899999999999997598124300046899
Q ss_pred ---------------E
Q ss_conf ---------------8
Q 001511 467 ---------------K 467 (1064)
Q Consensus 467 ---------------~ 467 (1064)
-
T Consensus 401 g~~~T~e~~daI~~~l 416 (416)
T d1pb1a_ 401 KLLKCSEFGDAIIENM 416 (416)
T ss_dssp EECCHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHCC
T ss_conf 7727999999999659
|
| >d1dnva_ b.121.5.3 (A:) Densovirus capsid protein {Galleria mellonella densovirus [TaxId: 37138]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: ssDNA viruses family: Densovirinae-like VP domain: Densovirus capsid protein species: Galleria mellonella densovirus [TaxId: 37138]
Probab=100.00 E-value=0 Score=31338.89 Aligned_cols=1 Identities=0% Similarity=0.869 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~IpRPi~~~~~~~~tyrK~HkFltfGlA~kvi~~~~t~~t~~~~~lTTsLaeiPw~~p~~YMnpsEF~lLP~Gs~v~e 80 (415)
T d1dnva_ 1 VYIIPRPFSNFGKKLSTYTKSHKFMIFGLANNVIGPTGTGTTAVNRLLTTCLAEIPWQKLPLYMNQSEFDLLPPGSRVVE 80 (415)
T ss_dssp CCCCCCCCCCCCCEECCEEEEEEEEEECCCSCCCEECSSTTTCSBEEEEEEEEECCTTBGGGTCCHHHHHTCCTTCBCCC
T ss_pred CEEECCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHEEHHHCCCCCCCEECCHHHHHHCCCCCEEEE
T ss_conf 93746676778886799965446776200121001456662023232210151160345525248878710689866889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~vkvv~rn~RiAFeTnSS~T~lATLNQnk~~~~A~GLN~~~~G~nr~~T~f~s~epMiPt~t~~~~y~~v~~~~~y~~~ 160 (415)
T d1dnva_ 81 CNVKVIFRTNRIAFETSSTVTKQATLNQISNVQTAIGLNKLGWGINRAFTAFQSDQPMIPTATTAPKYEPVTGDTGYRGM 160 (415)
T ss_dssp EEEEEEEEEEEECCCCSCTTSCCCCSCCCCEEEEESTHHHHTTCBCCCCCCCCSSSCCSCCCCCCCCSSEECSSSCEECH
T ss_pred EEEEEEEECCEEEEEECCCCCCCEECCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 77899984670577755763101001022330110100302454213654556888745667786522355654689999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 v~~~YG~~~~n~~~~~~~~~~P~hq~g~~~~L~nYfc~~~~~~~~tgGwpcl~~hi~e~da~~~~g~~vl~~~YkPk~g~ 240 (415)
T d1dnva_ 161 IADYYGADSTNDTAFGNAGNYPHHQVSSFTFLQNYYCMYQQTNQGTGGWPCLAEHLQQFDSKTVNNQCLIDVTYKPKMGL 240 (415)
T ss_dssp HHHHHCCCSSCTTSSSSSSSCCGGGGCCEEECCCEEEECCBSSSSCCCCCCGGGGSEECCTTTTTTSBCCCCEECCSSCB
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC
T ss_conf 99974766678633457777875672772110002577652046889836789998750256678857888852776432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ik~P~~~~i~g~p~~~g~~sv~~n~~~~~~a~~~~~~~at~n~s~s~~nl~~~fp~~~~~iyt~IEKsQ~~~~G~~g~~~ 320 (415)
T d1dnva_ 241 IKSPLNYKIIGQPTVKGTISVGDNLVNMRGAVVTNPPEATQNVAESTHNLTRNFPADLFNIYSDIEKSQVLHKGPWGHEN 320 (415)
T ss_dssp CSCCCCBCCCCCTTBTTBBSCCCCCCCSCCSCEECCCCCBCSSSCBCCCCCEECCCCCCCCCSSCTTSSBSCCTTTCCCT
T ss_pred CCCCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCCHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHEECCCCCCCC
T ss_conf 46743354336655332120010044225765478255443321200204315884103023422133402126766668
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 p~iQPSlHIGv~pVPaLTTa~l~~~~~~~~n~TDt~~ywdV~~~~~V~~~~Pt~~P~~~~~nv~~~~~~y~~nl~~~~~t 400 (415)
T d1dnva_ 321 PQIQPSVHIGIQAVPALTTGALLINSSPLNSWTDSMGYIDVMSSCTVMEAQPTHFPFSTEANTNPGNTIYRINLTPNSLT 400 (415)
T ss_dssp TCCCCCCCCCCEEEEECCBCCCCSSCCSCCCBCCEEEEEEEEEEECCEECCCCCSTTCCSCCBCTTTCCCCCCCSSCSSC
T ss_pred CCCCCCEEECCEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 75376246332204400113223378776762202589999988999855886544556678883303230446765556
Q ss_pred --------------E
Q ss_conf --------------8
Q 001511 467 --------------K 467 (1064)
Q Consensus 467 --------------~ 467 (1064)
.
T Consensus 401 s~~~GlY~~~~~~~~ 415 (415)
T d1dnva_ 401 SAFNGLYGNGATLGN 415 (415)
T ss_dssp SSSCCSSSCCSSCCC
T ss_pred CCCCCEEECCHHCCC
T ss_conf 521212641110379
|
| >d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: PDEase domain: cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=31337.35 Aligned_cols=1 Identities=200% Similarity=2.397 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~~~~~~~~l~~l~~W~Fd~f~l~~~~~~~~~~~L~~~~~~lf~~~gl~~~f~i~~~~l~~Fl~~v~~~Y~~nPYHN 80 (415)
T d1so2a_ 1 LDLILVEEYDSLIEKMSNWNFPIFELVEKMGEKSGRILSQVMYTLFQDTGLLEIFKIPTQQFMNYFRALENGYRDIPYHN 80 (415)
T ss_dssp CCSHHHHHHHHHHHHHTSTTCCHHHHHHHHGGGGGGHHHHHHHHHHHHTTHHHHTTCCHHHHHHHHHHHHTTSCSCSSSS
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHCCHHHCCCCCCHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 96110688999997224689882020155212334489999999999778377529899999999999998579998827
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~HA~dV~q~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lE~~alliAA 160 (415)
T d1so2a_ 81 RIHATDVLHAVWYLTTRPVPGLQQIHNGCGTGNETDSDGRINHGRIAYISSKSCSNPDESYGCLSSNIPALELMALYVAA 160 (415)
T ss_dssp HHHHHHHHHHHHHHTTSCEETCCCCCCC---------------CCCCCCCCTTCCCSSTTEECGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHH
T ss_conf 89999999999999956554422111222233221111222332100122222333322201565408999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 l~HDvdHpG~nN~Flv~t~~pLA~lYnd~SVLEnhH~a~a~~lll~~~~~nil~~l~~~e~~~~r~lii~~ILATDm~~H 240 (415)
T d1so2a_ 161 AMHDYDHPGRTNAFLVATNAPQAVLYNDRSVLENHHAASAWNLYLSRPEYNFLLHLDHVEFKRFRFLVIEAILATDLKKH 240 (415)
T ss_dssp HHTTTTCCSCCHHHHHHTTCHHHHHTTTSSHHHHHHHHHHHHHHHTCGGGCTTTTSCHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHCCCCCCCCHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 97226999966889987188789985898888999999999999648542143069999999999999999970464567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 f~~l~~f~~~~~~~~~~~~~~~~~~~r~lv~~~lik~ADIs~~~rp~~v~~~W~~~l~~EF~~QGd~E~~lglp~sp~~D 320 (415)
T d1so2a_ 241 FDFLAEFNAKANDVNSNGIEWSNENDRLLVCQVCIKLADINGPAKVRDLHLKWTEGIVNEFYEQGDEEANLGLPISPFMD 320 (415)
T ss_dssp HHHHHHHHHHHTSSSCCCCCTTCHHHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999998740047767787888999999999998624744582889999999999999987799866999985668
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 R~~~~~~k~QigFi~~iv~PLf~~l~~a~~~~~~~~~~~~~n~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (415)
T d1so2a_ 321 RSSPQLAKLQESFITHIVGPLCNSYDAAGLLPGQWLEAEEDNDTESGDDEDGEELDTEDEEMENNLNPKPPRRKSRRRIF 400 (415)
T ss_dssp TTSCCHHHHHHHHHHHTHHHHHHHHHHTTCSCCEECC-------------------------------------CCSSEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 66564157899999998999999999983255999999998898778757664134400015554455776056677776
Q ss_pred --------------E
Q ss_conf --------------8
Q 001511 467 --------------K 467 (1064)
Q Consensus 467 --------------~ 467 (1064)
+
T Consensus 401 ~~~~~~l~en~~~w~ 415 (415)
T d1so2a_ 401 CQLMHHLTENHKIWK 415 (415)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 689999986255129
|
| >d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Pyruvate dehydrogenase E1 component, PP module species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31337.00 Aligned_cols=1 Identities=0% Similarity=0.968 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~~~~~~~~~~~~p~~~~~e~~~~~~iR~~~~~~v~~a~~~~~~~GGH~g~~ls~~~l~~vl~~~~~~~p~~~~~d~ 80 (415)
T d2ieaa2 1 ISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGD 80 (415)
T ss_dssp CCCSSCSSCGGGCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCCCCHHHHHHHHHHHHHHHHTCCCCCSSSCCC
T ss_pred CCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99853688854368999889999999999999999999982678998898254679999999999985148987688887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~ilskGHas~~lYa~l~~~g~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~a~~~ 160 (415)
T d2ieaa2 81 LVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRG 160 (415)
T ss_dssp EEECCGGGHHHHHHHHHHTTSSCHHHHTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 79835750299999999839875035777753135789898888777888776798202157899999999987876530
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~gDg~~~eg~~~ea~~~a~~~~l~nl~~i~d~N~~~~~~~~~~~~~~~~~~~~~~~~~gw~v~~~~~~ 240 (415)
T d2ieaa2 161 LKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWG 240 (415)
T ss_dssp SCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBC
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCEEECCCHHCCCCCHHHHHHHHHHCCCEEEEEECC
T ss_conf 23578842899954320023899999988887288808999967863356671014311488999998648626874031
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~d~~~al~~~~~~~v~g~~~~~~~~~ga~~~~~~~~~~~~~~~l~~~l~~~~~~~l~~dGHd~~~l~~a~~~ 320 (415)
T d2ieaa2 241 SRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKK 320 (415)
T ss_dssp GGGHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTGGGSHHHHTTSTTSCHHHHTTCCBGGGCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 02444320102434334121033431100002441566665303421046787663131455665315740446899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ak~~~d~P~vI~a~TiKGkGlp~A~e~~n~~H~~kkl~~Ee~~~~r~rl~~pl~d~~~e~~pf~~p~~~s~e~~~l~err 400 (415)
T d2ieaa2 321 AQETKGKATVILAHTIKGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHTYLHAQR 400 (415)
T ss_dssp HHHCCSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHHHTTCSCCHHHHTTCCCCCCCTTSHHHHHHHHHH
T ss_pred HHHCCCCCEEEEEECCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 98658996289973523368874334621012788899999999999839999813443179778888889999999999
Q ss_pred --------------E
Q ss_conf --------------8
Q 001511 467 --------------K 467 (1064)
Q Consensus 467 --------------~ 467 (1064)
+
T Consensus 401 ~~Lgg~lP~r~~~~~ 415 (415)
T d2ieaa2 401 QKLHGYLPSRQPNFT 415 (415)
T ss_dssp HTTTSCSSCCCSSCC
T ss_pred HHHCCCCCCCCCCCC
T ss_conf 984898876787889
|
| >d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=0 Score=31336.96 Aligned_cols=1 Identities=100% Similarity=0.138 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~ktl~d~~~~~K~VlvRvD~NvPi~~g~I~d~~RI~~~~pTi~~ll~~~akvvl~SH~GRPkg~~~~~~~~~~~~~~~~ 80 (415)
T d16pka_ 1 EKKSINECDLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGRPKGIPMAQAGKIRSTGGVP 80 (415)
T ss_dssp CBCBGGGSCCTTCEEEEEECCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCCBCGGGHHHHHHTTCCT
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99741013878998999934675555995897388999999999999788979999058998987555322222223312
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~sL~~~a~~L~~~l~~~V~f~~~~~~~~~~i~~l~~g~i~LLEN~Rf~~eE~~~~~~~~~~fak~LA~laDiyVN 160 (415)
T d16pka_ 81 GFQQKATLKPVAKRLSELLLRPVTFAPDCLNAADVVSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYIS 160 (415)
T ss_dssp TCCGGGCSHHHHHHHHHHHTSCCEEESCTTSCHHHHHTCCTTCEEEECCGGGBGGGGCSSHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 36833473889999998758674234431024456650577416874200024532322122138999998722868994
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 DAFg~sHR~haS~~Gi~~~lps~~gg~L~ekEl~~L~~~l~~p~~P~~aIlGGaKisdKi~~i~~l~~k~D~iligG~~a 240 (415)
T d16pka_ 161 DAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMA 240 (415)
T ss_dssp ECGGGTTSCCTTTTHHHHHHTCCEECHHHHHHHHHHHHHHSCCCSSEEEEECSSCSGGGHHHHHHHGGGCSEEEECTTHH
T ss_pred CCCCHHHCCCCCEECCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHH
T ss_conf 56202204675122200014224678999999999999970977551899853653437999998885365565322188
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ntfL~a~G~~iG~sl~e~~~~~~a~~i~~~~~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~ 320 (415)
T d16pka_ 241 YTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEK 320 (415)
T ss_dssp HHHHHHHTCCCTTCCCCGGGHHHHHHHHHHHHHTTCEEECCSSEEEESSSSCCSSCEECSSSCCCTTCEEEEECHHHHHH
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 89999809805544304443212666522321151678511203303101334443112222234543777787776667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~I~~AktI~wNGP~GvfE~~~F~~GT~~l~~~ia~~t~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~L~~ 400 (415)
T d16pka_ 321 YVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLEL 400 (415)
T ss_dssp HHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHHCCEEEECSHHHHHHHHHTTCTTTSSEECSCHHHHHHH
T ss_pred HHHHHHHHCEEEEECCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCEEECCHHHHHHH
T ss_conf 76766513569996653213155151799999999998413479989987789999999719735870798778999999
Q ss_pred --------------E
Q ss_conf --------------8
Q 001511 467 --------------K 467 (1064)
Q Consensus 467 --------------~ 467 (1064)
.
T Consensus 401 L~G~~LPgi~aL~~k 415 (415)
T d16pka_ 401 LEGKTLPGVTVLDDK 415 (415)
T ss_dssp HTTCCCHHHHTSCBC
T ss_pred HCCCCCCHHHHHHCC
T ss_conf 879996257785069
|
| >d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=31336.09 Aligned_cols=1 Identities=100% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~kltl~d~dl~gK~VlvRvD~NvPi~~g~I~Dd~RI~~~lpTI~~L~~~~ak~vIL~SH~GRP~g~~~~~~Sl~~va 80 (415)
T d1qpga_ 1 SLSSKLSVQDLDLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGQPNGERNEKYSLAPVA 80 (415)
T ss_dssp CTTSBCBGGGCCCTTCEEEEECCCCCCBSSSSBSCCHHHHHHHHHHHHHHTTCCSEEEEECCCSCCCSSCCGGGCSHHHH
T ss_pred CCCCCCCHHHCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHH
T ss_conf 98666850322757998999932467643997896789999999999999879988999624899999879776869999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~I~LLENvRF~~eE~~~~~~~~~~~~~~~~n~~~fak~La~laDiyVN 160 (415)
T d1qpga_ 81 KELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYIN 160 (415)
T ss_dssp HHHHHHHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSHHHHTEEEETTEEEECCHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 99985319846984577776311012334467579942111143310246543011100100269999987547848996
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 DAFg~aHR~haS~~g~~~~~s~aG~lmekEl~~L~~~l~~p~rP~vaIlGGaKvsdKi~vl~~l~~k~D~iiigG~mant 240 (415)
T d1qpga_ 161 DAFGTAHRAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFT 240 (415)
T ss_dssp CCGGGTTSCCHHHHCCCCSCEEECHHHHHHHHHHHHHHSSCCSSEEEEECSSCSGGGHHHHHHHTTTCSEEEECGGGHHH
T ss_pred CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEEECHHHHH
T ss_conf 55011100565423455785633288999999999996499998599995476442899998787535557751103577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 flk~~~g~~ig~s~~e~~~~~~~~~i~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~ 320 (415)
T d1qpga_ 241 FKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKL 320 (415)
T ss_dssp HHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEEECCSEEEEESSSSSSCCCCEEETTTCCCTTCEEEEECHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHH
T ss_conf 88760377666531122211023689999876598675512278730245555531230013558765123466046789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~I~~a~tI~wNGP~GvfE~~~F~~GT~~i~~~ia~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~L~~L 400 (415)
T d1qpga_ 321 FAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELL 400 (415)
T ss_dssp HHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHTCEEEECCHHHHHHHHHTTCGGGSSEECCCTHHHHHHH
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHH
T ss_conf 99875368679997774152465240689999999997215798299957899999997598568806967789999998
Q ss_pred --------------E
Q ss_conf --------------8
Q 001511 467 --------------K 467 (1064)
Q Consensus 467 --------------~ 467 (1064)
.
T Consensus 401 ~G~~LPgi~aL~~~k 415 (415)
T d1qpga_ 401 EGKELPGVAFLSEKK 415 (415)
T ss_dssp TSCCCHHHHTSCBCC
T ss_pred CCCCCCHHHHHHHCC
T ss_conf 799970798885288
|
| >d2qeec1 c.1.9.8 (C:2-416) Uncharacterized protein BH0493 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Uronate isomerase-like domain: Uncharacterized protein BH0493 species: Bacillus halodurans [TaxId: 86665]
Probab=100.00 E-value=0 Score=31331.90 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~s~~~ia~~L~~~i~~~PIID~H~HL~p~~~~~~~f~~~~~l~~~hyyk~r~mr~~gv~e~~itg~~~~~~~~~~~~~ 80 (415)
T d2qeec1 1 SINSREVLAEKVKNAVNNQPVTDMHTHLFSPNFGEILLWDIDELLTYHYLVAEVMRWTDVSIEAFWAMSKREQADLIWEE 80 (415)
T ss_dssp CCCCHHHHHHHHHHHHHHSCEEECSCSCCCGGGGGGSBCSHHHHHTSHHHHHHHHTTCCSCHHHHHHSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHH
T ss_conf 97458999999999975898868888969778511677881888431799999998539998980789847889999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~p~~~w~~~~l~~~~~l~~~~~~~~~~~i~~~~~~~~~e~~~r~ll~~~nVe~v~tTDdP~D~L~~H~~~~~~~~ 160 (415)
T d2qeec1 81 LFIKRSPVSEACRGVLTCLQGLGLDPATRDLQVYREYFAKKTSEEQVDTVLQLANVSDVVMTNDPFDDNERISWLEGKQP 160 (415)
T ss_dssp HTTSSCCCSHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHTCCHHHHHHHHHHHTTEEEEECCBCTTCHHHHHHHHTTCCC
T ss_pred HHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 97428935899999888852567666767899999999762511179999998282035213797321899998604688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~v~ptfRpD~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (415)
T d2qeec1 161 DSRFHAALRLDPLLNEYEQTKHRLRDWGYKVNDEWNEGSIQEVKRFLTDWIERMDPVYMAVSLPPTFSFPEESNRGRIIR 240 (415)
T ss_dssp CTTEECCEECHHHHHCHHHHHHHHHHTTCCCCSSCSHHHHHHHHHHHHHHHHHHCCSCEEEEECTTCCSSCSSHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 75223002479886321007899999886145644576799999999999987325688885687788677999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~l~~~~~e~g~~mQlH~Ga~Rn~n~~~~~~g~~~g~~~~~~L~~ll~~~~~~k~il~~l~~~~~~e~a~lag~f~~v~l 320 (415)
T d2qeec1 241 DCLLPVAEKHNIPFAMMIGVKKRVHPALGDAGDFVGKASMDGVEHLLREYPNNKFLVTMLSRENQHELVVLARKFSNLMI 320 (415)
T ss_dssp HTHHHHHHHHTCCEEEEECEETTSSGGGGGGGCEECCCCSHHHHHHHHHCTTSCEEEEECCGGGHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCEEE
T ss_conf 99999987569817873376667773103478775767999999999848998879996896538999999853887067
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 gg~WWf~d~~~gm~~~l~~~~e~~~~~fvg~~TDsRsf~~~~~rheyfRRil~~~L~~~v~d~v~~g~~~~~~~l~~~v~ 400 (415)
T d2qeec1 321 FGCWWFMNNPEIINEMTRMRMEMLGTSFIPQHSDARVLEQLIYKWHHSKSIIAEVLIDKYDDILQAGWEVTEEEIKRDVA 400 (415)
T ss_dssp BCCCGGGCSHHHHHHHHHHHHHHHTTCSBCCCCCCSBTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 77016636899999999999874400112254586644303378999999999999999999973689997999999999
Q ss_pred --------------E
Q ss_conf --------------8
Q 001511 467 --------------K 467 (1064)
Q Consensus 467 --------------~ 467 (1064)
+
T Consensus 401 dI~y~Na~~yfg~~~ 415 (415)
T d2qeec1 401 DLFSRNFWRFVGRND 415 (415)
T ss_dssp HHHTHHHHHHHTCCC
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999828899
|
| >d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: Family B DNA polymerase species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=31328.39 Aligned_cols=1 Identities=0% Similarity=-1.623 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~iP~k~~~~~~~~~~~~~~~~~~~~y~Gg~V~~P~~G~~~~V~~lDf~SLYPSii~~~Ni~ 80 (415)
T d1s5ja2 1 EISTWVKNLYYWEHRKRNWLIPLKEEILAKSSNIRTSALIKGKGYKGAVVIDPPAGIFFNITVLDFASLYPSIIRTWNLS 80 (415)
T ss_dssp CHHHHHHHHHHHHHHHHTBCCCCHHHHHHTTCC--------------CCCCCCCSEEEEEEEEEEETTHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCHHHHHCCCCCCCCCEEECCCCCCCCCCEEEEECCCCCHHHHHHHCCC
T ss_conf 96489999999999977985789742245453201110034577387387079987657647878345339999996889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~R~~~~~~~~k~~~~~~~~~~~~d~~Q~A~Ki~~NS~ 160 (415)
T d1s5ja2 81 YETVDIQQCKKPYEVKDETGEVLHIVCMDRPGITAVITGLLRDFRVKIYKKKAKNPNNSEEQKLLYDVVQRAMKVFINAT 160 (415)
T ss_dssp TTTBSCSCCSSCCEECCSSSCCCEEBCCSSCCHHHHHHHHHHHHHHHTHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 30237534578765445799745786378887427899999999987420021123442268888788999999877777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 YG~~G~~~~~~~~~~~A~~iT~~GR~~i~~~~~~~~~~g~~viygDTDSv~v~~~~~~~~e~~~~~i~~~~~~~le~e~~ 240 (415)
T d1s5ja2 161 YGVFGAETFPLYAPRVAESVTALGRYVITSTVKKAREEGLTVLYGDTDSLFLLNPPKNSLENIIKWVKTTFNLDLEVDKT 240 (415)
T ss_dssp HHHHHSTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEESCCHHHHHHHHHHHHHHSSCCEEEEEE
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 77775466442328999899999999999888876605962466423314896288753999999987332212554425
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~KKrY~g~~~dgkl~~kGie~vRrd~~~~~k~~~~~vl~~il~~~~~~~~~~~~~~i~~~l~~~~~~l~~~~ 320 (415)
T d1s5ja2 241 YKFVAFSGLKKNYFGVYQDGKVDIKGMLVKKRNTPEFVKKVFNEVKELMISINSPNDVKEIKRKIVDVVKGSYEKLKNKG 320 (415)
T ss_dssp EEEEEEC----CEEEECSSSCCCEESCCC--------CCSHHHHHHHHHHTTCCSCCTTHHHHHHHHHHHHHHCTTC---
T ss_pred EEHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 51664431033203220255400110000356537889999999999997169878888878899999999999986079
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 i~~~dl~~~k~l~k~~~~Y~~~~p~hv~~A~~l~~~g~~~~~GdrI~YViv~~~~~~~p~~~~~~~~iD~~yYi~~l~~p 400 (415)
T d1s5ja2 321 YNLDELAFKVMLSKPLDAYKKNTPQHVKAALQLRPFGVNVLPRDIIYYVKVRSKDGVKPVQLAKVTEIDAEKYLEALRST 400 (415)
T ss_dssp -------------------------------------------------------------------CCSSTTHHHHHTT
T ss_pred CCHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 78688202320146734311799389999999985599999989899999947999882220357998889999999999
Q ss_pred --------------E
Q ss_conf --------------8
Q 001511 467 --------------K 467 (1064)
Q Consensus 467 --------------~ 467 (1064)
-
T Consensus 401 l~~il~~~g~~~~el 415 (415)
T d1s5ja2 401 FEQILRAFGVSWDEI 415 (415)
T ss_dssp STTHHHHHSCCCCCC
T ss_pred HHHHHHHHCCCHHHC
T ss_conf 999998628994439
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=31262.00 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~aFd~i~l~Pr~L~dvs~i 80 (414)
T d1kbia1 1 APGETKEDIARKEQLKSLLPPLDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKV 80 (414)
T ss_dssp CTTCCHHHHHHHHHHHHTCCCGGGCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSC
T ss_pred CCCCCHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCEEECCCCCCCCCC
T ss_conf 99885444556777631599812167999999999986888888887146665099999999997360665335787678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 Dlst~~lG~~l~~P~~Isp~g~~~~~~~~~~~~~~A~a~aa~~~~~~~~ls~~~~~~~~~~~~~a~~~~~~~~~q~y~~~ 160 (414)
T d1kbia1 81 DISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNS 160 (414)
T ss_dssp BCCEEETTEEESSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCS
T ss_pred CCCEEECCCCCCCCEEECHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHCCCCCC
T ss_conf 88534898417888788745640456822367887764777641365322322346568899872177541011021124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~l~~ra~~ag~~al~~tvD~~~~g~re~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~i~~ 240 (414)
T d1kbia1 161 DRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEE 240 (414)
T ss_dssp SHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf 58889999999987188510123344324651787872556654331444203554553277899985066899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 i~~~~~~~~i~kgi~~~~da~~~~~~G~~~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~D 320 (414)
T d1kbia1 241 LKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTD 320 (414)
T ss_dssp HHHHCSSCEEEEEECSHHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHH
T ss_pred HHCCCCCEEEEECCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
T ss_conf 86157752775200006777788743886245223211111112200000024666664111488513885388676789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 VaKALALGAdaVgigrp~L~~la~~G~egv~~~l~~l~~EL~~~M~l~G~~si~eL~~~~l~~~~~~~~~~~~p~~~~~~ 400 (414)
T d1kbia1 321 VLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLLDLSTLKARTVGVPNDVLYN 400 (414)
T ss_dssp HHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEECTTTTCEECCCCCCHHHH
T ss_pred HHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHCCCCCCCCCCCCCCCCHHHC
T ss_conf 99999758998877689999998446999999999999999999998589997891998834232243367899512210
Q ss_pred -------------E
Q ss_conf -------------8
Q 001511 467 -------------K 467 (1064)
Q Consensus 467 -------------~ 467 (1064)
.
T Consensus 401 ~~~~~~~~~~~~~~ 414 (414)
T d1kbia1 401 EVYEGPTLTEFEDA 414 (414)
T ss_dssp HHCCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCC
T ss_conf 35678775333679
|
| >d2b8na1 c.118.1.1 (A:4-417) Putative glycerate kinase (hypothetical protein TM1585) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: GckA/TtuD-like superfamily: GckA/TtuD-like family: GckA/TtuD-like domain: Putative glycerate kinase (hypothetical protein TM1585) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=31261.97 Aligned_cols=1 Identities=0% Similarity=-1.324 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~lr~~~~~if~a~v~av~P~~~v~~~l~~~~~~~i~vvg~GKAa~~MA~~~~~~lg~~i~~g~vv~~~~~~~~~~~~i 80 (414)
T d2b8na1 1 PESLKKLAIEIVKKSIEAVFPDRAVKETLPKLNLDRVILVAVGKAAWRMAKAAYEVLGKKIRKGVVVTKYGHSEGPIDDF 80 (414)
T ss_dssp CHHHHHHHHHHHHHHHHTTSHHHHHHTTHHHHCCCSEEEEEESTTHHHHHHHHHHHHGGGEEEEEEEEETTCCCSCCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCE
T ss_conf 95689999999999998419789999847757999889999818999999999997276677059995898677888874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~v~~a~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitL~dk~~~~~~Ll~sGA~I~eiN~VRk 160 (414)
T d2b8na1 81 EIYEAGHPVPDENTIKTTRRVLELVDQLNENDTVLFLLSGGGSSLFELPLEGVSLEEIQKLTSALLKSGASIEEINTVRK 160 (414)
T ss_dssp EEEEECSSSCCHHHHHHHHHHHHHHSSCCTTCEEEEEECTTHHHHSCCBCTTCCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 89978999998779999999999996489887689985088540011488999999999999999858998799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~lS~iKGG~La~~a~pa~v~sLilSDV~GDdl~~IaSGPTvpd~~t~~da~~il~~y~l~~p~~v~~~l~~~~~~~~~~v 240 (414)
T d2b8na1 161 HLSQVKGGRFAERVFPAKVVALVLSDVLGDRLDVIASGPAWPDSSTSEDALKVLEKYGIETSESVKRAILQETPKHLSNV 240 (414)
T ss_dssp TTBSSTTTHHHHHHTTSEEEEEEECCSTTCCTTTGGGCTTSCCCCCHHHHHHHHHHTTCCCCHHHHHHHTSCCCSCCSSE
T ss_pred HHHHCCCCHHHHHHCCCCEEEEEEECCCCCCCHHEECCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 98753662799971558568999805889981312048867899888999999998398777689986513578433454
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~ii~~n~~al~aa~~~a~~~G~~~~~~~~~l~Gea~~va~~~a~~~~~~~~~~~~~~~p~~li~GGEtTV~v~g~G~G 320 (414)
T d2b8na1 241 EIHLIGNVQKVCDEAKSLAKEKGFNAEIITTSLDCEAREAGRFIASIMKEVKFKDRPLKKPAALIFGGETVVHVKGNGIG 320 (414)
T ss_dssp EEEEEECHHHHHHHHHHHHHHTTCEEEEEEEEECSBHHHHHHHHHHHHHHHHHHCCSSCSSEEEEEEECCBCCCCSCCCC
T ss_pred CEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEECCCCCC
T ss_conf 13895689999999999998749943995342457689999999999999985278888974899756568870689998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 GRNqElaL~~a~~l~~~~~~~~ls~gTDG~DGptdaAGAivd~~t~~~~~~~gld~~~~L~~~DS~~f~~~~~~li~TGp 400 (414)
T d2b8na1 321 GRNQELALSAAIALEGIEGVILCSAGTDGTDGPTDAAGGIVDGSTAKTLKAMGEDPYQYLKNNDSYNALKKSGALLITGP 400 (414)
T ss_dssp CHHHHHHHHHHHHTTTCTTEEEEEEETTSCCSSSSCCEEEEETTHHHHHHHTTCCHHHHHHTTCHHHHHHHTTCEECCCC
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCHHHHHHCCCEECCCC
T ss_conf 64399999999983699996999975478878988775887662799999869999999987786999997699786199
Q ss_pred -------------E
Q ss_conf -------------8
Q 001511 467 -------------K 467 (1064)
Q Consensus 467 -------------~ 467 (1064)
-
T Consensus 401 TgTNV~Dl~i~li~ 414 (414)
T d2b8na1 401 TGTNVNDLIIGLIV 414 (414)
T ss_dssp CSCCCCEEEEEEEC
T ss_pred CCCCHHHHEEEEEC
T ss_conf 99656350777969
|
| >d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Gamma-glutamyl phosphate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=31259.19 Aligned_cols=1 Identities=0% Similarity=-0.925 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ee~~~a~~~A~~Af~~w~~~s~~eR~~iL~k~a~~l~~~~~eia~~~~~e~gk~~~~~~~e~~~~rl~~~~~~i~~~~~~ 80 (414)
T d1o20a_ 1 DELLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDEMIKA 80 (414)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHH
T ss_conf 97999999999999998629999999999999999997699999999999865886041177787874249999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~p~n~p~~~~~~~~~~alaaGN~vvlKps~~tp~~~~~~~~l~ 160 (414)
T d1o20a_ 81 CETVIGLKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIYESRPNVTVETTILALKSGNTILLRGGSDALNSNKAIVSAI 160 (414)
T ss_dssp HHHHHHSCCCTTCEEEEEECTTSCEEEEEEEECCCEEEECCSCTHHHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHCCCHHEECCCCHHCCCCCCCCCCCCHHHHHH
T ss_conf 99999865511233443344332101211221232012315717776514101001365201045600011002034677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~le~gGgn~~viv~~dAd~~~A~ 240 (414)
T d1o20a_ 161 REALKETEIPESSVEFIENTDRSLVLEMIRLREYLSLVIPRGGYGLISFVRDNATVPVLETGVGNCHIFVDESADLKKAV 240 (414)
T ss_dssp HHHHTTSSSCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCSSCBCCCCCCCEEEEECTTSCHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHCCCCCEECCCCCCCCEECCCCCCHHHHH
T ss_conf 76543212432124555543103444123334358699746079999876540344021046987871053335434456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~gq~C~a~~r~~V~~~i~d~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~FgPvl~v~~~ 320 (414)
T d1o20a_ 241 PVIINAKTQRPGTCNAAEKLLVHEKIAKEFLPVIVEELRKHGVEVRGCEKTREIVPDVVPATEDDWPTEYLDLIIAIKVV 320 (414)
T ss_dssp HHHHHHHHSCTTSTTSEEEEEEEHHHHHHHHHHHHHHHHHTTCEEEECHHHHHHSTTSEECCGGGTTCCCCSSEEEEEEE
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEECCCCCCCCEEEEEEEEEEEE
T ss_conf 68875441378643355522010889999999986899976986555465542110000002456770220037999994
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~dEAI~~aN~~~yGLsa~I~T~d~~~a~~~~~~i~~G~V~IN~~~~~~~~~~~g~g~~~G~~~~~~~~~G~~gl~~~t 400 (414)
T d1o20a_ 321 KNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDAAAVYVNASTRFTDGGQFGFGAEIGISTQRFHARGPVGLRELT 400 (414)
T ss_dssp SSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHCCSSEEEESSCGGGCSTTTTTCSCCSCEECSSSSCCEECCTGGGE
T ss_pred CCHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHC
T ss_conf 99999999985589998179995899999999983981499991898688888879978156249989987456799849
Q ss_pred -------------E
Q ss_conf -------------8
Q 001511 467 -------------K 467 (1064)
Q Consensus 467 -------------~ 467 (1064)
+
T Consensus 401 ~~K~vv~~~~~~~~ 414 (414)
T d1o20a_ 401 TYKFVVLGEYHVRE 414 (414)
T ss_dssp EEEEEEECSSCCCC
T ss_pred EEEEEEECCCCCCC
T ss_conf 57799987875378
|
| >d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: NADP-dependent isocitrate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=31255.49 Aligned_cols=1 Identities=0% Similarity=0.237 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~iV~l~GDE~tr~i~~~i~~~~~~~~~di~~~~~d~G~e~~~~tg~~l~~daieaik~~~v~lkG~~~tP~~ 80 (414)
T d1t0la_ 1 MSKKISGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDE 80 (414)
T ss_dssp CCCCEEEEEEEEEECCHHHHHHHHHHHHHTTTTTEEEEEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred CCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC
T ss_conf 98643368779956718999999999999707897752799826789998629967799999998669886678679873
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~s~n~~lR~~~~~~~~~rp~~~~~~~~~~~~~~~d~vvvREnteg~Y~g~e~~~~~~~~~~~~~~~~~ 160 (414)
T d1t0la_ 81 KRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSD 160 (414)
T ss_dssp HHHHHHTCSSCCCCHHHHHHHHHCCEEEEEECCCTTCCCSBTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCEEEEEEEECC
T ss_conf 33330012211010028889862765231126864899876787674367404554425436899779860689985046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~a~~~a~~~r~~v~~~~K~nv~~~t~glfr~~~~eva~~yp~~~~~ 240 (414)
T d1t0la_ 161 GTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE 240 (414)
T ss_dssp CSCCEEEEEEEECSCCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCEEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 65310000123467784268776205566788889999998469735875035614445288999999999876330134
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~v~~~~~~~Da~~~~~~~~p~fdVivt~NLfGDILSDl~a~l~GglGl~pSanig~~~~~~~fe~~hg~aP~hGsapd 320 (414)
T d1t0la_ 241 AQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQ 320 (414)
T ss_dssp HTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC
T ss_conf 32025666677789874148988728997674530566566562577431210115764334412355555543221001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 iAGk~iANP~A~ILS~amML~~lg~~d~~~~l~~~A~~Ie~Av~~~l~~G~~T~DlgG~~~~~~~~~~~~~lsT~ef~da 400 (414)
T d1t0la_ 321 KGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDK 400 (414)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHSCGGGCCGGGCCCHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 37766539099999999999985265643689999999999999999679988231877666665556676589999999
Q ss_pred -------------E
Q ss_conf -------------8
Q 001511 467 -------------K 467 (1064)
Q Consensus 467 -------------~ 467 (1064)
-
T Consensus 401 vi~~L~~~l~~~~~ 414 (414)
T d1t0la_ 401 LGENLKIKLAQAKL 414 (414)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999998865659
|
| >d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Stabilizer of iron transporter SufD family: Stabilizer of iron transporter SufD domain: Stabilizer of iron transporter SufD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31184.38 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~GlPt~k~E~WKyT~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf 80 (413)
T d1vh4a_ 1 NALQQWHHLFEAEGTKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDSVRLVF 80 (413)
T ss_dssp CHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCCTTSTTCTTCCCHHHHTSCEECCCCCCCHHHHHHHCCCCCSEEEEE
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCEEEEE
T ss_conf 97899999998628846299999999999729889987281479879974357765677668002000234568548999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 vnG~~~~~ls~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~LN~a~~~~g~~I~V~~~~~~~~PI~i~~~~~~~~~~~~~~ 160 (413)
T d1vh4a_ 81 VDGRYVPALSDATEGSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAGEEVNT 160 (413)
T ss_dssp ETTEECGGGSCCCTTSSCEEEEESCCTTCCCCSSCCHHHHHHHHHCSCEEEEEECTTCCCSSCEEEEEEECCCSSSCEEE
T ss_pred ECCEECHHCCCCCCCCCEEEECHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCEEEEEECCCCCCCCCC
T ss_conf 89998210056755577288515755404110110012332321025432674125357604541467503644344333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~r~~I~v~ena~v~iiE~~~~~~~~~~~~n~~~ei~l~~nA~l~~~~iq~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 240 (413)
T d1vh4a_ 161 AHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLL 240 (413)
T ss_dssp EEEEEEEEECTTCEEEEEEEEEESSSSCEEEEEEEEEEECTTCEEEEEEEECCCTTCEEEEEEEEEECTTCEEEEEEEEC
T ss_pred CCEEEEEEECCCCHHHHHHHCCCCCCCCCEECCEEEEEECCCCEEEEHHHHHHCCCCCCCCEEEEECCCCCCEEEEECCC
T ss_conf 11145653055202211121145544100002205899526642430334442233421220112003454146532000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 G~~~~r~~~~~~L~G~~a~~~~~g~~~~~~~q~~D~~~~i~H~~~~t~S~~~~k~vl~d~s~~vf~G~i~V~~~A~~t~a 320 (413)
T d1vh4a_ 241 GGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDG 320 (413)
T ss_dssp CCSEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEECTTCEEEEEEEEEECTTCTTEEE
T ss_pred CCCHHHCCCHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHH
T ss_conf 21100110000112000110011023466422433222320155542041343124666640488653035655225665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~q~~~~llls~~a~~~s~P~Lei~~ddv~~~Hgatvg~id~~~lfYL~sRGi~~~eA~~ll~~gF~~~~~~~~~~~~~~~ 400 (413)
T d1vh4a_ 321 QMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQ 400 (413)
T ss_dssp EEEEEEEECSTTCEEEEEEEEEECCSSEEEEEEEEEECCCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHCCCCCCEEEECCEEEEECCCEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 77665301567744875522899639816994000467898999999976999999999999998999998698299999
Q ss_pred ------------E
Q ss_conf ------------8
Q 001511 467 ------------K 467 (1064)
Q Consensus 467 ------------~ 467 (1064)
-
T Consensus 401 ~~~~~i~~~l~~~ 413 (413)
T d1vh4a_ 401 QVLARIGQRLPGG 413 (413)
T ss_dssp HHHHHHHTTSTTC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999872489
|
| >d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=31180.69 Aligned_cols=1 Identities=0% Similarity=-1.556 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~ltl~d~d~~gK~VllRvD~NvPi~~g~I~Dd~RI~~~lpTI~~L~~~gak~Vvl~SH~GRP~~~~~~d~~SL~pva~~ 80 (413)
T d1hdia_ 1 NKLTLDKLNVKGKRVVMRVDFNVPMAAAQITNNARIKAAVPSIKFCLDDGAKSVVLMSHLGRPDGSPMPDKYSLQPVAAE 80 (413)
T ss_dssp CBCBGGGSCCTTCEEEEECCCCCCBSSSSBSCCHHHHHHHHHHHHHHHTTCSEEEEECCCSCCCSSCCTTTSCSHHHHHH
T ss_pred CCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 98754102868998999931587744990897489999999999999879998999537889999977854587999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 L~~~L~~~V~f~~d~~g~~~~~~i~~l~~geilLLENvRF~~~E~~~~~~~~~~~~~~e~~n~~~f~~~La~l~DvyVND 160 (413)
T d1hdia_ 81 LKSALGKAVLFLKDCVGPAVEKACADPAAGSVILLENLRFHVEEEGKGKDASGNKAAGEPAKIKAFRASLSALGDVYVND 160 (413)
T ss_dssp HHHHHTSCCEECSCSSSHHHHHHHHSCCTTEEEECCCGGGSHHHHTEEECTTSCEEECCHHHHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHCCCEEEECCCCHHHHHHHHHCCCCCEEEEECCHHCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 99986886066056513556554320234317980221104211134432011000110243699999876328889953
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 AF~~aHR~haS~~gi~~~~~~~G~LmekEi~~L~~~l~~p~~P~vaIlGGaKvsdKi~vi~~L~~k~d~iiigGgmantf 240 (413)
T d1hdia_ 161 AFGTAHRAHSSMVGVNLPKKAGAFLMKKELNYFAAAAESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTF 240 (413)
T ss_dssp CGGGTTCCCHHHHCCCCSCEEECHHHHHHHHHHHHHHTSCCSSEEEEECCSCSGGGHHHHHHHHTTCSEEEECGGGHHHH
T ss_pred CHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCEEEECCHHHHHH
T ss_conf 42111125762220135642116899999999876540788761699842554338999998875310154035468999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 L~a~~g~~iG~sl~e~~~~~~~~~~~~~~~~~~~~i~lp~d~~~~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~ 320 (413)
T d1hdia_ 241 LKVLNNMEIGTSLFDEAGKKIVKNLMSKAAANGVKITLPVDFVTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAKY 320 (413)
T ss_dssp HHHHHCCCBTTCCCCTTGGGTHHHHHHHHHHHTCEEECCCEEEEESSSSTTCCEEEEETTTCBCTTCEEEEECHHHHHHH
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHH
T ss_conf 99715974563340322004677777789871984344541354124566555455442113588764431530236788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~I~~aktI~wNGP~GvfE~~~F~~GT~~i~~~ia~~~~~~a~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~L~~L~ 400 (413)
T d1hdia_ 321 SEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDNVSHVSTGGGASLELLE 400 (413)
T ss_dssp HHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHTTCEEEECTTHHHHHHHHTTCTTTSSEECSCHHHHHHHHT
T ss_pred HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHHC
T ss_conf 88761587799988834566761538999999999985148998999377999999974986798479278799999987
Q ss_pred ------------E
Q ss_conf ------------8
Q 001511 467 ------------K 467 (1064)
Q Consensus 467 ------------~ 467 (1064)
-
T Consensus 401 G~~LPgi~aL~~~ 413 (413)
T d1hdia_ 401 GKVLPGVDALSNV 413 (413)
T ss_dssp TCCCHHHHTSCBC
T ss_pred CCCCCHHHHHHCC
T ss_conf 9996246352049
|
| >d2qgma1 c.150.1.3 (A:33-445) Succinoglycan biosynthesis protein BC3205 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: EreA/ChaN-like superfamily: EreA/ChaN-like family: EreA-like domain: Succinoglycan biosynthesis protein BC3205 species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=0 Score=31179.65 Aligned_cols=1 Identities=100% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~i~~~a~pl~~~d~~~~~~DL~~L~~~v~dariV~LGEatHGt~Ef~~~r~~l~r~Lvee~Gf~~vA~E 80 (413)
T d2qgma1 1 SGQSVQKNIVKSIQSQANPLKTIEPSKPFEDLKPLKKMIGNAQYVGLGENTHGSSEIFTMKFRLVKYLVTEMGFTNFAME 80 (413)
T ss_dssp CCSSHHHHHHHHHHHHCEECCCCCTTSCCGGGHHHHHHHTTCSEEEECCSSSCBHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 98427789999999846558778989876789999986479749998468667079999999999999997599789992
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~d~~~~~~vn~yV~~g~g~~~~~~~~~w~~~e~~~lv~WlR~~N~~~~~~~~v~f~G~D~~~~~~~s~~~v~~yl~~~~p 160 (413)
T d2qgma1 81 EDWGNGLKLNEYIQTGKGNPREFLKLLYPTDEIIAMIEWMKDYNADPSNKKKIQFIGLDLKALDQGSFNKVIDYVRLHRP 160 (413)
T ss_dssp EEHHHHHHHHHHHHHCCSCGGGTSCTTSCBHHHHHHHHHHHHHHHCTTCCSCCEEEEEECSCCCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCH
T ss_conf 69588999999986388787887787525177999999999970458978842699744465535469999999986196
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~ 240 (413)
T d2qgma1 161 DLLAEVEENYKELSSFTGSIQEYMKLTPKLKEKFKANAERVARLLKDENEQANTEIIPSEYIWAKATASAIEKFTTMLLP 240 (413)
T ss_dssp TSHHHHHHHHHTGGGSCSCHHHHTTSCHHHHHHHHHHHHHHHHHTSCC-----------CHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 78999999974603123478999775176788899999999999997676505432344899999999999999999706
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~RD~~Maenl~~~~~~~~~KiivwAHN~Hi~~~~~~~~~~~~~~G~~L~e~~G~~y~~IG~~~~~G~v~a~~ 320 (413)
T d2qgma1 241 NDYPSIIKLHEQYLADHAMWAQETFGGKTMVWAHNIHIAKGIIDEKLYPYVAGQFLKERLDNNYVTIGSTTTEGNFTLYS 320 (413)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHCSCEEEECCHHHHCSSCSCTTTCSSCHHHHHHHHHGGGEEEEEEEEEEEEEEESC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCEEECCC
T ss_conf 87401377899999999999974789978999554110757565433666589999998488469999873466041257
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~~~~~~~~p~~~~s~e~~l~~~~~~~~~ld~r~~~~~~~~~l~~~r~~r~iG~~y~P~~~~y~~~~~~~~fDa 400 (413)
T d2qgma1 321 EYNPSTGGKITTDTIPQDVKSFNYTLGKVPYKMFLLDNRHLKGQAEKWVKAKRPLLSIGGQILPNSSVYFDTSLLEQFDI 400 (413)
T ss_dssp CC-----CCCEEEECCCCTTSHHHHHHHSSCSEEEEEGGGCCHHHHHHHHSEEEEECCCSCC-----CEEEEEHHHHCSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCHHCCCEEEECCCCCCCCCCCHHHHCCE
T ss_conf 77875566303678999952699997135877467552004535678883711211310244588764446895997978
Q ss_pred ------------E
Q ss_conf ------------8
Q 001511 467 ------------K 467 (1064)
Q Consensus 467 ------------~ 467 (1064)
+
T Consensus 401 li~i~~ttPa~~~ 413 (413)
T d2qgma1 401 IFHIRKTSPSHIK 413 (413)
T ss_dssp EEEEEEECBCCBC
T ss_pred EEEECCCCCCCCC
T ss_conf 9997146703129
|
| >d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: NADP-dependent isocitrate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=31179.42 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~ki~v~~pIv~l~GDeit~~~~~~i~~~l~~~~~di~~~~~d~G~~~~~~tg~~l~~eaiea~k~~~aiLkGa~~tP~ 80 (413)
T d1lwda_ 1 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPD 80 (413)
T ss_dssp CCCCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCC
T ss_pred CCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCC
T ss_conf 99750305777995486379999999999970678886279970788999874996769999999975977788867997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~s~n~~lR~~ldl~an~RP~~~~~~~~~~~~~~~d~VivREnteg~Y~g~e~~~~~~~~~~i~~~~~ 160 (413)
T d1lwda_ 81 EARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPK 160 (413)
T ss_dssp HHHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEET
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCEECCCCCCCEEEEECC
T ss_conf 32235444432210001568976387458721002578876788887727752254443503423226766320577405
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ria~~af~~a~~~~~~vt~v~K~nvl~~~~glf~~~~~eva~~~p~~~~~ 240 (413)
T d1lwda_ 161 DGSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFD 240 (413)
T ss_dssp TCCCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 66542233200256652000001332025678999999997159605775046356600479999999999874003564
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~I~~~~~~vd~~~~~lv~~p~~~Vivt~NlfGDIlSDlaa~l~GglGl~pSanig~~~~~~~fe~~HGsap~~ag~~~ 320 (413)
T d1lwda_ 241 KYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQ 320 (413)
T ss_dssp HTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHH
T ss_pred CCEEEEEHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHH
T ss_conf 23799861455555565228988739997563405676677874389777764324787554333346566000000121
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 iagk~iANP~a~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~~T~DlgG~~~~~~~~~~~~~~~sT~ef~d 400 (413)
T d1lwda_ 321 KGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLD 400 (413)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHCTTSCCBTTTBCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 17765659599999999999973454444579999999999999999779988465887666655555677638999999
Q ss_pred ------------E
Q ss_conf ------------8
Q 001511 467 ------------K 467 (1064)
Q Consensus 467 ------------~ 467 (1064)
+
T Consensus 401 aV~~~L~~~l~~~ 413 (413)
T d1lwda_ 401 TIKSNLDRALGRQ 413 (413)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999987529
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=100.00 E-value=0 Score=31184.50 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~f~~~~~~~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~l~~~~~rp~LVVt~n~~~A~qL~~dL~~~l 80 (413)
T d1t5la1 1 EGRFQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSELKEFF 80 (413)
T ss_dssp CCCCCCCCSSCCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf 98427705889999888999999999865998589967787489999999999739998999489999999999999874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~vIVv~~~a~~~~l~~p~~~~~~~l~l 160 (413)
T d1t5la1 81 PHNAVEYFVSYYDYAQPEAYVPQTDTYIEKDAKINDEIDKLRHSATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSL 160 (413)
T ss_dssp TTSEEEEECCGGGTCCCSEEETTTTEEECCCSCCCHHHHHHHHHHHHHHHHCSCEEEEECGGGGSCCCCHHHHHHTSEEE
T ss_pred CCCCEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHEEEEE
T ss_conf 87745432421211442014743443322345677788888766655203567714653000253257857843105898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~G~~i~~~~l~~~L~~~GY~r~~~V~~~GeFsvRG~IiDIfp~~~~e~PvRIEffgDeIesIr~Fd~~tQrs~~~~~~v 240 (413)
T d1t5la1 161 RVGMEIERNALLRRLVDIQYDRNDIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHV 240 (413)
T ss_dssp ETTCSCCHHHHHHHHHHTTCEECSSSCCTTEEEECSSEEEECCTTCSSEEEEEEESSSSEEEEEEEETTTCCBCCCCSEE
T ss_pred ECCCHHHHHHHHHHHHHHCCCCCCEEEECCEEEEECCHHHHCCCCCCCCCCCEEEECCHHEEEECCCCCCCCCCCCCCEE
T ss_conf 66862528899999998435103100000205775351642478533564030650301103551135457211243179
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~I~Pa~e~i~~~~~~~~a~~~i~~el~~~~~~~~~~~~~~ea~rl~~~~~~d~e~l~e~~~~~gie~y~~~~~~r~~~~~ 320 (413)
T d1t5la1 241 AIFPASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLALRPPGST 320 (413)
T ss_dssp EECCSSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCCTTGGGGHHHHHTCCTTCC
T ss_pred EEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 96346036269999999999999999999999987785889999998767579999852764444555443204666688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~tLlDY~~~d~l~~iDE~~~~~~q~~~~~~~~~~r~~~l~e~G~~LP~a~dn~pL~~ee~~~~~~~~i~vsatP~~~e~ 400 (413)
T d1t5la1 321 PYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDHGFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYEL 400 (413)
T ss_dssp CCCHHHHSCTTCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHHTSSCGGGGGSSCCCHHHHHHHCSEEEEEESSCCHHHH
T ss_pred CCHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCHHH
T ss_conf 73244104787089993626569999999988899899888651657556557976889999864987999579970557
Q ss_pred ------------E
Q ss_conf ------------8
Q 001511 467 ------------K 467 (1064)
Q Consensus 467 ------------~ 467 (1064)
-
T Consensus 401 ~~~~~~v~q~irp 413 (413)
T d1t5la1 401 EHSPGVVEQIIRP 413 (413)
T ss_dssp HHSSSCEEECCCT
T ss_pred HHCCCEEEEEECC
T ss_conf 7468846886286
|
| >d1zjca1 e.60.1.1 (A:3-415) Aminopeptidase S, AMPS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Thermophilic metalloprotease-like superfamily: Thermophilic metalloprotease-like family: Thermophilic metalloprotease (M29) domain: Aminopeptidase S, AMPS species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=31177.43 Aligned_cols=1 Identities=0% Similarity=-2.089 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~f~~~L~k~A~llV~~~l~vqkGe~VlI~a~~~~~~lvral~~~a~~aGA~pV~v~~~d~~i~r~~~~~~~~e~l~~~e~ 80 (413)
T d1zjca1 1 NYKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVVYSDPTLKRLKFENESVEHFANHEI 80 (413)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCTTCCEEEEEETTCHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHHHHSCHHHHHHTSS
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCHHHHCCCCC
T ss_conf 97899999999999983068999989999567439999999999998699648995087899999871899668353202
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~a~i~i~~~~p~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W~i~~~Pt~a~A~~a~~~l 160 (413)
T d1zjca1 81 KSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKLQAFQQQNARAFKGYMESVQKNQFPWVVAAFPSKAWAKRVYPEL 160 (413)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEECCCTTTTTTSCHHHHHHHHHHHHHHTHHHHHHHHTTCSCEEEEECCCHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCC
T ss_conf 56679999999865884899726895242037989999999999999899999986476566999568767776645899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~e~~~~~~d~if~a~~lD~~dpv~~w~~~~~~l~~~~~~L~~~~~~~~~~~~~gTDLt~~l~~~~~~~~~~~~~~~~~ 240 (413)
T d1zjca1 161 SVEEAYIKFIDEVFDIVRIDGNDPVENWRQHIANLSVYAQKLQQKNYHALHYVSEGTDLTVGLAKNHIWEDATSYVNGKE 240 (413)
T ss_dssp CHHHHHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEETTEEEEEEECTTBCCBCSEEEGGGTS
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCEEEECCCCCCCCCC
T ss_conf 87999999999999750788051799999999999999999854072479943898407999358737716875236777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~NlP~gEvft~P~~~~~~G~i~~~~~~~~~G~~~~~i~l~f~~G~vv~~~~~~~~~~l~~~l~~d~~a~~~gE~~i 320 (413)
T d1zjca1 241 QAFIANIPTEEVFTAPDRNRVDGYVTNKLPLSYNGTIIDQFKLMFKDGEIIDFSAEKGEAVLKDLINTDEGSRRLGEVAL 320 (413)
T ss_dssp SEEESBSSCCCEEECEEEEEEEEEEECSSCEEETTEEEEEEEEEEETTEEEEEEEEESHHHHHHHHTSSGGGGSEEEEEE
T ss_pred CCCCCCCCCCCEEEEECCCCEEEEEEECEECCCCCEECCCCEEEEECCEEEEEECCCHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 76648899800686131586137999782526298832481899989999999747659999876404866536767753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 g~n~~~~~~~~~~~~~~L~DEkgt~H~a~G~~Y~~~~~~~~~~~~~~~~~~G~n~s~~H~D~~i~~~~~~i~gv~~dG~~ 400 (413)
T d1zjca1 321 VPDDSPISNRNTIFYNTLFDENAACHLAIGSAYAFNIQGGTEMTVEEKIASGLNDSNVHVDFMIGSSDLTIYGIFEDGSK 400 (413)
T ss_dssp CCSSSTTGGGCCCCSSHHHHTTTSCEEEEECCCGGGBTTGGGCCHHHHHHHTCCCCSCEEEEECCCTTCEEEEECTTSCE
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCHHHCCCCCCCCHHHHHCCCCCCCCEEEEECCCCCCEEEEEEEECCCE
T ss_conf 16886543435442451587489744667756421113665578145401798676457876347871568999818978
Q ss_pred ------------E
Q ss_conf ------------8
Q 001511 467 ------------K 467 (1064)
Q Consensus 467 ------------~ 467 (1064)
-
T Consensus 401 ~~I~~~G~f~~~~ 413 (413)
T d1zjca1 401 ELVFENGNWASTF 413 (413)
T ss_dssp EEEEETTEECTTC
T ss_pred EEEEECCEECCCC
T ss_conf 8999899976769
|
| >d1a0tp_ f.4.3.2 (P:) Sucrose-specific porin {Enterobacterium (Salmonella typhimurium) [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Transmembrane beta-barrels superfamily: Porins family: Maltoporin-like domain: Sucrose-specific porin species: Enterobacterium (Salmonella typhimurium) [TaxId: 90371]
Probab=100.00 E-value=0 Score=31172.83 Aligned_cols=1 Identities=0% Similarity=-1.789 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~GfeFhGY~RsG~g~s~~g~~~~~~~~~~~~~~~~g~~gRLGNE~d~y~El~l~~~~~~~~g~~~~~~~~~a~~~~~~~d 80 (413)
T d1a0tp_ 1 SGFEFHGYARSGVIMNDSGASTKSGAYITPAGETGGAIGRLGNQADTYVEMNLEHKQTLDNGATTRFKVMVADGQTSYND 80 (413)
T ss_dssp CCEEEEEEEEEECCEETTSSCCCCCTTCSGGGGGTCCCCCTTCCCSEEEEEEEEEEEECTTSCEEEEEEEEEEEECCCSS
T ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCC
T ss_conf 95168527785734847898654563216565666565424664351798883457781599599999997115655578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~q~yve~~nl~~f~~~~~~a~~WaGkR~y~r~~dIhi~D~~y~~~sG~GaGieni~lG~g~~~~~~~~~~ 160 (413)
T d1a0tp_ 81 WTASTSDLNVRQAFVELGNLPTFAGPFKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDVKWNDGLRSNFSLYGR 160 (413)
T ss_dssp CCGGGCCCEEEEEEEEEESCTTCCGGGTTCEEEEEEEECTTCEEEGGGTEEEEBCEEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred CCCCCCCCHHEEEEHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCEECEEEEECCCCCEEEEEEEEC
T ss_conf 75666530110303464586434677998639744420366567542310468658857564721037884688999942
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~~~~~~~~~~~~~G~~~G~nk~~ 240 (413)
T d1a0tp_ 161 NFGDIDDSSNSVQNYILTMNHFAGPLQMMVSGLRAKDNDERKDSNGNLAKGDAANTGVHALLGLHNDSFYGLRDGSSKTA 240 (413)
T ss_dssp EEECTTCGGGEEEEEEEEEEEEETTEEEEEEEEECTTGGGCBCSSSSBSCSSCCSEEEEEEEEEEEEESTTSSEEEEEEE
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCEEEEEEEECCCEECCCCCEEEEH
T ss_conf 56776667875111687531157379999964303773443215654346764465308999996142000358635151
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 lQyg~G~~a~~~~~~~~~~~~~~~~s~Rl~~~G~~~~~~~~~~~~~~~y~~~~d~~~~~~~~~~~s~gvRP~y~~~~~~~ 320 (413)
T d1a0tp_ 241 LLYGHGLGAEVKGIGSDGALRPGADTWRIASYGTTPLSENWSVAPAMLAQRSKDRYADGDSYQWATFNLRLIQAINQNFA 320 (413)
T ss_dssp EEEEEETTCSCSBTTCCTTCCTTCEEEEEEEEEEEESSSSEEEEEEEEEEEEESSSSTTCEEEEEEEEEEEEEESSSSEE
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEECCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCEE
T ss_conf 62375715577565787862799508999986644135876776668999851667789970799999888589668689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~E~gy~~~~~~~~g~~~~~~~~~~~~K~TlA~~~~~g~~~~fwsRPeiR~faTY~~w~~~~~~~~~~~~~~~~~~~~~ 400 (413)
T d1a0tp_ 321 LAYEGSYQYMDLKPEGYNDRQAVNGSFYKLTFAPTFKVGSIGDFFSRPEIRFYTSWMDWSKKLNNYASDDALGSDGFNSG 400 (413)
T ss_dssp EEEEEEEEEEEEECTTGGGCCCEEEEEEEEEEEEEEESSCTTCTTCCCEEEEEEEEEEECGGGGGSCSSSSTTBTTBCSS
T ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCHHHCCCCCCCCCCCCCCCCC
T ss_conf 99998886640344675366666783589999763132897876779789999999805412200224565454677888
Q ss_pred ------------E
Q ss_conf ------------8
Q 001511 467 ------------K 467 (1064)
Q Consensus 467 ------------~ 467 (1064)
=
T Consensus 401 ~~~~fGvQ~E~Ww 413 (413)
T d1a0tp_ 401 GEWSFGVQMETWF 413 (413)
T ss_dssp CEEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEC
T ss_conf 8789999998769
|
| >d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Bacterial glucoamylase C-terminal domain-like domain: Glucodextranase, domain A species: Arthrobacter globiformis [TaxId: 1665]
Probab=100.00 E-value=0 Score=31174.26 Aligned_cols=1 Identities=0% Similarity=-1.124 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~S~l~lk~~~~~~~~GaiiAapt~~~pe~~~~~~n~d~Yry~W~RDaa~~~~al~~~G~~~~a~~~ 80 (413)
T d1ulva1 1 PATSLTGALRTQYDVSLMTVKSHEDKTFPGAFIASLTIPWGQAASAETHREGYHAVWARDMYQSVTALLAAGDEEAAARG 80 (413)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBCSSCCCTTCSBCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 98657889999999999999973468999848875888887666775689871166180599999999986998999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~l~~~~~~~~G~~~~~y~~dg~~~~~~~Q~D~~g~~l~~~~~~~~~~~~~~~~~i~~a~~~l~~~~~~~~~~lWEe~~ 160 (413)
T d1ulva1 81 VEWLFTYQQQPDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGRTDAGFYRNELKPAADYLVAAGPKTPQERWEETG 160 (413)
T ss_dssp HHHHHHHTCCTTSCCCSCBCTTSCBCCCCCBTHHHHHHHHHHHHHTCCCHHHHHHTHHHHHHHHHHHCSCBSBCTTSSCC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99999985079996056546687767776763038999999999853001678999999999999738898745454678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 g~~~~T~~~~~~aL~~aa~la~~~gd~~~a~~~~~~A~~i~~~i~~~~~~~~~~~~~~~y~~r~~~~~~~~~~~~~~~~~ 240 (413)
T d1ulva1 161 GYSTSTLASQIAALAAAADIAGKNGDAGSAAVYRATADEWQRSTEKWMFTTNGPVGDGKYYLRISATGNPNDGATRDWGN 240 (413)
T ss_dssp BEEHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTHHHHHEESSCSSTTSCEECSEESSSCTTSCCEEECST
T ss_pred CCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
T ss_conf 85431189999999999999998398167889999999999999996018655623321011036666654320000123
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~vDas~l~~~~~g~~~~~d~r~~~t~~~i~~~L~~~~~~g~~~~Ry~~D~y~~~~~g~~~~~~~i~t~W~~ 320 (413)
T d1ulva1 241 GAGVHPENAVLDGGFLEFVRLGVKAPADPYVADSLAETDASISQETPGGRMWHRYTYDGYGEKADGSPWDGTGIGRLWPL 320 (413)
T ss_dssp TCCEEEGGGCCBGGGGHHHHTTSSCTTCHHHHHHHHHHHHHHEEEETTEEEECSBTTCCCSCCTTSCCCSSCCCCCBCTH
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 45666677765788763112178798887899999999998546778777420024667657788887633112789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~a~~~~g~~~~A~~ll~~l~~~~~~~G~LpEqv~~~~~~~~~~~~~~~~~~sa~PlaWS~A~~i~l~~~l~~g~~~ 400 (413)
T d1ulva1 321 LSGERGEYALANGQDALPYLETMHSAANAGYMIPEQVWDRDEPTSYGHELGRSTGSASPLSWAMAQYVRLAAGVKAGAPV 400 (413)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHTSCTTCCCCSCBBCCSSCCSSCCCBTSBCSSCBSCHHHHHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999998648788999999999976687886563016788830025778999888776374789999999998669976
Q ss_pred ------------E
Q ss_conf ------------8
Q 001511 467 ------------K 467 (1064)
Q Consensus 467 ------------~ 467 (1064)
-
T Consensus 401 ~~~~~~~~~~~~~ 413 (413)
T d1ulva1 401 ETPQNVAARYAAG 413 (413)
T ss_dssp SSCHHHHHHHTSS
T ss_pred CCCHHHHHHHHCC
T ss_conf 6762899874149
|
| >d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Amidase signature (AS) enzymes superfamily: Amidase signature (AS) enzymes family: Amidase signature (AS) enzymes domain: Malonamidase E2 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=100.00 E-value=0 Score=31106.50 Aligned_cols=1 Identities=100% Similarity=1.998 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~ls~~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~lna~~~~~~~~~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~ 80 (412)
T d1ocka_ 1 MISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYR 80 (412)
T ss_dssp CCCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCCCCSSSTTTTCEEEEETTBCCSSSCCCTTSGGGT
T ss_pred CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHH
T ss_conf 98789999999869998999999999999976961598174439860766798688879987661778974166486661
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~a~~V~~L~~aGaii~gkt~~~e~~~~~~~~~~np~~~~~~~GgSSgG~aaava~g~~~~a~GsDtgGSiR~PA 160 (412)
T d1ocka_ 81 GWQPRSDAPVVMMLKRAGATIIGKTTTTAFASRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPA 160 (412)
T ss_dssp TCCCSSCCHHHHHHHHTTCEEEEEECCCGGGSSCCCSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHH
T ss_pred CCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH
T ss_conf 78875301477652012433000001666502566543334466666777678761111034566557654023441015
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 a~cGi~GlKPT~G~v~~~g~~~~s~~~dt~Gp~arsv~Dl~~~l~~i~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 240 (412)
T d1ocka_ 161 AYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAE 240 (412)
T ss_dssp HHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCCCCSSCEEEECCCGGGCCCCHHHH
T ss_pred HHHCCHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 55302101344100123344443201111223445188999999864288721244776444334432323345106777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~a~~~L~~~G~~v~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 320 (412)
T d1ocka_ 241 QGLQAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARR 320 (412)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHSGGGSCHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 78888888888764023223453102333455541125789887777640242321245544333210122210001124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~r~~~~~~~~~~f~~~D~ll~Pt~p~~ap~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQiig~~~~D~~lL 400 (412)
T d1ocka_ 321 IGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTGDPRYNRLWTLMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHAL 400 (412)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCCCCCTTTHHHHHHCCCEEEEEEEEETTEEEEEEEEECTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCHHHHH
T ss_conf 67899999999982799999689988776300045687577599999789849983668999607688889999899999
Q ss_pred -----------E
Q ss_conf -----------8
Q 001511 467 -----------K 467 (1064)
Q Consensus 467 -----------~ 467 (1064)
+
T Consensus 401 ~~A~~~E~alg~ 412 (412)
T d1ocka_ 401 ATAWFLEDALAK 412 (412)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998583
|
| >d1yzya1 c.146.1.1 (A:1-412) Hypothetical protein HI1011 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: YgbK-like superfamily: YgbK-like family: YgbK-like domain: Hypothetical protein HI1011 species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=0 Score=31103.25 Aligned_cols=1 Identities=100% Similarity=0.636 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 i~iIADDlTGA~dt~~~~~~~G~~t~~~~~~~~~~~~~~~dvv~i~t~SR~l~~~eA~~~v~~~~~~l~~~~~~~~~~Kv 80 (412)
T d1yzya1 1 LGVIADDFTGASDIASFLVENGLSTVQMNGVPTQSLNSKVDAIVISLKSRSNPVNEAIEQSLRAYQWLKENGCTQFYFKY 80 (412)
T ss_dssp CEEEESSHHHHHHHHHHHHTTTCCEEEEESCCSSCCCSCCSEEEEECCCSSSCHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 96895273528999999998799099971788500057899899985778999999999999999999863897158999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~s~~DStlRGnig~Ei~a~~~~~~~~~~~v~PA~P~~gR~t~~G~~~v~g~pl~~t~~a~dP~tP~~~s~l~~ll~~qs~ 160 (412)
T d1yzya1 81 CSTFDSTAKGNIGPVTDALLDELNEDFTVITPALPVNGRTIFNGYLFVGDVLLSESGMKNHPITPMVDANLMRLMDAQAK 160 (412)
T ss_dssp CTTCCCCTTCTHHHHHHHHHHHHTCCCEEECCCBGGGTEEEETTEEEETTEEGGGSGGGGCSSSCCCCCBHHHHHHHHCS
T ss_pred EECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCEEEECCEECCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 73133777678589999999763997699946756577699998999898875676100288989775027777555237
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~v~~i~~~~v~~~~~~~~~~l~~~~~~~~~~vv~Da~t~~dL~~ia~a~~~~~~~~GsaGla~~l~~~~~~~~~~~~~~ 240 (412)
T d1yzya1 161 GKTGLVAYADVIKGASRVQECFAELKAQGYRYAVVDAVDNSQLEVLAEAVADFKLVTGGSGLGAYMAARLSGGKKGTNAF 240 (412)
T ss_dssp SCEEEECHHHHTTCHHHHHHHHHHHHHTTCSEEEECBSSTHHHHHHHHHTTTCSEEEESHHHHHHHHHHHHTSCCGGGCC
T ss_pred CCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCCCCC
T ss_conf 85354219988645067999999876179866998369889999999973288079954407778887512466654345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~Lvv~GS~s~~T~~Ql~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 320 (412)
T d1yzya1 241 TPTKGKTVVLSGSCSVMTNKQVEKYREKAPHFQLDVEQAIHNENYIEQLYQWVIANLDSEFAPMVYATVPPDALKAIQHQ 320 (412)
T ss_dssp CCCSCCEEEEECCCSHHHHHHHHHHTTTSCEEECCHHHHHHCTTHHHHHHHHHHTTTTSSSCCEEECCCCHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
T ss_conf 78888679998267488999999998509859963899617817999999999998736997588843764555566543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~~i~~~l~~~~~~l~~~~~~~lv~tGGdTa~av~~~Lg~~~l~~~~ei~pGvp~~~~~~~gl~ivtK~G~fG~ 400 (412)
T d1yzya1 321 FGVDQASHAIENTFAKLAAKLKQYGVTNFITAGGETSSIVVQELGFTGFHIGKQIAPGVPWLKAVEEDIFLALKSGNFGK 400 (412)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEESHHHHHHHHHHHTCCEEEEEEEEETTEEEEEESSSSCEEEEECTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCC
T ss_conf 01677999999999999999875587869992639999999975998666757426982079766998079997898898
Q ss_pred -----------E
Q ss_conf -----------8
Q 001511 467 -----------K 467 (1064)
Q Consensus 467 -----------~ 467 (1064)
-
T Consensus 401 ~D~~~~a~~~~~ 412 (412)
T d1yzya1 401 EDFFEYAQGMFL 412 (412)
T ss_dssp TTHHHHHHHTTC
T ss_pred HHHHHHHHHHHC
T ss_conf 569999999759
|
| >d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Arginine deiminase domain: Arginine deiminase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=0 Score=31101.95 Aligned_cols=1 Identities=0% Similarity=-0.260 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~v~sE~g~Lk~Viv~~Pg~e~~~l~p~~~~~~lf~~~~~~~~a~~eh~~f~~~L~~~Gv~V~~l~~~l~e~~~~~~~ 80 (412)
T d1rxxa_ 1 TKLGVHSEAGKLRKVMVCSPGLAHQRLTPSNCDELLFDDVIWVNQAKRDHFDFVTKMRERGIDVLEMHNLLTETIQNPEA 80 (412)
T ss_dssp CCSEECCSSSCEEEEEECCCCHHHHTCCTTTTGGGTCSCCCCHHHHHHHHHHHHHHHHTTTCEEEEHHHHHHHHTTSHHH
T ss_pred CCCCCCCCCCCCEEEEECCCCHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCHHH
T ss_conf 97753777100007896698388773690015664367788999999999999999997798899705768877349588
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plpn~~F~R 160 (412)
T d1rxxa_ 81 LKWILDRKITADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGHSSFLLPPLPNTQFTR 160 (412)
T ss_dssp HHHHHHHHSCHHHHCTTTHHHHHHHHHTSCHHHHHHHHHHCEEGGGSCSCHHHHHHHHHHHHSCCCCEEECCCGGGGCTT
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHEECC
T ss_conf 99999875032334655899999998708989999998626421003444332112211000356533578862121315
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 D~~~~i~~gvii~~m~~~~R~~E~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~EGGDvl~~g~~~l~~g~s~RTn 240 (412)
T d1rxxa_ 161 DTTCWIYGGVTLNPMYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDKDHGSSTLEGGDVMPIGNGVVLIGMGERSS 240 (412)
T ss_dssp TTEEECSSEEEECCCSSGGGHHHHHHHHHHHHHCHHHHTSCCEEEECCTTSCCTTCCCCGGGEEEEETTEEEEEESSSSC
T ss_pred CCCCEECCCEEECCCCCHHHCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCC
T ss_conf 77534669789668997365436799999998580220576310147655547766042560899679689999431050
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~gi~~L~~~l~~~~~~~~v~~~~~p~~~~~~HLDt~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (412)
T d1rxxa_ 241 RQAIGQVAQSLFAKGAAERVIVAGLPKSRAAMHLDTVFSFCDRDLVTVFPEVVKEIVPFSLRPDPSSPYGMNIRREEKTF 320 (412)
T ss_dssp HHHHHHHHHHHHHTTSCSEEEEEECCC--CCCCHHHHEEEEETTEEEECHHHHTTCEEEEEEECTTSTTSEEEEECSSCH
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEECCCEEEECCCCEEEEEHHHCCCCCCEEEECCCCCCCCCEEECCCCCH
T ss_conf 99999999986642806775502678765420025427751798599831242754430442156655551010254317
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~l~~~l~~~~~~~i~~~~d~~~~~~e~~~~~~N~L~l~p~~Vi~~~~~~~~~~~L~~~Gi~vi~v~~~el~~~gGg~h 400 (412)
T d1rxxa_ 321 LEVVAESLGLKKLRVVETGGNSFAAEREQWDDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGH 400 (412)
T ss_dssp HHHHHHHTTCSCCEEEECCCSCC--CCSSCCCCCCCEEEETTEEEEETTCHHHHHHHHHTTCEEEEECCTTTTSSSCCTT
T ss_pred HHHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCEEEEECCCEEEEECCCHHHHHHHHHCCCEEEEECHHHHHCCCCCCE
T ss_conf 89999971898707955798525555666406520899679989984889999999997899899966567413798867
Q ss_pred -----------E
Q ss_conf -----------8
Q 001511 467 -----------K 467 (1064)
Q Consensus 467 -----------~ 467 (1064)
+
T Consensus 401 C~T~pl~Re~i~ 412 (412)
T d1rxxa_ 401 CMTCPIVRDPID 412 (412)
T ss_dssp TTCEEEEECCCC
T ss_pred ECCCCCCCCCCC
T ss_conf 887034627999
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=0 Score=31101.66 Aligned_cols=1 Identities=0% Similarity=-0.825 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~ 80 (412)
T d1yaaa_ 1 SATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTS 80 (412)
T ss_dssp CTTTTTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHH
T ss_pred CCCHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 94734458747998699999998467898968830677748889988868999999999728654777899877899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~ 160 (412)
T d1yaaa_ 81 NAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKS 160 (412)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTE
T ss_pred HHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHCCCCEECCCCCCCCCCC
T ss_conf 99999723447665666526871442046799999987503899877246435740679999859910105633334344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~ 240 (412)
T d1yaaa_ 161 LDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKL 240 (412)
T ss_dssp ECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHT
T ss_pred CCCHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEEECCCCCCCCCHHHHHHHHHCC
T ss_conf 21101000124578751799944899985445899999999866114887974520010000588656524432223212
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~ 320 (412)
T d1yaaa_ 241 STVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWH 320 (412)
T ss_dssp TTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf 46887599982577645676760799975056666788888888889999987736797688999999706847789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~ls~e~~~~L~~e~~V~~~~g~Ris~~g~~~~~i~~l 400 (412)
T d1yaaa_ 321 KDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYV 400 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHH
T ss_conf 89999999999999999999997289888753689952798229699999999996788878988798515988889999
Q ss_pred -----------E
Q ss_conf -----------8
Q 001511 467 -----------K 467 (1064)
Q Consensus 467 -----------~ 467 (1064)
.
T Consensus 401 ~~ai~~v~k~~~ 412 (412)
T d1yaaa_ 401 AKAIDEVVRFYA 412 (412)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHC
T ss_conf 999999998509
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=0 Score=31101.42 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~s~~~~~~~~~~~~i~~l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lr 80 (412)
T d1ajsa_ 1 APPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFR 80 (412)
T ss_dssp CCCCTTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHH
T ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 99584440876899769999999836899996884178875888999886899999999973787688889977789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 eaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~ 160 (412)
T d1ajsa_ 81 TCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRY 160 (412)
T ss_dssp HHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEEC
T ss_pred HHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEECC
T ss_conf 99999985157843245662230365305678899999988764047998989994786331689999859927874223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~ 240 (412)
T d1ajsa_ 161 WDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAI 240 (412)
T ss_dssp EETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHH
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECHHHHHHHCCCCCCCHHHH
T ss_conf 36233554378999999725677389995589998687899999999999986389789830765654059865651566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (412)
T d1ajsa_ 241 RYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWT 320 (412)
T ss_dssp HHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf 65444124321234663223577777345445616788999999999998631535641689999999853888899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~ls~~~v~~L~~e~gV~~vpg~Ri~~ag~~~~~i~~~ 400 (412)
T d1ajsa_ 321 GNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYV 400 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTSEEEGGGCCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHCCEEEECCCEEEECCCCHHHHHHH
T ss_conf 99999999999999999999998489887036658975798459899999999985999981898688336988889999
Q ss_pred -----------E
Q ss_conf -----------8
Q 001511 467 -----------K 467 (1064)
Q Consensus 467 -----------~ 467 (1064)
+
T Consensus 401 a~aI~~av~~~~ 412 (412)
T d1ajsa_ 401 ATSIHEAVTKIQ 412 (412)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999639
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=0 Score=31099.63 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~~~~~pir~~~~~~~~~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LRea 80 (412)
T d1bw0a_ 1 WDVSMSNHAGLVFNPIRTVSDNAKPSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREA 80 (412)
T ss_dssp CCCCCCHHHHTCCCHHHHHHHTCCCCCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHH
T ss_pred CCCCHHHCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 98781234568852899999856777799984788697899999852129999999998628777788998688999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~ 160 (412)
T d1bw0a_ 81 VATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDW 160 (412)
T ss_dssp HHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTT
T ss_pred HHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 99999975475435687888886999446222025666543114432046411330144455405864222332223333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~l~~~~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
T d1bw0a_ 161 EADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTV 240 (412)
T ss_dssp EECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSC
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 12467887653111222222334333332201443023211222377666520217875447888764100001223433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 320 (412)
T d1bw0a_ 241 PRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAM 320 (412)
T ss_dssp CEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 11311555755756877743201240433003555554034553347750343202222333222333322110278999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~~~~e~l~eal 400 (412)
T d1bw0a_ 321 YLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAV 400 (412)
T ss_dssp HHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHH
T ss_pred HHHHHHHHHCCCEECCCCCCEEEEEECCHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCHHHHHHHH
T ss_conf 99999987349254378971499995782343788899999999998699999966214899939999738999999999
Q ss_pred -----------E
Q ss_conf -----------8
Q 001511 467 -----------K 467 (1064)
Q Consensus 467 -----------~ 467 (1064)
.
T Consensus 401 ~Rl~~~l~~~~~ 412 (412)
T d1bw0a_ 401 ERIKAFCQRHAA 412 (412)
T ss_dssp HHHHHHHHHHBC
T ss_pred HHHHHHHHHCCC
T ss_conf 999999986179
|
| >d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycoside hydrolase/deacetylase family: AmyC N-terminal domain-like domain: Hypothetical protein TT1467, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=31099.24 Aligned_cols=1 Identities=0% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~lalvlH~HqP~vr~~~~~~~~e~w~~~a~~e~YlPll~~~~~l~~~~~~~k~t~~lsP~LleqL~D~~l~~~f~~~l 80 (412)
T d1ufaa2 1 MARFALVLHAHLPYVRAHGMWPFGEETLYEAMAETYLPLIRVLERLRAEGVEAPFTLGITPILAEQLADARIKEGFWAYA 80 (412)
T ss_dssp CEEEEEEEEECCCCCTTSCSTTTSHHHHHHHHHHTHHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHCHHHHHHHHHHH
T ss_conf 96379998257876568987874245999999998888999999998428983399997789999850878888889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~r~L~~~G~vEl~~~~y~H~ilpll~~~~~~~~ 160 (412)
T d1ufaa2 81 KDRLERAQGDYQRYRGTALEASARHQVAFWELTLDHFQRLSGDLVAAFRKAEEGGQVELITSNATHGYSPLLGYDEALWA 160 (412)
T ss_dssp HHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSEEEEEECTTCBCGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCCCHHHHHH
T ss_conf 99998750556532340667888888999999999999965458999999997598688835412333321796799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 Qi~~~~~~~~~~fG~~P~G~W~~E~a~s~~~l~~~~~~g~~~~~~~gl~~iL~~~Gi~y~~~d~~~l~~~~~~~~~~~~~ 240 (412)
T d1ufaa2 161 QIKTGVSTYRRHFAKDPTGFWLPEMAYRPKGPWKPPVEGPPEGVRPGVDELLMRAGIRYTFVDAHLVQGGEPLSPYGEAA 240 (412)
T ss_dssp HHHHHHHHHHHHHSSCCCBEECGGGCBCCSEEECCSSSSSCCEEECCHHHHHHHTTCCEEEECHHHHHCSCCCCC-----
T ss_pred HHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEECHHHHHCCCCCCCCCCCC
T ss_conf 99999999999759998867674222044113433321442102452889999739978997749985078766555556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~y~~~~~~~~v~~ffRD~~lSd~I~~~~~Gf~~~~~~~e~a~~d~~~~l~~~r~t~~~~~~~~~~~~Dgen 320 (412)
T d1ufaa2 241 LGPVESQEATYHVHELESGLRVLARNPETTLQVWSADYGYPGEGLYREFHRKDPLSGLHHWRVTHRKADLAEKAPYDPEA 320 (412)
T ss_dssp ---CCCCGGGGSCEECTTSCEEEEBCHHHHHHHHCTTTSGGGSTTSBCSSCCCTTTCCCCEECCCSSCCGGGCEECCHHH
T ss_pred CCCCCCCCCCEEEECCCCEEEEEECCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 67533345650330489738999668777546332326988765356665221334489987113467855361068899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 awe~~~~~a~~Fl~~l~~~~~~~~~~ivv~~~D~ElFGhww~eg~~fL~~l~~~l~~~~~i~~tT~se~l~~p~~~v~lp 400 (412)
T d1ufaa2 321 AFAKTEEHARHFVGLLERLAGRHPEGVILSPYDAELFGHWWYEGVAWLEAVLRLLAQNPKVRPVTAREAVQGPAVRTALP 400 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGBTTTBTTHHHHHHHHHHHHHTCSSEEECCHHHHTCSCCEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCCEEECC
T ss_conf 99998977999999999875058887589445588604024310999999999863189839976999982889714258
Q ss_pred -----------E
Q ss_conf -----------8
Q 001511 467 -----------K 467 (1064)
Q Consensus 467 -----------~ 467 (1064)
.
T Consensus 401 ~sSWg~gg~~~v 412 (412)
T d1ufaa2 401 EGSWGRGGDHRV 412 (412)
T ss_dssp SBCSSGGGSSTT
T ss_pred CCCCCCCCCCCC
T ss_conf 988767898889
|
| >d1t3ca_ d.92.1.7 (A:) Botulinum neurotoxin {Clostridium botulinum, serotype E [TaxId: 1491]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Clostridium neurotoxins, catalytic domain
domain: Botulinum neurotoxin
species: Clostridium botulinum, serotype E [TaxId: 1491]
Probab=100.00 E-value=0 Score=31029.01 Aligned_cols=1 Identities=0% Similarity=-1.689 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~InnFNyndPVnn~~I~~~r~~~~~~~~KAFkI~~nIWViPER~~~~t~p~d~~pp~~~~~~d~~yYDpnyLsTD~EKD 80 (411)
T d1t3ca_ 1 PKINSFNYNDPVNDRTILYIKPGGCQEFYKSFNIMKNIWIIPERNVIGTTPQDFHPPTSLKNGDSSYYDPNYLQSDEEKD 80 (411)
T ss_dssp CCCCCCCTTSCCCSSSEEEEECTTCSSCEEEEEEETTEEEEEEECCTTCCGGGGSCSCSTTTTSSCCBCTTTTCSHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHH
T ss_conf 97666667898899728999448899712435620776875111247778212489732346887513753145621788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~FLk~iIKLf~RINs~~~G~~LL~~Is~aiPf~G~~~t~~~ef~~~~~~~~n~~~s~~~~~~~~~NlvIfGPg~nI~en~ 160 (411)
T d1t3ca_ 81 RFLKIVTKIFNRINNNLSGGILLEELSKANPYLGNDNTPDNQFHIGDASAVEIKFSNGSQDILLPNVIIMGAEPDLFETN 160 (411)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHTCCCCSCCTTSCTTSCCCCTTTCEEEECTTSCEEEECCSEEEEECCSBTTCCE
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCHHHEEEEEEEECCCCCCCCCC
T ss_conf 99999999999863745799999999736875789999853311355430356336885201310269987885425665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~n~~~s~nGfGt~~~i~F~P~~t~~f~~~~~~~F~~DPAl~L~heLIhsLh~LYGIk~i~~~~~i~~~~~~~~ 240 (411)
T d1t3ca_ 161 SSNISLRNNYMPSNHGFGSIAIVTFSPEYSFRFNDNSMNEFIQDPALTLMHQLIHSLHGLYGAKGITTKYTITQKQNPLI 240 (411)
T ss_dssp EEECCCGGGCCGGGTTSCCCEEEECCTTEEEEEECTTSCEEECCHHHHHHHHHHHHHHHHTTCCTTTTTCEECTTTTTCC
T ss_pred CEEEEECCCCCHHHCCCCEEEEEEECCCEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 03787405776322476504799976634786136777714248899999999999987618667887642101000556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~v~~eelltfGG~D~~~I~t~~~~~~~~~~l~~f~~ia~~l~~i~~~n~~~n~yK~~~~~Ky~~~~d~~g~~~vN~ 320 (411)
T d1t3ca_ 241 TNIRGTNIEEFLTFGGTDLNIITSAQSNDIYTNLLADYKKIASKLSKVQVSNPLLNPYKDVFEAKYGLDKDASGIYSVNI 320 (411)
T ss_dssp SCTTCEEHHHHHHHCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTSCCSCGGGHHHHHHHHHHTTEEECTTSCEEECH
T ss_pred HCCCCCCCEEEEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEH
T ss_conf 41477554000300687800048711677999999999999999888627884178999999998577657887288548
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~kF~~~y~~l~~fTE~~~~~~f~v~~r~~Y~~~y~~~~~~nlldd~iYti~eGFNi~nl~~n~~GQN~~~N~~~~~~i~~ 400 (411)
T d1t3ca_ 321 NKFNDIFKKLYSFTEFDLATKFQVKCRQTYIGQYKYFKLSNLLNDSIYNISEGYNINNLKVNFRGQNANLNPRIITPITG 400 (411)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTCCCCSCSCSCCCEEEESCTTCTTTCBTTTBTCCGGGGGGGGGGBTTTSGGGEECCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 99999999986223344668886887776886357632255467653221467433432001367653238465346785
Q ss_pred ----------E
Q ss_conf ----------8
Q 001511 467 ----------K 467 (1064)
Q Consensus 467 ----------~ 467 (1064)
.
T Consensus 401 ~glv~~~~~~C 411 (411)
T d1t3ca_ 401 RGLVKKIIRFC 411 (411)
T ss_dssp TTHHHHHSSCC
T ss_pred CHHHHHHHHCC
T ss_conf 20588776339
|
| >d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: N-acylglucosamine (NAG) epimerase domain: Putative NAG isomerase YihS species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=31026.75 Aligned_cols=1 Identities=0% Similarity=-0.825 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~r~wL~~~~~~l~~~~~~~~~~gGF~~l~~dG~~~~~~~k~~~~~aR~~~~fs~a~~~g~~~~~~~A~~g~~f 80 (411)
T d2afaa1 1 KWFNTLSHNRWLEQETDRIFNFGKNAVVPTGFGWLGNKGQIKEEMGTHLWITARMLHVYSVAASMGRPGAYDLVDHGIKA 80 (411)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHGGGEETTEECCBCTTSCBCGGGCEEHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 97687777899999999999864617789972346899897888772147768999999999975897799999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 L~~~~~d~~~Gg~~~~~~~~~~~d~~k~~Y~~AF~l~ala~~~~~g~~~~~~~a~~~~~~l~~~~~~~~~G~~~~~~~~~ 160 (411)
T d2afaa1 81 MNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDEA 160 (411)
T ss_dssp TTTTTBCTTTSSBCSEECSSSEEECCEEHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTT
T ss_pred HHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCC
T ss_conf 99856767998489862699986532104889999999999988588889999999999999996075689743220555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~n~~mhl~eA~~~l~~at~d~~~~~~a~~~~~~~~~~~~~~~~~~l~E~f~~dw~~~~~~~~~~~~~~~~~ 240 (411)
T d2afaa1 161 FSQTEDYRGGNANMHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRA 240 (411)
T ss_dssp SCCBCSCEEHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHCCCCCGGGTTCCCCEECTTCCBCTTTTTTCTTCCTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 67754424467448999999999884288999999999999888765156678411112666541443301264324564
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~pGH~iE~aWlll~~~~~~~~~~~~~~~~~l~~A~~l~~~~~~~g~d~d~~gg~~~~~~~~g~~~~~~k~~W~qaEa 320 (411)
T d2afaa1 241 YGGTPGHWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEA 320 (411)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHBSCSSSSSBCSCBCTTSCBSSCCEEHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf 33474138899999999999973134567299999999999999985726578980584015899967777455599999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 i~a~l~ly~~tgd~~yl~~a~~~~~~~~~~f~D~~~G~W~~~l~~~g~p~~~~~~g~~~~yH~~~a~~~~~~~~~~~~~~ 400 (411)
T d2afaa1 321 MGTAYALYTLTDDSQYEEWYQKWWDYCIKYLMDYENGSWWQELDADNKVTTKVWDGKQDIYHLLHCLVIPRLPLAPGLAP 400 (411)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCTTTSSBCSEECTTSCBCC----CCCCCTTTHHHHTGGGSCSSSCHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHH
T ss_conf 99999999866989999999999999998687999983464589997998888999987206999998615889974218
Q ss_pred ----------E
Q ss_conf ----------8
Q 001511 467 ----------K 467 (1064)
Q Consensus 467 ----------~ 467 (1064)
-
T Consensus 401 ~~~~~~~~~~~ 411 (411)
T d2afaa1 401 AVAAGLLDINA 411 (411)
T ss_dssp HHHTTCTTTTC
T ss_pred HHHCCCCCCCC
T ss_conf 88701346689
|
| >d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Formin homology 2 domain (FH2 domain) superfamily: Formin homology 2 domain (FH2 domain) family: Formin homology 2 domain (FH2 domain) domain: Bni1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=31025.32 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~PkP~~klK~l~W~ki~~~~~tiW~~i~~~~~~~~~~~~~~~~~le~~F~~k~~~~~~~~~~~~~~~~~lLd~kr~qni 80 (411)
T d1ux5a_ 1 KYPRPHKKLKQLHWEKLDCTDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASKRKEDLQKITFLSRDISQQF 80 (411)
T ss_dssp CCCCCSSCBCCCCCCCCSSCCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHHHHHHHHTTTSBCCSCHHHHHHH
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 96989999989776159998988200204410036788663099999986447777776666666662001767899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~I~L~~~~~~s~~~i~~ai~~~d~~~l~~~~l~~ll~~~~~~~~~~~~l~~~lPt~eE~~~l~~~~~~~~~~~d~~~L~~ 160 (411)
T d1ux5a_ 81 GINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQR 160 (411)
T ss_dssp HHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSSCSTTBCH
T ss_pred HHHHHHCCCCCHHHHHHHHHHCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHCCH
T ss_conf 89998706999999999998368542487899999830210134799999817993789999999851445478454387
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~Eqf~~~l~~~~i~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~A~GF 240 (411)
T d1ux5a_ 161 ADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQAQGF 240 (411)
T ss_dssp HHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCGGGCCSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 99999999862334499999999999999999999999999999999999957679999999999860625899871235
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 kL~sL~kL~d~Ks~d~~~tLL~yiv~~~~~~~p~l~~~~~el~~v~~a~~~~~~~l~~~~~~L~~~l~~i~~~~~~~~~~ 320 (411)
T d1ux5a_ 241 KLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLS 320 (411)
T ss_dssp CGGGGGGSSSCBCTTSCSBHHHHHHHHHHHHCGGGGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTT
T ss_pred EHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 23898876521179998018999999999869075332877888998861899999999999999999999999862025
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~d~f~~~~~~fl~~~~~~~~~l~~~~~~~~~~~~~~~~yfGEd~~~~~~~~~fF~~~~~F~~~~~~a~~en~~ 400 (411)
T d1ux5a_ 321 DSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLA 400 (411)
T ss_dssp CTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 40002511169999999999999999999999999999999999983899888789999999999999999999999999
Q ss_pred ----------E
Q ss_conf ----------8
Q 001511 467 ----------K 467 (1064)
Q Consensus 467 ----------~ 467 (1064)
+
T Consensus 401 ~~e~e~~~~k~ 411 (411)
T d1ux5a_ 401 AEEEERLYIKH 411 (411)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
T ss_conf 99999987209
|
| >d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome p450 152a1 (Bs-beta) species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=31019.93 Aligned_cols=1 Identities=100% Similarity=0.304 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 p~~~~~~~~l~~~~~~~~f~~~~~~kyg~~if~~~~~g~~~vvv~~pe~i~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~ 80 (411)
T d1izoa_ 1 PHDKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFYDTDRFQRQNALPKRVQKSLFGVNAIQ 80 (411)
T ss_dssp CBCCCTTHHHHHHHHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHTCTTTEECTTCSCHHHHTTTTCTTCGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHCCCCCEECCCCCHHHHHHHCCCCCCC
T ss_conf 98997014999997799999999999799769999889528999799999999769997113777287777644899645
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~dg~~h~~~R~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~l~~~v~~~~~g~~~~~~~~~~~~~~ 160 (411)
T d1izoa_ 81 GMDGSAHIHRKMLFLSLMTPPHQKRLAELMTEEWKAAVTRWEKADEVVLFEEAKEILCRVACYWAGVPLKETEVKERADD 160 (411)
T ss_dssp GCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHTTSSEEEHHHHHHHHHHHHHHHHHTCCCCTTTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 77808999999999873199999999999999999999985425751299999999998888874887647999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~k~~~a~~~~~~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~ag~~ 240 (411)
T d1izoa_ 161 FIDMVDAFGAVGPRHWKGRRARPRAEEWIEVMIEDARAGLLKTTSGTALHEMAFHTQEDGSQLDSRMAAIELINVLRPIV 240 (411)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTSHHHHHHHCBCTTSCBCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 99999876321310399999999999999999998621224586322899999986751775311013456665320332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 tts~~l~~~l~~L~~~P~vq~kl~~e~~~~l~a~i~E~lRl~p~~~~~~r~~~~d~~i~g~~ipkgt~V~~~~~~~~~dp 320 (411)
T d1izoa_ 241 AISYFLVFSALALHEHPKYKEWLRSGNSREREMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTSVLLDLYGTNHDP 320 (411)
T ss_dssp THHHHHHHHHHHHHHSTHHHHHHHTCCHHHHHHHHHHHHHHSCCCCEEEEEECSCEEETTEEECTTCEEEEEHHHHHTCT
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCC
T ss_conf 30288999999987310123221001330499999999986503322344333334431043464221101355530442
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~p~~F~PeR~~~~~~~~~~~~pFg~G~~~~~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~p~ 400 (411)
T d1izoa_ 321 RLWDHPDEFRPERFAEREENLFDMIPQGGGHAEKGHRCPGEGITIEVMKASLDFLVHQIEYDVPEQSLHYSLARMPSLPE 400 (411)
T ss_dssp TTSSSTTSCCGGGGTTCCCCSSSCCTTCSSCTTSSSCCTTHHHHHHHHHHHHHHHHHTEEEECCSCCCCCCSSSSSCCCT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCC
T ss_conf 00899562186535899999776479899899988088439999999999999999826898179986887255377568
Q ss_pred ----------E
Q ss_conf ----------8
Q 001511 467 ----------K 467 (1064)
Q Consensus 467 ----------~ 467 (1064)
.
T Consensus 401 ~~~~~~~~~Rr 411 (411)
T d1izoa_ 401 SGFVMSGIRRK 411 (411)
T ss_dssp TCCEEEEEEEC
T ss_pred CCCEEEEEECC
T ss_conf 99079988693
|
| >d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: Catalase-peroxidase KatG domain: Catalase-peroxidase KatG species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=30955.38 Aligned_cols=1 Identities=0% Similarity=0.968 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~~~~~~~~wwp~~~~~~~l~~~~~~~~p~~~~f~y~~~~~~ld~~a~~~d~~~l~~~s~~wwpaD~G~ygP~lVRl 80 (410)
T d2ccaa1 1 MKYPVEGGGNQDWWPNRLNLKVLHQNPAVADPMGAAFDYAAEVATIDVDALTRDIEEVMTTSQPWWPADYGHYGPLFIRM 80 (410)
T ss_dssp CCCGGGTCCGGGTSTTCCCGGGGSCSCGGGCTTCTTCCHHHHHTTCCHHHHHHHHHHHHTSCCTTSCCGGGCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 98987899766628644587555148877899999862899986269999999999998544335765456633001100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 AWHsAGTYR~~DgRGGanGg~iRfaPe~sWp~N~~LdkAr~LL~piK~ky~~~iS~ADLi~LAG~vAiE~mGg~~i~f~~ 160 (410)
T d2ccaa1 81 AWHAAGTYRIHDGRGGAGGGMQRFAPLNSWPDNASLDKARRLLWPVKKKYGKKLSWADLIVFAGNCALESMGFKTFGFGF 160 (410)
T ss_dssp HHHHHTTCCTTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHTTHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCCCSCCCB
T ss_pred HHHHHCEEECCCCCCCCCCCEECCCHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEECCEECCCCCCCCC
T ss_conf 22331301212677899877466541115312231899999988888760546567660336350210141255112455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 GR~D~~~~~~~~~g~~~~~~~~~R~~~~~el~d~l~~~~m~li~~np~g~~g~pd~~~~a~~lRd~f~rMglnD~E~VAL 240 (410)
T d2ccaa1 161 GRVDQWEPDEVYWGKEATWLGDERYSGKRDLENPLAAVQMGLIYVNPEGPNGNPDPMAAAVDIRETFRRMAMNDVETAAL 240 (410)
T ss_dssp CCCCCSSCCCCCCCSCSSTTCCCCEETTTEECTTCCSSSTTCSSSCTTSGGGCCCHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 54435544200378866377899857632456754444458767787534689871017999999998706871766533
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 iaGgHtlGk~Hg~~~~~~~g~~p~~a~~~~~G~g~~~~~~~~~~~~~~~sG~eg~WT~~P~~~dN~yF~~Ll~~~we~~k 320 (410)
T d2ccaa1 241 IVGGHTFGKTHGAGPADLVGPEPEAAPLEQMGLGWKSSYGTGTGKDAITSGIEVVWTNTPTKWDNSFLEILYGYEWELTK 320 (410)
T ss_dssp HHHHHTSCCCCBSSCGGGBCCCGGGSCGGGTTCCCCBCSTTSSGGGCBSSSCCCCCCSCTTSCSSHHHHHHHHSCEEEEE
T ss_pred HCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECC
T ss_conf 12421113346788734257784658702157755688787778555367865547668514535777541356515214
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 sp~g~~qw~~~d~~~~~~~pda~~~~~~~~~ml~tDlaL~~Dp~~r~iae~ya~d~d~F~~dFa~AW~KL~hrDmgp~~r 400 (410)
T d2ccaa1 321 SPAGAWQYTAKDGAGAGTIPDPFGGPGRSPTMLATDLSLRVDPIYERITRRWLEHPEELADEFAKAWYKLIHRDMGPVAR 400 (410)
T ss_dssp CTTSCEEEEEGGGTTTTCBCCTTSCCCBCCEECHHHHHHHHSHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGG
T ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 45655310355777777777776776678764226677520987899999997099999999999999986125796342
Q ss_pred ---------E
Q ss_conf ---------8
Q 001511 467 ---------K 467 (1064)
Q Consensus 467 ---------~ 467 (1064)
+
T Consensus 401 ~~g~~~p~e~ 410 (410)
T d2ccaa1 401 YLGPLVPKQT 410 (410)
T ss_dssp CBSTTCCSCC
T ss_pred CCCCCCCCCC
T ss_conf 0689999889
|
| >d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Myo-inositol 1-phosphate synthase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=30950.93 Aligned_cols=1 Identities=0% Similarity=0.237 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~v~s~~~~y~~~~i~~~y~y~~t~v~~~~~g~~~v~p~~~~~~f~t~~~~p~klGVmlVG~GGnngTT~~aGv~An 80 (410)
T d1p1ja1 1 ITSVKVVTDKCTYKDNELLTKYSYENAVVTKTASGRFDVTPTVQDYVFKLDLKKPEKLGIMLIGLGGNNGSTLVASVLAN 80 (410)
T ss_dssp CCEEEECCTTEEEETTEEEEEEEEEEEEEEECTTSEEEEEEEEEEEEEEEECCCCSSEEEEEETTTSHHHHHHHHHHHHH
T ss_pred CCCEEEECCCEEECCCEEEEEEEECCEEEEECCCCEEEEEEEEEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 96569828980773411799988510389976897089987567789994256786478998417852899999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 k~gl~w~tk~G~~~pny~GSltq~stirlG~~~~g~~~~~p~kd~lPl~~p~DiVfGGWDI~~~nl~eAa~rA~VLd~~l 160 (410)
T d1p1ja1 81 KHNVEFQTKEGVKQPNYFGSMTQCSTLKLGIDAEGNDVYAPFNSLLPMVSPNDFVVSGWDINNADLYEAMQRSQVLEYDL 160 (410)
T ss_dssp HTTCCEEETTEEECCCCTTCHHHHCEEEEEECTTSCEEEEEGGGSSCCCCGGGEEEEEECSSCCCHHHHHHHHTCSCHHH
T ss_pred HCCCCCCCCCCCCCCCCCCCEEEECEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCHHH
T ss_conf 62786333556546763230210031431455788845663776188898412789245699988999998769999899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 l~ql~~~L~~i~P~psV~~~dfiaanq~~ra~nvi~~d~~~~~~~~sk~e~ve~Ir~DIr~Fk~~n~lDrVVVlWtASTE 240 (410)
T d1p1ja1 161 QQRLKAKMSLVKPLPSIYYPDFIAANQDERANNCINLDEKGNVTTRGKWTHLQRIRRDIQNFKEENALDKVIVLWTANTE 240 (410)
T ss_dssp HHHHHHHHTTCCCBCBCCCGGGSCGGGGGGCCCBSCBCTTSCBCSCCHHHHHHHHHHHHHHHHHHTTCSCEEEEECSCCC
T ss_pred HHHHHHHHHCCCCCCCEECCHHHHCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 99999998638634320060555212112102322456545546655899999999999999987389748999458887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 r~~~~~p~v~~t~e~l~~ai~~n~~eIsPS~lYA~AAI~eG~pyvNgsPq~t~vPal~eLA~~~gv~iaG~DfKdslLA~ 320 (410)
T d1p1ja1 241 RYVEVSPGVNDTMENLLQSIKNDHEEIAPSTIFAAASILEGVPYINGSPQNTFVPGLVQLAEHEGTFIAGDDLKDSLLAT 320 (410)
T ss_dssp CCCCCCTTTTSSHHHHHHHHHTTCTTCCHHHHHHHHHHHTTCCEEECSCSCCCCHHHHHHHHHHTCCEEESSBCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCHHHHHHHH
T ss_conf 68888832124399999887559987787999999999739984468864456579999984279458715124322345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 pli~dL~vl~e~~trI~~~~dg~vl~d~~~f~~~~~Vls~Lsyl~KAPl~p~g~~vvnal~~Qr~~len~~ra~~Gl~p~ 400 (410)
T d1p1ja1 321 PLIIDLLVMTEFCTRVSYKKVDPVKEDAGKFENFYPVLTFLSYWLKAPLTRPGFHPVNGLNKQRTALENFLRLLIGLPSQ 400 (410)
T ss_dssp HHHHHHHHHHHHHHTEEEEECBTTBTTCSCCBCCCSBCGGGGGGBSSCCCCTTCCCCCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHEEEEEECCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999999887650368621765457622162153089898887538989999965016888999999999997289986
Q ss_pred ---------E
Q ss_conf ---------8
Q 001511 467 ---------K 467 (1064)
Q Consensus 467 ---------~ 467 (1064)
-
T Consensus 401 ~~m~le~~l~ 410 (410)
T d1p1ja1 401 NELRFEERLL 410 (410)
T ss_dssp CCCCHHHHCC
T ss_pred CCCEEEEECC
T ss_conf 6651146329
|
| >d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: DNA polymerase I (Klenow fragment) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=30950.38 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~g~~~~~~~iE~~~~~~la~Me~~Gi~vD~e~l~~~~~~~~~~~~~l~~~~~~~~g~~fn~~S~~ql~~~Lf~~lgl~~ 80 (410)
T d1kfsa2 1 HKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKP 80 (410)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHHHHCBCBCHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCSCTTTTSHHHHTTTSSCSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 99689999999988999999999739898899999999999999999999999995990899999999999997429998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~t~~g~~~t~~~~L~~~~~~~~~~~~l~~~r~~~k~~~~~~~~~~~~~~~~~gri~~~~~~~gt~TGR~s~s~pnlQn 160 (410)
T d1kfsa2 81 LKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQN 160 (410)
T ss_dssp CCCCC----TTTCCHHHHHTTTCHHHHHHHHHHHHHHHHHHTTTTGGGGBCTTTSSBCCEEESSCCSSSCCEEESSCGGG
T ss_pred CCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEECCCCCCCCCCCC
T ss_conf 76478898554055410112223899999999999999887652433125778995412575124200232136863035
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~P~~~~~~~~iR~~fia~~G~~lv~~D~sqiE~Rv~A~ls~D~~l~~~~~~g~D~h~~~A~~~~~~~~~~~~~~~R~~aK 240 (410)
T d1kfsa2 161 IPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAK 240 (410)
T ss_dssp SCSSSHHHHHHHTTBBCCTTEEEEEEEETTHHHHHHHHHTTCHHHHHHHHTTCCHHHHHHHHHTTCCTTTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHEEECCCCCEEEEECHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHHHHHHCCCCCHHCCCCHHHHHH
T ss_conf 78887423255632736999779985545384443444676224788885265067641999819973210220043320
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~g~~YG~G~~~la~~l~~s~~eA~~~~~~~~~~~p~i~~~~~~~~~~a~~~g~v~t~~Grr~~~~~~~~~~~~~r~~ 320 (410)
T d1kfsa2 241 AINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAA 320 (410)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCTTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSEEECTTCCEEECTTTTCSSHHHHHH
T ss_pred HEEEEHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCHHHHHHH
T ss_conf 31230141356778998809899999999999988787846899999999997595530368503699754405878888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~r~a~N~~iQg~aadi~k~a~~~i~~~l~~~~~~~~~v~~VHDEiv~ev~~~~~~~~~~~i~~~M~~~~~~~vPl~~e~ 400 (410)
T d1kfsa2 321 AERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDVPLLVEV 400 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEEETTEEEEEEETTTHHHHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 88888652013389999999999999999852899889998453258998389999999999999846456898468320
Q ss_pred ---------E
Q ss_conf ---------8
Q 001511 467 ---------K 467 (1064)
Q Consensus 467 ---------~ 467 (1064)
+
T Consensus 401 ~~g~~w~e~h 410 (410)
T d1kfsa2 401 GSGENWDQAH 410 (410)
T ss_dssp EEESBHHHHC
T ss_pred CCCCCHHHHC
T ss_conf 5628868829
|
| >d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exomannosidase species: Cellvibrio mixtus [TaxId: 39650]
Probab=100.00 E-value=0 Score=30946.51 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~v~~~g~~f~~nG~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~l~~~k~~G~N~iR~~~~~~~~~~~~~~~~~~~~~ 80 (410)
T d1uuqa_ 1 EHFVRVNGGHFELQGKPYVITGVNMWYAAYLGAPNEVGDRDRLAKELDNLKAIGVNNLRVLAVSEKSEINSAVKPAVTNG 80 (410)
T ss_dssp CCCCEEETTEEEETTEEECEEEEECTTHHHHTCSSTTCCHHHHHHHHHHHHHTTCCEEEEECCCBCCCSTTSCSSCSBSS
T ss_pred CCCEEEECCEEEECCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 99879989999999989999999317765566567879999999999999977995999687366545555568776554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~g~~de~gl~~~d~~l~~a~~~Gi~vi~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (410)
T d1uuqa_ 81 FGNYDETLLQGLDYLLVELAKRDMTVVLYFNNFWQWSGGMTQYMAWIEGEPVQDPNVTNEWEAFMAKSASFYRSEKAQQE 160 (410)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHTTCEEEEECCBSSSTTCHHHHHHHHHHTCCCCCHHHHCCHHHHHHHHHGGGGCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 33245889999999999999739856874034556657754465312477767655555553335665300368999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~l~NE~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~dp~~~v~~~~~~~~~~ 240 (410)
T d1uuqa_ 161 YRKTLEKIITRVNSINGKAYVDDATIMSWQLANEPRPGNSQTTAEEKQIYIDWVHAAAAYIKTLDAHHLVSSGSEGEMGS 240 (410)
T ss_dssp HHHHHHHHHTCBCTTTCCBGGGCTTEEEEESCBSCCSCSTTCCHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCCSGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf 99999999986546666765577067666533665776676543320346677777775455408995576424566666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~D~~s~h~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPv~i~E~G~~~~~~~~~ 320 (410)
T d1uuqa_ 241 VNDMQVFIDAHATPDIDYLTYHMWIRNWSWFDKTKPAETWPSAWEKAQNYMRAHIDVAKQLNKPLVLEEFGLDRDMGSYA 320 (410)
T ss_dssp TTCHHHHHHHHCSTTCCSEEEEECTTTTTSSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCGGGCCC
T ss_pred CCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf 44321013440477655688612754446555433322222015666778888888876249976650255656788888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~d~~~~~~ 400 (410)
T d1uuqa_ 321 MDSTTEYRDNYFRGVFELMLASLEQGEPSAGYNIWAWNGYGRTTRANYWWQEGDDFMGDPPQEEQGMYGVFDTDTSTIAI 400 (410)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHTTCSEEEEEESCEEETCCCCCTTCCCCTTSCCCSSCTTSCTTSSCEETTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHH
T ss_conf 76468999999999999999999828998999995416878888887778779987798985347348998899748899
Q ss_pred ---------E
Q ss_conf ---------8
Q 001511 467 ---------K 467 (1064)
Q Consensus 467 ---------~ 467 (1064)
-
T Consensus 401 ~~~~~~~~~~ 410 (410)
T d1uuqa_ 401 MKEFNARFQP 410 (410)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHCCC
T ss_conf 9999974197
|
| >d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of family B DNA polymerases species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=30947.14 Aligned_cols=1 Identities=0% Similarity=-0.892 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~ll~~~Y~~~~~~~vi~~~g~~~~~~~v~~~~~gf~PYFyv~~~~~~~~~~~~~~~~~~~~~~e~v~k 80 (410)
T d1s5ja1 1 EWLEEAQENKIYFLLQVDYDGKKGKAVCKLFDKETQKIYALYDNTGHKPYFLVDLEPDKVGKIPKIVRDPSFDHIETVSK 80 (410)
T ss_dssp CCSCBCCTTCEEEEEEEEEETTTTEEEEEEEETTTTEEEEEECCSCCCCEEEESSCHHHHTTCHHHHTCTTEEEEEEEEE
T ss_pred CCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 97655456875899986886329989999974269938999968896530899888216899998764236561799997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~ki~~~~p~~v~~~r~~~~~~~EadI~~~~RfliD~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (410)
T d1s5ja1 81 IDPYTWNKFKLTKIVVRDPLAVRRLRNDVPKAYEAHIKYFNNYMYDIGLIPGMPYVVKNGKLESVYLSLDEKDVEEIKKA 160 (410)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHTTSSSCEESCSSCHHHHHHHHHTCCTTSEEEEETTEEEECCCCCCHHHHHHHHHH
T ss_pred EECCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHCEEEECCCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCC
T ss_conf 71237853069999982899999999874654013668421179994886635899558743334555672011010133
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~lsfDIE~~~~~~~~fP~p~~~~~~ii~I~~~~~~~~~~v~~~~~~~~~~~~~ 240 (410)
T d1s5ja1 161 FADSDEMTRQMAVDWLPIFETEIPKIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKVLVLNRNDVNEGSV 240 (410)
T ss_dssp TTTSCHHHHHHHHHHTHHHHSCCCCCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEEEEECSSCCCCCCE
T ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCC
T ss_conf 34443000000011354333689984199999997878889897953367549999998165878999981677766544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~v~~~~sE~eLL~~F~~~i~dpDii~GyN~~~FD~pyL~~Ra~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 320 (410)
T d1s5ja1 241 KLDGISVERFNTEYELLGRFFDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKF 320 (410)
T ss_dssp EETTEEEEEESSHHHHHHHHHHHHTTCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEEECCE
T ss_conf 67980999978999999998754316666898435688689999999995996321531104741016855458976062
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~d~~~~~~~~~~l~sy~Ld~Va~~~Lg~~K~d~~~~~~~~~~~~l~~Y~~~D~~L~~~L~~~~~~~~l~~~~~~s~i~ 400 (410)
T d1s5ja1 321 FFNKAVRNYAFEGKYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLTTFNNDLTMKLIVLFSRIS 400 (410)
T ss_dssp HTSHHHHHHTSTTCCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred EEEHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 62148998752358788987999999869695567776565897999886099999999998652588899999999985
Q ss_pred ---------E
Q ss_conf ---------8
Q 001511 467 ---------K 467 (1064)
Q Consensus 467 ---------~ 467 (1064)
+
T Consensus 401 ~~plddv~r~ 410 (410)
T d1s5ja1 401 RLGIEELTRT 410 (410)
T ss_dssp CCCHHHHTTS
T ss_pred CCCHHHCCCC
T ss_conf 9798980479
|
| >d2cmza1 e.76.1.2 (A:1-409) Spike glycoprotein {Vesicular stomatitis indiana virus [TaxId: 11277]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Viral glycoprotein ectodomain-like superfamily: Viral glycoprotein ectodomain-like family: Spike glycoprotein-like domain: Spike glycoprotein species: Vesicular stomatitis indiana virus [TaxId: 11277]
Probab=100.00 E-value=0 Score=30878.13 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~iv~p~~~~~~W~~v~~~~l~CP~~~~~~~~~~~~~~~~~~~~p~~~t~~kv~G~~Chk~~w~ttC~~~wyg~~~it~ 80 (409)
T d2cmza1 1 KFTIVFPHNQKGNWKNVPSNYHYCPSSSDLNWHNDLIGTAIQVKMPKSHKAIQADGWMCHASKWVTTCDFRWYGPKYITQ 80 (409)
T ss_dssp CEEEEEECSCCCCCEECCTTCCCCGGGGCTTTCCSCEEEEEEEEEECCCSCCEECEEEEEEEEEEEEEEECTTSCEEEEE
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEECCEEEEEEEEEEEEEEEEECCEEEEE
T ss_conf 97689168888888237711244999745467786245558998103566336552798655899998746307558999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~i~~~~pt~~~C~~ai~~~~~G~~~~p~fPp~~C~w~tv~t~e~~~i~i~ph~V~lDpY~~~~~D~~F~gGkCs~~~C~T 160 (409)
T d2cmza1 81 SIRSFTPSVEQCKESIEQTKQGTWLNPGFPPQSCGYATVTDAEAVIVQVTPHHVLVDEYTGEWVDSQFINGKCSNYICPT 160 (409)
T ss_dssp EEEEECCCHHHHHHHHHHHHTTCCCCCCSCCCCCCTTSEEEEEEEEEEEEECCEEEETTTTEEECTTBGGGEECSSEEEB
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEECCCCEEECCCCCCCCCCCCCCCC
T ss_conf 99974499899999998876587258989985515631211037999996455325377882746757999668970677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~h~~tiWi~d~~~~~~C~~~~~~~~i~~~~~~gk~~s~g~~~~g~~~~~~~~~~~~gACkl~fCG~~GIRl~~GeWv~i~ 240 (409)
T d2cmza1 161 VHNSTTWHSDYKVKGLCDSNLISMDITFFSEDGELSSLGKEGTGFRSNYFAYETGGKACKMQYCKHWGVRLPSGVWFEMA 240 (409)
T ss_dssp SSSSCEEEESSCHHHHHGGGEEEEEEEEEESSCCGGGTTCSSCEEEETTEEEEECTTCEEEEETTEEEEECTTSBEEEES
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCCEEEECCCCHHCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCEECCCCCEEEEE
T ss_conf 67861661577666501355301211684255600014653038983785545778831254348754687798589986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~p~C~~~~~v~~~~~~~~~~~~~~~~e~~~~~~~Cl~tl~ki~~~~~iS~~dLSyL~p~~PG~G~AY~i~n 320 (409)
T d2cmza1 241 DKDLFAAARFPECPEGSSISAPSQTSVDVSLIQDVERILDYSLCQETWSKIRAGLPISPVDLSYLAPKNPGTGPAFTIIN 320 (409)
T ss_dssp CHHHHHHTTCCBCCTTCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHTTSCCSSEEEEEEEEET
T ss_pred CCCCCEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 66641002577799998655036775166778999877879998999999974798775555420567999864379989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 gtL~~~~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~G~NG~~~~~~~~~~p~~~~~~~~~d~~l~~~~ 400 (409)
T d2cmza1 321 GTLKYFETRYIRVDIAAPILSRMVGMISGTTTERELWDDWAPYEDVEIGPNGVLRTSSGYKFPLYMIGHGMLDSDLHLSS 400 (409)
T ss_dssp TEEEEEEEEEEEEEESSSEESSSEEEETTSCCEEECCCCCEEETTEEECGGGCEEETTEEECCHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEECCCEEEEECCEEEECHHHHCCCCHHHHHHHHH
T ss_conf 94897668999998226653332564477774542244646868844466526985994895656711520034444440
Q ss_pred --------E
Q ss_conf --------8
Q 001511 467 --------K 467 (1064)
Q Consensus 467 --------~ 467 (1064)
+
T Consensus 401 ~~~~~~HPh 409 (409)
T d2cmza1 401 KAQVFEHPH 409 (409)
T ss_dssp CCEECCCCC
T ss_pred CCCCCCCCC
T ss_conf 267678999
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=100.00 E-value=0 Score=30875.95 Aligned_cols=1 Identities=0% Similarity=0.868 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
|
T Consensus 1 ~~~~~~~~~~y~~~~~~~l~~l~pe~ah~~~~~~l~~~~~~~~~~~~~~~L~~~v~Gl~f~NPiglAAG~dk~~~~i~~~ 80 (409)
T d1tv5a1 1 FESYNPEFFLYDIFLKFCLKYIDGEICHDLFLLLGKYNILPYDTSNDSIYACTNIKHLDFINPFGVAAGFDKNGVCIDSI 80 (409)
T ss_dssp CCTTSTTCHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCSCCCCSCCCGGGCEEETTEEESSSEEECTTTTTTCSSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCEECCCCCEECCCCCCCHHHHHHH
T ss_conf 98778326789999999852599899999999999735777534677744466788764489687560668788999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~lGfG~ve~gTvT~~p~~GNp~PR~~r~~~~~~liN~~Gl~n~G~~~~~~~l~~~~~~~~~~~~~~~~i~gi~~~~~~~ 160 (409)
T d1tv5a1 81 LKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLILFRKRQEEDKLLSKHIVGVSIGKNKD 160 (409)
T ss_dssp HTTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCSCBSCHHHHHHHHHHHHHHHHHCSTTTTCEEEEEECCCTT
T ss_pred HHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 86688769951023035647897322345433321024677763589999987777654430566654300231454420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~aD~~elNiScPNt~glr~~~~~~~L~~ll~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (409)
T d1tv5a1 161 TVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKN 240 (409)
T ss_dssp CSCHHHHHHHHHHHHGGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 15788877999998850143100010265433442456889999999999999875301222221111111001111000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~ppi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlS 320 (409)
T d1tv5a1 241 NFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVS 320 (409)
T ss_dssp ----------------CCCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEE
T ss_pred CCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11222222110000000110123567865998589987024688999988606541011322225555334234677643
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 G~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~i~AGAs~VQv~T~li~~Gp~~v~~I~~~L~~~l~~~g~~~ 400 (409)
T d1tv5a1 321 GAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYYN 400 (409)
T ss_dssp EHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 10178899999999999708996099989979999999999849978763067871192899999999999999829998
Q ss_pred --------E
Q ss_conf --------8
Q 001511 467 --------K 467 (1064)
Q Consensus 467 --------~ 467 (1064)
+
T Consensus 401 i~e~iG~~h 409 (409)
T d1tv5a1 401 LKEAIGRKH 409 (409)
T ss_dssp SGGGTTTTC
T ss_pred HHHHCCCCC
T ss_conf 999539889
|
| >d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: DNA polymerase I (Klenow fragment) species: Thermus aquaticus [TaxId: 271]
Probab=100.00 E-value=0 Score=30874.27 Aligned_cols=1 Identities=100% Similarity=0.138 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~l~~~y~~lE~~l~~vl~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~~~~~~g~~fN~~S~~ql~~~L~~~l~l~~ 80 (409)
T d1qtma2 1 EERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPA 80 (409)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 90789999999968999999999729284899999999999999999999999995991899999999999999739997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~g~~~~~~~~l~~l~~~~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~grih~~~~~~gt~TGR~ss~~pnlq 160 (409)
T d1qtma2 81 IGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQ 160 (409)
T ss_dssp CCBCTTTCCBCCCHHHHHHTTTTCTHHHHHHHHHHHHHHHHHTTTTGGGGBCTTTSEECCEEESSCCSSSCCEEESSCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCHHH
T ss_conf 66656678755323368887421168999999889988888878778775038899163144556666665466650120
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~p~~~~~~~~~R~~f~a~~G~~lv~aD~sqiElRvlA~ls~D~~l~~~~~~g~D~~~~~a~~~~~~~~~~v~~~~R~~a 240 (409)
T d1qtma2 161 NIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAA 240 (409)
T ss_dssp SCCCSSHHHHHHHTTEECCTTEEEEEEEETTHHHHHHHHHHCCHHHHHHHHTTCCHHHHHHHHHHTCCGGGCCHHHHHHH
T ss_pred CCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCEECCCCCCHHHHHHHHCCCCCEEECHHHHHHH
T ss_conf 25410014454100555789968998530236324688860674411110157620101012212764223140676667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 K~~~fg~~YG~g~~~l~~~~~~~~~ea~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~v~t~~Gr~~~~~~~~~~~~~~~~ 320 (409)
T d1qtma2 241 KTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVRE 320 (409)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHSEEECTTCCEEECGGGGCSCHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 76410123576334566665442778999999998864235677788999887627233235653332100001254432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~N~~iQg~aAdi~k~a~~~~~~~l~~~~~~iv~~VHDEiv~ev~~~~a~~~~~~i~~~M~~~~~l~vPl~~e~~ 400 (409)
T d1qtma2 321 AAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVG 400 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSEEEEEEETTTHHHHHHHHHHHHHTSSCCSSCCCEEEE
T ss_pred HHHHHCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 20200121320399999999999999999886699899974413499987789999999999998603268997786621
Q ss_pred --------E
Q ss_conf --------8
Q 001511 467 --------K 467 (1064)
Q Consensus 467 --------~ 467 (1064)
+
T Consensus 401 ig~~W~e~k 409 (409)
T d1qtma2 401 IGEDWLSAK 409 (409)
T ss_dssp EESBHHHHC
T ss_pred ECCCHHHCC
T ss_conf 558967749
|
| >d1b25a1 a.110.1.1 (A:211-619) Formaldehyde ferredoxin oxidoreductase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Aldehyde ferredoxin oxidoreductase, C-terminal domains superfamily: Aldehyde ferredoxin oxidoreductase, C-terminal domains family: Aldehyde ferredoxin oxidoreductase, C-terminal domains domain: Formaldehyde ferredoxin oxidoreductase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=30871.66 Aligned_cols=1 Identities=0% Similarity=-0.925 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 D~e~~~~~~~~~~~~i~~~~~~~~~~~~GT~~~~~~~~~~g~lP~rNf~~g~~~~a~~isge~~~~~~~~~~~C~~Cpi~ 80 (409)
T d1b25a1 1 DKEELKKLSQEAYNEILNSPGYPFWKRQGTMAAVEWCNTNYALPTRNFSDGYFEFARSIDGYTMEGMKVQQRGCPYCNMP 80 (409)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTHHHHHHHGGGGHHHHHHHTTCSCBTTTTBSCCTTGGGGSHHHHHHHEEEEECCTTCSSC
T ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 98999999999999987194176788368599999998759968177878878873445899998775127888999678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 C~~~~~~~~g~~~gpEYEt~~~~Gs~~gi~D~~~v~~~n~lcd~~GlDtIs~G~~ia~amE~~e~Gll~~~~~~Gd~e~~ 160 (409)
T d1b25a1 81 CGNVVLDAEGQESELDYENVALLGSNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVMEAVERGILKEGPTFGDFKGA 160 (409)
T ss_dssp CEEEEECTTSCEEEECHHHHHHHTGGGTCCCHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHTTSSSSSCCTTCHHHH
T ss_pred CCCEEECCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 88358728987078536479887660289999999999999998687456450599999999977999866667886999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~ll~~Ia~r~GeiG~~La~G~~~aae~~G~~~~a~~vKG~e~p~~dpR~~~g~~l~yats~rGa~H~~~~~~~~~~~~~ 240 (409)
T d1b25a1 161 KQLALDIAYRKGELGNLAAEGVKAMAEKLGTHDFAMHVKGLEVSGYNCYIYPAMALAYGTSAIGAHHKEAWVIAWEIGTA 240 (409)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCHHHHHHHHTCGGGCCEETTEECCSCCCTTCHHHHHHHHHCTTSSCSTTCCCHHHHHTCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHCCC
T ss_conf 99999998667857899973399999994982321020777666527763024666551246787045533220331357
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dslg~C~F~~~~~~~~~e~~~~~l~avTG~~~t~eel~~~GeRi~ 320 (409)
T d1b25a1 241 PIEGEKAEKVEYKISYDPIKAQKVVELQRLRGGLFEMLTACRLPWVEVGLSLDYYPKLLKAITGVTYTWDDLYKAADRVY 320 (409)
T ss_dssp TTC--------CCCCCCTHHHHHHHHHHHHHTTHHHHHTCCSHHHHHHCCCTTHHHHHHHHHHSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 41110123312345678078999999999999999860404552214577899999999984388999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~L~R~fN~r~G~~~~~~~dD~lP~r~~~ep~~~Gp~~G~~~d~~~~e~~l~~YY~~rGWde~G~Pt~e~L~~LgL~~v~~ 400 (409)
T d1b25a1 321 SLIRAYWVREFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDELLSEYYRIRGWDERGIPKKETLKELDLDFVIP 400 (409)
T ss_dssp HHHHHHHHHHTTTCCCGGGGCCCTHHHHCCCSSSTTTTCCCCHHHHHHHHHHHHHHHTBCTTSCBCHHHHHHTTCTTHHH
T ss_pred HHHHHHHHHCCCCCCCHHHCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHH
T ss_conf 99999998606679983427797154118887787578868999999999999997399988846999999879966899
Q ss_pred --------E
Q ss_conf --------8
Q 001511 467 --------K 467 (1064)
Q Consensus 467 --------~ 467 (1064)
+
T Consensus 401 ~l~~~~~~~ 409 (409)
T d1b25a1 401 ELEKVTNLE 409 (409)
T ss_dssp HHHTTSCCC
T ss_pred HHHHHHCCC
T ss_conf 999986169
|
| >d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: LanC-like family: LanC-like domain: Nisin biosynthesis protein NisC species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=30871.43 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sLy~G~~GiaL~l~~l~~~t~~~~~~~~a~~~l~~~~~~~~~~~~~~~g 80 (409)
T d2g0da1 1 KKNIKRNVEKIIAQWDERTRKNKENFDFGELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNYIEYIVSKLSTYGLLTGS 80 (409)
T ss_dssp CCHHHHHHHHHHHHHHHHHHC-----CGGGGSTTTSHHHHHHHHHTTTTSTTHHHHHHHHHHHHHHHHHHHHHHCCSCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 95188999999985566530365569989983238779999999999886498789999999999999998607998863
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 lf~G~~Gi~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~D~l~G~aG~~~~LL~~~~~~~~~~~~ 160 (409)
T d2g0da1 81 LYSGAAGIALSILHLREDDEKYKNLLDSLNRYIEYFVREKIEGFNLENITPPDYDVIEGLSGILSYLLLINDEQYDDLKI 160 (409)
T ss_dssp TTTSHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCHHHHSSSSSHHHHHHHHTTCCCGGGHHHHH
T ss_pred EECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHHCCCCCCHHHH
T ss_conf 00787999999999986050356899999999999999999874402367766212226188999999833222407899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~~L~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (409)
T d2g0da1 161 LIINFLSNLTKENNGLISLYIKSENQMSQSESEMYPLGCLNMGLAHGLAGVGCILAYAHIKGYSNEASLSALQKIIFIYE 240 (409)
T ss_dssp HHHHHHHHTTSCCSSSCTTCBCGGGSSSHHHHHHCTTCBEECCTTTSHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999997413554333454445552200036778776426550799999999998843788218999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~la~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
T d2g0da1 241 KFELERKKQFLWKDGLVADELKKEKVIREASFIRDAWCYGGPGISLLYLYGGLALDNDYFVDKAEKILESAMQRKLGIDS 320 (409)
T ss_dssp HHCCCGGGTTCCCSEECHHHHHHTSCCSCCSCCCCCSSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCTTCCS
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98642335688987676531123334456766655437884679999999998719889999999999999983548998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~LCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGi~~~Ll~~~~~~~~~~W~~~~L 400 (409)
T d2g0da1 321 YMICHGYSGLIEICSLFKRLLNTKKFDSYMEEFNVNSEQILEEYGDESGTGFLEGISGCILVLSKFEYSINFTYWRQALL 400 (409)
T ss_dssp CCTTTSHHHHHHHHHHHHHHHCCCTTHHHHHHHHHTHHHHHHSCCSTTCSSTTTSHHHHHHHHHHHHSCCCSSCGGGGGT
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCCHHHC
T ss_conf 93568689999999999988488799999999999888743467899997244169999999998268999987112110
Q ss_pred --------E
Q ss_conf --------8
Q 001511 467 --------K 467 (1064)
Q Consensus 467 --------~ 467 (1064)
-
T Consensus 401 ~~~~~~~~~ 409 (409)
T d2g0da1 401 LFDDFLKGG 409 (409)
T ss_dssp CCTTTTTCC
T ss_pred CCCCCCCCC
T ss_conf 456234488
|
| >d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini [TaxId: 2094]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Arginine deiminase domain: Arginine deiminase species: Mycoplasma arginini [TaxId: 2094]
Probab=100.00 E-value=0 Score=30869.36 Aligned_cols=1 Identities=0% Similarity=-1.853 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~v~SE~g~Lk~V~vhrPg~e~~~l~P~~~~~~lfd~~~~~~~a~~Ehd~f~~~L~~~Gv~V~~l~~ll~e 80 (409)
T d1s9ra_ 1 SVFDSKFKGIHVYSEIGELESVLVHEPGREIDYITPARLDELLFSAILESHDARKEHKQFVAELKANDINVVELIDLVAE 80 (409)
T ss_dssp CCSCTTCCSCBBCCSSSCEEEEEECCCCGGGGGCCGGGHHHHTCSSCCCHHHHHHHHHHHHHHHHTTTCEEEEHHHHHHH
T ss_pred CCCCCCCCCCEEECCCCCCCEEEECCCCHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHH
T ss_conf 93113778641577700131799769848987269311577514777799999999999999999789889983786876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~g~~~~e~~~~~~~~~~~~plpn~~F~RD 160 (409)
T d1s9ra_ 81 TYDLASQEAKDKLIEEFLEDSEPVLSEEHKVVVRNFLKAKKTSRELVEIMMAGITKYDLGIEADHELIVDPMPNLYFTRD 160 (409)
T ss_dssp HHHHSCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHTCSSHHHHHHHHHHCEEHHHHTCCCSSSEEECCCGGGGCTTS
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCHHCCC
T ss_conf 55407999999999863101134454768888999986048889999988524515442555676334678755200057
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~gvil~~m~~~~R~~E~~~~~~i~~~~~~~~~~~~~~~~~~~~~~EGGD~l~~g~~~~~iG~s~RTn~~gie~L 240 (409)
T d1s9ra_ 161 PFASVGNGVTIHYMRYKVRQRETLFSRFVFSNHPKLINTPWYYDPSLKLSIEGGDVFIYNNDTLVVGVSERTDLQTVTLL 240 (409)
T ss_dssp SEEEEBTEEEECCCSSHHHHTTHHHHHHHHHHCTTTTTCCEEECGGGCSCCCGGGEEECSSSEEEEEESSSCCHHHHHHH
T ss_pred CEEEECCCEEECCCCCHHHCCCHHHHHHHHHHCHHHCCCCEEEECCCCCCCCCCCEEEECCCEEEEEECCCCCHHHHHHH
T ss_conf 43687486897899984665477999999984844349855972687664556747998996799997876798999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~L~~~~~~~~~~v~~~~~p~~~~~mHLDt~f~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (409)
T d1s9ra_ 241 AKNIVANKECEFKRIVAINVPKWTNLMHLDTWLTMLDKDKFLYSPIANDVFKFWDYDLVNGGAEPQPVENGLPLEGLLQS 320 (409)
T ss_dssp HHHHHHCTTCCCCEEEEEECCCBTTBCSGGGTEEECSSSEEEECGGGTTTCEEEEEETTTSCSSCCCEEECCCHHHHHHH
T ss_pred HHHHHHCCCCEEEEEEEECCCCCCCCEEECCCEEECCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99863447712689875047886552233560243279849982543564220012203676654101210338999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~i~~~~~~~~~~~~~~E~~~~~~N~L~l~p~~Vi~~~~~~~~~~~L~~~Gievi~i~~~el~~~gGg~hCmT~ 400 (409)
T d1s9ra_ 321 IINKKPVLIPIAGEGASQMEIERETHFDGTNYLAIRPGVVIGYSRNEKTNAALEAAGIKVLPFHGNQLSLGMGNARCMSM 400 (409)
T ss_dssp HHSSCCEEEETTCTTCCHHHHHHHHHTTTTCCEEEETTEEEEETTCHHHHHHHHHTTCEEEEECCHHHHTTSCCTTTTCE
T ss_pred HHCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCEEEEECCCHHHHHHHHHCCCEEEEECHHHHHCCCCCCEECCC
T ss_conf 74799808984688764566655540574049997799899858869999999978899999673785327998777870
Q ss_pred --------E
Q ss_conf --------8
Q 001511 467 --------K 467 (1064)
Q Consensus 467 --------~ 467 (1064)
-
T Consensus 401 pl~Re~v~~ 409 (409)
T d1s9ra_ 401 PLSRKDVKW 409 (409)
T ss_dssp EEEECCCCC
T ss_pred CCEECCCCC
T ss_conf 345279899
|
| >d1dkla_ c.60.1.2 (A:) Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate mutase-like superfamily: Phosphoglycerate mutase-like family: Histidine acid phosphatase domain: Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=30866.40 Aligned_cols=1 Identities=0% Similarity=-1.390 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~p~~~L~~V~il~RHG~R~P~~~~~~~~~~~~~~~~~~~~~~G~LT~~G~~q~~~lG~~lr~~Y~~~~~~~~~~~~~~~ 80 (409)
T d1dkla_ 1 SEPELKLESVVIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSG 80 (409)
T ss_dssp CCSCEEEEEEEEEEECCCBCCCCCCHHHHHTCSSCCCCCSSCTTSBCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCCCTT
T ss_pred CCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99888898999997188899999866557688433557999930526999999999999999998774367887778712
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~i~vrSt~~~Rt~~SA~afl~Gl~p~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (409)
T d1dkla_ 81 QVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQT 160 (409)
T ss_dssp TEEEEECSSHHHHHHHHHHHHHHSTTCCCCEECCSCTTSCCGGGCTTTTTSSCCCHHHHHHHHHHHTTSSHHHHHHTTHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 06987279729999999999852788676655445556667566777577667536777789987745647778899889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~ 240 (409)
T d1dkla_ 161 AFRELERVLNFPQSNLCLKREKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSH 240 (409)
T ss_dssp HHHHHHHHHTGGGSHHHHTC-----CCCHHHHSCCCEEEETTEEEECHHHHHHHHHHHHHHHHHHHTCSSGGGGTCCSHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHH
T ss_conf 99999999721121037877510037889999899988640477767726667659999999998599972110357799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~k~~l~s~HD~ti~~ll~aLgl~~~~~ 320 (409)
T d1dkla_ 241 QWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGGALELNWTLP 320 (409)
T ss_dssp HHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHSCCCCEECGGGCEESCSEEEEEECHHHHHHHHHHHTCCCCBT
T ss_pred HHHHHHHHHHHHHEECCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCC
T ss_conf 99999999998650005887899873668999999999876404555678888638999568414999999819853456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~p~as~~~~El~~~~~~~~~~vrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gC~~~~~~~~C~l~~F~~~~~ 400 (409)
T d1dkla_ 321 GQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVN 400 (409)
T ss_dssp TBSCSSCTTCEEEEEEEEETTTTEEEEEEEEEECCHHHHHTTCCCCSSSCCEEEECCCTTCCCBCTTSCEEHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 66899997663899999846999725999995376201245665201025775046479998889999368999999999
Q ss_pred --------E
Q ss_conf --------8
Q 001511 467 --------K 467 (1064)
Q Consensus 467 --------~ 467 (1064)
-
T Consensus 401 ~~~~p~c~~ 409 (409)
T d1dkla_ 401 EARIPACSL 409 (409)
T ss_dssp HHSCGGGCC
T ss_pred HHHHHHCCC
T ss_conf 775021279
|
| >d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Halothermothrix orenii [TaxId: 31909]
Probab=100.00 E-value=0 Score=30868.32 Aligned_cols=1 Identities=0% Similarity=0.702 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
|
T Consensus 1 ~~k~~v~Y~~~~~~f~d~~~~~~Gd~~g~~~kLdyl~~~~~~~i~~LGv~~i~l~Pi~~~~~~~GY~~~d~~~vd~~~G~ 80 (409)
T d1wzaa2 1 FEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPSYHGYDVTDYYKINPDYGT 80 (409)
T ss_dssp CCCCCCEEEECGGGSCCSSSSSCCCHHHHHHTHHHHCCSCTTCCSSCCCSEEEECCCEECSSSSCCSCSEEEEECGGGCC
T ss_pred CCCCCEEEEEECCHHCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98761799996412137999987489999975533210022277616866799798887989888684567875834599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~dlk~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (409)
T d1wzaa2 81 LEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYYGY 160 (409)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCCSCCCCCBCSSSCBCSEEEETTEEEECS
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999866988998213344445673123331146553345322356444567654579853322346664466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~dln~~n~~vr~~~~~~~~~wi~~gVDGfR~D~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~ 240 (409)
T d1wzaa2 161 FWSGMPDLNYNNPEVQEKVIGIAKYWLKQGVDGFRLDGAMHIFPPAQYDKNFTWWEKFRQEIEEVKPVYLVGEVWDISET 240 (409)
T ss_dssp SCTTSCBBCTTSHHHHHHHHHHHHHHHHTTCCEEEEECCCTTSCGGGTTHHHHHHHHHHHHHTTTSCCEEEEECCSCHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCHHHCCCCHHCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf 77887620325689999999999999982987212253532166032020068999999740037880799986037521
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nhD~~r~~~~~~~~~~~~~~ 320 (409)
T d1wzaa2 241 VAPYFKYGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNYIDAPFLTNHDQNRILDQLGQDRNKARV 320 (409)
T ss_dssp HGGGGTTTCSEEBCHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHTCTTSCCCBCBSCCTTSCCHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 13444202232012468999988774167521678877777766543002456556312455567310002786678999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~lt~pG~P~iy~G~E~G~~~~~~~~~~R~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~Li~l 400 (409)
T d1wzaa2 321 AASIYLTLPGNPFIYYGEEIGMRGQGPHEVIREPFQWYNGSGEGETYWEPAMYNDGFTSVEQEEKNLDSLLNHYRRLIHF 400 (409)
T ss_dssp HHHHHTTSSSCCEEETTGGGTCCCCSSHHHHTCCCCCSSSCCTTCCCSSCCTTTTTTCCHHHHTTCTTSHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999838998799558653766899986546788777788888776775555655468998863748999999999999
Q ss_pred --------E
Q ss_conf --------8
Q 001511 467 --------K 467 (1064)
Q Consensus 467 --------~ 467 (1064)
+
T Consensus 401 Rk~~pal~s 409 (409)
T d1wzaa2 401 RNENPVFYT 409 (409)
T ss_dssp HHHCTHHHH
T ss_pred HHHCCHHCC
T ss_conf 960813039
|
| >d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Family 10 polysaccharide lyase family: Family 10 polysaccharide lyase domain: Polygalacturonic acid lyase (pectate lyase) species: Azospirillum irakense [TaxId: 34011]
Probab=100.00 E-value=0 Score=30799.22 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~a~~~t~ar~~~~p~~~~aAw~~y~a~s~~~~~a~~~~~~a~~~~g~~~p~~p~~~~~~~~~~l~~~~~wy~s 80 (408)
T d1r76a_ 1 AVIGMNEAASALTPSRVSSLPDTQRAAWQEYLARSEAQLSRDKASLAAELAPGQPLPPPPAEGKGADTMPLDKPAAWYTS 80 (408)
T ss_dssp CCCEECCCCCCCCHHHHSSCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCCCCCCSCCGGGSCSSSCGGGGGS
T ss_pred CCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 95554541011687776369878888986436665556766776666653248878999986643033671467444577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~eA~~iAd~lL~~Q~p~GGWpKn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiDN~aTt~el~~La~ 160 (408)
T d1r76a_ 81 KAARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQ 160 (408)
T ss_dssp HHHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 79999999999853447998776653200110102232210134455300144555542246788686248999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~y~~a~~~~~~~ll~~Q~~~Ggwpqf~p~~~~Y~~~ItfND~~m~~~l~~l~~~~~~~~~~~~~~~~~r 240 (408)
T d1r76a_ 161 VVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIR 240 (408)
T ss_dssp HHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99973763214699999999999997317799964437887552343112755899799999999973465344787889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~r~~~a~~rgi~~ll~~Q~~~gg~~~~Wg~Qhd~~tl~P~~aR~yE~~sls~~eS~~i~~~LM~~~~ps~~~~~aI~~av 320 (408)
T d1r76a_ 241 TRALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGV 320 (408)
T ss_dssp HHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999999999987610488867486525835567344336677264003189999999717777755999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~lwaRfyel~tn~P~f~~Rd~~~~~~~~ei~~err~gy~w~~~~~~~~~~~ 400 (408)
T d1r76a_ 321 AWLNTSVIRDRAWVKSDQGYQLVTEQGAKPLWSRFYSLDGNKPVFGDRDKTIHDDVMGISQERRTGYAWYTTSPQKALSA 400 (408)
T ss_dssp HHHHHSCCCC---------------CCSSCCEESEECSSSCCBCEECTTSEEESCGGGSCHHHHSSSCCEESTTHHHHHH
T ss_pred HHHHHCCCCCCEEEECCCCCEEEECCCCCCCCEEEEECCCCCEEEECCCCCEECCHHHCCHHHCCCCCCCCCCHHHHHHH
T ss_conf 99986646785355348884242089998533256775899624657998653477662097628702427776999998
Q ss_pred -------E
Q ss_conf -------8
Q 001511 467 -------K 467 (1064)
Q Consensus 467 -------~ 467 (1064)
+
T Consensus 401 y~~w~~~~ 408 (408)
T d1r76a_ 401 FTKWEKRS 408 (408)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHCC
T ss_conf 89987449
|
| >d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Adenylosuccinate lyase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=30798.30 Aligned_cols=1 Identities=0% Similarity=-1.623 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 em~~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~a~~~~L~e~~g~~~~~v 80 (408)
T d1f1oa_ 1 EMSAIWTDENRFQAWLEVEILACEAWAELGVIPKEDVKVMRENASFDINRILEIEKDTRHDVVAFTRAVSESLGEERKWV 80 (408)
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 94787790799999999999999999877999999999999847677999998874538858999999998738646341
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 H~G~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rL 160 (408)
T d1f1oa_ 81 HYGLTSTDVVDTALSYLLKQANDILLKDLERFVDIIKEKAKEHKYTVMMGRTHGVHAEPTTFGLKLALWHEEMKRNLERF 160 (408)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 67887899998999999998488888899999999999999828860146675177777408899999999999879999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~lGGA~Gt~~~~~~~~~~~~~~~lg~~~~~~~~~~~~rd~~~e~~~~l~~la~~l~kia~Dl~~~~s~~~ 240 (408)
T d1f1oa_ 161 KQAKAGIEVGKISGAVGTYANIDPFVEQYVCEKLGLKAAPISTQTLQRDRHADYMATLALIATSIEKFAVEIRGLQKSET 240 (408)
T ss_pred HHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99987650124460431346788558999999846767872278887788999987999999999987789998871344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~e~~~~~~~GSSiMP~K~NP~~~E~v~~~~~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~ 320 (408)
T d1f1oa_ 241 REVEEFFAKGQKGSSAMPHKRNPIGSENMTGMARVIRGYMMTAYENVPLWHERDISHSSAERIILPDATIALNYMLNRFS 320 (408)
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 61440366789875200035564079999987601111378998726431200304567776214009999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~l~~l~vn~e~m~~nl~~~~~~~~a~~~~~~Lv~~gl~~~~Ah~~v~~~~~~a~~~~~~l~e~l~~~~~i~~~Ls~eel 400 (408)
T d1f1oa_ 321 NIVKNLTVFPENMKRNMDRTLGLIYSQRVLLALIDTGLTREEAYDTVQPKAMEAWEKQVPFRELVEAEEKITSRLSPEKI 400 (408)
T ss_pred HHHHCCEECHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHCCCCHHHH
T ss_conf 87637865799999999730472689999999998299989999999999999999798899998706786668999999
Q ss_pred -------E
Q ss_conf -------8
Q 001511 467 -------K 467 (1064)
Q Consensus 467 -------~ 467 (1064)
.
T Consensus 401 ~~~lDp~~ 408 (408)
T d1f1oa_ 401 ADCFDYNY 408 (408)
T ss_pred HHHCCCCC
T ss_conf 98659998
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30795.79 Aligned_cols=1 Identities=100% Similarity=1.732 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~ 80 (408)
T d1n11a_ 1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN 80 (408)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
T ss_conf 98699999884899999999787899988999988999999868899999999885998877999899999999869977
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~ 160 (408)
T d1n11a_ 81 MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA 160 (408)
T ss_dssp HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 99999874100123211122024555430332222222211001001456464289999875989999999976998886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~ 240 (408)
T d1n11a_ 161 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ 240 (408)
T ss_dssp CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 78767409999998599999999986588400457789971024320210455555432001221247789999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g 320 (408)
T d1n11a_ 241 EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 320 (408)
T ss_dssp TTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT
T ss_pred HCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCCC
T ss_conf 08676754420022111112478997334543028489999999779965621023445302210058621355301333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~ 400 (408)
T d1n11a_ 321 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRM 400 (408)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC----CCC
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 32234689999999999986889999999987889988799998999999983999999999998736564560003668
Q ss_pred -------E
Q ss_conf -------8
Q 001511 467 -------K 467 (1064)
Q Consensus 467 -------~ 467 (1064)
+
T Consensus 401 ~~~~~~~~ 408 (408)
T d1n11a_ 401 SFPETVDE 408 (408)
T ss_dssp CCCCCCCC
T ss_pred CCCHHCCC
T ss_conf 76410149
|
| >d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=30793.28 Aligned_cols=1 Identities=0% Similarity=0.271 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~~~~rGvNlGgWlv~E~wi~p~~f~~~~~~~~~~~~~~~de~~~~~~~G~~~~~~~~~~h~~~~ite~D~~ 80 (408)
T d1h4pa_ 1 YYDYDHGSLGEPIRGVNIGGWLLLEPYITPSLFEAFRTNDDNDEGIPVDEYHFCQYLGKDLAKSRLQSHWSTFYQEQDFA 80 (408)
T ss_dssp CCCTTSCTTSSCEEEEECTTSSSCCTTTSHHHHHTTCCCTTCCTTCCSSHHHHHHHHCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCCCCCCCCCEEEEEECCHHHCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 96666787798325886515540466667315554256666555542209999998687889999999885328899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~i~~~G~N~VRiPi~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gl~VilDlH~~pG~~~~~~~~~~~~~~~~~~~~~ 160 (408)
T d1h4pa_ 81 NIASQGFNLVRIPIGYWAFQILDDDPYVSGLQESYLDQAIGWARNNSLKVWVDLHGAAGSQNGFDNSGLRDSYKFLEDSN 160 (408)
T ss_dssp HHHHTTCCEEEEEEEGGGTCCCTTCCCCCSSHHHHHHHHHHHHHHTTCEEEEEEEECTTCSSCCGGGSSTTCCCTTSHHH
T ss_pred HHHHCCCCEEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99977998799854499934778887758158999999999999889989998378998776778877656645578168
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~ia~r~~~~~~~~~v~g~el~NEP~~~~~~~~~~~~~~~~~~~~~iR~~~~~~~~iv~~d~~~~~~~w~~~ 240 (408)
T d1h4pa_ 161 LAVTINVLNYILKKYSAEEYLDIVIGIELINEPLGPVLDMDKMKNDYLAPAYEYLRNNIKSDQVIIIHDAFQPYNYWDDF 240 (408)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHTTEEEEESCSCCCGGGSCHHHHHHHTHHHHHHHHHHTTCCCCCEEEECTTCCTTGGGGS
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHH
T ss_conf 99999999999999631345664234412567665666557789999999999998634668569980687770145554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~vv~D~H~Y~~f~~~~~~~s~~~~i~~~~~~~~~~~~~~~p~~vGEws~a~td~~~~~n~~g~~~~~~ge~~ 320 (408)
T d1h4pa_ 241 MTENDGYWGVTIDHHHYQVFASDQLERSIDEHIKVACEWGTGVLNESHWIVCGEFAAALTDCIKWLNSVGFGARYDGSWV 320 (408)
T ss_dssp SCGGGTCCSEEEEEEECSCSSHHHHTCCHHHHHHHHHHHHHHHTTCSSEEEEEEECSCSSSCSTTTTCTTCCCTTBTCCC
T ss_pred CCCCCCCCEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEECCCC
T ss_conf 26677786367610223541377556775543311433344543156885243112331104441256554430104413
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~~g~c~~~~~~~~~~~~~~~~~r~~~eaQ~~~ye~~~GW~fWt~K~e~~~~W~~~~~~~~g~iP~~~~~~~~~ 400 (408)
T d1h4pa_ 321 NGDQTSSYIGSCANNDDIAYWSDERKENTRRYVEAQLDAFEMRGGWIIWCYKTESSLEWDAQRLMFNGLFPQPLTDRKYP 400 (408)
T ss_dssp BTTBCCCBCSCCTTTTCGGGCCHHHHHHHHHHHHHHHHHHTTTTEEEESCSCCSSCSTTCHHHHHHTTSSCSSTTCCSST
T ss_pred CCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCC
T ss_conf 67767655565446677001778899999999999999984589777852137999878889999787808896124687
Q ss_pred -------E
Q ss_conf -------8
Q 001511 467 -------K 467 (1064)
Q Consensus 467 -------~ 467 (1064)
+
T Consensus 401 ~~cg~~~~ 408 (408)
T d1h4pa_ 401 NQCGTISN 408 (408)
T ss_dssp TGGGSCCC
T ss_pred CCCCCCCC
T ss_conf 75567889
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=100.00 E-value=0 Score=30793.12 Aligned_cols=1 Identities=0% Similarity=-0.726 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~a~iR~~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llg 80 (408)
T d1t3ia_ 1 PSLAATVRQDFPILNQEINGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFIN 80 (408)
T ss_dssp CCHHHHHGGGCGGGSCEETTEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 96278998758256666589986983185115799999999999998668987731519999999999999999999839
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 a~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~ 160 (408)
T d1t3ia_ 81 ARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLL 160 (408)
T ss_dssp CSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHC
T ss_pred CCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCC
T ss_conf 89821377505307898888764100226899889850354411211344433026825765420123320077764224
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~ 240 (408)
T d1t3ia_ 161 SEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEE 240 (408)
T ss_dssp CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHH
T ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHH
T ss_conf 89966999965554443358089876565214730453130104643224334678648861432357887411121033
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~ 320 (408)
T d1t3ia_ 241 ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQ 320 (408)
T ss_dssp HHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHCCCCEECCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 45308965069854344455555557733543478578999999999999999708799999999877677665225764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~~~~~~~~iv~f~~~~~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L 400 (408)
T d1t3ia_ 321 LRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSL 400 (408)
T ss_dssp EEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 23468884446754189999589899999999966996996574225587886069960999799999999999999999
Q ss_pred -------E
Q ss_conf -------8
Q 001511 467 -------K 467 (1064)
Q Consensus 467 -------~ 467 (1064)
.
T Consensus 401 ~~~~~~f~ 408 (408)
T d1t3ia_ 401 QATIRFFS 408 (408)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHC
T ss_conf 99999759
|
| >d2hhva2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment) {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: DNA polymerase I (Klenow fragment) species: Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]
Probab=100.00 E-value=0 Score=30797.30 Aligned_cols=1 Identities=100% Similarity=0.138 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~e~ll~~lE~~l~~vLa~ME~~Gi~vD~e~l~~~~~~l~~~~~~le~~i~~~~G~~fN~~S~~ql~~~Lf~~L~l~~~~ 80 (408)
T d2hhva2 1 EQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLK 80 (408)
T ss_dssp TCHHHHHTTHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 97689999988899999999984969789999999999999999999999999699679999999999999855999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~r~~~k~~~~~~~~~~~~~~~~~gRih~~~~~~gt~TGR~s~~~Pnlqn~p~ 160 (408)
T d2hhva2 81 KTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPI 160 (408)
T ss_dssp BCSSSBCCCHHHHHHHGGGCHHHHHHHHHHHHHHHHHTTTHHHHHHSCTTTCEECCEEESSCCSSSCCEEESSCTTCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCEECCEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 58788655335677750112579999999999888886533324305089985787200357654445557632146777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~r~~~~~~~g~~lv~~DysqiElRvlA~ls~D~~l~~~~~~g~D~h~~~a~~~~~~~~~~~~~~~R~~aK~~ 240 (408)
T d2hhva2 161 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAV 240 (408)
T ss_dssp SSHHHHGGGGGEECSSTTEEEEEEEESSHHHHHHHHHHTCHHHHHHHHTTCCHHHHHHHHHHTCCGGGCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHEEECCCCEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHH
T ss_conf 64335023312113047845887220215199999994888899987744215665455404777888070677889987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~fg~~YG~g~~~l~~~~~~~~~ea~~~~~~~~~~~p~i~~~~~~~~~~a~~~g~~~~~~grrr~~p~~~~~~~~~r~~~~ 320 (408)
T d2hhva2 241 NFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAE 320 (408)
T ss_dssp HHHHHHCCCHHHHHHHHTCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSEEECTTCCEEECGGGGCSSHHHHHHHH
T ss_pred HHCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHH
T ss_conf 61533245115546101222788999999998640116255789999999828875467984158865566676767888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 r~a~N~~iQgsaAdi~k~a~~~~~~~l~~~~~~~~lv~~VHDEiv~ev~~~~~~~~~~~~~~~M~~~~~l~vPl~~d~~i 400 (408)
T d2hhva2 321 RMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHY 400 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEECSSEEEEEEEGGGHHHHHHHHHHHHHTSSCCSSCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 87760011489999999999999999984489978999763105899778999999999999995476788807865044
Q ss_pred -------E
Q ss_conf -------8
Q 001511 467 -------K 467 (1064)
Q Consensus 467 -------~ 467 (1064)
+
T Consensus 401 G~~W~e~k 408 (408)
T d2hhva2 401 GSTWYDAK 408 (408)
T ss_dssp ESSTTTCC
T ss_pred CCCHHHCC
T ss_conf 78967759
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=30796.85 Aligned_cols=1 Identities=0% Similarity=-0.626 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A~l~~~~~rp~LvVt~~~~~A~~l~~dL~~~l~~~ 80 (408)
T d1c4oa1 1 TFRYRGPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRELFPEN 80 (408)
T ss_dssp CCCCCSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHHHCTTS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 96214899998779999999999866997379856888789999999999859999999189999999999999864766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~v~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVv~~~a~l~~l~~~~~~~~~~~~l~~G 160 (408)
T d1c4oa1 81 AVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRRDVIVVASVSAIYGLGDPREYRARNLVVERG 160 (408)
T ss_dssp EEEECCCGGGTSCCCEEEGGGTEEECCCCSCCHHHHHHHHHHHHHHHHCSCEEEEEEGGGCSCCCCHHHHHHCCBC----
T ss_pred CEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCHHHHHCEEEEECC
T ss_conf 45567753422575456845554444421034677764446555320467659995112321678818876114885179
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~l~~~L~~~gY~r~~~V~~~GefsvRG~IlDIfp~~~~~P~RIeffgDeIdsIr~Fd~~tQrs~~~~~~~~i~P 240 (408)
T d1c4oa1 161 KPYPREVLLERLLELGYQRNDIDLSPGRFRAKGEVLEIFPAYETEPIRVELFGDEVERISQVHPVTGERLRELPGFVLFP 240 (408)
T ss_dssp --------------------------------------------------------------------------CCCBCC
T ss_pred CEEEHHHHHHHHHHHHCEECCEEECCCEEEEECCCEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEEEC
T ss_conf 89508999999997522214305336605730671276002457637899946733268997278896567655456522
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 a~e~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~Gie~yl~~f~~~~~~e~~~tL~ 320 (408)
T d1c4oa1 241 ATHYLSPEGLEEILKEIEKELWERVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARYFTGKAPGEPPYTLL 320 (408)
T ss_dssp SCSCCCCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCCTTGGGGHHHHHTCCTTSCCCCGG
T ss_pred CCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHH
T ss_conf 41110135578888876566899999998737416777799999988877875188765777799865778899852466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 DYlp~~~lv~~De~~~~~~~~~~~~~e~~e~~~~lle~g~~lP~~~d~~~L~~ee~~~~~~q~i~~S~~p~~~e~~~~~~ 400 (408)
T d1c4oa1 321 DYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAHSGR 400 (408)
T ss_dssp GGSCTTCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHHHHHCSE
T ss_pred HHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCHHHCCCCC
T ss_conf 51687508999582877999999998899999868757867885434798899999985598899808998422306885
Q ss_pred -------E
Q ss_conf -------8
Q 001511 467 -------K 467 (1064)
Q Consensus 467 -------~ 467 (1064)
-
T Consensus 401 ive~~~Rp 408 (408)
T d1c4oa1 401 VVEQIIRP 408 (408)
T ss_dssp EEEECSCT
T ss_pred EEEEEECC
T ss_conf 47996088
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=0 Score=30722.70 Aligned_cols=1 Identities=0% Similarity=-1.689 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~p~~~~~p~p~~rp~~~~d~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~vrvld~~g~~~~~~~~~l~~e~l~~~y 80 (407)
T d1qs0a_ 1 NEYAPLRLHVPEPTGRPGCQTDFSYLRLNDAGQARKPPVDVDAADTADLSYSLVRVLDEQGDAQGPWAEDIDPQILRQGM 80 (407)
T ss_dssp CCSCCCCCCCCCCSCCTTSCCCGGGSCCCCTTCSCCCCTTCCGGGGHHHHTSCBCCBCTTSCBCSGGGSSCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99898545799999999988885445568876679995568911244245670899899998998778998999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 r~M~~~R~~d~~~~~l~rqG~i~~~~~~~GqEA~~vg~~~aL~~~D~~f~~yR~~g~~larG~~~~~~~~e~~g~~~g~~ 160 (407)
T d1qs0a_ 81 RAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPL 160 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEEECCSSCHHHHHHTTCCHHHHHHHHHTCTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999999669730668998849999999986797798982545799999987619999999862457877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~Gr~~~~h~~~~~~~~~~~s~~vg~q~p~AvG~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvifv~eN 240 (407)
T d1qs0a_ 161 KGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVN 240 (407)
T ss_dssp TTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 78875443355323200025653346623356677776516760101245655433201888999873057626999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 N~~aist~~~~~~~~~~~~~~ra~~~Gi~~~~VDGnD~~avy~a~~~A~e~aR~g~gP~lIE~~TyR~~gHs~sDD~~~Y 320 (407)
T d1qs0a_ 241 NQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKY 320 (407)
T ss_dssp CSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGT
T ss_pred ECCCCCCCCHHHHCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCC
T ss_conf 02301364111200100688888861865278625439999999998889985389746997741018988765554345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 R~~~E~~~w~~~DPI~rl~~~Li~~g~~se~e~~~i~~ei~~eV~~A~~~Ae~~~~~~~~p~P~~~~lf~~VY~e~p~~l 400 (407)
T d1qs0a_ 321 RPADDWSHFPLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVYKEMPDHL 400 (407)
T ss_dssp SCTTHHHHCTTCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCCCCSSGGGSSSSSSCCHHH
T ss_pred CCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHH
T ss_conf 89999998883897999999999879999999999999999999999999987221036899699999845225999889
Q ss_pred ------E
Q ss_conf ------8
Q 001511 467 ------K 467 (1064)
Q Consensus 467 ------~ 467 (1064)
-
T Consensus 401 ~eQ~~el 407 (407)
T d1qs0a_ 401 RRQRQEL 407 (407)
T ss_dssp HHHHHTC
T ss_pred HHHHHHC
T ss_conf 9999739
|
| >d1eu8a_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: D-maltodextrin-binding protein, MBP species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=30718.02 Aligned_cols=1 Identities=0% Similarity=1.433 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~g~i~~~~~g~p~~~~~~~~~i~~F~~~~p~i~V~~~~~~~~~~~~~~~~~~~~~a~g~~PDi~~~~~~~~~~~~~~g 80 (407)
T d1eu8a_ 1 IEEGKIVFAVGGAPNEIEYWKGVIAEFEKKYPGVTVELKRQATDTEQRRLDLVNALRGKSSDPDVFLMDVAWLGQFIASG 80 (407)
T ss_dssp CCSSEEEEEECCSHHHHHHHHHHHHHHHHHSTTCEEEEEECCSSHHHHHHHHHHHHTTTCSSEEEEEEETTTHHHHHHHT
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCC
T ss_conf 97426999978976699999999999998886918999973684599999999999828999879998948899999879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~l~dL~~~~~~~~~~~~~~~~~~~~~~~~~dG~~y~iP~~~~~~~~~yNkdl~~~~G~~~p~~T~de~~~~~~~l~~~~~ 160 (407)
T d1eu8a_ 81 WLEPLDDYVQKDNYDLSVFFQSVINLADKQGGKLYALPVYIDAGLLYYRKDLLEKYGYSKPPETWQELVEMAQKIQSGER 160 (407)
T ss_dssp CBCCSHHHHHHHTCCGGGBCHHHHHHHTEETTEECCEEEEEEECEEEEEHHHHHHTTCCSCCSBHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHCCHHHHHHCHHHHHHHHCCCCEEECCCCCHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 93338576553113255404889987513454230276301234554161255542157988899999999999873045
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 240 (407)
T d1eu8a_ 161 ETNPNFWGFVWQGKQYEGLVCDFVEYVYSNGGSLGEFKDGKWVPTLNKPENVEALQFMVDLIHKYKISPPNTYTEMTEEP 240 (407)
T ss_dssp TTCTTCEEEECCCSSSHHHHHHHHHHHHTTTCCSEEEETTEEEECTTCHHHHHHHHHHHHHHHTSCCSCGGGGTTCCHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 76775221234555544302446789984488611024677521469999999999999999705657632000001577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~f~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~i~~~s~~~~~A~~fl~~l~s~e~ 320 (407)
T d1eu8a_ 241 VRLMFQQGNAAFERNWPYAWGLHNADDSPVKGKVGVAPLPHFPGHKSAATLGGWHIGISKYSDNKALAWEFVKFVESYSV 320 (407)
T ss_dssp HHHHHHTTCEEEEEECTHHHHHHTSTTCTTTTCEEEECCCBCTTSCCCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSHHH
T ss_pred HHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCEECCCEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 99998568745742572888765320145455534411125678654311304202676787549999999874002789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~eal~~~~~~ 400 (407)
T d1eu8a_ 321 QKGFAMNLGWNPGRVDVYDDPAVVSKSPHLKELRAVFENAVPRPIVPYYPQLSEIIQKYVNSALAGKISPQEALDKAQKE 400 (407)
T ss_dssp HHHHHHHTCCCBSBTTGGGSHHHHHHCTHHHHTHHHHHTCBCCCCCTTHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHCHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999851888662777739875611967999999997285278888789999999999999985999999999999999
Q ss_pred ------E
Q ss_conf ------8
Q 001511 467 ------K 467 (1064)
Q Consensus 467 ------~ 467 (1064)
+
T Consensus 401 ~~~~l~~ 407 (407)
T d1eu8a_ 401 AEELVKQ 407 (407)
T ss_dssp HHHHHTC
T ss_pred HHHHHCC
T ss_conf 9999576
|
| >d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
Probab=100.00 E-value=0 Score=30712.47 Aligned_cols=1 Identities=0% Similarity=-1.390 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~v~Y~i~~drF~~gd~~~~~~~~~~~~~~~~~~~~~~~~gGd~~gi~~kLdyl~~LGv~~I~L~Pi~~~~~~ 80 (407)
T d1qhoa4 1 SSSASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDT 80 (407)
T ss_dssp CTTSCCTTCCEEEECGGGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCHHHHHHTHHHHHHHTCCEEEECCCEEECSS
T ss_pred CCCHHHCCCEEEEECHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 97132057779996355506799877766555455577655667657848999998799999769988996965207765
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~gY~~~d~~~id~~~Gt~~d~k~Lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (407)
T d1qhoa4 81 LAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYF 160 (407)
T ss_dssp CSSTTCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEEBTTBTTSTTTTCEEETTEEEECSS
T ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67889988774012224777778998899999999866302113331201455677622222223676556676555555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~w~~~gvDGfR~D~~~~~~~~f~~~ 240 (407)
T d1qhoa4 161 DDATKGYFHHNGDISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVAHGADGLRIDAVKHFNSGFSKS 240 (407)
T ss_dssp SCTTTCCBCCSCBCSCTTCHHHHHHSBCEETTTEEEEEBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 65555422246777786645342234456776655700332025678999876777865315643101101251467899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~i~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (407)
T d1qhoa4 241 LADKLYQKKDIFLVGEWYGDDPGTANHLEKVRYANNSGVNVLDFDLNTVIRNVFGTFTQTMYDLNNMVNQTGNEYKYKEN 320 (407)
T ss_dssp HHHHHHHHCCCEEEECCCCCCTTSTTHHHHHHHHHHSSCEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHCTTGGG
T ss_pred HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99999742685345565588735667777631135665412102577888887640220146788999875201345202
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~f~~nHD~~R~~~~~~~~~~~~~a~a~ll~~pGiP~iyyGdE~G~~g~~d~~~r~~~~~~~~~~~~~~~~~~L~~lR~ 400 (407)
T d1qhoa4 321 LITFIDNHDMSRFLSVNSNKANLHQALAFILTSRGTPSIYYGTEQYMAGGNDPYNRGMMPAFDTTTTAFKEVSTLAGLRR 400 (407)
T ss_dssp CEECSCCTTSCCHHHHCCCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTTTCCCCCCCCTTSHHHHHHHHHHHHHH
T ss_pred HCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 12000368854401124899999999999997279868863874397899895410137866688599999999999985
Q ss_pred ------E
Q ss_conf ------8
Q 001511 467 ------K 467 (1064)
Q Consensus 467 ------~ 467 (1064)
-
T Consensus 401 ~~paLr~ 407 (407)
T d1qhoa4 401 NNAAIQY 407 (407)
T ss_dssp HCHHHHH
T ss_pred HCHHHCC
T ss_conf 0984474
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=30644.78 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 80 (406)
T d1u2za_ 1 SSTFVDWNGPCLRLQYPLFDIEYLRSHEIYSGTPIQSISLRTNSPQPTSLTSDNDTSSVTTAKLQSILFSNYMEEYKVDF 80 (406)
T ss_dssp CCBSSCTTSCEEECCSCCBCHHHHHHCCCCCCCCCCGGGCCC------------------EEEEECSSCTTCEEEEECCS
T ss_pred CCCCCCCCCCCCCCCCCEECHHHHHHHHHCCCCCCCCCCEECCCCCHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEEEC
T ss_conf 97532587743465553020665310553379877772000477771443068876898605887324666103788850
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~p~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~i~~~~~~~~~~~l~~~~ 160 (406)
T d1u2za_ 81 KRSTAIYNPMSEIGKLIEYSCLVFLPSPYAEQLKETILPDLNASFDNSDTKGFVNAINLYNKMIREIPRQRIIDHLETID 160 (406)
T ss_dssp SSCCSSSCHHHHHHHHHHHHHHTTCCTTHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 56524569899999999999986488489999999999999998742799999999999999999866615988876267
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~i~~~~y~r~v~p~~~~L~~Y~~fs~~vYGEl~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~ 240 (406)
T d1u2za_ 161 KIPRSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGC 240 (406)
T ss_dssp EEEHHHHHHHHHHHHHHHTGGGGGGGCSCCSSGGGCCCCBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf 88889999998886446036886776266789977403478899999999838999998996789875999999997699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~ 320 (406)
T d1u2za_ 241 ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKIL 320 (406)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 76999848999999999999987555555303566520334404221654224545643999733167367999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 r~LKPGGrIVs~~~~~~~~~~it~r~~~~~~~il~v~~~~~~~~sVSWt~~~v~yyl~tv~~~i~~~~f~~~~~~R~~r~ 400 (406)
T d1u2za_ 321 QTAKVGCKIISLKSLRSLTYQINFYNVENIFNRLKVQRYDLKEDSVSWTHSGGEYYISTVMEDVDESLFSPAARGRRNRG 400 (406)
T ss_dssp TTCCTTCEEEESSCSSCTTCCCCSSSTTCGGGGEEEEEEECCTTCBTTBSSCCEEEEEEECSSCCGGGSCCC------C-
T ss_pred HHCCCCCEEEEECCCCCCCHHHHHHCCCCCHHCCCCHHHCCCCCCCEEECCCCCEEHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 72699828999114678740145520353000033132145336633466987653739998888721462113553347
Q ss_pred -----E
Q ss_conf -----8
Q 001511 467 -----K 467 (1064)
Q Consensus 467 -----~ 467 (1064)
+
T Consensus 401 ~P~kyt 406 (406)
T d1u2za_ 401 TPVKYT 406 (406)
T ss_dssp --CCBC
T ss_pred CCCCCC
T ss_conf 888889
|
| >d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: Catalase-peroxidase KatG domain: Catalase-peroxidase KatG species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=100.00 E-value=0 Score=30643.15 Aligned_cols=1 Identities=0% Similarity=-0.892 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~y~~~~~~~d~~~~~~di~~l~~~~~~~wpaD~g~~gP~lVRlAWHs 80 (406)
T d1itka1 1 KRPKSNQDWWPSKLNLEILDQNARDVGPVEDDFDYAEEFQKLDLEAVKSDLEELMTSSQDWWPADYGHYGPLFIRMAWHS 80 (406)
T ss_dssp CCCCCHHHHCTTSCCTHHHHTTSCCCSSCCTTCCHHHHHHHCCHHHHHHHHHHHHTCCBTTBCCGGGCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99986566586444773245687667989988678999876449999999999974433357544466313676555553
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 AgTYR~sD~RGGanGariRfaPe~sW~~N~~LdkAr~lLepIK~kyg~~IS~ADLivLAG~vAiE~~ggp~i~f~~GR~D 160 (406)
T d1itka1 81 AGTYRTADGRGGAAGGRQRFAPINSWPDNANLDKARRLLLPIKQKYGQKISWADLMILAGNVAIESMGFKTFGYAGGRED 160 (406)
T ss_dssp HTTCCTTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHHTHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCCCSCCCBCCCC
T ss_pred HCCEECCCCCCCCCCCEECCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHEEHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 10011257888998762575666266777422999999999998627355443042000155564426863224557765
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 a~~~~~d~~~g~~~e~~~d~~~~~~~~l~~pl~a~~~~liyv~Peg~~g~~d~~~~a~~lrd~f~rMgl~d~E~VALigG 240 (406)
T d1itka1 161 AFEEDKAVNWGPEDEFETQERFDEPGEIQEGLGASVMGLIYVNPEGPDGNPDPEASAKNIRQTFDRMAMNDKETAALIAG 240 (406)
T ss_dssp CSSCCTTCCCCSCSSTTCCCSCSSTTCCCTTCSCSSTTCSSSCTTCGGGCCCHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf 55655554557655656666677655555430013235555688665677884115899999999824881999998750
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~htlG~~hg~~~~~~~~g~~Pe~~~~~~~g~g~~~~~~~g~g~~~~~sG~~G~wT~~p~~~~N~yF~~Ll~~~w~~~~s~ 320 (406)
T d1itka1 241 GHTFGKVHGADDPEENLGPEPEAAPIEQQGLGWQNKNGNSKGGEMITSGIEGPWTQSPTEWDMGYINNLLDYEWEPEKGP 320 (406)
T ss_dssp HTTSCEECBSSCHHHHBCCCGGGSCGGGTTCCCCBCC-------CBSSSCCEESSSSTTSCSSHHHHHHHHSCEEEEECT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEECC
T ss_conf 24246335788743357878655544346764457888775765545775544455434345612100135565410036
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~g~~~~~~~~~~~~~~~pda~~~~~~~~~~ml~tDlaL~~Dp~~R~iaE~YA~d~e~F~~DFa~Aw~KL~~~D~gp~~ry 400 (406)
T d1itka1 321 GGAWQWAPKSEELKNSVPDAHDPDEKQTPMMLTTDIALKRDPDYREVMETFQENPMEFGMNFAKAWYKLTHRDMGPPERF 400 (406)
T ss_dssp TSCEEEEESSSTTTTCEECSSCTTCEECCCBCHHHHHHHHSHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGGC
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 77437526776544577756566775577503667876009878999999960999999999999999972678983345
Q ss_pred -----E
Q ss_conf -----8
Q 001511 467 -----K 467 (1064)
Q Consensus 467 -----~ 467 (1064)
-
T Consensus 401 ~gp~~p 406 (406)
T d1itka1 401 LGPEVP 406 (406)
T ss_dssp BSTTCC
T ss_pred CCCCCC
T ss_conf 799999
|
| >d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: Catalase-peroxidase KatG domain: Catalase-peroxidase KatG species: Burkholderia pseudomallei [TaxId: 28450]
Probab=100.00 E-value=0 Score=30643.13 Aligned_cols=1 Identities=0% Similarity=-1.191 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~wp~~~~~~~l~~~~~~~~p~~~~~~y~~~~~~lD~~alk~di~~l~~~s~d~wpaD~G~ygp~lVRlAWHsA 80 (406)
T d1mwva1 1 NGTSNRDWWPNQLDLSILHRHSSLSDPMGKDFNYAQAFEKLDLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSA 80 (406)
T ss_dssp CCCCHHHHCTTSCCGGGGSCSCGGGCCSCTTCCHHHHHHTSCHHHHHHHHHHHHTCCBTTBCCGGGCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99886666831138741356876569898887789998750599999999999745321475534662168998888763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 gTYR~~D~RGGanGg~iRfaPe~sW~~N~~Ldkar~lLepIK~ky~~~IS~ADLivLAG~vAiE~~Gg~~i~f~~GR~d~ 160 (406)
T d1mwva1 81 GTYRTADGRGGAGEGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADT 160 (406)
T ss_dssp TTCCTTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHHTHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCCCCCCCBCCCCC
T ss_pred CCCCCCCCCCCCCCCEECCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCCCC
T ss_conf 24104579889987615775443578754679999999999997477754233256620788987369813777676664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Plaa~~~gliyvnpeg~~g~pd~~~~a~~lrd~f~rMglnd~E~vAL 240 (406)
T d1mwva1 161 WEPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGNPDPVAAARDIRDTFARMAMNDEETVAL 240 (406)
T ss_dssp SSCCCCCCCSCSSTTCCTTSTTCSEETTTEECTTCCSSSTTCSSSCTTSGGGCCCHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 33223556644443454456544566753334764444456666687645688970235899999987606870889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 i~G~HtlG~~hg~~~~~~~g~~pe~~~~~~~g~gw~~~~~~g~~~~~~~sg~eG~wT~~P~~~dN~yF~~Ll~~~we~~~ 320 (406)
T d1mwva1 241 IAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYRTGKGADAITSGLEVTWTTTPTQWSHNFFENLFGYEWELTK 320 (406)
T ss_dssp HHHHTTSCBCCBSSCGGGBCCCGGGSCGGGTTCCCCBCSTTSSGGGCBSSSCCCBCCSCTTSCCSHHHHHHHHSCEEEEE
T ss_pred HHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCEEEC
T ss_conf 86432211135788510047754567510025666666554577766778873676799761116888656447645520
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 s~~g~~q~~~~~~~~~~pda~~~s~~~~~~ml~tDlal~~Dp~~R~iaE~YA~d~e~F~~dFa~AW~KLm~~Dmgp~~~y 400 (406)
T d1mwva1 321 SPAGAHQWVAKGADAVIPDAFDPSKKHRPTMLTTDLSLRFDPAYEKISRRFHENPEQFADAFARAWFKLTHRDMGPRARY 400 (406)
T ss_dssp CTTCCEEEEETTCCSCEECSSCTTCEECCEECHHHHHHHHSHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGGC
T ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHC
T ss_conf 45655245645755577766588777476402443333029888999999962999999999999999974688980202
Q ss_pred -----E
Q ss_conf -----8
Q 001511 467 -----K 467 (1064)
Q Consensus 467 -----~ 467 (1064)
-
T Consensus 401 ~g~~~p 406 (406)
T d1mwva1 401 LGPEVP 406 (406)
T ss_dssp BSTTCC
T ss_pred CCCCCC
T ss_conf 699999
|
| >d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: Catalase-peroxidase KatG domain: Catalase-peroxidase KatG species: Synechococcus sp. pcc 7942 [TaxId: 1140]
Probab=100.00 E-value=0 Score=30642.38 Aligned_cols=1 Identities=0% Similarity=-0.892 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~wp~~~~~~~l~q~~~~~~p~~~~~~y~~~~~~ld~a~k~Dl~~l~~~s~~~wpaD~G~ygP~lVRlAWhsAgTYR 80 (406)
T d1ub2a1 1 STAEWWPKALNLDILSQHDRKTNPMGPDFNYQEEVQKLDAALKQDLQALMTDSQDWWPADWGHYGGLMIRLTWHAAGTYR 80 (406)
T ss_dssp CTTSSCTTSCCGGGGSCSCTTTCCSCTTCCHHHHHTTSCSTTHHHHHHHTTCCCTTSCCGGGCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 97555887768521015887679899997889999999999999999997455234755457621377865554014321
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~sD~RGGanGgriRfaP~~sW~~N~~LdkAr~lL~pIK~ky~~~IS~ADLivLAG~vAiE~agg~ti~f~~GR~Da~~~~ 160 (406)
T d1ub2a1 81 IADGRGGAGTGNQRFAPLNSWPDNTNLDKARRLLWPIKQKYGNKLSWADLIAYAGTIAYESMGLKTFGFAFGREDIWHPE 160 (406)
T ss_dssp TTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHHTHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCSSCC
T ss_pred CCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 67898899877446822304566318899999998887642876531137776129999873498335677766666776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~dv~~g~~~e~l~~~~~~~~~~~~~~~l~~pl~a~~~~liyvnP~g~~g~pd~~~~a~~ir~~f~rM~mnd~E~vAL~aG 240 (406)
T d1ub2a1 161 KDIYWGPEKEWFPPSTNPNSRYTGDRELENPLAAVTMGLIYVNPEGVDGNPDPLKTAHDVRVTFARMAMNDEETVALTAG 240 (406)
T ss_dssp TTCCCCSCSSSSCCSSSTTCSEETTTEECTTCCSSSTTCSSCCTTSBTTBCCHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 55455554455788767544467754322465420157311177534678974555788655677753788998642153
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~ht~Gk~hg~~~~~~~g~~p~g~~~e~~g~~~~n~~~~g~g~~t~tSg~eg~wt~~p~~~dn~yF~~ll~~~~W~~~ks~ 320 (406)
T d1ub2a1 241 GHTVGKCHGNGNAALLGPEPEGADVEDQGLGWINKTQSGIGRNAVTSGLEGAWTPHPTQWDNGYFAVCSLNYDWELKKNP 320 (406)
T ss_dssp HHTSCCBCBCSCSTTBCCCGGGSCGGGTTCCSCBCSSCCSGGGCBSSSCCBBSSSCTTSCSSTTTTTTTSSSCEEEEECT
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHCCCCC
T ss_conf 31002136777501237655565410067766777773646666688888777656443467412333205640102453
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~ga~q~~~~~~~~~~~~~~~~d~s~~~~~~mt~tDLal~~Dp~~R~iaE~Ya~d~e~F~~dFa~AW~KL~~~Dmgp~~~~ 400 (406)
T d1ub2a1 321 AGAWQWEPINPREEDLPVDVEDPSIRRNLVMTDADMAMKMDPEYRKISERFYQDPAYFADVFARAWFKLTHRDMGPKARY 400 (406)
T ss_dssp TSCEEEEESSCCGGGSCBCSSCTTSBCCBCBCHHHHHHHHSHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGGC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHC
T ss_conf 30114455675323477755477777577503567763108878999999971999999999999999971677976531
Q ss_pred -----E
Q ss_conf -----8
Q 001511 467 -----K 467 (1064)
Q Consensus 467 -----~ 467 (1064)
-
T Consensus 401 ~g~~~p 406 (406)
T d1ub2a1 401 IGPDVP 406 (406)
T ss_dssp BSTTCC
T ss_pred CCCCCC
T ss_conf 799999
|
| >d1ei6a_ c.76.1.4 (A:) Phosphonoacetate hydrolase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Alkaline phosphatase-like superfamily: Alkaline phosphatase-like family: Phosphonoacetate hydrolase domain: Phosphonoacetate hydrolase species: Pseudomonas fluorescens [TaxId: 294]
Probab=100.00 E-value=0 Score=30641.80 Aligned_cols=1 Identities=0% Similarity=-0.560 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~vi~I~iD~l~~~~l~~~~~~~~TPnid~La~~G~~f~~~~~~~~~c~PsrasllTG~yp~~hG 80 (406)
T d1ei6a_ 1 TNLISVNSRSYRLSSAPTIVICVDGCEQEYINQAIQAGQAPFLAELTGFGTVLTGDCVVPSFTNPNNLSIVTGAPPSVHG 80 (406)
T ss_dssp CCEEEETTEEEECCSSCEEEEECTTCCHHHHHHHHHTTSCHHHHHGGGTSEEEEEECCSSCCHHHHHHHHHHTSCHHHHC
T ss_pred CCEEEECCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCHHHCC
T ss_conf 96484786104678998899997899978874005557991899999689348322049971589999999678988879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (406)
T d1ei6a_ 81 ICGNFFFDQETQEEVLMNDAKYLRAPTILAEMAKAGQLVAVVTAKDKLRNLLGHQLKGICFSAEKADQVNLEEHGVENIL 160 (406)
T ss_dssp CCSSEEEETTTTEEEECCSGGGCCSCCHHHHHHHTTCCEEEEESSHHHHHHHTTTCCSEEEESTTCSSCCHHHHSCCCHH
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 57775446554410100332123456544311123465302114565645555430321456567786523444543221
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~i~~l~~~~~~~~~~~d 240 (406)
T d1ei6a_ 161 ARVGMPVPSVYSADLSEFVFAAGLSLLTNERPDFMYLSTTDYVQHKHAPGTPEANAFYAMMDSYFKRYHEQGAIVAITAD 240 (406)
T ss_dssp HHHTCCCCCSSSTHHHHHHHHHHHHHHHTTCCSEEEEECCCHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 10233222123332102444432220247884201123433334456899889999999999999999867966999934
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (406)
T d1ei6a_ 241 HGMNAKTDAIGRPNILFLQDLLDAQYGAQRTRVLLPITDPYVVHHGALGSYATVYLRDAVPQRDAIDFLAGIAGVEAVLT 320 (406)
T ss_dssp CCCEECBCTTSCBCEEEHHHHHHHHHCTTSEEEECTTSCTTCCBGGGCBSEEEEEECTTSCHHHHHHHHHTSTTEEEEEE
T ss_pred CCCCCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHHHCC
T ss_conf 54345675223320232144201110110000245422210000122320234313327899999998752365223304
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~~~~~~~igdii~~sd~g~~lg~~~~~~~~s~~~~~~~~hGg~~e~~VPlIi~~P~~~~~~~~~i~~~Di~d~ 400 (406)
T d1ei6a_ 321 RSQACQRFELPEDRIGDLVVLGERLTVLGSAADKHDLSGLTVPLRSHGGVSEQKVPLIFNRKLVGLDSPGRLRNFDIIDL 400 (406)
T ss_dssp HHHHHHHHTCCGGGSCSEEEEECTTCEEESCTTTCBGGGCCSCCEECCSGGGCEEEEEESSCBCCCC--CCCBGGGHHHH
T ss_pred HHHHHHHCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEECHHHH
T ss_conf 98999973999787466999956996877455445433467767565651147308799558656777884325061887
Q ss_pred -----E
Q ss_conf -----8
Q 001511 467 -----K 467 (1064)
Q Consensus 467 -----~ 467 (1064)
.
T Consensus 401 ~~~~~~ 406 (406)
T d1ei6a_ 401 ALNHLA 406 (406)
T ss_dssp HHHCBC
T ss_pred HHHHCC
T ss_conf 763039
|
| >d2ayia1 e.60.1.1 (A:3-408) Aminopeptidase T {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Thermophilic metalloprotease-like superfamily: Thermophilic metalloprotease-like family: Thermophilic metalloprotease (M29) domain: Aminopeptidase T species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=30638.86 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~L~k~A~llV~~~l~vqkGe~VlI~a~~~~~~Lvral~e~A~~~GA~pv~v~~~d~~i~r~~~~~a~~e~l~~~p~ 80 (406)
T d2ayia1 1 AFKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVIYGDQELARKRLALAPEEGLDKAPA 80 (406)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEECCHHHHHHHHHHSCTTCTTCCCH
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCHHHHHHCCH
T ss_conf 96799999999999971268999989997166569999999999998699738996067699999996399988743624
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~a~i~I~~~np~~l~~vdp~ki~~~~ka~~~~~~~~~~~~~~~~~~W~i~~~P~~~~A~~~~~~l~~ 160 (406)
T d2ayia1 81 WLYEGMARAFREGAARLAVSGSDPKALEGLPPEKVGRAQKANARAYKPALEAITEFVTNWTIVPFAHPGWARAVFPGLPE 160 (406)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSSCBCBEECCCTTTHHHHCCCSCH
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCCH
T ss_conf 46889999997189289961698520126996899999998899879999998536566399975782177661789767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~e~~~~l~d~if~~~~ld~~dp~~~w~~~~~~l~~~~~~L~~~~~~~~~~~~~GTDL~~~i~~~~~w~~~~~~~~~g~~~ 240 (406)
T d2ayia1 161 EEAVRRLWEAIFQATRADQEDPIAAWEAHNRALHEKVAYLNARRFHALHFKGPGTDLVVGLAEGHLWQGGATATKGGRLC 240 (406)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEECCTTBCCEESSCCCSSSCCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 89999999999976346651079999999999999999985165148996389369999945884015887642278767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~NlP~GEvftaP~e~svnG~i~~d~~~~~~g~l~~~i~l~f~~G~vv~~~~~~~~~~l~~~~~~d~~a~~lgE~~ig~n 320 (406)
T d2ayia1 241 NPNLPTEEVFTAPHRERVEGVVRASRPLALGGTLVEGIFARFERGFAVEVRAEKGEEVLRRLLDTDEGARRLGEVALVPA 320 (406)
T ss_dssp CSBSSCCCEEECCCTTCEEEEEECSSCEEETTEEEBSCEEEEETTEEEEEECSBCHHHHHHHTTSSSGGGSEEEEECCCT
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCCCCCEECCCCEEEEECCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEEECC
T ss_conf 68899832585020484211998045454433303473799948879997557649999987624867636788876047
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~~~~~n~L~DE~gt~Hia~G~~Y~~~~~g~~~~~~~~~~g~n~s~~H~D~~~~~~~~~~dgv~~dG~~~~i~~ 400 (406)
T d2ayia1 321 DNPIAKTGLVFFDTLFDENAASHIAFGQAYQENLEGRPSGEAFRKRGGNESLVHVDWMIGSEEMDVDGLYEDGTRTPLMR 400 (406)
T ss_dssp TSHHHHHTCCCCCHHHHHTTSCEEEEECCCGGGBCC---CCSHHHHTCCCCSCEEEEECCCTTCEEEEECTTSCEEEEEE
T ss_pred CCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEE
T ss_conf 88540345111330587478604766876411134788756763079806644786713887178999984891889988
Q ss_pred -----E
Q ss_conf -----8
Q 001511 467 -----K 467 (1064)
Q Consensus 467 -----~ 467 (1064)
-
T Consensus 401 ~G~f~i 406 (406)
T d2ayia1 401 RGRWVV 406 (406)
T ss_dssp TTEECC
T ss_pred CCEEEC
T ss_conf 989969
|
| >d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Probab=100.00 E-value=0 Score=30634.47 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~~viY~i~~drF~~g~~~~d~~~~~~~~~~~~~~~~~gGdl~Gi~~kLd~~YLk~LGv~~I~L~Pi~ 80 (406)
T d3bmva4 1 ASDTAVSNVVNYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYLTGMGVTAIWIPQPV 80 (406)
T ss_dssp CCTTSTTCTTCCTTCCEEECCGGGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCHHHHHHHHHTSTTGGGTCCEEEECCCE
T ss_pred CCCCCCCCCCCCCCCEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCEEEECCCC
T ss_conf 98766678888753708996123306899777878876577777657667858999987448888987597789979753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~gY~~~d~~~vdp~~Gt~~dfk~LV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~ 160 (406)
T d3bmva4 81 ENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYD 160 (406)
T ss_dssp EECCCCEEETTTEEECSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEE
T ss_pred CCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCC
T ss_conf 56544567777789712127665235456844461899999999997436431365201566566522012034675356
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~~~~~giDGfR~D~~~~~~~~~~ 240 (406)
T d3bmva4 161 NGTLLGGYTNDTNGYFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWLDMGIDGIRLDAVKHMPFGWQ 240 (406)
T ss_dssp TTEEEECSTTCTTCCBCCSCBCCCSSHHHHHHSBSTTEEEBCTTSHHHHHHHHHHHHHHHHTTCCEEEESCGGGSCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 87411466545566434556764445666311245554210226689999999887777530777532245444632568
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (406)
T d3bmva4 241 KNFMDSILSYRPVFTFGEWFLGTNEIDVNNTYFANESGMSLLDFRFSQKVRQVFRDNTDTMYGLDSMIQSTASDYNFIND 320 (406)
T ss_dssp HHHHHHHHHHSCCEEEECCCCCTTCCCHHHHHHHHHSSSEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHCTTGGG
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99988888753212334333455100022110247776500122023788876405740267789987620013443344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~fl~nHD~~R~~~~~~~~~~~~a~~~~lt~pG~P~IyyGdE~g~~g~~dp~~r~~~~~~~~~~~~~~~~~~Li~lRk~ 400 (406)
T d3bmva4 321 MVTFIDNHDMDRFYNGGSTRPVEQALAFTLTSRGVPAIYYGTEQYMTGNGDPYNRAMMTSFNTSTTAYNVIKKLAPLRKS 400 (406)
T ss_dssp CEECSCCSSSCCSCCSSCSHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCCTTSHHHHHHHHHTTHHHH
T ss_pred HCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCHHHCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 32566677646660688799999999999971797777657653868998824440489877896999999999999863
Q ss_pred -----E
Q ss_conf -----8
Q 001511 467 -----K 467 (1064)
Q Consensus 467 -----~ 467 (1064)
-
T Consensus 401 ~paLry 406 (406)
T d3bmva4 401 NPAIAY 406 (406)
T ss_dssp CHHHHH
T ss_pred CHHHCC
T ss_conf 944159
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=30573.02 Aligned_cols=1 Identities=0% Similarity=1.101 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~l~~~D~ei~~~i~~e~~rq~~~l~LiaSEN~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~ 80 (405)
T d1kl1a_ 1 MKYLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQ 80 (405)
T ss_dssp CCHHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 93155549999999999999997691586067767899999856752475768899964607762299999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 lF~a~~anVqp~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~ 160 (405)
T d1kl1a_ 81 LFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKAR 160 (405)
T ss_dssp HHCCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHH
T ss_pred HHCCCCCEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCHHCCCCCHHHHHHHHH
T ss_conf 83999414414676588999999844899878873035566445676223364588877732313025313999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~aDvvt~tThKtlrGPrgg~I~~~~ 240 (405)
T d1kl1a_ 161 LHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQE 240 (405)
T ss_dssp HHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSCEEEEECH
T ss_pred HHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCEEECCHHHHHHHHHHHHCCCHHHHHHHEECCCCCCCCCCCCCEEEECC
T ss_conf 62765377523146665586999998764198786035667665443126984652110323355334677773587500
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv~ggTd~H~vlvdl~~~ 320 (405)
T d1kl1a_ 241 QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQ 320 (405)
T ss_dssp HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGG
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCCC
T ss_conf 35777776508653468415678899999998738388999999999888999998648943435887664563243446
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~~~~~~~~~~ir~~V 400 (405)
T d1kl1a_ 321 QLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVGSEQALEEARQRV 400 (405)
T ss_dssp TCCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 77499999999980959767869899999998872265688998589988999999999999996589679999999999
Q ss_pred ----E
Q ss_conf ----8
Q 001511 467 ----K 467 (1064)
Q Consensus 467 ----~ 467 (1064)
+
T Consensus 401 ~~L~~ 405 (405)
T d1kl1a_ 401 AALTD 405 (405)
T ss_dssp HHHHC
T ss_pred HHHHC
T ss_conf 99639
|
| >d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Proton glutamate symport protein superfamily: Proton glutamate symport protein family: Proton glutamate symport protein domain: Proton glutamate symport protein species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=30570.78 Aligned_cols=1 Identities=0% Similarity=1.002 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 l~~rili~lv~Gi~~G~~~~~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~ 80 (405)
T d2nwwa1 1 VLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLL 80 (405)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHH
T ss_conf 98899999999999999972222127899999989999999999999999999999999745501002089999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 tt~iA~~igl~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~l~~~iP~Ni~~al~~~~~l~vi~fail~Gial~~~~~~ 160 (405)
T d2nwwa1 81 TSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNS 160 (405)
T ss_dssp HHHHHHHHHHHHHHHSCSCCCCCCCCCCCCCCCCCCCCHHHHHGGGSCSCHHHHHHSCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999860133322000000014311001899999705587899964678630356788889999985022
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~l~~~~~~l~~v~~kii~~im~laPigvf~l~a~~~~~~g~~~l~~l~~~~~~~~~~~~l~~~~~~~i~~ 240 (405)
T d2nwwa1 161 ENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLL 240 (405)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 00345667889999999999999999898887778889999998753334555567899999999999999888889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~p~~~~~~~~~~~~~Af~T~SS~atlP~~~~~~~~~gv~~~i~~fvlPlgatin~~G~a~~~~~~~~f~a~~~g~ 320 (405)
T d2nwwa1 241 KIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGS 320 (405)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHHCCTGGGHHHHHHHHHTTTCCTTTHHHHTTTTSSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHCCCCHHHHHHHCCCHHHEEEECCCCCCCCHHHHHHHHHCCCCCCCCCEECCCCHHEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 98289848884322310421200166556617899999975999352010236302100364124899999999987197
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~l~~~~~~~~~~~~~l~s~g~~gvPg~~~v~~~~vl~~~glP~~~~~~~~~i~li~~id~l~D~~rT~~Nv~gd~~~a~i 400 (405)
T d2nwwa1 321 HLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAI 400 (405)
T ss_dssp CCCSSTTHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTCCTTSHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHE
T ss_conf 99989999999999999986178616799999999998699886410565888887498550550898828776588841
Q ss_pred ----E
Q ss_conf ----8
Q 001511 467 ----K 467 (1064)
Q Consensus 467 ----~ 467 (1064)
+
T Consensus 401 v~k~e 405 (405)
T d2nwwa1 401 VAKTE 405 (405)
T ss_dssp HHHHC
T ss_pred EECCC
T ss_conf 33579
|
| >d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal domain {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Pyruvate phosphate dikinase, N-terminal domain domain: Pyruvate phosphate dikinase, N-terminal domain species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=0 Score=30568.56 Aligned_cols=1 Identities=0% Similarity=0.802 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~lVGGK~AnLgel~~~GipVP~GFvITt~Ay~~Fl~~n~L~~~i~~~i~~~l~~~~~~~ 80 (405)
T d1h6za3 1 VAKKWVYYFGGGNADGNKNMKELLGGKGANLAEMVNLGIPVPPGFTITTEACKTYQETETIPQEVADQVRENVSRVEKEM 80 (405)
T ss_dssp CCCCCEEEECSSSCSCCTTCHHHHHHHHHHHHHHHHTTCCCCCEEEECHHHHTTTTTSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99747997399865578455750568899899999786999998886299999999738976889999999997664776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 160 (405)
T d1h6za3 81 GAKFGDPANPLLFSVRSGAAASMPGMMDTVLNLGLNKVTVDAWVRRAPRLERFVYDSYRRFITMYADIVMQVGREDFEEA 160 (405)
T ss_dssp CCBTTCTTSBCCEEEEESCTTC-----CCCCSBSCCHHHHHHHGGGCGGGHHHHHHHHHHHHHHHHHHHHCCCSTTTSTT
T ss_pred HHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 66523543115553023210122100455666665456689998742550566899999999763011246305678898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~v~~S~~~~~a~~yr~~~~~~~~~~~~ 240 (405)
T d1h6za3 161 LSRMKERRGTKFDTDLTASDLKELCDGYLELFELKTGCSFPQDPVMQLFAAIKAVFRSWGNPRATIYRRMNNITGLLGTA 240 (405)
T ss_dssp THHHHHHHSCSCGGGCCHHHHHHHHHTTHHHHHHHSSSCCCCCHHHHHHHHHHHHHHTTTCTTTTTHHHHSCCCSCCCCC
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHH
T ss_conf 88888751651124572888887888999866541387541054677678888987620572377778761754113331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~v~~~~~~~~~~sgv~~t~~~~tG~~~~~~~~~~~g~~~~vv~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (405)
T d1h6za3 241 VNVQAMVFGNINDRSATGVAFSRSPSTGENFFFGEYLVNAQGEDVVAGIRTPQQINHSLSLRWAKAHGVGEEERRKRYPS 320 (405)
T ss_dssp EEEEECCCSCSSTTCEEEEEESSCSSSCCSSCEEEEEESCCTTHHHHCCSCCEESSHHHHHHHHTTSSCCHHHHHHHSCC
T ss_pred HEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCEEEEECCCCHHHCCCCCEECCCCCCCC
T ss_conf 11234542135665443334556777898753368646676233213765770466403310100145321104665545
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~l~~e~~~~La~l~~~iE~~fg~PqDIEWAi~dg~L~ILQaRPv~~t~~a~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 400 (405)
T d1h6za3 321 MEEAMPENYRLLCDVRKRLENHYRDMQDLEFTVQDGRLWLLQCRNGKRTIHAAVRIAIDMVNEGLISREEAVLRIDPYQV 400 (405)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHTSCEEEEEEEETTEEEEEEEEECCCCHHHHHHHHHHHHHHTSSCHHHHHHTSCGGGG
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHH
T ss_conf 55528799999999999999982998204999989989999766788668889999999997699798999872798278
Q ss_pred ----E
Q ss_conf ----8
Q 001511 467 ----K 467 (1064)
Q Consensus 467 ----~ 467 (1064)
+
T Consensus 401 ~~~~~ 405 (405)
T d1h6za3 401 DHLMH 405 (405)
T ss_dssp GGGGC
T ss_pred HHHCC
T ss_conf 67448
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=30560.26 Aligned_cols=1 Identities=0% Similarity=0.570 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 m~d~~~vR~~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~ 80 (405)
T d1jf9a_ 1 IFSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFIN 80 (405)
T ss_dssp CCCHHHHHHTCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHCHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98979998758211467189982997382006899999999999998666987630409999999999999999999839
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i 160 (405)
T d1jf9a_ 81 ARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLF 160 (405)
T ss_dssp CSCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHC
T ss_conf 98755430237688897788842331026789989998375331699999999973968999877998838799999753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~Gp~G~g~l~v~~~ 240 (405)
T d1jf9a_ 161 DEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEA 240 (405)
T ss_dssp CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCSSCEEEEECHH
T ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEECCCCEECCCCCCCHHHCCCCEEECCCCCCCCCCCCEEEEECHH
T ss_conf 69957999966777655438467766678873975641554000015653333078646613230156887510242265
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~ 320 (405)
T d1jf9a_ 241 LLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVP 320 (405)
T ss_dssp HHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 54036863223565675344555655553224307787677899999999999981849999999999988776651388
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~~r~~ivsf~~~~~~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i 400 (405)
T d1jf9a_ 321 DLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRI 400 (405)
T ss_dssp TEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 65556876767479997389899999999987892997660321567886099988999788999999999999999999
Q ss_pred ----E
Q ss_conf ----8
Q 001511 467 ----K 467 (1064)
Q Consensus 467 ----~ 467 (1064)
-
T Consensus 401 ~r~~~ 405 (405)
T d1jf9a_ 401 HRLLG 405 (405)
T ss_dssp HHHHC
T ss_pred HHHCC
T ss_conf 99609
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=30559.18 Aligned_cols=1 Identities=100% Similarity=0.237 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~~~~~g~~~~~~~~~~~~re~v~v~~~~dt~rDG~~d~l~~di~rP~~~~k~Pvil~~sPY~~~~~~~~~~~~~~~ 80 (405)
T d1lnsa3 1 LDNHYHFFNDKSLATFDSSLLEREVLWVESPVDSEQRGENDLIKIQIIRPKSTEKLPVVMTASPYHLGINDKANDLALHD 80 (405)
T ss_dssp CCSSCCEETTEECSCSCGGGCEEEEEEEECSCCTTCSSSCCEEEEEEEECCCSSCEEEEEEECSSTTCCCHHHHHHHCCC
T ss_pred CCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 98855433783413205887568688982888878899874799999742889974599996786787766544322345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GYavv~~D~RG~g~S~G~~~~~~~~ 160 (405)
T d1lnsa3 81 MNVELEEKTSHEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQTSGDYQ 160 (405)
T ss_dssp CCCCCCCCCSEECCCCCCCCCCCCCCCCCCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCCCTTSHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHH
T ss_conf 65433445543333233454222234555665555654455664445568898679879997888788999755468866
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 e~~D~~~~IeWl~~~~~~~~~~~~~~~~~q~WsnGkVGm~G~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G 240 (405)
T d1lnsa3 161 QIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENG 240 (405)
T ss_dssp HHHHHHHHHHHHTTSSCEESSTTCCCEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHCCC
T ss_conf 63009999999871563333433443211454387458995289999999998608865419994476655888754178
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~w~~~s~~~~~~~I~vP~L~i~G 320 (405)
T d1lnsa3 241 LVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHG 320 (405)
T ss_dssp SBCCCTTCTTCCHHHHHHHHCGGGGSHHHHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHCHHHHHHCCCHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCEEEEEE
T ss_conf 40035421255666653146655555400221115565154203455541233233555536853565137988899975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 w~D~~v~~~~~~~~y~al~~~~~~~Lilgpw~H~~~~~~~~~d~~~~~~~wFD~~LkG~~ng~~~~~~~~~~~~g~~~W~ 400 (405)
T d1lnsa3 321 LQDWNVTPEQAYNFWKALPEGHAKHAFLHRGAHIYMNSWQSIDFSETINAYFVAKLLDRDLNLNLPPVILQENSKDQVWT 400 (405)
T ss_dssp TTCCSSCTHHHHHHHHHSCTTCCEEEEEESCSSCCCTTBSSCCHHHHHHHHHHHHHTTCCCCCCCCSEEEECTTSSSCEE
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 06889897899999999873799379995887899765555369999999999986889889898987999737999741
Q ss_pred ----E
Q ss_conf ----8
Q 001511 467 ----K 467 (1064)
Q Consensus 467 ----~ 467 (1064)
=
T Consensus 401 ~~~~W 405 (405)
T d1lnsa3 401 MMNDF 405 (405)
T ss_dssp EESCS
T ss_pred CCCCC
T ss_conf 08989
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=100.00 E-value=0 Score=30488.55 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~y~p~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~ 80 (404)
T d1z7da1 1 KTPEDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFS 80 (404)
T ss_dssp CCHHHHHHHHHHHBCCCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEE
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEECCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 98799997787617888999885699946388997998999983306887846259699999999999857886665102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~ 160 (404)
T d1z7da1 81 VPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF 160 (404)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 79999997444314433024410243037789999998875213443222442222245788744333456554455677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~ 240 (404)
T d1z7da1 161 GPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLC 240 (404)
T ss_dssp -----CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSG
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC
T ss_conf 88876300236656899999706997799999778388897409999999999999881978999767547774434345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~ 320 (404)
T d1z7da1 241 VHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFL 320 (404)
T ss_dssp GGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHHH
T ss_conf 00059887778872311289887554456399871478998576889895013555544344300003443001015789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~~ir~~Ppl~it~~~id~~~~~l~~al 400 (404)
T d1z7da1 321 ENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTV 400 (404)
T ss_dssp HHHHHHHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCHHHHHHHHHHCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999975699727887527199999748865599999999969938943899989997986789999999999999999
Q ss_pred ---E
Q ss_conf ---8
Q 001511 467 ---K 467 (1064)
Q Consensus 467 ---~ 467 (1064)
+
T Consensus 401 k~~~ 404 (404)
T d1z7da1 401 KFFD 404 (404)
T ss_dssp HHHC
T ss_pred HHHC
T ss_conf 9629
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=100.00 E-value=0 Score=30486.80 Aligned_cols=1 Identities=0% Similarity=-0.560 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~d~~d~l~~~R~~F~~~~~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA 80 (404)
T d1qz9a_ 1 TTRNDCLALDAQDSLAPLRQQFALPEGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLA 80 (404)
T ss_dssp CCHHHHHHHHHTCTTGGGGGGBCCCTTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHH
T ss_pred CCHHHHHHHCCCCCHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 96699997567781899985189999989867851033789999999999998750467565552328999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~llga~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (404)
T d1qz9a_ 81 TLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQA 160 (404)
T ss_dssp TTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHHH
T ss_pred HHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHEEEEECEECCCCCCCHHHHHH
T ss_conf 99689987579956706777777655555420357885799962543347788775422132100010354542668986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 i~~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~ 240 (404)
T d1qz9a_ 161 IDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWV 240 (404)
T ss_dssp CSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEE
T ss_pred CCCCCEEEEEECCCCCCCCEECHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECHHHCCCCCCEEEEEEE
T ss_conf 69884599984245555616238997310324443326885123321233444454509998050214668856999874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 320 (404)
T d1qz9a_ 241 SPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELV 320 (404)
T ss_dssp CTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 36556307863223577555522234544335604554320010467888777888877668999999987678999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~~~i~~p~~~~~r~~~vsf~~~~~~~v~~~L~~~gi~~~~r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 321 EQRCAAHELTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp HHHHTTSCCEECSCSSGGGBCSEEEEECTTHHHHHHHHHTTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCEEEECCCCCCCEEEEEEEECCCHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 75435898799788883120139999169999999999888989862599869997997789999999999999999971
Q ss_pred ---E
Q ss_conf ---8
Q 001511 467 ---K 467 (1064)
Q Consensus 467 ---~ 467 (1064)
.
T Consensus 401 ~~~~ 404 (404)
T d1qz9a_ 401 KTWA 404 (404)
T ss_dssp TTTC
T ss_pred CCCC
T ss_conf 7889
|
| >d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome P450-CAM species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=0 Score=30486.78 Aligned_cols=1 Identities=100% Similarity=0.769 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
|
T Consensus 1 l~p~p~~~p~~~~~d~d~~~p~~~~~dp~~~~~~lr~~~~~~~~~~~~~~g~w~vtr~~dv~~vl~d~~~Fss~~~~~~~ 80 (404)
T d1re9a_ 1 LAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRHFSSECPFIPR 80 (404)
T ss_dssp CCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHGGGGSTTSCSEEEECGGGCEEEECSHHHHHHHHHCTTTEETTSCSSSH
T ss_pred CCCCCCCCCHHHCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEECCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 98877999832266789898577632818999999960899779856999989976999999997699757689987764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~D~p~H~~~R~~l~~~Fs~~~l~~~~~~i~~~~~~ll~~~~~~g~~D~v~~~a~~l~~~vi~~llG~p 160 (404)
T d1re9a_ 81 EAGEAYDFIPTSMDPPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFMLLAGLP 160 (404)
T ss_dssp HHHHHCCCTTTTCCTTHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGGGSEEEHHHHTTTHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHC
T ss_conf 44333456654578889999997526757843189998999999999974421467346420344577888799987420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~li~~~r~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~l~~ag~ 240 (404)
T d1re9a_ 161 EEDIPHLKYLTDQMTRPDGSMTFAEAKEALYDYLIPIIEQRRQKPGTDAISIVANGQVNGRPITSDEAKRMCGLLLVGGL 240 (404)
T ss_dssp GGGHHHHHHHHHHHHSCCSSSCHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHTCEETTEECCHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 02102321335655431226899999999999999998887506654402333100233345758899999999998763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 eTt~~~l~~~~~~L~~~p~~~~~l~~~~~~~~~~v~E~lR~~~p~~~~r~~~~~~~~~G~~ip~G~~V~~~~~aanrDp~ 320 (404)
T d1re9a_ 241 DTVVNFLSFSMEFLAKSPEHRQELIERPERIPAACEELLRRFSLVADGRILTSDYEFHGVQLKKGDQILLPQMLSGLDER 320 (404)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHCGGGHHHHHHHHHHHTCCBCCEEEESSCEEETTEEECTTCEEECCHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 34678899999997550588999876410111123342234553333433223200388667640233243675367854
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~f~dPd~F~p~R~~~~hl~FG~G~h~C~G~~lA~~e~~~~l~~ll~r~p~~~l~~~~~~~~~~~~~~g~~~lpv~~~P~~ 400 (404)
T d1re9a_ 321 ENACPMHVDFSRQKVSHTTFGHGSHLCLGQHLARREIIVTLKEWLTRIPDFSIAPGAQIQHKSGIVSGVQALPLVWDPAT 400 (404)
T ss_dssp TSSSTTSCCTTCSSCCCCTTCCGGGCCTTHHHHHHHHHHHHHHHHHHCCCCEECTTCCCCEECSSBCEESCCEEECCGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEECCCCCCCCCEEEEEEEEECC
T ss_conf 47993331889999998877998616801999999999999999997898589999964315887258543468992068
Q ss_pred ---E
Q ss_conf ---8
Q 001511 467 ---K 467 (1064)
Q Consensus 467 ---~ 467 (1064)
.
T Consensus 401 ~~~~ 404 (404)
T d1re9a_ 401 TKAV 404 (404)
T ss_dssp CCCC
T ss_pred CCCC
T ss_conf 6869
|
| >d1h12a_ a.102.1.2 (A:) Endo-1,4-beta-xylanase {Pseudoalteromonas haloplanktis [TaxId: 228]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: Endo-1,4-beta-xylanase species: Pseudoalteromonas haloplanktis [TaxId: 228]
Probab=100.00 E-value=0 Score=30481.47 Aligned_cols=1 Identities=0% Similarity=-1.490 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~a~~~~~y~n~~~~~~~~~i~~k~~~~~~~~f~~~~~~~~y~~~~~~~~~~~~~~~~i~d~~~~dv~SEGq 80 (404)
T d1h12a_ 1 AFNNNPSSVGAYSSGTYRNLAQEMGKTNIQQKVNSTFDNMFGYNNTQQLYYPYTENGVYKAHYIKAINPDEGDDIRTEGQ 80 (404)
T ss_dssp CCCSSCCSSCHHHHCCCCCHHHHTTCCSHHHHHHHHHHHHSSSCSSSCCEEEEEETTEEEEEEEEECCTTTCCEEEHHHH
T ss_pred CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 98888787761333755478898619999999999999971789884489971687665200012255479986654378
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 gYGMl~Av~~ndr~~FD~Lw~Wt~~~l~~~d~~~~~~~~gL~aW~~~~~~~~~~~v~d~nsAtDGDl~iA~ALl~A~~~W 160 (404)
T d1h12a_ 81 SWGMTAAVMLNKQEEFDNLWRFAKAYQKNPDNHPDAKKQGVYAWKLKLNQNGFVYKVDEGPAPDGEEYFAFALLNASARW 160 (404)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTBCCTTCSSGGGTTCBEEEEEECTTSCEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89999999809999999999999998604555444455677613345888987556889999768999999999999861
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 g~~~~~~Y~~eA~~il~~i~~~~~~~~~~~l~P~~~~f~nPSY~~P~~~~~fa~~~~~~~~~~~W~~v~~~s~~ll~~~~ 240 (404)
T d1h12a_ 161 GNSGEFNYYNDAITMLNTIKNKLMENQIIRFSPYIDNLTDPSYHIPAFYDYFANNVTNQADKNYWRQVATKSRTLLKNHF 240 (404)
T ss_dssp CSSSSCCHHHHHHHHHHHHHHHSEETTEECSCTTCSSCBCGGGCCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 89407799999999999888740578852556875578686325489999999860577540889999999999999850
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~s~~p~~gL~~d~~~~dg~~~~~~~~~~~~~~~~~~~yDA~Rvpl~~a~dy~w~~~d~~~~~~~~~~~~f~~~~~~~~ 320 (404)
T d1h12a_ 241 TKVSGSPHWNLPTFLSRLDGSPVIGYIFNGQANPGQWYEFDAWRVIMNVGLDAHLMGAQAWHKSAVNKALGFLSYAKTNN 320 (404)
T ss_dssp HHHSSTTTTTCCCSCBCTTSCBCCSCCSTTCCSCTTEECTTTHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 13467887789957872489736676667676778865502888778998887505888455799999999999875026
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~~~~~G~~~~~~~~~g~~a~~a~a~~a~~~~~~a~~~~~~~~~~~~~~~~~~YY~~~L~L~~ll~lsG~~r~~ 400 (404)
T d1h12a_ 321 SKNCYEQVYSYGGAQNRGCAGEGQKAANAVALLASTNAGQANEFFNEFWSLSQPTGDYRYYNGSLYMLAMLHVSGNFKFY 400 (404)
T ss_dssp TTSSCBSCEETTEECSSCBCCHHHHHHHHHHGGGCCCHHHHHHHHHHHHTCCCCCSTTHHHHHHHHHHHHHHTTTCCCCC
T ss_pred CCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 88877631316896478888889999999999864793789999999970357888888789999999999963984772
Q ss_pred ---E
Q ss_conf ---8
Q 001511 467 ---K 467 (1064)
Q Consensus 467 ---~ 467 (1064)
-
T Consensus 401 ~~~~ 404 (404)
T d1h12a_ 401 NNTF 404 (404)
T ss_dssp CCC-
T ss_pred CCCC
T ss_conf 4579
|
| >d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycoside hydrolase/deacetylase family: AmyC N-terminal domain-like domain: Alpha-amylase AmyC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=30485.71 Aligned_cols=1 Identities=0% Similarity=0.802 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~k~~l~lvlH~HqP~~~~~~~~~~~ee~W~~~~~~~~Y~pll~~l~~~~~~r~t~n~sP~LleQL~D~~~~~~f~~~~~~ 80 (404)
T d2b5dx2 1 MRGKILIFLHAHLPYVHHPEYDHFLEERWLFEAITETYIPLLMMFDEIEDFRLTMSITPPLMEMLSSRDLQEKYERHMEK 80 (404)
T ss_dssp CCEEEEEEEEECCCCCCCTTCSSCTTHHHHHHHHHHTHHHHHHHHHHSSCCCEEEEECHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 93489999945888644899886443669999999988999999985868619998779999987586756446999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~r~L~~~G~vEll~~~y~Hpilpll~~~~e~~~ 160 (404)
T d2b5dx2 81 LIELANKEVERTKKEHPLKHKMAKFYREHFEKILNVFRSYDGNILEGFKKYQETGKLEIVTCNATHAFLPLYQMYPEVVN 160 (404)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHHHTSEEEEEECTTCBCGGGGTTCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCHHHHH
T ss_conf 99986666552234204788999999999999999999966478999999997698048723520123455049869999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~Qi~~g~~~~~~~fG~~P~G~W~pE~a~~~~l~~~l~~~Gi~~~~~d~~~l~~~~~~~~~~~~~p~~~~~~~~~~~rd~~ 240 (404)
T d2b5dx2 161 AQITVGVKNYEKHMKKHPRGIWLAECGYYQGLDLYLAQNNVEYFFVDSHAFWFADEQPRYGVYRPIMTPSGVFAFARDPE 240 (404)
T ss_dssp HHHHHHHHHHHHHHSSCCSEEECGGGCBCTTHHHHHHHTTCCEEEECTHHHHTSSSCCTTGGGSCEECTTSCEEEECCGG
T ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 99999999999986999988978753558769999997798699968335523577887666576215886157742510
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~vws~~~G~pg~~~~~~~~~~~~~~~~~~~i~~~frd~~ls~~igf~y~~~~~~~~~~~~k~~Yd~~~A~~~a~~~a 320 (404)
T d2b5dx2 241 SSEQVWSAAVGYPGDPRYREFYRDIGFDREMEYIKDYIDPSGVRINTGIKYHRITSKSLDASQKEYYDIDLAMEAVEEHA 320 (404)
T ss_dssp GCGGGGCTTTSGGGCTTSBCTTCCHHHHSCHHHHGGGSCTTSCCCCCSCCCBBCCSSCSCGGGCCBCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 01235414568878842121024533467776135764477632011402303566446643234479899999999989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~f~~~~~~~~~~~~~~~~~~~vv~i~~DgE~fGh~w~eG~~fL~~l~~~l~~~~~i~~~T~se~l~~~~~~~~~~l~~g 400 (404)
T d2b5dx2 321 RDFLHKKESQARRLMDIMGVEPVIVAPFDAELFGHWWFEGVFFLKRFFELVNESKDLKLVTASEVIDTLEEVQIATPADS 400 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCEEEEEEEGGGBTTTBTTHHHHHHHHHHHHHHCSSEEECCHHHHHHHCCCCCBCCCCSB
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHCCCCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHCCCCCCCCCCCC
T ss_conf 99999999999876523689987999755132066713379999999999863898389769999986899772230799
Q ss_pred ---E
Q ss_conf ---8
Q 001511 467 ---K 467 (1064)
Q Consensus 467 ---~ 467 (1064)
+
T Consensus 401 SWg~ 404 (404)
T d2b5dx2 401 SWGA 404 (404)
T ss_dssp CSCC
T ss_pred CCCC
T ss_conf 9998
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30484.20 Aligned_cols=1 Identities=0% Similarity=-2.554 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~P~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~~~ 80 (404)
T d2byla1 1 GPPTSDDIFEREYKYGAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAF 80 (404)
T ss_dssp CCCCHHHHHHHHHHHBCSCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTE
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCEEEECCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 98967999999877546788987844898454999979879999926889988553798999999999996478755643
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~ 160 (404)
T d2byla1 81 YNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYD 160 (404)
T ss_dssp EESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHT
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC
T ss_conf 31049999876543011332220147666403589999987640366312311223357884556510340577865455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~p~~~~~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~ 240 (404)
T d2byla1 161 GFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW 240 (404)
T ss_dssp TSCSCCTTEEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred CCCCCCCCEEEECCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCC
T ss_conf 77888887157346679999985579986999978843888971499999999999998628079960465364635533
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g~~ 320 (404)
T d2byla1 241 LAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGII 320 (404)
T ss_dssp SGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CHHHHCCCCCCEEEECCHHHCCCCCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 33654699988999774646898662104521023312578887859886999999999999999854703566676688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 l~~~l~~l~~~~i~~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~~Gvl~~~~~~~~i~l~PpL~it~~~id~~~~~l~~a 400 (404)
T d2byla1 321 LRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKT 400 (404)
T ss_dssp HHHHHHTSCTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECEEEETTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 99999960136631356246289999826886129999999996991992489998999799678999999999999999
Q ss_pred ---E
Q ss_conf ---8
Q 001511 467 ---K 467 (1064)
Q Consensus 467 ---~ 467 (1064)
=
T Consensus 401 l~~f 404 (404)
T d2byla1 401 ILSF 404 (404)
T ss_dssp HHTC
T ss_pred HHCC
T ss_conf 9729
|
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=30489.01 Aligned_cols=1 Identities=100% Similarity=0.071 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~P~Pi~~~~Dp~dR~v~~~P~~~~pyD~R~~i~g~~~~~~~~~~i~D~~sF~E~~~~~a~svVtG~ARL~G~PVGVIAn 80 (404)
T d1uyra2 1 NMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVIGV 80 (404)
T ss_dssp TSCCCCCCCSSCSSSCCCCCCCSSSCCCHHHHHHCEEETTEEECCSSCTTCCEEESTTSCTTEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCEEEEEEEECCEEEEEEEE
T ss_conf 98989789999800135657899999777999846755555445010287025520046786699999999999999986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 e~~~~~g~i~aDpa~~~s~~~~~~~~Ggv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~pGF~~G~~~E~~gilr~GA~i 160 (404)
T d1uyra2 81 ETRTVENLIPADPANPNSAETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFI 160 (404)
T ss_dssp CCSCEEEEECCCTTCSSCCCEEEEECTTCBCHHHHHHHHHHHHHHHTTSCCCEEECCCCCCBCC------CTHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 76102687568755653055565404786685579999999998652346645886137766676899987899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 v~A~~~~~vP~i~vI~~~g~~~GGa~vv~~~~~~~~~~~~yAwP~a~~gVm~pEGav~I~fr~e~~~~~~~r~d~~~~el 240 (404)
T d1uyra2 161 VDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPQGMVGIKFRREKLLDTMNRLDDKYREL 240 (404)
T ss_dssp HHHHHTCCSCEEEEECTTCEEEHHHHHTTCGGGGTTTEEEEEETTCEEESSCHHHHHHHHSCHHHHHHHHHHC-------
T ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHEECCHHHHCCHHHHHHHHHHH
T ss_conf 99998548997999957864130234103676677655488878654106786654321033021113265568999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~l~~~~~a~e~~~~l~~~i~~re~~l~p~y~qvA~~Fadlhdt~~Rm~~kG~I~~iv~w~~tR~~~~~~lrr~l~e~~ 320 (404)
T d1uyra2 241 RSQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWTEARRFFFWRLRRRLNEEY 320 (404)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTSSHHHHHHHTCSSEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98725755587789999999999999862789999999998508687898568466122878859999999999874999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (404)
T d1uyra2 321 LIKRLSHQVGEASRLEKIARIRSWYPASVDHEDDRQVATWIEENYKTLDDKLKGLKLESFAQDLAKKIRSDHDNAIDGLS 400 (404)
T ss_dssp HHHTTTTCCSSCCHHHHHHHHHTTSCTTSCTTCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 99999985777787999999999987346865639999999847799999999998999999999997539088999999
Q ss_pred ---E
Q ss_conf ---8
Q 001511 467 ---K 467 (1064)
Q Consensus 467 ---~ 467 (1064)
+
T Consensus 401 ~~~~ 404 (404)
T d1uyra2 401 EVIK 404 (404)
T ss_dssp TCCC
T ss_pred HHHC
T ss_conf 9849
|
| >d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp154c1 monooxygenase species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=0 Score=30407.13 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~lR~~GPv~~~~~~g~~~~~vvt~~~~v~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (403)
T d1gwia_ 1 ARIPLDPFVTDLDGESARLRAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPRLVKDINVWGAWRRGEIPADWPLIGLAN 80 (403)
T ss_dssp CCEECCTTCSCHHHHHHHHHHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTTEECCGGGCHHHHTTCSCTTCTTHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98888987669559999998149978988479960999679999999966976133765333222466765443200003
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~g~~ll~~dG~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~~d~~~~~a~~~~~~~~~~~~g~~~~~~ 160 (403)
T d1gwia_ 81 PGRSMLTVDGAEHRRLRTLVAQALTVRRVEHMRGRITELTDRLLDELPADGGVVDLKAAFAYPLPMYVVADLMGIEEARL 160 (403)
T ss_dssp CCSSGGGCCHHHHHHHHHHHTTTSCHHHHHTTHHHHHHHHHHHHHTSCCSCCCEEHHHHTTTHHHHHHHHHHHTCCGGGH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 68862158857899999997640443313222447989899875321035844431034433333233221047641000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ag~~tt 240 (403)
T d1gwia_ 161 PRLKVLFEKFFSTQTPPEEVVATLTELASIMTDTVAAKRAAPGDDLTSALIQASENGDHLTDAEIVSTLQLMVAAGHETT 240 (403)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHCCBTTBCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCH
T ss_conf 00022233222222048999999999987689999987427642222111112123320123358999999987064210
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~l~~~~~~l~~~p~~~~~l~~~~~~l~~~i~E~lRl~pp~~~~~~r~~~~d~~~~g~~ip~G~~V~~~~~~~~rd~~~ 320 (403)
T d1gwia_ 241 ISLIVNAVVNLSTHPEQRALVLSGEAEWSAVVEETLRFSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRDERA 320 (403)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHTTSSCHHHHHHHHHHHSCSBCCEEEEEESSCEEETTEEECTTCEEEECHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHCCCCCCCCCCCCCCCEEECCEEECCCCEEEEECCCCCCCHHH
T ss_conf 11445555433421589999997620100001220221275200024344687670435654632353100245677654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~pdP~~F~PeR~~~~~~lpFG~G~r~C~G~~lA~~e~~~~l~~ll~~f~~~~l~~p~~~~~~~~~~~~~~~~~lpv~~~ 400 (403)
T d1gwia_ 321 HGPTADRFDLTRTSGNRHISFGHGPHVCPGAALSRMEAGVALPALYARFPHLDLAVPAAELRNKPVVTQNDLFELPVRLA 400 (403)
T ss_dssp HCGGGGSCCTTCCCSSCCCTTCCSTTCCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCBCSCTTBCCBSCCEEESS
T ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCCCCEEEEEE
T ss_conf 09955434878899998376688872680199999999999999999679788888834464688655579876479995
Q ss_pred --E
Q ss_conf --8
Q 001511 467 --K 467 (1064)
Q Consensus 467 --~ 467 (1064)
+
T Consensus 401 ~~~ 403 (403)
T d1gwia_ 401 HHH 403 (403)
T ss_dssp CC-
T ss_pred CCC
T ss_conf 079
|
| >d1xksa_ b.69.14.1 (A:) Nuclear pore complex protein Nup133 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nuclear pore complex protein Nup133 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30408.70 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~ve~~g~~LPv~V~EaLt~a~~~~~~s~~~s~~G~awvv~g~~l~VW~y~~s~~~~~~~C~~L~LP~sdl~~~a~ 80 (403)
T d1xksa_ 1 ESVNYDVKTFGSSLPVKVMEALTLAEVDDQLTINIDEGGWACLVCKEKLIIWKIALSPITKLSVCKELQLPPSDFHWSAD 80 (403)
T ss_dssp CCSSEEEEECSSCCCHHHHHHHHHCCTTSCEEEEECTTSEEEEEETTEEEEEECCSSCCGGGCCEEEEECCCCSSCCCGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 97542676778987688998862057887447999899679999799999971578887787521797189645455676
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 Lv~v~~~~~~~~~~~~~~~gvi~vs~tG~VryW~sI~~~~s~~e~~i~l~~~E~~~~l~~~e~~g~ilatstg~l~l~~~ 160 (403)
T d1xksa_ 81 LVALSYSSPSGEAHSTQAVAVMVATREGSIRYWPSLAGEDTYTEAFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIRLIP 160 (403)
T ss_dssp GEEEEECC-------CTTEEEEEECTTCEEEEESCTTCTTCCEEEECC----CCEEEEEEETTTEEEEEETTCCEEEEEE
T ss_pred EEEECCCCCCCCCCCCCCCEEEEECCCCEEEECHHCCCCCCCCEEEECCCCCEEEEEEEECCCCCEEEEECCEEEEEEEC
T ss_conf 56761367767667887657999979921898710255766423431368966899888507842999947514999923
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~l~~~~L~~~~g~l~Gi~~~~sSl~~~~~~~~~~~~~s~~~~~~~~~v~~ls~~~lq~W~l~~~~e~~~~~~di~~ 240 (403)
T d1xksa_ 161 ESSGKIHQHILPQGQGMLSGIGRKVSSLFGILSPSSDLTLSSVLWDRERSSFYSLTSSNISKWELDDSSEKHAYSWDINR 240 (403)
T ss_dssp CTTSCEEEEECTTCCCC------------------CCCCEEEEEEETTTTEEEEEESSEEEEEEECSSCEEEEEEEEHHH
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEHHHHH
T ss_conf 78982899993588754555334542002124775434211133455314999977995478980389861567513789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~i~e~~~~~i~~~~~~~~~~~~~i~~~~LD~~~~~~g~~iL~~~~~~~~~~~~~yy~L~ti~~~~~~~~~~~~~~l~~~~ 320 (403)
T d1xksa_ 241 ALKENITDAIWGSESNYEAIKEGVNIRYLDLKQNCDGLVILAAAWHSADNPCLIYYSLITIEDNGCQMSDAVTVEVTQYN 320 (403)
T ss_dssp HHHHHHHHHHHTTSTTHHHHHTTCEEEEEEEEEETTEEEEEEEEECTTSSSCBEEEEEEEECCBTTBCCSCEEEEECSCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEEEEEEEEEC
T ss_conf 99999998752023556565444305998875848976999999732668870799999998278713788999867767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~~~~rl~vp~p~~~~ayv~~~~~V~~~~~~~~~~~~~~d~I~F~~~~d~il~~~~~~~~pl~fs~~~Glv~it 400 (403)
T d1xksa_ 321 PPFQSEDLILCQLTVPNFSNQTAYLYNESAVYVCSTGTGKFSLPQEKIVFNAQGDSVLGAGACGGVPIIFSRNSGLVSIT 400 (403)
T ss_dssp CBCCCGGGCCCEEECCCSSSSEEEEECSSEEEEEECTTCTTCCCCEEEECCGGGCCEEEEEEETTEEEEEETTTEEEEEE
T ss_pred CCCCCCCCCCCEEEECCCCCCEEEEEECCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCEEEEEEECCEEEEEE
T ss_conf 85674434760599658998389999099899995789989984417888454677885121578769999234189995
Q ss_pred --E
Q ss_conf --8
Q 001511 467 --K 467 (1064)
Q Consensus 467 --~ 467 (1064)
+
T Consensus 401 ~~~ 403 (403)
T d1xksa_ 401 SRE 403 (403)
T ss_dssp ECC
T ss_pred CCC
T ss_conf 799
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=0 Score=30408.59 Aligned_cols=1 Identities=0% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~~~~~~~~~~~~s~ire~~~~~~~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~ai 80 (403)
T d1wsta1 1 INFDSFFSEKAMLMKASEVRELLKLVETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLAL 80 (403)
T ss_dssp CCGGGGCCHHHHHCCCHHHHHHHHHHTSSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 98789999998508981899999972899958899978895206989999999999974760014889986779999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 a~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~ 160 (403)
T d1wsta1 81 ARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEK 160 (403)
T ss_dssp HHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 99999984899876773642221178899999986268755567886303567776404540267523667743112122
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S 240 (403)
T d1wsta1 161 LEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGT 240 (403)
T ss_dssp HHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEE
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCHHHEECCCCCCCCCCCCCCCCCEEEECC
T ss_conf 00011101343212322466898786399999999998887449265345021212347887874345677770799845
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~SK~~~~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 320 (403)
T d1wsta1 241 FSKILAPGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPE 320 (403)
T ss_dssp STTTTCGGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred CCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 55133685663444456578899999876402345530145677654114430467889999888999999999864668
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~p~gg~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al~rl~~~l~~~~ 400 (403)
T d1wsta1 321 GVEWTKPEGGMFVRVTLPEGIDTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEM 400 (403)
T ss_dssp TCEECCCSBSSEEEEECCTTCCTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCEEEEEEECCCCCCHHHHHHHHHHCCEEEEECHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 73780788146999989999999999999997897999336636899989979999567999999999999999999998
Q ss_pred --E
Q ss_conf --8
Q 001511 467 --K 467 (1064)
Q Consensus 467 --~ 467 (1064)
-
T Consensus 401 k~~ 403 (403)
T d1wsta1 401 KRV 403 (403)
T ss_dssp HHC
T ss_pred HCC
T ss_conf 449
|
| >d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: p450 monoxygenase OxyC species: Amycolatopsis orientalis [TaxId: 31958]
Probab=100.00 E-value=0 Score=30406.97 Aligned_cols=1 Identities=0% Similarity=-2.484 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~p~~~~~~~~~dP~~~~~~lR~~gPv~ri~~~~~~~~g~~~~w~vt~~~~vr~vl~d~~~fss~~~~~~~ 80 (403)
T d1ueda_ 1 DIDQVAPLLREPANFQLRTNCDPHEDNFGLRAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHEHFTTRPQFTQS 80 (403)
T ss_dssp CCCSCCCEEECCTTTTCEETTEECHHHHHHHTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCSSEECCCCC---
T ss_pred CHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 93234767688344023117997699999995399798516776435888489979999999997598646488665644
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~l~~~Dg~~h~~~Rr~l~~~Fs~~~l~~~~~~i~~~~~~ll~~l~~~g~~~Dl~~~~~~~~~~~~~~~ 160 (403)
T d1ueda_ 81 KSGAHVEAQFVGQISTYDPPEHTRLRKMLTPEFTVRRIRRMEPAIQSLIDDRLDLLEAEGPSADLQGLFADPVGAHALCE 160 (403)
T ss_dssp ------CGGGTTCGGGCCTTHHHHHHHHHGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEHHHHTHHHHHHHHHHH
T ss_pred CCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 55442202216764157815799999998686597999876179999999999874124875203566654456666677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rr~~~~~~~~~~~~~~~~~~ls~~~l~~~~~~~l 240 (403)
T d1ueda_ 161 LLGIPRDDQREFVRRIRRNADLSRGLKARAADSAAFNRYLDNLLARQRADPDDGLLGMIVRDHGDNVTDEELKGLCTALI 240 (403)
T ss_dssp HHTCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 73260333456655554302301567888877777899999999999862133115555422366466888877788887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~aG~dTt~~~l~~~l~~L~~~p~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~R~~~~d~~~~G~~ip~G~~V~~~~~~ 320 (403)
T d1ueda_ 241 LGGVETVAGMIGFGVLALLDNPGQIELLFESPEKAERVVNELVRYLSPVQAPNPRLAIKDVVIDGQLIKAGDYVLCSILM 320 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSGGGTTHHHHCHHHHHHHHHHHHHHHCSSCSCSCEEESSCEEETTEEECTTCEEEECHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEECCHHC
T ss_conf 40104678999999999862320101122202442212333202223344322010134645589743333210001000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~rdp~~f~dP~~F~PeR~~~~~lpFG~G~r~CiG~~lA~~el~~~l~~Ll~~f~~~~l~~~~~~~~~~~~~~~~~~~lp 400 (403)
T d1ueda_ 321 ANRDEALTPDPDVLDANRAAVSDVGFGHGIHYCVGAALARSMLRMAYQTLWRRFPGLRLAVPIEEVKYRSAFVDCPDQVP 400 (403)
T ss_dssp HTTCTTTSSSTTSCCTTSCCCCCCTTCCSTTSCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCBCCSSSCCBSCCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCEECCEEEE
T ss_conf 25783227994243889999999979998846918999999999999999996797788988776544477510764656
Q ss_pred --E
Q ss_conf --8
Q 001511 467 --K 467 (1064)
Q Consensus 467 --~ 467 (1064)
=
T Consensus 401 v~f 403 (403)
T d1ueda_ 401 VTW 403 (403)
T ss_dssp EEC
T ss_pred EEC
T ss_conf 569
|
| >d3b55a1 c.150.1.3 (A:40-442) Succinoglycan biosynthesis protein BC3120 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: EreA/ChaN-like superfamily: EreA/ChaN-like family: EreA-like domain: Succinoglycan biosynthesis protein BC3120 species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=0 Score=30410.58 Aligned_cols=1 Identities=0% Similarity=-0.792 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~wi~~~a~pL~~~~p~~~~~Dl~~L~~~v~dariV~LGEatHGt~Ef~~~r~~l~r~Lvee~Gf~~va~E~d~~~~ 80 (403)
T d3b55a1 1 NQIAKWLEAHAKPLKTTNPTASLNDLKPLKNMVGSASIVGLGEATHGAHEVFTMKHRIVKYLVSEKGFTNLVLEEGWDRA 80 (403)
T ss_dssp HHHHHHHHHHCEEECCCCTTSCSGGGTTHHHHHTTCSEEEEEESCTTBHHHHHHHHHHHHHHHHHSCCCEEEEEEEHHHH
T ss_pred CHHHHHHHHHCEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 95899999846718888999984779999987479739997267656079999999999999997699889994795889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~vn~yV~~g~g~~~~~~~~~w~~~e~~~li~WmR~yN~~~~~~~~v~f~G~D~~~~~~s~~~~v~~yl~~~~p~~~~~~ 160 (403)
T d3b55a1 81 LELDRYVLTGKGNPSQHLTPVFKTKEMLDLLDWIRQYNANPKHKSKVRVIGMDIQSVNENVYNNIIEYIKANNSKLLPRV 160 (403)
T ss_dssp HHHHHHHHHSCSCGGGTSCGGGCBHHHHHHHHHHHHHHHCTTCSCCCEEEEEECSCCCHHHHHHHHHHHHHHHGGGTHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 99988875488887787676435288999999999984458877842799854565205578999999986198889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 240 (403)
T d3b55a1 161 EEKIKGLIPVTKDMNTFESLTKEEKEKYVLDAKTISALLEENKSYLNGKSKEFAWIKQNARIIEQFTTMLATPPDKPADF 240 (403)
T ss_dssp HHHHHHHGGGSSSHHHHHTSCHHHHHHHHHHHHHHHHHHHHTGGGGTTTSHHHHHHHHHHHHHHHHHHHTTCCTTCTTHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99874123333465667764155578899999999999998476541274679999999999999999998456774667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~RD~~Maenl~wl~~~~~kiivwaHN~Hi~~~~~~~~~~~~~~G~~L~e~~G~~y~~IG~~~~~G~v~a~~~~~~~~~ 320 (403)
T d3b55a1 241 YLKHDIAMYENAKWTEEHLGKTIVWGHNGHVSKTNMLSFIYPKVAGQHLAEYYGKRYVSIGTSVYEGQYNVKNSDGEFGP 320 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSEEEEEEHHHHSSSCSCTTTCSSCHHHHHHHHHGGGEEEEEEEEEEEEEEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCEEECCCCCCCCCC
T ss_conf 77899999999999870689889995705425677554557554889999884874499999734640512567788663
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~v~~~~~~S~E~~l~~~~~~~~~ldlr~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~fDali~i~~~tP~ 400 (403)
T d3b55a1 321 YGTLKSDDPNSYNYIFGQVKKDQFFIDLRKANGVTKTWLNEQHPIFAGITTEGPDIPKTVDISLGKAFDILVQIQKVSPS 400 (403)
T ss_dssp EEECCCCCTTSHHHHHHTSSCSEEEEEGGGCCHHHHHHHTSCEEEECCCSBCBTTBCSEEEECHHHHCSEEEEEEEECBC
T ss_pred EEECCCCCCCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHCCEEEEECCCCCC
T ss_conf 02227999988999997369986898764365331557630424045357898666754058859969589996565745
Q ss_pred --E
Q ss_conf --8
Q 001511 467 --K 467 (1064)
Q Consensus 467 --~ 467 (1064)
.
T Consensus 401 ~~~ 403 (403)
T d3b55a1 401 QVH 403 (403)
T ss_dssp CBC
T ss_pred CCC
T ss_conf 369
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=30405.04 Aligned_cols=1 Identities=0% Similarity=-1.290 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~p~~~~g~~~i~~~f~w~~~~i~~e~~~yL~~lG~taIwl~P~~e~~~~~~~~~~~y~gY~~~dY~v~~~~Gt~~dfk 80 (403)
T d1hx0a2 1 EYAPQTQSGRTSIVHLFEWRWVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFR 80 (403)
T ss_dssp CCSCCCCTTCCEEEEETTCCHHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHH
T ss_pred CCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHH
T ss_conf 98998889972589700076899999999999981998799496815766788999876003687771489999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~Lv~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (403)
T d1hx0a2 81 DMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDC 160 (403)
T ss_dssp HHHHHHHHTTCEEEEEECCSEEEETTCCCBSCBSSCCCBBGGGTBBTTTTBCGGGBCTTTCCSTTSBCCCTTCHHHHHHS
T ss_pred HHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 99999986699799997124466655321345666764543334577788887667887656788874655771002331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~l~~~pDLn~~np~Vr~~~~~~l~~~~~~GvdGfR~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~ 240 (403)
T d1hx0a2 161 QLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRIDASKHMWPGDIKAVLDKLHNLNTNWFPAGSRPFIFQEVIDLGGE 240 (403)
T ss_dssp BGGGEEEBCTTSHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCHHHHHHHHTTCCCCCTTTSCTTCCCEEEECCCCCSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCC
T ss_conf 23445864679999999999999999873977653232321678899999999875073200156775278877516830
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Fl~NHD~~R~~~~~~~~~~~~~~~~~ 320 (403)
T d1hx0a2 241 AIKSSEYFGNGRVTEFKYGAKLGTVVRKWSGEKMSYLKNWGEGWGFMPSDRALVFVDNHDNQRGHGAGGSSILTFWDARL 320 (403)
T ss_dssp SSCGGGGTTTSEEECHHHHHHHHHHHTTCTTCCGGGGGGTTGGGTCCCGGGEEECSCCTTGGGTCSSCGGGCCCGGGHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 21022025887102243223245787641620478998750111368845057863467775556678864144456789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~a~af~lt~p~G~P~iy~gy~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~r~~~i~~m~~frn~ 400 (403)
T d1hx0a2 321 YKIAVGFMLAHPYGFTRVMSSYRWARNFVNGEDVNDWIGPPNNNGVIKEVTINADTTCGNDWVCEHRWREIRNMVWFRNV 400 (403)
T ss_dssp HHHHHHHHHHSCSSEEEEEECBCCCCCEETTEETTTTCCSSEETTEECCCCBCTTSCBCTTBCCGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999987898164676306644544577667778999888874688747767778518777668999999998663
Q ss_pred --E
Q ss_conf --8
Q 001511 467 --K 467 (1064)
Q Consensus 467 --~ 467 (1064)
-
T Consensus 401 ~~g 403 (403)
T d1hx0a2 401 VDG 403 (403)
T ss_dssp TTT
T ss_pred CCC
T ss_conf 679
|
| >d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=30336.59 Aligned_cols=1 Identities=100% Similarity=1.500 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~~gPL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~~n~~K~si~ldl~~~~G~~~~~ 80 (402)
T d1xk7a1 1 LPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFL 80 (402)
T ss_dssp CCCCCCSTTTTCEEEEECCSSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHHHTTTCEEEEECTTSHHHHHHHH
T ss_pred CCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHHHHHHH
T ss_conf 98899969999888883780289999999998299599989999997434588516773899859998693978999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~Lv~~aDv~i~n~rpg~~~~lGl~~~~L~~~nP~lI~~sisgfG~~~~gp~~~~~~~D~~~qA~sG~~~~~G~~~~p~~~ 160 (402)
T d1xk7a1 81 KLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPA 160 (402)
T ss_dssp HHHTTCSEEEEECSSSHHHHTTCCHHHHHHHCTTCEEEEEESSCSSSCTTTTTSCCCHHHHHHHHTSGGGSEETTEECCC
T ss_pred HHHHHCCCCEEEECCCCCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 98750587534101222113465421001002443213655565776765467777663212210000101455455433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~d~~~g~~aa~ailaAL~~r~~TG~Gq~VdvSm~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~y~~~D 240 (402)
T d1xk7a1 161 FPYTADYFSGLTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYKCAD 240 (402)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHTHHHHHHHHTTSCCCCCBBTTBCSSBTTEEEEEETT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 44322123124431345777640345788665443432201344321111000123332222234677422458553146
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 G~i~i~~~~~~~~~~l~~~~g~~~l~~dp~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~t~~e~~~~l~~~gvp~apV~ 320 (402)
T d1xk7a1 241 GYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLATHTIAEVKERFAELNIACAKVL 320 (402)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCGGGTTSSSSCTTCCCCBTTTSTTHHHHHHHHHHHHHTSCHHHHHHHHHHTTCEEEECC
T ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEECCC
T ss_conf 76211233222222201121001222322233322221000366778899999999865021145566550795010478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~e~~~dpq~~~r~~~~~~~~~~~g~~~~p~~p~~fs~t~~~~~~~aP~lGeht~eIL~eLG~s~~eI~~L~~~gvi~~ 400 (402)
T d1xk7a1 321 TVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKV 400 (402)
T ss_dssp CGGGSTTCHHHHHHTCEEEEECTTSCEEEEECCSSCCSSSCCCCCCCCCCTTTTHHHHHHHTTCCHHHHHHHHHTTSEEC
T ss_pred CHHHHHHCHHHHHHCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCEEC
T ss_conf 99998779898971999988768997667305770158999887899999985499999986999999999998829868
Q ss_pred -E
Q ss_conf -8
Q 001511 467 -K 467 (1064)
Q Consensus 467 -~ 467 (1064)
+
T Consensus 401 ~~ 402 (402)
T d1xk7a1 401 ED 402 (402)
T ss_dssp CC
T ss_pred CC
T ss_conf 89
|
| >d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Adenylosuccinate lyase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=100.00 E-value=0 Score=30335.97 Aligned_cols=1 Identities=0% Similarity=-1.556 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~sP~d~ry~~~~~~~ifs~~~~~~~~l~ve~a~a~a~~e~G~ip~~~a~~i~~~~~d~~~i~~~e~~~~hdv~a~~~~l 80 (402)
T d1dofa_ 1 HVSPFDWRYGSEEIRRLFTNEAIINAYLEVERALVCALEELGVAERGCCEKVNKASVSADEVYRLERETGHDILSLVLLL 80 (402)
T ss_dssp CCCGGGTTSSCHHHHTTSSHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHCCCCTTTC--------CHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 92987656498899987294999999999999999999874989889999998723388999999988589804799998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~vH~G~TsnDi~~ta~~l~~r~~~~~l~~~l~~l~~~L~~~a~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~ 160 (402)
T d1dofa_ 81 EQKSGCRYVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYY 160 (402)
T ss_dssp HHHHCCSCTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 65347888502676487661598999986466788899999999999987640211003765256554229988888999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~l~r~~~rl~~~~~~~~~~~gGa~g~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~rd~~~e~~~~L~~~a~~L~kia 240 (402)
T d1dofa_ 161 ELYIACRQLALAEEFIRAKIGGAVGTMASWGELGLEVRRRVAERLGLPHHVITTQVAPRESFAVLASALALMAAVFERLA 240 (402)
T ss_dssp HHHHHHHHHHHHHHHCCBCCCCTTSSCGGGGGGHHHHHHHHHHHTTCCBCSSCSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999875034566552224430445789999887345555235555541001688999888898999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~Di~~~s~~e~ge~~e~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~ 320 (402)
T d1dofa_ 241 VEIRELSRPEIGEVVEGGGGSSAMPHKANPTASERIVSLARYVRALTHVAFENVALWHERDLTNSANERVWIPEALLALD 320 (402)
T ss_dssp HHHHHHTSTTTCSEESCC---------CCCHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999717753541134675410258878428998724378887888999875124432120245655302532599999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~l~~~~~~l~~l~vn~erm~~~l~~s~~~i~ae~~~~~L~~~gl~~~~Ah~~v~~~~~~a~e~~k~~~e~l~~d~~~l~ 400 (402)
T d1dofa_ 321 EILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAKEVKALTFEYQKWPVERLIEDALSLK 400 (402)
T ss_dssp HHHHHHHHHHHHCEECHHHHHHHHHHHHHHHCHHHHHHHHHHTTCCHHHHHHHHTTCCCCCCGGGGCCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHCC
T ss_conf 99999999876499989999999985158667999999999869999999999999999999958985999860825147
Q ss_pred -E
Q ss_conf -8
Q 001511 467 -K 467 (1064)
Q Consensus 467 -~ 467 (1064)
.
T Consensus 401 l~ 402 (402)
T d1dofa_ 401 LC 402 (402)
T ss_dssp CC
T ss_pred CC
T ss_conf 89
|
| >d2g5da1 b.52.1.4 (A:40-441) Membrane-bound lytic murein transglycosylase A, MLTA {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double psi beta-barrel superfamily: Barwin-like endoglucanases family: MLTA-like domain: Membrane-bound lytic murein transglycosylase A, MLTA species: Neisseria gonorrhoeae [TaxId: 485]
Probab=100.00 E-value=0 Score=30335.31 Aligned_cols=1 Identities=0% Similarity=-0.959 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 p~~p~~~p~pa~~~~~~~~a~~~~vsf~~LpGW~~dd~~~al~af~~sC~~l~~~~~w~~~C~~a~~~~~~~~~aR~Ffe 80 (402)
T d2g5da1 1 PDRPAGIPDPAGTTVAGGGAVYTVVPHLSMPHWAAQDFAKSLQSFRLGCANLKNRQGWQDVCAQAFQTPIHSFQAKRFFE 80 (402)
T ss_dssp CCCCCCCCCCTTCEEEETTEEEEECCGGGSTTCTTCCHHHHHHHHHHHHHHHTTSTTCHHHHHHHHTSCSSHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 98887899997654567764234546888889740139999999999877503246789999999717998099999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~F~p~~v~~~g~~~Gl~TGYYEP~l~gS~~r~~~y~~PlY~~P~DLv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
T d2g5da1 81 RYFTPWQVAGNGSLAGTVTGYYEPVLKGDGRRTERARFPIYGIPDDFISVPLPAGLRGGKNLVRIRQTGKNSGTIDNAGG 160 (402)
T ss_dssp HHEEEEEEEETTBSCEEEEEEEECEEEEESSCCSSCCEEEEBSCTTCEEEECC--------CEEECCCBTTBCC------
T ss_pred HHCEEEEEECCCCCCEEEEEEECEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 72789998407987525877403057653366888887734589532225555433322222222334455443334444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~dl~~~~~~~~~~~~~gR~~~~~~vPY~~R~eI~~g~l~~~~~elaW~~Dpvd~FFLqIQGSGrl~l~dG~~~rvgY 240 (402)
T d2g5da1 161 THTADLSRFPITARTTAIKGRFEGSRFLPYHTRNQINGGALDGKAPILGYAEDPVELFFMHIQGSGRLKTPSGKYIRIGY 240 (402)
T ss_dssp -EEECTTTSCCCSCCSEEEEEEETTEEEECCCHHHHHTTTTTTSSCEEEEESCHHHHHHHHHHSCEEEECTTSCEEEEEE
T ss_pred CCCCCCCCCCCCCCCHHHEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCHHHHHHEEECCCEEEEECCCCEEEEEE
T ss_conf 33354112563222101100102785134776999864875677745788378255352665263699937999899986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ag~NG~pY~sIGr~Li~~G~i~~~~~Smq~Ir~Wl~~nP~~~~ell~~NpsYVFFr~~~~~~~~GP~Ga~gvpLtp~rSi 320 (402)
T d2g5da1 241 ADKNEHPYVSIGRYMADKGYLKLGQTSMQGIKAYMRQNPQRLAEVLGQNPSYIFFRELAGSGGDGPVGALGTPLMGEYAG 320 (402)
T ss_dssp EEECCCCCCCHHHHHHTTTSSCTTSCSHHHHHHHHHHCGGGHHHHHTTCCCCEEEEEC-----CCCBCTTSSBCCTTSEE
T ss_pred CCCCCCCCEEHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 36789965108999976698671128999999999979799999997499749988778888899864367756677046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 AvD~~~iPlG~pv~l~t~~p~~~~~~~rL~iAQDTGgAIkG~~R~D~f~G~G~~Ag~~AG~mk~~G~~~~LlPk~~~p~~ 400 (402)
T d2g5da1 321 AIDRHYITLGAPLFVATAHPVTRKALNRLIMAQDTGSAIKGAVRVDYFWGYGDEAGELAGKQKTTGYVWQLLPNGMKPEY 400 (402)
T ss_dssp EECTTTSCTTCEEEEEEECTTTCSEEEEEEEEEEECTTCCSSSEEEEEEEESHHHHHHHHHCEEEEEEEEEEETTCCCCC
T ss_pred EECCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf 61776257887389974577778850027998515765348861698751888999887452575259999528888677
Q ss_pred -E
Q ss_conf -8
Q 001511 467 -K 467 (1064)
Q Consensus 467 -~ 467 (1064)
-
T Consensus 401 ~~ 402 (402)
T d2g5da1 401 RP 402 (402)
T ss_dssp CC
T ss_pred CC
T ss_conf 97
|
| >d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: N-acylglucosamine (NAG) epimerase domain: N-acyl-D-glucosamine 2-epimerase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=30332.56 Aligned_cols=1 Identities=0% Similarity=0.802 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~ilpfW~~~~~D~~~GGf~~~ld~dg~~~~~~k~~~~~~R~l~~fs~a~~~~~~~~~~~~ 80 (402)
T d1fp3a_ 1 MEKERETLQAWKERVGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGRQVWMYCRLYRKLERFHRPEL 80 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBCTTTSSBCCCBCTTSCBSCCCEEHHHHHHHHHHHHHHHHHCGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 94168999999999999999999878855807678972143789998579886365549999999999997463489899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~a~~g~~~L~~~~~~d~~~Gg~~~~vd~dG~~~~~~k~~Yd~Af~l~a~a~~~~~tg~~~~~~~a~~~~~~i~~~~~~ 160 (402)
T d1fp3a_ 81 LDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVRE 160 (402)
T ss_dssp HHHHHHHHHHHHHHTBSSTTSCCBCSEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999981883589998898878999967654564120899999899886039989999999999999998421
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~g~~~~~~~~~~~~~g~~~~m~l~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 240 (402)
T d1fp3a_ 161 DPSGLGRPQLPGAVASESMAVPMMLLCLVEQLGEEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDGEELSGCL 240 (402)
T ss_dssp CGGGGCCCCCTTSCCEEETHHHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHTTEETTTTEECSEEETTSCBCCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 56888741247875434354179999999997343430579999999999998875016541257764314667666834
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~i~pGh~~e~~wLll~a~~~~~~~~~~~~a~~~~~~~~~~~g~d~~~ggl~~~~~~~g~~~~~~~~~~k~~W~qaE~i 320 (402)
T d1fp3a_ 241 GRHQNPGHALEAGWFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPTQLEWAMKLWWPHSEAM 320 (402)
T ss_dssp HHEECHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTHHHHHHHBCTTTCSBCSCEETTSCCCSSTTTTCEEHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 47278502359999999999873990479999999999999829557899588875378886655441377787899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~a~l~ly~~tgd~~~l~~a~~l~~~~~~~f~D~~~G~W~~~~~~~g~~~~~~k~~p~~~~YH~~ral~~~~~~l~~~~~~ 400 (402)
T d1fp3a_ 321 IAFLMGYSESGDPALLRLFYQVAEYTFRQFRDPEYGEWFGYLNREGKVALTIKGGPFKGCFHVPRCLAMCEEMLSALLSR 400 (402)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCTTTSSBCCEECTTSCEEECCSSCSSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999987049989999999999999986877999766743899989986677888898461899999999999999851
Q ss_pred -E
Q ss_conf -8
Q 001511 467 -K 467 (1064)
Q Consensus 467 -~ 467 (1064)
.
T Consensus 401 ~~ 402 (402)
T d1fp3a_ 401 LA 402 (402)
T ss_dssp HC
T ss_pred CC
T ss_conf 39
|
| >d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome P450-ERYF species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=100.00 E-value=0 Score=30331.37 Aligned_cols=1 Identities=0% Similarity=-0.792 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~f~~dpy~~y~~lr~~gPv~~~~~~g~~~~vvt~~e~v~~vl~d~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 80 (402)
T d1z8oa1 1 TVPDLESDSFHVDWYRTYAELRETAPVTPVRFLGQDAWLVTGYDEAKAALSDLRLSSDPKKKYPGVEVEFPAYLGFPEDV 80 (402)
T ss_dssp CCCBTTSGGGTSSHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCTTEECCTTCCCTTCCCCCGGGTTCCHHH
T ss_pred CCCCCCCHHHHHCHHHHHHHHHHCCCEEEEEECCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 98787974566594999999983499789850895389988999999996497534483112565544564223442667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~l~~~dg~~H~~~R~~l~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 160 (402)
T d1z8oa1 81 RNYFATNMGTSDPPTHTRLRKLVSQEFTVRRVEAMRPRVEQITAELLDEVGDSGVVDIVDRFAHPLPIKVICELLGVDEK 160 (402)
T ss_dssp HHHHSSSGGGCCTTHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHHHHHTSCSSSEEEHHHHTTTHHHHHHHHHHTTCCGG
T ss_pred HHHHCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 77741562016577776420212210243205677888899999875203222223333212330344556666300377
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~d~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~aG 240 (402)
T d1z8oa1 161 YRGEFGRWSSEILVMDPERAEQRGQAAREVVNFILDLVERRRTEPGDDLLSALIRVQDDDDGRLSADELTSIALVLLLAG 240 (402)
T ss_dssp GTTTHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHCEETTTEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 88888888889875065112566788899999999988999728887779999985664288787789888888873064
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~dTt~~~l~~~l~~l~~~P~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~~~d 320 (402)
T d1z8oa1 241 FEASVSLIGIGTYLLLTHPDQLALVRRDPSALPNAVEEILRYIAPPETTTRFAAEEVEIGGVAIPQYSTVLVANGAANRD 320 (402)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHCGGGHHHHHHHHHHHTCSSCCEEEEESSCEEETTEEECTTCEEEECHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 54315678888888765058999975013445430155654220244332134567555784134543022334452168
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 p~~f~dP~~F~PeR~~~~~lpFG~G~r~C~G~~lA~~el~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~ 400 (402)
T d1z8oa1 321 PKQFPDPHRFDVTRDTRGHLSFGQGIHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLRGIDHLPVRL 400 (402)
T ss_dssp TTTSSSTTSCCTTSCCTTCCTTCSSTTCCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCCCCCSSSCCCSCCEEET
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCCCCEEEEE
T ss_conf 53278911228899999988989986578139999999999999999967977578887876352787668988557996
Q ss_pred -E
Q ss_conf -8
Q 001511 467 -K 467 (1064)
Q Consensus 467 -~ 467 (1064)
-
T Consensus 401 ~~ 402 (402)
T d1z8oa1 401 DG 402 (402)
T ss_dssp TC
T ss_pred CC
T ss_conf 59
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=100.00 E-value=0 Score=30260.41 Aligned_cols=1 Identities=0% Similarity=-1.290 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~pi~~lv~~ll~~A~~~~ASDIHi~~~~~~~~V~~RidG~L~~~~~~~~~~~~~l~~~~ 80 (401)
T d1p9ra_ 1 DFFSLAEELPQNEDLLESEDDAPIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSLLVSRV 80 (401)
T ss_dssp CHHHHHHC-------------CHHHHHHHHHHHHHHHHTCSEEEEEEETTEEEEEEEETTEEEEEECCCGGGHHHHHHHH
T ss_pred CHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCEEEECCCCCCCHHHHHHHHH
T ss_conf 95464312787344654257767999999999999982980599981788846999989998887888855699999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~a~~~~~~~~~~q~g~~~~~~~~~~i~~Rv~~~p~~~g~~~vlRl~~~~~~~~~l~~LG~~~~~~~~l~~l~~~~~Gl 160 (401)
T d1p9ra_ 81 KVMAKLDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGERVVMRLLDKNATRLDLHSLGMTAHNHDNFRRLIKRPHGI 160 (401)
T ss_dssp HHHTTCCTTCCSSCEEEEEEC-----CEEEEEEEECCTTSCEEEECCEETTTTCCCGGGSCCCHHHHHHHHHHHTSSSEE
T ss_pred HHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCE
T ss_conf 98513678887530120022313894488754442202344566543112332001443013577789999998641054
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 iLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEiRd~~ 240 (401)
T d1p9ra_ 161 ILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLE 240 (401)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHH
T ss_pred EEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCHH
T ss_conf 89876787774477999866625787469996267434567887026558767799999999984138889845768759
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ta~~a~~aa~tGhlV~tTlHa~~a~~~~~Rl~~~~~~~~~l~~~l~~vv~QrLv~~lCp~Ck~~~~~~~~~~~~~~~~~~ 320 (401)
T d1p9ra_ 241 TAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKEQRKLFDSKKK 320 (401)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHHHHHHEEEEEEEEEEEEECTTTCEEEECCHHHHTTC-----
T ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 99999999724985899833676676654321002445667777898874205342188867688999999962354545
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~~GC~~C~~~Gy~GR~~v~Evl~~d~~l~~~I~~~~~~~~l~~~~~~g~~tl~~~a~~~v~~G~~s~eEv~R~ 400 (401)
T d1p9ra_ 321 EPLILYRATGCPKCNHKGYRGRTGIHELLLVDDALQELIHSEAGEQAMEKHIRATTPSIRDDGLDKVRQGITSLEEVMRG 400 (401)
T ss_dssp CCCEEEECCCCSSSCSSSEEEEEEEEEEEECCHHHHHHHHTTCCHHHHHHHHHTTCCCHHHHHHHHHHTTSSCHHHHHHH
T ss_pred CCEEEEECCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHC
T ss_conf 66379808996303799888732999998189999999984998999999998099029999999998599989998243
Q ss_pred E
Q ss_conf 8
Q 001511 467 K 467 (1064)
Q Consensus 467 ~ 467 (1064)
+
T Consensus 401 ~ 401 (401)
T d1p9ra_ 401 S 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: UDP-glucosyltransferase GtfB species: Amycolatopsis orientalis [TaxId: 31958]
Probab=100.00 E-value=0 Score=30258.93 Aligned_cols=1 Identities=0% Similarity=1.334 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 mkil~~~~gt~Gh~~P~lala~~L~~~Gh~V~~~~~~~~~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (401)
T d1iira_ 1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAERLAEVGVPHVPVGPSARAPIQRAKPLTAEDVRRFTTEAI 80 (401)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEECCC-------CCSCCCHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 97999889872689999999999998799899996830677898769748977850654541035200799999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (401)
T d1iira_ 81 ATQFDEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPSPYYPPPPLGEPSTQDTIDIPAQWERNNQ 160 (401)
T ss_dssp HHHHHHHHHHTTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCC---------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHH
T ss_conf 99999999976147642774124257888988887535422344565445532356412466542100001135566566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (401)
T d1iira_ 161 SAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTDHPWVAADPVLAPLQPTDLDAVQTGAWILPDERPLSPELAAFLDAGPPP 240 (401)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCSSCEECSCTTTSCCCCCSSCCEECCCCCCCCCCCCCHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCE
T ss_conf 77877778888999984476410233210231023235644467777654332236755676555677888763148975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 i~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~V~hgG~~t~~Eal~~ 320 (401)
T d1iira_ 241 VYLGFGSLGAPADAVRVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNHQVLFGRVAAVIHHGGAGTTHVAARA 320 (401)
T ss_dssp EEEECC---CCHHHHHHHHHHHHHTTCCEEECTTCTTCCCSSCGGGEEECSSCCHHHHGGGSSEEEECCCHHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHCCEEEECCCCHHHHHHHHH
T ss_conf 99715754665689999999999769807984267764233578978997025879999545899963771699999981
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 GvP~v~~P~~~DQ~~na~~l~~~G~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~a~~~~~~~~~~~~~~aa~~i~~~i~r 400 (401)
T d1iira_ 321 GAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATALTPETHARATAVAGTIRTDGAAVAARLLLDAVSR 400 (401)
T ss_dssp TCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHT
T ss_pred CCCEEECCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 99999806614179999999987988876847899999999999996979999999999998750839999999999846
Q ss_pred E
Q ss_conf 8
Q 001511 467 K 467 (1064)
Q Consensus 467 ~ 467 (1064)
+
T Consensus 401 ~ 401 (401)
T d1iira_ 401 E 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp154a1 monooxygenase species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=0 Score=30253.98 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~dp~~~d~~~~~~~lr~~Gpv~~~~~~g~~~vvv~~~~~v~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (401)
T d1odoa_ 1 ALVLDPTGADHHTEHRTLREGGPATWVDVLGVQAWSVSDPVLLKQLLTSSDVSKDARAHWPAFGEVVGTWPLALWVAVEN 80 (401)
T ss_dssp CEECCTTCTTHHHHHHHHHTTCSEEEEEETTEEEEEECCHHHHHHHTTCTTEESCHHHHCTTHHHHTTTCTTTHHHHCCS
T ss_pred CEECCCCCCCHHHHHHHHHHHCCEEEEECCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 94358899981999999996399899964991199988999999996397724366666532223455541123304787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 l~~~~g~~h~~~R~~l~~~fs~~~v~~~~~~i~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~~~~~~~~ 160 (401)
T d1odoa_ 81 MFTAYGPNHRKLRRLVAPAFSARRVDAMRPAVEAMVTGLVDRLAELPAGEPVDLRQELAYPLPIAVIGHLMGVPQDRRDG 160 (401)
T ss_dssp GGGCCHHHHHHHHHTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCEEHHHHTTTHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHH
T ss_conf 62388599999999877651721477777788999999976422013332222321000000011221235653112123
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ei~~~~~~l~~~g~~t 240 (401)
T d1odoa_ 161 FRALVDGVFDTTLDQAEAQANTARLYEVLDQLIAAKRATPGDDMTSLLIAARDDEGDGDRLSPEELRDTLLLMISAGYET 240 (401)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 44455554310102578899999999999987664136776642232112333334689799999999999998656521
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~e~~R~~p~~~~~~~~~~~~d~~~~~G~~ip~Gt~v~~~~~~~hrd~ 320 (401)
T d1odoa_ 241 TVNVIDQAVHTLLTRPDQLALVRKGEVTWADVVEETLRHEPAVKHLPLRYAVTDIALPDGRTIARGEPILASYAAANRHP 320 (401)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTSSCHHHHHHHHHHHSCSBSCEEEEEESSCEECTTSCEECTTCEEEECHHHHTTCT
T ss_pred HHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCEEECCCCCCCCCHHHHHCCC
T ss_conf 02355543201343214431001233311000001111112455333322346525229779617952324488870772
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~dp~~F~PeR~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~l~~~~~~~~~~~~~~~~~~~~lpv~~~ 400 (401)
T d1odoa_ 321 DWHEDADTFDATRTVKEHLAFGHGVHFCLGAPLARMEVTLALESLFGRFPDLRLADPAEELPPVPSLISNGHQRLPVLLH 400 (401)
T ss_dssp TTSTTTTSCCTTCSCCCCCTTCSSTTSCTTHHHHHHHHHHHHHHHHHHCTTCEESCTTSCCCBCSCSSBCCBSCCEEECC
T ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 22896543287878999987789884783599999999999999999779868899877771467875579874059983
Q ss_pred E
Q ss_conf 8
Q 001511 467 K 467 (1064)
Q Consensus 467 ~ 467 (1064)
-
T Consensus 401 ~ 401 (401)
T d1odoa_ 401 A 401 (401)
T ss_dssp -
T ss_pred C
T ss_conf 9
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=30257.68 Aligned_cols=1 Identities=0% Similarity=-1.590 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~m~~~~~~~~~~~l~~~~~~g~~r~~~~i~~~~g~~v~~~dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~ 80 (401)
T d1fc4a_ 1 GSHMRGEFYQQLTNDLETARAEGLFKEERIITSAQQADITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMA 80 (401)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCSCSSSEEEBTTSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 96044899999999999999759987513304788884893499889998765402546899999999999998198865
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~sr~~~g~~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~d 160 (401)
T d1fc4a_ 81 SVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANND 160 (401)
T ss_dssp SCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTTC
T ss_pred CCEEECCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHCCCCCCCCEEEEECCCC
T ss_conf 42131257088999999888761677447734445666789997457886899677643888705122575079975788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~di 240 (401)
T d1fc4a_ 161 MQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDI 240 (401)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSE
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHHCCCCCCCCCCCCCHHCCCCCCCEE
T ss_conf 47899999985514567159997577789895565057898875428189800210145145799850101268888729
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 i~~tl~Ka~gg~~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~g 320 (401)
T d1fc4a_ 241 ITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAG 320 (401)
T ss_dssp EEEESSSTTCSSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99651430156776111378789999871792665067888788998875431234689999999987899986401358
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~~~~pIv~v~~~~~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~lg~i 400 (401)
T d1fc4a_ 321 FTLAGADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLGVI 400 (401)
T ss_dssp CCBCCSSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 76379999879999799999999999999789059758899789998439999787799999999999999999984888
Q ss_pred E
Q ss_conf 8
Q 001511 467 K 467 (1064)
Q Consensus 467 ~ 467 (1064)
.
T Consensus 401 ~ 401 (401)
T d1fc4a_ 401 A 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-vancosaminyltransferase GftD species: Amycolatopsis orientalis [TaxId: 31958]
Probab=100.00 E-value=0 Score=30257.52 Aligned_cols=1 Identities=0% Similarity=1.832 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 mrIl~~~~gt~Ghv~P~l~lA~~L~~rGh~V~~~t~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (401)
T d1rrva_ 1 MRVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEVGVPHVPVGLPQHMMLQEGMPPPPPEEEQRLAAMT 80 (401)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEECSCCGGGCCCTTSCCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 94999889875689999999999998799899997834677898779748976870776421566543378999989999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (401)
T d1rrva_ 81 VEMQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLASPHLPPAYDEPTTPGVTDIRVLWEERAA 160 (401)
T ss_dssp HHHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCBCSCCCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999844898599982842668999999827974000000000102556423465556532001246788887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~v 240 (401)
T d1rrva_ 161 RFADRYGPTLNRRRAEIGLPPVEDVFGYGHGERPLLAADPVLAPLQPDVDAVQTGAWLLSDERPLPPELEAFLAAGSPPV 240 (401)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSCHHHHTTCSSCEECSCTTTSCCCSSCCCEECCCCCCCCCCCCCHHHHHHHHSSSCCE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHCCHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCEE
T ss_conf 77765478999999983785331255430354211011133203577788689788866655459989997522479839
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~I~hgG~~t~~Eal~ 320 (401)
T d1rrva_ 241 HIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTELVLPDDRDDCFAIDEVNFQALFRRVAAVIHHGSAGTEHVATR 320 (401)
T ss_dssp EECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTCCCSCCCTTEEEESSCCHHHHGGGSSEEEECCCHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHCCEEEECCCCHHHHHHHH
T ss_conf 99878644578899999999998626974899505443455457898899731481777621248886177248999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~GvP~l~~P~~~DQ~~na~~v~~~G~g~~l~~~~~~~~~L~~ai~~vl~~~~r~~a~~~~~~~~~~g~~~aa~~ie~~~~ 400 (401)
T d1rrva_ 321 AGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTVLAPETRARAEAVAGMVLTDGAAAAADLVLAAVG 400 (401)
T ss_dssp HTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHHTSHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred HCCCEEEECCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_conf 39998980661208999999998798897574789999999999998497999999999998755179999999999857
Q ss_pred E
Q ss_conf 8
Q 001511 467 K 467 (1064)
Q Consensus 467 ~ 467 (1064)
.
T Consensus 401 r 401 (401)
T d1rrva_ 401 R 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 6
|
| >d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum [TaxId: 56]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome P450epok species: Sorangium cellulosum [TaxId: 56]
Probab=100.00 E-value=0 Score=30256.94 Aligned_cols=1 Identities=0% Similarity=-1.290 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~p~~~~dP~~~~~~lr~~gPv~~~~~~~~~vvt~~~~v~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (401)
T d1q5da_ 1 DFKPFAPGYAEDPFPAIERLREATPIFYWDEGRSWVLTRYHDVSAVFRDERFAVSREEWESSAEYSSAIPELSDMKKYGL 80 (401)
T ss_dssp CCCTTSTTTTTCCHHHHHHHHHHCSEEEETTTTEEEECSHHHHHHHHTCTTEECCGGGSTTHHHHHHSSGGGHHHHHHST
T ss_pred CCCCCCHHHHHCCHHHHHHHHHCCCEEEECCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC
T ss_conf 97989867885949999999846998997999989983999999996598735475433454444655510233013651
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~dg~~h~~~Rk~l~~~fs~~~l~~~~~~i~~~~~~l~~~~~~~~~~d~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (401)
T d1q5da_ 81 FGLPPEDHARVRKLVNPSFTSRAIDLLRAEIQRTVDQLLDARSGQEEFDVVRDYAEGIPMRAISALLKVPAECDEKFRRF 160 (401)
T ss_dssp TTSCHHHHHHHHHHHGGGGSHHHHGGGHHHHHHHHHHHHHHHTTSSCEETTTTTGGGSHHHHHHHHTTCCGGGHHHHHHH
T ss_pred CCCCHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 46888889876320421134213566788889888888876531011111578776543101100001100237888888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~l~~l~~~~~~~~~~~~~~i~~~~~~~l~ag 240 (401)
T d1q5da_ 161 GSATARALGVGLVPRVDEETKTLVASVTEGLALLHGVLDERRRNPLENDVLTMLLQAEADGSRLSTKELVALVGAIIAAG 240 (401)
T ss_dssp HHHHHHHTTTTTSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999875112222101677888899999999999877754125644327889876304565207889999999987046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~etta~~l~~~l~~L~~~p~~~e~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~g~~ip~G~~v~~~~~~~~r 320 (401)
T d1q5da_ 241 TDTTIYLIAFAVLNLLRSPEALELVKAEPGLMRNALDEVLRFDNILRIGTVRFARQDLEYCGASIKKGEMVFLLIPSALR 320 (401)
T ss_dssp SHHHHHHHHHHHHHHHHCHHHHHHHHHCGGGHHHHHHHHHHHSCSBSSEEEEEESSCEEETTEEECTTCEEEEEHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 32024677778999975299999864465323343210000011134433323345620257666764067421002478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 dp~~f~dP~~F~PeR~~~~~lpFg~G~r~C~G~~lA~~e~~~~la~ll~rf~~~~l~~~~~~~~~~~~r~~~~l~v~~~p 400 (401)
T d1q5da_ 321 DGTVFSRPDVFDVRRDTSASLAYGRGPHVCPGVSLARLEAEIAVGTIFRRFPEMKLKETPVFGYHPAFRNIESLNVILKP 400 (401)
T ss_dssp CTTTSSSTTSCCTTSCCTTCCTTCCGGGCCTTHHHHHHHHHHHHHHHHHHCTTCEECSCCEECCCSSBCCEEECEEESSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEECCCCCCCCCCCCEEEEEC
T ss_conf 82227995434889999999998997558822999999999999999996799848899840678765686645399961
Q ss_pred E
Q ss_conf 8
Q 001511 467 K 467 (1064)
Q Consensus 467 ~ 467 (1064)
+
T Consensus 401 ~ 401 (401)
T d1q5da_ 401 S 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30256.34 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG 80 (401)
T d1a12a_ 1 KKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALG 80 (401)
T ss_dssp CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTC
T ss_pred CCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCEEECCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCC
T ss_conf 93106678999789889999699988889999886503577908999929999189889999679989999589998877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g 160 (401)
T d1a12a_ 81 RDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASG 160 (401)
T ss_dssp SCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEC
T ss_conf 44655664235542354220022011100101000345311202145655544666775431001100168850699820
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~ 240 (401)
T d1a12a_ 161 NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 240 (401)
T ss_dssp SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCC
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCEEEEEECCCE
T ss_conf 35225650378500346687662288875344567755544335652000035677778439999936876999955981
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~ 320 (401)
T d1a12a_ 241 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTL 320 (401)
T ss_dssp EEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEE
T ss_pred EEEECCCCEECCCCCCCCCCEECCCCCCCCCCCEEEEEEEEECCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCEE
T ss_conf 86512221020354566310000010123554036999851012013561489788840334675678862333558888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 i~~~~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~~~~~~v~~v~~G~~hs~~l~~d~~~ 400 (401)
T d1a12a_ 321 ISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 400 (401)
T ss_dssp CCSSSSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred CCCCCCEEEEEEECCEEEEEECCCEEEEEECCCCCCCCCCCCCCEECCEEEECCCCCCCEEEEEEECCCEEEEEEECCCC
T ss_conf 57999829999308879999489969999259988778999988860789643578998899999752439999979966
Q ss_pred E
Q ss_conf 8
Q 001511 467 K 467 (1064)
Q Consensus 467 ~ 467 (1064)
.
T Consensus 401 ~ 401 (401)
T d1a12a_ 401 S 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=0 Score=30255.94 Aligned_cols=1 Identities=100% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~p~d~i~~~~~~~~~d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~ai 80 (401)
T d7aata_ 1 SSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRAS 80 (401)
T ss_dssp CCSSTTCCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 97010689799986999999983778999588617877688899898789999999996289888889977789999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 a~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~ 160 (401)
T d7aata_ 81 AELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSL 160 (401)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEE
T ss_pred HHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 99984247865576753885462578899999876674358985599816777640258998599689985424446665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~ 240 (401)
T d7aata_ 161 DFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 240 (401)
T ss_dssp CHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred CHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf 37888888722777618999647889855458999999999987356379998636144314886553356666532201
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 320 (401)
T d7aata_ 241 DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMAD 320 (401)
T ss_dssp CCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 13406751330005515531021261888889888888888764033563057888998841787889999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~e~~~~L~~e~gV~~~pg~Ris~a~~~~~~i~~la~ai~~v~ 400 (401)
T d7aata_ 321 RIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999857988863577997589953979999999998299998897179852699888999999999974
Q ss_pred E
Q ss_conf 8
Q 001511 467 K 467 (1064)
Q Consensus 467 ~ 467 (1064)
+
T Consensus 401 k 401 (401)
T d7aata_ 401 K 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Hormone binding domain of the atrial natriuretic peptide receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30254.38 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~a~~~~~i~igvllP~tg~~~~~~~~~~~a~~lAv~~iN~~g~~~~~~~~g~~i~~~~~D~~~~~~~~~~~~~~l~~~~~ 80 (401)
T d1jdpa_ 1 EALPPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVAAARG 80 (401)
T ss_dssp CCCCCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 99899722899997799940221678999999999999866786556789948999998289997999999999997366
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~v~~iiG~~~s~~~~a~~~~~~~~~ip~is~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~al~~~l~~~~~~~v~il~~ 160 (401)
T d1jdpa_ 81 AKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYS 160 (401)
T ss_dssp CCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 88089999987503678878888619854631445542122345677279831546889999999877517737999995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~i~~~~~~~g~~~~~~~ 240 (401)
T d1jdpa_ 161 DDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYA 240 (401)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTSCCCHHHHHHHHHHHCSEEEEESCHHHHHHHHHHHHHTTCTTTTCE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 68652057899998888736534899740245676268999998632574069999346889999999998188888769
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~a~~~yDav 320 (401)
T d1jdpa_ 241 FFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFHDAI 320 (401)
T ss_dssp EEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 99633114643347301025542367888865414212458898689999999999984067776666207889999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~l~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~Gdr~~~~~~~~~~~~~~g~~~~Vg~~~~~~~~~~~~ 400 (401)
T d1jdpa_ 321 LLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRYGDFSVIAMTDVEAGTQEVIGDYFGKEGRFEMR 400 (401)
T ss_dssp HHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEECTTSBBCCEEEEEEEEETTTTEEEEEEEEETTTTEEEEC
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEECCCEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCEEEEE
T ss_conf 99999999998568999889999999867917717668998999882576799999997898799999998997669974
Q ss_pred E
Q ss_conf 8
Q 001511 467 K 467 (1064)
Q Consensus 467 ~ 467 (1064)
-
T Consensus 401 ~ 401 (401)
T d1jdpa_ 401 P 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Terpenoid cyclases/Protein prenyltransferases family: Protein prenyltransferases domain: Protein farnesyltransferase, beta-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30256.21 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~t~ts~~q~~~e~~~~~~~~~~~~~~~~~~~~L~r~~H~~y~~~~L~~lp~~~~~lD~~r 80 (401)
T d2h6fb1 1 EPLYSLRPEHARERLQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYECLDASR 80 (401)
T ss_dssp CCCGGGSGGGGGGSCCCTTCCCHHHHHHHHHHHHHHHHHHTTCBTTBCCCCCCCHHHHHHHHHHHTTEECGGGGGGTTCH
T ss_pred CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCC
T ss_conf 97345467664331468898637889999999999999987534037865532599999999999986988760625462
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~l~yw~l~~L~LL~~~~~~~~~~~ii~~l~~~q~~~GGF~g~pg~~~hla~Ty~Al~~L~ilg~~~~~~~idR~~i~~f 160 (401)
T d2h6fb1 81 PWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQY 160 (401)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 99999999999985998538999999999999718999968999987433999999999997177521023339999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 L~slQ~pDGsF~~~~~ge~D~R~~Y~Av~i~~lL~~~~~~~~~~~~~~I~scQ~~dGGfg~~pg~EaHgg~TfCalAaL~ 240 (401)
T d2h6fb1 161 LYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALV 240 (401)
T ss_dssp HHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99951888980002367766212699999999958997778999999999806888874578788763539899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 lL~~~~~~d~~~l~~WL~~RQ~~~eGGF~GR~nKlvD~CYSfW~ga~l~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yiL 320 (401)
T d2h6fb1 241 ILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYIL 320 (401)
T ss_dssp HHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 84788645899999999973778778437887887635788899889999999861246631113333437999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~Q~~~GGf~d~Pg~~pD~yHT~y~L~gLSl~~~~~~~~~~~~~~~~~~~~~l~~~~P~~~i~~~~~~~~~~~f~~~p~ 400 (401)
T d2h6fb1 321 MCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATTYFLQKPV 400 (401)
T ss_dssp HHSBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHHEEEETTEEEECCCSSGGGCCCCCCTTTSSCHHHHHHHHHHHHTSCC
T ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 97478999948897899870088899999986577676676643235775346633798615889999999999985899
Q ss_pred E
Q ss_conf 8
Q 001511 467 K 467 (1064)
Q Consensus 467 ~ 467 (1064)
-
T Consensus 401 ~ 401 (401)
T d2h6fb1 401 P 401 (401)
T ss_dssp T
T ss_pred C
T ss_conf 9
|
| >d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RNB domain-like domain: Ribonuclease II family protein DR0020 species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=0 Score=30253.18 Aligned_cols=1 Identities=0% Similarity=-0.726 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~p~~~~~~~v~ve~~~~~~~~~~~i~~~lg~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 80 (401)
T d2r7da2 1 QPELTPAQRTEVELLARGRADKSRVLRDLKLPETPEAAHALLLRLGVWDEARTPYADRLRAALNAVELPVPDFDPAEERL 80 (401)
T ss_dssp CCCCCHHHHHHHHHHHTTSCSCCHHHHHTTCCCSHHHHHHHHHHHTSSCTTCCCHHHHTTCCCSCCCCCCCCCCTTSCCE
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99899888899998123899973124522999996569999998199865566780999999863267888743334661
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 Dlr~l~~~tID~~~a~D~DDAisie~~~~g~~~l~VHIADVs~~v~~~s~Ld~eA~~R~tSvYlp~~~~pMLP~~ls~~~ 160 (401)
T d2r7da2 81 DLTHLPTFAIDDEGNQDPDDAVGVEDLGGGLTRLWVHVADVAALVAPDSPLDLEARARGATLYLPDRTIGMLPDELVAKA 160 (401)
T ss_dssp ECTTSCEEEEECTTCCCCCEEEEEEECSTTCEEEEEEEECGGGTCCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHHHH
T ss_pred CCCCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEECCHHHHCCCCCHHHHHHHHHCCCCCCCCCEEECCCHHHHCCC
T ss_conf 52028679988998864421036787479968999961356662067776899999858464089972423758874132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 SL~~~~~r~als~~~~ld~~g~i~~~~~~~s~I~~~~ltY~~v~~~~~~~~~~l~~l~~~~~~l~~~R~~~gal~~~~~~ 240 (401)
T d2r7da2 161 GLGLHEVSPALSICLDLDPDGNAEAVDVLLTRVKVQRLAYQEAQARLEAGEEPFVTLARLARASRRLREGEGALSIDLPE 240 (401)
T ss_dssp STTSSSSEEEEEEEEEECTTSCEEEEEEEEEEECEEEEEHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHTTCCCCCCCC
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 24567566541147887267872332488878998301277899886314136788888999999999866884335654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~d~~~~~~~~~~~~~s~~lVeE~MilAN~~~A~~l~~~~~p~iyR~~~~p~~~~~~~~l~~~~~~~~~~~~a~ys~ 320 (401)
T d2r7da2 241 VRVKADETGASVFPLPKPEMRTVVQECMTLAGWGTAIFADDNEIPLPFATQDYPTREVAGDTLPAMWARRKTLARTRFQP 320 (401)
T ss_dssp EEEEEETTEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEECCCSSCCCCCSHHHHHHHHHHCCCEEEES
T ss_pred CEEEECCCCCCCCEEECCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCEEEECC
T ss_conf 20221367751002541312456676765301548999864368753103678824432110788887640044006758
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 321 ~~~~H~gLgl~~YthfTSPIRRY~DLivhrqL~a~L~~~~~~~~~~l~~~~~~~~~~~~~~~~~er~~~~~~~~~yl~~~ 400 (401)
T d2r7da2 321 SPGPHHGMGLDLYAQATSPMRRYLDLVVHQQLRAFLAGRDPLSSKVMAAHIAESQMNADATRQAERLSRRHHTLRFIAAQ 400 (401)
T ss_dssp SCCCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98867110678606269725405789999999999769999999999999999999999999999999999999999859
Q ss_pred E
Q ss_conf 8
Q 001511 467 K 467 (1064)
Q Consensus 467 ~ 467 (1064)
=
T Consensus 401 p 401 (401)
T d2r7da2 401 P 401 (401)
T ss_dssp T
T ss_pred C
T ss_conf 2
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=30180.70 Aligned_cols=1 Identities=0% Similarity=-0.726 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~dl~ss~~~~~~~~~~~~~~l~~e~~~~i~~~~~~~~~~~~~~~i~~~l~~~~~~~l~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 1 NDLPSSFTGYFKKFNTGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp CCHHHHHHHHHTTSCGGGCSSCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 96178899999877654004409899999998861777989999999997443677179998999997899999995888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~d~~l~~~l~~ 160 (400)
T d1tq4a_ 81 NEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISM 160 (400)
T ss_dssp TTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 67775678999887044553110689707998379854333449999987433226599996588887889999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~ 240 (400)
T d1tq4a_ 161 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 240 (400)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 69987999708632101354322011227889999999999999874899897797337764515899999999998399
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~l~~~~~~~i~~K~~~~~~~i~~~a~~a~~~~~iP~p~~~~~~d~~~l~~~l~~y~~~fGlD~~sL~~lA~~ 320 (400)
T d1tq4a_ 241 YKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTFLLDSDLETLKKSMKFYRTVFGVDETSLQRLARD 320 (400)
T ss_dssp GGHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHTCCBSSCTTSSCCCHHHHHHHHHHHHHHHHHTTCSHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999998516657999999899999999999999734246886303201329999999999999809998999999999
Q ss_pred -------------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~~~lka~iks~~~~~~~~~~~i~~~l~k~~~~~~~~~G~~~a~~~~f~~~~~l~~~~l~~~aedak~~l~~~~~~n 400 (400)
T d1tq4a_ 321 WEIEVDQVEAMIKSPAVFKPTDEETIQERLSRYIQEFCLANGYLLPKNSFLKEIFYLKYYFLDMVTEDAKTLLKEICLRN 400 (400)
T ss_dssp SSSCHHHHHHTCSHHHHTSSCCHHHHHHHHHHHHHHHHHHHCCSSSTTCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 29989999999708366555567899999999887883052389999999999999999999999999999999986559
|
| >d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate transeliminase domain: Pectate transeliminase species: Erwinia chrysanthemi [TaxId: 556]
Probab=100.00 E-value=0 Score=30179.98 Aligned_cols=1 Identities=0% Similarity=-0.128 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~YVs~~Gsd~~~Gs~~~p~~tIq~Ai~~a~~GDtI~v~~GtY~~~~~~~~~~~~~~~~~G~~~~ 80 (400)
T d1ru4a_ 1 ADCSSDLTSGISTKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGA 80 (400)
T ss_dssp CCCTTCTTTTCCCSCEEEECTTCCTTCCSSSTTSCBCHHHHHHHCCTTCEEEECSEEEECCCBTTBCCCEEECCCCBTTB
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCEEECCEEECCCEEEEEECCCCCCC
T ss_conf 97532000564447769997998679998722447889999983899599998695516651205753899723777897
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~i~i~~~~~~~~vi~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~n~~i~~~~~~g~~~~~~~ 160 (400)
T d1ru4a_ 81 PIYVAAANCGRAVFDFSFPDSQWVQASYGFYVTGDYWYFKGVEVTRAGYQGAYVIGSHNTFENTAFHHNRNTGLEINNGG 160 (400)
T ss_dssp CEEEEEGGGCCEEEECCCCTTCCCTTCCSEEECSSCEEEESEEEESCSSCSEEECSSSCEEESCEEESCSSCSEEECTTC
T ss_pred EEEEECCCCCEEEEECCCCCCCCCCCCCEEEEECCCEEEECCEEECCCCEEEEECCCCCCCCCCEEECCCCCEEEEECCC
T ss_conf 29996079972599587623343323431787447479944342067111222023421024526852775117885555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~G~~~~~~~~~~~i~nn~~~~n~~~~~~~~~~ 240 (400)
T d1ru4a_ 161 SYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAF 240 (400)
T ss_dssp CSCEEESCEEECCCCTTTTTSSCCSEEECTTCCSCCEEESCEEESCSSCSEECTTCCSCCEEESCEEESTTCCCSCCTTC
T ss_pred CCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEECCEEEECCCCCEEEEECCCCEEEECEEEECCCCCCCCCCCC
T ss_conf 42179974677134565442222024689612566166433566426766368824898799775998654101456430
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~n~~~~n~~~g~~~~~~~~~~~i~nN~~~~n~~~~~~~~~~~~~~~~~~~nN~~~~~~~ 320 (400)
T d1ru4a_ 241 AGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNGINYGFGSNVQSGQKHYFRNNVSLSASV 320 (400)
T ss_dssp CCCCCSEECCCTTCCCCCEEESCEEESCSSEEEECTTCSSCCEEESCEEESSSEEEEECSCCCTTCCEEEESCEEESSCE
T ss_pred CCCCCEEECCCCCCCCCEEEEEEEEECCCCCCEEECCCCCCCCEECCEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCE
T ss_conf 01373365047776665589877886366553040357664112265687255430343223567650798328834740
Q ss_pred -------------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~Spai~aG~~~~~~~~~G~~pDiGAyE~~ 400 (400)
T d1ru4a_ 321 TVSNADAKSNSWDTGPAASASDFVSLDTSLATVSRDNDGTLPETSLFRLSANSKLINAGTKESNISYSGSAPDLGAFERN 400 (400)
T ss_dssp EECSEEEESSTTTTSCCCCGGGBSBCCGGGGGCCCCTTCCCCCCSBTCBCTTCTTTTCSCCCTTCCCSTTSCCSSSCCCC
T ss_pred EEECCCCCCCEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 34134323522546730147761674643244656777767768884378998100487877788989986776777588
|
| >d3ovwa_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Fusarium oxysporum [TaxId: 5507]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: Glycosyl hydrolase family 7 catalytic core domain: Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) species: Fusarium oxysporum [TaxId: 5507]
Probab=100.00 E-value=0 Score=30178.38 Aligned_cols=1 Identities=0% Similarity=-1.490 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 q~~~~t~E~HP~ltwq~CT~~ggCt~~~g~vV~D~nwrw~h~~~g~~~c~~gn~w~~~lCpd~~tCa~nC~ldGad~~~y 80 (400)
T d3ovwa_ 1 ETPDKAKEQHPKLETYRCTKASGCKKQTNYIVADAGIHGIRQKNGAGCGDWGQKPNATACPDEASCAKNCILSGMDSNAY 80 (400)
T ss_dssp CEECSSCCCCCEEEEEEEETTTEEEEEEEEEEECHHHHCEECTTSCBSCCTTSCCCTTTCSSHHHHHHHCEECCCCHHHH
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCEECCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 98887676588523265058998586233499824733244058973234388565344887566676435237664555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~GVttsG~sLtl~~vt~~~~vGsRvYLl~~d~~~Yqmf~Llg~EfTFdVD~S~lpCGlNgALYfveM~adGg~s~~~~ 160 (400)
T d3ovwa_ 81 KNAGITTSGNKLRLQQLINNQLVSPRVYLLEENKKKYEMLHLTGTEFSFDVEMEKLPCGMNGALYLSEMPQDGGKSTSRN 160 (400)
T ss_dssp HHTTEEEETTEEEEESEETTEECCCEEEEECTTSSSBCEECCTTCEEEEEEECTTCCTTEEEEEEEECCCTTTTGGGCTT
T ss_pred CCEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCC
T ss_conf 40569953881899857548832621899757877357899338678888633568764322565662167778666788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 n~aGAkYGtGYCDAQC~d~kfInG~aNv~g~GsCC~EmDIwEANs~a~a~TpH~C~~~g~~~C~g~~Cg~~g~CD~~GC~ 240 (400)
T d3ovwa_ 161 SKAGAYYGAGYCDAQCYVTPFINGVGNIKGQGVCCNELDIWEANSRATHIAPHPCSKPGLYGCTGDECGSSGICDKAGCG 240 (400)
T ss_dssp CCCTGGGTCCCCBTTCCBCSEETTEECTTCCEEECCEEEEEEECSSCEEEEEECBSSCSCEEECGGGGSTTSSBCSSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 76666367722113156243205621346655555641101110455320688656787336457767888860888867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 fNpYR~g~~~FyG~G~~~tVDT~k~fTVVTQF~~~~~G~L~eIrR~YVQ~GkvI~n~~~~~~g~~~~~sit~~fC~~~~~ 320 (400)
T d3ovwa_ 241 WNHNRINVTDFYGRGKQYKVDSTRKFTVTSQFVANKQGDLIELHRHYIQDNKVIESAVVNISGPPKINFINDKYCAATGA 320 (400)
T ss_dssp BCGGGGTCTTSEESSTTSSEETTSCEEEEEEEEECTTSCEEEEEEEEEETTEEEECCCCCSSSSCSCSSBCHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEEEECCEEECCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 67433488754878987142379973899788708985368998999609999668875677887677346677546786
Q ss_pred -------------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~f~~~GGl~~mg~al~rGmVLv~SlWdd~~~~M~WLDsg~~GpC~~tsg~p~~ve~~~p~a~Vt~SNIKfG~I~STy~~ 400 (400)
T d3ovwa_ 321 NEYMRLGGTKQMGDAMSRGMVLAMSVWWSEGDFMAWLDQGVAGPCDATEGDPKNIVKVQPNPEVTFSNIRIGEIGSTSSV 400 (400)
T ss_dssp HHHHHTTHHHHHHHHHHHCEEEEEEEEECTTTTTHHHHBTTSCSBCSSTTSHHHHHHHCSSCEEEEEEEEEESTTCSCCC
T ss_pred CHHHHCCCHHHHHHHHCCCEEEEEEEEECCCCCCEECCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECEECCCCCCCCC
T ss_conf 42443476889888850886999986847999866204898878888888855651328997799860768577763119
|
| >d1inpa_ e.7.1.1 (A:) Inositol polyphosphate 1-phosphatase {Cow (Bos taurus), brain [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Carbohydrate phosphatase superfamily: Carbohydrate phosphatase family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like domain: Inositol polyphosphate 1-phosphatase species: Cow (Bos taurus), brain [TaxId: 9913]
Probab=100.00 E-value=0 Score=30177.39 Aligned_cols=1 Identities=0% Similarity=0.968 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~l~~~l~~aekAa~iar~~~~~~~l~~~~v~ek~~~~~~~k~~~D~VT~AD~~aq~~I~~~L~~~fP~~~~~IvGEE 80 (400)
T d1inpa_ 1 MSDILQELLRVSEKAANIARACRQQETLFQLLIEEKKEGEKNKKFAVDFKTLADVLVQEVIKENMENKFPGLGKKIFGEE 80 (400)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHSHHHHTCCCCSCCCCTTTTCCCCHHHHHHHHHHHHHHHHHHHHHSTTGGGGEEESS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCC
T ss_conf 96899999999999999999998501687767643136534626799984189999999999999987869999988158
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~IDPIDGT~~ 160 (400)
T d1inpa_ 81 SNELTNDLGEKIIMRLGPTEEETVALLSKVLNGNKLASEALAKVVHQDVFFSDPALDSVEINIPQDILGIWVDPIDSTYQ 160 (400)
T ss_dssp CSEEECTTSCEEECCCCSSCSCHHHHHHHHTTTCTTHHHHHHHHHTCCCCCCCSSSSSCCCCCCGGGEEEEEEEEECHHH
T ss_pred CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEECCCCCHH
T ss_conf 88654544311122024136666666543114542023342023231100011001232356787656299952758420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 Fi~G~~~~~v~iaL~~~~~~~v~vlI~lal~~~G~Pv~GvI~~P~~~~~~~~~~~~G~~~~a~~g~Ga~~~~~~~~~~~~ 240 (400)
T d1inpa_ 161 YIKGSADITPNQGIFPSGLQCVTVLIGVYDIQTGVPLMGVINQPFVSQDLHTRRWKGQCYWGLSYLGTNIHSLLPPVSTR 240 (400)
T ss_dssp HHHCCCCCCCBTTBCSSSGGGCEEEEEEEETTTCCEEEEEEEEEEEEECTTTCCEEEEEEEEEESSSEEECCSCCTTSST
T ss_pred HCCCCCCCEEEEEHHCCCCCCCEEEEEEHHEECCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 12699643255500126665313565201007897898475455446400023678428997437673236766665544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~g~a~~k~~~VA~G~~D~yl~~~~~~~~WD~aA 320 (400)
T d1inpa_ 241 SNSEAQSQGTQNPSSEGSCRFSVVISTSEKETIKGALSHVCGERIFRAAGAGYKSLCVILGLADIYIFSEDTTFKWDSCA 320 (400)
T ss_dssp TTSSCSSCCCCBTTBTTSSSSCCEEEECTTCCSCCCCTTTTCCEEEECCCHHHHHHHHHHTSCSEEEECSSCCBHHHHHH
T ss_pred CCCCCCCEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH
T ss_conf 44322201025675333454047850345389999999747954997558899999996899888995578998788799
Q ss_pred -------------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 g~~Il~eaGG~VtD~~G~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~N~~giIA~~~~~~h~~~l~~l~~~l~~~~~~~ 400 (400)
T d1inpa_ 321 AHAILRAMGGGMVDLKECLERNPDTGLDLPQLVYHVGNEGAAGVDQWANKGGLIAYRSEKQLETFLSRLLQHLAPVATHT 400 (400)
T ss_dssp HHHHHHTTTCEEEEHHHHHHSCTTSSCSTTBCCSSCCSTTTTTTCTTBCTTCEEEESCHHHHHHHTCCCTTTCCCCSCCC
T ss_pred HHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999978997987999962466544445210014443223553101556878997888999999999997633546789
|
| >d2olua2 e.3.1.1 (A:293-692) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: Penicillin-binding protein 2, PBP2 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=30173.81 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~y~~~~d~v~~~l~~~~~~~~~~~~~~~~~G~~I~TTlD~~lQ~~ae~~l~~~~~~~~~~~~~a~vvvd~~TG~I 80 (400)
T d2olua2 1 TNQDSEYNSYVNFVKSELMNNKAFKDENLGNVLQSGIKIYTNMDKDVQKTLQNDVDNGSFYKNKDQQVGATILDSKTGGL 80 (400)
T ss_dssp CCCSGGGHHHHHHHHHHHTTSTTTTTSCHHHHTTBCCEEEECCCHHHHHHHHHHHHHCSCCSSTTEEEEEEEEETTTCBE
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCE
T ss_conf 99877557999999999986128766567786679988995889999999999998534214867528999998899959
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 lAm~~~~~y~~~~~~n~~~~~~~pGStfKp~v~~aaale~g~~~~~~~~~~~~~~~~~~~~~~n~~~~~~G~v~l~~Al~ 160 (400)
T d2olua2 81 VAISGGRDFKDVVNRNQATDPHPTGSSLKPFLAYGPAIENMKWATNHAIQDESSYQVDGSTFRNYDTKSHGTVSIYDALR 160 (400)
T ss_dssp EEEECSTTCCTTTSCCTTTSCEECGGGGHHHHTHHHHHHHTCCCTTBEEECCSSEEETTEEECCTTSCCCCEEEHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99997888883233321000003666556178899986458721110013334421111013366655553334322355
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~S~N~~~v~l~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~lg~g~~~vtplqlA~aya~iANgG~~~~P~~v~~i~~ 240 (400)
T d2olua2 161 QSFNIPALKAWQSVKQNAGNDAPKKFAAKLGLNYEGDIGPSEVLGGSASEFSPTQLASAFAAIANGGTYNNAHSIQKVVT 240 (400)
T ss_dssp TTCHHHHHHHHHHHHHHTCTTHHHHHHHHTTCCCSSCCCHHHHTTCTTCEECHHHHHHHHHHHHTTSEEECCBCEEEEEC
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEECCCEEEEEEECCCCCC
T ss_conf 66511123200010024567889999987088731121100000123456778886400100005964787674011356
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~g~~v~~~~~~~~v~s~~~a~~l~~~l~~vv~~~Gt~~~~~~~g~~vagKTGTa~~~~~~~~~~~~~~~~~~daWFvG~ 320 (400)
T d2olua2 241 RDGETIEYDHTSHKAMSDYTAYMLAEMLKGTFKPYGSAYGHGVSGVNMGAKTGTGTYGAETYSQYNLPDNAAKDVWINGF 320 (400)
T ss_dssp TTSCEEECCCCEEECSCHHHHHHHHHHHHGGGSTTSTTTTCCCSSCCCEEEEEEECCCHHHHHHTTCCTTEESEEEEEEE
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 43232222222222113789999976521433541000111357814777611144576576544566687640799983
Q ss_pred -------------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~P~~~~~VwvG~d~~~~~~~~~~~~~~~~~~~a~i~~~~m~~~~~~~~~~f~~P~~v~~~~p~~~~~~~~~~~~~~~~~~ 400 (400)
T d2olua2 321 TPQYTMSVWMGFSKVKQYGENSFVGHSQQEYPQFLYENVMSKISSRDGEDFKRPSSVSGSIPSINVSGSQDNNTTNRSTH 400 (400)
T ss_dssp CSSEEEEEEEEESSCCGGGTTSEESHHHHTHHHHHHHHHHHHHSCCSCCCCCCCTTEESCTTCCEETTCCCSSBCCCCCC
T ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 69969999984688875676765676433579999999999975689666999998766777554789999998888889
|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Probab=100.00 E-value=0 Score=30174.62 Aligned_cols=1 Identities=0% Similarity=0.536 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
|
T Consensus 1 ~~~~~~~~~~~~viYe~~v~~f~~~Gd~~gi~~~ldyi~~LGv~~i~l~Pv~~~~~~~~~GY~~~d~~~vd~~~Gt~~dl 80 (400)
T d1eh9a3 1 FNNETFLKKEDLIIYEIHVGTFTPEGTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGF 80 (400)
T ss_dssp CCSCCSCCSSSCCEEEECTTTSSSSCSHHHHHHTHHHHHHHTCCEEEECCCBCCSSSCCCSTTCCCTTCBCSTTCCHHHH
T ss_pred CCCCCCCCCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 99877688768599998312307899999999875899975998899687676889999997877778858221999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 k~lv~~~h~~gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~v~~~l~d~~~~Wl~~~gvDGfR 160 (400)
T d1eh9a3 81 RKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFR 160 (400)
T ss_dssp HHHHHHHHHTTCEEEEEECCSCCCSSSCCHHHHSCCSCSSCCCSSSCCCCSSSTTHHHHHHHHHHHHHHHHHHSCCCCEE
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99999997637713542244642577850443100211234545564435565556079999999999887524663688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~Daa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (400)
T d1eh9a3 161 LDAVHAIIDTSPKHILEEIADVVHKYNRIVIAESDLNDPRVVNPKEKCGYNIDAQWVDDFHHSIHAYLTGERQGYYTDFG 240 (400)
T ss_dssp ETTGGGCCCCSSSCHHHHHHHHHHHTTCCEEECCCSCCTTTTSCGGGTCCCCSEEECHHHHHHHHHHHSCCCSGGGGGCC
T ss_pred EECHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCEECCCCCCCCCHHHHHHHCCCCCCHHHHHH
T ss_conf 60434415114565589999987533222110100468442564553352000212665310467665033210145444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~a~a~~l~~pGi 320 (400)
T d1eh9a3 241 NLDDIVKSYKDVFVYDGKYSNFRRKTHGEPVGELDGCNFVVYIQNHDQVGNRGKGERIIKLVDRESYKIAAALYLLSPYI 320 (400)
T ss_dssp SHHHHHHHHHSSCSCSSEEETTTTEEECCCCCSCCGGGEECCSCCHHHHHTTTTCCCGGGGSCHHHHHHHHHHHHSSSSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 35789987543211221478999874465233304400443122046553356401267776656778999999848997
Q ss_pred -------------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 P~iy~G~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~lRk~~pv~ 400 (400)
T d1eh9a3 321 PMIFMGEEYGEENPFYFFSDFSDSKLIQGVREGRKKENGQDTDPQDESTFNASKLSWKIDEEIFSFYKILIKMRKELSIA 400 (400)
T ss_dssp CEEESSGGGTCCCCCCCCCCCCSTTHHHHHHHHHHHHTCCCSCTTSHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHTCS
T ss_pred CEEECCHHHCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 78977853288898875010266877666676405766789876552346556677657899999999999999678699
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=100.00 E-value=0 Score=30103.55 Aligned_cols=1 Identities=100% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~p~~~~~~~LFsP~~Ig~~~lkNRiv~apm~~~~a~~~G~~~~~d~~i~yy~~rA~GG~GlIi~e~~~V~~~g~ 80 (399)
T d1oyaa_ 1 SFVKDFKPQALGDTNLFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAG 80 (399)
T ss_dssp CBCTTCCCCCCTTSGGGSCEEETTEEESSSEEBCCCCCCCCBTTTTBCCTTTHHHHHHHHTCSTTCEEEEEEEESSGGGC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCEEECCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCEEECCCCC
T ss_conf 97455888889999999973289988637668777667757899897987999999999972890799964377776547
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~l~~d~~i~~~k~l~~~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~~p~~ 160 (399)
T d1oyaa_ 81 GYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQHS 160 (399)
T ss_dssp CCTTSCBSSSHHHHHHHHHHHHHHHHTTCEEEEEEECCGGGSCHHHHHHTTCCEEESCSSCCSCHHHHHHHHHTTCCEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 78998745787998888699999975201221233220234574211334445667543566777777666567887520
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 mt~~eI~~ii~~f~~AA~rA~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeYGGSlENR~Rf~~Eii~aIR~~vg~~~I 240 (399)
T d1oyaa_ 161 LTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKV 240 (399)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCC
T ss_conf 15677888888999999999980975676124377789986413035665224765665457799998754340222574
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 gvRls~~d~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~PV 320 (399)
T d1oyaa_ 241 GLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWKGPV 320 (399)
T ss_dssp EEEECTTCCTTTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSCTTSCTTSSCCCSCCTTHHHHHCCSCE
T ss_pred EEEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE
T ss_conf 47853022025667741000577899999889874324543441122146677755454432111268999999829988
Q ss_pred ------------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 i~~G~i~~~~~~~~~i~~~~aDlV~~gR~liaDP~l~~K~~~G~~ln~~d~~~~~~~~~~gyt~~p~~~~~~~~~~~~~ 399 (399)
T d1oyaa_ 321 IRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMSAHGYIDYPTYEEALKLGWDKK 399 (399)
T ss_dssp EEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHHHHTCCCBCCCGGGSSCSSSTTTTCCCCHHHHHHTTSSCC
T ss_pred EEECCCCCHHHHHHHHHCCCCEEHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 9978989869999999759981848879999791299999729998999653267899988084845499997489999
|
| >d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase {Fungus (Fusarium oxysporum) [TaxId: 5507]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome P450-NOR, nitric reductase species: Fungus (Fusarium oxysporum) [TaxId: 5507]
Probab=100.00 E-value=0 Score=30099.88 Aligned_cols=1 Identities=0% Similarity=-1.490 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~p~~~~~~~dP~~~~~~Lr~~gPv~~~~~~~g~~~~vvt~~~dv~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (399)
T d1jfba_ 1 APSFPFSRASGPEPPAEFAKLRATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSASGKQAAKAKP 80 (399)
T ss_dssp CCBSSCCCSSTTSCCTHHHHHHHHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99899898766596899999996399688763789569997699999999769763547654567654544211012477
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~l~~~dg~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 160 (399)
T d1jfba_ 81 TFVDMDPPEHMHQRSMVEPTFTPEAVKNLQPYIQRTVDDLLEQMKQKGCANGPVDLVKEFALPVPSYIIYTLLGVPFNDL 160 (399)
T ss_dssp CGGGCCTTHHHHHHTTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCEEHHHHTTTHHHHHHHHHHHTCCGGGH
T ss_pred CHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 32226869999987400764566532111026789899887454321244431024566655667788887651000036
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~d~~~~~~~~~~~~~~~~~~ei~~~~~~~~~ag~~tt 240 (399)
T d1jfba_ 161 EYLTQQNAIRTNGSSTAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAFLLLVAGNATM 240 (399)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHTTTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHH
T ss_conf 78888766531000027899999999999999999998630245544322222223577762112212334322002015
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~l~~~~~~L~~~pe~~~~L~~e~~~~~~~~~e~lr~~~~~~~~~~R~~~~~~~~~g~~ip~G~~V~~~~~~~~~dp~~ 320 (399)
T d1jfba_ 241 VNMIALGVATLAQHPDQLAQLKANPSLAPQFVEELCRYHTASALAIKRTAKEDVMIGDKLVRANEGIIASNQSANRDEEV 320 (399)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHCGGGHHHHHHHHHHHSCSCCSCCEEEESSCEEETTEEECTTCEEEECHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHH
T ss_conf 66999999998456589999741345321101101232223433333222013334577676653211114451578422
Q ss_pred ------------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------------------~ 467 (1064)
=
T Consensus 321 ~~dP~~F~PeR~~~~~~~lpFG~G~r~C~G~~lA~~el~~~l~~Ll~rfp~~~l~~~~~~~~~~~~~~~~g~~~lpv~~ 399 (399)
T d1jfba_ 321 FENPDEFNMNRKWPPQDPLGFGFGDHRCIAEHLAKAELTTVFSTLYQKFPDLKVAVPLGKINYTPLNRDVGIVDLPVIF 399 (399)
T ss_dssp SSSTTSCCTTCCCCSSCCCTTCCGGGSCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCEECCTTSCSCEEECEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCCCCCEEEC
T ss_conf 7996445868889999886889997368069999999999999999967967899887776467787777871351039
|
| >d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp158a2 species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=0 Score=30099.85 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~p~~~~~~~~~~~~~~~~p~~~~lr~~gPv~~~~~~~g~~~~wvvt~~e~v~~vl~d~~~~~~~~~~~~~~~~~~~~~ 80 (399)
T d1s1fa_ 1 QAVPPVRDWPAVDLPGSDFDPVLTELMREGPVTRISLPNGEGWAWLVTRHDDVRLVTNDPRFGREAVMDRQVTRLAPHFI 80 (399)
T ss_dssp CCSCCEEECCCCCCCTTCCCHHHHHHHHHCSEEEEECSBSBSCEEEECSHHHHHHHHTCTTEESTTTTTTTBCBSSSSCS
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99899899887789999989999999971996898416886588996599999999769764456555555444561001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~Dg~~H~~~Rr~l~~~Fs~~~l~~~~~~i~~~~~~l~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~~~~~ 160 (399)
T d1s1fa_ 81 PARGAVGFLDPPDHTRLRRSVAAAFTARGVERVRERSRGMLDELVDAMLRAGPPADLTEAVLSPFPIAVICELMGVPATD 160 (399)
T ss_dssp SCTTSGGGCCTTHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHCSSEEHHHHTTTHHHHHHHHHHHTCCGGG
T ss_pred CCCCCHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHEEHHCCCCCHHH
T ss_conf 33452010586778999987484347412678999999999998620234565032024554433430001104883455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~tT~ 240 (399)
T d1s1fa_ 161 RHSMHTWTQLILSSSHGAEVSERAKNEMNAYFSDLIGLRSDSAGEDVTSLLGAAVGRDEITLSEAVGLAVLLQIGGEAVT 240 (399)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHTHHHHHHHHHHHTSCCSCCCSHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 44566677887512232046788888899999999987630223201232001256655507777777888751342222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~l~~~l~~l~~~p~~~~~~~~~~~~~~~~~~e~~r~~p~~~~~~~~R~~~~~~~l~G~~ip~Gt~V~~~~~~~~rdp~~ 320 (399)
T d1s1fa_ 241 NNSGQMFHLLLSRPELAERLRSEPEIRPRAIDELLRWIPHRNAVGLSRIALEDVEIKGVRIRAGDAVYVSYLAANRDPEV 320 (399)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHCGGGHHHHHHHHHHHSCCBSSCCCCEEESSCEEETTEEECTTCEEEECHHHHTTCTTT
T ss_pred CCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEECCCCEECCCCCCCCCCHHH
T ss_conf 20222122343085155431232013532122211246632223432100002540533533897501233334668110
Q ss_pred ------------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~dP~~F~PeR~~~~~lpFG~G~r~C~G~~lA~~e~~~~l~~Ll~rf~~~~~~~~~~~~~~~~~~~~rg~~~lpv~~~~ 399 (399)
T d1s1fa_ 321 FPDPDRIDFERSPNPHVSFGFGPHYCPGGMLARLESELLVDAVLDRVPGLKLAVAPEDVPFKKGALIRGPEALPVTWHA 399 (399)
T ss_dssp SSSTTSCCTTC--CCCCTTCCSTTCCTTHHHHHHHHHHHHHHHHHHSTTCEESSCGGGSCBCSSCSBCCBSCCEEECCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEECCCCCCCCEEEEEEEEC
T ss_conf 6995444889999997777988617815999999999999999997798788889666525168744287047899849
|
| >d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=30099.56 Aligned_cols=1 Identities=0% Similarity=-0.128 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~G~As~~~gttGG~~a~~~~v~~v~t~~el~~~l~~~~~~~P~vI~~~gti~~~~~~~~~~~~~~~~~~ 80 (399)
T d1bn8a_ 1 ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKD 80 (399)
T ss_dssp CCGGGCCCCTTSSGGGSTTCCCTTTTCCGGGEEEECSHHHHHHHHCCTTCCSCEEEEECSEEESSBCTTCCBCCHHHHCC
T ss_pred CCCHHHCCCCCCCEEECCCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCC
T ss_conf 95211113688750504898677887787746830889999999862369986699986679425665654444454334
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~SNkTIiG~G~~~~i~g~gl~i~a~NVIirnl~i~ 160 (399)
T d1bn8a_ 81 PEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQ 160 (399)
T ss_dssp TTCCHHHHHHHTCHHHHCSSCCCSHHHHHHHHHHHHHHHHHEEEECSSEEEEECTTCCEEESCEEEECSEEEEEESCEEE
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCEEECCEEEEECCEEEEECEEEE
T ss_conf 33353322234574342034666654322111021435522785279864984589708954579983746999592997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~s~~VWIDH~t~s~~~~e~~~~~~~~~~~~~~~Dg~lDi~~gs~~VTvS~n 240 (399)
T d1bn8a_ 161 DAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYN 240 (399)
T ss_dssp CCCCSSCEEETTSSSSCEEECCCCSEEEESCEEEEEESCEEECTTCCGGGCCEETTEECCCCCCSEEEETTCEEEEEESC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEECC
T ss_conf 17466666655666556767778658986686589988660267754444544456653333451653146404995774
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~f~~h~k~~L~G~~d~~~~d~g~~~vT~hhN~f~~~~~R~Prvr~g~vHv~NNy~~n~~~~~~~~~~ya~~~~~~a~il~ 320 (399)
T d1bn8a_ 241 YYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYA 320 (399)
T ss_dssp EEEEEEECCEECCCTTCGGGTTCCCEEEESCEEEEEEECSSEESSCEEEEESCEEECCTTCSSSCCCCSEEECTTCEEEE
T ss_pred CCCCCCCEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCEEECCCCCCEEEE
T ss_conf 15687524675678876434687359999327247645686303557888851767787655410002212456746999
Q ss_pred ------------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 EgN~F~~~~~~~~~~~~~~~~g~~~~~~gn~~~g~~~~~~~~~~~~~~~~~~p~y~y~~~~A~~v~~~V~a~AGAGkl~ 399 (399)
T d1bn8a_ 321 QNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN 399 (399)
T ss_dssp ESCEEECTTCCSGGGEEECTTCCBCEEESCEETTEECCHHHHTTCBSCCSCCCCSCCCCCCHHHHHHHHHHHCSTTSCC
T ss_pred EEEEEECCCCCCCCEECCCCCCCEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 8148878888655230102688459607847648453676676746565323456533479999998765258976159
|
| >d2ah2a2 b.68.1.1 (A:1-399) Trypanosoma sialidase {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Trypanosoma sialidase species: Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]
Probab=100.00 E-value=0 Score=30099.07 Aligned_cols=1 Identities=100% Similarity=1.201 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~syRIPsLv~~~GtlLA~ae~R~~~~~D~~~idiv~rRS~D~GkTWs~~ 80 (399)
T d2ah2a2 1 LAPGSSRVELFKRQSSKVPFEKDGKVTERVVHSFRLPALVNVDGVMVAIADARYETSFDNSLIDTVAKYSVDDGETWETQ 80 (399)
T ss_dssp CCTTCEEEEEECTTTCEEEEEETTEEEEEECSEEEEEEEEEETTEEEEEEEEESSCSCSSSCEEEEEEEESSTTSSCEEE
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECEEEEEECCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCE
T ss_conf 98886434203788765775568988985699991308999899999999179888998720378998532788578762
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~v~~~~~~~~~~~~dP~~v~d~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~g~tWs~p~~i~ 160 (399)
T d2ah2a2 81 IAIKNSRASSVSRVVDPTVIVKGNKLYVLVGSYNSSRSYWTSHGDARDWDILLAVGEVTKSTAGGKITASIKWGSPVSLK 160 (399)
T ss_dssp EEECCCCSSTTCEEEEEEEEEETTEEEEEEEEESSCCSCGGGCSSSTTEEEEEEEEEEEEECGGGSCEEEEEECCCEECG
T ss_pred EEEECCCCCCCCCCCCCEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 89724777776666688599849969999997658886221125788876258977998646798366773258832056
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~gi~~~~GrLv~p~~~~~~~~~~~s~~iySdD~G~TW~~g~~~~~~~~~~~~v~~~dG~l 240 (399)
T d2ah2a2 161 EFFPAEMEGMHTNQFLGGAGVAIVASNGNLVYPVQVTNKKKQVFSKIFYSEDEGKTWKFGKGRSAFGCSEPVALEWEGKL 240 (399)
T ss_dssp GGSCSEETTEEEEEEEECSEECEECTTSCEEEEEEEEETTCCEEEEEEEESSTTSSCEECSCCCCTTCEEEEEEEETTEE
T ss_pred CCCCCCCCCCCCCEECCCCCCEEEECCCCEECCEEEECCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCCCEECCCCEE
T ss_conf 53465335753100526775303304863731337534887468899995899851683465589875566300358818
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ll~~R~~~g~r~v~~S~DgG~TW~~~~~~~~~v~~~~~~~~~~~~~~~li~~~~~~~~~lLfsnp~~~~~~~~r~~l~l~ 320 (399)
T d2ah2a2 241 IINTRVDYRRRLVYESSDMGNTWLEAVGTLSRVWGPSPKSNQPGSQSSFTAVTIEGMRVMLFTHPLNFKGRWLRDRLNLW 320 (399)
T ss_dssp EEEEECTTSCCCEEEESSTTSSCEECTTTTTTCBCSSTTSCSCCCCCCEEEEEETTEEEEEEEEECCSSCTTCCBCEEEE
T ss_pred EEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEE
T ss_conf 99876278740699974898625433454433437776667874453135741389729999798886454435642899
Q ss_pred ------------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~Sdd~g~~w~~~~~i~~g~saYS~L~~~dg~ig~lYE~~~~~~~~i~f~rlT~el~~ik~v~~~w~~~d~~~~~~~~~~ 399 (399)
T d2ah2a2 321 LTDNQRIYNVGQVSIGDENSAYSSVLYKDDKLYCLHEINSNEVYSLVFARLVGELRIIKSVLQSWKNWDSHLSSICTPA 399 (399)
T ss_dssp EESSSCEEEEEECSCTTCBCCCEEEEEETTEEEEEEEEEETTEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred EECCCCCCCCCCEEECCCCCCCCEEEEECCEEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8579984214722855898542576758998999998589970059983687899999999998987547874478899
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=100.00 E-value=0 Score=30029.89 Aligned_cols=1 Identities=0% Similarity=0.237 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 m~~~~~~~~~~T~avH~G~~~~~~~~~~av~~PI~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~LE~~la~LE 80 (398)
T d1qgna_ 1 MKYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALE 80 (398)
T ss_dssp -CCCTTCCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEECCCCEEECCHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHH
T ss_conf 98534579976579968976898888899618830777578089899998743776796443998868999999999982
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 gg~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~t~~v~~E 160 (398)
T d1qgna_ 81 GAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTE 160 (398)
T ss_dssp TCSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECC
T ss_conf 99348896486468888876303455432322221011333210343456643222442210233432103563179705
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 spsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~ 240 (398)
T d1qgna_ 161 SPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL 240 (398)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCEEEECCEEECCCCCCCHHHCCCEEEEECHHHCCCCCCEEEHHHCCHHHHHHHHHHH
T ss_conf 74300024321799999886449879961502144557722317989998100015765311100100013343221111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~G~~l~p~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~ 320 (398)
T d1qgna_ 241 HHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD 320 (398)
T ss_dssp HHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES
T ss_pred CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHCCCCCCEEEEEEC
T ss_conf 03677748979999998333477889999889999999999739882005788888993365554325898720466643
Q ss_pred -----------------------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------------------8
Q 001511 467 -----------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 g~~~~a~~f~~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGlEd~eDLi~Dl~~AL~~i 398 (398)
T d1qgna_ 321 GDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI 398 (398)
T ss_dssp SCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSSCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHCCCCCEEEECCCCCCCEEECCCHHCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 999999999972885626268788761121750113100899999965989297999761089999999999998429
|
| >d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=30031.22 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~kltl~d~~l~~k~Vl~R~D~NvPi~~g~i~d~~RI~~~~pTI~~l~~~~akvil~SH~GRP~g~~~~~~Sl~~~~~~L~ 80 (398)
T d1vpea_ 1 EKMTIRDVDLKGKRVIMRVDFNVPVKDGVVQDDTRIRAALPTIKYALEQGAKVILLSHLGRPKGEPSPEFSLAPVAKRLS 80 (398)
T ss_dssp CBCBGGGSCCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 98762004847998999931477533995887289999999999999789989998378999998887668799999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~l~~~v~f~~d~~~~~~~~~~~~l~~g~i~lLEN~Rf~~~E~~n~~~f~k~La~l~DiyVnDAFg~sHR~haS~~gi~~ 160 (398)
T d1vpea_ 81 ELLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPGETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQ 160 (398)
T ss_dssp HHHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSTHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGGGG
T ss_pred HHHCCEEEEEECCCCHHHHHHHHCCCCCCEEEEHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCCCEECHHH
T ss_conf 63164079850368658899861578876897244442432333247799998605560342543566515875011345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~lps~aG~l~ekEi~~L~k~l~~~~~P~~aIlGGaKisdKi~~i~~L~~k~D~iiigG~~antfL~a~G~~iG~sl~e~~ 240 (398)
T d1vpea_ 161 FIPSVAGFLMEKEIKFLSKVTYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEED 240 (398)
T ss_dssp TSCEEECHHHHHHHHHHHHHHHCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGG
T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 46101147778789876422101467517996157635079999988875022232423789999974997788753412
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~i~~~a~~~~~~i~lP~d~~v~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGP~G 320 (398)
T d1vpea_ 241 KIDLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMG 320 (398)
T ss_dssp GHHHHHHHHHHHHHTTCEEECCSEEEEESSCSTTCCCEEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHEEECCCCCCCCCCEEECCCCCCCCCCEEECCCCCHHHHHHHHHCCCCEEEEECCCC
T ss_conf 56789999987665288511001012110003566520213124798765321366500899998745576799974612
Q ss_pred -----------------------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------------------8
Q 001511 467 -----------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~fE~~~F~~GT~~l~~~ia~~t~~~~~sIiGGGdT~aai~~~g~~~~f~hvSTGGGA~Le~L~G~~LPgi~aL~~~~a 398 (398)
T d1vpea_ 321 VFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASMRIKKA 398 (398)
T ss_dssp CTTSGGGCHHHHHHHHHHHHHHHTTCEEEEESHHHHHHHHHTTCGGGSSEEESCHHHHHHHHTSSCCHHHHTSCBCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCCHHHHHHHHCCC
T ss_conf 011662417999999999987238998999178999999972986796089677899999987999718999863549
|
| >d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: NADH-dependent butanol dehydrogenase A (TM0820) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=30026.21 Aligned_cols=1 Identities=100% Similarity=0.437 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~M~~f~f~~p~~i~~G~g~~~~l~~~l~~~g~~rvliVt~~~~~~~~g~~~~l~~~L~~~gi~~~~f~~v~~~pt~~~ 80 (398)
T d1vlja_ 1 HHHMENFVFHNPTKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSK 80 (398)
T ss_dssp CCCCCCEEECCCCEEEESTTCGGGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHH
T ss_pred CCCCCCEEEECCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHH
T ss_conf 99888728758986998549999999999965998489998974787731999999999865991999867159989899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 v~~~~~~~~~~~~D~IIavGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~iPTt~gtgse~t~~avi~~~~ 160 (398)
T d1vlja_ 81 VHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISATGTEMNGNAVITNEK 160 (398)
T ss_dssp HHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCSSCGGGSSEEEEEETT
T ss_pred HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEEECCCCCCEECCCCCEEEECC
T ss_conf 99876411456676688448863112788889886414556776436644367787335414654432113552132001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~K~~~~~~~~~p~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s~~~~~~s~~~a~~~~~~~~~~l~~~~~~~~~ 240 (398)
T d1vlja_ 161 TKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHILEYYFDGSSPEISNEIAEGTIRTIMKMTERLIEKPDD 240 (398)
T ss_dssp TTEEEEEECGGGSCSEEEECGGGGGGSCHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCEEEECCCCCEEEEEEHHHCCCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 25420232012443169985564077740001131266998866531021256434577899988740233664038987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~ar~~l~~a~~~a~~~~~~~~~~~~~g~~H~l~h~l~~~~~v~HG~~~ai~lp~v~~~~~~~~~~~~~~la~~l~~~~~ 320 (398)
T d1vlja_ 241 YEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALYDIAHGAGLAIVFPAWMKYVYRKNPAQFERFAKKIFGFEG 320 (398)
T ss_dssp HHHHHHHHHHHHHHTSSTTTTTSCSCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHGGGSHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCC
T ss_conf 99987667789988888876530576402111112113455877022024016789999987574689999999738899
Q ss_pred -----------------------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------------------8
Q 001511 467 -----------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~e~~~~~~~~l~~~~~~lglP~~L~elGi~~~~i~~ia~~a~~~~~~~~npr~~~~~~~~~l~~e~i~~Il~~A~~ 398 (398)
T d1vlja_ 321 EGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVDNVMLLVEKNLKPKGASLGRIMVLEREDVREILKLAAK 398 (398)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCCSTGGGTCCGGGHHHHHHHHHHHHHHTTGGGTCCSCSSSCCCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 819999999999999999859999989939999999999999996766427987676213334899999999999659
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=100.00 E-value=0 Score=29953.42 Aligned_cols=1 Identities=0% Similarity=-1.789 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~d~k~~~f~T~~ih~G~~~~~~~g~v~pPI~~sST~~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEgg~~ 80 (397)
T d1y4ia1 1 SDCRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEA 80 (397)
T ss_dssp CCGGGSCHHHHHHHTTCCCCTTTCCSSCCCCCCSCCCCSSHHHHHHHHHSCSSSSCCCTTSCHHHHHHHHHHHHHHTCSE
T ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99888981100376798888789992188028888650888999876347768966658988789999999999849962
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~d~~~~~~~i~~~Tklv~~Esp~NP 160 (397)
T d1y4ia1 81 GLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAMRPETKVVYIETPANP 160 (397)
T ss_dssp EEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTT
T ss_pred CEEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHCCCCCCCEEEECCCCCCHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 11106778888887763168998654301012331035431367785575414899989999865877738980487522
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~ 240 (397)
T d1y4ia1 161 TLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDI 240 (397)
T ss_dssp TCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHT
T ss_pred CEEECCCHHHHHHHHCCCCEEEECCCCCCCCCCCCHHCCCCEEEEEHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 11003307899886047852870275227154763202897899851351078741465215787889999999999967
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~G~~l~p~~a~l~~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~ 320 (397)
T d1y4ia1 241 TGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGL 320 (397)
T ss_dssp TCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHH
T ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCH
T ss_conf 49858989999997471769999999999999999999748996767488878996522223446778759999956999
Q ss_pred ----------------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGlEd~~DLi~Dl~~AL~~a~~ 397 (397)
T d1y4ia1 321 EAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKATF 397 (397)
T ss_dssp HHHHHHHHTCSSSEECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCCCEEECCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 99999997289362305637432032276312654589999997598929799976119999999999999987219
|
| >d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Myo-inositol 1-phosphate synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=0 Score=29952.25 Aligned_cols=1 Identities=100% Similarity=0.371 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~v~s~~v~y~~~~i~~~y~y~~t~v~~~~~~~~v~p~~~~~~f~t~~~vpklGVmLVG~GGnngTT~~aGv~Anr~g 80 (397)
T d1vkoa1 1 KRLIVESPNVKLEDGVLESRFTYRKNHFEHRADGLHVTPKEHDYSFKTVLKPRKTGLLLVGLGGNNGSTAVGSIFANQYA 80 (397)
T ss_dssp CCCCCCCTTEEEETTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECSCCCEEEEEETTTSHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCEEECCCEEEEEEEECCEEEEEECCCEEEEEEEEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 94488399738737558999886104999817935998767778998416688258998438840888999999998758
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 L~w~tk~G~~~an~~GSltq~stirlG~~~~~~~~~~~P~kd~lPl~~p~DiVfGGWDI~~~nL~eAa~rA~VLd~~ll~ 160 (397)
T d1vkoa1 81 MTWRTKEGHSQANYFGSVTQTATVHLGYDSATQNQIFVPFKDIVPILSPNDLIISGWDISDSNLYEAMGRAKVFEPELQE 160 (397)
T ss_dssp CEEEETTEEEECCCTTCHHHHCEEEEEEETTTTEEEEEEGGGTSCCCCGGGEEEEEECSSCCCTTHHHHHHTCSCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHCEEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCHHHHH
T ss_conf 97546677405886351443033575135789873356376517889821168944469999889999875999989999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~l~~~L~~i~P~psv~~pdfia~nq~~ra~nv~~g~~k~e~ve~Ir~DIr~Fk~~~~ldrVVVlwtAsTEr~~~~~~~v~ 240 (397)
T d1vkoa1 161 KLRPFMEPIVPLPSIYYPDFIASNQGDRANNVIPGDNKLEHLEHIRADIRKFKQEHELECVIVLWTANTERYTDVRQGLN 240 (397)
T ss_dssp HHHHHHTTCCCBCBCCCGGGSCGGGGGGCCSBCCSSCHHHHHHHHHHHHHHHHHHHTCSEEEEEECSCCCCCCCCCTTTT
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 99999860865542107277775135200151358889999999999999999974997699998158777777761200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~t~e~l~~ai~~n~~eIsPS~lYA~AAi~eG~pyiNgsPq~t~vPal~eLA~~~~v~iaG~DfKTLLaspliLDl~ll~e 320 (397)
T d1vkoa1 241 ATADEIMESIRVNEDEVSPSNIFAVASILEGAHYINGSPQNTLVPGLIELAERHKVFVGGDDFKSLLASPLIYDLAILTE 320 (397)
T ss_dssp SSHHHHHHHHHTTCSSCCHHHHHHHHHHHTTCEEEECSSSCCCCHHHHHHHHHHTCCEECSCBCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 16999999986699878859999999997599623699755666459999986199665257898755188886999996
Q ss_pred ----------------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 l~~Ri~~k~~~~~~~~~~Vls~LS~~~KaPl~~~g~~~vn~l~kQr~~l~N~lR~~~Gl~p~~~m~lEy~~~lp~~k 397 (397)
T d1vkoa1 321 LASRVSYKVDDEYKPFHSVLSILSLLLKAPVVPPGTPISNAFMRQFSTLTKLVTALAGFPSDTDMQIEFFTQLPAAK 397 (397)
T ss_dssp HHTTEEEESSSSEECCCSBCGGGGGGBSSCCCSTTSCCCCCHHHHHHHHHHHHHHHHTCCCCTTSCGGGTSCCCCCC
T ss_pred HHHEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCC
T ss_conf 64178862254004752077776665268888999866028899999999999998299977754303310055579
|
| >d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Chorismate synthase, AroC superfamily: Chorismate synthase, AroC family: Chorismate synthase, AroC domain: Chorismate synthase, AroC species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=0 Score=29951.84 Aligned_cols=1 Identities=0% Similarity=-1.789 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~r~ttfGESHG~aig~vIdG~PaG~~id~~~i~~~L~RRrpG~~~~~t~R~E~D~veilSGv~~g~TtG~PI~~~I 80 (397)
T d1q1la_ 1 SLRYLRFLTAGESHGKGLTAILEGIPANLPLSEEEINHELRRRQRGYGRGGRMKIEKDTAEILSGVRFGKTLGSPIALFI 80 (397)
T ss_dssp CCSSCEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHHHHTTCC------CCSCCEEEEESEETTEECSSCEEEEE
T ss_pred CCCEEEEECCCCCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECEECCEECCCCEEEEE
T ss_conf 96569996034578984489980508488848999999985689899999866799984799145158980678559999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~N~D~~~~~y~~~~~~~~~~~~~~~~~pRPGHAD~~~~~KYg~~d~r~gggRsSaReTa~rVaAGaIAk~~L~~~gI~v~ 160 (397)
T d1q1la_ 81 RNRDWENWKEKMAIEGEPSPSVVPFTRPRPGHADLSGGIKYNQRDLRNILERASARETAARVAVGAVCKKFLSEFGIKIG 160 (397)
T ss_dssp ECSCC-------------------------------CTTTTTCSSTHHHHHHHSGGGHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred ECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 87876654543322356205554440488887536778874576666766514788999999999999999998498788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 s~v~~IG~i~~~~~~d~~~~~~~~~~~~~~~~~~~s~vrc~d~~~~~~m~~~I~~~r~~gDSvGG~ve~~~~gvP~GLGe 240 (397)
T d1q1la_ 161 SFVVSIGQKEVEELKDKSYFANPEKLLSYHEKAEDSELRIPFPEKDEEFKTYIDEVKEKGESLGGVFEVFALNVPPGLGS 240 (397)
T ss_dssp EEEEEETTEECGGGSSGGGGGCHHHHHHHHHHHTTSTTCCSCGGGHHHHHHHHHHHHTTTCCBCEEEEEEEESCCTTCSC
T ss_pred EEEEEECCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC
T ss_conf 89999866752434555445780233556887650750357656999999999999856886440699999658887667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 pv~~ddkLda~LA~AlmSIpAvKgvEfG~Gf~~a~~~GSe~nD~~~~~~~~~~~~~tN~aGGilGGISnG~pI~~rva~K 320 (397)
T d1q1la_ 241 HIQWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGSQVHDEIGWSEGKGYFRHSNNLGGTEGGITNGMPIVVRVAMK 320 (397)
T ss_dssp SSSGGGCHHHHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTCCCEEEETTTEEEESCCTTTTEETTEECSSCEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC
T ss_conf 73444442489999875040144301265166776630235565313478873355667764245765886089999978
Q ss_pred ----------------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 P~sSI~~~q~Tvd~~~~e~~~~~~gRhDpcivpra~~VvEAm~alvlaD~~L~k~g~d~~~~~~~~~~~y~~~~~~~ 397 (397)
T d1q1la_ 321 PIPTLKNPLRSVDIETKEEMKAGKERTDIVAVPAASVVGEAMLAIVLADALLEKLGGDFMEEVKKRFEDYVNHVKSF 397 (397)
T ss_dssp CCCC------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHCCSBHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 86446775636237898777502799898578763389999999999999999857984999999999999997529
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29946.49 Aligned_cols=1 Identities=0% Similarity=0.469 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~dpi~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia 80 (397)
T d3tata_ 1 MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIA 80 (397)
T ss_dssp CCCCCCCCCCCTTTTHHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 96557778999488999997268998948850787738889988868999999999717666787898555899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~ 160 (397)
T d3tata_ 81 PLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRF 160 (397)
T ss_dssp HHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCH
T ss_pred HHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHCCCEEEEEECCHHHCCCCCH
T ss_conf 99852259767767689845760377888988776533799833662667666279999869979997465142256420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i 240 (397)
T d3tata_ 161 NDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPAL 240 (397)
T ss_dssp HHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCE
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCEECCHHHHHHHHHHHHHCCEEEEEEHHHHHHCCCCCCCCHHHHHHHHCCCCEE
T ss_conf 77899864066552899826899997841788999999999853694699415531001697533114554442277359
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (397)
T d3tata_ 241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRIL 320 (397)
T ss_dssp ECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98447665333576512110011678999988888887752256666078999999860788889999988889999999
Q ss_pred ----------------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~e~~~~L~~e~~V~l~~g~Ri~~a~~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 321 AMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp HHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCCCHHHHHHHTTTTCEECCSSSCCBTTSCCTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 99999999999848998648876898417841919999999999599995798879852599889999999999869
|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29944.37 Aligned_cols=1 Identities=0% Similarity=-1.224 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~p~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~ 80 (397)
T d1vjva_ 1 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPV 80 (397)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 98789988888884079999999998089999999817741011346654322589999999999999985898714879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (397)
T d1vjva_ 81 VLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGDKFSEDFRIQFKTTIKDTANDNDITVKENESDSKLQ 160 (397)
T ss_dssp HHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTHHHHTTTCEEEEEEEEETTEEEEEEEECCCEESCEE
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEEECCCCCCCCEECCEEEEEEE
T ss_conf 99999999704322465566634126689999999999987733213554155120058862336644213540211233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~l~i~l~R~~~~~~~~~~~k~~~~~~~~~~ld~~ 240 (397)
T d1vjva_ 161 CHISGTTNFMRNGLLEGLNEKIEKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVA 240 (397)
T ss_dssp ECCCTTCCBHHHHHHHHHEEC---------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECG
T ss_pred EEECCCEEECHHHHHHHHHHHHCCCCCCCCCCCEEEEECEEECCCCEEEEEEEEEEECCCCCCCCCCCCEEECCCEEECC
T ss_conf 46326412202778764366540534555787523220423238952377766654214556110327625267077525
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (397)
T d1vjva_ 241 DMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEK 320 (397)
T ss_dssp GGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHCCCCHHCCCHHHHCCCCCCCCCCC
T ss_conf 32110233320015676644331111477777640468766532234200011000023100110001000135632123
Q ss_pred ----------------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~~~Y~L~aVv~H~G~~~~~GHY~ay~r~~~~~~~W~~~nD~~V~~v~~~~V~~~~~~~~~~~aYlLfY~r~~~ 397 (397)
T d1vjva_ 321 GENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFGL 397 (397)
T ss_dssp TBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETTC
T ss_pred CCCCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCEECCHHHHHHHHCCCCCCEEEEEEEEECCC
T ss_conf 67899888999999996599999682899989999898999989877799889998750899888189999996489
|
| >d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Bacterial glucoamylase C-terminal domain-like domain: Bacterial glucoamylase, C-terminal domain species: Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]
Probab=100.00 E-value=0 Score=29943.28 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~s~~~lk~~~~~~~~GaiiAsptt~~~e~~~~~~~~~Y~y~W~RDaa~~~~al~~~G~~~~a~~~l~~ 80 (397)
T d1lf6a1 1 NNFNGKANSLYYNSMMILKASEDKTNKGAYIASLSIPWGDGQRDDNTGGYHLVWSRDLYHVANAFIAAGDVDSANRSLDY 80 (397)
T ss_dssp CCTTTTCCHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBSBSCCGGGSBCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99873799999999999998047789964897677886655689889997057272599999999985997999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 l~~~~~~~G~~~~~~~~~G~~~~~~~q~D~~g~~i~a~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~lWEe~~g~~~~t 160 (397)
T d1lf6a1 81 LAKVVKDNGMIPQNTWISGKPYWTGIQLDEQADPIILSYRLKRYDLYDSLVKPLADFIIKIGPKTGQERWEEIGGYSPAT 160 (397)
T ss_dssp HHHHHHHHSSCCSCBCTTSCBCCCCCCHHHHHHHHHHHHHTTCGGGTTTTHHHHHHHHHHHCSSBSSCTTSSCCBBCHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
T ss_conf 99995325877887886798645677776699999999999753406899999999999838887655454457864203
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~aL~~~a~la~~~g~~~~a~~~~~~A~~i~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 240 (397)
T d1lf6a1 161 MAAEVAGLTCAAYIAEQNKDYESAQKYQEKADNWQKLIDNLTYTENGPLGNGQYYIRIAGLSDPDADFMINIANGGGVYD 240 (397)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHEESSCSSTTSCEECSCBSSSCTTSCCEEEETTTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67799999999999886088157999999999999999983428356610243200146666753110001245434456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~lDasll~~~~~g~~~~~d~~~~~tl~~i~~~l~~~~g~~~~~~RY~~D~y~~~~~~~~~~~~~~g~pW~i~T~~~a 320 (397)
T d1lf6a1 241 QKEIVDPSFLELVRLGVKSADDPKILNTLKVVDSTIKVDTPKGPSWYRYNHDGYGEPSKTELYHGAGKGRLWPLLTGERG 320 (397)
T ss_dssp GGGCCCGGGGHHHHTTSSCTTCHHHHHHHHHHHHHSEEEETTEEEECSSTTCCCSCSBTTBCCSSSSCCCBBHHHHHHHH
T ss_pred CCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 67776778763110378788878999999999987166777666654454555343577677667868754999999999
Q ss_pred ----------------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~~g~~A~~~l~~~~~~~~~~G~l~E~~d~~tG~~~g~a~plaWS~A~~i~~~~~l~~~~~~~~~~~~~~~~~~ 397 (397)
T d1lf6a1 321 MYEIAAGKDATPYVKAMEKFANEGGIISEQVWEDTGLPTDSASPLNWAHAEYVILFASNIEHKVLDMPDIVYKRYVA 397 (397)
T ss_dssp HHHHHTTCCCHHHHHHHHHHSCTTSCCCSCBCTTTCCBCSSCSSCHHHHHHHHHHHHHHHHTSCTTSCHHHHHHHTC
T ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC
T ss_conf 99997117999999999976688886350046989984899954788999999999998649976666788887309
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=100.00 E-value=0 Score=29873.07 Aligned_cols=1 Identities=0% Similarity=-2.484 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~l~~l~~~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~ 80 (396)
T d2bwna1 1 DYNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSG 80 (396)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCCEEEECTTSTTEEEEECTTSCEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCC
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 96799999999999859986342012246788740474027998289998852102768999999999999999589864
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~Sr~~~G~~~~h~~LE~~lA~~~g~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~H 160 (396)
T d2bwna1 81 GTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRH 160 (396)
T ss_dssp SBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEHHHHHHCCCHHHHCCCCCCEEEEC
T ss_conf 55244587449999999999974998515540113778889998760367984310534223000143046667337632
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 nd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di 240 (396)
T d2bwna1 161 NDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDI 240 (396)
T ss_dssp TCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSE
T ss_pred CHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCEEEECCCEEEEEECCCCCCCHHHCCCCEEEEE
T ss_conf 36877666776405667616999752367644466176899865424066501210110221666662233187312124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~gTlsKa~g~~Gg~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~ 320 (396)
T d2bwna1 241 FNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL 320 (396)
T ss_dssp EEEESSSTTCSCCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 53124655533554353268999998751213453136757778899999997631207899999999999999889866
Q ss_pred ---------------------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------------------8
Q 001511 467 ---------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 g~~~~~~~spIvpv~ig~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~iw 396 (396)
T d2bwna1 321 GMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLW 396 (396)
T ss_dssp TCCBCCCSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 9986899999799996999999999999999689899987899689997269998576699999999999999859
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29868.73 Aligned_cols=1 Identities=0% Similarity=0.237 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~f~~~~~~p~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~ 80 (396)
T d2q7wa1 1 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQE 80 (396)
T ss_dssp -CTTCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 96445547998599999998466899968830787658889989988999999999618988988997677999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~ 160 (396)
T d2q7wa1 81 LLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD 160 (396)
T ss_dssp HHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHH
T ss_pred HHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCC
T ss_conf 99861698666442013213417899999999886315650899816888430599998599067245434456542210
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (396)
T d2q7wa1 161 ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV 240 (396)
T ss_dssp HHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCC
T ss_conf 57778988515838999568849949336889987788877048819998615354346986674286654562344211
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (396)
T d2q7wa1 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQR 320 (396)
T ss_dssp EEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 33564434445777442446606899999865556665504445787899999999853913678999999999999999
Q ss_pred ---------------------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------------------8
Q 001511 467 ---------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~~e~~~~L~~e~gV~~~~g~Ri~~a~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 321 MRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp HHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 9999999999828988741564897179951879999999999689997799879952898788999999999869
|
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29870.30 Aligned_cols=1 Identities=0% Similarity=0.769 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~iYe~~~~~f~~~~~~~~~g~~~gi~~klidyl~~LGv~~iwl~Pi~~~~~~~~hGY~~~d~~ 80 (396)
T d1m7xa3 1 VVQTEERKKANQFDAPISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLY 80 (396)
T ss_dssp CCCCHHHHHHHSTTSCCEEEEECTTSSCBCTTTCCBCCHHHHHHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEEE
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 96641024578889986799772571477899998879999999899999982998899698887899899896867587
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~vdp~~Gt~~d~~~LV~~aH~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (396)
T d1m7xa3 81 APTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDFALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFL 160 (396)
T ss_dssp EECGGGSCHHHHHHHHHHHHHTTCEEEEEECTTSCCCSTTSSTTGGGSCSSBCC-----------CCCBCTTSHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 71824289899999999985420333201143446786555554567863235678778778877754467772358999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~gvDG~R~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 240 (396)
T d1m7xa3 161 VGNALYWIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGV 240 (396)
T ss_dssp HHHHHHHHHHSCCCEEEECCSHHHHCC--------------CTTCCHHHHHHHHHHHHHHHHSSTTCEEEECCSSCCTTT
T ss_pred HHHHHHHHHHHCCCCEEEECHHHHCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 99999889985786323311423122010011111111103566550289999999999863479946997521787532
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (396)
T d1m7xa3 241 SRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYNYTENFVLPLSHDEVVHGKKSILDRMPGDAWQK 320 (396)
T ss_dssp TBCTTTTBSCCSEEECHHHHHHHHHHHHSCGGGGGGCTHHHHGGGTTTTTSCEEEEECGGGSSTTSCCHHHHSCSSHHHH
T ss_pred CCCCCCCCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 22000354320334211022344430000013444422223100111055521222344322457774223688877899
Q ss_pred ---------------------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------------------8
Q 001511 467 ---------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~la~a~llt~pG~P~IYyGdEiG~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~L~~lR~~~paL~~~~~~ 396 (396)
T d1m7xa3 321 FANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQRLVRDLNLTYRHHKAMHELDFD 396 (396)
T ss_dssp HHHHHHHHHHHHHSSSEEEEETTTTTTCSSCCCTTSCCCGGGGCSSCCHHHHHHHHHHHHHHHHTTCGGGTSCTTS
T ss_pred HHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCC
T ss_conf 9999999999998178547056512487899998887782111476534279999999999999739876460789
|
| >d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Phase 1 flagellin superfamily: Phase 1 flagellin family: Phase 1 flagellin domain: Phase 1 flagellin species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=29804.82 Aligned_cols=1 Identities=0% Similarity=-0.095 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~i~gl~qa~~N~~d~~s~lqtae~al~~~~~iL~r~reLavqaan~t~~~~dr~ai~~E~~~l~~ei~~ia~~T~fng~~ 80 (395)
T d1io1a_ 1 NIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVK 80 (395)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCCC
T ss_conf 97138899998999999999999999999999999999999850578999999999999999999999999737028802
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 Ll~Gs~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (395)
T d1io1a_ 81 VLAQDNTLTIQVGANDGETIDIDLKQINSQTLGLDTLNVQQKYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQK 160 (395)
T ss_dssp TTTSCEEEEEECSSSTTCEEEEEECCCSTTTTTCTTCCCCCCCEEEEEECCCCSEEEEEEECBGGGSTTTCGGGCSSEEE
T ss_pred CCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 23556725897247875058997123310001121100222322333211122222211013443222112232232100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (395)
T d1io1a_ 161 IDGDLKFDDTTGKYYAKVTVTGGTGKDGYYEVSVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVANADLTEAKAAL 240 (395)
T ss_dssp ECSSEEEETTTTEEEEEEEEETCSSCCEEEEEEECTTTCBEEESTTCCSCCTTSSCTTCCEEESEEEEEGGGCHHHHHHH
T ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 01221111101110000011222221000110000133210011222111223444333210001000000120011100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (395)
T d1io1a_ 241 TAAGVTGTASVVKMSYTDNNGKTIDGGLAVKVGDDYYSATQNKDGSISINTTKYTADDGTSKTALNKLGGADGKTEVVSI 320 (395)
T ss_dssp HHTTCCSCEEEEEEEEECTTSCEEEEEEEEEETTEEEEEEECTTSCEEECBCCBBCSSSSCBCCBEEEESTTSCEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 00012233222221113421100145532112221001101222332123322222200233102222234341035412
Q ss_pred --------------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~i~v~t~~~A~~Al~~iD~Ai~~v~~~Ra~lGA~qNRle~ti~NL~~~~~N~~aar 395 (395)
T d1io1a_ 321 GGKTYAASKAEGHNFKAQPDLAEAAATTTENPLQKIDAALAQVDTLRSDLAAVQNRFNSAITNLGNTVNNLTSAR 395 (395)
T ss_dssp TTEEEEHHHHTTCBTTTSCCCCCCCCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 551021123455332222102466488899999999999999999998755698868999998999999998519
|
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29799.33 Aligned_cols=1 Identities=100% Similarity=0.371 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~ld~~g~~~~~~~~~~ls~e~l~~~Yr~M~~~R~~e~~~~~l~~~G~i~~ 80 (395)
T d2bfda1 1 KPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISF 80 (395)
T ss_dssp CCCCTTCCCCCCSSCCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99899987756655455787667888806778999999884236998999999999999999999999999996897012
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~GqEA~~vg~~~al~~~D~~~~~yR~h~~~la~G~~~~~~~ael~g~~~g~~~Grggs~H~~~~~~~~~~~~~ivg 160 (395)
T d2bfda1 81 YMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLA 160 (395)
T ss_dssp CCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTT
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 50898869999999997697780134445367244431789999998740035764456654443323346311344334
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~yaist~~~~~~~~~~i~~ra~~ 240 (395)
T d2bfda1 161 TQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPG 240 (395)
T ss_dssp THHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGG
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHCCHHHHHHHHC
T ss_conf 55107888888765037654443114788754113889999986237743799986133422200210011168876310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~gi~~~~vDG~Dv~aV~~a~~~A~~~~R~g~gP~lIE~~TyR~~~Hs~~DD~~~YR~~~Ei~~w~k~DdPi~~~~~~Li~ 320 (395)
T d2bfda1 241 YGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLS 320 (395)
T ss_dssp GTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-------------------CCHHHHHHHHHTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 35541688337389888888876433312687537887663588887767732466889999988549899999999998
Q ss_pred --------------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~g~~s~ee~~~i~~e~~~eV~~A~~~A~~~p~P~~~~l~~~VYae~p~~l~eq~~~~~~~~~~~~e~~~~~~~~~ 395 (395)
T d2bfda1 321 QGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHFDK 395 (395)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHSCBCCGGGGSTTSSSSCCHHHHHHHHHHHHHHHHHGGGSCGGGBCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCC
T ss_conf 799999999999999999999999999858997989998450159997799999999999996725388455349
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=100.00 E-value=0 Score=29794.28 Aligned_cols=1 Identities=0% Similarity=-2.021 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~ 80 (395)
T d2py6a1 1 DPLAMNDSFLAAADALAVDPMFGIPANVREVIARRGNATRLVILGTKGFGAHLMNVRHERPCEVIAAVDDFRYHSGELYY 80 (395)
T ss_dssp CGGGHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHGGGCEEEEECSSSTHHHHHSCSSSCSSEEEEEECTTTTTSCCEET
T ss_pred CCHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHCCCEEC
T ss_conf 94116778887788754472320868899999850897528997686458999999987794699996684232286533
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 g~pv~s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (395)
T d2py6a1 81 GLPIISTDRFTELATHDRDLVALNTCRYDGPKRFFDQICRTHGIPHLNFEQAVRAFGLQGNVDYRVDDWGADIVRNIPAF 160 (395)
T ss_dssp TEEEECHHHHHHHHHTCTTEEEEECCCSHHHHHHHHHHHHHTTCCEEEHHHHHHHTTCTTSSCGGGSCCHHHHHHTHHHH
T ss_pred CEEEECHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 55751678864344226857999813641122589999876598400157778873774234402444589999869999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~L~D~~S~~~~~~~l~~rl~~d~~~~~~~~~~~~~~YF~~~i~~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~k 240 (395)
T d2py6a1 161 QTLAQRLADDYSVQTLYAVLNFHLTCEPEYYHEVERPYSTLYFRSGLLRFSDSEKMVDCGASIGESLAGLIGVTKGKFER 240 (395)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHCCTHHHHHHCCCGGGTTTSSSSCCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCE
T ss_conf 99998713776599999999998639989985135758776543404676799899997758778899999966899998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 V~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~~alsd~~~~~~f~~~~~~~s~~~~~~~~~~~~~~V~~~tLD~l~~~ 320 (395)
T d2py6a1 241 VWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGENTIRVPFNHEGGHGGFVKPADADHEPADLIDVRPIDDIIDD 320 (395)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECSSCEEEEC--------------------CEEEEECHHHHCSS
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEHHHHCCC
T ss_conf 99993987999999999985622255543999998961661389985179865310135667775189998788995378
Q ss_pred --------------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~id~IKIDVEG~E~~VLkGa~~~Lk~~kPiI~IEiyh~~~d~~~i~~~L~~l~~~Y~~~lR~h~~~~~d~vlY~~ 395 (395)
T d2py6a1 321 APTFIKMDIEGSELSALKGARRAISEHKPKLAISAYHRSTDLLDLTNYILSIRPDYQIGLRHHTPDRWDTCLYFY 395 (395)
T ss_dssp CCSEEEECCSSCHHHHHHTTHHHHHHHCCEEEEECCSSTTHHHHHHHHHHHHCTTCCEEEEECSSSSCCEEEEEC
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEC
T ss_conf 998899968998799999789999867987999995257659999999998636974999668987501489859
|
| >d1aora1 a.110.1.1 (A:211-605) Aldehyde ferredoxin oxidoreductase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Aldehyde ferredoxin oxidoreductase, C-terminal domains superfamily: Aldehyde ferredoxin oxidoreductase, C-terminal domains family: Aldehyde ferredoxin oxidoreductase, C-terminal domains domain: Aldehyde ferredoxin oxidoreductase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=29792.54 Aligned_cols=1 Identities=0% Similarity=0.237 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 vad~~~f~~~~~~~~~~~~~~p~~~~~l~~~GT~~~~~~~~~~g~lP~~Nf~~g~~~~a~~isge~~~~~~~~r~~~C~~ 80 (395)
T d1aora1 1 IADKQKFMLVVREKVNKLRNDPVAGGGLPKYGTAVLVNIINENGLYPVKNFQTGVYPYAYEQSGEAMAAKYLVRNKPCYA 80 (395)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSHHHHTHHHHHCGGGHHHHHHHTTCCCBTTTTBSCCTTGGGGSHHHHHHHTEEEEECCTT
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCC
T ss_conf 98989999999999999982970415321109299999998769877488888889971542899999986146999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 Cpi~C~~~~~~~~~~~~~gpEYEt~~a~Gs~~Gi~d~~~v~~~n~l~d~~GlDtIs~G~~ia~amE~~e~Gll~~e~~gd 160 (395)
T d1aora1 81 CPIGCGRVNRLPTVGETEGPEYESVWALGANLGINDLASIIEANHMCDELGLDTISTGGTLATAMELYEKGHIKDEELGD 160 (395)
T ss_dssp CSSCCEEEEEETTTEEEECCCHHHHHHHTGGGTCCCHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHTTSSCHHHHTT
T ss_pred CCCCCCCEEEECCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHCCC
T ss_conf 98674834770688753687730110300124899999999999999996813887868999999999779887242066
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~l~wGd~e~~~~li~~IA~r~g~G~~LA~G~~~aae~~G~~~~a~~vkg~e~p~~dpr~~~g~~l~yat~~~G~~H~~ 240 (395)
T d1aora1 161 APPFRWGNTEVLHYYIEKIAKREGFGDKLAEGSYRLAESYGHPELSMTVKKLELPAYDPRGAEGHGLGYATNNRGGCHIK 240 (395)
T ss_dssp SCCCCTTCTHHHHHHHHHHHTTCTTHHHHTTCHHHHHHHTTCGGGCCEETTEECCSCCGGGCHHHHHHHHHCTTSSCSGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCHHHEEECCCCCCHHHH
T ss_conf 77879999999999999998467417888223999999959823546744777443377653132311001577640233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~e~~g~~~~~dp~~~~e~k~~~~~~~q~~~~~~dslg~C~F~~~~~~~~~~~~~~~avTG~~~t~e~l~~~geRi 320 (395)
T d1aora1 241 NYMISPEILGYPYKMDPHDVSDDKIKMLILFQDLTALIDSAGLCLFTTFGLGADDYRDLLNAALGWDFTTEDYLKIGERI 320 (395)
T ss_dssp GCTHHHHTTCSSSCCCTTCCSHHHHHHHHHHHHHHHHHHHHTCCGGGGTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 22244754389765785514379999999999999996013434413667999999999997538899999999999999
Q ss_pred --------------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~l~R~fN~r~G~~~~~dD~lP~r~~~ep~~~G~~kg~~~~~e~~l~~YY~~rGWd~~G~Pt~e~L~~LgL~d~~ 395 (395)
T d1aora1 321 WNAERLFNLKAGLDPARDDTLPKRFLEEPMPEGPNKGHTVRLKEMLPRYYKLRGWTEDGKIPKEKLEELGIAEFY 395 (395)
T ss_dssp HHHHHHHHHHHTCCHHHHSCCCHHHHHSCCCSSTTTTCCCCHHHHHHHHHHHHTCCTTSCCCHHHHHHHTCGGGC
T ss_pred HHHHHHHHHHCCCCHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCC
T ss_conf 999999999747983654569887724888878777876789999999999839898898799999976891339
|
| >d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Choline kinase domain: Choline kinase species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=0 Score=29792.24 Aligned_cols=1 Identities=0% Similarity=-1.590 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~~~~~~l~v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllR 80 (395)
T d1nw1a_ 1 GMKELLSTMDLDTDANTIPELKERAHMLCARFLGGAWKTVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLR 80 (395)
T ss_dssp CHHHHHTTCCTTCCGGGCHHHHHHHHHHHHHHHCTHHHHCCGGGEEEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEE
T ss_pred CHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCEEEE
T ss_conf 94445045654566543615899999999986711026899301699991785334348999688775445789817999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 i~g~~~~~idr~~E~~i~~~ls~~gl~Pkll~~~~~g~I~efi~g~~l~~~d~~~~~~~~~iA~~La~lH~~~~~~~~~~ 160 (395)
T d1nw1a_ 81 VYFNPETESHLVAESVIFTLLSERHLGPKLYGIFSGGRLEEYIPSRPLSCHEISLAHMSTKIAKRVAKVHQLEVPIWKEP 160 (395)
T ss_dssp EECSCCCHHHHHHHHHHHHHHHHTTSSSCEEEEETTEEEECCCCEEECCTTGGGSHHHHHHHHHHHHHHTTCCCSSCCSS
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 65996116589999999999975799980899818956999734554883331465555999999999850332236675
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~l~~~~~~lv~CHnDL~~~NiL~~~~~~~~~ 240 (395)
T d1nw1a_ 161 DYLCEALQRWLKQLTGTVDAEHRFDLPEECGVSSVNCLDLARELEFLRAHISLSKSPVTFCHNDLQEGNILLPKASSGNI 240 (395)
T ss_dssp CHHHHHHHHHHHHHHHHSCTTCCEECCGGGSCCEECHHHHHHHHHHHHHHHTTCCCCEEEECSCCCGGGEEEEC------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCCCCCC
T ss_conf 42888999999765431237776434555302444499999999999987430369846885578856376536433222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lID~EYa~~n~~~fDian~f~E~~~~y~~~~~~~~~~~~~~~ps~e~~~~fi~ 320 (395)
T d1nw1a_ 241 RMPSLSDETQALGNSLSAFNPADPRLVLIDFEYASYNYRAFDFANHFIEWTIDYDIDEAPFYKIQTENFPENDQMLEFFL 320 (395)
T ss_dssp ------------------------CCEECCCTTCEEEEHHHHHHHHHHHTTEECCCSSTTSCEECGGGSCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 34553100023444322356888827998542367885066599999997055677666532134234939999999999
Q ss_pred --------------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~Yl~~~~~~~~~~~~~~~~~l~~~v~~~~~~s~l~W~lW~~iq~~~~~~~fDy~~Y~~~Rl~~y~~~k~~l~~~~ 395 (395)
T d1nw1a_ 321 NYLREQGNTRENELYKKSEDLVQETLPFVPVSHFFWGVWGLLQVELSPVGFGFADYGRDRLSLYFKHKQLLKNLA 395 (395)
T ss_dssp HHHHHHTCSCGGGHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHTHHHHHTTC
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999873666510679999999999999998857899999999646448998999999999999999999887119
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=29791.57 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~s~r~~~~~~~ir~i~~~a~~l~~~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia 80 (395)
T d1xi9a_ 1 SIRASKRALSVEYAIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIV 80 (395)
T ss_dssp CCCCCHHHHTCCC-------CHHHHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHH
T ss_pred CCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 96300040357478999999999999779970899899999789999799999999999638898899978999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~ 160 (395)
T d1xi9a_ 81 EREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIR 160 (395)
T ss_dssp HHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCHHHHHH
T ss_conf 86432045231212232322220132100121047999899838833331000320597799984332235431278899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~ 240 (395)
T d1xi9a_ 161 KKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYF 240 (395)
T ss_dssp HHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTC
T ss_pred HHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCHHCC
T ss_conf 76402650899669989754101179999998555425855774121000132222345032078888899958622142
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 320 (395)
T d1xi9a_ 241 ATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGIST 320 (395)
T ss_dssp CGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred CCHHHCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 54010076685187999999999988864378784799999999986087999999999999999999999986799411
Q ss_pred --------------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~p~gg~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~~~e~l~eal~rl~~~l~er 395 (395)
T d1xi9a_ 321 TKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKER 395 (395)
T ss_dssp CCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 589855898178888899999999999999699999847332889979799996489999999999999999549
|
| >d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp121 monooxygenase (P450 Mt2) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=29787.68 Aligned_cols=1 Identities=0% Similarity=-1.587 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~p~~~~~~~~~~~~~~LR~~~Pv~~~~~~~g~~~wvvt~~~dv~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (395)
T d1n40a_ 1 TATVLLEVPFSARGDRIPDAVAELRTREPIRKVRTITGAEAWLVSSYALCTQVLEDRRFSMKETAAAGAPRLNALTVPPE 80 (395)
T ss_dssp -CCCCCBSCCCCCSSSCCHHHHHHHHHCSEEEEECTTSCEEEEECSHHHHHHHHTCTTEESGGGGSTTCCCSSCCSSCGG
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99877789988777677399999995299789874899769997799999999769774768776677654444447817
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~d~~~H~~~R~~~~~~Fsp~~~~~~~~i~~~~~~ll~~l~~~g~~~Dlv~~~a~~l~~~vi~~llG~p~~d~~~~~ 160 (395)
T d1n40a_ 81 VVNNMGNIADAGLRKAVMKAITPKAPGLEQFLRDTANSLLDNLITEGAPADLRNDFADPLATALHCKVLGIPQEDGPKLF 160 (395)
T ss_dssp GGGHHHHHHHTTCHHHHHHHTSSCSTTHHHHHHHHHHHHHHHHHHHCSCEETTTTTHHHHHHHHHHHHHTCCGGGHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76537871579999999987309999988789999999862033356664418888777655457777522345677777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ls~~el~~~~~~l~~AG~eTTa~~ 240 (395)
T d1n40a_ 161 RSLSIAFMSSADPIPAAKINWDRDIEYMAGILENPNITTGLMGELSRLRKDPAYSHVSDELFATIGVTFFGAGVISTGSF 240 (395)
T ss_dssp HTHHHHTBCCSSCCHHHHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHTSGGGTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 65433333200136999999999999878899875103677777666430566665540035678999875200012335
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 l~~~l~~L~~~P~~~~~l~~e~~~~~~~i~E~lRl~~p~~~~~~R~a~~d~~i~G~~ip~G~~V~~~~~~a~rDp~~f~d 320 (395)
T d1n40a_ 241 LTTALISLIQRPQLRNLLHEKPELIPAGVEELLRINLSFADGLPRLATADIQVGDVLVRKGELVLVLLEGANFDPEHFPN 320 (395)
T ss_dssp HHHHHHHHHTCHHHHHHHHHCGGGHHHHHHHHHHTCCCBCSCEEEEESSCEEETTEEECTTCEEEECHHHHHTCTTTSSS
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 67888877629630001110123433323320134554543212210232112234565542022201212456200898
Q ss_pred --------------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------------------~ 467 (1064)
=
T Consensus 321 P~~F~p~R~~~~~~l~FG~G~h~C~G~~lA~~e~~~~l~~ll~r~p~~~l~~~~~~~~~~~~~~~r~~~~LpV~~ 395 (395)
T d1n40a_ 321 PGSIELDRPNPTSHLAFGRGQHFCPGSALGRRHAQIGIEALLKKMPGVDLAVPIDQLVWRTRFQRRIPERLPVLW 395 (395)
T ss_dssp TTSCCTTCSSTTCSSTTCCGGGCCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCBCCSBSBCCBSCCEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCCEEEEEEC
T ss_conf 021387899998877779988369149999999999999999967997888885667461686333871216569
|
| >d1w36b2 c.37.1.19 (B:486-880) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29792.72 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~g~~~p~~~~w~~~~~~~~~~~~~~~~A~~~A~~I~~ll~~~~~~~~~~~~~~~~r~v~~~DIAILvR~~~~~~ 80 (395)
T d1w36b2 1 ALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAA 80 (395)
T ss_dssp TEEEEETTEEECSEEEEECCSSCCCTTHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTEEEECCGGGEEEEESSHHHHH
T ss_pred CCEEEECCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCEEEEEECCHHHH
T ss_conf 95367889768700210389876551309999999999999999971203653004677767788143899983766699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~i~~aL~~~gIP~v~~~~~~~l~~~~ev~~llalL~~l~~p~d~~~l~~~L~sp~~gl~~~~l~~~~~~~~~~~~~~~~~ 160 (395)
T d1w36b2 81 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEF 160 (395)
T ss_dssp HHHHHHHTTTCCEEETTCCCBGGGSSHHHHHHHHHHHHTCTTSHHHHHHHHHSGGGTCCHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999998599859935875432569999999999977455647889998708556999999998751267799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 240 (395)
T d1w36b2 161 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQ 240 (395)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHTTHHHHHHHSSSHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHSCCCCSTTB
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99999998634258999999875499999863671799999998999999998745778899999999986143231233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~daV~ImTIHkSKGLEfpvVflp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Ee~RLlYVA 320 (395)
T d1w36b2 241 QMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVA 320 (395)
T ss_dssp CCCCTTGGGSEEEEETTTTSSCCEEEEEETTTTCCCCCCSCEEECTTTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCEEEEECHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10110256508997114530677778997167668886556666555532225766465578898899999997454645
Q ss_pred --------------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 lTRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~ 395 (395)
T d1w36b2 321 LTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQV 395 (395)
T ss_dssp HTTEEEEEEEEECCCCCSCSCCSSCCGGGGSHHHHHHTCSSCCCHHHHHHHHHHSCSTTEEEEECCCCCCCCCCC
T ss_pred HHHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 734726118997555666788788865778799999707888886779998987457876667789998999879
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=100.00 E-value=0 Score=29723.94 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~T~~vh~g~~~d~~gav~~PI~~sst~~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~le~~la~LEg~~~a~~~ 80 (394)
T d1e5ea_ 1 ERMTPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVAT 80 (394)
T ss_dssp CCCCHHHHHHHSSCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCHHHHHEECCCCCCCCCCEECCCCCCCCEEECCHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99997899646889989999830880488886518889998751688678534598887899999999998298502234
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~d~~~~~~~i~~~t~lv~~Etp~NP~l~v 160 (394)
T d1e5ea_ 81 SSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKI 160 (394)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCCCEEE
T ss_conf 36228889998740233443344541320036767777630543542147899999997516456589994257763122
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~ 240 (394)
T d1e5ea_ 161 IDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGS 240 (394)
T ss_dssp CCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCC
T ss_pred EHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHCCCCEEEECHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 12444420132456708873376547645784011798899612342078743233334431468999999999973277
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~lsp~~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~a 320 (394)
T d1e5ea_ 241 VISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGA 320 (394)
T ss_dssp CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHH
T ss_pred CCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHCCCCCCCCEEEEECCCCHHHH
T ss_conf 78867799999601068899999988899999997652884577577756632155530344667872454026989999
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~f~~~l~l~~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~qAl~~l~~ 394 (394)
T d1e5ea_ 321 KKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDALLR 394 (394)
T ss_dssp HHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCEEECCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 99998088061535668766035785102521189999996698939799976218999999999999999639
|
| >d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=29723.93 Aligned_cols=1 Identities=100% Similarity=1.998 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 M~~ktl~d~d~~~K~VlvR~D~NvPi~~g~I~d~~RI~~~~pTI~~ll~~~akvvl~SH~GRPkgk~~~~~Sl~~~~~~L 80 (394)
T d1phpa_ 1 MNKKTIRDVDVRGKRVFCRVDFNVPMEQGAITDDTRIRAALPTIRYLIEHGAKVILASHLGRPKGKVVEELRLDAVAKRL 80 (394)
T ss_dssp CCBCBGGGSCCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99785111376799999994058776099389758999999999999978998999858889999888655569999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~l~~~v~f~~~~~~~~~~~~i~~l~~g~i~lLEN~Rf~~~E~~nd~~fak~La~l~DiyVNDAF~~aHR~haS~~gi~ 160 (394)
T d1phpa_ 81 GELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENVRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIA 160 (394)
T ss_dssp HHHHTSCCEECSCSSSHHHHHHHHTCCTTCEEECCCGGGSHHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGGG
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCHHHHHHHCCCCCEEEECCHHHHHCCCCCCCCHH
T ss_conf 87406241113443567899999605789788635445354432153889974254488999665136551477511000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~lps~aG~l~ekEi~~L~~~l~~p~rP~~aIiGGaKisdKi~~i~~l~~k~D~i~igG~mantfl~a~G~~iG~sl~e~ 240 (394)
T d1phpa_ 161 HYLPAVAGFLMEKELEVLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEE 240 (394)
T ss_dssp GTSCEEECHHHHHHHHHHHHHHHSCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTHHHHHHHHTTCCCTTSCCCG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 02662001108999999999973899976999706763327999987875357278742287999998599667324331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~a~~i~~~~~~~~~~i~lP~D~v~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGPmG 320 (394)
T d1phpa_ 241 DKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDVIRESKLVVWNGPMG 320 (394)
T ss_dssp GGHHHHHHHHHHHHHHTCEEECCSEEEEESSSSTTSCEEEEEGGGCCTTCEEEEECHHHHHHHHHHHHTCSEEEEESCSS
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHCEEEEECCEE
T ss_conf 14778999998776429865588630432123455662477701214786003567248999999986530589955523
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~fE~~~F~~GT~~l~~~ia~~~~a~sivGGGdT~aai~~~g~~~~~shvSTGGGA~Le~L~G~~LPgi~aL~~k 394 (394)
T d1phpa_ 321 VFEMDAFAHGTKAIAEALAEALDTYSVIGGGDSAAAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALEDK 394 (394)
T ss_dssp CTTSGGGCHHHHHHHHHHHHCTTCEEEECSHHHHHHHHHTTCGGGSSEECSCTHHHHHHHTTCCCHHHHTSCBC
T ss_pred EEECCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCCHHHHHHCC
T ss_conf 56346241899999999996589869995779999999749867885796678999999879997358785169
|
| >d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Cobalamin-independent methionine synthase domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=29720.21 Aligned_cols=1 Identities=0% Similarity=-0.128 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~lG~PRig~~RELK~A~E~yw~G~is~~eL~~~~~~~~~~~~~~Q~~aGid~I~~GeFs~yD~vLD~~~~~g~iP~R 80 (394)
T d1u1ha1 1 ASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNTFAHYDQVLDTTAMLGAVPPR 80 (394)
T ss_dssp CBBCSCCCCSCTTCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTTCSBCEESCCCSSCHHHHHHHHTTCCCGG
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 98767589889761899999999779999999999999999999999998599961559840258899999981996534
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 f~~~~~~~~ld~yFa~arg~~~~~a~emtkwfdtnyhy~vPe~~~~~~~~l~~~~~~~~~~ea~~~g~~~Kpvl~GP~T~ 160 (394)
T d1u1ha1 81 YGYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSY 160 (394)
T ss_dssp GCCCSSSCCHHHHHHHHHCBTTBCCCCEEECTTSSCEEECCEECTTCCCCCCCCHHHHHHHHHHHTTCCCEEEEECHHHH
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 44445666288887887258764444554345789774577407886345540168999998763487646245778999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 l~l~k~~~~~~~~~~~~~ll~~L~~aY~~~l~~L~~aG~~~VQiDEP~L~~dl~~~~~~~~~~ay~~l~~~~~~~~i~l~ 240 (394)
T d1u1ha1 161 LLLSKAAKGVDKSFELLSLLPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLSGLNVLVE 240 (394)
T ss_dssp HHTCEECTTCCTTCCGGGGHHHHHHHHHHHHHHHHHHTCCEEEEECGGGGSCCCHHHHHHHHHHHHHHTTTTTTSEEEEE
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 97753247876544799999999999999999987665988986062021369999999999999999864489974378
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 tyfg~~~~~~~~~l~~~~~Vd~l~lD~~~~~~~l~~~~~~~p~~k~L~~GVVdgrniw~ed~e~v~~~i~~~~~~v~~er 320 (394)
T d1u1ha1 241 TYFADIPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDK 320 (394)
T ss_dssp CCSSCCCHHHHHHHTTCTTCCEEEEETTTCTTHHHHHHHCCCTTCEEEEEEECSSSCBCCCHHHHHHHHHHHHHHSCSSC
T ss_pred ECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 60488763568888636798735788523851148898758755689754681478886999999999999997379200
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 l~lspsCsLlh~P~~~~~e~~l~~~~~~~lafa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~n 394 (394)
T d1u1ha1 321 LVVSTSCSLLHTAVDLINETKLDDEIKSWMAFAAQKVVEVNALAKALAGQKDEALFSANAAALASRRSSPRVTN 394 (394)
T ss_dssp EEEEESSCGGGSCSCGGGCCSSCHHHHHTBCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHCTTTCC
T ss_pred EEEECCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99938998767787174335799889845151999999999999997288308999999999998843887789
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=100.00 E-value=0 Score=29718.30 Aligned_cols=1 Identities=0% Similarity=-1.853 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~p~~~~~~~~pf~i~~~~~~~~~l~~~l~~~r~~~~~~~~~~~~~~~g~~~~~~~~l~~~w~~~~dw~~~e~~ln 80 (394)
T d1qo7a_ 1 KAFAKFPSSASISPNPFTVSIPDEQLDDLKTLVRLSKIAPPTYESLQADGRFGITSEWLTTMREKWLSEFDWRPFEARLN 80 (394)
T ss_dssp CTTCCCCTTCCSCCCBCCCCCCHHHHHHHHHHHHHCCCCCCCTGGGCTTCTTSSCHHHHHHHHHHHHHTCCHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99788999897787364635899999999999984478997445677753459889999999998634389899999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~f~~~i~G~~iHf~h~~~~~~~~~pLlLlHG~P~s~~~w~~vi~~La~~g~~~~~~f~VIaPDLpG~G~S~~P~~~~ 160 (394)
T d1qo7a_ 81 SFPQFTTEIEGLTIHFAALFSEREDAVPIALLHGWPGSFVEFYPILQLFREEYTPETLPFHLVVPSLPGYTFSSGPPLDK 160 (394)
T ss_dssp TSCEEEEEETTEEEEEEEECCSCTTCEEEEEECCSSCCGGGGHHHHHHHHHHCCTTTCCEEEEEECCTTSTTSCCCCSSS
T ss_pred CCCCEEEEECCEEEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 68975999879888999972258998779993665411899999887641135776550444345424347889998777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~y~~~~~a~~~~~l~~~lg~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T d1qo7a_ 161 DFGLMDNARVVDQLMKDLGFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLCAMRAPPEGPSIESLSAAEKEGIARME 240 (394)
T ss_dssp CCCHHHHHHHHHHHHHHTTCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCCCSCSSSCCGGGSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 65788999999998764047624899840765178999887512521015764034322344321000135677888777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~ 320 (394)
T d1qo7a_ 241 KFMTDGLAYAMEHSTRPSTIGHVLSSSPIALLAWIGEKYLQWVDKPLPSETILEMVSLYWLTESFPRAIHTYRETTPTAS 320 (394)
T ss_dssp HHHHHSCHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHTTCHHHHGGGHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 77775555555430125555432024520046677787642244568879999999987500132056799999842235
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------------~ 467 (1064)
=
T Consensus 321 ~~~~~~~~~~~~~i~vPtlv~~g~~D~~~~p~~~~~~~~~~~~~~~~~~~GHf~~~E~Pe~~a~~I~~Fl~~v~ 394 (394)
T d1qo7a_ 321 APNGATMLQKELYIHKPFGFSFFPKDLCPVPRSWIATTGNLVFFRDHAEGGHFAALERPRELKTDLTAFVEQVW 394 (394)
T ss_dssp ------CTTTTTCEEEEEEEEECTBSSSCCCHHHHGGGEEEEEEEECSSCBSCHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHCHHHHHHHHHHHHHHHC
T ss_conf 66222321237840687589980888532589999864684699985994781478699999999999999759
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=0 Score=29718.03 Aligned_cols=1 Identities=0% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~~~~~~d~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~ 80 (394)
T d2ay1a_ 1 MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGE 80 (394)
T ss_dssp CGGGCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 98778878998399999997178998978851787658889989888999999998508878988997778999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (394)
T d2ay1a_ 81 LILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMK 160 (394)
T ss_dssp HHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHH
T ss_pred HHHCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCCEEEEECCCCHHCCCCCCHHHH
T ss_conf 97365654346420003572688889988765428844999832321011899998599799941430101442202688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s 240 (394)
T d2ay1a_ 161 ADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAAS 240 (394)
T ss_dssp HHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 88764136868999479999899989999999999875304289987525122211666664045544443245443345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~ 320 (394)
T d2ay1a_ 241 CSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLRE 320 (394)
T ss_dssp CTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55666677654201030426899999865366765202423224788889887227888999999999999999999999
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~~~~~~L~~~~~V~~~~g~Ri~~a~l~~~~i~~l~~ai~~v~~ 394 (394)
T d2ay1a_ 321 QLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEVGV 394 (394)
T ss_dssp HHHHHHHHHHTSSTTTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 99999998489886036779961698519399999999996898956987899537998889999999998279
|
| >d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: Family B DNA polymerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29711.80 Aligned_cols=1 Identities=0% Similarity=-2.089 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~y~Gg~V~~p~~G~~~~v~~lDf~SLYPsii~~~Ni~p~t~v~~~~~~~~~~~~~~~~~~~~~~~~g~lp~~ 80 (394)
T d1q8ia2 1 NLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIVRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEI 80 (394)
T ss_dssp CTTCSCCCCCCCCCCBCCCCEEEEEEEEEEETTHHHHHHHHHCCCHHHHHHHHHSCSTTTEEECSTTCEEESSSCSHHHH
T ss_pred CCCCCCCCCCCCCEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHH
T ss_conf 99888998899837837999757885588831127999999679965437877678876555786543332001178999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 l~~l~~~R~~~K~~~~d~~Q~a~Ki~~NS~YG~~g~~~~~~~~~~~A~~iT~~Gr~~i~~~~~~~e~~g~~ViygDTDSi 160 (394)
T d1q8ia2 81 VTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDST 160 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSEE
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 99999742100002321024789871221206002455521136788889888589999988631223466650356418
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~E~~~~~~~~~~kk~~~~~~kkrY~g~~~~~~~~~~ 240 (394)
T d1q8ia2 161 FVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRM 240 (394)
T ss_dssp EEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCEEEEEEEEEEEECCCCTTCTTCCSCEEEEEEETTEEEE
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHEEEEHHHHHHHHHHHHHHHCCEEECCCCEE
T ss_conf 99947971245677889999998877656676665113432002553200000022112113234433000011233247
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~KG~e~vRrd~~~~~k~~~~~vl~~i~~~~~~~e~vk~~~~~l~~~~i~~~~i~~~~l~k~~~~y~~~~~~hV~~a~~~ 320 (394)
T d1q8ia2 241 VFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLA 320 (394)
T ss_dssp EEESSCC--CCCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTTTGGGGCC-------------------------
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 88750014666662677898989999963626888899999987605877045044543156000356787699999999
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------------~ 467 (1064)
=
T Consensus 321 ~~~~~~~~~~~~~~~g~~i~Yv~~~~~~~~~~~~~~~iD~~yYi~~qi~~~~~ril~~~~~~~~~~~~~~~~LF 394 (394)
T d1q8ia2 321 DEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF 394 (394)
T ss_dssp -----------------------------------CCCCHHHHHHHTHHHHHHTTGGGGTCCHHHHHHHHHCC-
T ss_pred HHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC
T ss_conf 98766327988899898679999899986577548998789999974089999998762788999974686889
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=0 Score=29716.22 Aligned_cols=1 Identities=100% Similarity=1.998 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~f~~~~~r~~~~s~k~~~~~~~~~~~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~~~~Y~~g~~~Lr~aia~~~~ 80 (394)
T d1c7na_ 1 MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMK 80 (394)
T ss_dssp CCCCSCCCCCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 97678977677999878899999876754997688327997999889999999999857886899987999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~g~~~~~~~I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~ 160 (394)
T d1c7na_ 81 DRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLS 160 (394)
T ss_dssp HHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHH
T ss_pred HHCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 85599888750476334212343321034444332333467662046677654300222222245655540255666553
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 240 (394)
T d1c7na_ 161 KDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTF 240 (394)
T ss_dssp TCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHH
T ss_pred CCCCCEEEEECCCCCCCCEECCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC
T ss_conf 04563299945523565412569995343203454320586145532124588666410111002311103234542001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (394)
T d1c7na_ 241 NIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP 320 (394)
T ss_dssp TCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEC
T ss_conf 22222322223567033445555543003443222221024554200144301311121012321000121256530422
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~p~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~i~eal~rl~~~l~~Lk 394 (394)
T d1c7na_ 321 LIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394 (394)
T ss_dssp CCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf 78950489897888899999999999986999997423418899987999995899999999999999999639
|
| >d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Yeast (Candida albicans) [TaxId: 5476]
Probab=100.00 E-value=0 Score=29714.82 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~rGvNlGgwlv~E~w~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~h~~~~it~~D~~~i~~~ 80 (394)
T d2pb1a1 1 AWDYDNNVIRGVNLGGWFVLEPYMTPSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNL 80 (394)
T ss_dssp CCCTTTCCEEEEECTTSSSCCTTTCGGGTGGGCBTTBCTTSCCSHHHHHHHHCHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred CCCCCCCEEEEEECCHHHCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 97888977898864334305765583344313677765443201888998739687999999998604889999999977
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 G~N~VRiPv~~~~~~~~~~~~~~~~~~~~ld~~i~~a~~~gl~VilDlH~~pg~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (394)
T d2pb1a1 81 GLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLN 160 (394)
T ss_dssp TCCEEEEEEEGGGTCCCTTCCCCCCHHHHHHHHHHHHHHTTCEEEEEEEECTTCSSCCGGGSSTTCCCTTSTTHHHHHHH
T ss_pred CCCEEEEEECHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99889998027884488877552368999999999999799189998511588666767767667644366779999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~ia~~~~~~~~~~~v~g~el~NEP~~~~~~~~~~~~~~~~~~~~IR~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T d2pb1a1 161 VLNTIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYWNNFLTVAEGQW 240 (394)
T ss_dssp HHHHHHHHHSSGGGTTTEEEEESCSCCCGGGSCHHHHHHHHHHHHHHHHHTTCCCCEEEECTTCCTTTTTTSSCGGGTCC
T ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCCCC
T ss_conf 99999999715887770688741356786654378999999999999997389976998488755344444315788886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~vv~d~H~Y~~f~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ge~s~~~~d~~~~~~~~~~~~~~~g~~~~~~~~Ge~ 320 (394)
T d2pb1a1 241 NVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNVAGEWSAALTDCAKWLNGVNRGARYEGAYDNAPYIGSC 320 (394)
T ss_dssp SEEEEEECCSCSSHHHHTCCHHHHHHHHHHHHHHHHTCSSEEEEEECCSCSSCCSTTTTCTTCCCTTBTCSTTCCBCCCS
T ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 27985311434678655689888787663034555315676120201023005666623655342214654787655646
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~d~~~~~~~~~~~~r~~~~aQ~~~~e~~~GW~fWt~K~~~~~~W~~~~~~~~G~iP~~~~~~~~~~~c~~~ 394 (394)
T d2pb1a1 321 QPLLDISQWSDEHKTDTRRYIEAQLDAFEYTGGWVFWSWKTENAPEWSFQTLTYNGLFPQPVTDRQFPNQCGFH 394 (394)
T ss_dssp GGGSSGGGCCHHHHHHHHHHHHHHHHHHHTTTEEEESCSCCSSCGGGCHHHHHHTTCSCSSTTCCSSTTSSCCC
T ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCHHCCCCCCCCCC
T ss_conf 66567101678899999999999999985279678963016999988889998788969991323688888999
|
| >d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29719.12 Aligned_cols=1 Identities=0% Similarity=-0.593 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~s~e~i~~l~KRRgFv~pS~EIYGGlaG~yDyGPlG~~LK~Ni~~~Ww~~fv~~~e~~~~id~~ii~p~~V~kASGHv 80 (394)
T d1atia2 1 AASSLDELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHE 80 (394)
T ss_dssp CCCCHHHHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHH
T ss_pred CCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCC
T ss_conf 93209999999984577415712226710155768427999999999999987540477777513344898886206787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~~g~~~~~t 160 (394)
T d1atia2 81 ATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWT 160 (394)
T ss_dssp HHCEEEEEEC--------------------------------------------------------------------CC
T ss_pred CCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 88764420267777532022677665565543321134555666889999875476866525876178899889867767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnF~~~l~~~r~KlPFGiAQIGk~FRNEIsPr~~l~R~REF~q~Ei 240 (394)
T d1atia2 161 PPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEI 240 (394)
T ss_dssp CCEEEECBEEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEE
T ss_pred CCCHHHHHCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 50022100012323345656336777013069999799999971567880112432211466376557756332212026
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 E~Fv~P~~~~~~~~yw~~~~~~f~~~lGi~~~~lrfrqh~~~ElAHYa~~~~DiE~~fp~Gw~El~GiA~RtdyDL~~H~ 320 (394)
T d1atia2 241 EYFVRPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHT 320 (394)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEEEEEETTEEEEEEEEEECTTHHHHHHC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHCCCCEEEEEEECCCCCEECHHHHCCCHHHHHHHH
T ss_conf 89981785157788899999999998368833336775052355540545278999669985840413143121478776
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------------~ 467 (1064)
=
T Consensus 321 k~~~~~~~~~~~~~~~~s~~~l~~~d~~~~~~~iPhVIEPS~GldR~~la~L~~ay~eee~~~~e~R~vLkl~P 394 (394)
T d1atia2 321 KDQEALGITARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKP 394 (394)
T ss_dssp SSTTTTTCCSCCCCCSCCCSCCCEECSSSCCEECCEEEEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCG
T ss_pred HHCCCCCHHHHHHCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 42033202344312777663467880678907850178758882189999999876434227997259983599
|
| >d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: p450 monoxygenase OxyB species: Amycolatopsis orientalis [TaxId: 31958]
Probab=100.00 E-value=0 Score=29713.46 Aligned_cols=1 Identities=0% Similarity=-2.484 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~p~~~~~~~~dp~~~lr~~~p~~~~~~~~~~~~~~~w~vt~~~dv~~Vl~d~~~f~s~~~~~~~~~~~~~~~~~~~~~ 80 (394)
T d1lfka_ 1 DPRPLHIRRQGLDPADELLAAGALTRVTIGSGADAETHWMATAHAVVRQVMGDHQQFSTRRRWDPRDEIGGKGIFRPREL 80 (394)
T ss_dssp CCSCGGGCEETTEECHHHHTSCSEEEEC------CCCEEEECSHHHHHHHHHCTTTEEECTTCCC-------------CC
T ss_pred CCCCHHCCCCCCCCHHHHHHHCCEEEEECCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 98961104235995799997499058978888888668996799999999759864547765565444565433340432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~ll~~Dg~~H~~~R~~l~~~fs~~~v~~~~~~i~~~~~~ll~~l~~~g~~~Dl~~~~~~~~~~~~~~~~~g~~~~~~~ 160 (394)
T d1lfka_ 81 VGNLMDYDPPEHTRLRRKLTPGFTLRKMQRMAPYIEQIVNDRLDEMERAGSPADLIAFVADKVPGAVLCELVGVPRDDRD 160 (394)
T ss_dssp TTCGGGCCTTHHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCSSEEHHHHTTTTHHHHHHHHHHTCCGGGHH
T ss_pred CCCHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEEECCCCCHHHHH
T ss_conf 34133048756899998854331999999998899999999986520268763025676541111021100475301389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~ag~~tt~~~ 240 (394)
T d1lfka_ 161 MFMKLCHGHLDASLSQKRRAALGDKFSRYLLAMIARERKEPGEGMIGAVVAEYGDDATDEELRGFCVQVMLAGDDNISGM 240 (394)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHGGGSCHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 99998862233210037999999999999999999864002210000001013678989999999999998643205889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~r~~~~d~~~~g~~ip~G~~V~~~~~~~~rdp~~~~d 320 (394)
T d1lfka_ 241 IGLGVLAMLRHPEQIDAFRGDEQSAQRAVDELIRYLTVPYSPTPRIAREDLTLAGQEIKKGDSVICSLPAANRDPALAPD 320 (394)
T ss_dssp HHHHHHHHHHSGGGGGGGSSCHHHHHHHHHHHHHHHCCBSCCSCEEESSCEEETTEEECTTCEEEECHHHHTTCTTTCTT
T ss_pred HHHHHHHHHCCHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCEEECCCCCEEECCCEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999875222045543101223332110000000023321012113567121483542687401232334679212667
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------------~ 467 (1064)
=
T Consensus 321 P~~F~PeR~~~~~lpFG~G~r~C~G~~lA~~e~~~~l~~Ll~~f~~~~l~~p~~~~~~~~~~~~~g~~~lpv~~ 394 (394)
T d1lfka_ 321 VDRLDVTREPIPHVAFGHGVHHCLGAALARLELRTVFTELWRRFPALRLADPAQDTEFRLTTPAYGLTELMVAW 394 (394)
T ss_dssp TTSCCTTSCCCCCCTTCCSTTSCTTHHHHHHHHHHHHHHHHHHCTTCEESSTTCCCEEECSSSBCEEEECEEEC
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEECCCCCCCCEEEEEEC
T ss_conf 33218899999988878987578069999999999999999967988778886766030687777870005359
|
| >d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cullin repeat-like family: Cullin repeat domain: Cullin homolog 1, Cul-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29718.61 Aligned_cols=1 Identities=200% Similarity=2.397 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~d~~W~~L~~ai~~I~~~~~~~~~~~~~lY~~vy~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l 80 (394)
T d1ldja2 1 LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFL 80 (394)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 96349999999999986699997999999999999994487432000111101121000121025457999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~l~~i~~~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~~~~~~I~~~~l~~fr~~v~~~~~ 160 (394)
T d1ldja2 81 KNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLN 160 (394)
T ss_dssp HHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHHHTTTTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999877437879999999999999999999999999886689988604445666541999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~l~~~il~~I~~~R~g~~i~~~li~~~i~~l~~l~~~~~~~~~~~~~~~~Y~~~FE~~~L~~t~~~Y~~~~~~~l~~~~ 240 (394)
T d1ldja2 161 KQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNP 240 (394)
T ss_dssp THHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998678966699999999999994832323330132278878998999999999999999999998498
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~eYl~~v~~~l~eE~~r~~~yl~~~t~~~l~~~l~~~LI~~~~~~l~~~~~~ll~~~~~~~L~~lY~L~~rv~~~~~~l 320 (394)
T d1ldja2 241 VTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGEL 320 (394)
T ss_dssp TTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHHHHHHHHHHSCCTTHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 35899999999999999999746864699999999999999999999999999987165889999999986553518999
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~~~I~~~G~~~i~~~~~~~~~~~~~~V~~ll~l~~~~~~ii~~~F~~d~~f~~~l~~af~~fiN~n~~~~ 394 (394)
T d1ldja2 321 KKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTK 394 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999999997233114578689999999999999999999859988999999999999837666689
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Probab=100.00 E-value=0 Score=29710.25 Aligned_cols=1 Identities=0% Similarity=-1.124 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~q~f~w~~~~~g~~~~~i~~kLdyL~~LGv~aIwL~Pi~~~~~~~~~gY~~~~~yd~~~~~~~~~vd~~~Gt~~d 80 (394)
T d2d3na2 1 TNGTMMQYFEWYLPNDGNHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQ 80 (394)
T ss_dssp CCCCEEECCCTTCCSSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSBTTBCHHH
T ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 98627887742657889719999998999997199989979570178878889786667554434446776888999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 f~~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (394)
T d2d3na2 81 LQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDG 160 (394)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSEECSCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEE
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999987998999971266567664310012235765433334564443444345676556778765444445787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~~~~~~~~w~~~~giDGfR~D~a~~~~~~ 240 (394)
T d2d3na2 161 VDWDQSRRLNNRIYKFRGHGKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKYS 240 (394)
T ss_dssp ESCCTTTCCSSCEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHH
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHH
T ss_conf 65556668888754006888765666652323420267762155888998788876565420567314774224437767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 320 (394)
T d2d3na2 241 FTRDWINHVRSATGKNMFAVAEFWKNDLGAIENYLQKTNWNHSVFDVPLHYNLYNASKSGGNYDMRNIFNGTVVQRHPSH 320 (394)
T ss_dssp HHHHHHHHHHHHHTCCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSCGGGTTTTCHHHHCGGG
T ss_pred HHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHCCCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHH
T ss_conf 89999999987408740210212366632120010033442111037899999999840760539998721511069868
Q ss_pred -------------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~v~fl~NHD~~r~~~~~~~~~~~~~~la~a~~l~~~pGiP~iyyGdE~G~~~~~~p~~r~~~~~l~~~r~~~~~ 394 (394)
T d2d3na2 321 AVTFVDNHDSQPEEALESFVEEWFKPLAYALTLTREQGYPSVFYGDYYGIPTHGVPAMRSKIDPILEARQKYAY 394 (394)
T ss_dssp EEECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGTBCCCHHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 05767288686524455673199999999999984999679972672098998895548999999999998479
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=29636.67 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~ 80 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE 80 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHH
T ss_conf 99899989984899999999997859899994677542211012111343321577887777622797079983078999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~~~~ 160 (393)
T d1i24a_ 81 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGY 160 (393)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCSSE
T ss_pred HHHHHHHHHCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC
T ss_conf 99999975110120012342101232222222222333223354078999998431242011012111223356643233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (393)
T d1i24a_ 161 ITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTAL 240 (393)
T ss_dssp EEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 32222235555542135455777775310012111223310233310123112777654555542223555445655300
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~~~~~~~~~~~~si~el~~~i~~~~~~~~~~~~~ 320 (393)
T d1i24a_ 241 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLGLDVKK 320 (393)
T ss_dssp HHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTTTCCCCE
T ss_pred HHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCE
T ss_conf 15667764497268852012223455333337789998874034330466437898067999999999998761987524
Q ss_pred ------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~~~~~~~~~~~~~d~~k~~~LGw~P~~~~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (393)
T d1i24a_ 321 MTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQFKDRVDTKQIMPSVSWKKIGVKTKSMT 393 (393)
T ss_dssp EEECCSSCSCSSCCCCBCCCHHHHTTCCCCCCCHHHHHHHHHHHHHTGGGCCGGGSSCCCCTTTCCSSCCCC-
T ss_pred EECCCCCCCCCCCEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCC
T ss_conf 5646899889866763789999974994056999999999999999887501764588888750011224669
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29642.46 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 t~~~~~~f~T~~vHag~~~d~~gav~pPI~~ssTf~~~~~~~~~~~y~YsR~gnPT~~~lE~~la~LE~~~~a~~~sSGm 80 (393)
T d1n8pa_ 1 TLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENLERAVAALENAQYGLAFSSGS 80 (393)
T ss_dssp CCCSSCCHHHHHHHTTCCCCSSCCSSCCBCCCSBCCBSSSSSBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEESCHH
T ss_pred CCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf 99878981042077898899898826882788765138864535773353899868999999999971995488834701
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 aAi~~~l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~i 160 (393)
T d1n8pa_ 81 ATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKV 160 (393)
T ss_dssp HHHHHHHHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHH
T ss_pred HHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCEEEECCCCHHHHHCCCHHHH
T ss_conf 67776653035798344322001340344454541255225885135689999851201346723763234320203555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 a~~a~~~~~~~g~~lvVDnT~atP~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p 240 (393)
T d1n8pa_ 161 ADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSP 240 (393)
T ss_dssp HHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCH
T ss_pred HHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHCCCEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCH
T ss_conf 54444201467845998567447044770541898999816644579886026301102166999999998643888986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~a~ll~rgl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~~~~~ 320 (393)
T d1n8pa_ 241 FDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAAS 320 (393)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEEEECCHHHHH
T ss_conf 88999982775034679999998888999997336727997302334543200222103457877148999959999999
Q ss_pred ------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvGlE~~~DLi~Dl~~AL~~a~~ 393 (393)
T d1n8pa_ 321 KFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQATN 393 (393)
T ss_dssp HHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCEECCCCCCCCCEEECCHHHCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 9997188443561677757147376022542289999996598949799986528999999999999999649
|
| >d1xlma_ c.1.15.3 (A:) D-xylose isomerase {Arthrobacter, strain b3728 [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Xylose isomerase domain: D-xylose isomerase species: Arthrobacter, strain b3728 [TaxId: 1663]
Probab=100.00 E-value=0 Score=29640.33 Aligned_cols=1 Identities=0% Similarity=1.500 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~p~~~~~f~~~~Wt~~~~g~dpFG~~t~~~~d~~~~~~~~~~lG~~~~~fHd~D~~p~~~~~~e~~~~~~~~k~~l~~~ 80 (393)
T d1xlma_ 1 VQPTPADHFTFGLWTVGWTGADPFGVATRKNLDPVEAVHKLAELGAYGITFHDNDLIPFDATEAEREKILGDFNQALKDT 80 (393)
T ss_dssp CCCCGGGCEEEEHHHHTCCCCBTTBCCCSCCCCHHHHHHHHHHHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99984456417886146678899898878899999999999981998880352334888998788999999999999853
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 Gl~l~~~t~nlf~~p~~~~Ga~tnPD~~VR~~Ai~~~k~~idia~~LGa~~~v~W~G~~G~~~~~~~d~~~~~~~l~e~l 160 (393)
T d1xlma_ 81 GLKVPMVTTNLFSHPVFKDGGFTSNDRSIRRFALAKVLHNIDLAAEMGAETFVMWGGREGSEYDGSKDLAAALDRMREGV 160 (393)
T ss_dssp TCEEEEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCSEEEECCSSSEESSGGGCCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98110223664334355437756959999999999999999999996898499736888677777658999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~v~~~a~~~g~~~~~~IEpKP~EP~~~~~~~~~~~~l~fl~~~~~~~~~gvnlD~gH~~lag~~~~~~va~a~~~gkLg 240 (393)
T d1xlma_ 161 DTAAGYIKDKGYNLRIALEPKPNEPRGDIFLPTVGHGLAFIEQLEHGDIVGLNPETGHEQMAGLNFTHGIAQALWAEKLF 240 (393)
T ss_dssp HHHHHHHHHHTCSCEEEECCCSCSSSSEESSCSHHHHHHHHTTCTTGGGEEECCBHHHHHTTTCCHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHCCCCE
T ss_conf 99999898629885698611677775554037599999999980894204575204524441577078898998669730
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~vh~Nd~~~~~~D~Dl~~gs~~~~~~~~~~~~l~~g~~~g~~~y~G~~~fD~~~~r~~~~e~~~~~~~~~~~~~~~l~~~ 320 (393)
T d1xlma_ 241 HIDLNGQRGIKYEQELVFGHGDLTSAFFTVDLLENGFPNGGPKYTGPRHFDYKPSRTDGYDGVWDSAKANMSMYLLLKER 320 (393)
T ss_dssp CCEECBCCSSSSCCCBCTTSSCHHHHHHHHHHHHHCCTTCCCCCCSCEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 24426787666666677885469999999999953664678787775588722667887306999999999999999999
Q ss_pred ------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 A~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~e~L~q~~~~~l~g~~ 393 (393)
T d1xlma_ 321 ALAFRADPEVQEAMKTSGVFELGETTLNAGESAADLMNDSASFAGFDAEAAAERNFAFIRLNQLAIEHLLGSR 393 (393)
T ss_dssp HHHHHHCHHHHHHHHHHTTTGGGSCSSCTTCCHHHHHTCGGGTTTCCHHHHTTCCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9997519999999986565021045543899889999788753699845552232689999999999970489
|
| >d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: A4 beta-galactosidase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29637.79 Aligned_cols=1 Identities=0% Similarity=0.735 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~~~p~~~~~~~~~~D~~~~~~~G~n~vR~~i~~W~~iep~~G~~~~~~~d~~i~~~~~~Gi~~iv~l~~~~~P~w~ 80 (393)
T d1kwga2 1 MLGVCYYPEHWPKERWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEWGWLDEAIATLAAEGLKVVLGTPTATPPKWL 80 (393)
T ss_dssp CEEEECCGGGSCHHHHHHHHHHHHHHTCCEEEECTTCHHHHCSBTTBCCCHHHHHHHHHHHTTTCEEEEECSTTSCCHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 94763584549999999999999982999899555346531888992687999999999998799999976777775343
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ne~~~~~~~~~~~~~~~~~~~ 160 (393)
T d1kwga2 81 VDRYPEILPVDREGRRRRFGGRRHYCFSSPVYREEARRIVTLLAERYGGLEAVAGFQTDNEYGCHDTVRCYCPRCQEAFR 160 (393)
T ss_dssp HHHCGGGSCBCTTSCBCCSSSSCCCCTTCHHHHHHHHHHHHHHHHHHTTCTTEEEEECSSSTTTTTTSCCCSHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf 21486501245778504666666667799999999999999998771688537887403555655775443167777778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (393)
T d1kwga2 161 GWLEARYGTIEALNEAWGTAFWSQRYRSFAEVELPHLTVAEPNPSHLLDYYRFASDQVRAFNRLQVEILRAHAPGKFVTH 240 (393)
T ss_dssp HHHHHHHSSHHHHHHHHTTTGGGCCCSSGGGCCCSCSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 88887665299999876530022223676545676555555662565899998777677787889875421465555435
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 320 (393)
T d1kwga2 241 NFMGFFTDLDAFALAQDLDFASWDSYPLGFTDLMPLPPEEKLRYARTGHPDVAAFHHDLYRGVGRGRFWVMEQQPGPVNW 320 (393)
T ss_dssp EECTTCCSSCHHHHGGGSSSEEEEECHHHHHHHSCCCHHHHHHTTTTCCTTHHHHHHHHHHHHTTTCEEEEEECCSCCSS
T ss_pred CCCCCCCCCCHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf 55566656423331256652121355555445566784223444446881688999999997347987036513666666
Q ss_pred ------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~aia~G~~~~gy~~W~~~~~~~E~~~~gL~~~d~~p~~~~~~~~~~~~~l~~~~~~ 393 (393)
T d1kwga2 321 APHNPSPAPGMVRLWTWEALAHGAEVVSYFRWRQAPFAQEQMHAGLHRPDSAPDQGFFEAKRVAEELAALALP 393 (393)
T ss_dssp SSSCCCCCTTHHHHHHHHHHHTTCSCEEEECSBCCSSSTTTTSCCSBCTTSCBCHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 6468889867999999999977998889857557889750010014078899578999999999999974499
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29634.21 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (393)
T d1sq9a_ 1 KVFIATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 80 (393)
T ss_dssp CEEEEEEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred CCEEEEEECCCCCCCCCEEEEEECCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCC
T ss_conf 91582452087636712799996999999979996998789878877654046765420477167666750015799876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~ 160 (393)
T d1sq9a_ 81 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 160 (393)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred EEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCC
T ss_conf 89999489919999822898205651245632431157896689998447886542179998389819998740477534
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 240 (393)
T d1sq9a_ 161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240 (393)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred CEEEEEECCCEECCCCEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 10233103200014510002578986789997899989999389829998602332110000111112425638770046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred CCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCC
T ss_conf 65320112428988421001035321344431156666431023202358666001389888069877999899999999
Q ss_pred ------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~~g 393 (393)
T d1sq9a_ 321 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 393 (393)
T ss_dssp TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred CCEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCEEEECCCCCEECCCCCCCCEEEEEECCCEEEEEECCC
T ss_conf 9799999886876137734899999999999831246998866766312368899799999199089990899
|
| >d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC domain: AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=100.00 E-value=0 Score=29640.47 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 g~~~~~LRYGENPHQ~aA~~~~~~~~~~~~~l~gk~SyNN~lD~daA~~lv~ef~~~~~~Pa~vIiKH~NPCGvAi~~~~ 80 (393)
T d1g8ma2 1 GVSQLPLRYGMNPHQSPAQLYTTRPKLPLTVVNGSPGFINLCDALNAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPL 80 (393)
T ss_dssp TTTEEEESCSSSTTSCCEEEECSSSSCSEEEEESCCCHHHHHHHHHHHHHHHHHHHHHCSCEEEEEETTEEEEEEECCCC
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCC
T ss_conf 99879887976805411386216874316886687027679889999999997465059976999768883366508551
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~e~~~~~~~~~~~~~~~~~l~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~i~~~F~EvIIAP~f~~eAleiL~~KKN 160 (393)
T d1g8ma2 81 SEEEAQVCMVHDLHKTLTPLASAYARSRGADRMSSFGDFIALSDICDVPTAKIISREVSDGVVAPGYEEEALKILSKKKN 160 (393)
T ss_dssp CHHHHHHTTCTTTGGGCCHHHHHHHHHHHSCTTTTTTEEEEESSCBCHHHHHHHHTSCEEEEEESCBCHHHHHHHHHGGG
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHCCEEEEECCCCCCCHHHHHHHCCCCHHCCCCCCHHHHHHHHHCCC
T ss_conf 02332000012211346629999999871485100050788615533210243222020100113455677888742545
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 lRll~~~~~~~~~~~~~~~r~i~gg~L~Q~~d~~~~~~~~~~~v~~~~~~pt~~e~~dL~FAwkVvK~vKSNAIvlak~~ 240 (393)
T d1g8ma2 161 GGYCVLQMDPNYEPDDNEIRTLYGLQLMQKRNNAVIDRSLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDG 240 (393)
T ss_dssp GTCEEEEECTTCCCCSEEEEEETTEEEEEECCCCCCSGGGGCCBCSSSCCCCHHHHHHHHHHHHHHHTSCSSCEEEEETT
T ss_pred CCHHHHCCCCCCCCCCCCEEEEECCEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 21343024644577666367750531110123332455551343202345168899999999999862366458996298
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~tvGIGaGQ~SRVdsv~iA~~KA~~~~~r~~p~v~~~~~k~~~~~~e~~na~~~~~~~~~~~~e~~~~~~~~f~~~~~~l 320 (393)
T d1g8ma2 241 QVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQL 320 (393)
T ss_dssp EEEEEECSCSCHHHHHHHHHHHHHHHHHTTCHHHHTCEECTTCCHHHHHHHHHHHHHTCSCSTHHHHHHHTTEEECCCCC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHH
T ss_conf 68831899765478999999999887764063011000000134555541677651354332035566655420143112
Q ss_pred ------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~~~~~~~g~vlASDAFFPF~D~ie~aa~~Gv~aIiQPGGSirD~evI~aan~~~i~M~fTg~RhF~H 393 (393)
T d1g8ma2 321 TEAEKKQWIAKLTAVSLSSDAFFPFRDNVDRAKRIGVQFIVAPSGSAADEVVIEACNELGITLIHTNLRLFHH 393 (393)
T ss_dssp CHHHHHHHHTTCCCEEEEESSCCSSTHHHHHHHTTTEEEEEEECCCTTHHHHHHHHHHHTCEEEEESCCCCCC
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC
T ss_conf 3788764430357857980268687568999998599399879874251999999998598899878867288
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=29635.54 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~f~w~~~~~~~~~~~i~~kLdyLk~LGv~aI~L~Pi~~~~~~~~~GY~~~d~y~~~~~~~~~~vd~~~Gt 80 (393)
T d1hvxa2 1 AAPFNGTMMQYFEWYLPDDGTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGT 80 (393)
T ss_dssp CCCCCCCEEECCCTTCCSSSCHHHHHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCC
T ss_pred CCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98988648996750668889709999997899997499989979888688889989886676555545556776878899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~df~~LV~~aH~~GIkVIlDvV~NHt~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (393)
T d1hvxa2 81 KAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYH 160 (393)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGG
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999987998999984355446677542110134764334455787444455556777777778776655555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~giDGfR~D~a~~i~ 240 (393)
T d1hvxa2 161 FDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIK 240 (393)
T ss_dssp EEEEEEETTTTEEEEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 78776556677676433268757556555554300101453300557737777788899998876388615642245578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~f~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
T d1hvxa2 241 FSFFPDWLSYVRSQTGKPLFTVGEYWSYDINKLHNYIMKTNGTMSLFDAPLHNKFYTASKSGGTFDMRTLMTNTLMKDQP 320 (393)
T ss_dssp TTHHHHHHHHHHHHHCCCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSCGGGTTTTCHHHHCG
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
T ss_conf 66799999999874477623551002763777777764045655003089999999987038779999999753423784
Q ss_pred ------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~v~fl~NHD~~r~~~~~~~~~~~~~~~a~a~~l~~~pGiP~iyyGdE~G~~~~~~p~~~~~i~~~~~~rk~ 393 (393)
T d1hvxa2 321 TLAVTFVDNHDTEPGQALQSWVDPWFKPLAYAFILTRQEGYPCVFYGDYYGIPQYNIPSLKSKIDPLLIARRD 393 (393)
T ss_dssp GGEEEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCBGGGTBCCCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 3186877578785513444587999999999999982899389883672299996999707786999997179
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Probab=100.00 E-value=0 Score=29635.23 Aligned_cols=1 Identities=0% Similarity=1.101 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~~~~f~w~~~~~gg~~~gi~~kLdylk~LGvtaI~L~Pi~~~~~~~~~gy~~~~~Y~~~~~~~~~~vd~~~Gt~~d 80 (393)
T d1e43a2 1 VNGTLMQYFEWYTPNDGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSE 80 (393)
T ss_dssp CCCCEEECCCTTCCSSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHH
T ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 97617886766778889899999997899997599989969572689888999786567665434456766888999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 f~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (393)
T d1e43a2 81 LQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDG 160 (393)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEE
T ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999986998999870025557775444442235741113566654555344555667778877666555444788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~np~v~~~~~~~~~~w~~~~GiDGfR~Da~~~~~~~f 240 (393)
T d1e43a2 161 ADWDESRKISRIFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSF 240 (393)
T ss_dssp ESCBTTTTBCCEEEECSSSCCCCSSSCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
T ss_conf 87666677677322157645555556555540202332311437714567799998766543486537861345689799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (393)
T d1e43a2 241 LRDWVQAVRQATGKEMFTVAEYWQNNAGKLENYLNKTSFNQSVFDVPLHFNLQAASSQGGGYDMRKLLNGTVVSKHPLKS 320 (393)
T ss_dssp HHHHHHHHHHHHCSCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSCGGGTTTTCSTTTCGGGE
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCE
T ss_conf 99999999874286057766533773776641222044430454117799999877216648899998515111680402
Q ss_pred ------------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 v~fl~nHD~~R~~~~~~~~~~~~~~la~a~ll~~~pG~P~IyyGdE~G~~g~~~~~~~~~~~~i~~l~~~rk~ 393 (393)
T d1e43a2 321 VTFVDNHDTQPGQSLESTVQTWFKPLAYAFILTRESGYPQVFYGDMYGTKGDSQREIPALKHKIEPILKARKQ 393 (393)
T ss_dssp EEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCCCCSSTTCCCCCHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 5755178773413356763479999999999982899479871573299998998867789999999998684
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=0 Score=29570.09 Aligned_cols=1 Identities=100% Similarity=1.201 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~g~~T~~vH~G~~~~~~~g~v~pPI~~ssT~~f~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEg~~~a~~~ 80 (392)
T d1gc0a_ 1 LPGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 80 (392)
T ss_dssp CCCHHHHHHHTTCCGGGGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCCHHCEECCCCCCCCCCCEECCCCCCCCEEECCHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCEEEH
T ss_conf 94812020548988877899950882288887518889999862688688523289886899999999998399511101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~d~~~~~~ai~~~t~lv~~Esp~NP~l~v 160 (392)
T d1gc0a_ 81 ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHM 160 (392)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCEEEE
T ss_conf 44789999998752369980001211110145564321024774224578667999998478787599964666321354
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~ 240 (392)
T d1gc0a_ 161 ADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAV 240 (392)
T ss_dssp CCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCC
T ss_pred CCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 24399999998459879983672574505867848988998665203598554431024306789898899999703886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~p~da~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~~~ 320 (392)
T d1gc0a_ 241 LSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGR 320 (392)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHH
T ss_conf 88045799982206089999999999999999997399865786524458865332133456778379999959999999
Q ss_pred -----------------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------------8
Q 001511 467 -----------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~~AL~aa~ 392 (392)
T d1gc0a_ 321 RFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKASA 392 (392)
T ss_dssp HHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCEEEECCCCCCHHHCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 999858846671246876850108622264228999999759792969998601899999999999999629
|
| >d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: PIWI domain domain: Argonaute homologue Aq 1447 species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=0 Score=29558.89 Aligned_cols=1 Identities=0% Similarity=-1.390 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~ 80 (392)
T d1yvua2 1 KLNFKDTVLDAKGKNTKVITNLRKFLELCRPFVKKDVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSL 80 (392)
T ss_dssp ECCCCCCEECSSCCEECCSSCCHHHHHHCCCCCSCSEEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEE
T ss_pred CCCCHHHEECCCCCCCEEEECCEEHHHHCCCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEECCCCCCE
T ss_conf 92110210135899742223320224324732356634424789999631066799999999999986292645788671
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~Y~~IK~~~~~~gIptQ~i~~~tl~~~~~~~~~~NIa 160 (392)
T d1yvua2 81 ILAQTREEAKEKLIPVINKIKDVDLVIVFLEEYPKVDPYKSFLLYDFVKRELLKKMIPSQVILNRTLKNENLKFVLLNVA 160 (392)
T ss_dssp EECSSTTHHHHHHHHHHTTTSSCSEEEEEEC----------CHHHHHHHHHHHHTTCCCEEEEHHHHHHSCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECHHHCCCCCCHHHHHHHH
T ss_conf 31277511599999998402677789999768888665554047999999985499664898866616898358999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 lqinaKlGGipw~l~~~~~~~tmiIGiDv~h~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ee~~~~~~~~~l~~ 240 (392)
T d1yvua2 161 EQVLAKTGNIPYKLKEIEGKVDAFVGIDISRITRDGKTVNAVAFTKIFNSKGELVRYYLTSYPAFGEKLTEKAIGDVFSL 240 (392)
T ss_dssp HHHHHHTTCCSCEESCCTTCCSEEEEECEEECCCSSSCCCEEEEEEEECTTSCEEEEEEEEECSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99999849834688788999759999998715888984638999999868997789998854776078999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~P~rIIi~RdG~~~~~El~~i~~a~~~~~pki~~IvV~Krh~~Rff~~~~~~~Gt~v~~~~~~~~~~~s~~~~ 320 (392)
T d1yvua2 241 LEKLGFKKGSKIVVHRDGRLYRDEVAAFKKYGELYGYSLELLEIIKRNNPRFFSNEKFIKGYFYKLSEDSVILATYNQVY 320 (392)
T ss_dssp HHHTTCCTTCEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEEEEECSSCCCEECSCSCCTTEEEEBSSSEEEECCSCCCS
T ss_pred HHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCEEECCCCCCCCCCEEECCCCEEEEEECCCCC
T ss_conf 99964999866999958877379999999999864995899999815882656789999998771798929999768857
Q ss_pred -----------------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------------8
Q 001511 467 -----------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 qGT~rP~~Y~vl~d~~~~d~l~~lt~~Lc~l~~~~t~svslPapi~YA~~lA~~~r~~~~p~~~~~~~~~~l 392 (392)
T d1yvua2 321 EGTHQPIKVRKVYGELPVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPIKKEGDIMYWL 392 (392)
T ss_dssp TTCCCCEEEEEEECSSCHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSSCCEEEESCCTTC
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 877788589998898998999999999775126718998007799999999999751178654575524219
|
| >d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Indolic compounds 2,3-dioxygenase-like superfamily: Indolic compounds 2,3-dioxygenase-like family: Indoleamine 2,3-dioxygenase-like domain: Indoleamine 2,3-dioxygenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29564.65 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~f~vs~~~GFLp~~Pl~~LP~~y~~w~~i~~~lp~Ll~~~~lr~~V~~LP~l~~~~l~~~~~~r~a~~~lsfla~aYi 80 (392)
T d2d0ta1 1 SKEYHIDEEVGFALPNPQENLPDFYNDWMFIAKHLPDLIESGQLRERVEKLNMLSIDHLTDHKSQRLARLVLGCITMAYV 80 (392)
T ss_dssp CCSSSCBTTTBTSCSSCCCCCCGGGHHHHHHHHTHHHHHHTTCHHHHHHHCCCCCSTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 97334087768899984565786327999999987887755809999984786784433896999999999999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 w~~~~~~~~~~LP~~Ia~Pl~~vs~~Lg~pP~ltYa~~~L~Nw~~~dp~~~~~~dNl~~i~~F~g~~dE~~F~lv~v~iE 160 (392)
T d2d0ta1 81 WGKGHGDVRKVLPRNIAVPYCQLSKKLELPPILVYADCVLANWKKKDPNKPLTYENMDVLFSFRDGDCSKGFFLVSLLVE 160 (392)
T ss_dssp HTTSSSCCCSEECHHHHHHHHHHHHHHTCCSSCCHHHHTTSSEEESSTTSCSCGGGEEESCCSSTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 07899977778987888999999997499986516556310310058778887330556402789974135789879999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~l~~~~~~~~a~~~~d~~~~~~~l~~i~~~i~~i~~~~~~m~e~~~p~~fy~~~R~fi~G~k~~~~~p~GviYeg 240 (392)
T d2d0ta1 161 IAAASAIKVIPTVFKAMQMQERDTLLKALLEIASCLEKALQVFHQIHDHVNPKAFFSVLRIYLSGWKGNPQLSDGLVYEG 240 (392)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCHHHHHHTHHHHTCCBSSCGGGTTCBEETT
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEEEECCCCCCCCCCEECC
T ss_conf 86446999999999998767758799999999999999999998502029855621423545322437776888730036
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~p~~~~G~SgaQSsii~~lD~~LGv~h~~~~~~l~~~L~~mR~YmP~~HR~Fl~~l~~~~~ir~~v~~~~~~~L~~a 320 (392)
T d2d0ta1 241 FWEDPKEFAGGSAGQSSVFQCFDVLLGIQQTAGGGHAAQFLQDMRRYMPPAHRNFLCSLESNPSVREFVLSKGDAGLREA 320 (392)
T ss_dssp TCSSCBCBCCCCGGGCHHHHHHHHHTTCCSSCSSSHHHHHHHHHGGGSCHHHHHHHHHHHTSCCHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHH
T ss_conf 77776426788766664089999995785668875088999999985739999999999840436788870588899999
Q ss_pred -----------------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------------8
Q 001511 467 -----------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 y~~~v~~l~~FR~~H~~~v~~YIi~~~~~~~~~~~~~~~~~~~~~~gTGGT~~~~fLk~~rd~t~~~~~~~~ 392 (392)
T d2d0ta1 321 YDACVKALVSLRSYHLQIVTKYILIPASQQPKENKTSEDPSKLEAKGTGGTDLMNFLKTVRSTTEKSLLKEG 392 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHTC-------------------CTHHHHHHHHHHHHHHHHTCSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999999999999886641223678888888888217885488999997767887761389
|
| >d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: APH phosphotransferases domain: Methylthioribose kinase MtnK species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=29564.07 Aligned_cols=1 Identities=100% Similarity=0.371 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~e~Lt~~~~~~la~~lg~~~~~~~l~~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E 80 (392)
T d2pula1 1 KTPLYETLNESSAVALAVKLGLFPSKSTLTCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIE 80 (392)
T ss_dssp CCCCCCCCCHHHHHHHHHHTTC-----CCEEEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEECCCCHHCCCCCCCCCCHHHHHHH
T ss_conf 99877269989999999984998988873699807985276899995799848999617713034677788877899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~L~~~~~~~p~~vP~v~~~d~~~~~lvmE~L~~~~~~~~~l~~~~~~~~~a~~lg~~La~~h~~~~~~~~~~~~~~~~ 160 (392)
T d2pula1 81 SSALIRQGEHVPHLVPRVFYSDTEMAVTVMEDLSHLKIARKGLIEGENYPHLSQHIGEFLGKTLFYSSDYALEPKVKKQL 160 (392)
T ss_dssp HHHHHHHHTTCGGGSCCEEEEETTTTEEEECCCTTSEEHHHHHHHTCCCTTHHHHHHHHHHHHHHHTSTTTSCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC
T ss_conf 99999865057988552899859887798713577653022201542128999999999999998735033442111012
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~n~~l~~~~e~~~~~~py~~~~~~~~~~~~~~~~~~l~~d~~l~~~~~~l~~~~~~~~~~LiHGDl~~gNIlv~~~ 240 (392)
T d2pula1 161 VKQFTNPELCDITERLVFTDPFFDHDTNDFEEELRPFVEKLWNNDSVKIEAAKLKKSFLTSAETLIHGDLHTGSIFASEH 240 (392)
T ss_dssp HHHTCCHHHHHHHHHHTTTGGGTTCTTCCCCGGGHHHHHHHHTCHHHHHHHHHHHHHHHHBCCEEECSCCCGGGEEECSS
T ss_pred CCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCEEECCC
T ss_conf 33446578887777640104788988741065455778765520789999999874323688600335776784667599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~vID~E~a~~G~~~~Dlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~ 320 (392)
T d2pula1 241 ETKVIDPEFAFYGPIGFDVGQFIANLFLNALSRDGADREPLYEHVNQVWETFEETFSEAWQKDSLDVYANIDGYLTDTLS 320 (392)
T ss_dssp CEEECCCTTCEEECTHHHHHHHHHHHHHHHHHSCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTTSTTHHHHHHH
T ss_pred CEEEECHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 30895226522287899999999999999740663034568999999999999999999876165500034899999999
Q ss_pred -----------------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------------8
Q 001511 467 -----------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~d~~~~~g~~~~rr~~g~a~~~d~~~i~~~~~r~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 392 (392)
T d2pula1 321 HIFEEAIGFAGCELIRRTIGLAHVADLDTIVPFDKRIGRKRLALETGTAFIEKRSEFKTITDVIELFKLLVK 392 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 999999998889999987341444421315798889999999999999999615512999999999999709
|
| >d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes missouriensis [TaxId: 1866]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Xylose isomerase domain: D-xylose isomerase species: Actinoplanes missouriensis [TaxId: 1866]
Probab=100.00 E-value=0 Score=29562.72 Aligned_cols=1 Identities=0% Similarity=1.500 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~kfs~g~Wt~~~~g~d~FG~~tr~~~~~~e~~~~l~~lG~~g~~fHd~dl~P~~~~~~~~~~~~~~~k~~l~~t 80 (392)
T d1xima_ 1 VQATREDKFSFGLWTVGWQARDAFGDATRTALDPVEAVHKLAEIGAYGITFHDDDLVPFGSDAQTRDGIIAGFKKALDET 80 (392)
T ss_dssp CCCCGGGCEEEEHHHHTCCCCBTTBCCSSCCCCHHHHHHHHHHHTCSEEECBHHHHSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99986673579960366768799998877754799999999985998686067877888998788999999999999863
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 Gl~~~~~t~nlf~~p~f~~Ga~TsPD~~vR~~Ai~~~k~aID~aaeLGa~~~v~W~G~~G~~~~~~~d~~~~~~~~~e~l 160 (392)
T d1xima_ 81 GLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGAKTLVLWGGREGAEYDSAKDVSAALDRYREAL 160 (392)
T ss_dssp TCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEEECTTSEESSGGGCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98234663342447143158877939999999999999999999995898379637877667876558999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~v~dya~d~g~gv~~~IEpKP~EP~~~~~i~d~~~al~~i~~vg~p~~vgvnlD~gH~~~ag~~~~~~ia~a~~~gkL~ 240 (392)
T d1xima_ 161 NLLAQYSEDRGYGLRFAIEPKPNEPRGDILLPTAGHAIAFVQELERPELFGINPETGHEQMSNLNFTQGIAQALWHKKLF 240 (392)
T ss_dssp HHHHHHHHHHTCCCEEEEECCSSSSSSEESSCSHHHHHHHHTTSSSGGGEEECCBHHHHHTTTCCHHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCHHHHHHHHHHCCCEE
T ss_conf 99999887508885598603778887543407799999999971990036674113245433798579999998659789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 hvHlND~~~~~~D~DL~~Gs~~~~~~~~l~~~l~~g~~g~~~~~G~~~fD~~~~r~~~~~~~~~~~~~~~~~~~~l~~~a 320 (392)
T d1xima_ 241 HIDLNGQHGPKFDQDLVFGHGDLLNAFSLVDLLENGPDGAPAYDGPRHFDYKPSRTEDYDGVWESAKANIRMYLLLKERA 320 (392)
T ss_dssp CCEECBCCSSSSCCCBCTTSSSHHHHHHHHHHHHSCGGGSCSCCSCEEECCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99748998989888988898788899999999984777776777875402587677871069999999999999999999
Q ss_pred -----------------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------------8
Q 001511 467 -----------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~l~~d~~~~~al~a~~~~~~~~~tl~~~~~~~~~~a~~~~~~~~~~~~~~~rg~~~~~l~q~~~~~l~~~~ 392 (392)
T d1xima_ 321 KAFRADPEVQEALAASKVAELKTPTLNPGEGYAELLADRSAFEDYDADAVGAKGFGFVKLNQLAIEHLLGAR 392 (392)
T ss_dssp HHHHHCHHHHHHHHHTTSGGGGSCSSCTTCCHHHHHHCGGGTTTCCHHHHHTSCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 998778788999998665663376556564468998767533346877786534369999999999972689
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29489.41 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 k~~T~~vh~g~~~~~~~g~v~pPi~~sst~~f~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEg~~~a~~~~ 80 (391)
T d1cl1a_ 1 KLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFP 80 (391)
T ss_dssp CHHHHHHHTTCCHHHHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTCCCCTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred CCCCCEECCCCCCCCCCCCCCCCEECCCCEEECCHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 91400360898999889984498548885362898999987527766866767899865999999999981995279851
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~d~~~~~~~i~~~t~~i~~EtpsNP~l~v~ 160 (391)
T d1cl1a_ 81 CGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVH 160 (391)
T ss_dssp SHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGTCCTTEEEEEEESSCTTTCCCC
T ss_pred CCCCEEEEHHHCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 50001110222046778769983355520133322011233333200267311122233345553355303576532112
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~ 240 (391)
T d1cl1a_ 161 DVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMV 240 (391)
T ss_dssp CHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCCCCCEEEEECCHHCCCCCCCCCCCEECCCCCCCCCHHHHHCCCCCC
T ss_conf 32789998874157827998534332322111353340677623100036653334420003543210001111001357
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~p~~a~ll~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e~~ 320 (391)
T d1cl1a_ 241 DADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEEL 320 (391)
T ss_dssp CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCHHHH
T ss_conf 85120244435316788999999999999988874465433333222204568988630589876402453388899999
Q ss_pred ----------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~f~d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGlEd~eDLi~Dl~~AL~~i~ 391 (391)
T d1cl1a_ 321 ANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARIV 391 (391)
T ss_dssp HHHHTTCSSCBCCSCCCSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCEECCCCCCCCCCCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 99997499265856778876533478222343579247659996979999561999999999999999669
|
| >d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-epi-vancosaminyltransferase GtfA species: Amycolatopsis orientalis [TaxId: 31958]
Probab=100.00 E-value=0 Score=29485.86 Aligned_cols=1 Identities=100% Similarity=1.998 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 mril~~~~gt~Ghi~P~laLA~~L~~rGh~V~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (391)
T d1pn3a_ 1 MRVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVA 80 (391)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEECSSCSSGGGSCTTCCCTTCGGGHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCEEEECCCCHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 97999858873689999999999998899899997803676898779848987836877734856666999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~l~~~~~~~D~vi~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (391)
T d1pn3a_ 81 EWFDKVPAAIEGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPSEQSQAERDMYNQGADRLFGDAVNSHRASI 160 (391)
T ss_dssp HHHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGGGSCHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999730798478734471378999999980876488531224455312220056788999888778899999874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 240 (391)
T d1pn3a_ 161 GLPPVEHLYDYGYTDQPWLAADPVLSPLRPTDLGTVQTGAWILPDERPLSAELEAFLAAGSTPVYVGFGSSSRPATADAA 240 (391)
T ss_dssp SCCCCCCHHHHHHCSSCEECSCTTTSCCCTTCCSCCBCCCCCCCCCCCCCHHHHHHTTSSSCCEEEECTTCCSTHHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEECCCHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCHHHHH
T ss_conf 37663200024566640231542431157777771565686567655677888642115897278722431223278999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~p~~~ll~~a~~~v~hgG~~t~~Eal~~G~P~v~~P~~~d~~~ 320 (391)
T d1pn3a_ 241 KMAIKAVRASGRRIVLSRGWADLVLPDDGADCFVVGEVNLQELFGRVAAAIHHDSAGTTLLAMRAGIPQIVVRRVVDNVV 320 (391)
T ss_dssp HHHHHHHHHTTCCEEEECTTTTCCCSSCCTTCCEESSCCHHHHHTTSSCEEEESCHHHHHHHHHHTCCEEEECSSCCBTT
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHCCEEEECCCHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 99999998569779994364333445688988995446879998425489852743799999982886899335567745
Q ss_pred ----------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 eQ~~nA~~l~~~G~g~~l~~~~~~~~~l~~~i~~~l~~~~r~~a~~~a~~~~~~g~~~aa~~i~~~l~~~~ 391 (391)
T d1pn3a_ 321 EQAYHADRVAELGVGVAVDGPVPTIDSLSAALDTALAPEIRARATTVADTIRADGTTVAAQLLFDAVSLEK 391 (391)
T ss_dssp BCCHHHHHHHHHTSEEEECCSSCCHHHHHHHHHHHTSTTHHHHHHHHGGGSCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 29999999998798897685789999999999998399999999999999885279999999999987459
|
| >d1nt4a_ c.60.1.2 (A:) Glucose-1-phosphatase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate mutase-like superfamily: Phosphoglycerate mutase-like family: Histidine acid phosphatase domain: Glucose-1-phosphatase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29484.14 Aligned_cols=1 Identities=100% Similarity=0.537 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~vP~g~~L~~V~vl~RHG~R~P~~~~~~~~~~~~~~~~~~~~~~~g~LT~~G~~q~~~lG~~lr~~Y~~~~~l~~~~~~ 80 (391)
T d1nt4a_ 1 QTVPEGYQLQQVLMMSRANLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECP 80 (391)
T ss_dssp CCCCTTEEEEEEEEEECCCCBCCCGGGHHHHHHTCSSCCCCCSSCTTCBCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCC
T ss_pred CCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99899998849999973867999988775313477344778999856110889999999999999998760677787778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~v~vrst~~~Rt~~SA~afl~Gl~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (391)
T d1nt4a_ 81 PPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQ 160 (391)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHHSTTSCCCEECCSCCSSCCTTTCCCCCCCCSHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 70005886178719999999999972788777756443457777666775456652106788787764310243139999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (391)
T d1nt4a_ 161 LLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVL 240 (391)
T ss_dssp HHHHHHTGGGSTTTTTTCCCCTTTCCCEEECCTTSCCEEESHHHHHHHHHHHHHHHHHTTCCTTTGGGGTSCSTTHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99997633022144555555688888888875324766675077776599999999984899997434676769999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~~k~~l~s~HD~ti~~~l~aLgl~~~~~p~~~~~~p~~s~~ 320 (391)
T d1nt4a_ 241 SKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKI 320 (391)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHTHHHHHHHHHHTTTTTTTSCSEEEEECCHHHHHHHHHHTTBCCCCCTTCSSSSCTTCEE
T ss_pred HHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEE
T ss_conf 99999999986287688764022899999999873589886279997156689999998389866788877888976638
Q ss_pred ----------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~fEl~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gC~~~~~~lCpl~~F~~~~~~~i~ 391 (391)
T d1nt4a_ 321 VFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDADGFCPMDKFDSVLNEAVK 391 (391)
T ss_dssp EEEEEEETTTTEEEEEEEEEECCHHHHHHTCCCCSSSCCEEEECCBTTBCCCTTSCEEHHHHHHHHHHHCC
T ss_pred EEEEEECCCCCCCEEEEEEECCCCHHHCCCCCCCEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 99998617888755999986376132035665430103774156479988999996689999999999739
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29483.62 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~ 80 (391)
T d1p3wa_ 1 KLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNL 80 (391)
T ss_dssp CCSEECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHH
T ss_conf 97498537422679999999999999864665787316659999999999999999999739997819997988999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~ 160 (391)
T d1p3wa_ 81 AIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQ 160 (391)
T ss_dssp HHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBC
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCEECHHHHHHHCCCCCEEEEEECCCCCCEEEC
T ss_conf 99642353057998899924654138999999997598899967887872768999975799948999978978881077
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~g~~g~g~~~~~~~~~~~~~~~~~gg~~~~~~~~ 240 (391)
T d1p3wa_ 161 DIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRS 240 (391)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCTTTTTSC
T ss_pred CHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEECCHHCCCCCCCCCCCCCCCCCC
T ss_conf 78999998555895799730122577564202104653212231005788559999855021156875468856667515
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 320 (391)
T d1p3wa_ 241 GTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLA 320 (391)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTSCHHHHHHHTTTEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCEEEEEEECCCCHHHHHHHHCCCE
T ss_conf 74023334453000467887766789999999999999877624806502444567518999857877699999718977
Q ss_pred ----------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~~~~~~~~~~~ 391 (391)
T d1p3wa_ 321 VSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQ 391 (391)
T ss_dssp CBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHCC
T ss_pred EECCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCC
T ss_conf 98262003776540599997399810069889996678899999999999999999999973967786329
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=100.00 E-value=0 Score=29482.12 Aligned_cols=1 Identities=0% Similarity=-0.128 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~~~~~~~~~~~~p~~~~~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~ 80 (391)
T d1gpea1 1 YLPAQQIDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTT 80 (391)
T ss_dssp CCCCCCCCCGGGSBCCGGGTTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTST
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHCCC
T ss_conf 98600145554112791212699664999896789999999998787982999837889888873040888998860897
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~dw~~~t~p~~~~r~~~~~~G~~lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~ 160 (391)
T d1gpea1 81 VDQNYLTVPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAA 160 (391)
T ss_dssp TBCCEECCCCTTSCCCEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHH
T ss_pred CCCCCEEEECCCCCEEEECEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHCCC
T ss_conf 66683413567995741121112576551430378603522334410037998644320378888765315886011035
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~r~s~a~~~~~p~ 240 (391)
T d1gpea1 161 GHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPN 240 (391)
T ss_dssp TCCCCGGGCCBSSSEEEBCCCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCC
T ss_conf 66766445678886432445565545789999999887548721201225765432222211320333442122025763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~~~g~~~~v~A~keVILaAGai~SP~LLl~SGIGp~~~L~~~gI~~ 320 (391)
T d1gpea1 241 YQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQ 320 (391)
T ss_dssp TTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCC
T ss_pred CCCHHHHHHCCCEEEEEEEECCCCCCEEEEEEEECCCCEEEEEEECCEEEEECCHHCCHHHHHHCCCCCHHHHHHCCCCE
T ss_conf 22013443305325688650788874688658833897278998488799926120466899866797388998779988
Q ss_pred ----------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 v~dlP~Gvg~nl~dh~~~~v~~~~~v~~~~~l~~~~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (391)
T d1gpea1 321 LLDLPVGICSMMSRELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYAKSA 391 (391)
T ss_dssp SEECCTTCTCBSCGGGTCSBCTTCBBTTCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEECCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99897541215346766555034345477774331245686220432234443557666689998761249
|
| >d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 4-alpha-glucanotransferase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=29481.72 Aligned_cols=1 Identities=0% Similarity=1.832 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~v~Yei~~~~F~d~~~dg~Gd~~gi~~kLdyl~~LGv~~I~l~Pi~~~~~~~GY~~~d~~~vd~~~Gt~~d~~~lv~~~h 80 (391)
T d1lwha2 1 MIGYQIYVRSFRDGNLDGVGDFRGLKNAVSYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFKAEYGSEREFKEMIEAFH 80 (391)
T ss_dssp CCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHTTCSEEEECCCEECSSSSCCSCSEEEEECGGGCCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 97999815610588999860999999855999975999899797987999999785577874712399999999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~ 160 (391)
T d1lwha2 81 DSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERREWDGEKIWHPLEDGRFYRGLFGPFSPDLNYD 160 (391)
T ss_dssp HTTCEEEEEECTTBCCTTSHHHHHHHTTCHHHHTTBCBCCTTCCTTCBCSSSCCBCEEECTTSCEEECTTCTTSCBBCTT
T ss_pred HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 35987844331013334444433223677655664200377545676546788754333677751236668867753433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 n~~v~~~i~~~~~~w~e~gvDGfR~Daa~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 240 (391)
T d1lwha2 161 NPQVFDEMKRLVLHLLDMGVDGFRFDAAKHMRDTIEQNVRFWKYFLSDLKGIFLAEIWAEARMVDEHGRIFGYMLNFDTS 240 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHTCCEEEETTGGGSSSSHHHHHHHHHHHHTTCCSEEEECCCSCSSSHHHHHHHHEEEECHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEECCCHH
T ss_conf 41146899998888760699700105588877764211588999998765300255411200011034446731134178
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nhD~~~~~~~~~~~~~~~~~~a~~lllt~pG~P~IyyGdE~G~~~ 320 (391)
T d1lwha2 241 HCIKEAVWKENTRVLIESIERAVIAKDYLPVNFTSNHDMSRLASFEGGFSKEKIKLSISILFTLPGVPLVFYGDELGMKG 320 (391)
T ss_dssp HHHHHHHHHTCTHHHHHHHHHHTSSCSSEEEEESCCTTSCCGGGGGGCCCHHHHHHHHHHHTTSSSEEEEETTGGGTCCC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCHHCCCCC
T ss_conf 89999874034899999998631467765000001555543334123201567999999862689987886143027768
Q ss_pred ----------------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~~~~~~r~pm~W~~~~~~~~~~~~~~~~~~~~~~~~nve~q~~~~~s~~~~~~~Li~lRk~~~al~r 391 (391)
T d1lwha2 321 VYQKPNTEVVLDPFPWNESMCVEGQTFWKWPAYNGPFSGISVEYQKRDPDSILSHTLGWTRFRKENQWIDR 391 (391)
T ss_dssp CCCSSCGGGGSCCCCSSTTSCSTTCCCSSCCSSCCSSSSCSHHHHTTCTTSHHHHHHHHHHHHHTCGGGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCHHHCC
T ss_conf 98899865311888878777788888887867897423117999875816899999999999813856239
|
| >d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Bacillus pasteurii [TaxId: 1474]
Probab=100.00 E-value=0 Score=29418.50 Aligned_cols=1 Identities=0% Similarity=-2.554 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 GgiDtHvHfi~Pqq~~~al~sGiTT~~GgGtGpa~gt~att~tpG~~~i~~ml~a~d~~P~N~g~~gkGn~s~~~~l~eq 80 (390)
T d4ubpc2 1 GGIDTHVHFINPDQVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKGHGSSIAPIMEQ 80 (390)
T ss_dssp CEEEEEEECCCTTHHHHHHHTTEEEEEEECCSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSEEEEEEECCCSSHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
T ss_conf 98220003348878999985697366468557777878745689888999999865527823115232666986799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 i~aGa~GlKiHEDwGatpa~id~~L~vad~~dvqv~iHtDtlNE~gfve~T~~a~~gRtiH~~HtEGaGGGHaPDii~~~ 160 (390)
T d4ubpc2 81 IDAGAAGLKIHEDWGATPASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTLRAINGRVIHSFHVEGAGGGHAPDIMAMA 160 (390)
T ss_dssp HHHTCCEEEEEGGGCCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSSSTTTGGGGG
T ss_pred HHHHHHEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHC
T ss_conf 98655005013113647789999999864059268985387510101165899867962111467888889883268763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 g~~nvLpsSTnPT~Pyt~nt~~EhldM~MvcHhL~~~ipeDvafAesRiR~eTiaAEdvLHD~GaiSi~sSDsQaMGRvg 240 (390)
T d4ubpc2 161 GHPNVLPSSTNPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAMGRAG 240 (390)
T ss_dssp GSTTEEEBCCSTTSSCBTTHHHHHHHHHHHHHTCCTTSHHHHHHHHHHSCHHHHHHHHHHHHTTSSCBCCCCBTTSSCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCC
T ss_conf 77865578999887886672666367377641479888026777763033012326777652486444136753246400
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 Evi~Rtwq~A~kmk~qrG~l~~d~~~~DN~RvkRYiAKyTINPAIahGish~VGSvE~GKlADG~a~~~tsvtFVSqaAi 320 (390)
T d4ubpc2 241 EMVLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADGDLIHDTNITFMSKSSI 320 (390)
T ss_dssp CHHHHHHHHHHHHHHHHCSCTTCCSSCCHHHHHHHHHTTTHHHHHHHTCTTTSSSCCTTSBCCTTHHHHSCEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHH
T ss_conf 67776778898877751489875566777013202530246806750741125764678434876345764899858887
Q ss_pred ---------------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------------8
Q 001511 467 ---------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------------------------~ 467 (1064)
=
T Consensus 321 d~Gi~e~LGL~k~l~pVkn~R~ItKkDMk~Nda~P~IeVDPETYeV~aDGelltcePA~~LPLAQRYFLF 390 (390)
T d4ubpc2 321 QQGVPAKLGLKRRIGTVKNCRNIGKKDMKWNDVTTDIDINPETYEVKVDGEVLTCEPVKELPMAQRYFLF 390 (390)
T ss_dssp HTTHHHHHTCCSEEEECCCCSSCCGGGSTTCCCCCCCEECTTTCCEEETTEECCCCCBSCCSSSTTTCCC
T ss_pred HCCCHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCEEECCCCEEEEECCEEECCCCCCCCCCHHCCCCC
T ss_conf 5777677088644886058887786785015789983689986689889999046876756630120177
|
| >d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29414.71 Aligned_cols=1 Identities=0% Similarity=0.570 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 mktl~d~~~~~k~Vl~R~D~NvPi~~g~i~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~Sl~~v~~~l~~~ 80 (390)
T d1v6sa_ 1 MRTLLDLDPKGKRVLVRVDYNVPVQDGKVQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGPDPKYSLAPVGEALRAH 80 (390)
T ss_dssp CCBGGGSCCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCSSCCGGGCSHHHHHHHHHH
T ss_pred CCCHHHCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 97412258789999999403777559908976899999999999997899899995589999989761379999999752
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 l~~~v~~~~~~~~~~~~~~~~~l~~g~i~lLENvRF~~~E~~nd~~f~~~La~l~DiyVNDAF~~aHR~haS~vgi~~~l 160 (390)
T d1v6sa_ 81 LPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARLL 160 (390)
T ss_dssp CTTEEECCSCTTSHHHHHHHHTCCTTCEEECSCGGGSTTTTTTCHHHHHHHGGGCSEEEECCGGGTTSCCCCCCCGGGTS
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCEEEEHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHCCCCCCCHHHH
T ss_conf 46532653101122122222346665378651123245521165277776652476589631466665056622501333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ps~aG~l~ekEi~~L~~~l~~~~rP~vaIlGGaKvsdKi~~i~~l~~k~D~iiigG~mAntFL~a~G~~IG~sl~e~~~~ 240 (390)
T d1v6sa_ 161 PAYAGFLMEKEVRALSRLLKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRL 240 (390)
T ss_dssp CEEECHHHHHHHHHHHTTTSSCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCCHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 45668999999999999985446750899834640236999999997525666644177999997597668634431146
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~a~~~~~~i~lp~dv~~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGPmGvfE 320 (390)
T d1v6sa_ 241 DLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFARALEGARTVFWNGPMGVFE 320 (390)
T ss_dssp HHHHHHHHHHHHHTCEEECCSEEEEESSCCTTCCCEEEETTBCCTTCEEEEECHHHHHHHHHHTTTCSEEEEESCSSCTT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 66676777654302333333211220123677532356433310024432000134677887750264489975644502
Q ss_pred ---------------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------------8
Q 001511 467 ---------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~F~~GT~~i~~aia~~~~a~sIiGGGdT~aai~~~g~~~~fshVSTGGGA~Le~L~G~~LPgi~aL~~ 390 (390)
T d1v6sa_ 321 VPPFDEGTLAVGQAIAALEGAFTVVGGGDSVAAVNRLGLKERFGHVSTGGGASLEFLEKGTLPGLEVLEG 390 (390)
T ss_dssp STTTTHHHHHHHHHHHTCSSCEEEEESHHHHHHHHTTTCGGGSSEECCSSSHHHHHHHHSCCHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCCCHHHHCC
T ss_conf 5743079999999998558997999488999999974986787179577899999977999642143159
|
| >d1nsca_ b.68.1.1 (A:) Influenza neuraminidase {Influenza B virus, different strains [TaxId: 11520]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Influenza neuraminidase species: Influenza B virus, different strains [TaxId: 11520]
Probab=100.00 E-value=0 Score=29413.48 Aligned_cols=1 Identities=0% Similarity=-1.622 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~r~ge~~~n~~~lVtREPyVSC~p~eC~~FaL~QGt~l~~kHSNgTi~DRsp~RtL 80 (390)
T d1nsca_ 1 EPEWTYPRLSCQGSTFQKALLISPHRFGEARGNSAPLIIREPFIACGPKECKHFALTHYAAQPGGYYNGTREDRNKLRHL 80 (390)
T ss_dssp CCCCCCCCCBCSCSSEEEEEEECGGGGCCTTSCCCBEEEEEEEEEECSSCEEEEEEEEEEESSSSCCTTTTCSCCSSCEE
T ss_pred CCCCCCCCEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEECCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHEE
T ss_conf 97554451210452123420227210254446674069727601018430145862054111686668841456411201
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~s~~lG~~P~~~ns~f~~vaWSsssCHDGk~wl~i~vtG~d~nA~A~~~Y~g~~tdsI~SW~~nILRTQESeCvCinG~C 160 (390)
T d1nsca_ 81 ISVKLGKIPTVENSIFHMAAWSGSACHDGREWTYIGVDGPDSNALIKIKYGEAYTDTYHSYANNILRTQESACNCIGGDC 160 (390)
T ss_dssp EEEETTSCCBTTTCEEEEECSEEEEEECSSCEEEEEEESCGGGCEEEEEETTEEEEEEECSSSSCCEECSSCCEEETTEE
T ss_pred EECCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEECCEEEEEHHHHHHHHCCCCCCCEEEECCEE
T ss_conf 22326799965663379987652433688724899878698872899998999964055334310200432048989989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~vvMTDGpA~~~A~~ki~~i~eGkIi~~~~l~g~~~HiEECSC~Yp~~~~V~CVCRDNW~GsNRPvv~in~~~~s~~~gY 240 (390)
T d1nsca_ 161 YLMITDGSASGISKCRFLKIREGRIIKEIFPTGRVEHTEECTCGFASNKTIECACRDNSYTAKRPFVKLNVETDTAEIRL 240 (390)
T ss_dssp EEEEEEECTTSCEEEEEEEEETTEEEEEECCEESCSBCEEEEEEESSSSEEEEEEECSSSCSSCEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEE
T ss_conf 99992688778542589998456288776058886724752115899881699970788888998499545534145315
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 vCSGl~~DTPR~~D~s~tg~C~~n~~~G~~GVKGgf~~~~~~~~~~vW~GRTiS~~SRSGfE~~kV~~gw~~~~s~~~~~ 320 (390)
T d1nsca_ 241 MCTETYLDTPRPDDGSITGPCESNGDKGRGGIKGGFVHQRMASKIGRWYSRTMSKTERMGMELYVRYDGDPWTDSDALAH 320 (390)
T ss_dssp CCCSSCCSSSCCCTTCCCSSTTCCCSCCSSCCCCCEEEEECSSCEEEEEEECSSSSSSEEEEEEEEESSCTTTCCCCCEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCEEE
T ss_conf 85366578999888887767888876888863565011012468874764420476667507999778987768620005
Q ss_pred ---------------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------------8
Q 001511 467 ---------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~q~iV~~~n~sgYSg~F~~~~k~C~~pCF~VElIRGrp~e~WTSnS~vvfCg~~s~~~~wswpDGA~i~l 390 (390)
T d1nsca_ 321 SGVMVSMKEPGWYSFGFEIKDKKCDVPCIGIEMVHDGGKKTWHSAATAIYCLMGSGQLLWDTVTGVDMAL 390 (390)
T ss_dssp EEEEEEEEEECCCEEEEEEECSSSEEEEEEEEEEECCCTTSCCEEEEEEEEECSSSCCCCCCCCCCCTTC
T ss_pred EEEEEECCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCEECCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 7899953788862178998589853022899997288766501375699972589977866998656689
|
| >d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=29410.24 Aligned_cols=1 Identities=0% Similarity=-1.124 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~g~~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~~grpTPL~~~~~Ls~~lg~~IylK~E~ln 80 (390)
T d1qopb_ 1 TTLLNPYFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLL 80 (390)
T ss_dssp CCSSCCEETTEEEEESCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHTTSSEEEEEEEGGGS
T ss_pred CCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHEHHHHHHHHCCEEEEEEECCC
T ss_conf 98777865683999687888999999999999997397899999999874489996553758654535977999971487
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ptGS~K~R~a~~~i~~A~~~G~~~iv~easaGN~g~a~A~aaa~~Gl~~~I~mp~~~~~~k~~~v~~m~~~GAeVv~v~~ 160 (390)
T d1qopb_ 81 HGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS 160 (390)
T ss_dssp TTSBTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECC
T ss_conf 44656604899999987543873023103477899999999985367459963320011235888999865966999527
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~e~~~q~~~~~g~~pD~vv~~vGgGs~~~G~~ 240 (390)
T d1qopb_ 161 GSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMF 240 (390)
T ss_dssp TTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHEE
T ss_conf 85136676999999976333555530343234334654110156655012389999970986306886235410111100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~f~~~~~~~~ig~ep~~~g~~~~~~~a~~~~g~~g~~~~~~~~~~~~~~g~~~~~~s~a~gl~~~~~~~~~~~l~~~g~ 320 (390)
T d1qopb_ 241 ADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGR 320 (390)
T ss_dssp GGGTTCTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEEEEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHTTS
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 11004663248613566356565444551035744554112454113688864443222455334662067899986286
Q ss_pred ---------------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------------8
Q 001511 467 ---------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~vtD~Ea~~a~~~La~~EGI~~a~Esa~Ava~Ai~~a~~~~~~~~~VVv~lsG~G~kD~~~~~~~l 390 (390)
T d1qopb_ 321 ADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTVHDIL 390 (390)
T ss_dssp SEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHHSTTSCEEEEEEECBBCGGGHHHHHHHC
T ss_pred EEEEEECHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHC
T ss_conf 3999999999999999999966984168269999999998635579998899997889734799999639
|
| >d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Hypothetical oxidoreductase yqhD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29408.76 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~m~~f~f~~P~~I~fG~g~l~~l~~~~~~~~~vliV~~~~~~~~~g~~~~v~~~L~~~~~~~f~~v~~~p~~~~v~~~ 80 (390)
T d1oj7a_ 1 KAGLNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNA 80 (390)
T ss_dssp CBCCCCEEEEEEEEEEESTTGGGGHHHHSCTTCEEEEEECSSHHHHHSHHHHHHHHTTTSEEEEECCCCSSCBHHHHHHH
T ss_pred CCCCCCCEEECCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 99888808748986898569999999998679988999897168774399999997189947999282379999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~D~IIavGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagtgse~t~~avi~~~~~ 160 (390)
T d1oj7a_ 81 VKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTT 160 (390)
T ss_dssp HHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSSCGGGSSEEEEEETTT
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99976337877985478854408999999751874300344312466433467873335665443111243101124443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~k~~~~~~~~~P~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s~~~~~~~~~~~a~~~~~~~~~~l~~a~~~~~d 240 (390)
T d1oj7a_ 161 GDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIHDRFAEGILLTLIEDGPKALKEPEN 240 (390)
T ss_dssp TEEEEEECGGGSCSEEEECGGGGTTCCHHHHHHHHHHHHHHHHHHHSSSCBCCHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCEECCCHHHCCCCEEEEHHHHCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCC
T ss_conf 11000110000145046514430369744430322558888889871775321230367765555530134777760446
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~ar~~l~~as~~a~~~~~~~g~~~~g~~Hal~h~l~~~~~v~HG~~~ai~lp~v~~~~~~~~~~~~~~~a~~~~~~~~~ 320 (390)
T d1oj7a_ 241 YDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEG 320 (390)
T ss_dssp HHHHHHHHHHHHHHSSSTTTTTSCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999888888998865540486666531344334310268765311233221332001111599999999995485469
Q ss_pred ---------------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------------8
Q 001511 467 ---------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~e~~~~~i~~i~~~~~~lglP~~L~e~Gv~~~~i~~la~~~~~~~~~~~~np~~l~~d~i~~il~~A~ 390 (390)
T d1oj7a_ 321 SDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAAR 390 (390)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCCSGGGGTCCSTTHHHHHHHHHHTTCSSBTTTTCBCHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHCC
T ss_conf 9699999999999999998498999899199999999999999863555309997899999999999509
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Probab=100.00 E-value=0 Score=29409.29 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~i~~kLdyLk~LGvt~I~l~Pi~~~~~~~~~gY~~~d~~~~~~~~~~~~vd~~~Gt~ 80 (390)
T d1ud2a2 1 DGLNGTMMQYYEWHLENDGQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTK 80 (390)
T ss_dssp CCCCCCEEECCCTTCCCSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCH
T ss_pred CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 99777699844057788897799999979999976998899697803888889998866774445554457768889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~efk~lV~~~H~~GI~VilDvV~NHt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (390)
T d1ud2a2 81 AQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHF 160 (390)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCGGGTTSSCCCCBCGGGE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999998558813898714554676630344420268654332345543445554556776677678776543445
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~dg~r~D~~~~~~~~~ 240 (390)
T d1ud2a2 161 NGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWY 240 (390)
T ss_dssp EEEEEETTTTEEEEEEETTCCCCSSCCCTTSCCCCCSSEEECTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHHH
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCHHHCCHHH
T ss_conf 78876655777751211687655555422222222334410004889999988765301210124653334320067677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (390)
T d1ud2a2 241 TSDWVRHQRNEADQDLFVVGEYWKDDVGALEFYLDEMNWEMSLFDVPLNYNFYRASQQGGSYDMRNILRGSLVEAHPMHA 320 (390)
T ss_dssp HHHHHHHHHHHCSSCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHHCTTSCGGGTTTTCHHHHCGGGE
T ss_pred HHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCE
T ss_conf 88888887643202103411124786110101245432333203678889999875134469999987533033783326
Q ss_pred ---------------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------------8
Q 001511 467 ---------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 v~fl~nHD~~r~~~~~~~~~~~~~~~~~~~il~~~pG~P~iy~GdE~G~~~~~~~~~~d~i~~l~~~R~~ 390 (390)
T d1ud2a2 321 VTFVDNHDTQPGESLESWVADWFKPLAYATILTREGGYPNVFYGDYYGIPNDNISAKKDMIDELLDARQN 390 (390)
T ss_dssp EECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGTBCCCHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 8870277665400013675789999999999985799849974265097998985126888999997389
|
| >d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=0 Score=29341.15 Aligned_cols=1 Identities=0% Similarity=-2.554 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 GiDtHvHfi~Pqq~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~i~~ml~a~d~~P~N~g~~gkGn~s~~~~l~eqi 80 (389)
T d1e9yb2 1 GIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGNASNDASLADQI 80 (389)
T ss_dssp EEEEEEETTCTTHHHHHHHTTEEEEEEECCSSCHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEECCCSCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 95545334488789999856870774586588877776552797608999998600377253662116779837899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~aGa~GlKiHEDwGatp~~Id~~L~vad~~dvqv~iHtDtlNE~Gfve~T~~a~~gRtiH~~HtEGaGGGHAPDii~~~~ 160 (389)
T d1e9yb2 81 EAGAIGFKIHEDWGTTPSAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAG 160 (389)
T ss_dssp HTTCSEEEECGGGCCCHHHHHHHHHHHHHTTCEEEECCCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSCSTTTGGGGGG
T ss_pred HHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHCC
T ss_conf 72303220231026787888899998775095389438976654303648998679752003137777777617888705
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~nvLpsSTnPT~Pyt~nt~~EhldMlmvcHhL~~~ipeDvafAesRiR~eTIaAEdvLhD~GaiSi~sSDsqaMGRvgE 240 (389)
T d1e9yb2 161 EHNILPASTNPTIPFTVNTEAEHMDMLMVCHHKDKSIKEDVQFADSRIRPQTIAAEDTLHDMGAFSITSSDSQAMGRVGE 240 (389)
T ss_dssp STTEEEEECGGGCSCBTTHHHHHHHHHHHTTTCCSSCHHHHHHHHHHCCHHHHHHHHHHHHTTSCCEECCCTTSSCCTTS
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHCHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHH
T ss_conf 77766788999878666628886345241034798980267777630330223367776336854531366644443677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 vi~RtwQtA~kmk~~rG~l~~d~~~~DN~RvkRYiAKYTINPAIahGis~~VGSvE~GK~a~G~A~~~tSvtFVSqaAid 320 (389)
T d1e9yb2 241 VITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVHHGKAKYDANITFVSQAAYD 320 (389)
T ss_dssp HHHHHHHHHHHHHHHHCSCSSCCSSSCHHHHHHHHGGGTHHHHHHTTCTTTSSSSCTTSBGSTTHHHHHCEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHH
T ss_conf 89999998999998863687667776427777666650568577558211048625366135867665635886688875
Q ss_pred --------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------------~ 467 (1064)
=
T Consensus 321 ~Gi~~~LGL~K~l~pVkn~R~ItK~DM~~Nda~P~IeVDPETYeV~aDGelltcePA~~LPLAQRYFLF 389 (389)
T d1e9yb2 321 KGIKEELGLERQVLPVKNCRNVTKKDMQFNNTTAHIEVNPETYHVFVDGKEVTSKPANKVSLAQLFSIF 389 (389)
T ss_dssp TTHHHHTTCCSEEEECCCCSSCCGGGSTTCCCCCCEEECTTTCCEEETTEECCCCCBSCCSSSTTTCCC
T ss_pred CCCHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCEEECCCCEEEEECCEECCCCCCCCCCCHHCCCCC
T ss_conf 787677387752786138887887785115789982689997689889999135765657630110177
|
| >d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Dehydroquinate synthase, DHQS domain: Dehydroquinate synthase, DHQS species: Aspergillus nidulans [TaxId: 162425]
Probab=100.00 E-value=0 Score=29332.57 Aligned_cols=1 Identities=0% Similarity=-0.892 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 p~~i~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ivtD~~v~~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~~gE~~ 80 (389)
T d1sg6a_ 1 PTKISILGRESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVS 80 (389)
T ss_dssp CEEEEETTEEEEEEETTHHHHTHHHHHHHHSCCSEEEEEEEHHHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGG
T ss_pred CCEEEECCCCCEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
T ss_conf 91688769731898888078775999984179981899978965898999999999870742146762489981698452
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 Ks~~~~~~i~~~~~~~~~~~~r~d~IiaiGGG~v~D~ak~~A~~y~rgi~~i~vPTtlla~~Das~g~k~~in~~~~kn~ 160 (389)
T d1sg6a_ 81 KSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNL 160 (389)
T ss_dssp SSHHHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHGGGCCEEEEEECSHHHHHTTTSSCEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCHHCCCCCCCCCEEEECCCCCCCE
T ss_conf 89999999999999628876777569996563477889999999855876367314021256653232134211366421
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~g~~~~P~~V~iD~~~l~tlP~r~~~aG~~e~ik~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~I 240 (389)
T d1sg6a_ 161 IGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRREVTPGEHRFEGTEEILKARI 240 (389)
T ss_dssp EEEECCCSEEEEEGGGGGTSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCCCCTTSCTTGGGHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHH
T ss_conf 21012045552005554341799998634235553212687888899986999987544201201322104699999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~s~~~k~~iv~~d~~e~g~r~~ln~GHt~~HAlE~~~~~~~lHGEaVaiGml~~~~ls~~~g~l~~~~~~~i~~~l~~l 320 (389)
T d1sg6a_ 241 LASARHKAYVVSADEREGGLRNLLNWGHSIGHAIEAILTPQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAY 320 (389)
T ss_dssp HHHHHHHHHHHHC-----CGGGGGGTTHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 99999863202333443263310135466788887632234568889998899999999993799999999999999986
Q ss_pred --------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 gLPt~l~dl~~~~~~~~~~~~~~~l~~~~~~DKK~~~~~i~~vl~~~iG~~~~~~~~~~~~~~i~~~L~ 389 (389)
T d1sg6a_ 321 GLPTSLKDARIRKLTAGKHCSVDQLMFNMALDKKNDGPKKKIVLLSAIGTPYETRASVVANEDIRVVLA 389 (389)
T ss_dssp TCCCSTTCHHHHHHTTTCCCCHHHHHHHHHTCCE-------ECCEEETTEESSSSCEECCHHHHHHHCC
T ss_pred CCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEECCCCCCHHHHHHHHC
T ss_conf 999654344200013434599999999986378857997899967457767663277599899999739
|
| >d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: Lesion bypass DNA polymerase (Y-family), catalytic domain domain: DNA polymerase eta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29332.42 Aligned_cols=1 Identities=0% Similarity=1.832 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~vI~hiDmD~FyAsvE~~~~p~l~~~Pv~V~q~~~via~sYeAR~~GVk~gm~~~eA 80 (389)
T d1jiha2 1 MSKFTWKELIQLGSPSKAYESSLACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQWNSIIAVSYAARKYGISRMDTIQEA 80 (389)
T ss_dssp CCSSBHHHHHGGGCTTTGGGSTTCCEEEEECTTHHHHHHHHHTTCCTTSCEEEEETTEEEEECHHHHTTTCCTTSCHHHH
T ss_pred CCCCCHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCEEEEECCEEEEECHHHHHHCCCCCCCHHHH
T ss_conf 98413645877279752236877679997365089989967563526997799008869998999997199878929999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~k~CP~li~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~Yr~~S~~v~~il~~~~~~vE~~SIDEaflD 160 (389)
T d1jiha2 81 LKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWVQDPAKQISVEDHKVSLEPYRRESRKALKIFKSACDLVERASIDEVFLD 160 (389)
T ss_dssp HHHCTTCEEEECCEEETTCSSEECCTTCSTTCSCTTSCCCSSSEEECCHHHHHHHHHHHHHHHHHCSCEEEEETTEEEEE
T ss_pred HHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEE
T ss_conf 98697636852121234444333344320001331001465326898899999999999999986888057416637897
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 lT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~ 240 (389)
T d1jiha2 161 LGRICFNMLMFDNEYELTGDLKLKDALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGDVFNPEGRDLITDWDDVILAL 240 (389)
T ss_dssp CHHHHHHHHHHCCSCBSSSSCBHHHHTHHHHHHHHHCCSCTTSBCCCCCGGGGGCCCCSEECCTTCCCSCCSHHHHHHHH
T ss_pred CCHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 50023220355431000122112332212345433332233234456642111222244433433344444356654028
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 g~~ia~~IR~~I~~etGlt~S~GIa~NK~LAKlAs~~~KPngqtvl~~~~v~~fl~~~~lpi~ki~GIG~k~~kkL~~~l 320 (389)
T d1jiha2 241 GSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKFEITSFWTLGGVLGKELIDVL 320 (389)
T ss_dssp HHHHHHHHHHHHHHHHCCCCEEEEESSHHHHHHHHTTTCSSCEEECCGGGHHHHHTSSSCCGGGSGGGSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999999999869984302455289999988744988558667899999997267872020787889999999984
Q ss_pred --------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 gi~t~~di~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~f~l~Rg~~~~pv~~r 389 (389)
T d1jiha2 321 DLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSR 389 (389)
T ss_dssp TCCSSSHHHHHHHHSCSCHHHHHHHHHHHHTSTTCCTTTCSSCTTCHHHHHHHHHHHTTTCCCCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 897613399987653688999855000655541068776555753244248888644147638888889
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=29331.77 Aligned_cols=1 Identities=0% Similarity=0.702 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
|
T Consensus 1 ~~~r~~~~~~~~i~~l~~~a~~~~~~g~~vi~l~~G~p~~~~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~ 80 (389)
T d2gb3a1 1 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRR 80 (389)
T ss_dssp CCHHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCCCSCCCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 97456348987788899999999976998888989989999889999999850777778899868999999999998886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~g~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (389)
T d2gb3a1 81 QRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERT 160 (389)
T ss_dssp SCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTE
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 39876552699625543221222112235798688707987433432113686321232222355420245554215674
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~ 240 (389)
T d2gb3a1 161 KGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGC 240 (389)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEE
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 07984798766443210899999984234499999994131002323322222222223443345565334576563132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~~l 320 (389)
T d2gb3a1 241 LITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAEL 320 (389)
T ss_dssp EECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEEC
T ss_pred EECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEC
T ss_conf 51100268998766420122223222222222322320002232333321002344445430463236999558999958
Q ss_pred --------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 p~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~~~~~~l~~a~~~L~~~lk~f~~ 389 (389)
T d2gb3a1 321 PVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFCS 389 (389)
T ss_dssp SSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999986006329789994750146888889989999728999999999999999999619
|
| >d2o3ia1 e.73.1.1 (A:2-390) Hypothetical protein CV3147 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: CV3147-like superfamily: CV3147-like family: CV3147-like domain: Hypothetical protein CV3147 species: Chromobacterium violaceum [TaxId: 536]
Probab=100.00 E-value=0 Score=29328.33 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~Ls~~Dl~~i~~Ga~iLGtGGGGdp~~~~~l~~~~~~~~~~~~~~V~li~~del~D~~~V~v~~mGAPtv~~E~~~~~ 80 (389)
T d2o3ia1 1 AFELSPSDLEPLLQGACFFGSGGGGTMISARHLAANFRKGDYYPTDKVRVVDVDEATDGDCVMVAYMGAPDAINQVQWPN 80 (389)
T ss_dssp CEEECGGGHHHHHHHHHHTTTTCSCCHHHHHHHHTTCSBTTTBSCSCEEEECGGGCCSSEEEEEEEEECHHHHTTCSSCH
T ss_pred CCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEECHHHCCCCCEEEEEEEECCHHHHEECCCC
T ss_conf 93757999999851459997278876688999999986642257996699535336888899997640787883405799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~e~~~a~~~l~~~~g~~~~av~~~EiGG~Ns~~pl~~AA~~glPvVDaD~mGRAfPelqm~t~~i~G~~~~P~~lad~ 160 (389)
T d2o3ia1 81 GPVEAALAARQRLESQGRKLAYVVAPESGALGFVVASLVAAKLGLAVVDADGAGRAVPSLPMLTYAAAGVPPTPAFLAGE 160 (389)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHTCEEESBCSSSSCCSSGGGSHHHHTTCCCCSEEEECS
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCHHHEEHEECCCCCCCEEEECC
T ss_conf 75799999999999719975799951668722789999999719988747875456774322000105899887699728
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~Gn~~i~~~~~~~~~~~~~e~~~~~~e~~~R~~~~~~~~Gg~~~~a~~pm~~~~~~~~~~I~gTlS~A~~iGrav~~ar~ 240 (389)
T d2o3ia1 161 SGLCVELGVRMPPPDGQRREDISTVVEQMLRPILTNPQFGQFGGLAMWMMSPAQLGGALPVRGTLSRALKLGRALQDGKV 240 (389)
T ss_dssp SSCEEEEEEECCCCC---CCCHHHHHHHHHHHHTTSTTTCSEEEEEEEEECHHHHHHHCCSBSHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99779984023555412577899999998877766875174347862659989983201168559999999899998664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~l~~~~~~~g~~~l~~Gki~~v~r~~~~Gf~~G~v~ieg~~~~~~i~fqNE~L~a~~~g~~~~la~vPDLI~ 320 (389)
T d2o3ia1 241 KTAEAMLDFLRRELDIKGKLLFGPATLASPEVSTAGGFDLGKVVLEDGERRCTVLYQNESLLAWDSALSHPLATAPDAIS 320 (389)
T ss_dssp CSHHHHHHHHHHHHCCCCEEEEEEEEECCC----------CEEEEESSSCEEEEEESSSEEEEEETTCSSCSEETTSEEE
T ss_pred CCCCHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEECCCEEEEEEEEECEEEEEECCCCCEEEECCCEEE
T ss_conf 24327999998732667868999689997799705871789999907985899999814189998798978997796799
Q ss_pred --------------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~lD~~tG~pitte~~~~~~~~g~~~~ryG~~V~Vi~~pa~~~wrt~~~l~~~GP~~~~fGy~~~y~P~e 389 (389)
T d2o3ia1 321 YFVEGEGQHVFSNGDLSGNDHGLDPSVRGRKAAVIALPAAAPLSEGLILQSFADELAQLGYLGPYAPVD 389 (389)
T ss_dssp EEECSSSCCCCCHHHHBCSSSSBCTTTTTSEEEEEEECCCGGGSSHHHHHHHHHHHHHTTCCSCCCCCC
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCHHHHHHCCCHHHHCCCCCCCCCCC
T ss_conf 986688864423332345556654234798899999609827486333655095055359997765288
|
| >d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Influenza neuraminidase species: Influenza A virus, different strains [TaxId: 11320]
Probab=100.00 E-value=0 Score=29264.08 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~n~~kplC~i~G~a~~sKDN~IRig~~g~i~V~REPyVSC~p~eC~~FaL~QGa~l~~kHSNgTi~DRsp~RtL~s~ 80 (388)
T d1f8ea_ 1 RDFNNLTKGLCTINSWHIYGKDNAVRIGEDSDVLVTREPYVSCDPDECRFYALSQGTTIRGKHSNGTIHDRSQYRALISW 80 (388)
T ss_dssp CCCCCCCCEECCCSEEEEEEECCHHHHHTTSCBEEEEEEEEEEETTEEEEEEEEEEEESSSGGGTTTTCSCCTTCEEEEE
T ss_pred CCHHHCCCCCCCCCCEEEEECCCCEEECCCCCEEEEECCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHEEEEC
T ss_conf 94011376666433146661477168638987899826512028202034762043101786668841566510113441
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~lG~~p~~~ns~f~~vaWSsssCHDGk~Wl~i~vtG~D~nA~A~~~Y~g~~tdti~SW~~nILRTQESeCvCinG~C~vv 160 (388)
T d1f8ea_ 81 PLSSPPTVYNSRVECIGWSSTSCHDGKTRMSICISGPNNNASAVIWYNRRPVTEINTWARNILRTQESECVCHNGVCPVV 160 (388)
T ss_dssp ETTSCCBTTTCEEEEESSEEEEEECSSSEEEEEEESCTTSCEEEEEETTEEEEEEECSSSSCCBCCSSCCCCBTTEEEEE
T ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCEEEEHHHHHHHHHCCCCCCCEEEECCEEEEE
T ss_conf 26899966774589998643444689724899878798883799998999963265444311100322048989988999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 mTDG~A~~~A~~ri~~i~eGkIik~~~l~g~~~HiEECSCYp~~~~V~CvCRDNW~GsNRP~v~in~~~~~~~~~YvCsg 240 (388)
T d1f8ea_ 161 FTDGSATGPAETRIYYFKEGKILKWEPLAGTAKHIEECSCYGERAEITCTCRDNWQGSNRPVIRIDPVAMTHTSQYICSP 240 (388)
T ss_dssp EEEECSSSCEEEEEEEEETTEEEEEEECCSSCCCCEEEEEEEETTEEEEEEECCSSCSSCEEEEEETTTTEEEEEECCCS
T ss_pred EECCCCCCCCCEEEEEEECCEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEECC
T ss_conf 92688778631589998566388876169886731763422899946999706888888975995455431443278646
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~DTPR~~D~s~g~C~~p~~~~g~~GVKGf~f~~G~~vW~GRTiS~~sRsGfE~~~v~~gwt~~~s~~~~~q~iv~n~n 320 (388)
T d1f8ea_ 241 VLTDNPRPNDPTVGKCNDPYPGNNNNGVKGFSYLDGVNTWLGRTISIASRSGYEMLKVPNALTDDKSKPTQGQTIVLNTD 320 (388)
T ss_dssp SCCSSSCCCCCSSCCSSSCCCSCCSCCCCCCEECCTTSCEEEECSCSSSSEEEEEEECTTTTTCTTCCCSEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCCCCCCHHHHCCEEEEECCC
T ss_conf 44789998988866478987778888734314766897687664247667761699934875276603204228996587
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 wSGYSGsF~~~~~~~~C~~pCFyVElIRGrp~E~~v~WTSnSiv~fCG~~~~~g~~swpDGA~i~ff~ 388 (388)
T d1f8ea_ 321 WSGYSGSFMDYWAEGECYRACFYVELIRGRPKEDKVWWTSNSIVSMCSSTEFLGQWDWPDGAKIEYFL 388 (388)
T ss_dssp ECCCEEEECCTTCSSSEECCEEEEEEEEETTTCTTSSCEEEEEEEEEEESSCCCCCCCCCCCCGGGGC
T ss_pred CCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 77561771234348873011489999618876563467407779993679986786689865465559
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29261.49 Aligned_cols=1 Identities=0% Similarity=-1.290 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 gll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 80 (388)
T d1w3ba_ 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER 80 (388)
T ss_dssp CCCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 96999999998699999999999999868998999999999999869999999999999985999899999999996420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 00222222222121122222222222222222222222222221112222222222222222222110001356788887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 240 (388)
T d1w3ba_ 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 40258610689986363010247199999999999984946499999971552200529999999998577755479999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999999878999999999999984999899999999999974879999999986540487300101579999998789
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999999986889899999999999985999999999999997099989999999999998589
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29256.87 Aligned_cols=1 Identities=100% Similarity=0.437 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~pGP~~~~~~Vl~am~~~~i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT 80 (388)
T d1h0ca_ 1 HKLLVTPPKALLKPLSIPNQLLLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGH 80 (388)
T ss_dssp CCCSSCCCGGGGSCCCCCCCEECSSSCCCCCHHHHHHHTCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHH
T ss_pred CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHH
T ss_conf 98767997676555688767212499988999999975768888789899999999999999996899983899869489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i 160 (388)
T d1h0ca_ 81 CALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVL 160 (388)
T ss_dssp HHHHHHHHHHCCSSCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEE
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEECCCCC
T ss_conf 99999999861268740231134301000012211111133333587655216899987616971137874200014445
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
T d1h0ca_ 161 QPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLD 240 (388)
T ss_dssp CCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTC
T ss_pred CCHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC
T ss_conf 67999988764025441001112344332112345651220333321468972677750078887544304666432212
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~ 320 (388)
T d1h0ca_ 241 IKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTT 320 (388)
T ss_dssp HHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEE
T ss_pred CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHCCCEEEE
T ss_conf 00023443210233443556657999988878999997166531000121047778777633753126887773880899
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~p~~~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k~~ 388 (388)
T d1h0ca_ 321 VAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKKK 388 (388)
T ss_dssp EECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCCC-
T ss_pred EECCCCCCHHHHHHHHHHCCCEEEECCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98899989999999998519989957852204998998477777999999999999999999862569
|
| >d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Vacuolar ATP synthase subunit C superfamily: Vacuolar ATP synthase subunit C family: Vacuolar ATP synthase subunit C domain: Vacuolar ATP synthase subunit C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29261.32 Aligned_cols=1 Identities=100% Similarity=0.636 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~~y~lvSlP~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~f~IP~lKvGTLDsLv~lsDeL~KlD~~ve~vv~Kv~~ 80 (388)
T d1u7la_ 1 LYTANDFILISLPQNAQPVTAPGSKTDSWFNETLIGGRAFVSDFKIPEFKIGSLDTLIVESEELSKVDNQIGASIGKIIE 80 (388)
T ss_dssp CCCCCEEEEEEEETTCCCTTSTTCCHHHHHHHTGGGGTSEEEECCCCCCBCSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97565069998778788889850468999985225887236304798777135999998788888788899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~l~~~~~~~~~~l~v~~~~~~~yl~~F~Wd~aKyp~~~~l~elv~~i~~~~~~id~dlk~k~~~Yn~~K~~l~~~~R 160 (388)
T d1u7la_ 81 ILQGLNETSTNAYRTLPINNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAER 160 (388)
T ss_dssp HHHHTTSSCSSSCCSCCBTTBCHHHHHHTCCCCTTTSCTTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHEEEECCCCHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987236110321676878138987564460444288889899999999999998889999999999999999998740
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 K~~G~L~~r~L~diV~~ed~V~dSEyLtTllVvVPk~~~~dwl~~YEtL~~~VVPrSs~~i~~D~e~~L~~VtlFkk~~~ 240 (388)
T d1u7la_ 161 KKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFKKNVQ 240 (388)
T ss_dssp HTCSCTTTSCCTTTCCGGGSCCSCSSEEEEEEEEEGGGHHHHHHHGGGSSTTBCTTCCEEEEECSSEEEEEEEEEGGGHH
T ss_pred CCCCCEEECCHHHHCCHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHCEECCCEEEEEEEEEHHHHH
T ss_conf 04785262427752798872553314058999961531788999986325762687155302568805899999723199
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 eF~~~aRE~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~~wiHiKalRvFVESVLRYGLP~~ 320 (388)
T d1u7la_ 241 EFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPH 320 (388)
T ss_dssp HHHHHHHHTTCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999997594304266797899999999999999999999999999999999999999998568766433453589834
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 F~~~li~p~~k~~kklr~~L~~~f~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ey~PyV~~~i~l 388 (388)
T d1u7la_ 321 FNIKIIAVPPKNLSKCKSELIDAFGFLGGNAFMKDKKGKINKQDTSLHQYASLVDTEYEPFVMYIINL 388 (388)
T ss_dssp EEEEEEEECTTCHHHHHHHHHHHHGGGGCTTCC------------------------CCSSEEEEEEC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 13899950872589999999998634265300234446667776543212335677515549998349
|
| >d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Chorismate synthase, AroC superfamily: Chorismate synthase, AroC family: Chorismate synthase, AroC domain: Chorismate synthase, AroC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=0 Score=29258.78 Aligned_cols=1 Identities=0% Similarity=0.237 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 lR~tT~GESHG~aig~vIdG~PaGl~i~~~~I~~~L~RR~pG~~~~~t~R~E~D~v~ilSGv~~G~TtG~PI~~~I~N~D 80 (388)
T d1qxoa_ 1 MRYLTAGESHGPRLTAIIEGIPAGLPLTAEDINEDLRRRQGGYGRGGRMKIENDQVVFTSGVRHGKTTGAPITMDVINKD 80 (388)
T ss_dssp CEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHHHHCSTTCCTHHHHCCCCCEEEESEETTEECSSCEEEEEECGG
T ss_pred CCEEECCCCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCEEEEEECCC
T ss_conf 95541313688834899816186887499999999955798999997668999827994644389806774499998787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~PRPGHAD~~~~~Kyg~~d~r~gggRsSaReTa~rVAaGaiAk~~L~~~gI~v~s~ 160 (388)
T d1qxoa_ 81 HQKWLDIMSAEDIEDRLKSKRKITHPRPGHADLVGGIKYRFDDLRNSLERSSARETTMRVAVGAVAKRLLAELDMEIANH 160 (388)
T ss_dssp GGGGTTTTCSSCCCGGGTTTTCCCSCCTTSSHHHHHHHHTCSSTHHHHHHHSGGGHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 77754444411123455432012457888435789987478656687751688999999999999999999819735235
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 v~~IG~i~~~~~~~~~~~~~~~~~~~~~~~c~d~~~~~~m~~~I~~ar~~gDSlGG~ve~~~~gvP~GLG~pv~~d~kLd 240 (388)
T d1qxoa_ 161 VVVFGGKEIDVPENLTVAEIKQRAAQSEVSIVNQEREQEIKDYIDQIKRDGDTIGGVVETVVGGVPVGLGSYVQWDRKLD 240 (388)
T ss_dssp EEEETTEECCCCSSCCHHHHHHHHHTSTTCCSCGGGHHHHHHHHHHHHHTTCCBCEEEEEEEESCCTTCSCSSSGGGCHH
T ss_pred EEEECCEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 68741320267443687888764311556467868855668889999853887676399999717833368866776541
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 a~La~AlmSIpAvKgvEfG~GF~~a~~~GSe~nD~~~~~~~~~~~~~tN~~GGi~GGISnG~pI~~rva~KPtsSI~~~q 320 (388)
T d1qxoa_ 241 ARLAQAVVSINAFKGVEFGLGFEAGYRKGSQVMDEILWSKEDGYTRRTNNLGGFEGGMTNGQPIVVRGVMKPIPTLYKPL 320 (388)
T ss_dssp HHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTSCCEEEETTTEEEESCCTTTTEETTEECSSCEEEEEEECCCSCCSSCE
T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 89998774243113453056488897421455650100466784113688762016777788769999957865567755
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~Tvd~~~~e~~~~~~gRhDpCivpRAvpV~EAm~alvLad~~L~k~g~d~l~~~~~~~~~y~~~~~~~ 388 (388)
T d1qxoa_ 321 MSVDIETHEPYKATVERSDPTALPAAGMVMEAVVATVLAQEILEKFSSDNLEELKEAVAKHRDYTKNY 388 (388)
T ss_dssp EEECTTTCCEEEECCSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHSCCSBHHHHHHHHHHHHHHHHTC
T ss_pred CCEECCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 53566898067246898897075532899999999999999999857775999999999999998519
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=100.00 E-value=0 Score=29257.31 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~k~~~~~LtfDDVlLvP~~st~~~~~vdl~~~~t~~~~l~iPIisA~MDtVt~~~mAi~ma~~GGlgVihr~~~ie~q~~ 80 (388)
T d1eepa_ 1 NKITKEALTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQRK 80 (388)
T ss_dssp CCSCCCCCCGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTTTCSHHHHHHHHHHTSEEEECSSSCHHHHHH
T ss_pred CCCCCCCCCCCCEEEECCCCCCCHHHCEEEEEEECCEECCCCEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHH
T ss_conf 96333578841079827988777778354489538776699877169888788999999998798899908999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~v~~Vk~~~~~~~~~~~~d~~~~~~~~~t~~~~~~~~~a~~d~~~~~~~p~~~~d~~~~l~vgaAvg~~~~~~~ra~~L~ 160 (388)
T d1eepa_ 81 EIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELV 160 (388)
T ss_dssp HHHHHHTCC--------------------------------------CCTTCCBCTTSCBCCEEEECSCTTHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHH
T ss_conf 99986230044520036763310223300554422547877188876506777655224101220589789999999877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~aG~D~ivID~AhG~s~~~~~~i~~ik~~~~~v~vIaGNV~T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~pq~ 240 (388)
T d1eepa_ 161 KAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQI 240 (388)
T ss_dssp HTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHH
T ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHH
T ss_conf 51254543103663167799999999987899866500126799999998629775543122232345654236674238
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg~~~~~~g~~~k~~~gm~S~~a~~~g~ 320 (388)
T d1eepa_ 241 TAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGS 320 (388)
T ss_dssp HHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTSSSCEEEETTEEEEC--------------
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEEECCCEEECCHHHHCCCCCCCEEEEECCCEEECCCCCCCHHHHHCCC
T ss_conf 89999999861577157853666737730136785155034053654136788418985892740155665487775445
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~~~~l~gglrs~m~y~Ga~~l~e~~~~~~fv~vt~~ 388 (388)
T d1eepa_ 321 KSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKINSKFVKISHS 388 (388)
T ss_dssp ----------------------CEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHSCCEEECCCC
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEEECCC
T ss_conf 21013334664422346704987078887899999999999997421586629998539889997899
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=100.00 E-value=0 Score=29257.03 Aligned_cols=1 Identities=0% Similarity=-1.789 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~PGP~~~~~~V~~Am~~~~~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a 80 (388)
T d2ch1a1 1 KFTPPPASLRNPLIIPEKIMMGPGPSNCSKRVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAG 80 (388)
T ss_dssp CCCCCCGGGSSCCCCCCCBCCSSSSCCCCHHHHHHTTSCCCCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHH
T ss_pred CCCCCCHHHCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHH
T ss_conf 98999634437668885540108998889999997476778878899999999999999999689997199976848999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~ea~~~~l~~~~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~ 160 (388)
T d2ch1a1 81 MEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP 160 (388)
T ss_dssp HHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCC
T ss_conf 99999974211133333222310000033443311332123565445521012344430478633565302222322211
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
T d2ch1a1 161 LEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLL 240 (388)
T ss_dssp CTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHH
T ss_pred HHHHCCHHCCCCCEEEEEEEECCCCCCCCHHCCCCEEEEECCCCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 12200000146540366532102346621230576399982655457887289972427788754202575531025603
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~ 320 (388)
T d2ch1a1 241 LLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIM 320 (388)
T ss_dssp HHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEE
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEEE
T ss_conf 55543023320025576532778999999999998766677898887777877766553022323689788098489998
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~p~g~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~~~~~~ 388 (388)
T d2ch1a1 321 IPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHPDYIF 388 (388)
T ss_dssp CCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999998513998996788655698899717717899999999999999999961986589
|
| >d2dcfa1 e.3.1.1 (A:5-392) 6-aminohexanoate-dimer hydrolase NylC {Flavobacterium sp. [TaxId: 239]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: 6-aminohexanoate-dimer hydrolase NylC species: Flavobacterium sp. [TaxId: 239]
Probab=100.00 E-value=0 Score=29256.23 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~t~~nw~~~~~~r~~f~~~~~~~pt~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~t~a 80 (388)
T d2dcfa1 1 STGQHPARYPGAAAGEPTLDSWQEPPHNRWAFAHLGEMVPSAAVSRRPVNAPGHALARLGAIAAQLPDLEQRLEQTYTDA 80 (388)
T ss_dssp CCCCCCCSSTTCCTTCSCTTTTTSTTHHHHHTTCGGGTSCCCCCCSCC----CCCEEECTTHHHHCTTHHHHHHHTTEEE
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCE
T ss_conf 99888455889523677847864886301205558774884342079888775333212444455433999987428847
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~lV~~~G~iv~E~y~~~~~~~t~~~~~SvtKs~ta~li~~lve~G~l~ldd~v~~ylPe~~~~~~~~iTi~~LL~mtsGl 160 (388)
T d2dcfa1 81 FLVLRGTEVVAEYYRAGFAPDDRHLLMAVSKSLCGTVVGALVDEGRIDPAQPVTEYVPELAGSVYDGPSVLQVLDMQISI 160 (388)
T ss_dssp EEEEETTEEEEEEECTTCCTTCCEECTTHHHHHHHHHHHHHHHTTSCCTTSBGGGTCGGGTTSTTSSCBHHHHHTTCBCC
T ss_pred EEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHCCCCC
T ss_conf 99998998999974699884320148999889999999999734854456752302454404543215677764233677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pg~~f~Y~~~~~~lLg~iie~~tG~~~~~~~~e~i~ 240 (388)
T d2dcfa1 161 DYNEDYVDPASEVQTHDRSAGWRTRRHGDPADTYEFLTTLRGDGSTGEFQYCSANTDVLAWIVERVTGLRYVEALSTYLW 240 (388)
T ss_dssp SCCCCSSCTTSHHHHHHHHHTSSCCCTTCCSSHHHHHHTCCCCSCBSSCCCCHHHHHHHHHHHHHHHCSCHHHHHHHHTG
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHCC
T ss_conf 64234355651355666653101001246188999874067679998789806789999999987517630222333204
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~PlGm~~~~~~~~~~~g~~~~~ggl~~tarDlarfg~l~l~~G~~~g~qils~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 320 (388)
T d2dcfa1 241 AKLDADRDATITVDTTGFGFANGGVSCTARDLARVGRMMLDGGVAPGGRVVSEDWVRRVLAGGSHEAMTDKGFTNTFPDG 320 (388)
T ss_dssp GGTTCSSCCEECBCTTCCBCTTTCEEECHHHHHHHHHHHHTTTEETTEECSCHHHHHHHHHCCCTTTCCCHHHHHHCTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 84212222222334567632100323132214577788874885488605649999998568972001245656678999
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~Yg~~ww~~~~~~~~~~~~G~~GQ~i~vdP~~~lvIV~ls~~~~~~~~~~~~~~~~i~~~i~~~l~av 388 (388)
T d2dcfa1 321 SYTRQWWCTGNERGNVSGIGIHGQNLWLDPLTDSVIVKLSSWPDPDTEHWHRLQNGILLDVSRALDAV 388 (388)
T ss_dssp EEETTEEECCCTTCCEEEEETTTEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCCEEECCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 97864551699997089887789689999069989999599999985468999999999999997229
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=29252.97 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~s~~~~~~~~s~ir~~~~~~~~~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~ 80 (388)
T d1gdea_ 1 ALSDRLELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNG 80 (388)
T ss_dssp CHHHHHHHSCCCHHHHHHHHHHHCTTCEECCCCSCCSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 95156410894689999999858998199999889998789999999999855764789985779999999999875133
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 160 (388)
T d1gdea_ 81 IEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKT 160 (388)
T ss_dssp CCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTE
T ss_pred CCCCCHHEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHCCCCC
T ss_conf 56787020431367535889999986589798998899848899999985998999514556687879999997375687
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR 240 (388)
T d1gdea_ 161 RALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWR 240 (388)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGC
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCHHHCCCCCCEEEEEECCHHHCCCCCCC
T ss_conf 59998999698888689999999999999869999997088655333677777656057788089995772433376361
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~fl 320 (388)
T d1gdea_ 241 LGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYI 320 (388)
T ss_dssp CEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTEE
T ss_pred EEEEEEECCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 78997302102343211232223333220045789986032036899999999875334566653212566589833799
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~~~e~l~~al~rL~~~l~e~k~~ 388 (388)
T d1gdea_ 321 FPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKERKLV 388 (388)
T ss_dssp CCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEECCCCCCCHHHHHHHHHHHCCEEEEECHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99888879999999999998599999810451989999799996499999999999999999961799
|
| >d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: phi29 DNA polymerase species: Bacteriophage phi-29 [TaxId: 10756]
Probab=100.00 E-value=0 Score=29255.80 Aligned_cols=1 Identities=100% Similarity=1.998 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~t~~s~~~~~fk~~~~~~~~~~~~p~~~~~~~~~ir~~y~GG~~~~~~~~~~~~~~~i~~yD~nSLYPs~M~~~~~p~g~ 80 (388)
T d2py5a2 1 MTAGSDSLKGFKDIITTKKFKKVFPTLSLGLDKEVRYAYRGGFTWLNDRFKEKEIGEGMVFDVNSLYPAQMYSRLLPYGE 80 (388)
T ss_dssp SSHHHHHHHHHHHHHCHHHHHHHSCCCCHHHHHHHHTTCCCCCEEECGGGBTCEECSEEEEEETTHHHHHHHHSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCC
T ss_conf 96307899999999765146540888991477888971217623214544555668548986557239998337899776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d2py5a2 81 PIVFEGKYVWDEDYPLHIQHIRCEFELKEGYIPTIQIKRSRFYKGNEYLKSSGGEIADLWLSNVDLELMKEHYDLYNVEY 160 (388)
T ss_dssp EEEEESSCCCCTTSCEEEEEEEEEEEECTTCCCCCCC-------CCSCCSBCTTSCEEEEEEHHHHHHHHHHEEEEEEEE
T ss_pred CEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECHHHHHHHHHCCCCEEEEE
T ss_conf 04653614666666770489999822765557766530344677865784668850567873899999995587258888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~f~~~~~~~k~~~~~~~~~kk~~~~~~q~~~KLl~NSlYGk~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
T d2py5a2 161 ISGLKFKATTGLFKDFIDKWTYIKTTSEGAIKQLAKLMLNSLYGKFASNPDVTGKVPYLKENGALGFRLGEEETKDPVYT 240 (388)
T ss_dssp EEEEEEEEESCTTHHHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHTCCSBCCBEEEEECTTSSEEEEECCCCBCCCCCH
T ss_pred EEEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHEECCCCCCCCCEEECCCCCEEHHHHHCCCCCCCCCH
T ss_conf 76677212357899999842588774017799999974542441013335655434641443200121210001464431
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~ia~~ita~~r~~~~~~~~~~~~~v~Y~DTDSi~~~~~~~~~~~~~~~~~~~lg~~~~E~~~~~~~~~~~K~Y~~~~~~~ 320 (388)
T d2py5a2 241 PMGVFITAWARYTTITAAQACYDRIIYCDTDSIHLTGTEIPDVIKDIVDPKKLGYWAHESTFKRAKYLRQKTYIQDIYMK 320 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTEEEEETTEEEEESSSCCGGGGGGBCSSSTTSEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCCHHHHHHHHCHHHHCCCCCCCCCCHHHCCCCCHHHCEEECC
T ss_conf 48899998888889987641488379983636886577621567764245650546301010112116643201457424
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~v~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~d~~~~~~ 388 (388)
T d2py5a2 321 EVDGKLVEGSPDDYTDIKFSVKCAGMTDKIKKEVTFENFKVGFSRKMKPKPVQVPGGVVLVDDTFTIK 388 (388)
T ss_dssp EETTEEEECBTTBCSEEEEEEEETTCCHHHHTTCCTTTCSTTCEEEEEEEEEEETTEEEEEEEEEECC
T ss_pred CCCCCCCCCCCEEECCHHHHHHHCCCHHHHHHHHHHHHCHHHHEEECCEEEEECCCCCEECCCEEECC
T ss_conf 54332233442340152456455231699999987750502411656351177069826524402239
|
| >d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of family B DNA polymerases species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29252.69 Aligned_cols=1 Identities=0% Similarity=-0.593 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~g~~ltr~~~d~~~g~~i~~~~~t~~G~~~v~v~~q~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~V~~v 80 (388)
T d1q8ia1 1 AQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGL 80 (388)
T ss_dssp CEEEEEEEEEEECCTTCBEEEEEEEETTEEEEEECSCBCEEEEEEGGGHHHHHHHTTTCCSEEEEEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEEEEEECCCEEEEEEEECCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHCCCCEECCEEEECCCCCEEEEE
T ss_conf 98623630024771897799999985998879998799679999854567999998547781664322055789779999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 y~~~~~~~r~l~~~l~~~g~~vyEaDI~~~~RfliD~~i~~~~w~~~~~~~~~~~~~~~~~~~~~~P~lkilsfDIE~~~ 160 (388)
T d1q8ia1 81 YCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTR 160 (388)
T ss_dssp EESCHHHHHHHHHHHHHTTCCCBSTTCCHHHHHHHHTTCSSEEEEEEEEETTEEEEEEEEECTTCCCCCCEEEEEEEECT
T ss_pred EECCHHHHHHHHHHHHHCCCEEEECCCCHHHEEEEECCCCCCEEEEEECCCCEEECCEEEECCCCCCCCEEEEEEEEECC
T ss_conf 92899999999998862698589768996884899787888858998624661541067566788997359999999747
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~si~l~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~E~~LL~~F~~~i~~~dPDii~GyNi~~FDlpyL~~Ra~~~~ 240 (388)
T d1q8ia1 161 HGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYR 240 (388)
T ss_dssp TSCEEEEEEEETTEEEEEEESSCCSCCTTCSSEEEEESSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 88667898548998889999567777787855999969999999999999987199889960788878899999999858
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 i~~~lgr~~~~~~~~~~~~~~~~~~~~i~Gr~~lD~~~~~k~~~~~~~sy~L~~Va~~~Lg~~K~~~~~~~~~~~~~~~~ 320 (388)
T d1q8ia1 241 LPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRF 320 (388)
T ss_dssp CCCCCSSSSCCCEEEEECSSSCEEEEEBTTBEEEEHHHHHHHSCCCCSCCCHHHHHHTTC------------CTHHHHHH
T ss_pred CCCHHHHCCCCCEEEECCCCCCCEEEECCEEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
T ss_conf 87404424772205875655651133020499860268897563043546776755410024455557255589987157
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------~ 467 (1064)
=
T Consensus 321 ~~d~~~l~~Y~~~D~~Lv~~L~~k~~~i~~~~ela~l~g~pl~~~g~s~~~~~~lll~~~~r~g~v~P 388 (388)
T d1q8ia1 321 AEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAP 388 (388)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCSCTTTTCCHHHHHHHHHHHHHHHTTBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCEECC
T ss_conf 12489999998999999999999877899999999884979899788499999999999997799587
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29251.36 Aligned_cols=1 Identities=0% Similarity=-1.324 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~p~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg 80 (388)
T d1erja_ 1 HYLVPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATG 80 (388)
T ss_dssp CCCCCTTSSSCTTCCCCHHHHCCCSSSSCTTSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEE
T ss_pred CCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEE
T ss_conf 95687113244147999705765843475322468897089868877762054107607999968999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~ 160 (388)
T d1erja_ 81 CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ 160 (388)
T ss_dssp CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ECCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 49948999813640576631665443244321110146778988999988999801213444111121111111111111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 240 (388)
T d1erja_ 161 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240 (388)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCC
T ss_conf 11111111011111111112221015654101111110000124544211236887875899738981999634557300
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 320 (388)
T d1erja_ 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 320 (388)
T ss_dssp EEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG
T ss_pred EEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCC
T ss_conf 01024433345778987899997999999999789928987515776432101344420011012455327899988999
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k~ 388 (388)
T d1erja_ 321 EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388 (388)
T ss_dssp CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEEC
T ss_conf 99999969897999999999699999688997899998467425899999999918997999762149
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=0 Score=29251.03 Aligned_cols=1 Identities=0% Similarity=0.237 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 m~~~~~~~~~~~s~~~~i~~~a~~~~~~g~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~ 80 (388)
T d1j32a_ 1 MKLAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKL 80 (388)
T ss_dssp CCCCHHHHTSCCCSSTTTHHHHHHHHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 94523745399589999999999998779986899997899999899999999998558877899988999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~ 160 (388)
T d1j32a_ 81 QRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAI 160 (388)
T ss_dssp HHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHC
T ss_pred HHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHC
T ss_conf 87316577885599868789999999999819989899928981879999998568599983153336678999999727
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~ 240 (388)
T d1j32a_ 161 TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA 240 (388)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTT
T ss_pred CCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHCCCCCCCEEEECCCHHHHH
T ss_conf 77874999889999877403535554432011237867972056531034677887888948522156057037705413
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~g 320 (388)
T d1j32a_ 241 MTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDG 320 (388)
T ss_dssp CTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCB
T ss_pred CCHHHEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCC
T ss_conf 60657599998899999998766521245668999887632445099999999999999999999998479978668993
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 g~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~~~~e~l~~al~rl~~~l~~l~ 388 (388)
T d1j32a_ 321 AFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHGIL 388 (388)
T ss_dssp TTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf 68999988887999999999999869999981643599996999983899999999999999999859
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=29249.88 Aligned_cols=1 Identities=0% Similarity=-0.593 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~yPIVLvHGl~Gf~~~~l~~~~YW~G~~~~I~~~L~~~G~~V~~~~V~p~~S~~~RA~eL~~~I~~~~~d~G~~ 80 (388)
T d1ku0a_ 1 ASPRANDAPIVLLHGFTGWGREEMLGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSNWDRACEAYAQLVGGTVDYGAA 80 (388)
T ss_dssp CCCCCCCCCEEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEECCCCSSBCHHHHHHHHHHHHHCEEEECCHH
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98877999889818866677544676214678536468999858978998516986678999999999986345453376
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 hs~~~~~~~~~r~y~g~~~~~~~~~kVnLIgHS~GGld~Ryl~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~SvTT 160 (388)
T d1ku0a_ 81 HAAKHGHARFGRTYPGLLPELKRGGRVHIIAHSQGGQTARMLVSLLENGSQEEREYAKEHNVSLSPLFEGGHRFVLSVTT 160 (388)
T ss_dssp HHHHHTSCSEEEEECCSCGGGGGTCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCCCCEEEEEE
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 77652302237567220003366786358604554587999999702356432222212344333223567750688885
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 IsTPH~GS~~AD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~~es~~~~~~~~~~s~~~~~~~~a 240 (388)
T d1ku0a_ 161 IATPHDGTTLVNMVDFTDRFFDLQKAVLEAAAVASNAPYTSEIYDFKLDQWGLRREPGESFDHYFERLKRSPVWTSTDTA 240 (388)
T ss_dssp ESCCTTCCGGGGSTTHHHHHHHHHHHHHHHHHHHTTSCGGGCCCCCCBGGGTBCCCTTCCHHHHHHHHHTSHHHHSSSBH
T ss_pred CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHH
T ss_conf 05788986366542346652147889998876403542110002466653343457651099999988538876666401
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~dLtt~g~~~fN~~~~~~p~v~Y~S~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~NDGlV 320 (388)
T d1ku0a_ 241 RYDLSVPGAETLNRWVKASPNTYYLSFSTERTYRGALTGNYYPELGMNAFSAIVCAPFLGSYRNAALGIDSHWLGNDGIV 320 (388)
T ss_dssp HHHHSHHHHHHHHHHCCCCTTSEEEEEEECCEEECTTTCCEEECTTSCHHHHHHTHHHHTTCCBGGGTBCGGGCCBSSSS
T ss_pred HHHCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 03106599999733357899846777785143345777632224444454334557545553346532137679988865
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~v~S~~~g~~~~~~~~~~~~~~i~~G~W~~~~~~~~DHld~iG~~~~~~~~~~~~Y~~~a~~L~~l~~ 388 (388)
T d1ku0a_ 321 NTISMNGPKRGSNDRIVPYDGTLKKGVWNDMGTYNVDHLEVIGVDPNPSFNIRAFYLRLAEQLASLRP 388 (388)
T ss_dssp BGGGSSSCCTTCCCCEEECCSSCCBTSEEEEEEESCCTTGGGTSSCCTTSCHHHHHHHHHHHHHTCCC
T ss_pred CHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 88557587056777543345654455011036547649997388987877999999999999843999
|
| >d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: NagZ-like domain: Beta-D-glucan exohydrolase, N-terminal domain species: Barley (Hordeum vulgare) [TaxId: 4513]
Probab=100.00 E-value=0 Score=29254.16 Aligned_cols=1 Identities=0% Similarity=-1.290 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~y~d~~~~~e~Rv~dLl~~MTleEKigQl~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~lq~~ 80 (388)
T d1x38a1 1 DYVLYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKGATAKEWQDMVDGFQKA 80 (388)
T ss_dssp CCCGGGCTTSCHHHHHHHHHTTCCHHHHHHHTEEEEGGGCCHHHHHHTTCCEEEECTTCCSSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99876889999999999999877999999613064445688788985256616636876667898999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~giPlli~~D~e~G~~~~~~~t~~p~~~~~aat~d~~l~~~~g~~~g~E~ra~Gin~~~aPv~Dv~~~p~~gr~~ 160 (388)
T d1x38a1 81 CMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDPYLVKRIGEATALEVRATGIQYAFAPCIAVCRDPRWGRCY 160 (388)
T ss_dssp HHTSSSCCCCEEEECCSSSSTTSTTCCCCCCHHHHHHHTCHHHHHHHHHHHHHHHHHTTCCEECCCBCCCCSCTTSTTGG
T ss_pred HHHCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 87436898836633655675235664210033311025897999999998657887448763367763534564446556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 et~geDp~l~~~~~~~v~~~~g~~~~~~~~G~~~~~~~~gV~a~~KHFpG~g~~~~~~~~~~~~i~~~~l~~~~l~pf~~ 240 (388)
T d1x38a1 161 ESYSEDRRIVQSMTELIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMNIHMPAYKN 240 (388)
T ss_dssp GSSCSSHHHHHHGGGHHHHHHCCCCTTCCTTCCCCCSTTSCBCEEEEETTGGGCGGGCTTCEECCCHHHHHHHTSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 67667889999988653664110135430122223455674213314436886646740334530488899886145577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~i~~g~~~vM~s~~~~~g~pa~~s~~~l~~lLR~~~gF~G~VvSD~~~m~~~~~~~~~~~~~~~~~a~~ag~d~~~~~~~ 320 (388)
T d1x38a1 241 AMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTPAGSDYSYSVKASILAGLDMIMVPNK 320 (388)
T ss_dssp HHHTTCCEEEECSSEETTEEGGGCHHHHCCCCCTTSCCCSEEECCTTTTGGGSSSTTTTHHHHHHHHHHHTCCBEECCSC
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCHHHCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCC
T ss_conf 77605651223422357756657999999998730599752424221023312356775789999998517881347853
Q ss_pred -------------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~l~~av~~G~i~~~rid~sv~Ril~~k~~lGlfd~p~~~~~~~~~i~~~~h~~~a~~aA~~S 388 (388)
T d1x38a1 321 YQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADPAMAEQLGKQEHRDLAREAARKS 388 (388)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHTTTTTCCSCCGGGGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 89999999999985998999999999999999999489988877824544069999999999999639
|
| >d2ex0a1 c.87.1.9 (A:26-412) Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteurella multocida [TaxId: 747]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Sialyltransferase-like domain: Alpha-2,3/2,6-sialyltransferase/sialidase species: Pasteurella multocida [TaxId: 747]
Probab=100.00 E-value=0 Score=29182.05 Aligned_cols=1 Identities=0% Similarity=-1.390 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ktlEvYvD~AsLPslqqlm~iiq~ne~~~n~rli~w~R~~i~d~~l~~~~n~~F~~~~~n~~~~~~~~il~~~~~~~~in 80 (387)
T d2ex0a1 1 KTITLYLDPASLPALNQLMDFTQNNEDKTHPRIFGLSRFKIPDNIITQYQNIHFVELKDNRPTEALFTILDQYPGNIELN 80 (387)
T ss_dssp EEEEEEEESSSHHHHHHHHHHHHTTTCSSSCEEEEETTCCCCHHHHTTCSSEEECCEETTEECTHHHHHHTTCCSCEEEE
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 95699954355615999999986046778821577742368778987301021354457895299999997174433799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 i~~Nt~hS~d~~~~I~~~~~~~~~kv~i~~L~lYDDGSaEYV~l~~~k~~d~~~~~~~~~~~l~~~l~~Gt~~~~n~~~~ 160 (387)
T d2ex0a1 81 IHLNIAHSVQLIRPILAYRFKHLDRVSIQQLNLYDDGSMEYVDLEKEENKDISAEIKQAEKQLSHYLLTGKIKFDNPTIA 160 (387)
T ss_dssp EEEESTTHHHHHHHHHHHHHHTTTTEEEEEEEEECCSHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHCCCCCSCHHHH
T ss_pred EECCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 82121767776899999998740573048887752885888667764133034445678899988876387778985101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~Y~w~qlypt~YH~Lr~Dyf~~~~~L~~Lk~yL~~n~kqM~Wd~f~~fn~~Qk~lf~~~vgf~~E~~qq~~~q~~nFiFt 240 (387)
T d2ex0a1 161 RYVWQSAFPVKYHFLSTDYFEKAEFLQPLKEYLAENYQKMDWTAYQQLTPEQQAFYLTLVGFNDEVKQSLEVQQAKFIFT 240 (387)
T ss_dssp TTCGGGTSCEEEEESCHHHHHHCGGGHHHHHHHGGGEEECCSCHHHHSCHHHHHHHHHHHTCCHHHHHHTCCSSEEEEEE
T ss_pred EEEHHHCCCCHHHHEEHHHHHCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEE
T ss_conf 33044406743431105565057452479999840333467523200698888899987179899999997267875997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 GTts~~~~~e~~eyyaqqQInvin~a~ne~s~~~~g~~ydLfFKGHP~~~~~N~~I~~~~~~mi~IpakIpFEvLmMTg~ 320 (387)
T d2ex0a1 241 GTTTWEGNTDVREYYAQQQLNLLNHFTQAEGDLFIGDHYKIYFKGHPRGGEINDYILNNAKNITNIPANISFEVLMMTGL 320 (387)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHHHHSTTSTTCCCTTEEEEEECCTTCTHHHHHHHHHSSSCEECCTTSCHHHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEECCCCCCCHHHHHHHHCCHHHHCCCCCCCHHHHHHCCC
T ss_conf 13455676306778899989998732388996530675115772699865056899743355522644586299987278
Q ss_pred ------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 LPd~VGG~aSSlyFsiP~e~in~ivFtss~~~~s~~d~~~~~lvqVM~~L~iv~~~~V~fw~~~k~~ 387 (387)
T d2ex0a1 321 LPDKVGGVASSLYFSLPKEKISHIIFTSNKQVKSKEDALNNPYVKVMRRLGIIDESQVIFWDSLKQL 387 (387)
T ss_dssp CCSEEEEECCGGGGGSCGGGEEEEEECCCSSCSSHHHHHTSHHHHHHHHTTSCCGGGEEEGGGSCCC
T ss_pred CCHHHCCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHCCHHHHHHHHCCCCHHHEEEHHHHHCC
T ss_conf 8054336000258975533124899933764256565653839999999777766763676753039
|
| >d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Indolic compounds 2,3-dioxygenase-like superfamily: Indolic compounds 2,3-dioxygenase-like family: Indoleamine 2,3-dioxygenase-like domain: Hypothetical protein SO4414 species: Shewanella oneidensis [TaxId: 70863]
Probab=100.00 E-value=0 Score=29188.76 Aligned_cols=1 Identities=0% Similarity=0.902 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~d~wir~~f~~~n~~le~~y~~~~~~~~~~~~g~~~k~~l~~~g~~~i~~ll~egntdegf~~~f~llgnvg~ym 80 (387)
T d1zeea1 1 YNTEAFDEWIRSRFVELNSQLEQLYYQQTDRANVQEVGTELKHTLESEGRELVKALLDEGNTDEGFDSAFDLLGNVGLYM 80 (387)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHHHHHHSSSSSCCSSSCHHHHHHHHHHHHHHHHTTTTTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 96678889999999998799999997477732342000899999999889999999966785231799999975158999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~acrrh~i~ep~re~~~p~~eas~la~~~~as~gv~prf~~~hl~~hn~a~~~~~k~ft~l~de~~f~~~nt~~~~a~~~ 160 (387)
T d1zeea1 81 AACRRHEITEPTRETTSPLLEASALAMHIGASIGVTPRFATAHLTTHNRAHNGIYKRFTDLPDEKLFVDYNTKGILAYKR 160 (387)
T ss_dssp HHHHHTTSSCTTTCSSCSCHHHHHHHHHHHHHHTSCSSCCHHHHTTTCCEETTEECCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99874267785301368414437999988886399923566666315665410676305883578999875799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 a~~~l~~~~~lgi~hp~~~~ll~~~~~aLq~v~~sn~~l~~~ld~~~Ff~~vRPyykP~rVG~q~YrG~sAgqsa~I~vl 240 (387)
T d1zeea1 161 ASDALLKIQPLGISHPISHDLLRVTKQALQDVIESNQQLFNRLDTDRFFYCVRPYYKPYRVGSVVYRGANAGDFAGINVI 240 (387)
T ss_dssp HHHHHHTTTTTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHTGGGGCCEEETTEEECCCCTTCSHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHCCCEEECCCCHHHCCCHHHH
T ss_conf 99998764287899754899999999999999999999998439999899856312543237751079971201008999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 D~LLGvcha~dP~ysqfL~dmr~YMPP~hra~L~d~~r~PSl~d~vLsa~~~~~~~~y~~nL~aflevC~~hg~afR~hH 320 (387)
T d1zeea1 241 DLTLGLCFANEASYSQMLVDKFLYMMPEDQQILRECMRRPNLMDDFLQAKGCIHQDWYQENLKLFIEVCELHGQTAIQHH 320 (387)
T ss_dssp HHHTTSSCTTSHHHHHHHHTTGGGSCHHHHHHHHHHTTSCCHHHHHHHTGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99975563799409999999986179789999999863871689998635650038999999999999999999999999
Q ss_pred ------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 lQlV~KYI~~pS~~~~~q~~~~lTaSGPpl~vLLk~LkKLRD~R~AA~r~Di~tr~~d~~~l~~~l~ 387 (387)
T d1zeea1 321 NELVTKYIAEPSVSMEQQHLAKVTASGPPLHVLLASLERLRDRRAAVLRDDIRTRYYDLKKLKDSLR 387 (387)
T ss_dssp HHHTSCC------------------------CCHHHHHHHHHHHTTCCCSSSCCTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9999999972887434266566447899807899999998665542031137763999999998609
|
| >d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Influenza neuraminidase species: Influenza A virus, different strains [TaxId: 11320]
Probab=100.00 E-value=0 Score=29186.93 Aligned_cols=1 Identities=0% Similarity=-1.623 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 e~~n~t~plC~i~gfa~~sKDN~iR~g~~g~i~V~REPyVSC~p~eCr~FaL~QGa~l~~kHsNGTi~DRsp~R~L~s~~ 80 (387)
T d2aepa1 1 EYRNWSKPQCKITGFAPFSKDNSIRLSAGGDIWVTREPYVSCDPDKCYQFALGQGTTLNNRHSNDTVHDRTPYRTLLMNE 80 (387)
T ss_dssp CCCCCCSCBCCCSEEEEEEECCHHHHHTTSCCEEEEEEEEEECSSCEEEEEEEEEEESSSGGGTTCCCSCCTTCEEEEEE
T ss_pred CCCCCCCCCCCCCCEEEEECCCCEEECCCCCEEEEECCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHEEEECC
T ss_conf 95546676675343046763662575378866998266020284401357631321027866688426654101035513
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 lG~P~~~~s~~~~vaWSsssCHDGk~wl~I~vtG~D~nA~A~i~Y~g~~tdti~SW~~nILRTQESeCvCinG~C~vvmT 160 (387)
T d2aepa1 81 LGVPFHLGTKQVCIAWSSSSCHDGKAWLHVCVTGHDENATASFIYDGRLVDSIGSWSKKILRTQESECVCINGTCTVVMT 160 (387)
T ss_dssp TTCCCCTTCEEEEECSEEEEEECSSCEEEEEEESCTTSCEEEEEETTEEEEEEECSSSSCCBCCSSCCEEETTEEEEEEE
T ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEECCEEEEHHHHHHHHHCCCCCCCEEEECCEEEEEEE
T ss_conf 67997558657899863243468862489987768888089999899985326544430120042204898998899992
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 DG~A~~~A~~ri~~i~eGkIik~~~l~g~~~HiEECSCYp~~~~V~CvCRDNW~GsNRP~v~in~~~~~~~~~YvCsg~~ 240 (387)
T d2aepa1 161 DGSASGRADTKILFIEEGKIVHISPLSGSAQHVEECSCYPRYPGVRCVCRDNWKGSNRPIVDINVKDYSIVSSYVCSGLV 240 (387)
T ss_dssp EECSSSCEEEEEEEEETTEEEEEEECCSSCCCCEEEEEEEETTEEEEEEECCSSCSSCEEEEECTTTCCEEEEECCCSSC
T ss_pred CCCCCCCCEEEEEEEECCEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEECCHHCEEEEEEEECCCC
T ss_conf 68878853068999845638877606888673276330379982699970688877897499540022045305753644
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~DTpRp~D~s~~g~C~~p~~~~G~~GVKGf~F~~Gn~vW~GRTiS~~sRsGfE~~~v~~gwt~~~Sk~~~~~q~iV~n~n 320 (387)
T d2aepa1 241 GDTPRKNDSSSSSHCLNPNNEEGGHGVKGWAFDDGNDVWMGRTISEKFRSGYETFKVIEGWSKPNSKLQINRQVIVDRGN 320 (387)
T ss_dssp CCSSCCCTTTCCCCSSSCCCSSCSSCCCCCEEEETTEEEEEECSSSSSSEEEEEEEETTTTTSTTCCCEEEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCC
T ss_conf 78999888776655658888888886163368658973876532376677616999458875878634111479995588
Q ss_pred ------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 wSGYSGsF~~~~k~C~~pCF~VElIRGrp~E~~v~WTS~S~v~fCG~~~~~~~~swpDGA~i~~mp~ 387 (387)
T d2aepa1 321 RSGYSGIFSVEGKSCINRCFYVELIRGRKQETEVWWTSNSIVVFCGTSGTYGTGSWPDGADINLMPI 387 (387)
T ss_dssp ECCCEEEEEEECSSSEEEEEEEEEEEETTTCTTSSCEEEEEEEEEEESSCCCCCCCCCCCCGGGSCC
T ss_pred CCCCEEEEEECCCCCCCEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7752257996899842002899996078764505785187799936789867866899766676669
|
| >d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Bacillus licheniformis [TaxId: 1402]
Probab=100.00 E-value=0 Score=29176.93 Aligned_cols=1 Identities=0% Similarity=-2.554 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~f~~g~d~s~~~~~e~~g~~~~~~~g~~~d~~~~lk~~G~n~VRl~vw~~~~~~~~~~~~~g~~~l~~ 80 (387)
T d1ur4a_ 1 GLYVEKVSGLRKDFIKGVDVSSIIALEESGVAFYNESGKKQDIFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGNNDLEK 80 (387)
T ss_dssp CCCCCCCTTCCTTCEEEEECTTHHHHHHTTCCCBCTTSCBCCHHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTCCCHHH
T ss_pred CCCCCCCCCCCHHCEEEEECHHHHHHHHCCCEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHH
T ss_conf 95223578998100777861068999867977889999710599999983998799404447743335767776242999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~a~~~Gl~v~ldlH~sd~wadp~~q~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eigNE~~~~~ 160 (387)
T d1ur4a_ 81 AIQIGKRATANGMKLLADFHYSDFWADPAKQKAPKAWANLNFEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGL 160 (387)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSSSCCSSSCCCCCGGGTTCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCB
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf 99999999987997999867787776877777850321322047999999999999998863699812799724888674
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~ll~~~~~avr~~dp~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~d~ig~s~Y~~w~~~~~~~~~~l~~ 240 (387)
T d1ur4a_ 161 AGETDWAKMSQLFNAGSQAVRETDSNILVALHFTNPETSGRYAWIAETLHRHHVDYDVFASSYYPFWHGTLKNLTSVLTS 240 (387)
T ss_dssp TTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEEECCTTSTTHHHHHHHHHHHTTCCCSEEEEEECTTTSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHH
T ss_conf 67688999999999999998730887527872267653277889999998659876400202312347608999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 l~~~~~k~v~v~E~~~~~t~~~~d~~~~~~~~~~~~~~~p~s~~gQ~~~l~~l~~~~~~~~~~G~G~~YWep~w~~~~~~ 320 (387)
T d1ur4a_ 241 VADTYGKKVMVAETSYTYTAEDGDGHGNTAPKNGQTLNNPVTVQGQANAVRDVIQAVSDVGEAGIGVFYWEPAWIPVGPA 320 (387)
T ss_dssp HHHHHCCEEEEEEECCCSCSCCSSSSCCSSSCTTSCCCSCSSHHHHHHHHHHHHHHHHTTCTTEEEEEEECTTCCCSSCG
T ss_pred HHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
T ss_conf 99983996389985044347786444765787633356777899999999999999985478805999735763136777
Q ss_pred ------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~w~n~aLFd~~g~~l~~l~~f~~~~~~~~~ 387 (387)
T d1ur4a_ 321 HRLEKNKALWETYGSGWATSYAAEYDPEDAGKWFGGSAVDNQALFDFKGRPLPSLHVFQYVDTGTPF 387 (387)
T ss_dssp GGHHHHHHHHHHHCCSSBCGGGTTTCTTTHHHHCBSCSCGGGCSBCTTSCBCGGGGHHHHHHHCCC-
T ss_pred CCCCCCHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
T ss_conf 6543450345412642032213324641123456777411210335589867577877413478999
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29183.29 Aligned_cols=1 Identities=0% Similarity=-0.792 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~l~~~~~~l~~~a~~g~ld~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~ 80 (387)
T d1qvra2 1 TYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKR 80 (387)
T ss_dssp CCSHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCE
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCCE
T ss_conf 93779999798899998599998748089999999998248899976879999889999999999998089997886966
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~ 160 (387)
T d1qvra2 81 IVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTL 160 (387)
T ss_dssp EEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECH
T ss_pred EEEEEHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCH
T ss_conf 89955766652667413689999999998505899669872408888427778774138999999973788516663689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~ey~~~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~r~~PdKAidlld~a 240 (387)
T d1qvra2 161 DEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEA 240 (387)
T ss_dssp HHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99987633679998246112799867889999999999987404774669999999985023666566704688999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~a~~~i~~~s~P~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~ 320 (387)
T d1qvra2 241 AARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQH 320 (387)
T ss_dssp HHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998641589588999999999999999998740145788887653323567999999999999888879999999999
Q ss_pred ------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~Le~lr~~le~A~r~gd~e~AaeL~y~~ip~le~el~~l~~~~~~~~lvr~~VteedIA~VVSrWTG 387 (387)
T d1qvra2 321 RLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTG 387 (387)
T ss_dssp HHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 9999999999999764688788875250799999999999873579877686398999999976109
|
| >d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: (Phosphotyrosine protein) phosphatases II superfamily: (Phosphotyrosine protein) phosphatases II family: Myotubularin-like phosphatases domain: Myotubularin-related protein 2, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29179.42 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~edGW~~yd~~~E~~RlGl~~~~WRiS~iN~~Y~lC~SYP~~lVVP~~isD~~l~~~a~fr~~~R~Pvl~w~~~~~~ 80 (387)
T d1zsqa2 1 EVFPENGWKLYDPLLEYRRQGIPNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQ 80 (387)
T ss_dssp CCCSSCGGGSCCHHHHHHHTTCSCSSEEEECTTTTSSSCTTSCSSEEEETTCCHHHHHHHHHHBGGGCCCEEEEECTTTC
T ss_pred CCCCCCCHHHCCHHHHHHHCCCCCCCEEEEEECCCCEECCCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 98788763235889999863899888788542699704588998169828589999999987636997607988759998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 a~L~RssqP~~g~~~~r~~ede~~l~~i~~~~~~~~~~~I~D~Rp~~na~an~~~ggG~E~~~~Y~~~~~~f~~i~nih~ 160 (387)
T d1zsqa2 81 ATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHV 160 (387)
T ss_dssp CEEEEECCBCCTTTTCCCHHHHHHHHHHHHHSSSCSSEEEEECSCHHHHHHHHHHTCCCCCTTTCTTEEEEECCCCCHHH
T ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHCCCCCCCHHCCCCCEEEEECCCCHHH
T ss_conf 36885178577756787689999999999737776753555477414688752248986552105675245304665278
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 vr~s~~kl~~~~~~~~~~~~~~s~le~s~WL~~i~~~L~~A~~ia~~l~~~~~sVlVh~sdGwD~T~qvsSL~ql~lDpy 240 (387)
T d1zsqa2 161 MRESLRKLKEIVYPNIEETHWLSNLESTHWLEHIKLILAGALRIADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGY 240 (387)
T ss_dssp HHHHHHHHHHHHSSCCCGGGHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCEEEECSSSSSHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999998558875466775243444499999999999999999970897399857888752489999999973832
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 yRTi~GF~~LIekewi~~Gh~F~~R~~h~~~~~~~~e~sPvFl~FLDcV~ql~~q~P~~FEF~e~~L~~l~~h~~s~~fg 320 (387)
T d1zsqa2 241 YRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFG 320 (387)
T ss_dssp GGSHHHHHHHHHHHTTTTTCCHHHHHTTTCCCTTCTTCCCHHHHHHHHHHHHHHHCTTTCSBCHHHHHHHHHHHHHCSSS
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 11188899999988873378632342678777566777985699999999998749740112799999999986026646
Q ss_pred ------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 tFl~n~e~eR~~~~~~~~t~Slw~~~~~~~~~f~N~~Y~~~~~~~l~P~~~~~~~~~W~~~ylR~~p 387 (387)
T d1zsqa2 321 TFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGSYSNHVLYPVASMRHLELWVGYYIRWNP 387 (387)
T ss_dssp TTCSSSHHHHHHTTHHHHSCCHHHHHHTCGGGGBCTTTTSCSSSCCCCCCSTTTCCCCHHHHTCSCC
T ss_pred CCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEHHHHCCCCCC
T ss_conf 4555899999871768787369999987599855978788999857033675667426753335587
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29178.52 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~~~~~~y~~~p~~i~ra~G~~l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~~~~~~~ 80 (387)
T d1vefa1 1 WRALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPM 80 (387)
T ss_dssp CHHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHH
T ss_pred CHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEECCCCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 96688606531489878898318984749999798799998464187665528969999999999976364666557705
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~ 160 (387)
T d1vefa1 81 RGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVE 160 (387)
T ss_dssp HHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEE
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCE
T ss_conf 99999876530232101111246726799999999876113312325656889996123863478655678878899826
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~p~~d~~~l~~~~~~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PD 240 (387)
T d1vefa1 161 FIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPD 240 (387)
T ss_dssp EECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS
T ss_pred EECCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 86889799999756897479999787788888649989999999999976926984002224674677765446783776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 i~~~gK~l~gG~~~~~~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~l~~~~ 320 (387)
T d1vefa1 241 ILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPK 320 (387)
T ss_dssp EEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCCTT
T ss_pred EEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 33313257887666332221023102236883553799863001011200010333222057665078999998617984
Q ss_pred ------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~g~l~~~~g~~~ir~~Ppl~it~~~ld~~~~~i~~aLS 387 (387)
T d1vefa1 321 IREVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVLA 387 (387)
T ss_dssp EEEEEEETTEEEEEESSCSHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred EEEEEECCEEEEEEEECCCHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 5788521469999982774699999999789759933899899979713999999999999999859
|
| >d1bxba_ c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticus, subsp. Thermophilus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Xylose isomerase domain: D-xylose isomerase species: Thermus aquaticus, subsp. Thermophilus [TaxId: 271]
Probab=100.00 E-value=0 Score=29177.32 Aligned_cols=1 Identities=0% Similarity=0.570 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~p~~~~~f~~~~W~~~~~g~dpfg~~~~~~~~~~~~~~~~~~lg~~~~~fHd~d~~p~~~~~~e~~~~~~~~k~~~~~ 80 (387)
T d1bxba_ 1 MYEPKPEHRFTFGLWTVGNVGRDPFGDAVRERLDPVYVVHKLAELGAYGVNLHDEDLIPRGTPPQERDQIVRRFKKALDE 80 (387)
T ss_dssp CCCCCGGGCEEEEHHHHTCCCCBTTBCCCSCCCCHHHHHHHHHHHTCSEEEEEHHHHSCTTCCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 99998766147997235787889988543112788999999984499878516665588899878999999999998641
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~Gl~~~~~t~nlf~~~~~~~Gs~t~pD~~vR~~Ai~~~k~~id~a~~LGa~~~vlW~G~dG~~~~~~~d~~~~~~~~~e~ 160 (387)
T d1bxba_ 81 TGLKVPMVTANLFSDPAFKDGAFTSPDPWVRAYALRKSLETMDLGAELGAEIYVVWPGREGAEVEATGKARKVWDWVREA 160 (387)
T ss_dssp HTCBCCEEECCCSSSGGGGGCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCTTCEESCGGGCGGGTHHHHHHHH
T ss_pred CCCCEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 68721122454355623324764689889999999999999999998499979975787766776306799999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 l~~v~~~a~~~g~~~~i~iEpkP~EP~~~~~~~~~~~~l~~~~~~g~~~~~gl~lD~~H~~l~g~~~~~~v~~a~~~gkL 240 (387)
T d1bxba_ 161 LNFMAAYAEDQGYGYRFALEPKPNEPRGDIYFATVGSMLAFIHTLDRPERFGLNPEFAHETMAGLNFVHAVAQALDAGKL 240 (387)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCSSSSSSEESSCSHHHHHHHHTTSSSGGGEEECCBHHHHHHTTCCHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHEEECCCCCHHHHCCCCHHHHHHHHHHHCCE
T ss_conf 99999977750788379995168988544214889999999998377020754123044530487668899999983964
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 g~vh~Nd~~~~~~D~DL~~g~~~~~~~~~~~~~L~~~gy~G~~~fD~~~~r~~~~~~l~~~~~~~m~~~a~ll~~a~~l~ 320 (387)
T d1bxba_ 241 FHIDLNDQRMSRFDQDLRFGSENLKAAFFLVDLLESSGYQGPRHFDAHALRTEDEEGVWAFARGCMRTYLILKERAEAFR 320 (387)
T ss_dssp CCEECCBCCSSSSCCCBCTTSSCHHHHHHHHHHHHHTTCCSCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 15574777777887666888621889999999998458876433134567788500689999999999999999999988
Q ss_pred ------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~d~~~~~~l~ary~~~~a~~~~~~~~~~~~~~~l~~~~~~~~a~~~~s~~qE~Le~l~n~~i~g~~~ 387 (387)
T d1bxba_ 321 EDPEVKELLAAYYQEDPAALALLGPYSREKAEALKRAELPLEAKRRRGYALERLDQLAVEYLLGVRG 387 (387)
T ss_dssp TCHHHHHHHHHHTCCCHHHHTTSSSCCSHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHTTCCC
T ss_pred HCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 6768999999987212442201100145679984476678431432672499999999999862369
|
| >d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: beta-secretase (memapsin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29175.87 Aligned_cols=1 Identities=0% Similarity=0.935 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
|
T Consensus 1 ~~~~~~~l~~~~~~~Y~~~i~IGtP~Q~~~li~DTGSs~lWv~~~~c~~~~~~f~~~~SsT~~~~~~~~~i~Y~~g~~~G 80 (387)
T d2qp8a1 1 FVEMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEG 80 (387)
T ss_dssp CTTTTTCEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEEEE
T ss_pred CCCHHHCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCEEE
T ss_conf 92133025589999899999988999799999989961048926898767881583028871757981899968960999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~D~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~~~l~~~~~~~~~fs~~l~~~~ 160 (387)
T d2qp8a1 81 ELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAG 160 (387)
T ss_dssp EEEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCCSCEEEEECCCS
T ss_pred EEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 99999999847773367478999982477621134556622334564435788778537888626574215767632455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~G~l~~Gg~d~~~~~g~~~~~~~~~~~~~~v~~~~i~v~g~~~~~~~~~~~~~~aiiDSGts~i~lp~ 240 (387)
T d2qp8a1 161 FPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPK 240 (387)
T ss_dssp SCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEECCCCGGGGGSSCEEECTTCCSEEEEH
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCEEEEEEEEEEECCEECCCCCCCCCCCCEEEECCCCEEECCH
T ss_conf 44456644457784467456233334573586314543336899879999999656654567764169816997086889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~fp~~~~~~~~~~~~~~~~~~i~p~~y~~~~~~~~~~~~~ 320 (387)
T d2qp8a1 241 KVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDD 320 (387)
T ss_dssp HHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEEEEEEECHHHHEEEECCTTCCSCE
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCEEEEEECHHHHEEECCCCCCCCCE
T ss_conf 99999999856001465567754453156410038986421340578866621233079998879911551356786766
Q ss_pred ------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 c~~~~~~~~~~~~ILG~~Flr~~y~vfD~~~~~IGfA~a~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (387)
T d2qp8a1 321 CYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEGPFVTLDMEDCGYN 387 (387)
T ss_dssp EEEECEEEESSCEEECHHHHTTEEEEEETTTTEEEEEEETTCCCCSSCCCEEEEEEECCCGGGGSCC
T ss_pred EEEEEECCCCCCEEEHHHHHCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCC
T ss_conf 8998707999977970894286899998999999999778687788131256798888984652789
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=100.00 E-value=0 Score=29176.05 Aligned_cols=1 Identities=0% Similarity=0.271 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~p~~g~W~~~~~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~ 80 (387)
T d1k3ia3 1 YTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPG 80 (387)
T ss_dssp CCCCCTTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEE
T ss_conf 98788978716786889861017899925999999984057666788776068999988889686667789874452568
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~ 160 (387)
T d1k3ia3 81 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 160 (387)
T ss_dssp EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred EEEECCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCCEE
T ss_conf 99946886898636888621675675574421565664210130355317826652136633354320566348889551
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (387)
T d1k3ia3 161 SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYD 240 (387)
T ss_dssp EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEE
T ss_pred ECCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCEEEECCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 15887644311346651365042269997079877874686774781486667173166556676657632226378861
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~ 320 (387)
T d1k3ia3 241 AVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPV 320 (387)
T ss_dssp TTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBC
T ss_pred CCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCEE
T ss_conf 35882478875367887752100000111113567884060366566543433566058749998884567668899470
Q ss_pred ------------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~~~~~~~~~~~~~e~y~Ppyl~~~~ 387 (387)
T d1k3ia3 321 FTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYLYNSN 387 (387)
T ss_dssp CCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECGGGBCTT
T ss_pred CEEEEEECCCCEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCHHCCCCC
T ss_conf 1079897999918878899975531279999889999999698767888661148998260405898
|
| >d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tryptophanyl-tRNA synthetase (TrpRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29100.36 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~pw~v~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~rRg~~f~hrd~~~il~~~~~gkp~~vytG 80 (386)
T d1r6ta2 1 EDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG 80 (386)
T ss_dssp CCEESSSCEECSCTTCCCHHHHHHHHTCEECCHHHHHHHHHHHCSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHCCEEEECCCHHHHHHHHHCCCCEEEEEC
T ss_conf 98438660668876666699999984888688899999997536886154533604422679999999974998589945
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~PSg~~lHlGh~v~~~~~~~~q~~~~~~v~i~iaD~~a~~~~~~~~~e~~~~~~e~~~~~lA~GlDp~kt~i~~~s~~~ 160 (386)
T d1r6ta2 81 RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYM 160 (386)
T ss_dssp ECCCTTCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEHHHHG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHH
T ss_conf 17998402899999999999999721324489932517640456999999999999999999817895002899684799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~l~~~~~~~~~l~r~~t~~~~k~~~~~~~~~~~g~~~YP~lQaaDil~~~~d~~~~~~~~~~~lvpvG~DQ~~h~~ltR 240 (386)
T d1r6ta2 161 GMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTR 240 (386)
T ss_dssp GGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 98899999999998756514888864335677676531279889999983470542255665420110262899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 Dia~r~~~~~p~~l~~~~lpgL~G~~~KMSsS~~~s~I~l~D~~~~i~~KI~~~~~~~~~~~~~e~~~~~g~~~~~v~~~ 320 (386)
T d1r6ta2 241 DVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM 320 (386)
T ss_dssp HHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHH
T ss_pred HHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 99998278886221144556778743445567777434635988899997661143168765446000389841317999
Q ss_pred -----------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------8
Q 001511 467 -----------------------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~l~~f~~d~~~~eel~~~y~~G~l~~gd~K~~lae~l~~~l~~~rekr~~~~~~~v~~~l~~~kl~ 386 (386)
T d1r6ta2 321 YLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLA 386 (386)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCCC
T ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999986987589999999976999989999999999999978999999998888999985546799
|
| >d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=29099.83 Aligned_cols=1 Identities=0% Similarity=0.570 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~~pe~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~rpTPLi~~~~Ls~~lgg~~Iy~K~E~lnptGS 80 (386)
T d1v8za1 1 MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGA 80 (386)
T ss_dssp CEETTEECCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSB
T ss_pred CCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 97678098848788899999999999999639899999999987338999855173766876289739999666877877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~KdR~a~~~i~~a~~~G~~~~v~~~s~Gn~g~a~A~aaa~~G~~~~i~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~ 160 (386)
T d1v8za1 81 HKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRT 160 (386)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSS
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCH
T ss_conf 64168999999876528831675225226999999999976986430344115544179999998649827994687430
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~q~~~~~g~~pd~vv~~vGgG~~~~g~~~~~~ 240 (386)
T d1v8za1 161 LKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV 240 (386)
T ss_dssp HHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 88889989999986056654214544574336133310013544537888998628989889977887178899998764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~v~iigvep~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v 320 (386)
T d1v8za1 241 NDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYV 320 (386)
T ss_dssp TCTTSEEEEEEEEETBGGGTBSCCHHHHCEEEEETTEEEEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTTSEEEE
T ss_pred HCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEE
T ss_conf 23670599970576643355532000357655551021001068777603443222221245530577888754854999
Q ss_pred -----------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------8
Q 001511 467 -----------------------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~VtD~E~~~a~~~La~~EGI~~~~~sa~alA~a~kla~~~~~~~~VV~iltG~G~kD~~~~~~~~g 386 (386)
T d1v8za1 321 TVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVSG 386 (386)
T ss_dssp EEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTSCTTCEEEEEECBBSGGGHHHHHHHHC
T ss_pred EECHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHCC
T ss_conf 989999999999999965993566799999999998787199897999968885212999998539
|
| >d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces olivochromogenes [TaxId: 1963]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Xylose isomerase domain: D-xylose isomerase species: Streptomyces olivochromogenes [TaxId: 1963]
Probab=100.00 E-value=0 Score=29099.39 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~p~~~~rF~~~~Wt~~~~g~dpFG~~tr~~~~~~d~~~~~~~lG~~~~~fHd~D~~P~~~~~~e~~~~~~~i~~~l~~ 80 (386)
T d1muwa_ 1 SYQPTPEDRFTFGLWTVGWQGRDPFGDATRPALDPVETVQRLAELGAHGVTFHDDDLIPFGSSDTERESHIKRFRQALDA 80 (386)
T ss_dssp CCCCCGGGCEEEEHHHHTCCCCBTTBCCSSCCCCHHHHHHHHHHHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99898445335886205765879999888999898999999998599879747775688899867889999999999985
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~Gl~~~~~t~nlf~~p~~~~Ga~tspD~~vR~~Ai~~~k~aiDia~~LGa~~vv~W~G~~G~~~~~~~d~~~~~~~l~e~ 160 (386)
T d1muwa_ 81 TGMTVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAKDVRVALDRMKEA 160 (386)
T ss_dssp HTCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCSEEEECCTTCEESSTTSCCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCEECCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 29701134156410200113787792999999999999999999998399848984787755677667999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 l~~v~dya~~~g~~v~~~IEpkP~EP~~~~~~~t~~~al~~l~~~g~~~~~glnlD~gHa~~ag~~~~~~ia~a~~~grL 240 (386)
T d1muwa_ 161 FDLLGEYVTSQGYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGKL 240 (386)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCSSSSSSEESSCSHHHHHHHHTTSSSGGGEEECCBHHHHHTTTCCHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCEECCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCE
T ss_conf 99999999972999369982057887553310769999999997299531346644465330477715899999873867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~vhlNd~~~~~~D~DL~fG~~~~~~~~~~~~~L~~~Gy~G~~~FD~k~~R~~~~~~~~~~~~~~m~~~a~~~~~a~~~~ 320 (386)
T d1muwa_ 241 FHIDLNGQSGIKYDQDLRFGAGDLRAAFWLVDLLESAGYEGPRHFDFKPPRTEDIDGVWASAAGCMRNYLILKERAAAFR 320 (386)
T ss_dssp CCCEECBCCSSSSCCCBCTTSSSHHHHHHHHHHHHHHTCCSCEEECCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 34211533477743456676401789999999999559988330540367788766799999999999999999999865
Q ss_pred -----------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------8
Q 001511 467 -----------------------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~d~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~e~Le~l~~~~l~g~r 386 (386)
T d1muwa_ 321 ADPEVQEALRASRLDELAQPTAADGVQELLADRTAFEDFDVDAAAARGMAFERLDQLAMDHLLGAR 386 (386)
T ss_dssp HCHHHHHHHHHTTHHHHTSCSCTTCHHHHHHCGGGTTTCCHHHHHHSCCCHHHHHHHHHHHHHTCC
T ss_pred HCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 499999999986554113544445256677776520013813343255029999999999971379
|
| >d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Arginase/deacetylase superfamily: Arginase/deacetylase family: Histone deacetylase, HDAC domain: Histone deacetylase 7, HDAC7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29098.95 Aligned_cols=1 Identities=0% Similarity=0.470 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~Tg~vyd~~~l~H~~~~g~~~~HPE~p~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~~L~~vH~~~YI~~l~~~~~ 80 (386)
T d3c10a1 1 TLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPL 80 (386)
T ss_dssp CCTTCEEEECCGGGGGCCCTTCCGGGCSSCTHHHHHHHHHHHHTTCGGGSEEECCCCCCHHHHTTTSCHHHHHHHHCCTT
T ss_pred CCCCCEEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHCCHHHHHHHHHCHH
T ss_conf 99887799977788557899999899897989999999999966996578376789899999988299999999862605
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~Aa~~aaG~~~~a~~~v~~~~~~~afa~~rppGHHA~~~ 160 (386)
T d3c10a1 81 SRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHS 160 (386)
T ss_dssp CSCCCCHHHHHHHHHC---CBCTTSCEESSSSCEECTTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCSSCCTTCBTT
T ss_pred HHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 43112233321034555420367777666888645761089999998457888776542376544441244323545655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~GFC~fNdvAiaa~~l~~~~~~~rV~iiD~DvHhGnGTq~if~~~~~V~~~SiH~~~~~~~~p~tG~~~e~G~g~g~g 240 (386)
T d3c10a1 161 TAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEG 240 (386)
T ss_dssp BCBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECTTTTSTTCCCCTTCCCCGGGTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
T ss_conf 66873433288999999986214677437742467887604676425543354333566545678889887638877766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~n~pl~~~l~~~~~d~~yl~~~~~~l~~~~~~f~PdlIvvsaG~D~~~~D~~pLg~l~lt~~~~~~~~~~l~~~~~~~ 320 (386)
T d3c10a1 241 FNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGA 320 (386)
T ss_dssp CEEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCCGGGCCCBBCHHHHHHHHHHHTTSGGGC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 64456410136799983999999999999999866998899968825334675356367558999999999999873998
Q ss_pred -----------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------8
Q 001511 467 -----------------------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~ 386 (386)
T d3c10a1 321 VVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQR 386 (386)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHHHHTCCCCGGGCSGGGSCCCHHHHHHHHHHHHHHTTTCGGGCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 799968888865899999999999838999987841013588888999999999999886076329
|
| >d1v5da_ a.102.1.2 (A:) Chitosanase {Bacillus sp., strain k17 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: Chitosanase species: Bacillus sp., strain k17 [TaxId: 1409]
Probab=100.00 E-value=0 Score=29096.42 Aligned_cols=1 Identities=0% Similarity=-0.593 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~pfp~~~~y~~~~~~~~~~q~~~~~~~~~~y~~wk~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~t~SEGqgYGM 80 (386)
T d1v5da_ 1 AKEMKPFPQQVNYAGVIKPNHVTQESLNASVRSYYDNWKKKYLKNDLSSLPGGYYVKGEITGDADGFKPLGTSEGQGYGM 80 (386)
T ss_dssp CCCSSCSCCCCCCTTCCCCCSSCHHHHHHHHHHHHHHHHHHHEECCCTTSTTCCEECCCCCCCBTTBCCCEEHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHH
T ss_conf 98788898753536774888667899999999999999999853367777764001465556788898753005888999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 l~Av~~~~~~~nd~~~Fd~lw~wt~~~l~~~~~~L~aW~~~~~~~~v~d~nsAtDgDl~iA~ALl~A~~~Wg~~~~~~Y~ 160 (386)
T d1v5da_ 81 IITVLMAGYDSNAQKIYDGLFKTARTFKSSQNPNLMGWVVADSKKAQGHFDSATDGDLDIAYSLLLAHKQWGSNGTVNYL 160 (386)
T ss_dssp HHHHHTBTTBTTHHHHHHHHHHHHHHTBCSSCTTSBCSEECSSGGGTTTSCCCHHHHHHHHHHHHHHHHHHCSSSSSCHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99998476775619999999999999860679998668857999877799988768999999999999774885178999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~A~~ii~~i~~~~~~~~~~~l~~g~~~~~~~~~~npSY~~p~~~~~fa~~~~d~~W~~v~~~~~~ll~~~~~~~~~~tG 240 (386)
T d1v5da_ 161 KEAQDMITKGIKASNVTNNNQLNLGDWDSKSSLDTRPSDWMMSHLRAFYEFTGDKTWLTVINNLYDVYTQFSNKYSPNTG 240 (386)
T ss_dssp HHHHHHHHHTHHHHHBCTTSSBCSSTTSCTTCCCBCGGGCCHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999998750578887426888788898755831054999999997458972999999999999998763188768
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 L~PDw~~~~~~~~~~~~~~~~~~~~~~~~ydA~Rvpl~la~d~~w~g~~~a~~~~~~~~~f~~~~~~~~~~~i~~~y~l~ 320 (386)
T d1v5da_ 241 LISDFVVKNPPQPAPKDFLDESEYTNAYYYNASRVPLRIVMDYAMYGEKRSKVISDKVSSWIQNKTNGNPSKIVDGYQLN 320 (386)
T ss_dssp CCCSSEETTTTEECCTTGGGSCTTTTSBCTTGGGHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTTCGGGCCSCBCTT
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99631212786767765677777888724119999999998886427804789999999999986147976556632147
Q ss_pred -----------------------------------------------------------------E
Q ss_conf -----------------------------------------------------------------8
Q 001511 467 -----------------------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 G~~~~~~~~~~~~a~~~~aa~~~~~~~~~~~~~~~~~~~~~~~YY~~~L~Ll~ll~lsGn~~~p~p 386 (386)
T d1v5da_ 321 GSNIGSYPTAVFVSPFIAASITSSNNQKWVNSGWDWMKNKRERYFSDSYNLLTMLFITGNWWKPVP 386 (386)
T ss_dssp SCBCCCSCCHHHHHHHHHTTTTCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 742688875899999999862873169999998733357778857999999999997388888998
|
| >d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease, catalytic domain {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Klebsiella aerogenes [TaxId: 28451]
Probab=100.00 E-value=0 Score=29032.94 Aligned_cols=1 Identities=0% Similarity=-2.554 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 GiDtHvHfi~Pqq~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~~~~ml~a~d~~P~N~g~~gkGn~s~~~~l~eqi 80 (385)
T d1ejxc2 1 GIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPVNIGLLGKGNVSQPDALREQV 80 (385)
T ss_dssp EEEEEEECSCTTHHHHHHHTTEEEEEEECCSSSHHHHHSSCCCHHHHHHHHHHHHTTSSSEEEEEEECCCSSHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 95545334488789999866973663686688877777573888899999998655078331052116669868999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~AGa~GlKiHEDwGatpa~id~~L~vad~~dvqv~iHtDtlNE~gfvedT~~a~~gRtiH~~H~EGaGGGHAPDii~~~~ 160 (385)
T d1ejxc2 81 AAGVIGLKIHEDWGATPAAIDCALTVADEMDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACA 160 (385)
T ss_dssp HHTCSEEEEEGGGCCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHTTCCEEESSTTSTTSSSTTTGGGGGG
T ss_pred HHHHCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHC
T ss_conf 71132144775235675899999876754183589760535400200214887579730332025677786631567624
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~nvlpsSTnPT~P~t~nt~~EhldMlmvcHhL~~~ipeDvafAesRiR~eTiaAEdvLhD~GaiSi~sSDsQaMGRvGE 240 (385)
T d1ejxc2 161 HPNILPSSTNPTLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSDSQAMGRVGE 240 (385)
T ss_dssp CTTEEEEEESTTSSCBTTHHHHHHHHHHHC----------CHHHHHHSCHHHHHHHHHHHHTTSSCEEECCTTSSSCTTC
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf 68535789998878866736764772332046898875677664233530123267776345743442153332576774
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 vi~RtwqtA~kmk~~rG~l~~d~~~~DN~RvkRYIAKYTINPAIahGIsh~VGMFGA~G~A~~~tSvtFVSqaAid~gi~ 320 (385)
T d1ejxc2 241 VILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEVGMFGALGSARHHCRLTFLSQAAAANGVA 320 (385)
T ss_dssp HHHHHHHHHHHHHHHHCSCTTCCSSSCHHHHHHHHHHHTHHHHHHTTCTTTSSCGGGSHHHHHHHCEEEECHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCCEECCCCCCCCCCCCCCEEEECHHHHHCCCH
T ss_conf 11020787999987603687777777624777666662368188768455135323456555457138856888867684
Q ss_pred ----------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------~ 467 (1064)
=
T Consensus 321 ~~LgL~K~lvpVkn~R~ItK~DM~~Nda~P~IeVDPeTYeV~aDGelltcePA~~LPLAQRYFLF 385 (385)
T d1ejxc2 321 ERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDAQTYEVRVDGELITSEPADVLPMAQRYFLF 385 (385)
T ss_dssp HHTTCCSEEEECCCTTTCCGGGSTTCCCCCCEEECTTTCCEEETTEECCCCCBSSCSSSTTTCCC
T ss_pred HHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCEEEEECCEECCCCCCCCCCCHHCCCCC
T ss_conf 77388760686148887787786015789982789997689989999046765667631110176
|
| >d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Lactaldehyde reductase FucO species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29027.07 Aligned_cols=1 Identities=0% Similarity=0.570 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 m~~~~~~~~~~~fG~g~l~~l~~~l~~~G~k~~Livt~~~~~~~g~~~~v~~~L~~~gi~~~vf~~v~~~p~~~~v~~~~ 80 (385)
T d1rrma_ 1 MANRMILNETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGL 80 (385)
T ss_dssp CCEEEECCSEEEESTTGGGGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHH
T ss_pred CCCEEECCCCCEECCCHHHHHHHHHHHCCCCEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf 99526669972798689999999999769997999989655658089999999987598599986826997989999886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~D~IiaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~lP~i~IPTtagTgse~t~~avi~~~~~~~ 160 (385)
T d1rrma_ 81 GVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTAAEVTINYVITDEEKRR 160 (385)
T ss_dssp HHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSCCTTTCSEEEEEETTTTE
T ss_pred HHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 54303588889866988422699999999638753026665043222478774674366544643234442224444331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~a~~g~Dal~h~~E~~~s~~~~p~~~~~a~~a~~~~~~~l~~~~~~~~~~~~ 240 (385)
T d1rrma_ 161 KFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAIEGYITRGAWALTDALHIKAIEIIAGALRGSVAGDKDAGE 240 (385)
T ss_dssp EEEEECGGGCCSEEEECGGGTTTSCHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred EEEEEEEECCCCCCCCHHHHHCCCCHHEEEECHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 01355420135322006777327980126400364664112111113320001277899999999752432000056899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~a~~~ag~~~~~~~~g~~hai~~~l~~~~~i~HG~a~ai~lp~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 320 (385)
T d1rrma_ 241 EMALGQYVAGMGFSNVGLGLVHGMAHPLGAFYNTPHGVANAILLPHVMRYNADFTGEKYRDIARVMGVKVEGMSLEEARN 320 (385)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHTTCCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 99999999976651676400053203200233457510001436889987335269999999998388656999899999
Q ss_pred ----------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~i~~i~~~~~~lglP~~L~d~Gv~~~~l~~ia~~a~~~~~~~~nP~~~t~~di~~il~~a~~g~ 385 (385)
T d1rrma_ 321 AAVEAVFALNRDVGIPPHLRDVGVRKEDIPALAQAALDDVCTGGNPREATLEDIVELYHTAWEGG 385 (385)
T ss_dssp HHHHHHHHHHHHTTCCSSGGGGTCCGGGHHHHHHHHHTCGGGGGCSSCCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999999999859999988829899999999999985720059994389999999999997489
|
| >d1xmxa_ c.52.1.26 (A:) Hypothetical protein VC1899 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Restriction endonuclease-like superfamily: Restriction endonuclease-like family: Hypothetical protein VC1899 domain: Hypothetical protein VC1899 species: Vibrio cholerae [TaxId: 666]
Probab=100.00 E-value=0 Score=29026.39 Aligned_cols=1 Identities=0% Similarity=-0.726 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~m~~hv~~i~~~~~~n~~p~l~~~~~p~~~v~i~t~~~~~~~e~L~~~lk~~~i~~e~~~i~~~~d~~~I~~~l~~~~~ 80 (385)
T d1xmxa_ 1 NAMAIHVGIIDQDPVRLVTPLLDHRTVSRHIIFIGDHTQTVIYQRLSDVLNKRNISTDFFEIPAGSNTSAIKSAIRELAE 80 (385)
T ss_dssp CTTEEEEEECCSSCHHHHHHHHSTTCCCCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 96289999963772435568654788886699996743699999999999846986168745875576999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~v~lN~TGGTK~Msl~ay~~~r~~~~~~~Y~d~~~~rl~~l~~~~~~~~~~~~~i~i~d~l~~~~~~~~~~~~ 160 (385)
T d1xmxa_ 81 TLKARGEEVKFNASCGLRHRLLSAYEVFRSYHWPIFVVEPNSDCLCWLYPEGNNDTQVQDRITIADYLTIFGARGEFNEH 160 (385)
T ss_dssp HHHHHTCEEEEECSSSCHHHHHHHHHHHHHTTCCEEEECTTTCEEEEEESTTSCCEECCCCCCHHHHHHHTTCEEECC--
T ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCHHCCCC
T ss_conf 62203873999916766888999999998559846999769966999667767675577878899999984033000566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~el~~~l~~ln~~~~~~~~~~~~~~~~s~~~~~~~~~~~ll~~l~~~~~~~~~~~~l~F 240 (385)
T d1xmxa_ 161 QLSPQLDQQLYQLGERWASNALELGPGLATLNYLATTCRKEQKLDVELSDKQQGYRELNLLLSDLVEAKIASYENGILTF 240 (385)
T ss_dssp --CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSEEECCHHHHTCHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCEEEE
T ss_conf 68866789999999998634776767999999986512212010244462244536788999988753432214863231
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~a~~Fl~G~WLE~yv~~~l~~~~~~~~~~~d~~~~v~i~~~~~~~~~~nElDv~~~~~~~l~~IECKt~~~~~~~~~ 320 (385)
T d1xmxa_ 241 INEEARRFANGEWLETLVHSTVKQIQDDMPTIQDRSLNVQVYRQLGEREVRNELDVATVVNNKLHIIECKTKGMRDDGDD 320 (385)
T ss_dssp SSHHHHHHHHTTHHHHHHHHHHHHHHTTCTTEEEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEESSCCCC-CCC
T ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCHHH
T ss_conf 41778743588089999999999877540445026767798326888765532689999799999999568887754578
Q ss_pred ----------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~l~kl~~l~~~lgG~~~r~~LVs~~~~~~~~~~ra~~~~i~vI~~~~l~~l~~~L~~w~~~~~~~ 385 (385)
T d1xmxa_ 321 TLYKLESLRDLLGGLQARAMLVSFRPLRHNDITRAEDLGLALIGPDELKDLKTHLTQWFKAAGGN 385 (385)
T ss_dssp HHHHHHHHHHHHHGGGCEEEEEESSCCCHHHHHHHHHHTCEEECGGGGGGHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89999999998289532499999058847799999866949983888899999999999973799
|
| >d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHH phosphoesterases superfamily: DHH phosphoesterases family: Exonuclease RecJ domain: Exonuclease RecJ species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29024.69 Aligned_cols=1 Identities=0% Similarity=-1.457 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~l~~m~~A~~~i~~ai~~~e~I~I~gDyD~DGitS~aIl~~~L~~~g~~~~~~Ip~R~~eGyGl~~~~i~~~~~~ 80 (385)
T d1ir6a_ 1 PLALLPLKGLREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLEA 80 (385)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEECCCTTTSCSSCCGGGHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHC
T ss_conf 97676735899999999999977997999927786067999999999998899759987786656998689999998533
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~LiItvD~G~~~~e~i~~~~~~gi~vIv~DHH~~~~~~~~~~iv~~~~~~~~~~~~~gaGva~~l~~~l~~~~~~~~~~ 160 (385)
T d1ir6a_ 81 SDLFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTPPPGLVVHPALTPDLKEKPTGAGVAFLLLWALHERLGLPPPL 160 (385)
T ss_dssp CSEEEESSCCTTCGGGHHHHTTSCCEEEEECCSCCCSSCCSSEEECGGGSTTCCCCCCHHHHHHHHHHHHHHTTTCCCCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCHH
T ss_conf 77699823652203667667632872321465465657401212157678850101302578999999886432442202
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~l~L~aiGtiaD~~pL~~eNR~lv~~gl~~~~~~~~~g~~~L~~~~~~~~~~~di~f~i~P~iNA~GRl~~a~~a~~lL 240 (385)
T d1ir6a_ 161 EYADLAAVGTIADVAPLWGWNRALVKEGLARIPASSWVGLRLLAEAVGYTGKAVEVAFRIAPRINAASRLGEAEKALRLL 240 (385)
T ss_dssp GGHHHHHHHHHHTTCCCSSHHHHHHHHHHHHCTTCSCHHHHHHHHHTTCCSCSHHHHHTHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 44455456455455401367889987777785114558899997542213201221111131113334444310212444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~a~~~a~~l~~~N~~Rk~~~~~i~~~a~~~~~~~~~~i~~~~~~~~~GviGivAsrl~~~~~kP~iv~~~~kGS 320 (385)
T d1ir6a_ 241 LTDDAAEAQALVGELHRLNARRQTLEEAMLRKLLPQADPEAKAIVLLDPEGHPGVMGIVASRILEATLRPVFLVAQGKGT 320 (385)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCTTSSSEEEECTTCCHHHHHHHHHHHHHHHCSCEEEEETTEEE
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCEEE
T ss_conf 41236789999999887777899999999999875430335159995377662022045899999729978999667387
Q ss_pred ----------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~Rs~~g~~l~~~l~~~~~~l~~~GGH~~AaG~~i~~~~~~~F~~~l~~~~~~~~~~~~~~~~~d~ 385 (385)
T d1ir6a_ 321 VRSLAPISAVEALRSAEDLLLRYGGHKEAAGFAMDEALFPAFKARVEAYAARFPDPVREVALLDL 385 (385)
T ss_dssp EECCSSCCHHHHHHTTGGGCSEEEECSSEEEEECCGGGHHHHHHHHHHHHHSSCCTTTTCCSTTC
T ss_pred EECCCCCCHHHHHHHHHCHHHCCCCHHHCCEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHCCC
T ss_conf 76899978999999874530137991670467974989999999999999856353220442479
|
| >d1uhga_ e.1.1.1 (A:) Ovalbumin {Hen (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Ovalbumin species: Hen (Gallus gallus) [TaxId: 9031]
Probab=100.00 E-value=0 Score=29024.15 Aligned_cols=1 Identities=0% Similarity=-1.656 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~l~~~~~~Fa~~l~~~l~~~~~~~N~v~SP~si~~~Laml~~GA~g~T~~el~~~L~~~~~~~~~~~~~~~~~~~~~~~ 80 (385)
T d1uhga_ 1 GSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVH 80 (385)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCTTSCEEECHHHHHHHHHHHHTTCCHHHHHHHHHHHTCTTCTTCSHHHHTTTTSCTTTT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHH
T ss_conf 96789999999999999861396986998889999999999986775899999997388877664301444203388999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~l~v~~~~~~~~~f~~~~~~~y~~~~~~~df~~~~~~a~~~IN~wv~~~T~g~i~~~ 160 (385)
T d1uhga_ 81 SSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNV 160 (385)
T ss_dssp HHHHHHHHHHTSCCSSEEEEEEEEEEEETTSCBCHHHHHHHHHHCSSCEEEECCTTTHHHHHHHHHHHHHHHTTTCSCCC
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999963899873699998888866765448899999987097334564311799999999999998706886566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 v~~~~l~~~t~l~lina~~f~~~W~~~F~~~~t~~~~F~~~~~~~~~v~~m~~~~~~~~~~~~~~~~~~v~Lpy~~~~~s 240 (385)
T d1uhga_ 161 LQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMS 240 (385)
T ss_dssp SCTTSSCTTCCEEEEEEEEEEECEEECCCGGGCEEEEECCCC--CEEEEEEEEEEEEEEEEEGGGTEEEEEEEBTTSSEE
T ss_pred CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEHHHEECCCCCCCCCCCCCCEEEECCCCCCCEE
T ss_conf 78667896544114542799542046664555540664258994353002001021234545566817887132489758
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 m~iilP~~~~~l~~~~~~l~~~~l~~~~~~~~~~~~~v~l~lPkF~i~~~~dl~~~L~~lGl~~~F~~~adfs~is~~~~ 320 (385)
T d1uhga_ 241 MLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAES 320 (385)
T ss_dssp EEEEEESSTTCHHHHHHHCCHHHHHHHTSTTTCEEEEEEEEEECEEEEEEEEHHHHHHHHTCCGGGSTTCCCTTTBCSTT
T ss_pred EEEEECCCCCCHHHHHHHCCHHHHHHHHHHHCCCCEEEEEEEEEEEEECCEEHHHHHHHCCCCHHHCCCCCCCCCCCCCC
T ss_conf 99997776676155554213556999763430424599997104876311007998875598111068787656779998
Q ss_pred ----------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------~ 467 (1064)
=
T Consensus 321 l~vs~i~q~~~i~v~E~Gt~a~a~t~~~~~~~~~~~~f~~drPF~f~I~~~~t~~~lf~G~v~~P 385 (385)
T d1uhga_ 321 LKISQAVHAAHAEINEAGREVVGSAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP 385 (385)
T ss_dssp CCEEEEEEEEEEEECSCEEECCCHHHHHHHHTTCCCEEECCSCEEEEEEETTTCCEEEEEEESCC
T ss_pred CEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCC
T ss_conf 06552788999998998713010120001367899779913999999998999968999994398
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=100.00 E-value=0 Score=29022.29 Aligned_cols=1 Identities=0% Similarity=-0.959 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~p~~~~~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~dw~~~t 80 (385)
T d1cf3a1 1 GIEASLLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYET 80 (385)
T ss_dssp CHHHHSBCCGGGTTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCCTTSCHHHHBGGGTTTTTTSTTBCCEEC
T ss_pred CCCHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 96605218912126996889998968899999999987879829998889998787832048767755218978768605
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~r~~~~~~G~~lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~~~~~~~~~~~~~~~~~ 160 (385)
T d1cf3a1 81 VELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNA 160 (385)
T ss_dssp CCCTTTSCCCEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCG
T ss_pred CCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 57677894365221002466512331353215866611210036878676336688999887610787311221122355
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~g~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~d~n~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~nl 240 (385)
T d1cf3a1 161 SCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNL 240 (385)
T ss_dssp GGSCSSSSEEEBCCCCSSCBCTHHHHHHHHHHTTTCCBCCCTTSSCCCEEECCCBSBCTTCBBCCHHHHHTGGGTTCTTE
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHCCCCC
T ss_conf 55677543334565545556878999999999769997677555665533223332322333223556533732107743
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl~SGIGp~~~L~~~gI~~~~dlP~ 320 (385)
T d1cf3a1 241 QVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPV 320 (385)
T ss_dssp EEEESCEEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCCCSBCCCT
T ss_pred CCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEECCEEEECCCHHHCHHHHHHCCCCCHHHHHHCCCCEEEECCC
T ss_conf 33377368888871899654799999986899789999688899868535499999865998378998779986998974
Q ss_pred ----------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 g~~~~~~~~~~~vv~~~~~v~g~~~lr~v~~s~~p~~~~~~~~~~~~~~a~~~~d~i~~~~~~~~ 385 (385)
T d1cf3a1 321 GLCSMMPKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDYASMQ 385 (385)
T ss_dssp TCTCBSCGGGTCSBCTTSBBTTCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 04206887766614665542660571742575786212675148799985366789998775449
|
| >d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp175a1 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29021.63 Aligned_cols=1 Identities=0% Similarity=1.334 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~~~~~~~~~~~~~~dp~~~~~~~~~kyg~v~~~~~~~p~v~v~dp~~v~~il~~~~~~~~~~~~~~~~~~~G~gl~ 80 (385)
T d1n97a_ 1 MKRLSLREAWPYLKDLQQDPLAVLLAWGRAHPRLFLPLPRFPLALIFDPEGVEGALLAEGTTKATFQYRALSRLTGRGLL 80 (385)
T ss_dssp CEECCHHHHHHHHHHHHHCHHHHHHHHHHHCSEEEECCTTCCEEEECSHHHHHHHHHCTTEECCSHHHHHHHHHHCSSTT
T ss_pred CCCCCCCCCCHHHHHHHHCHHHHHHHHHHHCCCEEEEECCEEEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCEE
T ss_conf 98888553538799987799999999999789789996998799989999999997289977688607779998579500
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~g~~wk~~R~~l~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~vdl~~~l~~~~~~vi~~~~fg~~~~~~~~~~~~~~ 160 (385)
T d1n97a_ 81 TDWGESWKEARKALKDPFLPKNVRGYREAMEEEARAFFGEWRGEERDLDHEMLALSLRLLGRALFGKPLSPSLAEHALKA 160 (385)
T ss_dssp TCCHHHHHHHHHHHCGGGSHHHHHTTHHHHHHHHHHHHHTCCSCCEEHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 37979999999997234144432231025778999987650455335788888875520255553465432015666665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ei~~~~~~~l~ag~dTt~~~l~~~l~~L~~~ 240 (385)
T d1n97a_ 161 LDRIMAQTRSPLALLDLAAEARFRKDRGALYREAEALIVHPPLSHLPRERALSEAVTLLVAGHETVASALTWSFLLLSHR 240 (385)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHGGGTTSTTGGGSCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 56777777666665455899999986515678899887511104697889999999988765024211211025676541
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 P~v~~~l~~E~~~~~a~i~EtlRl~p~~~~~~r~~~~d~~~~g~~i~~g~~v~~~~~~~~~~~~~dp~~F~PeRf~~~~~ 320 (385)
T d1n97a_ 241 PDWQKRVAESEEAALAAFQEALRLYPPAWILTRRLERPLLLGEDRLPPGTTLVLSPYVTQRLHFPDGEAFRPERFLEERG 320 (385)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHSCSSCCEEEEESSCEEETTEEECTTCEEEECHHHHHHHSSTTTTSCCTTHHHHSCC
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 02333333333332101201122333332212233322233333333333333332210011478876638432376567
Q ss_pred ----------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~lpFG~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~p~~~~~~r~r~ 385 (385)
T d1n97a_ 321 TPSGRYFPFGLGQRLCLGRDFALLEGPIVLRAFFRRFRLDPLPFPRVLAQVTLRPEGGLPARPRE 385 (385)
T ss_dssp CCBTTBCTTCCSTTCCTTHHHHHHHHHHHHHHHHTTCBCCCCCCCCEEESSSEEETTCCEECCBC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCEEEEECCCEEEEEEC
T ss_conf 88887067899765690399999999999999998378896898732460578646981788609
|
| >d2c5wb1 e.3.1.1 (B:266-650) Penicillin-binding protein 1a, transpeptidase domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: Penicillin-binding protein 1a, transpeptidase domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=0 Score=29020.29 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~yp~~~d~~~~e~i~~~~~~~~~~~~~~G~~I~tTiD~~lQ~~~e~~~~~~~~~~~~~~~~~~a~vv~d~~TG~IlA~v 80 (385)
T d2c5wb1 1 SNYPAYMDNYLKEVINQVEEETGYNLLTTGMDVYTNVDQEAQKHLWDIYNTDEYVAYPDDELQVASTIVDVSNGKVIAQL 80 (385)
T ss_dssp CCSCGGGHHHHHHHHHHHHHHHSCCTTTSCEEEEECCCHHHHHHHHHHHHCSSSCCCSCSSCEEEEEEEETTTCBEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEE
T ss_conf 99748999999999998777644232069987994789999999999997534312678663289999988999399999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~N~a~~~~~~pGStfKp~~~yaaAle~g~~~~~~~~~~d~~~~~~~~~~~~~n~~~~~~G~itl~~al 160 (385)
T d2c5wb1 81 GARHQSSNVSFGINQAVETNRDWGSTMKPITDYAPALEYGVYESTATIVHDEPYNYPGTNTPVYNWDRGYFGNITLQYAL 160 (385)
T ss_dssp CCSSCCCCCTTCCCTTTCCCSCCGGGHHHHHTHHHHHHTTSCSBSSCEEEESSCBCTTSSCBCCCTTSCCCEEEEHHHHH
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHH
T ss_conf 55655544434543201143467740447899999986497002331123454211136866422465565136650333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~S~N~~~~~l~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~tplqla~aya~iAngG~~~~P~~i~~i 240 (385)
T d2c5wb1 161 QQSRNVPAVETLNKVGLNRAKTFLNGLGIDYPSIHYSNAISSNTTESDKKYGASSEKMAAAYAAFANGGTYYKPMYIHKV 240 (385)
T ss_dssp HTTCHHHHHHHHHHHCHHHHHHHHHTTTCBCSSCCGGGGSCCCCSSCCSSBSCCHHHHHHHHHHHHTTSEEECCBSEEEE
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 31655300345666403368999997087545653223445441135885256899999988765147643221430122
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~d~~~~~~~~~~~~~~v~s~~~a~~~~~~m~~vv~~GT~~~a~~~~~~vaGKTGTaq~~~~~~~~~~~~~~~~~~d~WFv 320 (385)
T d2c5wb1 241 VFSDGSEKEFSNVGTRAMKETTAYMMTDMMKTVLTYGTGRNAYLAWLPQAGKTGTSNYTDEEIENHIKTSQFVAPDELFA 320 (385)
T ss_dssp EETTSCEEECCCCEEECSCHHHHHHHHHHHHHHHHHSTTGGGCCTTCCCEEEEEECCCCHHHHHHTCCCSSCEESCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 12344422123455420477888888764110135775221356565313565565666665444435564222205999
Q ss_pred ----------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 G~~P~~~~~Vwvg~~~~~~~~~~~G~~~Aapi~~~im~~~~~~~~~~~f~~P~gi~~~g~~~~~~ 385 (385)
T d2c5wb1 321 GYTRKYSMAVWTGYSNRLTPLVGNGLTVAAKVYRSMMTYLSEGSNPEDWNIPEGLYRNGEFVFKN 385 (385)
T ss_dssp EECSSEEEEEEEECSSTTSCEEGGGGGHHHHHHHHHHHHHHSSSCCCCCCCCTTEEEETTEEEEC
T ss_pred ECCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCEEEECC
T ss_conf 55998899999940788887688722889999999999997269977799999867767089529
|
| >d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RNB domain-like domain: Exoribonuclease 2, RNB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29027.60 Aligned_cols=1 Identities=100% Similarity=0.138 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 e~~~~~~~~~~~~~~~R~Dl~~l~~~tID~~~a~d~DDAisie~~~~~~~~l~VHIADva~~v~~~s~Ld~~A~~R~~S~ 80 (385)
T d2ix0a4 1 EAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTN 80 (385)
T ss_dssp SCCCCCCCCCCCCCCCCEECTTSCCBEEECSSCCCCCEEEEEEEEGGGEEEEEEEECCGGGTSCTTSHHHHHHHHHCBCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCHHHHHCCCCHHHHHHHHHCCCE
T ss_conf 99875431001467874208899989976999942665589999689919999998777887598999999999968838
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 Ylp~~~~pMLP~~ls~~~~SL~~~~~r~a~s~~~~l~~~g~i~~~~~~~~s~I~s~~~ltY~~v~~~l~~~~~~~~~~~~ 160 (385)
T d2ix0a4 81 YLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEA 160 (385)
T ss_dssp EETTEEECSSCHHHHHTTSSCCTTCEEEEEEEEEEECTTCCBCSCCEEEEEEEECCCEEEHHHHHHHHTTCSSCCCSSHH
T ss_pred ECCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEEEECCCCCEECCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHH
T ss_conf 89999778898166420014566532047778999856761401336876789726757499999997403334532022
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~l~~L~~~~~~lr~~R~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~lieE~MilaN~~va~~l~~~~~~~i 240 (385)
T d2ix0a4 161 IAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 240 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCCCCCEEEEEECTTSCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 59999999999999999874167621343022010244455413787404088888888887766899999997348873
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~R~~~~p~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~a~ys~~~~~H~gLgl~~Y 320 (385)
T d2ix0a4 241 YNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAY 320 (385)
T ss_dssp EEEBCCSCGGGHHHHHHHHHHTTCCCCTTGGGSHHHHHHHHHHHHHSSSSHHHHHTGGGCCCCEEESSCCCBTTTTBSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
T ss_conf 22222357477899999999710366855334625677776520355416789999998643103798877413084612
Q ss_pred ----------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 thfTSPIRRY~DLivhrqL~a~L~~~~~~~~~~ei~~~~~~~~~~a~~aer~~~~~~~~~~lk~~ 385 (385)
T d2ix0a4 321 ATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDK 385 (385)
T ss_dssp BCCSCTTTBHHHHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred EEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 01586776377899999999997699999889999999999999999999999999999985789
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=100.00 E-value=0 Score=29020.18 Aligned_cols=1 Identities=0% Similarity=-1.787 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~ipmrDG~~L~~~v~~P~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~ 80 (385)
T d2b9va2 1 HDPLSVQTGSDIPASVHMPTDQQRDYIKREVMVPMRDGVKLYTVIVIPKNARNAPILLTRTPYNAKGRANRVPNALTMRE 80 (385)
T ss_dssp CCTTTCCCSCSCC---------CCSEEEEEEEEECTTSCEEEEEEEEETTCCSEEEEEEEESSCHHHHTCSSTTCSSHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 99754345777786665887667797686889989999889999997189996018999816788876556775322354
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~a~~Gy~vv~~d~RG~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~ 160 (385)
T d2b9va2 81 VLPQGDDVFVEGGYIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGF 160 (385)
T ss_dssp HSCGGGHHHHHTTCEEEEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHH
T ss_pred CCCHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHH
T ss_conf 43057999996896899976774368898512045210011220155787799999999856674446410045667899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~a~~~~~~l~a~~~~~~~~d~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (385)
T d2b9va2 161 TVVMALLDPHPALKVAAPESPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFAT 240 (385)
T ss_dssp HHHHHHTSCCTTEEEEEEEEECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCH
T ss_conf 99999854677634999812456532101234773011210899986541014586411114678889987252445320
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~p~~~~~~~~p~~d~~w~~~s~~~~~~~~~i~vP~l~~~g~~dd~~~~g~~~~~~~l~~~~~~~~~~LiiGPw~ 320 (385)
T d2b9va2 241 QAGLDQYPFWQRMHAHPAYDAFWQGQALDKILAQRKPTVPMLWEQGLWDQEDMWGAIHAWQALKDADVKAPNTLVMGPWR 320 (385)
T ss_dssp HTTGGGCHHHHHHHHCCSSSHHHHTTCHHHHHHHHCCCSCEEEEEETTCSSCSSHHHHHHHHHHHTTCSSCEEEEEESCC
T ss_pred HCCCCHHHHHHHHCCCCCCCHHHHHCCHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 10442134566530376543122315846888633556762899841368765433789999875156888579993776
Q ss_pred ----------------------------------------------------------------E
Q ss_conf ----------------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------------~ 467 (1064)
=
T Consensus 321 H~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~WFD~~LKG~~~~~~~p~v~~~~~G~~~Wr~~~~W 385 (385)
T d2b9va2 321 HSGVNYNGSTLGPLEFEGDTAHQYRRDVFRPFFDEYLKPGSASVHLPDAIIYNTGDQKWDYYRSW 385 (385)
T ss_dssp TTGGGSCCSEETTEECSSCHHHHHHHHTHHHHHHHHHSTTCCCCCCCSEEEEETTTTEEEEESSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEECCCC
T ss_conf 77866566666664567520013689999999999708999999999879998789827418979
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=100.00 E-value=0 Score=28945.40 Aligned_cols=1 Identities=100% Similarity=1.201 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~~~~~~pi~~~f~D~~l~~~~~~~l~~~~~~~~~~~~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~ 80 (384)
T d2omza2 1 LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD 80 (384)
T ss_dssp CSCCCCSSCEEHHHHSCSHHHHHHHHHHTTCSSTTSEECHHHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC
T ss_conf 97652589998331320889999999986777778863988957878998999898776242458999989681881798
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 l~~l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 160 (384)
T d2omza2 81 ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160 (384)
T ss_dssp CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 86334771101030134333222211123343334433222222222222222211213466313100232222112222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l 240 (384)
T d2omza2 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL 240 (384)
T ss_dssp EEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGC
T ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHCC
T ss_conf 21232201111245421101122243332110022353233303577447878644457787888877777896134325
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~ 320 (384)
T d2omza2 241 TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320 (384)
T ss_dssp TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCS
T ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEECCCCCCC
T ss_conf 65341004467447877535546687754567445787732356522223323233333221000024676777788778
Q ss_pred ---------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------8
Q 001511 467 ---------------------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~l~~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~Na 384 (384)
T d2omza2 321 DISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 384 (384)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCCEE
T ss_pred CCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCCCEEECCCCCCCCCHHHCCCCCCCEEECCCCC
T ss_conf 9845366898898989899899974670899999898979958998000039999996397895
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28952.83 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~k~~T~~vh~G~~~~~~~gav~pPI~~sst~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEgg~~a~~~sSGMaAi~~ 80 (384)
T d1cs1a_ 1 RKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHL 80 (384)
T ss_dssp CCHHHHHHHTTTTCCTTTCBSSCCBCCCSBBCCSBTTBCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH
T ss_pred CCHHHHEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf 97404214689898888998259844888746089776568743189887899999999998299706884372799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~i 160 (384)
T d1cs1a_ 81 VTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHL 160 (384)
T ss_dssp HHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHH
T ss_pred HHHHCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCEECCHHHHHHH
T ss_conf 98631445550013465200246665421122333222356788799986216666279971456653010457887554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 a~~~g~~~vVDNT~atP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~ 240 (384)
T d1cs1a_ 161 AREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLL 240 (384)
T ss_dssp HHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHH
T ss_pred HHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 54148679971553474546664468889998063003667774443345782665420011221122024500389996
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 rgL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~f~~~L~l~~ 320 (384)
T d1cs1a_ 241 RGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFT 320 (384)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSE
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCE
T ss_conf 12111478998999999999996445886446641223301489998750689861268752466999999998389155
Q ss_pred ---------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------8
Q 001511 467 ---------------------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlEd~eDLi~Dl~~AL~aa~~g 384 (384)
T d1cs1a_ 321 LAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAANKG 384 (384)
T ss_dssp EBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHTCC
T ss_pred ECCCCCCCCCEECCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf 5626687540430661015100799999866989296999865099999999999999986079
|
| >d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylococcus capsulatus [TaxId: 414]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Ferritin-like superfamily: Ferritin-like family: Ribonucleotide reductase-like domain: Methane monooxygenase hydrolase beta subunit species: Methylococcus capsulatus [TaxId: 414]
Probab=100.00 E-value=0 Score=28952.53 Aligned_cols=1 Identities=100% Similarity=0.138 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~a~~~~~~~~~r~~~~~~~p~~rr~seYE~vT~~~qp~p~~~~~~~~~~~W~~~~~~g~p~y~~ 80 (384)
T d1mtyb_ 1 ERRRGLTDPEMAAVILKALPEAPLDGNNKMGYFVTPRWKRLTEYEALTVYAQPNADWIAGGLDWGDWTQKFHGGRPSWGN 80 (384)
T ss_dssp CCCCTTTCHHHHHHHHHHCCSSCSCSCCCTTTTSCCSSSSCCHHHHHHTTCSCCBTTSTTCCBCSCCSSCCTTCCCSSCG
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCHHHCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 98667998778899861277886667776424467577896643510227889956617767647764613899998886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~Tal~~~DW~~frDP~q~~yrtY~~~qae~e~~v~~~~d~~~~~~~~~~l~~~w~~~~L~~~l~p~r~~E~ga~~~~a~ 160 (384)
T d1mtyb_ 81 ETTELRTVDWFKHRDPLRRWHAPYVKDKAEEWRYTDRFLQGYSADGQIRAMNPTWRDEFINRYWGAFLFNEYGLFNAHSQ 160 (384)
T ss_dssp GGCSCCCSCTTCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGSCHHHHHTTTTTHHHHHHHHHHHHHHTTHH
T ss_pred CCCEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 64313447746535801889999999999999999999999996696211999999999999860240799999987899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 i~r~~~g~~i~~a~~fqa~DeLR~aQ~i~~~~~~L~~~~pgf~~~~~~~k~~W~~dp~wQg~R~~vE~~l~~~~Dw~E~~ 240 (384)
T d1mtyb_ 161 GAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLAKIVPGFDESTAVPKAEWTNGEVYKSARLAVEGLWQEVFDWNESA 240 (384)
T ss_dssp HHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHCSTTHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 98646868999999998766888999999999999874789862337998886048065779999998987114499999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 vA~Nlv~dpll~~L~~~~f~~~~Aa~nGD~~t~~l~~s~q~D~~Rh~~~~~alvk~~l~~dpe~~~~Nr~llq~Wi~~W~ 320 (384)
T d1mtyb_ 241 FSVHAVYDALFGQFVRREFFQRLAPRFGDNLTPFFINQAQTYFQIAKQGVQDLYYNCLGDDPEFSDYNRTVMRNWTGKWL 320 (384)
T ss_dssp HHHHHTHHHHHHHHHHHTTHHHHGGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99876488644899999999999997698047999999998999999899999999984585332668999999999999
Q ss_pred ---------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------8
Q 001511 467 ---------------------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~a~~Al~~~~pi~s~~p~~~~~~~~~~a~~~rv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (384)
T d1mtyb_ 321 EPTIAALRDFMGLFAKLPAGTTDKEEITASLYRVVDDWIEDYASRIDFKADRDQIVKAVLAGLK 384 (384)
T ss_dssp HHHHHHHHHHGGGGGGSCTTSCCHHHHHHHHHHHHHHHHHHTGGGGTCCCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 9999999987687610677878889999999999987653024103665458899999972369
|
| >d3c0na2 f.8.1.1 (A:85-468) (Pro)aerolysin, pore-forming lobe {Aeromonas hydrophila [TaxId: 644]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Aerolisin/ETX pore-forming domain superfamily: Aerolisin/ETX pore-forming domain family: (Pro)aerolysin, pore-forming lobe domain: (Pro)aerolysin, pore-forming lobe species: Aeromonas hydrophila [TaxId: 644]
Probab=100.00 E-value=0 Score=28952.11 Aligned_cols=1 Identities=0% Similarity=0.802 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ip~~~~~~~~~~d~~~~~~~~v~~~~~fi~pls~LAh~LGY~W~gg~~~q~Vged~~~~r~gd~w~~~~~n~g~c~gyrc 80 (384)
T d3c0na2 1 IPTLSALDIPDGDEVDVQWRLVHDSANFIKPTSYLAHYLGYAWVGGNHSQYVGEDMDVTRDGDGWVIRGNNDGGCDGYRC 80 (384)
T ss_dssp CCCCCCEEECSCCHHHHHHHHHTCTTTTHHHHHHHHHHHTBSCCSCTTCSSTTCSEEEEECSSSEEEEECCCSCCCSTTT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEECCCCCCEECCCCEEEECCCEEEEECCCCCCCCCEEE
T ss_conf 98654411389987887888762870011569999865073677677874114452566438767996256899774451
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~er~ki~~~nf~~~i~~~~f~~G~~~v~~~epi~t~s~~a~N~sDt~qt~itvt~~~t~T~TWSkT~s~~~s~sV~ik~s 160 (384)
T d3c0na2 81 GDKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWAVNDSDTPQSGYDVTLRGDTATNWSKTNTYGLSEKVTTKNK 160 (384)
T ss_dssp TSCCEEEEEEEEEEEEEEEEEECCCSEEEEEEEEEEEEEEEECSSSCBCCEEEEEEEEEEEEEEECCSSSGGGTCBCSSC
T ss_pred CCCCEEEEEEEEEEECCCCEECCCCEEECCCEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
T ss_conf 56215898756778657644427818844542899999997389886158899999998423898654778889999888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 f~iPligeteisvs~S~n~s~s~s~t~S~T~T~t~s~~VtVPP~Skv~V~i~l~rs~idVPYt~t~~I~Ydv~~~gFLRw 240 (384)
T d3c0na2 161 FKWPLVGETELSIEIAANQSWASQNGGSTTTSLSQSVRPTVPARSKIPVKIELYKADISYPYEFKADVSYDLTLSGFLRW 240 (384)
T ss_dssp EECCCCSSSCCCCEECTTSCGGGCCEEEEEEEECCEECCCBCTTEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEBCT
T ss_pred EECCEEEEEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEC
T ss_conf 85663514469999976788850675137899888876301898359999999866873556899999998987116741
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 gGNa~~~hp~~Rpt~~~tf~~g~~~~~~~~i~yq~d~r~ipg~~~~wdW~w~~~~~g~~~m~~~~~~~~R~~~s~isG~f 320 (384)
T d3c0na2 241 GGNAWYTHPDNRPNWNHTFVIGPYKDKASSIRYQWDKRYIPGEVKWWDWNWTIQQNGLSTMQNNLARVLRPVRAGITGDF 320 (384)
T ss_dssp TCCCBTTCCSSCCEEEEEEEESSCCCSTTCHHHHHHTTTCGGGCSSBCHHHHHHHHCHHHHHHHHHHHTCCEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 56213448988886426886057888743411243202357876511364155553567777777664222346434217
Q ss_pred ---------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------8
Q 001511 467 ---------------------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~a~sq~~g~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 384 (384)
T d3c0na2 321 SAESQFAGNIEIGAPVPLAADSKVRRARSVDGAGQGLRLEIPLDAQELSGLGFNNVSLSVTPAA 384 (384)
T ss_dssp EEEEEEECCCEECCCEEC-----------------CCEEECCCCHHHHHHHTCEEEEEEEEECC
T ss_pred EEEECCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCHHHHHHCCCCCEEEEEEECC
T ss_conf 8850211015524711158068642346664467863897347977886367674389976389
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=100.00 E-value=0 Score=28946.34 Aligned_cols=1 Identities=0% Similarity=-0.825 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p 80 (384)
T d1b9ha_ 1 KAPEFPAWPQYDDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVP 80 (384)
T ss_dssp CCCCCCCSSCCCHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 98989898887999999999999739946568989999999999997969399967889999999998499988989981
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~t~~a~~~ai~~~g~~p~~~d~~~~~~~~d~~~~~~~i~~~tk~i~~~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ 160 (384)
T d1b9ha_ 81 AFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIMPVHMAGLMADMDALAKISADTGVPLLQDAAHAH 160 (384)
T ss_dssp SSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEC
T ss_conf 43223221222222233211233444435665441020023332222333322233443110222333356553104033
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ga~~~g~~~g~~g~~~~~Sf~~~K~i~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aai 240 (384)
T d1b9ha_ 161 GARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASV 240 (384)
T ss_dssp TCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHH
T ss_pred CCCCCCEECCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 60048983675520000024555434433431243224999998899985689876666432312356632235301213
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 g~~qL~~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~GI~~~~~y~ 320 (384)
T d1b9ha_ 241 LRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFR 320 (384)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 33343211321123433446666664225666443222222222333310001000222599999999987998553072
Q ss_pred ---------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------8
Q 001511 467 ---------------------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~~ 384 (384)
T d1b9ha_ 321 AIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVARA 384 (384)
T ss_dssp CGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred CHHCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHCEEECCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 2213978885488744433344679899999839798647999998999999999999999609
|
| >d1hn0a1 a.102.3.2 (A:235-618) Chondroitin ABC lyase I {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Chondroitin AC/alginate lyase family: Hyaluronate lyase-like catalytic, N-terminal domain domain: Chondroitin ABC lyase I species: Proteus vulgaris [TaxId: 585]
Probab=100.00 E-value=0 Score=28944.44 Aligned_cols=1 Identities=0% Similarity=-1.622 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~p~~~~T~~~~~~~d~ir~R~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ng~~~g~pi~~~~~~ 80 (384)
T d1hn0a1 1 EPEIQFHNVKPQLPVTPENLAAIDLIRQRLINEFVGGEKETNLALEENISKLKSDFDALNIHTLANGGTQGRHLITDKQI 80 (384)
T ss_dssp CCCCCCCCCSSCCCCCHHHHHHHHHHHHHHHHHHHSSCCCTTCCCCCCHHHHHHHHHTTCCEECTTSCEECCCEECTTGG
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
T ss_conf 98777677899888896788899999999999872688652157777899999999985686456874247755562012
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~aY~~~g~~~~~~el~~~i~~~~d~l~dQg~~~gS~~~~~nww~~~i 160 (384)
T d1hn0a1 81 IIYQPENLNSQDKQLFDNYVILGNYTTLMFNISRAYVLEKDPTQKAQLKQMYLLMTKHLLDQGFVKGSALVTTHHWGYSS 160 (384)
T ss_dssp GGGCGGGSCHHHHHHHTTSEEHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCSTTCCCSCCTTHHHHH
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCEECCCCCCCCCHHHHHH
T ss_conf 20577676533344431266899999999999999747887322399999999999999872320378777673112238
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 r~~~~a~~Lm~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~D~~~t~~~~~l~~~Ll~~d~~e~i~~l~~l~ 240 (384)
T d1hn0a1 161 RWWYISTLLMSDALKEANLQTQVYDSLLWYSREFKSSFDMKVSADSSDLDYFNTLSRQHLALLLLEPDDQKRINLVNTFS 240 (384)
T ss_dssp HHHHHHHHHTHHHHHHTTCHHHHHHHHHHHGGGGHHHHTCCCCTTTTCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 77988999987753226789999999987446864245676677850378999999999999985599199999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~l~~~~~~vt~G~~dGfk~DGS~~qH~~~Y~gYg~~~l~~~~~~~~ll~gT~f~~~~~~~~~l~~~l~~~~~~~~~~~~ 320 (384)
T d1hn0a1 241 HYITGALTQVPPGGKDGLRPDGTAWRHEGNYPGYSFPAFKNASQLIYLLRDTPFSVGESGWNNLKKAMVSAWIYSNPEVG 320 (384)
T ss_dssp HHHHHHHHSCCSTTCSEECTTSCEEETTEECHHHHHHHHHHHHHHHHHHTTSTTCCCHHHHHHHHHHHHHHHHTBSSBBC
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99887750478887886457887550678774269999999999999967998767989999999999999998454466
Q ss_pred ---------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------8
Q 001511 467 ---------------------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~GR~p~~~~~~~~~~~a~~~~al~g~~~~D~~~A~~ylrl~~~~~~~~~~~~~~~~~pa~~ 384 (384)
T d1hn0a1 321 LPLAGRHPFNSPSLKSVAQGYYWLAMSAKSSPDKTLASIYLAISDKTQNESTAIFGETITPASL 384 (384)
T ss_dssp GGGCTTCTTSCCBGGGGHHHHHHHHTTSTTSCCHHHHHHHHHHHTCCHHHHHHHHSSCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCC
T ss_conf 5555777899875543189999997078866799999999987347785416676158787879
|
| >d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=100.00 E-value=0 Score=28944.11 Aligned_cols=1 Identities=0% Similarity=-1.423 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 G~ID~HvH~rePg~~~~~~~ed~~tgs~AAa~GGvTtvi~mp~~~p~~~~~~~~~~~~~~~~~~~a~~~~~vdy~~~~~~ 80 (384)
T d2fvka2 1 GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQTLYCDYGLHLIL 80 (384)
T ss_dssp CEEECCBCCCCTTCTTSCCSCCHHHHHHHHHHTTEEEEEEEEECCTTCCSTTHHHHHHHHHHHHHTTSCCSSEEEEEEEC
T ss_pred CCEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 92538757788999987610329999999980895599989999999997899999999999999734850206578987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~el~~~~~~~~~~~~Gv~~~k~f~~~~~~~~~~~~l~~~l~~~~~~g~~v~~H~Ed~~~~~~~~~~~~~~ 160 (384)
T d2fvka2 81 FQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPGLQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQ 160 (384)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHCCCEEEEESSSTTTBCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHC
T ss_conf 57787661277877678888705575441213325522344779999999999754982451322078898887777655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 g~~~~~~~~~~rP~~aE~~av~r~~~la~~~g~~lhi~HiSt~~~ve~I~~ak~~G~~Vt~Et~ph~L~l~~~~~~~~~~ 240 (384)
T d2fvka2 161 GLTDAYYHGVSRPSIVEGEATNRAITLATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHH 240 (384)
T ss_dssp TCCSTTHHHHTSCHHHHHHHHHHHHHHHHHTTCCEEECSCCCHHHHHHHHHHHHHTCCEEEEECHHHHHCCGGGGSCC--
T ss_pred CCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHHCCCHHHCCCCC
T ss_conf 98774332454453213678999999887519607722335612367899853049978998376776146301024442
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~k~~PPLR~~~dr~aL~~~l~dG~Id~IaSDHaP~~~~eK~~~~~~~~~ 320 (384)
T d2fvka2 241 GEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHRA 320 (384)
T ss_dssp ------CCSCCGGGSSSSTTTCTTCTTGGGGGCCSSCCCCTTSHHHHHHHHHHTSCSEECCCBCCCBSSCCSSTTBGGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCCCCCC
T ss_conf 22111223333222122223554310137516976999987789999977447964279627888788883355333333
Q ss_pred ---------------------------------------------------------------E
Q ss_conf ---------------------------------------------------------------8
Q 001511 467 ---------------------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~~~~~df~~ap~G~~gle~~lpll~~~~v~~~~~~sl~~lv~~~s~nPAki~Gl~p~KGs 384 (384)
T d2fvka2 321 FDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGS 384 (384)
T ss_dssp EEGGGTEESCGGGSCCCBCCTTTHHHHHHHHTTTTTSSSCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 3433345676310999974599899999999986489899999999996999999499998998
|
| >d1vz6a_ d.154.1.2 (A:) Glutamate N-acetyltransferase 2 (ornithine acetyltransferase) {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DmpA/ArgJ-like superfamily: DmpA/ArgJ-like family: ArgJ-like domain: Glutamate N-acetyltransferase 2 (ornithine acetyltransferase) species: Streptomyces clavuligerus [TaxId: 1901]
Probab=100.00 E-value=0 Score=28877.81 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 sPkGf~~~~~~aGiK~~~r~DL~li~~~~~~~~AgvFT~N~~~AApV~~~r~~l~~~~~ravvvNSGnANA~TG~~G~~~ 80 (383)
T d1vz6a_ 1 TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEEN 80 (383)
T ss_dssp CCTTEEEEEECCCSSTTCCCCEEEEEESSCCEEEEEECCCTTCCHHHHHHHHHTTTSBCCEEEEEEEECCCSCHHHHHHH
T ss_pred CCCCEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCEECCCHHHHHHHCCCCCEEEEEECCCHHHHCCHHHHHH
T ss_conf 99859999999536679998689999579976999973687530151998987526884299995374111115888999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 a~~~~~~~A~~l~i~~~~Vl~aSTGVIG~~Lp~~kI~~~i~~l~~~l~~~~~~~AA~AImTTDt~pK~~~i~~~~~~i~G 160 (383)
T d1vz6a_ 81 AREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVRVSVGGATLVG 160 (383)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEEEESSCCCCHHHHHHHHTTCCCCSSSBCHHHHHHHTCSSCSSCEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCEEEE
T ss_conf 99999876553045753145512420101464113344332112232343366544453066420258999720424777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 iaKGsGMI~PnMATML~fi~TDa~i~~~~L~~~l~~~v~~sFN~ItVDGDtSTNDtv~~lAnG~~~~~~~~~f~~aL~~v 240 (383)
T d1vz6a_ 161 IAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGEFEEALHTA 240 (383)
T ss_dssp EEECSSSCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHTGGGBCSSSCCCSSCEEEEEEEEEEEECCHHHHHHHHHHH
T ss_pred EEECCHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 86014320555452478999615567688999999864145000654588887758999845875321078777778899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~LA~~Iv~DGEGATK~i~v~V~gA~s~~dA~~iAr~ia~S~LVKtA~~G~DpNWGRI~aAiG~~~~~~~~d~~~i~i~ 320 (383)
T d1vz6a_ 241 ALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAMAIGKCSDDTDIDQERVTIR 320 (383)
T ss_dssp HHHHHHHHHHTCTTCSSEEEEEEEEESSHHHHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHTCTTCTTCCTTTCEEE
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHEEEE
T ss_conf 99999998636533225899998058999999999999752299998873458847777766423567766662425999
Q ss_pred --------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~v~~~g~~~~~~~~~~~~~~~~~m~~~ei~I~vdL~~G~~~~~~wtcDLt~~YV~INad 383 (383)
T d1vz6a_ 321 FGEVEVYPPKARGDQADDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSE 383 (383)
T ss_dssp ETTEEEECC-------CHHHHHHHHHHTTSSEEEEEEECCSSSEEEEEEEECCCHHHHHHHHC
T ss_pred ECCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCCCHHCCCCC
T ss_conf 899999963667887733559999987457848999997888922899907698322102689
|
| >d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Ammonium transporter superfamily: Ammonium transporter family: Ammonium transporter domain: Ammonium transporter AmtB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28874.06 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~d~~d~~~~l~~~~lV~~m~~~Gf~lle~G~vr~kn~~~~~~k~~~~~~~~~i~~~~~Gy~lafg~~~~~~g~~~~~~ 80 (383)
T d1u7ga_ 1 AVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEGNNFFGNINWLM 80 (383)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSCSSSCCCSTTGG
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCHHH
T ss_conf 97576459999999999999999999998611144889999999999999999886034867868489988677750542
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~~~~~~vy~~~~hwvw~~g~l~~lG~~Dfa 160 (383)
T d1u7ga_ 81 LKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFA 160 (383)
T ss_dssp GTTCCTTCEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHHSSCHHHHHTCCCSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHCCCHHHHEECCCCCCCCCCCEECC
T ss_conf 15765321222211567757633133310231103334665026753045676502156587420488753357863016
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 Gs~vVH~~gG~~aL~~~~~lgpR~~~~~~~~~~~~~~~~~lG~~iLw~gW~gFN~gs~~~~~~~~~~~~~nt~~a~a~~~ 240 (383)
T d1u7ga_ 161 GGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAI 240 (383)
T ss_dssp CTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 74366404209899888753875445656565678146667899999999873445435520588999998776788999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~k~~~~~~~nG~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~G 320 (383)
T d1u7ga_ 241 LGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCG 320 (383)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEHHHHH
T ss_conf 99999998735987799999886545540246755346156899886210778899999986601366465670321368
Q ss_pred --------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 i~G~l~~glfa~~~~~g~~~~~~~~~~~ql~~Ql~g~~v~~~~~~~~~~ii~~il~~~~gLRV 383 (383)
T d1u7ga_ 321 IVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 383 (383)
T ss_dssp HHHHHHHHHHTSGGGTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999988998267444665654541268999999999999999999999999999984728769
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28873.54 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g 80 (383)
T d1bs0a_ 1 SWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSG 80 (383)
T ss_dssp CHHHHHHHHHHHCCGGGCCCCCCCCSBCSSSEEEETTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTC
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 95799999999999819971112457888876998996899987653026678989999999999983898876553467
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~lE~~LA~~~g~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~hnd~~~le~~ 160 (383)
T d1bs0a_ 81 YSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARL 160 (383)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCCCEEECCHHHHHHHHH
T ss_conf 40689999999987519983588604422467778760699866885045528776342357875257340578899998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~ 240 (383)
T d1bs0a_ 161 LASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVS 240 (383)
T ss_dssp HHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSC
T ss_pred HCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 41457774499965787877723315679999886491998303123210377664558771774211245212233465
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~~s~Ii 320 (383)
T d1bs0a_ 241 GAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCSAIQ 320 (383)
T ss_dssp CEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECSCCSSBC
T ss_pred CCCCCCCHHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 54200321677899860446664244320689999999999985025788888888899998788755986579998879
Q ss_pred --------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~v~~g~~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~g 383 (383)
T d1bs0a_ 321 PLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG 383 (383)
T ss_dssp CEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHHC
T ss_pred EEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 999799999999999999789149897489789998459998677799999999999998649
|
| >d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylosinus trichosporium [TaxId: 426]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Ferritin-like superfamily: Ferritin-like family: Ribonucleotide reductase-like domain: Methane monooxygenase hydrolase beta subunit species: Methylosinus trichosporium [TaxId: 426]
Probab=100.00 E-value=0 Score=28872.85 Aligned_cols=1 Identities=0% Similarity=-1.390 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~p~~~~~~~r~~~~f~~p~~rr~seYE~vt~~~Qp~p~~~~~~~~~~~W~~~f~~G~~~y~~~~ 80 (383)
T d1mhyb_ 1 KRGLTDPERAAIIAAAVPDHALDTQRKYHYFIQPRWKPLSEYEQLSCYAQPNPDWIAGGLDWGDWTQKFHGGRPSWGNES 80 (383)
T ss_dssp CCTTTCHHHHHHHHHHSCSSCSCCCCSTTTTSCCSSSSCCHHHHHHTTCSCCBTTSTTCCBCSCCSSCCTTCCCSSCGGG
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 99999745888998616788666677656657868789554444202677985651355654783042079999987553
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 Tai~~~DW~afrDP~q~~yr~Yv~~qaeqe~~v~~~~d~~~~~~~~~~l~p~w~~~~L~~~l~p~r~~E~ga~m~~a~i~ 160 (383)
T d1mhyb_ 81 TELRTTDWYRHRDPARRWHHPYVKDKSEEARYTQRFLAAYSSEGSIRTIDPYWRDEILNKYFGALLYSEYGLFNAHSSVG 160 (383)
T ss_dssp CSCCCSCTTCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGSCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 00143663654580088899999989999999999999999669620089999999999986131089999998889998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 r~a~~~~i~n~~~fqa~DeLR~aQ~l~~~~~~L~~~~~gf~~~~~~~k~~W~~dp~WQ~~R~~vE~~lva~~Dw~E~~vA 240 (383)
T d1mhyb_ 161 RDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIAKLVPGFDASTDVPKKIWTTDPIYSGARATVQEIWQGVQDWNEILWA 240 (383)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHCGGGHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 64675899999999988788899999999999877468987056899889844886899999999887317659999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~NlV~e~ll~~L~~~~f~~~~Aa~nGD~~t~~l~~s~q~D~~R~~~w~~alvk~~l~~d~e~~~~Nr~~lq~Wi~~W~~~ 320 (383)
T d1mhyb_ 241 GHAVYDATFGQFARREFFQRLATVYGDTLTPFFTAQSQTYFQTTRGAIDDLFVYCLANDSEFGAHNRTFLNAWTEHYLAS 320 (383)
T ss_dssp HHHTHHHHHHHHHHTTTHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98879986589999999999999759705699999999899999999999999998469522155899999999999999
Q ss_pred --------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 a~~A~~~l~pi~~~~p~~~~~~~~~~~~~a~~rv~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 383 (383)
T d1mhyb_ 321 SVAALKDFVGLYAKVEKVAGATDSAGVSEALQRVFGDWKIDYADKIGFRVDVDQKVDAVLAGY 383 (383)
T ss_dssp HHHHHHHHGGGGGGSCCCTTTTSHHHHHHHHHHHHHHHHHHTHHHHTCCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
T ss_conf 999999867876047754431105789999999999885433154176546999999986469
|
| >d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SAICAR synthase-like superfamily: SAICAR synthase-like family: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta domain: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28872.22 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~r~~~~l~~~~~~Gi~~sv~~l~~~~~~~~L~~~dF~~~~k~~~~~~~~~~~~~~~~fkfk~Y~P~vF~~lR~~fgi~ 80 (383)
T d1bo1a_ 1 KLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLPSRFKFKEYCPMVFRNLRERFGID 80 (383)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHTTSCCCSSCCGGGGTCEEEEEEECBSSSCSSSCSEEEEEEECHHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECHHHHHHHHHHCCCC
T ss_conf 94410238999999737988875228996000371003445897347777886779887079983799999999981989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~dy~~Sl~~~~~~~~~s~GkSGs~F~~t~D~rfiiKti~~~E~~~l~~~l~~Y~~h~~~~n~~TLL~k~~Gly~i~~~~ 160 (383)
T d1bo1a_ 81 DQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDG 160 (383)
T ss_dssp HHHHHHHHHSSCCEECCCC----CCEEECTTSSEEEECCCHHHHHHHHHHHHHHHHHHHTTTTCCSSCCEEEEEEEEETT
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEEEECC
T ss_conf 89999972788654345657767867880699689998579999999999899999998607875787634303787479
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~lKD~df~~~~~~i~l~~~~k~~l~~ql~~D~~fL~~ 240 (383)
T d1bo1a_ 161 VETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQ 240 (383)
T ss_dssp EEEEEEEEECSSCSSSCCSEEEEECCCSSSSCSCSGGGSSSCCEECHHHHHHTTCCCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf 52799998424567765103676158632567675334555204656778764688230799999999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~imDYSLLvGIh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (383)
T d1bo1a_ 241 LKIMDYSLLVGIHDVDRAEQEEMEVEERAEDEECENDGVGGNLLCSYGTPPDSPGNLLSFPRFFGPGEFDPSVDVYAMKS 320 (383)
T ss_dssp HTCCSCCEEEEEEEHHHHHHHHHHHHHHTTTTC-----------------------------------CCSCCTTTSTTE
T ss_pred CCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78675043675512211112211001124555444555564322345789788302221553346644577765445445
Q ss_pred --------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~~vyyiGIIDiLq~Y~~~KklE~~~Ksl~~~~g~~IS~v~P~~Ya~RF~~Fi~~I~~ 383 (383)
T d1bo1a_ 321 HESSPKKEVYFMAIIDILTPYDTKKKAAHAAKTVKHGAGAEISTVNPEQYSKRFNEFMSNILT 383 (383)
T ss_dssp EECSSTTEEEEEEECCSCC------------------CCCSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 678997599999999715779689999999999211889896127989999999999998649
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28871.66 Aligned_cols=1 Identities=0% Similarity=-1.290 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~ 80 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVNEV 80 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEEECCCS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCEEECCCEEECCCCHHHHHHHHHCCCCCEECCCC
T ss_conf 98998978899999999986899789993499874506688778982895776696798769999999859962222676
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (383)
T d2v5za1 81 ERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLA 160 (383)
T ss_dssp SEEEEEETTEEEEECSSSCCCCSHHHHHHHHHHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSHHHHHHH
T ss_pred CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 63477347643223444200011444554899999999866430011321013455544667999998704626778888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~i~~~~~v~~I~~~~~~v 240 (383)
T d2v5za1 161 TLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENV 240 (383)
T ss_dssp HHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHHHGGGEEESCCEEEEECSSSSE
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCEEEECCCCEEEEECCCEE
T ss_conf 87654220246302467889999886132212333246762133144154999999987598499368606899609969
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~ 320 (383)
T d2v5za1 241 LVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYME 320 (383)
T ss_dssp EEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTTHHHHHGGGTTCCBTTEEECSGGGCSSSTTSHH
T ss_pred EEEECCCCEEECCEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCHH
T ss_conf 99988997898799998989899951824899999999999975447754401354408768668556653466775067
Q ss_pred --------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ga~~~g~~~a~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~P~~p~~~~~i~~~~ 383 (383)
T d2v5za1 321 GAVEAGERAAREILHAMGKIPEDEIWQSEPESVDVPAQPITTTFLERHLPSVPGLLRLIGLTT 383 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCGGGSSCCCCCCSSSCCCCCCCCHHHHHCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC
T ss_conf 899987999999999862588044302484224655454545605224999987403167779
|
| >d1imva_ e.1.1.1 (A:) Pigment epithelium-derived factor, PEDF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Pigment epithelium-derived factor, PEDF species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28868.27 Aligned_cols=1 Identities=0% Similarity=-0.626 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~L~~~l~~~~~~~Niv~SP~si~~~L~~l~~Ga~g~T~~el~~~L~~~~~~~ 80 (383)
T d1imva_ 1 TGALVEEEDPFFKVPVNKLAAAVSNFGYDLYRVRSSMSPTTNVLLSPLSVATALSALSLGADERTESIIHRALYYDLISS 80 (383)
T ss_dssp CCCCCCCCSHHHHSHHHHHHHHHHHHHHHHHHHHHHHCTTSCEEECHHHHHHHHHHHGGGCCHHHHHHHHHHTTGGGCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCH
T ss_conf 99866554754458289999999999999999985129698199888999999999998647399999999738999984
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~l~~~~~~~~~~l~~~n~i~v~~~~~~~~~f~~~~~~~y~~~~~~~~~~~~~~~~~IN~wv~~~T~g~I~~~ 160 (383)
T d1imva_ 81 PDIHGTYKELLDTVTAPQKNLKSASRIVFEKKLRIKSSFVAPLEKSYGTRPRVLTGNPRLDLQEINNWVQAQMKGKLARS 160 (383)
T ss_dssp SCHHHHHHHHHHHHTSTTSCEEEEEEEEECTTCCCCHHHHHHHHHHHCCCCEECCSCHHHHHHHHHHHHHHHTTTCSCCC
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 89999999998750067763677877886168741668888887623764664354479999999999985075620364
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~t~~~lvna~~fk~~W~~~F~~~~t~~~~F~~~~~~~~~V~mM~~~~~~~~~~~~~~~~~~vv~lp~~~~~sm~ 240 (383)
T d1imva_ 161 TKEIPDEISILLLGVAHFKGQWVTKFDSRKTSLEDFYLDEERTVRVPMMSDPKAVLRYGLDSDLSCKIAQLPLTGSMSII 240 (383)
T ss_dssp CSCCCSSCSEEEEEEEEEECCEEECCCGGGCEEEEEESSSSCEEEEEEEEEEEEEEEEEEETTTTEEEEEEEETTTEEEE
T ss_pred CCCCCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCEEEE
T ss_conf 33438665124311104423202556533454464234798479830211245514566516655389994137973899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 iiLP~~~~~~l~~l~~~l~~~~l~~~~~~~~~~~v~v~lPkF~i~~~~dL~~~L~~lGl~~~F~~adfs~is~~~l~vs~ 320 (383)
T d1imva_ 241 FFLPLKVTQNLTLIEESLTSEFIHDIDRELKTVQAVLTVPKLKLSYEGEVTKSLQEMKLQSLFDSPDFSKITGKPIKLTQ 320 (383)
T ss_dssp EEEESSCCSCCHHHHTTCCHHHHHHHHHHCEEEEEEEEEECEEEEEEEECHHHHHTTTTTHHHHSCCCTTTCSSCCCEEE
T ss_pred EEEECCCCCCHHHHHHHCCHHHHHHHHHHCCCEEEEEEECEEEEEEECCHHHHHHHCCHHHHCCCCCCCCCCCCCCEEEE
T ss_conf 99962667886787664068899998750642279995021887540246675431343330345674556799947445
Q ss_pred --------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 v~hka~ieVdE~G~~a~a~t~~~~~~~~~~~~f~~drPF~f~I~~~~t~~iLF~G~v~~P~~~ 383 (383)
T d1imva_ 321 VEHRAGFEWNEDGAGTTPSPGLQPAHLTFPLDYHLNQPFIFVLRDTDTGALLFIGKILDPRGP 383 (383)
T ss_dssp EEEEEEEEECSCEEECC--------CCCCCCEEECCSCEEEEEEETTTCCEEEEEEESCTTCC
T ss_pred EEEEEEEEECCCCCCCCCCCCEECCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 789999999888611132222101567899679911999999999999968999995289997
|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28866.78 Aligned_cols=1 Identities=0% Similarity=1.832 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~P~GL~N~GNtCY~NSvLQ~L~~ip~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~p~~~~~~l~ 80 (383)
T d2ayna1 1 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLH 80 (383)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEECCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 98995858898406999999999766999999985145315777645277999999999999865898457799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~QqDa~Ef~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~~~c~~c 160 (383)
T d2ayna1 81 MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTES 160 (383)
T ss_dssp HHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESSS
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCEEEEEEEEEEEEEEEECCC
T ss_conf 97376502555672245439999998788999998753203644211101211124667872054022899988883578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~l~L~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~ 240 (383)
T d2ayna1 161 EEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVN 240 (383)
T ss_dssp CCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTEECCCCEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSC
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEECCCEEECCCCCCE
T ss_conf 96551002231323210221010013456665201100124532376401202346502341453410220120567621
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~K~~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L 320 (383)
T d2ayna1 241 AKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDL 320 (383)
T ss_dssp CBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCCSEEEE
T ss_pred EECCCEECCCCEEECHHHCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 33584774687664432146033013321024554432211013667554434542222236533344446789951999
Q ss_pred --------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~avi~H~G~s~~~GHY~a~vk~~~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~aYiLfY~r~ 383 (383)
T d2ayna1 321 QAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPR 383 (383)
T ss_dssp EEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC
T ss_pred EEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCEEEECHHHHHHHHCCCCCCCEEEEEEEEC
T ss_conf 999999789999977089999999928999899508937999977527998893699999879
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=0 Score=28865.52 Aligned_cols=1 Identities=0% Similarity=-0.825 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (383)
T d1gy8a_ 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (383)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCC
T ss_conf 96979995787689999999999828998999826876555300133566677776541133332235541799784568
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 160 (383)
T d1gy8a_ 81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA 160 (383)
T ss_dssp HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred HHHHHHHHHCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78866666224012043232443222223222233134554442232001110477533333332222334433222222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~~~ 240 (383)
T d1gy8a_ 161 EPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQ 240 (383)
T ss_dssp CCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC-
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 22123357899988886676799999999998599779971230515676666555666510027999999986103454
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~~el~~~ 320 (383)
T d1gy8a_ 241 RLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEV 320 (383)
T ss_dssp ----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHHHHH
T ss_pred CCHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEHHHHHHH
T ss_conf 20123333037835873785546899747856888999999999986402221111346753899689996359999999
Q ss_pred --------------------------------------------------------------E
Q ss_conf --------------------------------------------------------------8
Q 001511 467 --------------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 i~~~~~~~~~~~~~~~~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~~~~~~~~ 383 (383)
T d1gy8a_ 321 ARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHPNGYA 383 (383)
T ss_dssp HHHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCTTTTC
T ss_pred HHHHHCCCCCEEECCCCCCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999869997648899999986785357899999879966787999999999999986800489
|
| >d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: Choline/Carnitine O-acyltransferase domain: Choline O-acetyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=0 Score=28792.41 Aligned_cols=1 Identities=0% Similarity=-1.622 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 e~~LP~LPvP~L~~Tl~ryL~s~~Pl~s~ee~~~t~~~v~~F~~~~g~G~~Lq~~L~~~~~~~~nwl~~~W~~~~YL~~R 80 (382)
T d1t1ua1 1 ELDLPKLPVPPLQQTLATYLQCMQHLVPEEQFRKSQAIVKRFGAPGGLGETLQEKLLERQEKTANWVSEYWLNDMYLNNR 80 (382)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHHHSSSTTHHHHHHHHTTTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC
T ss_conf 99998899999999999999985445999999999999999751698179999999987446878607778765016788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~pL~~~~n~~~~~~~~~~~~~~~q~~rAA~l~~~~l~f~~~l~~~~l~~~~~~~~~~~~plcM~qy~~lF~t~RiP~~~~ 160 (382)
T d1t1ua1 81 LALPVNSSPAVIFARQHFQDTNDQLRFAACLISGVLSYKTLLDSHSLPTDWAKGQLSGQPLCMKQYYRLFSSYRLPGHTQ 160 (382)
T ss_dssp SCHHHHTCCEEEECCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTCSCCTTSSSCCSSSCCCCTTGGGTTTEEEECCSSS
T ss_pred CCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCHHHHHHHCCCEECCCCCC
T ss_conf 78650056612105666876037999999999999999999756656861210224898667899998728670568998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 D~l~~~~~~~~~~~~HIvVl~~g~~y~v~v~~~~~~l~~~ei~~~l~~I~~~~~~~~~~~~~ig~LT~~~Rd~Wa~~r~~ 240 (382)
T d1t1ua1 161 DTLVAQKSSIMPEPEHVIVACCNQFFVLDVVINFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTV 240 (382)
T ss_dssp CEEEECCCSSSSCCCEEEEEETTEEEEEESEETTEECCHHHHHHHHHHHHHHHTCSTTCCCCGGGGGGSCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCCEEEEEECCEEEEEEEEECCEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 74665576778898779999899899999998990688999999999999624455556888450555871999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 L~~~~~N~~~L~~Ie~alfvv~LDd~~~~~~~e~~~~~~~l~g~~~~~~~~NRW~DKslq~IV~~nG~~g~~~EHS~~DG 320 (382)
T d1t1ua1 241 LLKDSTNRDSLDMIERCICLVCLDGPGTGELSDTHRALQLLHGGGCSLNGANRWYDKSLQFVVGRDGTCGVVCEHSPFDG 320 (382)
T ss_dssp HTTSHHHHHHHHHHHTCSCEEEECCCCSSCCCHHHHHHHHHHTTSTTTTTTSCCTTBSEEEEECTTSCEEEEECSTTCCH
T ss_pred HHCCCCHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCH
T ss_conf 85596158999999866489992799988701689999986178778998610677873799978986898504676249
Q ss_pred -------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~L~f~l~~~~~~~I~~a~~~~~~~~~dl 382 (382)
T d1t1ua1 321 IVLVQCTEHLLKHMMTSNKKLVRADSVSELPAPRRLRWKCSPETQGHLASSAEKLQRIVKNL 382 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTSCSSSCSCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998640677888887778999658788658899999999999999997349
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=28793.58 Aligned_cols=1 Identities=100% Similarity=0.371 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~l~~PGP~~v~~~V~~Am~~~~~~hr~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~ 80 (382)
T d2bkwa1 1 KSVDTLLIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILS 80 (382)
T ss_dssp CCCCEECSSSSCCCCHHHHHTTSCCCCCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 98656427899788799999727326897769999999999999999985334898719999386899999999998876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~ 160 (382)
T d2bkwa1 81 KAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQA 160 (382)
T ss_dssp TCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHH
T ss_pred CCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHEEEEECCCCCCCCCCCHHHHHH
T ss_conf 07998248997312334434311100133333223677775641579998630110100232112246302441233332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (382)
T d2bkwa1 161 IKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWT 240 (382)
T ss_dssp HHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 01334310256302455322123233557569950566667689750255405999864331035888663011122100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~ 320 (382)
T d2bkwa1 241 PIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVY 320 (382)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEE
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCEEEEC
T ss_conf 23311345556535677577789999999999876324557999999999999764115532234683011587379970
Q ss_pred -------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~~~ 382 (382)
T d2bkwa1 321 VADPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQRK 382 (382)
T ss_dssp CSCHHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC-
T ss_pred CCCHHHHHHHHHHCCEEEECCCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89989999999978939977877311699899858868997999999999999999997739
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28792.26 Aligned_cols=1 Identities=0% Similarity=-1.457 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~ 80 (382)
T d1u08a_ 1 PLIPQSKLPQLGTTIFTQMSALAQQHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLY 80 (382)
T ss_dssp CCCCCCSCCCCCCCHHHHHHHHHHHTTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHCCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98824547799986999999996269978854988999778999999999985599889898677999999999999984
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 160 (382)
T d1u08a_ 81 GYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERT 160 (382)
T ss_dssp SCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTE
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 99988772378646358889998751035640599731443213455443133200012214335689999731213574
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~R 240 (382)
T d1u08a_ 161 RLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWK 240 (382)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGC
T ss_pred CEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
T ss_conf 08998798765454565332012332210243202430320210343345542000123468579985035521478665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 iG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~gg~~~~~ 320 (382)
T d1u08a_ 241 VGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLV 320 (382)
T ss_dssp CEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEEE
T ss_pred CHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEE
T ss_conf 11010210137888752022323456433322333222206777789999876300002232037857956894679989
Q ss_pred -------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~~~e~l~~al~RL~~l 382 (382)
T d1u08a_ 321 DYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQL 382 (382)
T ss_dssp ECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTTC
T ss_pred ECCCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHCC
T ss_conf 56888999999999999997999998224527899989889999809999999999998179
|
| >d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=0 Score=28791.52 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (382)
T d1wkva1 1 ALADISGYLDVLDSVRGFSYLENAREVLRSGEARCLGNPRSEPEYVKALYVIGASRIPVGDGCSHTLEELGVFDISVPGE 80 (382)
T ss_dssp CEEEGGGGTTHHHHCCSSTTHHHHHHHHHHTEEECBSSGGGCHHHHHHHHHHTCSEEEBSSSCEEETTTTTTTCCCSCTT
T ss_pred CCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCEECCCCCC
T ss_conf 96421015677775324278999999986035030579975478999999844553556776531166526210489854
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~l~~~~~~~PTPLvrl~l~~~~G~~IylKlE~~NPtGgSfKdR~A~~~i~~A~~~~~~g~~VVeaSSGN~GiAlA 160 (382)
T d1wkva1 81 MVFPSPLDFFERGKPTPLVRSRLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKGSLVADATSSNFGVALS 160 (382)
T ss_dssp CEESSHHHHHHHSCSCCEEECCCCCSTTEEEEEEEGGGSTTTSBTTHHHHHHHHHHHTTTSCTTCEEEEECCHHHHHHHH
T ss_pred EEECCHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHH
T ss_conf 67579899856899998777877888898999985478999876299999999999985268999999858759999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeVi~~~~~~~~~~~~~~a~~~a~~~~~~~~~q~~N~~~~~~h~~ttg~E 240 (382)
T d1wkva1 161 AVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNEGFVHVNQFYNDANFEAHMRGTARE 240 (382)
T ss_dssp HHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEETTCSSSGGGHHHHHHHHHHHCCEECCTTTCHHHHHHHHHTHHHH
T ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHCCHHH
T ss_conf 99998499779996200112222222356861154375105679999876520245754332345430232112112178
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 I~eQl~~~~~~~d~vv~~vGtGG~~~Gi~~~lk~~~p~vkiigVep~~~~~i~g~~~i~~g~~~~~~~d~~~~i~~Vsd~ 320 (382)
T d1wkva1 241 IFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVETGMLWINMLDISYTLAEVTLE 320 (382)
T ss_dssp HHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCTTCCCGGGCCSHHHHSCCCCEEEEECHH
T ss_pred HHHHHHCCCCCEEEEEEECCCCCCCCCCEEEHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHH
T ss_conf 99996467873167897416654233320101231876623675244444445641024576575646644299997999
Q ss_pred -------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 Eai~a~r~La~~EGI~vgpSSGaavaaa~k~a~~~~~~~~~vVvIlcD~G~rYlstiyN~~~ 382 (382)
T d1wkva1 321 EAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKYLSLVQNALE 382 (382)
T ss_dssp HHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTTCSCSEEEEEEECBBGGGCHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCC
T ss_conf 99999999999819888189999999999998640689998999988897432676426789
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=28790.90 Aligned_cols=1 Identities=0% Similarity=0.237 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~r~~~~~~s~~~~i~~~a~~~~~~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~ 80 (382)
T d1b5pa_ 1 MRGLSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEK 80 (382)
T ss_dssp CCCCCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 93788999848988899999999999967998289999989999889999999999865886899987889999999764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 160 (382)
T d1b5pa_ 81 FRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRA 160 (382)
T ss_dssp HHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTT
T ss_pred HHHHCCCCCCCCCCEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 44303411265534056778999999999967997989987998477999999845847998554101458999999973
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G 240 (382)
T d1b5pa_ 161 ITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTG 240 (382)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGG
T ss_pred CCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHHHHCCEEEEEECCCCCEECCCCCCCHHHCCCCCEEEEECCHHHCCCCH
T ss_conf 78897699989997976600799999999999998590899976641232178988887818997799946346451807
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 lR~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~gg 320 (382)
T d1b5pa_ 241 WRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGA 320 (382)
T ss_dssp GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBT
T ss_pred HHEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCE
T ss_conf 56699998999999999998750357653222222222233121157899999999862267898876449767568941
Q ss_pred -------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 321 FYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVL 382 (382)
T ss_dssp TEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred EEEEEECCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 79968578999999999999997897999572258999699997499999999999999869
|
| >d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
Probab=100.00 E-value=0 Score=28789.06 Aligned_cols=1 Identities=0% Similarity=0.304 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
|
T Consensus 1 ~~~p~W~~~~v~Y~i~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~~gi~~kLdylk~LGv~~i~l~Pi~~~~~~~ 80 (382)
T d1ea9c3 1 FQPPAWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLGVNAVYFTPLFKATTNH 80 (382)
T ss_dssp CCCCTHHHHCCCCEECSTTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCHHHHHHTHHHHHHHTCSEEEECCCSSCSSSS
T ss_pred CCCCCCCCCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf 97986023886999971220379988786676434555777676678189999985699986799889969770178877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 gY~~~~~~~id~~~Gt~~df~~lv~~~h~~gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (382)
T d1ea9c3 81 KYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIP 160 (382)
T ss_dssp TTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCCTTTHHHHHHHTTTTTCTTTTSSCBCSSSCCCTTSCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 87754453544366777899999999986264378763013441348325556406876544430013464432235763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~d~n~~~~~v~~~l~~~~~~w~~~~gvDGfR~Da~~~~~~~~~~~~~~~~~~~~p~~~~~~e~~~~~~~ 240 (382)
T d1ea9c3 161 TYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWREFRRVVKQANPDAYILGEVWHESSI 240 (382)
T ss_dssp SBCBSSSCTTSBBCCTTSHHHHHHHHHHHHHHHHHHCCSEEEETTCTTSCHHHHHHHHHHHHHHCTTCEEEECCCSCCTT
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 22233344345742301388999999987515653146678743620076566545666554008981588543145532
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nHD~~r~~~~~~~~~~~~~~a~~ 320 (382)
T d1ea9c3 241 WLEGDQFDAVMNYPFTNAVLDFFIHQIADAEKFSFMLGKQLAGYPRQASEVMFNLLDSHDTARLLTQADGDKRKMKLAVL 320 (382)
T ss_dssp TTTTTSCSEEBCHHHHHHHHHHTTSCCSCHHHHHHHHHHTTTTSCHHHHHTCEECSCCTTSCCHHHHHCSCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 13676432212343004667655046421567899999999854020654405520367666312246787999999999
Q ss_pred -------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~l~~pG~P~Iy~G~E~g~~~~~~~~~r~~~~w~~~~~~~~l~~~~~~L~~lR~~~paL~~G 382 (382)
T d1ea9c3 321 FQFTYFGTPCIYYGDEVGLDGGHDPGCRKCMEWDETKHDKDLFAFYQTVIRLRQAHAALRTG 382 (382)
T ss_dssp HHTTSSSEECCCSSCSSCCCCCSHHHHTCCCCCCTTSCCHHHHHHHHHHHHHHHHCSHHHHC
T ss_pred HHHHCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCC
T ss_conf 99971798787755754888999977648878877765389999999999999568975189
|
| >d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: Choline/Carnitine O-acyltransferase domain: Peroxisomal carnitine O-octanoyltransferase, COT species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=28795.20 Aligned_cols=1 Identities=0% Similarity=-0.891 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 e~Tf~~q~~LP~LPvP~Le~Tl~ryL~s~~pl~~~~e~~~t~~~v~~F~~~~G~~Lq~~L~e~a~~~~NWl~~~W~~~~Y 80 (382)
T d1xl7a1 1 ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAY 80 (382)
T ss_dssp CCTTTTGGGCCCCCCCCHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCTTSSHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 96431427799898999899999999986566999999999999999974939999999998740698850587867753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 L~~R~pl~~~~n~~~~~~~~~~~~~~~~~~q~~raA~l~~~~~~f~~~l~~~~l~~~~~~~~plcm~qy~~lF~t~RiPg 160 (382)
T d1xl7a1 81 LDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPG 160 (382)
T ss_dssp TSCCSCHHHHTCEEEECGGGGTTCCCCTTCHHHHHHHHHHHHHHHHHHHHTTCSCCCEETTEECCCGGGGGTSSEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCEEECHHHHHHHCCCEECCC
T ss_conf 25577864555666766556777885500699999999999999998740365471230998760799997612771689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~D~~~~~~~~~~~~~~~~HIvVl~~g~~ykv~v~~~~~~~s~~el~~~l~~I~~~~~~~~~~~~vg~LTt~~Rd~WA~ 240 (382)
T d1xl7a1 161 ITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAK 240 (382)
T ss_dssp SSCCEEEECCCCTTTCCCCCEEEEEETTEEEEEESEETTEECCHHHHHHHHHHHHHHHHTSCCCCCGGGGGGSCHHHHHH
T ss_pred CCCCCEEECCCCCCCCCCCCEEEEEECCCEEEEEEEECCEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 98772002355556789886699997893089999329908889999999999997354678887755067656479999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~R~~L~~~~~~N~~~L~~Ie~AlfvvcLD~~~~~~~~e~~~~~~~~~l~G~~~NRW~DKs~q~IV~~nG~~G~~~EHS~~ 320 (382)
T d1xl7a1 241 AREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPY 320 (382)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHSSCEEEECCCCCCCCSSCCHHHHHHHHSSCGGGCCTTBSCEEEECTTSCEEEEECSSSC
T ss_pred HHHHHHHCCHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCH
T ss_conf 99997617842699999987446888613568889858999999963859873327766713899689888987368716
Q ss_pred -------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 DG~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~p~~L~f~l~~~i~~~I~~A~~~~~k~as 382 (382)
T d1xl7a1 321 DAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAAS 382 (382)
T ss_dssp CTHHHHHHHHHHHHHHHHTTTCCCSCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf 69999999999999976127878888887789997577896698999999999999998509
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=100.00 E-value=0 Score=28791.56 Aligned_cols=1 Identities=0% Similarity=1.500 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~P~w~~~~viY~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kLdyl~~lGi~~I~l~Pv~~~~~ 80 (382)
T d1wzla3 1 VFTTPEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFASPS 80 (382)
T ss_dssp SCCCCSGGGGCCEEEECGGGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSS
T ss_pred CCCCCCCCCCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 97998420288799997024137998778766643344566655777785899999831999977997899798677875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~gY~~~~~~~vd~~~Gt~~d~~~lv~~~H~~Gi~vilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (382)
T d1wzla3 81 HHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR 160 (382)
T ss_dssp SSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSC
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 45776556320236788788999999999752451576321013333333331001037654246643003654566789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~dLn~~n~~v~~~~~~~~~~w~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~~i~e~~~~~~ 240 (382)
T d1wzla3 161 TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWMEQGIDGWRLDVANEVDHAFWREFRRLVKSLNPDALIVGEIWHDAS 240 (382)
T ss_dssp CSBCBSSSSCTTCBBBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECCSSCCG
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 74444344556678507799999999999999999758875034334335645556789998752884478620035652
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~ 320 (382)
T d1wzla3 241 GWLMGDQFDSVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRLAV 320 (382)
T ss_dssp GGCSSSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHTTSCHHHHTTCEEESCCTTSCCHHHHTTTCHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHCCCCHHHHHHHH
T ss_conf 02203342023302677899986514764314678888753201643245663123058775536765389799999999
Q ss_pred -------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~llt~pG~P~iy~G~E~g~~g~~~~~~r~~~~W~~~~~~~~l~~~~~~L~~lR~~~paL~r 382 (382)
T d1wzla3 321 LFQMTYLGTPLIYYGDEIGMAGATDPDCLRPMIWEEKEQNRGLFEFYKELIRLRHRLASLTR 382 (382)
T ss_dssp HHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCGGGSCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHCC
T ss_conf 99998089878973730277899995445788988655570899999999999830986488
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=28792.23 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~P~w~~~~viY~v~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kldyl~~LGv~~i~L~Pi~~~~~ 80 (382)
T d1j0ha3 1 DLFEAPDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLGITGIYLTPIFRSPS 80 (382)
T ss_dssp GSCCCCGGGGGCCEEEECGGGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSS
T ss_pred CCCCCCCCHHCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 98899964107779999755312799887766665345557766766785899999867999976998899698876876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~gy~~~d~~~vd~~~Gt~~~~~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (382)
T d1j0ha3 81 NHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPR 160 (382)
T ss_dssp SSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSS
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 56877565643278879979999999986423643787752102333344312220368745557742224566545663
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~dln~~n~~vr~~l~~~~~~wi~~~giDGfR~Da~~~~~~~~~~~~~~~~~~~~p~~~~i~e~~~~~~ 240 (382)
T d1j0ha3 161 PNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQEVKALKPDVYILGEIWHDAM 240 (382)
T ss_dssp CSBCBSTTCTTSBBBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECCSSCCG
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf 23332356777764440769999999998886766441157984453216645534444433202898522343234512
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~R~~~~~~~~~~~~~~a~ 320 (382)
T d1j0ha3 241 PWLRGDQFDAVMNYPFTDGVLRFFAKEEISARQFANQMMHVLHSYPNNVNEAAFNLLGSHDTSRILTVCGGDIRKVKLLF 320 (382)
T ss_dssp GGCSSSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTSCHHHHHTCBCBSCCTTSCCHHHHTTTCHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 34213554410155310456654303543201221022210113654467662320467777741213488599999999
Q ss_pred -------------------------------------------------------------E
Q ss_conf -------------------------------------------------------------8
Q 001511 467 -------------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~lllt~pG~P~iy~G~E~G~~~~~~~~~r~~~~W~~~~~~~~l~~~~k~L~~lR~~~paL~r 382 (382)
T d1j0ha3 321 LFQLTFTGSPCIYYGDEIGMTGGNDPECRKCMVWDPMQQNKELHQHVKQLIALRKQYRSLRR 382 (382)
T ss_dssp HHHHHSSSCCEEETTGGGTCCCCSTTGGGCCCCCCTTTSCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCC
T ss_conf 99998179888986863286899880103577888654576999999999999842997586
|
| >d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: MGS-like domain: Mannosylglycerate synthase, MGS species: Rhodothermus marinus [TaxId: 29549]
Probab=100.00 E-value=0 Score=28715.94 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 slVVIP~~NEe~~il~~~v~~~a~~P~~~eIvVvDdsSdDtt~~i~~~~~~~~~~~~~~v~~~~~~~l~~~~~GKG~g~~ 80 (381)
T d2bo4a1 1 SLVVFPFKHEHPEVLLHNVRVAAAHPRVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMN 80 (381)
T ss_dssp CEEEEECCSSCHHHHHHHHHHHHHSTTCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCHHHH
T ss_conf 98999727885889999999997589814999986999875999999852300113321001110023546578848899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~A~~~g~~~a~gd~lvflDADl~~~~pe~i~~L~~~i~~g~d~V~g~y~R~~~~grvt~~l~~pll~~l~~~~~~~~i~d 160 (381)
T d2bo4a1 81 TALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADFGYGLVRHYFPRASTDAMITWMITRTGFALLWPHTELSWIEQ 160 (381)
T ss_dssp HHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHTHHHHHHHHCTTSSGGGCSC
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999997088888999758767677999999999876305758986314567882236755899999860201565054
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 Pl~G~~a~~R~~~~~L~~~~~v~~~~~~G~Di~lt~~A~~~G~rI~EV~i~~~~l~~~f~~v~~~~f~l~~~~~~~W~~~ 240 (381)
T d2bo4a1 161 PLGGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQGVSIYECYIPEGKAHRLYGGLDDLRTMLVECFAAIQSLQ 240 (381)
T ss_dssp TTCCCEEEEHHHHHHHHHCHHHHTCCSTTHHHHHHHHHHHTTCCEEEEECTTCCCCCCSCCGGGGHHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
T ss_conf 77610104099999862434556567866244999999985974784478778777899999999999999987782363
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~p~~~~g~~~~~~p~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (381)
T d2bo4a1 241 HEVVGQPAIHRQEHPHRVPVHIAERVGYDVEATLHRLMQHWTPRQVELLELFTTPVREGLRTCQRRPAFNFMDEMAWAAT 320 (381)
T ss_dssp TCCCCSCCCEEECCCCCCCHHHHTCCCSCHHHHHHHHTSSCCHHHHHHGGGSCHHHHHHHHHTTTSCCCTTCCHHHHHHH
T ss_pred CEECCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 33322012022557445888888752047999999999755777999998569988888987444664778767999999
Q ss_pred ------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (381)
T d2bo4a1 321 YHVLLEHFQPGDPDWEELLFKLWTTRVLNYTMTVALRGYDYAQQYLYRMLGRYRYQAALEN 381 (381)
T ss_dssp HHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999997301460688871056889999999999976079899999999877787876249
|
| >d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Xylanase inhibitor TAXI-I species: Wheat (Triticum aestivum) [TaxId: 4565]
Probab=100.00 E-value=0 Score=28711.77 Aligned_cols=1 Identities=100% Similarity=0.636 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~pi~~~~~~~~Y~~~i~iGtpliiDTGSs~~Wvpc~~c~~~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~ 80 (381)
T d1t6ex_ 1 LPVLAPVTKDPATSLYTIPFHDGASLVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGCPAPSCGSDKHDKPC 80 (381)
T ss_dssp CCEEEEEEECTTTCCEEEEEETTEEEEEETTCCCEEECCCTTCCCCCCBTTSHHHHHHHSSCCTTCCCCCC------CBC
T ss_pred CCEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98798112269988599999769866998998811460678877766562780264235757888887666678778888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~Y~~Gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGi~Glg~~~~s~~~ql~~~~~~ 160 (381)
T d1t6ex_ 81 TAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKV 160 (381)
T ss_dssp EECCBCTTTCCBCCEEEEEEEEEEEEESSSSEEEEEEEEEEEEECCGGGGTTSCTTEEEEEECSSSTTSHHHHHHHHHTC
T ss_pred CEEEEEECCCCEEEEEEEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCC
T ss_conf 60677838998888799999999653223552025885112202435665444667630210588873157887651376
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~fsl~l~~~~~~~~~~~~g~~~~~~~~g~~~~~pi~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~i~DTGtt~ 240 (381)
T d1t6ex_ 161 ANRFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPY 240 (381)
T ss_dssp CSEEEEECCSSSCEEEEESCCSCSCHHHHTTCCEEECBCCTTCCSCEECEEEEEETTEECCCCTTCSCTTCEEECSSCSS
T ss_pred CEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEEECCEEECCCCCCCCCCCEEEECCCCE
T ss_conf 44899554777654237603656633357833777654157874257888778518846615755456763687427734
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~f~~~~~~~i~~~~y~~~ 320 (381)
T d1t6ex_ 241 VLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVD 320 (381)
T ss_dssp EEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEETTEECCCCEEEEETTSCEEEECHHHHEEE
T ss_pred EECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCEEEECHHHEEEE
T ss_conf 97778999999999988751445664211101466677522622565555565431461799975996799770473899
Q ss_pred ------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~~Cl~i~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfA~~~~~~~~~~~ 381 (381)
T d1t6ex_ 321 VKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLPHFTGCGGL 381 (381)
T ss_dssp EETTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEECCTTCCSCC-
T ss_pred ECCCCEEEEEEECCCCCCCCCCCCCEEECHHHHCCEEEEEECCCCEEEEEECCCCCCCCCC
T ss_conf 0798489999832556677888973898979848689999899999999877888887688
|
| >d1by7a_ e.1.1.1 (A:) Plasminogen activator inhibitor-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Plasminogen activator inhibitor-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28715.89 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~l~~~~~~Fa~~L~~~l~~~~~~~N~v~SP~si~~~L~~l~~Ga~g~T~~el~~~L~~~~~~~~~~~~~~~~~~l~~~l 80 (381)
T d1by7a_ 1 EDLCVANTLFALNLFKHLAKASPTQNLFLSPWSISSTMAMVYMGSRGSTEDQMAKVLQFNEVGAAADKIHSSFRSLSSAI 80 (381)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSSSSCEEECHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTCCG-GGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 90778999999999999873098985998789999999999986664999999997089987888999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~df~~~~~~a~~~IN~wv~~~T~g~I~~~~~~~~l~~~t 160 (381)
T d1by7a_ 81 NASTGNYLLESVNKLFGEKSASFREEYIRLCQKYYSSEPQAVDFLECAEEARKKINSWVKTQTKGKIPNLLPEGSVDGDT 160 (381)
T ss_dssp C------CEEEEEEEEEETTSCBCHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHTTTSCTTSSCTTSCCTTC
T ss_pred HCCCCCCEEEECCCHHCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 56798847866000000368732889999999861773020443212599999999999975247754567855679731
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~lvna~~fk~~W~~~F~~~~t~~~~F~~~~~~~~~V~mm~~~~~~~~~~~~~~~~~~v~lp~~~~~~m~iilp~~~~~ 240 (381)
T d1by7a_ 161 RMVLVNAVYFKGKWKTPFEKKLNGLYPFRVNSAQRTPVQMMYLREKLNIGYIEDLKAQILELPYAGDVSMFLLLPDEIAD 240 (381)
T ss_dssp CEEEEEEEEECCCBSSCCEECC---EEEEEETTEEEEECEEEEEEEEEEEEETTTTEEEEEEEETTTEEEEEEEESSCCS
T ss_pred HHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 75611244774211578752356555333689805899516651555543136767499996147970799996277665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~v~lPkF~i~~~~dl~~~L~~lGi~~~F~~~~Adfs~is~~~~l~vs~i 320 (381)
T d1by7a_ 241 VSTGLELLESEITYDKLNKWTSKDKMAEDEVEVYIPQFKLEEHYELRSILRSMGMEDAFNKGRANFSGMSERNDLFLSEV 320 (381)
T ss_dssp SSSSCHHHHHHCCHHHHHHHTSTTTEEEEEEEEEEECEEEEEEEECHHHHHHTTCCGGGCTTTCCCTTTBSCSCCCCCEE
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCEEEEE
T ss_conf 35666776642258899987512114340489965648997550569999856851120445454445678898157667
Q ss_pred ------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------~ 467 (1064)
=
T Consensus 321 ~q~~~ieVdE~Gt~aaa~t~~~~~~~~~~~~~~f~~nrPF~f~I~d~~t~~iLF~G~v~~P 381 (381)
T d1by7a_ 321 FHQAMVDVNEEGTEAAAGTGGVMTGRTGHGGPQFVADHPFLFLIMHKITNCILFFGRFSSP 381 (381)
T ss_dssp EEEEEEEECSCBC-----------------CCEEECCSCEEEEEEETTTTEEEEEEEECCC
T ss_pred EEEEEEEECCCCCCCCCCCCEEEECCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCC
T ss_conf 8889999878842023133200003568999879933998999999999978999994398
|
| >d1odza_ c.1.8.3 (A:) Mannanase A, ManA {Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId: 155077]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Mannanase A, ManA species: Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId: 155077]
Probab=100.00 E-value=0 Score=28714.14 Aligned_cols=1 Identities=0% Similarity=0.038 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~p~~~~lvd~~At~~tk~L~~~L~~~~g~~il~Gqq~~~~~g~~~~~~~~~~sdv~~~tG~yPAv~G~D~~~~~~~~~~ 80 (381)
T d1odza_ 1 VKPVTVKLVDSQATMETRSLFAFMQEQRRHSIMFGHQHETTQGLTITRTDGTQSDTFNAVGDFAAVYGWDTLSIVAPKAE 80 (381)
T ss_dssp CCCEECCCSSTTCCHHHHHHHHHHHHHTTTCEEEEEETTTTCCSSCSCCSSSCCHHHHHHSSCCSEEEEEGGGTSTTCTT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHCCCCCCCCH
T ss_conf 98877620597779999999999998648966983355444564436665306667640377744201200135687321
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~GgIvt~~WH~~~P~~~~~~~~~~~~~~~d~~~~v~~~lpg~~~~~~~~~~ld~ia~~~~~L~~~~~~ 160 (381)
T d1odza_ 81 GDIVAQVKKAYARGGIITVSSHFDNPKTDTQKGVWPVGTSWDQTPAVVDSLPGGAYNPVLNGYLDQVAEWANNLKDEQGR 160 (381)
T ss_dssp CCCHHHHHHHHHTTCEEEEECCCCCTTTGGGCSSTTTTSTTCCSCCSTTTSTTSTTHHHHHHHHHHHHHHHHTCBCTTSC
T ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 44999999999779959998730788987777641577643135667504899703699999999999999975540388
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~vPVl~Rp~hE~nG~WfwWg~~~~~p~~y~~lwr~~~~~l~~~~g~~Nliwv~sp~~~~~~~~~~~~~~YPGDdyVDivG 240 (381)
T d1odza_ 161 LIPVIFRLYHENTGSWFWWGDKQSTPEQYKQLFRYSVEYLRDVKGVRNFLYAYSPNNFWDVTEANYLERYPGDEWVDVLG 240 (381)
T ss_dssp BCCEEEECSCSTTSSSSTTSTTSSCHHHHHHHHHHHHHHHHTTSCCCSEEEEECCBCCSSCCHHHHHSSCCCTTTCSEEC
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 76289964210479865667889998999999999999998715986189986478787776444201089988677888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~D~Y~~~~~~~~~~~~~~~~l~~~~~~A~~~gKp~altE~G~~~~~~~~~~~~~~W~~~~l~~i~~~p~~~~i~y~~~W~ 320 (381)
T d1odza_ 241 FDTYGPVADNADWFRNVVANAALVARMAEARGKIPVISGIGIRAPDIEAGLYDNQWYRKLISGLKADPDAREIAFLLVWR 320 (381)
T ss_dssp CEEEECSSSCHHHHHHHHHHHHHHHHHHHHHTCEECBCEEEECHHHHHTTCCCTTHHHHHHHHHHHSTTGGGCSEEEECC
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 63557888753589999999999999998559951663036667711026765426999999997282222443899985
Q ss_pred ------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 N~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~dF~~f~~~~~~lf~~dlp~ly~~p~~~~ 381 (381)
T d1odza_ 321 NAPQGVPGPNGTQVPHYWVPANRPENINNGTLEDFQAFYADEFTAFNRDIEQVYQRPTLIV 381 (381)
T ss_dssp CCTTCEEC--CCEECCCCSCCSSHHHHHTSHHHHHHHHHHSTTEECGGGCCSCSCCCEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHCHHHHHCCCCCC
T ss_conf 6766556666677763336777634457642899999976960113444807551677779
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=28712.29 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~e~p~~~tedfgFk~l~~~~~~~~~~d~lP~~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~ 80 (381)
T d1xipa_ 1 ASSLKDEVPTETSEDFGFKFLGQKQILPSFNEKLPFASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTF 80 (381)
T ss_dssp CCEECCCCCEEEESSCEEEEEEEEECSCCCTTCCCSSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCC
T ss_pred CCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCEEEEEEHHHHHHHHHCCCCCCCC
T ss_conf 97546667816646530587166212789544589644426899577788999889977999989978786556788862
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~ip~v~~vafs~d~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~ 160 (381)
T d1xipa_ 81 KWEKEIPDVIFVCFHGDQVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQL 160 (381)
T ss_dssp SEEEECTTEEEEEEETTEEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EECCCCCCEEEEEEECCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCEEEEEECCCCEEEEEECCCCCCCC
T ss_conf 34168998689986189899995897899985100145446554556111021886069996589778999415864444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~~~~~~~ed~ 240 (381)
T d1xipa_ 161 AQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDE 240 (381)
T ss_dssp EESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSS
T ss_pred CCCCCEEEECCCCEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCC
T ss_conf 47752387338926999968968999818982036567788201578867786166899951756999987776666767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~ii~~~~~~~~f~~~~Di~~pfgs~~R~p~y~~~~l~~w~~~~~~l~iv~Ss~s~di~vl~~~~~~~~~~D~~ 320 (381)
T d1xipa_ 241 VSYDQKMYIIKHIDGSASFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWDSKQVIEPSQDSE 320 (381)
T ss_dssp CCCCEEEEEEEEETTEEEEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEECSSSEEEESSGGG
T ss_pred CCCCEEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCEEEECCCC
T ss_conf 76433799982699983035256566776566667517999830056567868999556763456861367489812675
Q ss_pred ------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 Ra~lP~~~~~d~Dt~piGlalD~ss~~~v~~p~~g~~~~~plP~l~vL~~~G~L~~ww~~~ 381 (381)
T d1xipa_ 321 RAVLPISEETDKDTNPIGVAVDVVTSGTILEPCSGVDTIERLPLVYILNNEGSLQIVGLFH 381 (381)
T ss_dssp CCBCCBCTTTCCBCCEEEEEEECSCCC--------------CCEEEEEETTSEEEEEEEEC
T ss_pred CEEECCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEEEEC
T ss_conf 3040357788876531589997124752315788822278998899996987899999879
|
| >d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycoside hydrolase/deacetylase family: alpha-mannosidase domain: Golgi alpha-mannosidase II species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=0 Score=28718.34 Aligned_cols=1 Identities=0% Similarity=-0.460 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~q~~~~~~~~~~~~~~~kl~VhlV~HsH~D~gWl~t~~e~~~~~~~~i 80 (381)
T d3bvua3 1 CQDVVQDVPNVDVQMLELYDRMSFKDIDGGVWKQGWNIKYDPLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTKHI 80 (381)
T ss_dssp CCCSSSCCCCCSEEHHHHHHHCCCCCCCCSSSTTSCCCCCCGGGCBTTBCEEEEEEEEEECCSSSSSCHHHHHHHTHHHH
T ss_pred CCHHHHHCCCCCEEHHHHHHHCCCCCCCCCCCCCCCCEEECHHHCCCCCCCEEEEECCCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 94366405766622687886521538999716677512205421476788379993877888002375999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 l~~~l~~l~~~p~~~F~~~~~~~~~~w~~~~~pe~~~~vk~lV~~GrlEivgg~wv~~De~~~~~es~Irql~~G~~~l~ 160 (381)
T d3bvua3 81 LSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLK 160 (381)
T ss_dssp HHHHHHHHHHCTTCCEEECCHHHHHHHHTTSCHHHHHHHHHHHHTTSEEESSCCSSCBCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEECCEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999879997799835389999999749999999999998798799687121463457997999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~fG~~p~~~w~~D~FGhs~~lp~il~~~Gi~~~~~~R~~~~~~~~~~~~k~lef~w~~~W~~~~~s~ilth~~~~~~Y~ 240 (381)
T d3bvua3 161 QFMNVTPTASWAIAPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYD 240 (381)
T ss_dssp HHHCCCCCEEEECSSSSBCTHHHHHHHTTTCCEEEECCCCHHHHHHHHHTTCSEEEECCTTCSSCTTCEEEEECCSSCSS
T ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHHHHCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCCCCC
T ss_conf 97599973589638887657789999856988699974135542005201466504304666899880457516555668
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~p~~~~~d~~~~~~f~f~~~~~~~~~~p~~~~~~~i~~~nv~~r~~~~~~~~~~~a~~~~tn~vL~p~G~Df~y~~a~~w 320 (381)
T d3bvua3 241 IPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEW 320 (381)
T ss_dssp GGGTSSSCHHHHGGGCGGGSSTTSCCCTTSCCCCCCCTTTHHHHHHHHHHHHHHHHTTSSSSEEEEEEEEETCSCSHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHH
T ss_conf 85567887211345442123455777876668766625589999999999999986216887389816668787761037
Q ss_pred ------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~n~~kli~~iN~~~~~~v~i~~ST~~~Yf~al~~~~~~~~~~~P~~~gDFfpYad~~ 381 (381)
T d3bvua3 321 DVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRS 381 (381)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCEEEEECCHHHHHHHHHHHHHTTSCCCCEEESCBCSCBSST
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 7888769999999971888881899889999999999987524778877678876788899
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=0 Score=28711.55 Aligned_cols=1 Identities=0% Similarity=-0.726 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~fp~l~~~~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~ 80 (381)
T d1elua_ 1 QFPGLANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGC 80 (381)
T ss_dssp CCGGGTTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHH
T ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHH
T ss_conf 99878988895697636899999999999999865278765315679999999999999998397945199978858986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~ 160 (381)
T d1elua_ 81 DIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQ 160 (381)
T ss_dssp HHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCC
T ss_pred HHCCHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 21000233247853899546541132011122334542222322233333205899998640233222123333456531
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~ 240 (381)
T d1elua_ 161 VLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWR 240 (381)
T ss_dssp BCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 10035788987520345321022344334554442212222333333454422122305677741888986396100244
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 320 (381)
T d1elua_ 241 SITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQA 320 (381)
T ss_dssp TEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf 54433333443344432222333223204555433001588744421101456667899998875089769647887653
Q ss_pred ------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~vsf~~~~~~~~~~i~~~L~~~gi~v~~~~~~~~lRis~~~~nt~edid~ll~~l~e~~~ 381 (381)
T d1elua_ 321 GLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLADFGP 381 (381)
T ss_dssp SEEEEEECSSSCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 1899983898899999999996896898668999799955788999999999999996691
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=100.00 E-value=0 Score=28711.86 Aligned_cols=1 Identities=0% Similarity=-1.587 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~p~~p~~~~~~~~~~~~~~~~~~~~v~i~~rDG~~L~~~v~~P~~~~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~ 80 (381)
T d1mpxa2 1 TSPMTPDITGKPFVAADASNDYIKREVMIPMRDGVKLHTVIVLPKGAKNAPIVLTRTPYDASGRTERLASPHMKDLLSAG 80 (381)
T ss_dssp CCTTSCSSCSSCCCCCCTTCSEEEEEEEEECTTSCEEEEEEEEETTCCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 98989999998777776555866988999899998999999996899973089997567789765656665444320068
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~a~~Gy~vv~~d~RG~g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~ 160 (381)
T d1mpxa2 81 DDVFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMA 160 (381)
T ss_dssp GHHHHHTTCEEEEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEECCCCCCCCCCEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHH
T ss_conf 99999689799998137657889853315201210132006789999999998753588576504560365778889888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 a~~~~~~l~a~v~~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (381)
T d1mpxa2 161 LTNPHPALKVAVPESPMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLE 240 (381)
T ss_dssp HTSCCTTEEEEEEESCCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGG
T ss_pred HHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCC
T ss_conf 75356521043232454252010243468335322289998642110366112110135677787525654424023144
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~d~~w~~~s~~~~~~~~~i~vP~l~i~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~LviGPw~H~~~ 320 (381)
T d1mpxa2 241 QLPWWHKLTEHAAYDAFWQEQALDKVMARTPLKVPTMWLQGLWDQEDMWGAIHSYAAMEPRDKRNTLNYLVMGPWRHSQV 320 (381)
T ss_dssp GSHHHHHHHHTCSSCHHHHTTCHHHHHHTSCCCSCEEEEEETTCSSCSSHHHHHHHHHGGGCTTSSSEEEEEESCCTTGG
T ss_pred CCHHHHHHHHCCCCCCHHHHCCCHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
T ss_conf 46177887527875301232690266652345674389842555775653899999999842666783699936767787
Q ss_pred ------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------~ 467 (1064)
=
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wFD~~LKg~~~~~~~ppV~~~~~G~~~Wr~~~~W 381 (381)
T d1mpxa2 321 NYDGSALGALNFEGDTARQFRHDVLRPFFDQYLVDGAPKADTPPVFIYNTGENHWDRLKAW 381 (381)
T ss_dssp GSCCSEETTEECSSCHHHHHHHHTHHHHHHHHHSTTCCCCCCCSEEEEETTTTEEEEESSS
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCC
T ss_conf 6677767766665101134689999999999727999999999889997899968407979
|
| >d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]
Probab=100.00 E-value=0 Score=28712.62 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~p~~W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gGd~~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~~~~~~~~~~~ 80 (381)
T d2guya2 1 ATPADWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYH 80 (381)
T ss_dssp CCHHHHTTCCEEEECHHHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCCTT
T ss_pred CCCCCCCCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99702147829999755211799988877787667647848999999699998779998996988778766688899998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 gY~~~d~~~vd~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (381)
T d2guya2 81 GYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQ 160 (381)
T ss_dssp SCSEEEEEEECTTSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCEEBCGGGCCGGGSBSCCSGGGBCCSCBCCCTTCHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
T ss_conf 75046646655677877899999989886063213100124666545765222334689875431001344445444554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~w~~~~giDGfR~D~~~~~~~~f~~~~~~~~~~~~igE~~~~~~~~~~ 240 (381)
T d2guya2 161 VEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAAGVYCIGEVLDGDPAYTC 240 (381)
T ss_dssp HHHSBEECSSEEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCGGGHHHHHHHHTSEEEECCCCSCHHHHG
T ss_pred CCEEECCCCCCCCCHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHCCHHHHHHHHHCCEEEEEEECCCCCHHHHC
T ss_conf 32023257765510103355889999998765103113555103403754589999764321402563110364075540
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~enHD~~R~~s~~~~~~~~~~a~~~l~t 320 (381)
T d2guya2 241 PYQNVMDGVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKSDCPDSTLLGTFVENHDNPRFASYTNDIALAKNVAAFIIL 320 (381)
T ss_dssp GGGGTSSEEBCHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHSSCGGGSEECSCCTTSCCGGGTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 23324444224066799999996267761778999998874067643000101676752210225889999999999998
Q ss_pred ------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~pGiP~iy~G~E~g~~g~~~~~~r~~~~~~~~~~~~~l~~~i~~L~~lR~~~~~~~~~~~~ 381 (381)
T d2guya2 321 NDGIPIIYAGQEQHYAGGNDPANREATWLSGYPTDSELYKLIASANAIRNYAISKDTGFVT 381 (381)
T ss_dssp SSSEEEEETTGGGTCCCCSTTTTCCCGGGGTCCTTSHHHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred CCCCCEEECCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 0897298736002757998811001466556767879999999999997488641699879
|
| >d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus niger, acid amylase [TaxId: 5061]
Probab=100.00 E-value=0 Score=28710.96 Aligned_cols=1 Identities=100% Similarity=1.367 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gG~~~g~~~kLdyL~~LGv~~I~L~Pi~~~~~~~~~~~~~~~ 80 (381)
T d2aaaa2 1 LSAASWRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYH 80 (381)
T ss_dssp CCHHHHTTCCEEECCHHHHCCTTCCSCCCCCGGGCSCCCCCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTT
T ss_pred CCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 98034488727999838106899998877777767758938999999799999769998994987668765788998875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 gY~~~d~~~id~~~Gt~~~~k~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (381)
T d2aaaa2 81 GYWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLTM 160 (381)
T ss_dssp SCSEEEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCBSSCGGGCCGGGSBSCCSGGGBCCCCBCCCTTCHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 56646543311024988999999998866311110023445433456776555333587554345588766456445555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~pdln~~np~v~~~~~~~~~~~~~~~giDGfR~D~~~~~~~~f~~~~~~~~~~~~igE~~~~~~~~~~ 240 (381)
T d2aaaa2 161 VEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPGYNKASGVYCVGEIDNGNPASDC 240 (381)
T ss_dssp HHHSBEECSSSEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEESCSTTSCGGGHHHHHHHHTSEEEECCCCSCHHHHG
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 67775678666675313233255667766644204221322000001233307899998744532233530379813321
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~nHD~~R~~~~~~~~~~~~~a~a~llt 320 (381)
T d2aaaa2 241 PYQKVLDGVLNYPIYWQLLYAFESSSGSISNLYNMIKSVASDCSDPTLLGNFIENHDNPRFAKYTSDYSQAKNVLSYIFL 320 (381)
T ss_dssp GGGGTSSEEBCHHHHHHHHHHHSSTTSCHHHHHHHHHHHHHHCSCGGGSEECSCCTTSCCGGGTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 11344333002157899999985487307899999974331157721103435667721041246989999999999997
Q ss_pred ------------------------------------------------------------E
Q ss_conf ------------------------------------------------------------8
Q 001511 467 ------------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~pG~P~iy~G~E~g~~g~~~p~~r~~~~~~~~~~~~~l~~~i~~L~~lRk~~~al~~~~~~ 381 (381)
T d2aaaa2 321 SDGIPIVYAGEEQHYAGGKVPYNREATWLSGYDTSAELYTWIATTNAIRKLAIAADSAYIT 381 (381)
T ss_dssp SSSEEEEETTTTTTCCCCTTTTTCCCGGGGTTCTTCHHHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHCCCCCC
T ss_conf 0797675747214878998834111367677746769999999999997049453279879
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=28644.26 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~t~~~h~~~~~dp~ga~~~PI~~sstf~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LE~~~~a~~fsSGMaAisal 80 (380)
T d1ibja_ 1 ASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAV 80 (380)
T ss_dssp CCHHHHHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHH
T ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHH
T ss_conf 97767624279999999896188557766461887766895140898868999999999971986188603199999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 l~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~ 160 (380)
T d1ibja_ 81 THLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAH 160 (380)
T ss_dssp HTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred HHHHCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 98627998799974033554012222110454212235751678877775067618996142443223445899999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~g~~~vVDnT~atP~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rg 240 (380)
T d1ibja_ 161 AQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRG 240 (380)
T ss_dssp TTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHH
T ss_pred HCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC
T ss_conf 75980896243004300255455898999606520256667554433344126777787630466773787779999842
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 l~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~~~~a~~f~d~l~l~~~a~ 320 (380)
T d1ibja_ 241 IKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAV 320 (380)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 31445538889888899999997389866996056456864211222456542111111127999999998389175741
Q ss_pred -----------------------------------------------------------E
Q ss_conf -----------------------------------------------------------8
Q 001511 467 -----------------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------------~ 467 (1064)
.
T Consensus 321 SlG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlE~~eDLi~Dl~qAl~~l~~ 380 (380)
T d1ibja_ 321 SFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTFPL 380 (380)
T ss_dssp CCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSSCHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 568766130485223012089999997697939599983409999999999999976689
|
| >d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal domain {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Pyruvate phosphate dikinase, N-terminal domain domain: Pyruvate phosphate dikinase, N-terminal domain species: Maize (Zea mays) [TaxId: 4577]
Probab=100.00 E-value=0 Score=28642.40 Aligned_cols=1 Identities=0% Similarity=-0.892 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~f~~~~~~~~~~~~~lvGGK~AnLgel~~~G~pVP~GFvITt~Ay~~Fi~~n~~l~~~L~~~I~~~l~~~~~~~~ 80 (380)
T d1vbga3 1 KKRVFHFGKGKSEGNKTMKELLGGKGANLAEMASIGLSVPPGFTVSTEACQQYQDAGCALPAGLWAEIVDGLQWVEEYMG 80 (380)
T ss_dssp CCSEEEEETTEESSCTTCTTTTHHHHHHHHHHHHTTCCCCCEEEECHHHHHHHHHTTSCCCTTHHHHHHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 98899879986568814475072889989999978599999888549999999980764658799999999987787633
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~e~~a~~s~a~~~~~~~~~~~~~~~~~~~~~~~~ 160 (380)
T d1vbga3 81 ATLGDPQRPLLLSVRSGAAVSMPGMMDTVLNLGLNDEVAAGLAAKSGERFAYDSFRRFLDMFGNVVMDIPRSLFEEKLEH 160 (380)
T ss_dssp CBTTCSSSBCCEEEECCCSSCCTTCCCCEEEETCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHH
T ss_conf 22356421011001232034566767787751352488998863231101766555553101100034024567788888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~q~m~~~~~~gv~ft~~p~~~~~~~~~I~a~~Glg~~v 240 (380)
T d1vbga3 161 MKESKGLKNDTDLTASDLKELVGQYKEVYLSAKGEPFPSDPKKQLELAVLAVFNSWESPRAKKYRSINQITGLRGTAVNV 240 (380)
T ss_dssp HHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTCCCCCCCCEEE
T ss_pred HHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEECCCCCCCCCCCCCEEECCCCCCCEEE
T ss_conf 88762304543136987566788998876650487422226888887654212102477100156502641330124245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~La~l~~~iE~~yg~P 320 (380)
T d1vbga3 241 QCMVFGNMGNTSGTGVLFTRNPNTGEKKLYGEFLVNAQGEDVVAGIRTPEDLDAMKNLMPQAYDELVENCNILESHYKEM 320 (380)
T ss_dssp EECCCSCSSTTCEEEEEESSCTTTCCSSCEEEEEESSCHHHHHHTSCCCEETHHHHHHCHHHHHHHHHHHHHHHHHHCSC
T ss_pred EEEEECCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 56663388737667613443444675213322112555545300044366531022238899999999999999981985
Q ss_pred -----------------------------------------------------------E
Q ss_conf -----------------------------------------------------------8
Q 001511 467 -----------------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------------~ 467 (1064)
-
T Consensus 321 qDIEWA~~dg~L~ILQaRPv~~~~~aa~~~~~d~~~~~~i~~~~~~~~~~p~~~~~~l~~ 380 (380)
T d1vbga3 321 QDIEFTVQENRLWMLQCRTGKRTGKSAVKIAVDMVNEGLVEPRSAIKMVEPGHLDQLLHP 380 (380)
T ss_dssp EEEEEEEETTEEEEEEEEECCCCHHHHHHHHHHHHHTTSSCHHHHGGGSCHHHHHHTTSC
T ss_pred CEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHCCC
T ss_conf 105999989989999744787557879999999988599688999873898577461399
|
| >d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Hypothetical protein MW1667 (SA1546) domain: Hypothetical protein MW1667 (SA1546) species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=28640.04 Aligned_cols=1 Identities=0% Similarity=1.134 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~i~fd~dGVll~~~~~~D~s~ltv~~ll~s~e~Lg~~~~i~~~k~~~~t~~~i~~~~~~~~~il~~~k~~g~n~~~dl 80 (380)
T d1qyia_ 1 MKKILFDVDGVFLSEERCFDVSALTVYELLMDKCYLGLHSHIDWETLTDNDIQDIRNRIFQKDKILNKLKSLGLNSNWDM 80 (380)
T ss_dssp CCEEEECSBTTTBCSHHHHHHHHHHHHHHHHCTTTTCCSCCCCGGGCCHHHHHHHHHHHHTTTHHHHHHHHTTCCCHHHH
T ss_pred CCEEEEECCCEEECCEEECCHHHHHHHHHHHCHHHCCCCEEEECCCCCCHHHHHHEEEEECCHHHHHHHHHCCCCHHHHH
T ss_conf 96699937807982433203676658887612011256404533765510043311133053246676662688806999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~k~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (380)
T d1qyia_ 81 LFIVFSIHLIDILKKLSHDEIEAFMYQDEPVELKLQNISTNLADCFNLNEQLPLQFLDNVKVGKNNIYAALEEFATTELH 160 (380)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHCSSCHHHHHTTSGGGCSSCCCCCTTTTHHHHTTCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCHHHCC
T ss_conf 99999999998774348985778987775436408999875365556775148888765324553144755521376528
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~a~~~~r~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~p~~~v~~~l~~lk~aGi~v~i~Tg~ 240 (380)
T d1qyia_ 161 VSDATLFSLKGALWTLAQEVYQEWYLGSKLYEDVEKKIARTTFKTGYIYQEIILRPVDEVKVLLNDLKGAGFELGIATGR 240 (380)
T ss_dssp CSCCGGGSTTCHHHHHHHHHHHHHHHHHHHHHHHHCSCCSCSSCCCTTTTCCBSSCHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 75888999986899999999999877220223345533156675423013565334363999999999879959998899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~a~~il~~lgl~~~F~~~~i~~~~d~~~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~k~~iv~~~~~~~~~~~~ 320 (380)
T d1qyia_ 241 PYTETVVPFENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFI 320 (380)
T ss_dssp CHHHHHHHHHHHTCGGGSCGGGEECHHHHHHHHHHSTTSCCCCTTSTHHHHHHHHCCCGGGHHHHHHCCTTCSCTTTEEE
T ss_pred CHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 79999999998199534785058744133311220331102369986999999998088778899999973899886999
Q ss_pred -----------------------------------------------------------E
Q ss_conf -----------------------------------------------------------8
Q 001511 467 -----------------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------------~ 467 (1064)
+
T Consensus 321 vGD~~~D~~aak~Ag~~~Igv~~G~~g~~~~~el~~~~AD~ii~~~~el~~il~~l~~~~ 380 (380)
T d1qyia_ 321 VGDSLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVINHLGELRGVLDNLLEHH 380 (380)
T ss_dssp EESSHHHHHHHHHHTCEEEEESCBTTBGGGHHHHHHTTCSEEESSGGGHHHHHSCTTTTC
T ss_pred ECCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCEEECCHHHHHHHHHHHHHCC
T ss_conf 889989999999879988999458888643778976799999889999999999998509
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=100.00 E-value=0 Score=28639.86 Aligned_cols=1 Identities=0% Similarity=-0.892 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~LF~P~~ig~~~lkNRiv~~pm~~~~~~~G~p~~~~~~~y~~rA~Ggglii~~~~~V~~~~~~~~~~~~~~~d~~i~ 80 (380)
T d1q45a_ 1 SNETLFSSYKMGRFDLSHRVVLAPMTRCRALNGVPNAALAEYYAQRTTPGGFLISEGTMVSPGSAGFPHVPGIYSDEQVE 80 (380)
T ss_dssp CCCCTTSCEEETTEEESCSEEECCCCCCCSGGGCCCHHHHHHHHHTCCTTCEEEEEEEESSTTCCCSTTCCBCSSHHHHH
T ss_pred CCCCCCCCCCCCCEEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCEEECCCCCCCCCCCCCCCHHHHH
T ss_conf 98635898118999856875884438883889979999999999998497799974508877757899986217779988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~k~l~~~vh~~g~~~~~QL~H~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~ 160 (380)
T d1q45a_ 81 AWKQVVEAVHAKGGFIFCQLWHVGRASHAVYQPNGGSPISSTNKPISENRWRVLLPDGSHVKYPKPRALEASEIPRVVED 160 (380)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCTTSCCGGGSGGGCCCEESSSCCCCTTTCCEECTTSCEECCCCCEECCGGGHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCHHHHHHHHHH
T ss_conf 99999999873576258875307866665545567787666557666677224267755568998843787889999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 f~~aA~~A~~aGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~~~~d~~~ 240 (380)
T d1q45a_ 161 YCLSALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLD 240 (380)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGG
T ss_pred HHHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 99999999982865366000211367654165335576655764231036677779988887015672278752022366
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~Gg~~~~~ 320 (380)
T d1q45a_ 241 ATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRMAYNGTFMSSGGFNKEL 320 (380)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC---------------CHHHHHHHHHHHHSCSCEEEESSCCHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCHHH
T ss_conf 42133123333210256676653135632477416754433334566567625667889988652488589679989999
Q ss_pred -----------------------------------------------------------E
Q ss_conf -----------------------------------------------------------8
Q 001511 467 -----------------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ae~~l~~G~~DlV~~gR~liaDPdlv~K~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (380)
T d1q45a_ 321 GMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGELNKYNRKTFYTQDPVVGYTDYPFLAP 380 (380)
T ss_dssp HHHHHHTTSCSEEEESHHHHHCTTHHHHHHTTCCCCCCCGGGSSCCCSSTTTTCSCCCCC
T ss_pred HHHHHHCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999998699632455299887924999996299988887466458999898577789897
|
| >d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase CelA species: Clostridium cellulolyticum [TaxId: 1521]
Probab=100.00 E-value=0 Score=28637.97 Aligned_cols=1 Identities=0% Similarity=1.201 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~g~nlgn~lda~~~~~~~~~~~~e~~Wgnp~~t~~~i~~ik~~Gfn~vRi 80 (380)
T d1edga_ 1 MYDASLIPNLQIPQKNIPNNDGMNFVKGLRLGWNLGNTFDAFNGTNITNELDYETSWSGIKTTKQMIDAIKQKGFNTVRI 80 (380)
T ss_dssp CCCGGGSCCCCCCCCCCCCSHHHHHHHHHCSEEECTTSTTCCCCSSCCSGGGHHHHTTCSCCCHHHHHHHHHHTCCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 95434576564465566888789999864784623867036887656678987776699616699999999869987997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 Pv~w~~~~~~~~~~i~~~~l~~v~~vV~~a~~~Gl~VIldlHh~~~~~~~~~~~~~~~~~~~~~~~~~W~qiA~~fkd~~ 160 (380)
T d1edga_ 81 PVSWHPHVSGSDYKISDVWMNRVQEVVNYCIDNKMYVILNTHHDVDKVKGYFPSSQYMASSKKYITSVWAQIAARFANYD 160 (380)
T ss_dssp CCCCGGGEETTTTEECHHHHHHHHHHHHHHHTTTCEEEEECCSCBCTTTSBCSSGGGHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 34078826899885298999999999999997699799845667887766678656757799999999999887606898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~l~fel~NEP~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~IR~~~~~n~~r~i~v~g~~~~~~~~~~~~~~~p~ 240 (380)
T d1edga_ 161 EHLIFEGMNEPRLVGHANEWWPELTNSDVVDSINCINQLNQDFVNTVRATGGKNASRYLMCPGYVASPDGATNDYFRMPN 240 (380)
T ss_dssp TTEEEECCSSCCCTTSTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHHHTCGGGGTSCEEEECGGGCHHHHHSTTCCCCC
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHCCCC
T ss_conf 66999621344446786544532223108999999999999999999984457886089857886477543000111554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 d~~~~~~~li~s~H~Y~p~~f~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~giPviiGEfG~~~~~~~~~r~ 320 (380)
T d1edga_ 241 DISGNNNKIIVSVHAYCPWNFAGLAMADGGTNAWNINDSKDQSEVTWFMDNIYNKYTSRGIPVIIGECGAVDKNNLKTRV 320 (380)
T ss_dssp CCTTCCSCEEEEEECCCSHHHHTSCGGGTCCCCCCTTCHHHHHHHHHHHHHHHHHTGGGTCCEEEEEECCCCSSCHHHHH
T ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHH
T ss_conf 45677887799975157643566667767877655576113899999999999988754962999623376789858999
Q ss_pred -----------------------------------------------------------E
Q ss_conf -----------------------------------------------------------8
Q 001511 467 -----------------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~~~~~a~~~gi~~~~Wdn~~~~~~~~~fg~~dr~~~~w~~p~~~~~~~~~~~g~~~ 380 (380)
T d1edga_ 321 EYMSYYVAQAKARGILCILWDNNNFSGTGELFGFFDRRSCQFKFPEIIDGMVKYAFGLIN 380 (380)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCCCSSSSCCCCCEETTTTEESSHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 999999999998699279987998888866745153788865889999999998648999
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=28640.78 Aligned_cols=1 Identities=0% Similarity=-0.460 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~G 80 (380)
T d2gmha1 1 CKVPRITTHYTIYPRDQDKRWEGVNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSG 80 (380)
T ss_dssp CCSCCCCCCTTTSCTTSCGGGSSCCCCCCEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf 98885335642245335754444574201363888998977899999999985213413999799981788899874535
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 gvl~~~~l~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~ 160 (380)
T d2gmha1 81 ACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYP 160 (380)
T ss_dssp CEECTHHHHHHCTTHHHHTCCCCEECCEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEET
T ss_pred CCCCHHHHHHHCCCHHHHCCCCCCCEECCEEEEEECCCCCCCCCCCCHHCCCCCCEEEHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 16668899987630344355301320012279963366466545670110245551320467888999987631543443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~~~~G~~sip 240 (380)
T d2gmha1 161 GYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQGGFQSIP 240 (380)
T ss_dssp TCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCGGGGCC
T ss_pred ECCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 01001344225773110122332323334556555643003463799956178866288876542103665545666665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~l~~~G~lLVGDAAG~vnP~~g~GI~~Am~SG~lAAeai~~al~~~~~~~~~~~~~~~~y~~~~~~s~~~~eL~~~rn~~ 320 (380)
T d2gmha1 241 KLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIR 320 (380)
T ss_dssp CCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCCCCCCSSSSCCCTHHHHHHHTSHHHHHHHHTTTTT
T ss_pred CCCCCCEEEEECCCCCCCHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 34069806873354313512148753220237889999999997188643103444556889987628999999863877
Q ss_pred -----------------------------------------------------------E
Q ss_conf -----------------------------------------------------------8
Q 001511 467 -----------------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~g~~~g~~~~~~~~~~~~g~~p~tl~~~~~d~~~l~~~~~~~~i~y~~~d~~~~ 380 (380)
T d2gmha1 321 PSCHGILGVYGGMIYTGIFYWIFRGMEPWTLKHKGSDSDQLKPAKDCTPIEYPKPDGQIS 380 (380)
T ss_dssp GGGGSTTTHHHHHHHHHHHTTTTTTCCSCCCCCCSCGGGCCCCGGGSCCCCCCCCCSSSS
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 898752108999999999999857898701789997889988798589998999989169
|
| >d1elja_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: D-maltodextrin-binding protein, MBP species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=28636.70 Aligned_cols=1 Identities=0% Similarity=1.433 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~k~~eg~i~~W~~~~~~~~~~~~~~~~~F~~~~p~I~v~~~~~~~~~~~l~~~~~~g~~pDi~~~~~~~~~~~~~~g~l~ 80 (380)
T d1elja_ 1 MKIEEGKVVIWHAMQPNELEVFQSLAEEYMALCPEVEIVFEQKPNLEDALKAAIPTGQGPDLFIWAHDWIGKFAEAGLLE 80 (380)
T ss_dssp CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCTTEEEEEEECTTHHHHHHHHTTTTCSCSEEEEEGGGHHHHHHTTCBC
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCC
T ss_conf 98766389999589803899999999999987839799998689999999999976999819999937799999879963
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~dG~~y~~P~~~~~~~l~ynkd~~~~~P~T~~e~~~~~~~l~~~~~~~~~~~~~~~~ 160 (380)
T d1elja_ 81 PIDEYVTEDLLNEFAPMAQDAMQYKGHYYALPFAAETVAIIYNKEMVSEPPKTFDEMKAIMEKYYDPANEKYGIAWPINA 160 (380)
T ss_dssp CCTTTCCHHHHTTBCHHHHHHTEETTEECEEEEEEEECEEEEETTTCSSCCSSHHHHHHHHHHHCBGGGTBCSCBCCCSH
T ss_pred CCCHHHHHCCCCCCCHHHHHHEEECCEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 08665400221112166664103454301122222103566666676421332899999999986044771454311454
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~ 240 (380)
T d1elja_ 161 YFISAIAQAFGGYYFDDKTEQPGLDKPETIEGFKFFFTEIWPYMAPTGDYNTQQSIFLEGRAPMMVNGPWSINDVKKAGI 240 (380)
T ss_dssp HHHHHHHTTTSCCSEETTTTEECTTSHHHHHHHHHHHHHTGGGSCSCCCHHHHHHHHHTTSSSEEEECGGGHHHHHHTTC
T ss_pred CCCCHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHC
T ss_conf 32201120478500033454467798899999999987443233545750465666405761155244288999875430
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~s~~~e~A~~fi~~l~s~e~~~~~~~~~~g~~P~~~~~~~~~~~~~~~ 320 (380)
T d1elja_ 241 NFGVVPLPPIIKDGKEYWPRPYGGVKLIYFAAGIKNKDAAWKFAKWLTTSEESIKTLALELGYIPVLTKVLDDPEIKNDP 320 (380)
T ss_dssp CEEEECCCCEEETTEEECCCCEEEEEEEEEBTTCSCHHHHHHHHHHHHHCHHHHHHHHHHHCCBCCBGGGGGCHHHHTCH
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCHHHHCCH
T ss_conf 26644458878776666652211000011244674599999999986326999999998348888777788598755193
Q ss_pred -----------------------------------------------------------E
Q ss_conf -----------------------------------------------------------8
Q 001511 467 -----------------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~g~~~~d~~~al~~~~~~i~~~~k 380 (380)
T d1elja_ 321 VIYGFGQAVQHAYLMPKSPKMSAVWGGVDGAINEILQDPQNADIEGILKKYQQEILNNMQ 380 (380)
T ss_dssp HHHHHHHHHHTCEECCCCTTHHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 899999999518207889878999999999999997789992099999999999999529
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=100.00 E-value=0 Score=28562.93 Aligned_cols=1 Identities=0% Similarity=0.968 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (379)
T d2f5va1 1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLV 80 (379)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSSTTCCTTCSHHHHHCGGGHHHHHHHTCEESCCCCCCCC
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99732589989688999999999658893999936899987522346222023346664445434566333566554555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~r~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 160 (379)
T d2f5va1 81 VDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKA 160 (379)
T ss_dssp CCCSCTTSCCCSSCCCCTTCCTTCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGGSCCSSSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEECCCCCCHHHHHHCCCCCHHHHCCCCCCCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 66777777667876761688821214442454122303799846216683458988863012457776688686025564
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~ 240 (379)
T d2f5va1 161 ESYFQTGTDQFKESIRHNLVLNKLAEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVA 240 (379)
T ss_dssp HHHHTEESCTTTTCHHHHHHHHHHHHHTTTSSCCEECCEEEEEEETTEEEECCHHHHCCCCCEEETTEEEEEEEEECSEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHCCHHHHCCCCCEEECCCE
T ss_conf 44454899999877775277877553445656765444210047888788589886343310433776489999956999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~~~~g~h~mG~~~~ 320 (379)
T d2f5va1 241 CERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLPSLGSHRMGFDEK 320 (379)
T ss_dssp EEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSSTTTTBTCBCSCTT
T ss_pred EEEEEEECCCCEEEEEEEEECCCCEEEEEECEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 99999818999899999997999979999650899655766898997322002223345566753166545044566888
Q ss_pred ----------------------------------------------------------E
Q ss_conf ----------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~vvd~~~~v~g~~nlyv~d~sv~p~~~~~nPt~t~~alA~r~a~~i~~~~~~~~~~ 379 (379)
T d2f5va1 321 EDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFTPSPFT 379 (379)
T ss_dssp TTTCSBCTTCBBTTCSSEEECSGGGCCSCCCSCSHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 88724788975213289797388556775656818889999999999999862458999
|
| >d1lj5a_ e.1.1.1 (A:) Plasminogen activator inhibitor-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Plasminogen activator inhibitor-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28561.46 Aligned_cols=1 Identities=0% Similarity=0.403 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~~~~~F~~~l~~~l~~~~~~~N~v~SP~si~~~La~l~~Ga~g~T~~el~~~L~~~~~~~~~~~~~~~~~~ 80 (379)
T d1lj5a_ 1 VHHPPSYVAHLASDFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGMAPALRHLYK 80 (379)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHSTTBCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHTSCTTSTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 98976888888849999999998723969869987899999999999867728999999970999873778999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~l~~~~~~~~l~~an~l~v~~~~~~~~~f~~~~~~~y~~~~~~vdF~~~~~a~~~IN~wv~~~T~g~I~~~~~~~~l~~~ 160 (379)
T d1lj5a_ 81 ELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMISNLLGKGAVDQL 160 (379)
T ss_dssp HHHCGGGSSEEEEEEEEEEETTSCCCTTHHHHHHHHHSCCCEEECTTSHHHHHHHHHHHHHHTTTTSCCCSSCTTSSCTT
T ss_pred HHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 86175554520024478773567245788998787636600135555268999999999996049932331376678965
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 t~~~lvna~~f~~~W~~~F~~~~t~~~~F~~~~~~~~~V~~M~~~~~~~~~~~~~~~~~~~~vv~Lp~~~~~~sm~iilP 240 (379)
T d1lj5a_ 161 TRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAP 240 (379)
T ss_dssp CCEEEEEEEEEEEEBSSCCCCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEBTTSSEEEEEEEE
T ss_pred CEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEECC
T ss_conf 40466721799511347677355533210346785576112354151205885036666058999603798478999647
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~v~l~lPkf~i~~~~dl~~~L~~lGl~~~F~~~~adfs~is~~~~l~vs~v 320 (379)
T d1lj5a_ 241 YEKEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVAQA 320 (379)
T ss_dssp SSTTSCTHHHHTTCCHHHHHHHHHHCEEEEEEEEEECEEEEEEEECHHHHHHTTCCGGGCTTTCCCTTTCSSSCCCEEEE
T ss_pred CCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEEEEEEEEECHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 76666367776530077788777634313308999999984100277878867972235765565223678898077656
Q ss_pred ----------------------------------------------------------E
Q ss_conf ----------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------~ 467 (1064)
=
T Consensus 321 ~hk~~iev~E~G~~a~a~t~~~~~~~~~~~~f~~drPF~f~I~~~~t~~~lf~G~v~~P 379 (379)
T d1lj5a_ 321 LQKVKIEVNESGTVASSSTAVIVSARMAPEEIIMDRPFLFVVRHNPTGTVLFMGQVMEP 379 (379)
T ss_dssp EEEEEEEECSSEEEEEEEEEEEESSCCCCCCCCBCCEEEEEEEETTTTEEEEEEEEECC
T ss_pred EEEEEEEECCCCEEECCCCEEEECCCCCCCEEEEECCEEEEEEECCCCCEEEEEEECCC
T ss_conf 88999998787145022322542268999879940998999999999968999995398
|
| >d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium, strain lt2 [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Salmonella sialidase species: Salmonella typhimurium, strain lt2 [TaxId: 90371]
Probab=100.00 E-value=0 Score=28560.02 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~yRiP~L~~~~~G~llA~~e~R~~~~~d~~~~div~~rS~DgGkTWs~~ 80 (379)
T d3sila_ 1 EKSVVFKAEGEHFTDQKGNTIVGSGSGGTTKYFRIPAMCTTSKGTIVVFADARHNTASDQSFIDTAAARSTDGGKTWNKK 80 (379)
T ss_dssp CEEEEECTTCCCCBCTTSCBCCCSBGGGBCCEEEEEEEEECTTCCEEEEEEEESSCSCSSSCEEEEEEEESSSSSCCEEE
T ss_pred CCCEEEEECCCCCCCCCCCEEEECCCCCCEEEEECCEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 94089984775715889858996479986255746689997999599999667789887777519999913796589999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~i~~~~~~~~~~~~~~p~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~g~tw~~p~~~~~~ 160 (379)
T d3sila_ 81 IAIYNDRVNSKLSRVMDPTCIVANIQGRETILVMVGKWNNNDKTWGAYRDKAPDTDWDLVLYKSTDDGVTFSKVETNIHD 160 (379)
T ss_dssp EEECCCCSCTTTCEEEEEEEEEEEETTEEEEEEEEEEESSCCSCGGGCCSSSSCTTCEEEEEEESSTTSCCEEECCSHHH
T ss_pred EECCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 88647998765243477647887899978999999735788875430135678774247887658610001467425321
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~g~g~gi~~~~g~l~~p~~~~~~~~~~~~~~~~~~~sddgg~w~~~~~~~~~~~~E~~vve~dG~ll~ 240 (379)
T d3sila_ 161 IVTKNGTISAMLGGVGSGLQLNDGKLVFPVQMVRTKNITTVLNTSFIYSTDGITWSLPSGYCEGFGSENNIIEFNASLVN 240 (379)
T ss_dssp HHHHHCSEEEEEECSEECEECTTSCEEEEEEEEECTTSSCSEEEEEEEESSSSSEECCSCCEECTTCCEEEEEETTEEEE
T ss_pred CCCCCCCEEEECCCCCCEEEECCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCEEEECCCCEEE
T ss_conf 12236530455057662476046534645898815899862799999857887533540356778877889864885799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~R~~g~~~v~~S~DgG~TWse~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~r~~~~~~~s~d~g~tW~~~ 320 (379)
T d3sila_ 241 NIRNSGLRRSFETKDFGKTWTEFPPMDKKVDNRNHGVQGSTITIPSGNKLVAAHSSAQNKNNDYTRSDISLYAHNLYSGE 320 (379)
T ss_dssp EECCSSBCBCEEESSSSSCCEECTTTTTCSBCCTTCCCCEEEEEEETTEEEEEEEEECCTTSSTTCCCEEEEEECTTTCC
T ss_pred EEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCC
T ss_conf 98717966999986898623145665323221224321226883469919999889888888635899974688867788
Q ss_pred ----------------------------------------------------------E
Q ss_conf ----------------------------------------------------------8
Q 001511 467 ----------------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~~~~~~~~~~~~~aYS~l~~~~~~~~~~l~~lyE~~~~i~~~~lt~~l~~~~~~~ 379 (379)
T d3sila_ 321 VKLIDDFYPKVGNASGAGYSCLSYRKNVDKETLYVVYEANGSIEFQDLSRHLPVIKSYN 379 (379)
T ss_dssp EEEEEEEECSCCCTTSCCCEEEEEEEETTEEEEEEEEEETTEEEEEECGGGHHHHHTCC
T ss_pred CEEEECCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCEEEHHHHHHHHHHCCCC
T ss_conf 67995147501589970312248747989999999998999878369776477733479
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=100.00 E-value=0 Score=28486.78 Aligned_cols=1 Identities=0% Similarity=-2.554 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~LtfdDVllvP~~st~~sr~V~l~t~lt~~~~l~iPIIsApMdtVt~~~mA~als~~GGLGvLhr~~~ 80 (378)
T d1jr1a1 1 GLTAQQLFNCGDGLTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVTEAGMAIAMALTGGIGFIHHNCT 80 (378)
T ss_dssp CBCHHHHTSSCCCCCGGGEEECCCCCCSCGGGCBCCEESSSSCEESSCEEECCCTTTCSHHHHHHHHHHTCEEEECCSSC
T ss_pred CCCHHHHHCCCCCCCCCCEEEECCCCCCCHHHCEEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEECCCCC
T ss_conf 98978862568888844679847988776777562069887856899879799987388999999997899469769999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~~~~~~~~~~l~~agv~vi~id~a~g~~~~~~~~i~~ik~~~~~ 160 (378)
T d1jr1a1 81 PEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHEDDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPN 160 (378)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEECSSTHHHHHHHHHHHHTCCEEEECCSSCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHEEHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999887641104327643335546789999956687789999999751555576403676202357999999987899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~iIaGnVaT~e~a~~L~~aGAD~VkVGiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakA 240 (378)
T d1jr1a1 161 LQVIGGNVVTAAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKA 240 (378)
T ss_dssp CEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHH
T ss_pred CCEEECCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEE
T ss_conf 72530220129999999982999786033135444454222347665202567887511569853425333547732468
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 la~GAd~VMmGs~fAgt~EspG~~~~~~g~~~k~~~gm~S~~a~~~~~~~~~~~~~~~~~~~~~eG~~~~v~~~G~v~~~ 320 (378)
T d1jr1a1 241 LALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKF 320 (378)
T ss_dssp HHTTCSEEEESTTTTTBTTSSSCCEESSSCEEEEEECTTSTTTC----------------CCCCCBCEEEEECCBCHHHH
T ss_pred EEEECCEEEECCEEEEEECCCCCCCEECCCEEEECCCCCHHHHHHCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCHHHH
T ss_conf 88605435532321342004675231468332312431045554401320332103345644787317850368778999
Q ss_pred ---------------------------------------------------------E
Q ss_conf ---------------------------------------------------------8
Q 001511 467 ---------------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~l~gglrs~m~y~G~~~l~e~~~~~~~~~~~f~~~t~~~~~e~~~h~~~~~~~~~~ 378 (378)
T d1jr1a1 321 VPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSSAQVEGGVHSLHSYEKRLF 378 (378)
T ss_dssp HHHHHHHHHHHHHHTTCSBHHHHHHHHHHSCSCEEECCHHHHHHHSCCSCSCCCCCCC
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCCCCCC
T ss_conf 9999999888652657573999975333577269998845301257875541012339
|
| >d1xqga_ e.1.1.1 (A:) Maspin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Maspin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28483.44 Aligned_cols=1 Identities=0% Similarity=-0.726 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~l~~a~~~Fa~~L~~~l~~~~~~~N~v~SP~si~~~L~~l~~Ga~g~T~~el~~~L~~~~~~~~~~~~~~~~~~~ 80 (378)
T d1xqga_ 1 QGSMDALQLANSAFAVDLFKQLSEKEPLGNVLFSPIALSTSLSLAQVGAKGDTANEIGQVLHFENVKDVPFGFQTVTSDV 80 (378)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHSTTSCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHTTGGGCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 97678999999999999999987229798499888999999999998677589999999708998689999999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~l~~~~~l~~~~~~~~~~~f~~~~~~~y~~~v~~~dF~~~~~~~~~~IN~wv~~~T~g~i~~~~~~~~~~~~t 160 (378)
T d1xqga_ 81 NKLSSFYSLKLIKRLYVDKSLNLSTEFISSTKRPYAKELETVDFKDKLEETKGQINNSIKDLTDGHFENILADNSVNDQT 160 (378)
T ss_dssp HHHTTTSSEEEEEEEEEETTSCCCHHHHHHTTTTTTTCEEEECHHHHHHHHHHHHHHHHHHHTTTSCSCCSCTTSCCTTC
T ss_pred HCCCCCCEEEEEECHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 45467725887312022034532488998766323654686432440567789999999984158715456898989875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~l~na~~f~~~W~~~F~~~~T~~~~F~~~~~~~~~v~mm~~~~~~~~~~~~~l~~~vv~Lp~~~~~~sm~iilP~~~~ 240 (378)
T d1xqga_ 161 KILVVNAAYFVGKWMKKFSESETKESPFRVNKTDTKPVQMMNMEATFSMGNIDSINSKIIELPFQNKHLSMFILLPKDVE 240 (378)
T ss_dssp CEEEEEEEEEECCBSSCCCGGGCEEEEEESSSSCEEEEEEEEEEEEEEEEEEGGGTEEEEEEEBGGGSSEEEEEEESSCC
T ss_pred EEEEEEEEEEEEEECCCCCCCCCEECCEECCCCCEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCC
T ss_conf 17888875886002278755652215501289955764123101426422206777389995058995789999567665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~L~~l~~~l~~~~l~~~~~~~~~~~~~v~l~lPkF~i~~~~dl~~~L~~lGl~~~F~~~~adfs~is~~~~l~vs~ 320 (378)
T d1xqga_ 241 DESTGLEKIEKQLNSESLSQWTNPSTMANAKVKLSIPKFKVEKMIDPKASLENLGLKHIFSEDTSDFSGMSETKGVALSN 320 (378)
T ss_dssp SSSSSCHHHHHSCSHHHHHHHTCGGGCEEEEEEEEEECEEEEEEECTHHHHHHHTCCGGGCTTTCCCTTTCSCSSCCEEE
T ss_pred CCCCHHHHHHHHCCHHHHHHHHHHHHCEEEEEEEEEEEEEEEEEECHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 54433899998639889998743542534799998004899876255887775584000588877544577999923787
Q ss_pred ---------------------------------------------------------E
Q ss_conf ---------------------------------------------------------8
Q 001511 467 ---------------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------------~ 467 (1064)
=
T Consensus 321 i~qk~~i~vdE~G~~a~~~t~~~~~~~~~~f~~drPFlf~I~d~~t~~~Lf~G~v~~P 378 (378)
T d1xqga_ 321 VIHKVSLEITEDGGDSIEVPGARILQHKDELNADHPFIYIIRHNKTRNIIFFGKFSSP 378 (378)
T ss_dssp EEEEEEEEECSCBCCCCCCTTTTTSSCCCCCBCCSCEEEEEEETTTTEEEEEEEECCC
T ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEECCC
T ss_conf 6889999990685521223244457999879814998999999999978999993499
|
| >d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Probab=100.00 E-value=0 Score=28482.29 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~i~~~f~W~~~~i~~~~~~yl~~lG~tai~l~P~~e~~~~~~~~~~~~Y~~~dY~id~~~Gt~~df~~L 80 (378)
T d1jaea2 1 EKDANFASGRNSIVHLFEWKWNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYIINTRSGDESAFTDM 80 (378)
T ss_dssp CCCCCCCTTCEEEEEETTCCHHHHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCCSCSEETTEEHHHHHHH
T ss_pred CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHH
T ss_conf 99998879970699702574999999999999980998899092620678899877565678632268889999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 V~~aH~~GI~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dln~~n 160 (378)
T d1jaea2 81 TRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDFHSPCEVNNYQDADNVRNCELVGLRDLNQGS 160 (378)
T ss_dssp HHHHHHTTCEEEEEECCSBCCSSCEEBTTSCEEBTTTTBBTTTTBCGGGBCCCCBCCCTTCHHHHHHSBBTTBCBBCTTS
T ss_pred HHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99998567244564034421244677766555688744476788876556899886777875433100014567103389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 p~V~~~l~~~~~~w~e~gvDGfR~Daa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~ 240 (378)
T d1jaea2 161 DYVRGVLIDYMNHMIDLGVAGFRVDAAKHMSPGDLSVIFSGLKNLNTDYGFADGARPFIYQEVIDLGGEAISKNEYTGFG 240 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHTCCCCCGGGTCCTTCCCEEEEECCCCSSSSCCGGGTTTSS
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHCCCCCCCCCHHCCCCC
T ss_conf 99999999999999985778446531112578787777776543132112444555404532001553200110103665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~Fl~NHD~~R~~~~~~~~~~~~~~~~lA~af~lt~p~G~P 320 (378)
T d1jaea2 241 CVLEFQFGVSLGNAFQGGNQLKNLANWGPEWGLLEGLDAVVFVDNHDNQRTGGSQILTYKNPKPYKMAIAFMLAHPYGTT 320 (378)
T ss_dssp EEECHHHHHHHHHHHTTTSCGGGGGGCSGGGTCCCGGGEEECSCCTTHHHHSCTTCCCTTSHHHHHHHHHHHHHSCSSEE
T ss_pred HHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 00021332014554305762999999855440378540457624678777588763456898999999999998579887
Q ss_pred ---------------------------------------------------------E
Q ss_conf ---------------------------------------------------------8
Q 001511 467 ---------------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~iy~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~w~~~~r~~~i~~m~~frn~~~ 378 (378)
T d1jaea2 321 RIMSSFDFTDNDQGPPQDGSGNLISPGINDDNTCSNGYVCEHRWRQVYGMVGFRNAVE 378 (378)
T ss_dssp EEEECBCCSSTTCCCCBCTTSCBCCCEECTTSCEETTBCCGGGSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8982365577777898888987778875866787878889989999999999866479
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=100.00 E-value=0 Score=28411.48 Aligned_cols=1 Identities=0% Similarity=1.832 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~~~~~~~~~~~~p~~~l~~PGP~~v~~~Vl~am~~~~~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~ 80 (377)
T d1vjoa_ 1 ISINDNQRLQLEPLEVPSRLLLGPGPSNAHPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTA 80 (377)
T ss_dssp CCCCCTTCCCCCSCCCCCCEECSSSCCCCCHHHHHHHSSCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHH
T ss_conf 96473003446799987266610899789999999757688897888999999999999999859999809998484899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~ 160 (377)
T d1vjoa_ 81 AMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQ 160 (377)
T ss_dssp HHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEEC
T ss_pred HHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEECCCEEEE
T ss_conf 99999984334344420242001344444454320311100135778743202456666057640345554202334630
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (377)
T d1vjoa_ 161 PLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDM 240 (377)
T ss_dssp CCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCH
T ss_pred CHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEECC
T ss_conf 50554334552264389960002333321012456505640212440589779974132667765203589974011001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs~~v~~~~~p~ 320 (377)
T d1vjoa_ 241 NLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPD 320 (377)
T ss_dssp HHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCT
T ss_pred CHHHHCCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCCCEEEEEECCC
T ss_conf 10110257653346530142022257777666533725787888887654566664168546068276097499998999
Q ss_pred --------------------------------------------------------E
Q ss_conf --------------------------------------------------------8
Q 001511 467 --------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 321 GVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp TCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 989999999998649999966862326998998267578999999999999999859
|
| >d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=28410.96 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~k~Ki~~v~GtR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (377)
T d1o6ca_ 1 KKLKVMTVFGTRPEAIKMAPLVLELKKYPEIDSYVTVTAQHRQMLDQVLDAFHIKPDFDLNIMKERQTLAEITSNALVRL 80 (377)
T ss_dssp CCEEEEEEECSHHHHHHHHHHHHHGGGCTTEEEEEEECCSCGGGTHHHHHHTTCCCSEECCCCCTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 98469999970585999999999997189998799993798899999985168777535443889988999999999850
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~kpD~v~v~GDr~e~la~a~aa~~~~Ipi~HiegG~~s~~~~~~~~de~~R~~iskls~~hf~~t~~~~~~L~~ 160 (377)
T d1o6ca_ 81 DELFKDIKPDIVLVHGDTTTTFAGSLAAFYHQIAVGHVEAGLRTGNKYSPFPEELNRQMTGAIADLHFAPTGQAKDNLLK 160 (377)
T ss_dssp HHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTCEEEEESCCCCCSCTTTTTTHHHHHHHHHHHCSEEEESSHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 56665336653676403454301566653114227999514565433234714554003565304886323466634433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~G~~~~~I~~vG~~~~D~i~~~~~~~~~~~~~~~~~~~~~ilvt~Hr~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 240 (377)
T d1o6ca_ 161 ENKKADSIFVTGNTAIDALNTTVRDGYSHPVLDQVGEDKMILLTAHRRENLGEPMENMFKAIRRIVGEFEDVQVVYPVHL 240 (377)
T ss_dssp TTCCGGGEEECCCHHHHHHHHHCCSSCCCSTTTTTTTSEEEEECC----------HHHHHHHHHHHHHCTTEEEEEC---
T ss_pred HCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 03445427523420678888777777753334430578449998323101466337899998752123355653234552
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~ni~~~~~l~~~~fl~llk~s~~vIgnSss~i~Ea~~lg~P~Inir~~tERqe~~~~g~nilv~~ 320 (377)
T d1o6ca_ 241 NPVVREAAHKHFGDSDRVHLIEPLEVIDFHNFAAKSHFILTDSGGVQEEAPSLGKPVLVLRDTTERPEGVEAGTLKLAGT 320 (377)
T ss_dssp -CHHHHHHHHC--CCSSEEECCCCCHHHHHHHHHHCSEEEEC--CHHHHGGGGTCCEEEECSCCC---CTTTTSSEEECS
T ss_pred CCCCCHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHEEECCCCHHHHHHHHHHCEEEEECCCCCCCCHHHCCEEEECCC
T ss_conf 11321122101345651475132136889999864225641640467766665414898078875822000680598789
Q ss_pred --------------------------------------------------------E
Q ss_conf --------------------------------------------------------8
Q 001511 467 --------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~I~~~i~~~l~~~~~~~~~~~~~npYGdG~as~rI~~~L~~~~~~~k~~~~~~~ 377 (377)
T d1o6ca_ 321 DEENIYQLAKQLLTDPDEYKKMSQASNPYGDGEASRRIVEELLFHYGYRKEQPDSFT 377 (377)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHCCCTTCCSCHHHHHHHHHHHHTTSCSCCCCCCC
T ss_pred CHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 999999999999749687763065889898982999999999985083336878999
|
| >d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Citrate synthase superfamily: Citrate synthase family: Citrate synthase domain: Citrate synthase species: Antarctic bacterium DS2-3R [TaxId: 56673]
Probab=100.00 E-value=0 Score=28410.88 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~GL~Gv~v~~s~IS~Idg~~G~L~YRG~~i~dLa~~~sfEEVa~LL~~G~lP~~~el~~f~~~l~~~~~lp~~~~ 80 (377)
T d1a59a_ 1 EPTIHKGLAGVTADVTAISKVNSDTNSLLYRGYPVQELAAKCSFEQVAYLLWNSELPNDSELKAFVNFERSHRKLDENVK 80 (377)
T ss_dssp CCCCCGGGTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHTSCSCCHHHH
T ss_pred CCCCCCCCCCCEECEEECEEEECCCCEEEECCEEHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99889888998466075727858998799958439998714999999999978989499999999999998337986799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~l~~~p~~~~pm~~l~~~~s~l~~~~~~~~~~~~~~~~~~~~~lia~~~~i~a~~~r~~~g~~~~~p~~~~~~~~~~~~ 160 (377)
T d1a59a_ 81 GAIDLLSTACHPMDVARTAVSVLGANHARAQDSSPEANLEKAMSLLATFPSVVAYDQRRRRGEELIEPREDLDYSANFLW 160 (377)
T ss_dssp HHHTTSCTTSCHHHHHHHHHHHHHHTCTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99997302002113445555320344532344657777777777888899888877763268887789876256999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~l~~~Lvl~aDHg~n~StfaaR~vaSt~~d~~~~~~a~~~al~Gp~hGga~~~~~~~l~~i~~~~~~ 240 (377)
T d1a59a_ 161 MTFGEEAAPEVVEAFNVSMILYAEHSFNASTFTARVITSTLADLHSAVTGAIGALKGPLHGGANEAVMHTFEEIGIRKDE 240 (377)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHHSCCCSSC
T ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 62123320888877677876542477676236666664258514467787877603420111278999999998621566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~v~~~l~~~~~i~GfGH~vy~~~DPR~~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~k~l~pNvD~ 320 (377)
T d1a59a_ 241 SLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSRVPTMKSALDAMIKHYDRPEMLGLYNGLEAAMEEAKQIKPNLDY 320 (377)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTBCCSSCSSCCTTHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHCCCBCTHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 50266777899999998667866466874445667406777767777665412206677899999999971799978176
Q ss_pred --------------------------------------------------------E
Q ss_conf --------------------------------------------------------8
Q 001511 467 --------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~l~~~lG~p~~~~~~lf~i~R~~G~~AH~~Eq~~~~~l~RP~~~Y~G~~~R~~p 377 (377)
T d1a59a_ 321 PAGPTYNLMGFDTEMFTPLFIAARITGWTAHIMEQVADNALIRPLSEYNGPEQRQVP 377 (377)
T ss_dssp HHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCSCCCCCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCC
T ss_conf 999999996849667769999999999999999998579975746540389999897
|
| >d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Glycosyl Hydrolase Family 88 domain: Unsaturated glucuronyl hydrolase species: Bacillus sp. GL1 [TaxId: 84635]
Probab=100.00 E-value=0 Score=28408.89 Aligned_cols=1 Identities=0% Similarity=1.832 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~g~~~~~~~~~Wt~Gf~~G~lwl~ye~Tgd~~~~~~a~~~~~~~~~~~~~ 80 (377)
T d2d5ja1 1 MWQQAIGDALGITARNLKKFGDRFPHVSDGSNKYVLNDNTDWTDGFWSGILWLCYEYTGDEQYREGAVRTVASFRERLDR 80 (377)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCEEEEESSSSSEEEESSCSSCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 94899999999999988855101797748998377408983376479999999999869999999999999999975224
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~hd~Gf~~~~s~~~~y~~Tgd~~y~~~a~~~a~~L~~r~~~~~g~~~~w~~~~~~~~~~~~~iD~lm~~~~l~~~ 160 (377)
T d2d5ja1 81 FENLDHHDIGFLYSLSAKAQWIVEKDESARKLALDAADVLMRRWRADAGIIQAWGPKGDPENGGRIIIDCLLNLPLLLWA 160 (377)
T ss_dssp TTTCSSSTHHHHHHTTHHHHHHHHCCHHHHHHHHHHHHHHHTTEETTTTEECCSSSTTCTTTTTEEEGGGGGGHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 45566347631257679999987299989999999999999831867785435787888777766055125429999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~tgd~~y~~~A~~h~~~~~~~l~r~d~s~~~~~~~~~~tG~~~~~~t~qG~~~~s~WsRGqaW~i~gl~~~~~~t~~~ 240 (377)
T d2d5ja1 161 GEQTGDPEYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNA 240 (377)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHTBBTTSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHCCH
T ss_conf 88509876999999999999998268899748898865899862578888788773167632199999999999983881
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~l~~a~~~a~~~l~~~~~dgi~~wd~~~p~~~~~~~DsSa~Ai~A~gll~L~~~~~~~~~~~~~Y~~~a~~i~~~l~~~ 320 (377)
T d2d5ja1 241 DLLETAKRMARHFLARVPEDGVVYWDFEVPQEPSSYRDSSASAITACGLLEIASQLDESDPERQRFIDAAKTTVTALRDG 320 (377)
T ss_dssp HHHHHHHHHHHHHHTTCCTTSCCBSBTTSCCCTTSCBCHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999999999999738877885321566678999877326789999999999852577267999999999999999876
Q ss_pred --------------------------------------------------------E
Q ss_conf --------------------------------------------------------8
Q 001511 467 --------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~iygDYy~~Eal~r~~~~~~~~w~~~~~ 377 (377)
T d2d5ja1 321 YAERDDGEAEGFIRRGSYHVRGGISPDDYTIWGDYYYLEALLRLERGVTGYWYERGR 377 (377)
T ss_dssp TBCCCCSSCCCSBSCBCSBTTTTBSSSBCBHHHHHHHHHHHHHHHHCCCTTSSCTTC
T ss_pred HHCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 600689988844631635789999988673559999999999997388653745899
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=100.00 E-value=0 Score=28407.51 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~y~~e~h~v~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~~~~~~~~~~ 80 (377)
T d1k8qa_ 1 AFGKLHPTNPEVTMNISQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLPN 80 (377)
T ss_dssp CCCBSSCCCGGGGCCHHHHHHHTTCCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGGGSSSCTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCC
T ss_conf 97667789987677889999984998558999817999898998468888876689989089989996314677442752
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~sla~~L~~~Gy~V~~~D~rG~G~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~g~~~v~lvGhS~GG~ia~ 160 (377)
T d1k8qa_ 81 NSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKTGQDKLHYVGHSQGTTIGF 160 (377)
T ss_dssp TCHHHHHHHTTCEEEECCCTTSTTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHHCCSCEEEEEETHHHHHHH
T ss_pred CHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
T ss_conf 06999999879989998089988888887778752220137799984341799999999972999879997332699999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~a~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (377)
T d1k8qa_ 161 IAFSTNPKLAKRIKTFYALAPVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNAL 240 (377)
T ss_dssp HHHHHCHHHHTTEEEEEEESCCSCCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99986323320004675214544444114678998750136666642000114046777765431022034667877655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~vPvL~i~ 320 (377)
T d1k8qa_ 241 FIICGFDTMNLNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWN 320 (377)
T ss_dssp HHHHCCCGGGSCGGGHHHHHTTCCCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEE
T ss_pred HHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEE
T ss_conf 42037771114677766666315553359999999999753741220330345556651345751222754899989999
Q ss_pred --------------------------------------------------------E
Q ss_conf --------------------------------------------------------8
Q 001511 467 --------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------~ 467 (1064)
.
T Consensus 321 G~~D~~~~~~~~~~l~~~lp~~~~~~~i~~~GH~d~~~~~~a~~~v~~~I~~fl~~~ 377 (377)
T d1k8qa_ 321 GGNDLLADPHDVDLLLSKLPNLIYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGTD 377 (377)
T ss_dssp ETTCSSSCHHHHHHHHTTCTTEEEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHTC
T ss_pred ECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 589972289999999997799759999699988303424454999999999997229
|
| >d2i71a1 e.72.1.1 (A:1-377) Hypothetical protein SSO1389 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: SSO1389-like superfamily: SSO1389-like family: Cas DxTHG domain: Hypothetical protein SSO1389 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=28405.35 Aligned_cols=1 Identities=0% Similarity=0.237 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 m~~l~ia~wG~p~~w~~~~Y~~~~~~~~~~~s~~~l~~~~~~d~~vi~~~dSl~~~~~~~~~d~~~~~~~~~~~~~~~l~ 80 (377)
T d2i71a1 1 MASIVFSTIGNPKGYQKVTYEIDGEKFESNVSVLALRDLLKVDKTVVILGISVADVYNCKYADYRSCKECIIQNSKNDLG 80 (377)
T ss_dssp CEEEEEEEESCTTCCCCEEEEETTEEEEESSHHHHHHHHTTCSEEEEEEEGGGGGGGTCCCSCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCCEEEEEEECCCEEECCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 95499993478665728999978931204455999998747883999997301123468822799999999999998608
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~viv~P~vg~~f~g~~~~~~~~~~~~l~~~l~~~~~~eI~lD~thGiNy~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 160 (377)
T d2i71a1 81 ISESYVVAPNVYQKFKGKPDHYFTYIYYHSLRILEKEGINEVFIDTTHGINYMGVLAKEAIQLAVSAYAAKSEKEVKVSL 160 (377)
T ss_dssp CCSCEEEECCCBTTEESCTHHHHHHHHHHHHHHHHHHTEEEEEEEEEECCTTHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 88449992797628856888999999999999850389868999777870059999999999999999974578744999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~nsdP~~~~~~~~~~I~~i~~~~i~p~~~~~~i~~~fl~~~k~~~~~~~ke~~~~i~~~~~al~~gl~lyL~~~~~~~~l 240 (377)
T d2i71a1 161 YNSDPVGKDVSDTVKLHEIEAIKISPLSGLKYVTYQILNKDKNFFNKIFSDSVNAIPRFATALDNGLFIYLSEKDSSLHL 240 (377)
T ss_dssp EECCCTTCCTTSEEECEEEEEEEECHHHHHHHHHHHHHTSCTTTTTTSSTTHHHHHHHHHHHHHTTCHHHHHHSCCHHHH
T ss_pred EECCCCCCCCCCCEEEEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHH
T ss_conf 94776568887746999840126221466554303566667777678888888899999986540429999874022327
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~~~~l~~l~e~~~~~v~~~~i~~Ei~~i~~~~~~ 320 (377)
T d2i71a1 241 KRLEDDLSKDPLLTPSENEINVVYKDMKYALSHALFYVISRFSGNVDLDTLRHYAETYADKVTRAIIENEVDKIEKYQMG 320 (377)
T ss_dssp HHHHHHHHSCCEEEECSSCEEEECCCHHHHHHHHHHHHHGGGCSCEEHHHHHHHHHHHSCHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 88998630002330465312302330788999999998740230210899999998861356999999999988861477
Q ss_pred --------------------------------------------------------E
Q ss_conf --------------------------------------------------------8
Q 001511 467 --------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~~~k~~~~~~~~~d~RNF~AHaGLe~nvt~vk~~~~~i~v~y~e~~~~i~~~l 377 (377)
T d2i71a1 321 SERKLLGEYMKVEGKGFDKRILYAHGGLPYAGTYVYKEKDKVYVTYGDKIDEIERQI 377 (377)
T ss_dssp SSCEEGGGTC---------CHHHHTTTCCTTTCEEEEETTEEEEECGGGHHHHHHHC
T ss_pred CCHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEHHHHHHHHHHCC
T ss_conf 760478886310147885300100348652729999669889998787599998419
|
| >d1ci9a_ e.3.1.1 (A:) Esterase EstB {Burkholderia gladioli [TaxId: 28095]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: Esterase EstB species: Burkholderia gladioli [TaxId: 28095]
Probab=100.00 E-value=0 Score=28405.21 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~a~l~~~id~~~~~~~~~~~~pG~~~~V~~~g~~v~~~~~G~ad~~~~~~~~~~t~f~iaSvtK~~ta~~v~~Lve~G~l 80 (377)
T d1ci9a_ 1 AASLAARLDAVFDQALRERRLVGAVAIVARHGEILYRRAQGLADREAGRPMREDTLFRLASVTKPIVALAVLRLVARGEL 80 (377)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCSEEEEEEEETTEEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCC
T ss_conf 94189999999999998289875999999999999998478624455988999986860326899999999999975996
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~ldd~v~~ylP~~~~~~~~~~~~~ITi~~Ll~htsGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (377)
T d1ci9a_ 81 ALDAPVTRWLPEFRPRLADGSEPLVTIHHLLTHTSGLGYWLLEGAGSVYDRLGISDGIDLRDFDLDENLRRLASAPLSFA 160 (377)
T ss_dssp CTTSBGGGTCTTCCCBCTTSCCCCCBHHHHHHTCSSCCCHHHHCTTSHHHHHTCCCSSSCCSSCHHHHHHHHHHSBCSSC
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCCEEHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 53322112331110134324577515013035532466633444113565540245665455899999999862888679
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 PG~~~~Ys~~~~lLg~iie~vtg~~~~~~~~e~i~~PLGm~~t~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (377)
T d1ci9a_ 161 PGSGWQYSLALDVLGAVVERATGQPLAAAVDALVAQPLGMRDCGFVSAEPERFAVPYHDGQPEPVRMRDGIEVPLPEGHG 240 (377)
T ss_dssp TTSCCCCCTHHHHHHHHHHHHHTSCHHHHHHHHTHHHHTCCSCBSCCSCGGGBCCCEECCSSSCEECCTTEEEECCTTSC
T ss_pred CCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99627607689999998763133203455467786213875343357826640000024677653134654345545666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~gGl~sta~Dlarf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~G~~~~~~~~~ 320 (377)
T d1ci9a_ 241 AAVRFAPSRVFEPGAYPSGGAGMYGSADDVLRALEAIRANPGFLPETLADAARRDQAGVGAETRGPGWGFGYLSAVLDDP 320 (377)
T ss_dssp SEEEECGGGGGCTTSCCCTTTCCEECHHHHHHHHHHHHHCSSSSCHHHHHHHHSCSSCGGGCTTSTTEEECSSSEEESCH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECEEEECCC
T ss_conf 54345763223645555677632235999999999765116787077876650102477766678971241011430376
Q ss_pred --------------------------------------------------------E
Q ss_conf --------------------------------------------------------8
Q 001511 467 --------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~~~~~g~~~h~G~~gt~~~idP~~~l~vv~ltN~~~~~~~~~~~~~l~~~vYa 377 (377)
T d1ci9a_ 321 AAAGTPQHAGTLQWGGVYGHSWFVDRALGLSVLLLTNTAYEGMSGPLTIALRDAVYA 377 (377)
T ss_dssp HHHTCSSCTTCEEEEETTTEEEEEEGGGTEEEEEEESEETHHHHSHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCEECCCCCCEEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 535788999856626821418999944998999988489999875999999982189
|
| >d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II, PAC) {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Supersandwich superfamily: V-region of surface antigen I/II (SA I/II, PAC) family: V-region of surface antigen I/II (SA I/II, PAC) domain: V-region of surface antigen I/II (SA I/II, PAC) species: Streptococcus mutans [TaxId: 1309]
Probab=100.00 E-value=0 Score=28404.87 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~kdla~Y~~~l~~Y~~e~~~y~~alae~ek~KnedGyl~~p~aQ~LvF~~Ep~A~~ti~~~gk~~~a~~~~~~~~~~~~~ 80 (377)
T d1jmma_ 1 QKDLADYPVKLKAYEDEQASIKAALAELEKHKNEDGNLTEPSAQNLVYDLEPNANLSLTTDGKFLKASAVDDAFSKSTSK 80 (377)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTSBSSCCCBCEECSCCTTCEEEEEESSEEECHHHHHHHHHSGGGH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCCHHHHHHHHCCCCCH
T ss_conf 94077889999999999999999999998740556663640145414316787268885255311301112233044303
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~v~l~kg~~vtvTYtNL~nSsynGKKI 160 (377)
T d1jmma_ 81 AKYVQKILQLDDLDITNLEQSNDVASSMELYGNFGDKAGWSTTVSNNSQVKWGSVLLERGQSATATYTNLQNSYYNGKKI 160 (377)
T ss_dssp HHHHTTEECGGGCCGGGGCSGGGEESSCCEEETTSTTSSCEETTTBTSCCEEEEEEECTTCEEEEEEECCSSCEETTEEE
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCEE
T ss_conf 33101010223443224333322000002355555445501024567753025699617998999962754442178323
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 sKvvytYtl~~s~s~~g~~i~~~l~~DPT~t~f~~~~~g~~~~~~~~~v~~~vkFYDe~G~~i~~~~Al~S~sSLN~~~~ 240 (377)
T d1jmma_ 161 SKIVYKYTVDPKSKFQGQKVWLGIFTDPTLGVFASAYTGQVEKNTSIFIKNEFTFYDEDGKPINFDNALLSVASLNREHN 240 (377)
T ss_dssp EEEEEEEEECTTCCCSSSCEEEEEESSGGGCEEEECCCSSCBSSCEEEEEEEEEEEETTSCBCCEEEEEEEECCCCBCSS
T ss_pred EEEEEEEEECCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCEECCCCCEEEEECCCCCCC
T ss_conf 69999999555788888624689815995279998512666656643899999999789989226602687410258998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~iE~V~~~ng~fv~I~GSSV~~~~g~~ya~~~~~~~~~~~Gsr~~~~~~~~~~s~WD~~~s~~ayYGA~v~~~~g~~~~~ 320 (377)
T d1jmma_ 241 SIEMAKDYSGKFVKISGSSIGEKNGMIYATDTLNFKQGEGGSRWTMYKNSQAGSGWDSSDAPNSWYGAGAIKMSGPNNHV 320 (377)
T ss_dssp EEEEEESCSSEEECBTTCSEEEETTEEEECSSCCSSTTSTTCSSCSSCCSSTTCCCCSSSCTTGGGGCEEEEEEESCEEE
T ss_pred CEEEEECCCCEEEEECCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEE
T ss_conf 46899748971899579766865994772677432346676421223467766787778997631123778970895489
Q ss_pred --------------------------------------------------------E
Q ss_conf --------------------------------------------------------8
Q 001511 467 --------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------~ 467 (1064)
.
T Consensus 321 t~g~~~a~~~~~~~~~~~~~~~d~~~~~~~~iWfa~ns~i~a~~vp~~~~e~Pt~P~ 377 (377)
T d1jmma_ 321 TVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPV 377 (377)
T ss_dssp EEEEEEGGGTSCGGGSCCCTTCCTTCCBCSEEEECCBSCCCSSSCCBCCCCCCCCCC
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 970455432246644455666655567776231674378765458999987899989
|
| >d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: Choline/Carnitine O-acyltransferase domain: Carnitine acetyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28410.08 Aligned_cols=1 Identities=0% Similarity=-0.460 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~Q~sLP~LPvP~L~~Tl~ryL~s~kPl~s~ee~~~t~~~v~~F~~~~g~G~~Lq~~L~~~~~~~~nwl~~~W~~~~YL~ 80 (377)
T d1nm8a1 1 HHTDPLPRLPVPPLQQSLDHYLKALQPIVSEEEWAHTKQLVDEFQASGGVGERLQKGLERRARKTENWLSEWWLKTAYLQ 80 (377)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHSSSTTHHHHHHHHTTT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf 96567998999999999999999865149999999999999998736860799999999975147773468899886435
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~R~pl~~~~n~~~~~~~~~~~~~~~q~~rAA~l~~~~l~f~~~l~~~~l~~~~~~~~plcM~qy~~lF~t~RiP~~~~D~ 160 (377)
T d1nm8a1 81 YRQPVVIYSSPGVMLPKQDFVDLQGQLRFAAKLIEGVLDFKVMIDNETLPVEYLGGKPLCMNQYYQILSSCRVPGPKQDT 160 (377)
T ss_dssp CCSCSBTTTBCEEECCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCEETTEECCCGGGGGTTTEEEECCSSSCE
T ss_pred CCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCEEECHHHHHHHCCCEECCCCCCCC
T ss_conf 88785466766300267777760679999999999999999998728778656589944189998761765068999883
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 l~~~~~~~~~~~HIvV~~~g~~ykv~v~d~~g~~ls~~ei~~~l~~I~~~~~~~~~~~vg~LTt~~Rd~Wa~~r~~L~~~ 240 (377)
T d1nm8a1 161 VSNFSKTKKPPTHITVVHNYQFFELDVYHSDGTPLTADQIFVQLEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLIKD 240 (377)
T ss_dssp EEECTTSSSCCCEEEEEETTEEEEEECBCTTSCBCCHHHHHHHHHHHHHTCCCCCSCCGGGGGGSCHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCCEEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 20057778888769999899899999988999899899999999999961104688886405678728999999998608
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~N~~~L~~Iesalfvv~LDd~~p~~~~e~~~~~~~~~~lhG~g~~~~~~NRW~DKs~q~IV~~nG~~g~~~EHS~~DG~ 320 (377)
T d1nm8a1 241 KVNRDSVRSIQKSIFTVCLDATMPRVSEDVYRSHVAGQMLHGGGSRLNSGNRWFDKTLQFIVAEDGSCGLVYEHAAAEGP 320 (377)
T ss_dssp HHHHHHHHHHHHSSCEEEEECCCSCCCSTTHHHHHHHHHHHCSCTTTTTTSCCTTBSEEEEEETTSCEEEEECTTSCCHH
T ss_pred CHHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCHH
T ss_conf 60799999997547888833788888613666666555033687557987726665517999789877862267761289
Q ss_pred --------------------------------------------------------E
Q ss_conf --------------------------------------------------------8
Q 001511 467 --------------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~v~~~~~~v~~~~~~~~~~~~~~~~~~~p~~L~f~l~~~i~~~I~~a~~~~~~li~D 377 (377)
T d1nm8a1 321 PIVTLLDYVIEYTKKPELVRSPMVPLPMPKKLRFNITPEIKSDIEKAKQNLSIMIQD 377 (377)
T ss_dssp HHHHHHHHHHHHHHSCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999987234666788778899975878976989999999999999998259
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=100.00 E-value=0 Score=28333.15 Aligned_cols=1 Identities=0% Similarity=-0.494 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~i~~F~le~G~~l~~~~laY~t~G~ln~~~~NaVlv~h~ltg~~~~~~WW~~liG~g~alDt~kyfV 80 (376)
T d2vata1 1 NRFEASLDAQDIARISLFTLESGVILRDVPVAYKSWGRMNVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFI 80 (376)
T ss_dssp CHHHHTSCCCEEEEEEEEECTTSCEEEEEEEEEEEESCCCTTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEE
T ss_pred CCHHHCCCCCCEEEECCEEECCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCEEE
T ss_conf 93220345475375376782799885895699996256488899889984887677021234887077998637463389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 I~~n~lG~~~gst~p~s~~p~~~~~~~yg~~FP~~ti~D~v~aq~~ll~~LGI~~l~aViG~SmGGmqal~wa~~~Pd~v 160 (376)
T d2vata1 81 ICLNYLGSPFGSAGPCSPDPDAEGQRPYGAKFPRTTIRDDVRIHRQVLDRLGVRQIAAVVGASMGGMHTLEWAFFGPEYV 160 (376)
T ss_dssp EEECCTTCSSSSSSTTSBCTTTC--CBCGGGCCCCCHHHHHHHHHHHHHHHTCCCEEEEEEETHHHHHHHHHGGGCTTTB
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCHHHH
T ss_conf 98346788767888877896212377545568852057889999999987386617886134278899999998361777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~li~Ia~~~~~s~~~~a~~~~~~~ai~~Dp~w~~G~Y~~~~~p~~GL~~Ar~~~~~ty~S~~~~~~rf~~~~~~~~gr~ 240 (376)
T d2vata1 161 RKIVPIATSCRQSGWCAAWFETQRQCIYDDPKYLDGEYDVDDQPVRGLETARKIANLTYKSKPAMDERFHMAPGVQAGRN 240 (376)
T ss_dssp CCEEEESCCSBCCHHHHHHHHHHHHHHHHSTTSGGGTCCTTSCCHHHHHHHHHHHHHHTSCHHHHHHHSCCCCCCC----
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
T ss_conf 52312356523455778888999987422212457775433116789999999999984599999999723224422200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vesyL~~~g~k~~~rfDansyl~l~~a~d~~Di~~~~~g~l~~aL~~I~a~~L 320 (376)
T d2vata1 241 ISSQDAKKEINGTDSGNSHRAGQPIEAVSSYLRYQAQKFAASFDANCYIAMTLKFDTHDISRGRAGSIPEALAMITQPAL 320 (376)
T ss_dssp -----------------------CGGGHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTCBTTTTTCSSHHHHHTTCCSCEE
T ss_pred CCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEE
T ss_conf 01000111013444332222343156799999987765530555012899999998503333338899999850899989
Q ss_pred -------------------------------------------------------E
Q ss_conf -------------------------------------------------------8
Q 001511 467 -------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------~ 467 (1064)
+
T Consensus 321 vI~~~sD~lFPp~~~~e~a~~l~~a~~~~I~S~~GHDaFL~e~~~~~~~I~~FL~q 376 (376)
T d2vata1 321 IICARSDGLYSFDEHVEMGRSIPNSRLCVVDTNEGHDFFVMEADKVNDAVRGFLDQ 376 (376)
T ss_dssp EEECTTCSSSCHHHHHHHHHHSTTEEEEECCCSCGGGHHHHTHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 99868420849999999998627874999899988652266999999999999748
|
| >d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28331.49 Aligned_cols=1 Identities=0% Similarity=0.237 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 MKi~~v~GtR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (376)
T d1f6da_ 1 MKVLTVFGTRPEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILEGLKP 80 (376)
T ss_dssp CEEEEEECSHHHHHHHHHHHHHHHHCTTCEEEEEECCTTGGGGHHHHHHTTCCCSEECCCCSSSSCHHHHHHHHHHHHHH
T ss_pred CEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 96999998267399999999999738998779999088989999999862878774400488999899999999986478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~kPD~v~v~GDr~e~la~a~aa~~~~ipi~HiegG~~s~~~~~~~pde~~R~~iskls~~hf~~~~~~~~~L~~~G 160 (376)
T d1f6da_ 81 ILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLREN 160 (376)
T ss_dssp HHHHHCCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCCCCSCTTSSTTHHHHHHHHHHTCSEEEESSHHHHHHHHHTT
T ss_pred HHHHCCCCCEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHCC
T ss_conf 89745676224310344313689998740753899852446542000474066554203200488743478886877518
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~I~~vG~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvt~H~~~~~~~~~~~i~~~l~~~~~~~~~~~ 240 (376)
T d1f6da_ 161 VADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQ 240 (376)
T ss_dssp CCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEECCCCBSSCCHHHHHHHHHHHHHHHHCTTEE
T ss_pred CCCCCCCEECCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 98653412167248788887765423512321111022334777766998335411112009999999865434214047
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ii~p~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~~fl~ll~~a~~vignSssgi~Ea~~lg~P~Inir~~ter~~~~~~g 320 (376)
T d1f6da_ 241 IVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVTAG 320 (376)
T ss_dssp EEEECCBCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHCSEEEESSSGGGGTGGGGTCCEEECSSCCSCHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCEEEEECCCCHHHHHHHHCCCEEECCCCCCCCCCEECC
T ss_conf 85254432124446766640444513323556789999984163998368506766787489889727876576412368
Q ss_pred -------------------------------------------------------E
Q ss_conf -------------------------------------------------------8
Q 001511 467 -------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~i~v~~~~~~I~~ai~~~l~~~~~~~~~~~~~npYGdG~as~rI~~iLk~~~i~~ 376 (376)
T d1f6da_ 321 TVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQACSRILEALKNNRISL 376 (376)
T ss_dssp SEEECCSSHHHHHHHHHHHHHCHHHHHHHHHSCCTTCCSCHHHHHHHHHHHTCCCC
T ss_pred EEEECCCCHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 06987899999999999997285766530457898989849999999998568999
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=28331.42 Aligned_cols=1 Identities=0% Similarity=-1.689 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~ip~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~ 80 (376)
T d1mdoa_ 1 DFLPFSRPAMGAEELAAVKTVLDSGWITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMT 80 (376)
T ss_dssp CCBCSCCCCCCHHHHHHHHHHHHHTCCSSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 98668999999999999999996699768977999999999998819599968889999999998089998989872343
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~ai~~~g~~pv~~d~~~~~~~~d~~~l~~~i~~~tkaIi~~h~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~ 160 (376)
T d1mdoa_ 81 WVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTS 160 (376)
T ss_dssp CHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCE
T ss_pred CCCCCCCHHCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCHHCCCE
T ss_conf 42110001103431244114433347899999975478981999867888715333899988741946996464310674
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~g~~g~~~~Sf~~~K~l~~g~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~ 240 (376)
T d1mdoa_ 161 YKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLN 240 (376)
T ss_dssp ETTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHH
T ss_pred ECCEECCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHH
T ss_conf 68820466657664278867787788888997125679998764036876443332233323311000012353440145
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~gI~~~~ 320 (376)
T d1mdoa_ 241 AAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGL 320 (376)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 66655433333579999866534554311465433221234444544332222220002133399999999987998465
Q ss_pred -------------------------------------------------------E
Q ss_conf -------------------------------------------------------8
Q 001511 467 -------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~~ 376 (376)
T d1mdoa_ 321 HFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAG 376 (376)
T ss_dssp CCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred ECCCHHCCHHHHHHCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 78532308998952887898799999859798448999999999999999999729
|
| >d1k9oi_ e.1.1.1 (I:) Alaserpin (serpin 1) {Tobacco hornworm (Manduca sexta) [TaxId: 7130]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Alaserpin (serpin 1) species: Tobacco hornworm (Manduca sexta) [TaxId: 7130]
Probab=100.00 E-value=0 Score=28330.26 Aligned_cols=1 Identities=0% Similarity=-1.656 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 g~~~~~~~l~~~~~~F~~~l~~~~~~~~~~~N~v~SP~si~~~La~l~~ga~g~T~~el~~~L~~~~~~~~~~~~~~l~~ 80 (376)
T d1k9oi_ 1 GETDLQKILRESNDQFTAQMFSEVVKANPGQNVVLSAFSVLPPLGQLALASVGESHDELLRALALPNDNVTKDVFADLNR 80 (376)
T ss_dssp CTHHHHTTHHHHHHHHHHHHHHHHHTTSTTSCEEECSGGGHHHHHHHTTTBCTHHHHHHHHHTTCSCTTHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 98558999999999999999999983298981998889999999999986673899999997099985457999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~f~~~~~~~y~~~~~~vdf~~~~~a~~~IN~wv~~~T~g~I~~~~~~~~l~~~~ 160 (376)
T d1k9oi_ 81 GVRAVKGVDLKMASKIYVAKGLELNDDFAAVSRDVFGSEVQNVDFVKSVEAAGAINKWVEDQTNNRIKNLVDPDALDETT 160 (376)
T ss_dssp SCSCCSSBCCEEEEEEEEESSCCBCSGGGSTTTSSSCCCEEEECTTSHHHHHHHHHHHHHHHTTTSSCCCSCGGGCCTTC
T ss_pred HHHHCCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCH
T ss_conf 87536798578854002304887166899998752286554245555699999999999986378221006877899501
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~lvna~~f~~~W~~~F~~~~t~~~~F~~~~~~~~~v~~m~~~~~~~~~~~~~l~~~vveLP~~~~~~sm~iilP~~~~ 240 (376)
T d1k9oi_ 161 RSVLVNAIYFKGSWKDKFVKERTMDRDFHVSKDKTIKVPTMIGKKDVRYADVPELDAKMIEMSYEGDQASMIIILPNQVD 240 (376)
T ss_dssp CEEEEEEEEEEBCBSSCCCGGGCEEEEECSSSSCCEEEEEEEEEEEEEEEEETTTTEEEEEEEBGGGSEEEEEEEESSTT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCC
T ss_conf 45665515655422278883233513053279926999723421417887507798799996237993699999668776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~l~~~~~~l~~~~~~~~~~~~~~~~~v~v~lPkF~i~~~~~l~~~L~~lGl~~~F~~~~ad~s~~~~~~~~l~vs~v~q~ 320 (376)
T d1k9oi_ 241 GITALEQKLKDPKALSRAEERLYNTEVEITLPKFKIETTTDLKEVLSNMNIKKLFTPGAARLENLLKTKESLTVDAAIQK 320 (376)
T ss_dssp THHHHHHHTTSTTTTTTTTTSCEEEEEEEEEECEEEEEEEEHHHHHHTTTCCSTTSTTTSCBTTTBSSCCCCCCSEEEEE
T ss_pred CHHHHHHHHCCHHHHHHHHHHCCCEEEEEEEEEEEEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 63578864225346899875151228999843589752212788765438754357652312356588998788736877
Q ss_pred -------------------------------------------------------E
Q ss_conf -------------------------------------------------------8
Q 001511 467 -------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------~ 467 (1064)
=
T Consensus 321 ~~ievdE~G~~a~a~t~~~~~~~~~~~~~~f~~drPF~f~I~~~~~~lf~G~v~~P 376 (376)
T d1k9oi_ 321 AFIEVNEEGAEAAAANAFGIVPKSLILYPEVHIDRPFYFELKIDGIPMFNGKVIEP 376 (376)
T ss_dssp EEEEECSCBSSCSSSCCSSSEESCCCCCCEEECCSCEEEEEEESSSEEEEEEESCC
T ss_pred EEEEECCCCEEEECCCCEEEECCCCCCCCEEEEECCEEEEEEECCEEEEEEEECCC
T ss_conf 89999987116001432344116788897599648979999979969999994288
|
| >d2v3qa1 c.94.1.1 (A:1-376) PstS-like phosphate-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: PstS-like phosphate-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28329.09 Aligned_cols=1 Identities=0% Similarity=-0.826 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~i~gaGat~p~p~~~~~~~~~~~~~~y~~~GSG~G~~~~~~g~~~~~~~~~~~tvdfa~sd~~l~~~E~~~~~~~~~~~~ 80 (376)
T d2v3qa1 1 DINGGGATLPQKLYLTPDVLTAGFAPYIGVGSGKGKIAFLENKYNQFGTDTTKNVHWAGSDSKLTATELATYAADKEPGW 80 (376)
T ss_dssp CBCEEECSTTHHHHTSTTTSCTTBCCCEECCHHHHHHHHHHTCGGGTCSCTTSCCCEEEESSCCCHHHHHHHHHHTHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 93215222799999998763596789956576899999963886444556546771353477789999988774066777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~v~iPv~~~~Iai~~N~~~~~~l~Lt~~~L~~If~G~It~Wnd~~i~~p~~~I~vv~R~d~SGTt~~Ft~~L~~~~~~ 160 (376)
T d2v3qa1 81 GKLIQVPSVATSVAIPFRKAGANAVDLSVKELCGVFSGRIADWSGITGAGRSGPIQVVYRAESSGTTELFTRFLNAKCTT 160 (376)
T ss_dssp CCEEEEEEEEEECBCBBCCCCSSCCEECHHHHHHHHHTSCCBGGGSTTSCCCSBCEEEEESSCCHHHHHHHHHHHHHCCS
T ss_pred CCEEEEEEEEEEEEEEEECCCCHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 86289747764479987347625543479999843337623001135457677854784489986078889988652755
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~g~~~~~~~~~~~~~~~~~~~~~a~gs~gv~~~v~~~~~~~gaIGY~~~~ya~~~~~~l~~~~~~~~~~~~~~~~~ 240 (376)
T d2v3qa1 161 EPGTFAVTTTFANSYSLGLTPLAGAVAATGSDGVMAALNDTTVAEGRITYISPDFAAPTLAGLDDATKVARVGKGVVNGV 240 (376)
T ss_dssp SSSCBCCCSCGGGTBTTCSTTSTTCEEESHHHHHHHHHHCTTSCSCEECCBCHHHHSSSGGGGGCTTTBCEECCEEETTE
T ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCEEECC
T ss_conf 32234643102332245677677650003573087887540477765444430100022222103332024453000035
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~v~pt~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YPI~~~~y~~~~~~~~~~~~~~~vk~Fl 320 (376)
T d2v3qa1 241 AVEGKSPAAANVSAAISVVPLPAAADRGNPDVWVPVFGATTGGGVVAYPDSGYPILGFTNLIFSQCYANATQTGQVRDFF 320 (376)
T ss_dssp EECCBCCCTHHHHHHHHTCCCCCGGGTTCGGGGSCEEESSCBTTEEECCSSSCSCEEEEEEEEESCBSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHEEEECCCCCCHHHHHHHHHH
T ss_conf 66621245888997651144554344566532223334322001357888851112111100002368700159999999
Q ss_pred -------------------------------------------------------E
Q ss_conf -------------------------------------------------------8
Q 001511 467 -------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~l~~~~~gq~~~~~~GyvPLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (376)
T d2v3qa1 321 TKHYGTSANNDAAIEANAFVPLPSNWKAAVRASFLTASNALSIGNTNVCNGKGRPQ 376 (376)
T ss_dssp HHHTCSSSSSHHHHHHTTCBCCCHHHHHHHHHHHTSTTSTTSTTCHHHHTTCCBCC
T ss_pred HHHHHCCCCHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 99860553257889978974399999999999986225420227864367788999
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=28328.61 Aligned_cols=1 Identities=0% Similarity=0.237 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~iyld~a~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~ 80 (376)
T d1eg5a_ 1 MRVYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKT 80 (376)
T ss_dssp CCEECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHC
T ss_conf 97988786316699999999999998748987654699999999999999999998098978099979878997766621
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~ 160 (376)
T d1eg5a_ 81 VAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVED 160 (376)
T ss_dssp HHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEECHHHHHHHCCCCCEEEEEECCCCCCCEEEEEHH
T ss_conf 44332235763223432220128999999866988999768988727789999864899608999777665412554124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~gp~G~~~l~~~~~~~~~p~~~g~~~~~~~~~~~~~ 240 (376)
T d1eg5a_ 161 VTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGVPIRPLIHGGGQERGLRSGTQN 240 (376)
T ss_dssp HHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTSCCCCSBCSSCTTTTTBCSCCC
T ss_pred HHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCEECCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 44554311467504787531246545520004865000125434357886268852576658720189875445477664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~vr~ 320 (376)
T d1eg5a_ 241 VPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVST 320 (376)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCEEEEC
T ss_conf 02456677775402210246666666543200012331011123433211256023225997999999988559908967
Q ss_pred -------------------------------------------------------E
Q ss_conf -------------------------------------------------------8
Q 001511 467 -------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------~ 467 (1064)
=
T Consensus 321 G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~~l 376 (376)
T d1eg5a_ 321 SSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFL 376 (376)
T ss_dssp ------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHCCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 61103886206699997399834479889996589899999999999999999639
|
| >d1wu4a1 a.102.1.2 (A:6-381) Xylanase Y {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: Xylanase Y species: Bacillus halodurans [TaxId: 86665]
Probab=100.00 E-value=0 Score=28327.09 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~g~~~~~~y~n~~~~~g~~q~~~~~k~~~~~~~~f~~~~~~~~y~~~~~~~~yv~d~~n~dv~SEGqgYGMl~Av~~~dr 80 (376)
T d1wu4a1 1 EGAFYTREYRNLFKEFGYSEAEIQERVKDTWEQLFGDNPETKIYYEVGDDLGYLLDTGNLDVRTEGMSYGMMMAVQMDRK 80 (376)
T ss_dssp CCHHHHCCCCCHHHHTTCCHHHHHHHHHHHHHHHHSSCC--CCEEEETTTEEEECBTTTTBEEHHHHHHHHHHHHHTTCH
T ss_pred CCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCH
T ss_conf 99764675552888828899999999999999981689766189971798558766799985556799999999980999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~FD~lw~wt~~~l~~~d~~~~~L~aW~~~~~g~v~d~n~AtDgDl~iA~ALl~A~~~Wg~~~~~~~~Y~~~A~~il~~i 160 (376)
T d1wu4a1 81 DIFDRIWNWTMKNMYMTEGVHAGYFAWSCQPDGTKNSWGPAPDGEEYFALALFFASHRWGDGDEQPFNYSEQARKLLHTC 160 (376)
T ss_dssp HHHHHHHHHHHHHTBCCSSTTTTSBCSEECTTSCBSCSCCCHHHHHHHHHHHHHHHHHHCCCSSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999985367777666715336799997889988767999999999999874887533356999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~nPSY~~P~~~~~fa~~a~~~~~~~W~~~~~~s~~ll~~~~~~~tGL~PDw~ 240 (376)
T d1wu4a1 161 VHNGEGGPGHPMWNRDNKLIKFIPEVEFSDPSYHLPHFYELFSLWANEEDRVFWKEAAEASREYLKIACHPETGLAPEYA 240 (376)
T ss_dssp HHTTSSSSCCCSBCTTTCCBCSSTTCSEECGGGCCHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHSCTTTCCCCSSE
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 98546788865103674455558887502801037899999998613477457999999999999971147879998425
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~dg~~~~~~~~~~~~yDA~Rvpl~ia~d~~w~g~~~~~~~~~~~~~~f~~~~~~~~~~~y~~dG~~~~~~~~~~~g~~a 320 (376)
T d1wu4a1 241 YYDGTPNDEKGYGHFFSDSYRVAANIGLDAEWFGGSEWSAEEINKIQAFFADKEPEDYRRYKIDGEPFEEKSLHPVGLIA 320 (376)
T ss_dssp ETTSSBCCTTSCSSBSGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCCGGGCEEECTTSCEEEEECSCHHHHHH
T ss_pred EECCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHH
T ss_conf 35895378778997750199999999977512575356799999999998634666688553368414677888679999
Q ss_pred -------------------------------------------------------E
Q ss_conf -------------------------------------------------------8
Q 001511 467 -------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~a~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~YY~~~L~Llall~lsG~~r~~~p 376 (376)
T d1wu4a1 321 TNAMGSLASVDGPYAKANVDLFWNTPVRTGNRRYYDNCLYLFAMLALSGNFKIWFP 376 (376)
T ss_dssp HHHHGGGGCTTCTTHHHHHHHHHTSCCCCSTTHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 99999997279716899999987234788888878999999999998298444179
|
| >d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Erwinia carotovora, subsp. carotovora [TaxId: 554]
Probab=100.00 E-value=0 Score=28326.48 Aligned_cols=1 Identities=100% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~T~aIq~AIdac~~Gg~V~iP~G~~~vyltg~i~LkSnv~L~l~~ga~L~~s~d~~ 80 (376)
T d1bhea_ 1 SDSRTVSEPKTPSSCTTLKADSSTATSTIQKALNNCDQGKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVTLRAVNNAK 80 (376)
T ss_dssp CCSSCCCCCCCCCEEEEEECCSSBCHHHHHHHHTTCCTTCEEEEECSSSSEEEESCEECCTTCEEEECTTCEEEECSCSG
T ss_pred CCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEECEEECCCCEEEEECCEEEEECCCHH
T ss_conf 98654578989975686789997369999999987779999999699745699804897888789991997999738979
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~i~~~~~~Ni~ItG~G~IDG~G~~~~~~~~~~~~~~~~~~~~~~~~~~rP~~i~~~~~~ 160 (376)
T d1bhea_ 81 SFENAPSSCGVVDKNGKGCDAFITAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSK 160 (376)
T ss_dssp GGBSSTTCSSCEESCSCCBCCSEEEESCBSCEEECSSEEECCTTSCCSSSSSCTTHHHHHHHHHTCEECCCCSEEEESCE
T ss_pred HCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEECCEEECCCCEEECCCCCCHHCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 96566630236751576541268824863079972768813344162277641000123444466777897699999115
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 nv~i~~iti~ns~~~~~~~~~~~~v~i~n~~I~~~~~~~NtDGidi~~s~nv~I~n~~i~~gDD~i~~ks~~~~~~~~ni 240 (376)
T d1bhea_ 161 NFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNI 240 (376)
T ss_dssp EEEEEEEEEECCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCEEECSSCSEEEEECTTSCCEEEE
T ss_pred CEEEEEEEEECCCCEEEEEECCCEEEEEEEECCCCCCCCCCCEEECCCCCEEEEEECEEECCCCCEEEECCCCCCCCCEE
T ss_conf 68997039955993699996885599996750588657776340025645099982533048981566046677774459
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~i~n~~~~~~~g~~iGs~~~~v~nv~i~n~~~~~~~~g~~Iks~~~~gG~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~ 320 (376)
T d1bhea_ 241 SILHNDFGTGHGMSIGSETMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGS 320 (376)
T ss_dssp EEEEEEECSSSCEEEEEEESSEEEEEEEEEEEESCSEEEEEECCTTTCCEEEEEEEEEEEEESCSEEEEEETTSSCCCCC
T ss_pred EEEEEEEECCCCCEECCCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 99963896688730645668778899993258688704789825887607989999968993667448998144788888
Q ss_pred -------------------------------------------------------E
Q ss_conf -------------------------------------------------------8
Q 001511 467 -------------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~i~nIt~~Ni~~~~~~~~~l~g~~~~~~~~v~~~nv~i~~~~~~~~~nv~~k~ 376 (376)
T d1bhea_ 321 NVPDWSDITFKDVTSETKGVVVLNGENAKKPIEVTMKNVKLTSDSTWQIKNVNVKK 376 (376)
T ss_dssp CCCEEEEEEEEEEEECSCCEEEEECTTCSSCEEEEEEEEECCTTCEEEEESEEEEC
T ss_pred CCCEEEEEEEEEEEEECCEEEEEECCCCCCCEEEEEEEEEEECCCCCEEEEEEECC
T ss_conf 79779518999079935325999868888823699984899759888788055329
|
| >d2fug41 e.18.1.2 (4:35-409) NADH-quinone oxidoreductase chain 4, Nqo4 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: HydB/Nqo4-like superfamily: HydB/Nqo4-like family: Nqo4-like domain: NADH-quinone oxidoreductase chain 4, Nqo4 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=28258.80 Aligned_cols=1 Identities=0% Similarity=0.138 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 p~~hG~~r~~~~v~ge~V~~a~~~ig~~~RGfEk~l~Gr~~~da~~i~~RICGIC~~aH~~A~~~AlE~a~gv~~p~~a~ 80 (375)
T d2fug41 1 PSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAE 80 (375)
T ss_dssp CEEECSSSCEEEECCSSSCCEEEECCTTCCCHHHHGGGSCHHHHHHHGGGTTSSSHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCCCEEEEEEEECCCEEEEEEEEECCCCHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99885289999976988999898306652689998749996882212063111038799999999999991998899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~lR~l~~~~e~i~sH~l~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~G~~~h~~~~~~gG~~~~~~~~~~~~~~~~~ 160 (375)
T d2fug41 81 TIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVPELKKLL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTSSSSSCCCEETTEESSCCCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCEECCCEEECCCHHHHHHHHHHH
T ss_conf 99999999988767999999834520024388899999899999999846865520521202302279867889999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 240 (375)
T d2fug41 161 EVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYETYTFDVPLGERGDVFD 240 (375)
T ss_dssp TTTTTTTHHHHHHHSSCSCCTTSCSCCCCSSSCSTTTTTTCCSSCCSSCCTTTTTCCSSCCCC-----CCCCCCSSSSHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76088778898740367500002577533451023315765554555642133120067554556565534424776432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~g~vEApRG~L~ 320 (375)
T d2fug41 241 RMLVRIREMRESVKIIKQALERLEPGPVRDPNPQITPPPRHLLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESARGELG 320 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCSCCBCCCTTTSCCCTTCTTTCTTHHHHHHHHHHSCCCCCSCCCCCCBCCSSSCBC
T ss_pred CCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCEEEE
T ss_conf 10213444421468999899748898744344110335699997554541013444566776899579999974886799
Q ss_pred ------------------------------------------------------E
Q ss_conf ------------------------------------------------------8
Q 001511 467 ------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------~ 467 (1064)
.
T Consensus 321 H~~~~d~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 375 (375)
T d2fug41 321 YYIVSDGGSMPYRVKVRAPSFVNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 375 (375)
T ss_dssp EEEECCSSSSCSEEEECCSHHHHTTTHHHHTTTSCGGGTTHHHHTTCCCHHHHHC
T ss_pred EEEEECCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999989981899999898877999999996799167899998567976447898
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=28256.61 Aligned_cols=1 Identities=100% Similarity=2.230 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~i~EG~~~i~vp~~~~~~~~~vFYNp~q~~NRDlsvl~~~~~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~ 80 (375)
T d2dula1 1 LIEVQEGKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISED 80 (375)
T ss_dssp CEEEEETTEEEEEC--------CCCCCGGGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHH
T ss_pred CEEEEECCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCHH
T ss_conf 94899586899941787778788242877764107999999973998799868774099999998589978998259989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~v 160 (375)
T d2dula1 81 AYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGV 160 (375)
T ss_dssp HHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999986375432211243323554336741004556567515767744578888817999999997044877999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 TaTD~a~L~G~~~~~~~r~Yg~~~~~~~~~~E~glRill~~i~r~Aa~~~~~i~PllS~~~~~y~Rv~vrv~~~~~~~~~ 240 (375)
T d2dula1 161 TATDGAPLCGAHPRACLRKYLAVPLRGELCHEVGTRILVGVIARYAAKYDLGIDVILAYYKDHYFRAFVKLKDGARKGDE 240 (375)
T ss_dssp EECCHHHHTTSSHHHHHHHHSSBCCCSTTHHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEETTEEEEEEEEEESHHHHHH
T ss_pred EECCCHHHCCCCCHHHHHHHCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEECCHHHHHH
T ss_conf 93686120479917899972876137866501889999999999987429805999999824607999999137677887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~g~~~~C~~c~~~~~~~~~~~~~~~~~GPlW~G~L~d~efl~~~~~~~~~~~~~~~~~~~~ll~~i~eE~~~P~~y 320 (375)
T d2dula1 241 TLEKLGYIYFDDKTGKFELEQGFLPTRPNAYGPVWLGPLKDEKIVSKMVKEAESLSLARKKQALKLLKMIDQELDIPLFY 320 (375)
T ss_dssp HHTTEEEEEECTTTCCEEEEESSSCCSSSCEEEEECSCSBCHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHSCCSSCCE
T ss_pred HHHHCCCEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 88744817871898877775588999787867883673369999999998754057540569999999998614998298
Q ss_pred ------------------------------------------------------E
Q ss_conf ------------------------------------------------------8
Q 001511 467 ------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~l~~la~~lk~~~P~~~~~~~aL~~~Gy~asrtH~~p~~iKTdAp~~~i~~i~r~ 375 (375)
T d2dula1 321 DTHAIGRRLKIETKKVEEIISALREQGYEATRTHFSPTGIKTSAPYEVFIETIKR 375 (375)
T ss_dssp EHHHHHHHHTCCBCCHHHHHHHHHHTTCCEEEETTEEEEEEESSCHHHHHHHHBC
T ss_pred CHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCEECCCCHHHHHHHHHC
T ss_conf 5799998739999999999999997898899657899977137999999999709
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=28255.43 Aligned_cols=1 Identities=0% Similarity=0.636 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~r~~~~~~~~~~~~~~~a~~~~~~G~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~ 80 (375)
T d1o4sa_ 1 VSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGE 80 (375)
T ss_dssp CCHHHHHSCCCSSHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 94546548977899999999999977998589989588997889999999999855876889986789999999864332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
T d1o4sa_ 81 RYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG 160 (375)
T ss_dssp HHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 15655433323346728999999999981899989982586543102321122222233344332356136777775235
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~ 240 (375)
T d1o4sa_ 161 KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGW 240 (375)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGG
T ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCCCC
T ss_conf 76379981899885577999999999986887098124674003001333332112355778978999405142058866
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~g~~~~~p~gg~f~~~~~ 320 (375)
T d1o4sa_ 241 RVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKV 320 (375)
T ss_dssp CCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSBSSEEEEEC
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEC
T ss_conf 44543233331012232212344333320002334321121023678889999999987874495685689407999979
Q ss_pred ------------------------------------------------------E
Q ss_conf ------------------------------------------------------8
Q 001511 467 ------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~~~e~l~~al~rl~~~l~~ 375 (375)
T d1o4sa_ 321 RGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLNS 375 (375)
T ss_dssp SSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 9997999999998599999976115899969999728999999999999999659
|
| >d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal domain {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Pyruvate phosphate dikinase, N-terminal domain domain: Pyruvate phosphate dikinase, N-terminal domain species: Clostridium symbiosum [TaxId: 1512]
Probab=100.00 E-value=0 Score=28257.37 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~k~v~~f~e~~~~d~~lvGGK~AnLgel~~~G~pVP~GFviTt~Ay~~Fl~~n~~~~~~l~~~i~~~l~~l~~~~~~~~~ 80 (375)
T d1kbla3 1 AKWVYKFEEGNASMRNLLGGKGCNLAEMTILGMPIPQGFTVTTEACTEYYNSGKQITQEIQDQIFEAITWLEELNGKKFG 80 (375)
T ss_dssp CCCEEEGGGCCGGGHHHHHHHHHHHHHHHHTTCCCCCEEEECHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHTSCBT
T ss_pred CCEEEECCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 97789887799023643828899899999783998998885099999999826657487999999999866643275446
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (375)
T d1kbla3 81 DTEDPLLVSVRSGARASMPGMMDTILNLGLNDVAVEGFAKKTGNPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKE 160 (375)
T ss_dssp CSSSCBCEEEEEECSSCCTTSSCEEEEETCCTTHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 54320121010013432100014676630350456667651343233211310255542000011015678888876653
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~q~~~~~~a~gv~~t~~~~~~~~~~~~i~~~~glg~~vv~ 240 (375)
T d1kbla3 161 EKGVHFDTDLTADDLKELAEKFKAVYKEAMNGEEFPQEPKDQLMGAVKAVFRSWDNPRAIVYRRMNDIPGDWGTAVNVQT 240 (375)
T ss_dssp HTCCCSGGGCCHHHHHHHHHHHHHHHHTTTTTCCCCCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCCGGGCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEECCCCCCCCCEEEC
T ss_conf 04337777767888999999999999875148865553024445530146773146655554420341466666630102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~eLa~~a~~iE~~yG~PqD 320 (375)
T d1kbla3 241 MVFGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGVRTPQPITQLENDMPDCYKQFMDLAMKLEKHFRDMQD 320 (375)
T ss_dssp CCCTTSSTTCEEEEEEEECTTTCCEEEEEEEEESCCHHHHHHTSSCCEEGGGHHHHCHHHHHHHHHHHHHHHHHHTSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEECCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 21057774226641245675444321122000013466642431226654431321808999999999999998199614
Q ss_pred ------------------------------------------------------E
Q ss_conf ------------------------------------------------------8
Q 001511 467 ------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------~ 467 (1064)
-
T Consensus 321 IEWAi~dG~l~ILQaRPv~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T d1kbla3 321 MEFTIEEGKLYFLQTRNGKRTAPAALQIACDLVDEGMITEEEAVVRIEAKSLDQL 375 (375)
T ss_dssp EEEEEETTEEEEEEEEECCCCHHHHHHHHHHHHHTTSSCHHHHHHHSCGGGGGGG
T ss_pred EEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHCCC
T ss_conf 6999999989999766788657869999999998699799999872794211229
|
| >d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of family B DNA polymerases species: Bacteriophage RB69 [TaxId: 12353]
Probab=100.00 E-value=0 Score=28256.76 Aligned_cols=1 Identities=0% Similarity=1.334 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 m~~fyt~v~~~gn~i~~rg~d~nG~r~~~~~~f~Py~Yv~~~~~~~t~~ksl~G~~v~~v~f~s~~e~r~~~k~~~~~~~ 80 (375)
T d1ih7a1 1 MKEFYLTVEQIGDSIFERYIDSNGRERTREVEYKPSLFAHCPESQATKYFDIYGKPCTRKLFANMRDASQWIKRMEDIGL 80 (375)
T ss_dssp CCCEEEEEEEETTEEEEEEECTTSCEEEEEECCCCEEEEECCTTSCCSCEETTSCBEEEEECSSHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCEEEECCEEEEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 98644022799999999999679989999954730699988999864534148817666746988999999997155543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~v~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~DIE~~~~~~~p~~~~~~~~i~~I~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
T d1ih7a1 81 EALGMDDFKLAYLSDTYNYEIKYDHTKIRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVE 160 (375)
T ss_dssp CCBSCCCHHHHHHHHHTCSCCCCCGGGSCEEEEEEEECCSSSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCTTCCCC
T ss_pred EECCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCC
T ss_conf 11256641201012357654566754220455788970576656864232100011246615880999996377756654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~sE~eLL~~F~~~~~~~dPDiitGwN~~~FD~pYL~~R~~~~~~~~~~~ 240 (375)
T d1ih7a1 161 EWSIEIAAKLQEQGGDEVPSEIIDKIIYMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFDIPYVYNRIKNIFGESTAK 240 (375)
T ss_dssp CCCHHHHHSCTTTTCCCCCHHHHTTEEEEEESSHHHHHHHHHHHHHHSCCSEEEETTTTTTHHHHHHHHHHHHHCHHHHG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCHHHHH
T ss_conf 32212233311124555655567985999829999999999999876498899871777887099999998640100233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~D~~~~~~~~~~~~~~s~~l~~v~~~~l~~~K~~~~~~~~~~~~~d~~~~ 320 (375)
T d1ih7a1 241 RLSPHRKTRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESNHQRY 320 (375)
T ss_dssp GGSTTSCEEEEEEECSSCEEEEEEETTCEEEEHHHHHHHHSSCCCSCCSHHHHHHHHTCCCCCCCSSCGGGHHHHHHHHH
T ss_pred HHHHCCCCCEEEEEEECCCCCEECCCCCEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCHHHH
T ss_conf 44423785079998512554011035640002899998753023210005678888751466557555999987494686
Q ss_pred ------------------------------------------------------E
Q ss_conf ------------------------------------------------------8
Q 001511 467 ------------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~Y~~~D~~L~~~L~~kl~~i~~~~~~a~~~~v~~~~v~~q~~~~~~li~~~~~~ 375 (375)
T d1ih7a1 321 ISYNIIDVYRVLQIDAKRQFINLSLDMGYYAKIQIQSVFSPIKTWDAIIFNSLKE 375 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSCGGGGGCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6520998999999999872899999999987959899738999999999999529
|
| >d1txka2 b.30.5.9 (A:23-396) Glucans biosynthesis protein G (MdoG, OpgG), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Supersandwich superfamily: Galactose mutarotase-like family: MdoG-like domain: Glucans biosynthesis protein G (MdoG, OpgG), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28188.97 Aligned_cols=1 Identities=0% Similarity=0.536 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
|
T Consensus 1 F~f~~l~~~Ar~lA~~py~~p~~~lP~~l~~L~Yd~yr~Irf~~~~alW~~~~~~f~v~~fh~G~~f~~pV~i~~V~~g~ 80 (374)
T d1txka2 1 FSIDDVAKQAQSLAGKGYETPKSNLPSVFRDMKYADYQQIQFNHDKAYWNNLKTPFKLEFYHQGMYFDTPVKINEVTATA 80 (374)
T ss_dssp CCHHHHHHHHHHHHTSCCCCCCCCCCCC----CHHHHTTCEECGGGCBTTTSSCSCEEEEEECBTTBCSCBEEEEECSSC
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCE
T ss_conf 98799999999985189889876689878729998971636486521105799998787627876679877999970995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~i~fd~~~F~y~~~~~~~~~~~~~GfAGFRl~~pln~~~~~de~~~FlGASYFRavg~g~~YGlSARGLAIdTa~~~g 160 (374)
T d1txka2 81 VKRIKYSPDYFTFGDVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVIGAGQVYGLSARGLAIDTALPSG 160 (374)
T ss_dssp EEECCCCGGGEECTTSCCCTTTSTTCCEEEEEEEECSSCTTCCEEEEEEESTTEEEECCTTCCCCCEEESCEESTTCTTC
T ss_pred EEEEECCHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCHHHEEEECCCCCCCCCHHHEECCCCCCCC
T ss_conf 68810188996678877784556678730599963467887443167771620224534897366311010005799987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 EEFP~F~~FWle~P~~~~~~~~vyALLDspSvtGAYrF~i~PG~~t~~dV~a~Lf~R~~v~~lGiAPLTSMf~~ge~~~~ 240 (374)
T d1txka2 161 EEFPRFKEFWIERPKPTDKRLTIYALLDSPRATGAYKFVVMPGRDTVVDVQSKIYLRDKVGKLGVAPLTSMFLFGPNQPS 240 (374)
T ss_dssp CBCCEEEEEEEECCCTTCCCEEEEEEEEETTEEEEEEEEEECSSSEEEEEEEEEEESSCCSCEEEEEEEECEEEBTTBCC
T ss_pred CCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEEEECCCCCCCCCCCHHHHHCCCCCCCC
T ss_conf 67987748996657899976999999239741007999997599889999889980676121350211365306898899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~dD~RPeVHDSDGL~i~~g~GE~iWRPL~NP~~l~~S~f~d~~p~GFGLlQRdR~F~~YqD~ea~Ye~RPSlWVeP~gd 320 (374)
T d1txka2 241 PANNYRPELHDSNGLSIHAGNGEWIWRPLNNPKHLAVSSFSMENPQGFGLLQRGRDFSRFEDLDDRYDLRPSAWVTPKGE 320 (374)
T ss_dssp SSCCSCSCEESCCEEEEECTTSCEEEEECCCCSSCEEEEEEEESCCEEEEECCCCCGGGTCCTTTCGGGCCEEEEEESSC
T ss_pred CCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCEEEEEECCCCCCCCCEECCCCHHHHCCCHHHHCCCCEEEEEECCC
T ss_conf 88987875525664379737996782368898862175675589863233613777232306413233487378876676
Q ss_pred -----------------------------------------------------E
Q ss_conf -----------------------------------------------------8
Q 001511 467 -----------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------~ 467 (1064)
.
T Consensus 321 WG~G~V~LvEIPT~~E~~DNIVAfW~P~~~~~~G~~~~f~Yrl~W~~~~p~~h~ 374 (374)
T d1txka2 321 WGKGSVELVEIPTNDETNDNIVAYWTPDQLPEPGKEMNFKYTITFSRDEDKLHA 374 (374)
T ss_dssp CCEEEEEEEECCCSCTTSCCEEEEEEESCCCCTTCEEEEEEEEEEESCGGGGSC
T ss_pred CCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCC
T ss_conf 778679999768997243658999767887899996989989974789876679
|
| >d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Citrate synthase superfamily: Citrate synthase family: Citrate synthase domain: Citrate synthase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=28182.63 Aligned_cols=1 Identities=0% Similarity=1.500 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 v~rGL~Gv~v~eS~Is~IDg~~G~L~YRG~~i~dLa~~~sfEEVa~LL~~G~LP~~~el~~f~~~l~~~~~lp~~~~~~l 80 (374)
T d1ioma_ 1 VARGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQELEEFSAALARRRALPAHLLESF 80 (374)
T ss_dssp CCGGGTTCCCSCCSSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCSCCHHHHHHH
T ss_pred CCCCCCCCEEEEEECEEEECCCCEEEECCEEHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99888998485655636748988899988559998703999999999978969799999999999997047988898999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~p~~~~pm~~l~~~vs~l~~~~~~~~~~~~~~~~~~~~~lia~~~~i~a~~~~~~~g~~~~~p~~~~s~a~n~l~m~~ 160 (374)
T d1ioma_ 81 KRYPVSAHPMSFLRTAVSEFGMLDPTEGDISREALYEKGLDLIAKFATIVAANKRLKEGKEPIPPREDLSHAANFLYMAN 160 (374)
T ss_dssp TTSCTTSCHHHHHHHHHHHHHHTCTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 85343421157777766652125752223310689999998624305788899998469877788603679999877623
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 g~~p~~~~~~~l~~~lvl~aDHg~n~St~aaR~~aSt~~d~~~av~agl~al~GplhGga~~~~~~~l~e~~~~~~~~~~ 240 (374)
T d1ioma_ 161 GVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGTPERAREW 240 (374)
T ss_dssp SSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHEEEECCCCCCCCHHHEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHH
T ss_conf 89999899999875613452588765122422554058747788888887337866786528999999850675354999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 v~~~l~~~~~i~GfGH~vy~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~pNvd~~~~~l~~~l 320 (374)
T d1ioma_ 241 VREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDL 320 (374)
T ss_dssp HHHHHHTTCCCTTBSCSSCSSCCTTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTTCCBCHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC
T ss_conf 99998678877776764333553237999999998776427722789999998432430266898878689999999984
Q ss_pred -----------------------------------------------------E
Q ss_conf -----------------------------------------------------8
Q 001511 467 -----------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------~ 467 (1064)
.
T Consensus 321 Gip~~~~~~lf~i~R~~Gw~AH~~E~~~~~~~l~RP~~~Y~G~~~r~~~p~~~R 374 (374)
T d1ioma_ 321 GFSLEFFTPIFAVARISGWVGHILEYQELDNRLLRPGAKYVGELDVPYVPLEAR 374 (374)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCSCSSCCCCCGGGC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 988565559999999999999999998557985277540069999988676669
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=100.00 E-value=0 Score=28180.15 Aligned_cols=1 Identities=100% Similarity=-0.394 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~e~~~~~~~l~~~~~~~~G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~~~ 80 (374)
T d1o69a_ 1 GNELKYIEEVFKSNYIAPLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICY 80 (374)
T ss_dssp CCHHHHHHHHHHHTTTSCTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHH
T ss_conf 93899999999639807899899999999999978295999678799999999986988839999499661743799843
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~g~~pv~~Di~~~~~~~~~~~~~~~~~~~~~~~aii~~~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~ 160 (374)
T d1o69a_ 81 LKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGT 160 (374)
T ss_dssp TTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCEECCEECCC
T ss_conf 44505734665321012123342100001233201111133310336888987651694410222342145678840688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~gd~~~fSf~~~K~l~tgeGG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~ 240 (374)
T d1o69a_ 161 FGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLK 240 (374)
T ss_dssp SSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH
T ss_conf 77557894257646534665222133689998530222233333333333458864244624566667777665431004
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~ 320 (374)
T d1o69a_ 241 KREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPL 320 (374)
T ss_dssp HHHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 67899998864024323333456787773140233034433224310000000010001210999999999879987873
Q ss_pred -----------------------------------------------------E
Q ss_conf -----------------------------------------------------8
Q 001511 467 -----------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------~ 467 (1064)
+
T Consensus 321 y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~lk 374 (374)
T d1o69a_ 321 WKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK 374 (374)
T ss_dssp CCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHCHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 854342966534787899899999839898969887799999999999999979
|
| >d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Hect, E3 ligase catalytic domain superfamily: Hect, E3 ligase catalytic domain family: Hect, E3 ligase catalytic domain domain: WW domain-containing protein 1, WWP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28179.92 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~f~~~~~~~~~~~~~~i~V~R~~l~~d~~~~l~~~~~~~l~~~l~V~F~gE~g~D~GG~~rEff~~l~~el 80 (374)
T d1nd7a_ 1 HMGFRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEV 80 (374)
T ss_dssp CCTHHHHHHHHHHHHHHTCCSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETTTCCCCCTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 96378999999988761689885599976565899999999716989847876999789874478711999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~p~~~lf~~~~~~~~~~~~~p~~~~~~~~~~~f~~lG~lig~al~~~~~~~~~f~~~f~k~Llg~~~t~~DL~~iD~~~ 160 (374)
T d1nd7a_ 81 LNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEF 160 (374)
T ss_dssp TCGGGSSEEESSSSSCCEEECGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHTTCHHH
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCHHH
T ss_conf 08866875664798855355874436805899998857999999984961387756899988549989899998857898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~sl~~l~~~~~e~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~VT~~N~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~v 240 (374)
T d1nd7a_ 161 YNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEV 240 (374)
T ss_dssp HHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 87499998546410466035787751278742254478997652068789999999999997211789999999869876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ip~~~l~~f~~~eL~~licG~~~id~~~l~~~~~y~gy~~~s~~i~~fw~vl~~~t~ee~~~fL~FvTGs~rlP~~G~~~ 320 (374)
T d1nd7a_ 241 VPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAE 320 (374)
T ss_dssp SCGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEESCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGG
T ss_pred CCHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHEEECCCCCCCCCCHHH
T ss_conf 79898764889999986279987788999643261367899889999999877069999987446636899889864565
Q ss_pred -----------------------------------------------------E
Q ss_conf -----------------------------------------------------8
Q 001511 467 -----------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------~ 467 (1064)
+
T Consensus 321 l~~~~~~~~~~i~~~~~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~e 374 (374)
T d1nd7a_ 321 LMGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE 374 (374)
T ss_dssp CEETTEECCEEEECCSCTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred HCCCCCCCCEEECCCCCCCCCCCHHHHHCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 435678875131468999999705440267669898899999999999997149
|
| >d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NagB/RpiA/CoA transferase-like superfamily: NagB/RpiA/CoA transferase-like family: IF2B-like domain: Initiation factor 2b species: Leishmania major [TaxId: 5664]
Probab=100.00 E-value=0 Score=28179.35 Aligned_cols=1 Identities=0% Similarity=0.802 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~~~~l~si~~~~~~v~ilDQ~~LP~~~~~~~~~t~~~v~~AIk~M~VRGAPaIgvaaA~glala~~~~~~~~~~~s 80 (374)
T d2a0ua1 1 MSKPHHATLESIKYTPGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPAIAVSAALGIAVATQRKAANGELKS 80 (374)
T ss_dssp CCCCSSCCCCSEEEETTEEEEECTTTTTTCCCEEEECSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCEEEEEEECCEEEEEECCCCCCCEEEEEECCHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 99887895016999699999985788998179999699999998856370259429999999999999985222753001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~el~~~L~~a~~~L~~sRPTAVNL~nAv~rv~~~i~~~~~~~s~~e~~~~ll~~A~~i~~eD~~~n~~Ig~~Ga~li~e 160 (374)
T d2a0ua1 81 GREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFVELAEAVYTNDVAFNEGIMRHGAAHILA 160 (374)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSCSHHHHHHHHHHHHHHHSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999985597542256899999999864287778999999999999999999999999999978999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~ilThcn~g~Lat~~~gtal~~i~~a~~~gk~~~V~v~EtRP~~qG~rlta~~L~~~gi~~t~i~Dsa~~ 240 (374)
T d2a0ua1 161 AAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAAS 240 (374)
T ss_dssp HHHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHTTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHH
T ss_pred HHHHCCCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCCHH
T ss_conf 88621788732676416753375113224677678997698617998046433464689999998616771899545256
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~m~~~~v~~VivGad~v~~nG~v~nkiGT~~~A~~A~~~~vP~~v~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~ 320 (374)
T d2a0ua1 241 SLMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLVTK 320 (374)
T ss_dssp HHHHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCTTCCSGGGSCCCBCCTHHHHBCTTTC
T ss_pred HHHHCCCEEEEEECCEEEEECCCEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
T ss_conf 66205642589852318984697886246499999999749988999115642767799775646678967734334566
Q ss_pred -----------------------------------------------------E
Q ss_conf -----------------------------------------------------8
Q 001511 467 -----------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~~~~~v~np~fD~tP~~lIt~~iiTe~G~~~P~~~~~~~~~~~~~~~~ 374 (374)
T d2a0ua1 321 QRVVADGPHLSIWNPVFDITPSELITGGIITEKGVQAPAASAPYYDIASIIAQA 374 (374)
T ss_dssp CBCSCCCTTEEECCBSEEEECGGGCCSEEECSSCEECCCSSSSCCCHHHHHHCC
T ss_pred CEECCCCCCCCEECCCCCCCCHHHCCCEEECCCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 120257888602486831789699499788889861655467721479896239
|
| >d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: ERO1-like superfamily: ERO1-like family: ERO1-like domain: Endoplasmic oxidoreductin 1, Ero1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=28176.86 Aligned_cols=1 Identities=0% Similarity=-0.560 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~s~~~vd~~N~~i~p~L~~L~~~dyFRyfkVnL~~~CPFW~~d~~~C~~~~C~V~~c~dee~iP~~~~~~~~~~~~~~~~ 80 (374)
T d1rp4a_ 1 GSFNELNAINENIRDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWDTLPEYWQPEILGSFNNDTM 80 (374)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSTTTSEEEEESSCCCSSSCSSSSCCCTTTTBCCCSSCGGGSCGGGSHHHHTCCCTTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 97878999899988999986378960434338899898999432574998998803775565861024101046664112
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dfC~~dD~~~~~~~YVdLl~NPERyTGY~G~~a~~IW~~IY~ENCF~~~~ 160 (374)
T d1rp4a_ 81 KEADDSDDECKFLDQLCQTSKKPVDIEDTINYCDVNDFNGKNAVLIDLTANPERFTGYGGKQAGQIWSTIYQDNCFTIGE 160 (374)
T ss_dssp EECCTTCGGGSBHHHHSSTTTSSCCSSSCCCHHHHTTCCCTTEEEEETTTSCCCCCCBCHHHHHHHHHHHHHTCCCCTTS
T ss_pred HHCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 21145653002204033320355554431101334456777754766300856235888873788999999975789876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~c~ekrvfyrlISGlHsSIs~Hl~~~yl~~~~~~w~pN~~~f~~R~g~~p~rl~NLYF~y~~~LrAl~k~~~~l~~~~ 240 (374)
T d1rp4a_ 161 TGESLAKDAFYRLVSGFHASIGTHLSKEYLNTKTGKWEPNLDLFMARIGNFPDRVTNMYFNYAVVAKALWKIQPYLPEFS 240 (374)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHSEEETTTTEEECCHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHGGGCCCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 43107788999988888888999998764167767637899999999736838889899999999999998888886467
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~l~~~~~~~~fde~~~f~~~~~~~lk~efr~~frnisriMDCV~CeKCrLwGKlQt~GlgtALKIL 320 (374)
T d1rp4a_ 241 FCDLVNKEIKNKMDNVISQLDTKIFNEDLVFANDLSLTLKDEFRSRFKNVTKIMDCVQCDRCRLWGKIQTTGYATALKIL 320 (374)
T ss_dssp TTSSTTTTHHHHHHHHHHTTCCGGGGSCTTCTTTSCHHHHHHHHHHHHHHHHGGGGCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 77877789999999999871666678888538841399999999999999999716676376756899887799999998
Q ss_pred -----------------------------------------------------E
Q ss_conf -----------------------------------------------------8
Q 001511 467 -----------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------~ 467 (1064)
.
T Consensus 321 f~~~~~~~~~~~~~~~~L~R~ElvALiNt~~rlS~SI~~v~~F~~m~~~~~~~~ 374 (374)
T d1rp4a_ 321 FEINDADEFTKQHIVGKLTKYELIALLQTFGRLSESIESVNMFEKMYGKRLLER 374 (374)
T ss_dssp HHHHTCCHHHHHHHHHTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 535553346766664554599999999999999999999999999999764129
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=0 Score=28176.85 Aligned_cols=1 Identities=0% Similarity=-0.792 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~P~LF~Pl~Ig~~~lkNRiv~apm~~~~~~dg~~t~~~~~yy~~rA~gGlii~e~~~V~~~~~~~~~~~~i~~d~~ 80 (374)
T d1gwja_ 1 TSFSNPGLFTPLQLGSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRASAGLIISEATNISPTARGYVYTPGIWTDAQ 80 (374)
T ss_dssp CCCCCCCTTSCEEETTEEESCSEEECCCCCCCCSSSCCCHHHHHHHHHTTTSSEEEEEEEESSGGGCCBTTCCBCSSHHH
T ss_pred CCCCCCCCCCCEEECCEEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCHHHH
T ss_conf 99994999998418998978875874458988999998799999999984878799974798886578889873555554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 i~~~k~l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ 160 (374)
T d1gwja_ 81 EAGWKGVVEAVHAKGGRIALQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDGIPG 160 (374)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 15666689998605862676554168655545588887100035556667655443565544567878860049999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ii~~f~~AA~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~ 240 (374)
T d1gwja_ 161 IVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFL 240 (374)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 99999999999998099888732220346778887535764454343121100567889998998838753225553100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~ae~~l~~g~aD 320 (374)
T d1gwja_ 241 ELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCGNYDAGRAQARLDDNTAD 320 (374)
T ss_dssp CCTTCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBCCCCCTTHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCS
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCC
T ss_conf 23687653247888876413110472277751576457886524999999998738878997895999999999869974
Q ss_pred -----------------------------------------------------E
Q ss_conf -----------------------------------------------------8
Q 001511 467 -----------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------~ 467 (1064)
-
T Consensus 321 lV~~gR~~iadPd~~~K~~~G~~l~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~ 374 (374)
T d1gwja_ 321 AVAFGRPFIANPDLPERFRLGAALNEPDPSTFYGGAEVGYTDYPFLDNGHDRLG 374 (374)
T ss_dssp EEEESHHHHHCTTHHHHHHHTCCCCCCCGGGSSSSSSTTTTCCCCCCCSSCCCC
T ss_pred EEHHHHHHHHCCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHCC
T ss_conf 844669998792299999759988888841125799988387888542235319
|
| >d1so7a_ b.68.1.1 (A:) Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Sialidase 2 (Neu2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28171.19 Aligned_cols=1 Identities=100% Similarity=0.636 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~p~~~~~~~f~~g~~~yRiP~lv~~~~g~~l~A~a~~r~~~~d~~~~~iv~~rS~D~G~T~~~~Ws~~~~v~~~~~~~~~ 80 (374)
T d1so7a_ 1 LPVLQKESVFQSGAHAYRIPALLYLPGQQSLLAFAEQRASKKDEHAELIVLRRGDYDAPTHQVQWQAQEVVAQARLDGHR 80 (374)
T ss_dssp CCCSEEEEEEECTTCCEEEEEEEEETTTTEEEEEEEECC-------CEEEEEEEEEEGGGTEEEECCCEECTTSCCTTEE
T ss_pred CCCCCEEEEEECCCCCEEECEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCE
T ss_conf 99431267768895368647799985999999999687677668987699999637883043466798994778989955
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~p~~~~d~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~p~~i~~~~~~~~~~~~~~~~~~~~~ 160 (374)
T d1so7a_ 81 SMNPCPLYDAQTGTLFLFFIAIPGQVTEQQQLQTRANVTRLCQVTSTDHGRTWSSPRDLTDAAIGPAYREWSTFAVGPGH 160 (374)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSCCHHHHHCTTCCCCEEEEEEESSTTSSCCCCEECHHHHHGGGGGGEEEEEECSSC
T ss_pred EEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCEEEEEECCC
T ss_conf 56212789899997999998506877653224688885408999688886335686026610145435774366520233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~r 240 (374)
T d1so7a_ 161 CLQLNDRARSLVVPAYAYRKLHPIQRPIPSAFCFLSHDHGRTWARGHFVAQDTLECQVAEVETGEQRVVTLNARSHLRAR 240 (374)
T ss_dssp CEECCSTTCCEEEEEEEEECCSSSSCCEEEEEEEEESSTTSSCEECCCCSBSEEEEEEEEEEC--CEEEEEEEEESSSEE
T ss_pred CEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCE
T ss_conf 12664048868866676516766678971499999358754110156568888422588851456643677425478967
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~S~D~G~tW~~~~~~~~l~~~~~~~~~~s~i~~~~~~~~~~~~~~~ll~~~p~~~~~r~~~~l~l~~S~D~G~tW~~ 320 (374)
T d1so7a_ 241 VQAQSTNDGLDFQESQLVKKLVEPPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAPEAWSE 320 (374)
T ss_dssp EEEEESSTTSSCCCCEEEEEEECCTTTCCCCEEEEEECCCC----CSEEEEEEEECCSSSSEEEEEEEESSTTCGGGCCC
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCEECCC
T ss_conf 99996279966543202333448888885314898335434444688369983788988887608999998889916478
Q ss_pred -----------------------------------------------------E
Q ss_conf -----------------------------------------------------8
Q 001511 467 -----------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~i~~g~~~YS~~~~~~dg~~~~~~i~~lyE~~~~~~i~f~~~~l~~~~~~~~ 374 (374)
T d1so7a_ 321 PVLLAKGSCAYSDLQSMGTGPDGSPLFGCLYEANDYEEIVFLMFTLKQAFPAEY 374 (374)
T ss_dssp CEEEEEEEEEEEEEEEEEECTTSSEEEEEEEEETTTTEEEEEEEEHHHHCGGGC
T ss_pred CEEECCCCCCCCHHEECCCCCCCCEEEEEEEECCCCCEEEEEEEEHHHHCCCCC
T ss_conf 548688997684525867998885699999956997657999989999175779
|
| >d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Glutamine synthetase/guanido kinase superfamily: Glutamine synthetase/guanido kinase family: Glutamine synthetase catalytic domain domain: Glutamine synthetase, C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=28175.86 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~DPR~iLkk~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T d2bvca2 1 SRDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADGSPNRGYKVRHKG 80 (374)
T ss_dssp TTCHHHHHHHHHHHHHHHSSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTBGGGTTCSBCTTSCBCCCCCBCTTC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEECEEEEEECCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98869999999999997799870357726589997145445566776201363000246787656788887786656566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~i~~~l~~~Gi~~~~~~~E~~~~gQ~Ei~~~~~~~l~aAD~~~~~k~~ik~vA~~~G~~atFmp 160 (374)
T d2bvca2 81 GYFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMP 160 (374)
T ss_dssp CSCBCTTTSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCS
T ss_pred CEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 50002000226899999998787469763763215666825887067630668999999999999999986397477764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 KP~~~~~Gsg~H~h~Sl~~~~~n~~~~~~~~~~lS~~~~~~iaGlL~h~~~l~al~~P~vNSY~Rl~~~~~ap~~~~Wg~ 240 (374)
T d2bvca2 161 KPLFGDNGSGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQ 240 (374)
T ss_dssp CSSTTSCCCCEEEEEEEEETTEECSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHSCSTTHHHHSSTTSSSCSBCCEEE
T ss_pred EECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEECC
T ss_conf 31567887660079974158988655566655567999999999985209888987378742653489875644774046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~nR~~~iRi~~~~~~~~~~riE~R~~da~aNPYL~lAailaagl~Gi~~~l~p~~p~~~~~~~~~~~~~~~~~~LP~sl~ 320 (374)
T d2bvca2 241 RNRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDLYELPPEEAASIPQTPTQLS 320 (374)
T ss_dssp TCTTSSEEECCCCSCTTSCCEEECSCCSSSCHHHHHHHHHHHHHHHHHTTCCCCCCCCSCGGGCCHHHHHTSCBCCSSHH
T ss_pred CCCCCCEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHH
T ss_conf 76655311024468975626885278833107899999999866656412344687778513299657658132501799
Q ss_pred -----------------------------------------------------E
Q ss_conf -----------------------------------------------------8
Q 001511 467 -----------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------~ 467 (1064)
-
T Consensus 321 eAl~~l~~d~~~~~~~~~~g~~~i~~y~~~Kr~~E~~~~~~~vt~wE~~~Y~~~ 374 (374)
T d2bvca2 321 DVIDRLEADHEYLTEGGVFTNDLIETWISFKRENEIEPVNIRPHPYEFALYYDV 374 (374)
T ss_dssp HHHHHHHHCCHHHHGGGSSCHHHHHHHHHHHHHHTHHHHHTSCCHHHHHHHTTC
T ss_pred HHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC
T ss_conf 999999759787876563789999999999999999999689999999604899
|
| >d1kfwa1 c.1.8.5 (A:10-327,A:389-444) Psychrophilic chitinase B {Arthrobacter sp., tad20 [TaxId: 1667]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Psychrophilic chitinase B species: Arthrobacter sp., tad20 [TaxId: 1667]
Probab=100.00 E-value=0 Score=28168.54 Aligned_cols=1 Identities=0% Similarity=-0.959 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~g~rvvgYy~~W~~y~r~~~~~~l~~~i~~~~lTHi~YAFa~i~~~~~~~~~~~~~~~~~~~g~~~~~d~~~d~ 80 (374)
T d1kfwa1 1 PLTSTVNGYRNVGYFAQWGVYGRAFQAKQLDVSGTAKNLTHINYSFGNINNQTLTCFMANKAQGTGPNGSDGAGDAWADF 80 (374)
T ss_dssp CCBSSBTTBEEEEEEEGGGGSTTCCCHHHHHHTSCGGGCSEEEEEEECBCTTTCSBCCCEECCCSSTTTTTTCEEHHHHH
T ss_pred CCCCCCCCCEEEEEECCCEECCCCCCHHHCCCCCCHHHCCEEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 98888888789999895400588898634767798524987999123014875532024311134778752347606541
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lK~~~p~lKvllSiGGw~~s~~F~~~a~~~~~R~~Fi~s~v~~~~~~~l~ 160 (374)
T d1kfwa1 81 GMGYAADKSVSGKADTWDQPLAGSFNQLKQLKAKNPKLKVMISLGGWTWSKNFSKAAATEASRQKLVSSCIDLYIKGNLP 160 (374)
T ss_dssp TCCCCTTTSSSSSCCCTTCSCCHHHHHHHHHHTTCTTCEEEEEEECSSSCTTHHHHTSSHHHHHHHHHHHHHHHTSCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 33334444456655653321013689999998618997599998189877763111047889999999999999981975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~FDGiDiDWEyP~~~~~~~~~~~~~~~D~~nf~~Ll~eLR~~ld~~~~~~~k~~~Ls~A~~~~~~~~ 240 (374)
T d1kfwa1 161 NFEGRGGAGAAAGIFDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYGSTNNKKYVLSAFLPANPADI 240 (374)
T ss_dssp EETTEEETTTTTTTCCEEEEECSCTTSSCSSTTCCCCTTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECSSHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC
T ss_conf 21111232233244663011226514446777777887648999999999999999987563575389999852540011
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~d~~~i~~~vD~invMtYD~~G~w~~~~tg~~apLy~~~~~~~~~~~~~svd~aV~~~~~~Gvp~~KlvlGipyd~ 320 (374)
T d1kfwa1 241 DAGGWDDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPADPRAPSKKFSADKAVKKYLAAGIDPKQLGLGLAADN 320 (374)
T ss_dssp HHHTTTCGGGGGTCSEEEECCSCSSCTTSTTBCCCSSCSSCCTTCCSCGGGCCCHHHHHHHHHHTTCCGGGEEEEEESCC
T ss_pred CCCCCCHHHHHCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCHHHEEEEECCCC
T ss_conf 23473266452004799997144046789987776675779977877777770699999999987999899389846799
Q ss_pred -----------------------------------------------------E
Q ss_conf -----------------------------------------------------8
Q 001511 467 -----------------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~si~~K~~y~~~~glgG~m~W~~~~D~~g~Ll~a~~~~l~~~~~~~~~~~~p~ 374 (374)
T d1kfwa1 321 IATTKQKTDYIVSKGLGGGMWWELSGDRNGELVGAMSDKFRAAAPGPVTEAAPP 374 (374)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECGGGCTTCHHHHHHHHHHHHSSCCSCCCBCCC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 999999999998569953999975579997499999998458899987788998
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=100.00 E-value=0 Score=28102.99 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREKQQFP 80 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGGGEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCEEEECCCEEEECCCHHHHHHHHHHCCCCCCCCC
T ss_conf 99899989688999999999868998999958998858668954299899538658727887999999983885212332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (373)
T d1seza1 81 LSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEPILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPF 160 (373)
T ss_dssp SSCCCEEEESSSSEEECCSSHHHHHHSSSSCHHHHHHHHTHHHHC----------CCCBHHHHHHHHHCHHHHHTTHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCHHCCCCHH
T ss_conf 11233212244333221122134442122211355566788887642000000111000000012223432001011012
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~ 240 (373)
T d1seza1 161 VAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKD 240 (373)
T ss_dssp HHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC----------CCCSCCSTTCSCBEETTCTHHHHHHHHTT
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 21010233110025567899987641001445567876404322222101234333203540453034612799999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 l~~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~ 320 (373)
T d1seza1 241 LREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGH 320 (373)
T ss_dssp SCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCT
T ss_pred HCCCEEECCCEEEEEEEECCCCCCCCCCEEEECCCCCCCCEEEECCEEEECCCHHHHHHCCCCCCCCCCCHHHHCCCCCC
T ss_conf 50655764987899999678542113552786124789746998899999986577653365557775332330100245
Q ss_pred ----------------------------------------------------E
Q ss_conf ----------------------------------------------------8
Q 001511 467 ----------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~~~~~~~t~~pglf~aGd~~~g~~~~~A~~~G~~aA~~i~~~L~~~~ 373 (373)
T d1seza1 321 NYDSVLDAIDKMEKNLPGLFYAGNHRGGLSVGKALSSGCNAADLVISYLESVS 373 (373)
T ss_dssp THHHHHHHHHHHHHHSTTEEECCSSSSCSSHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 78867626423478999999972578765399999999999999999875289
|
| >d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=28101.62 Aligned_cols=1 Identities=0% Similarity=-1.656 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~MkkI~~v~GtR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~~~~~~~~~~~i~~d~~l~~~~~~~s~~~~~~~~~~~~ 80 (373)
T d1v4va_ 1 GMKRVVLAFGTRPEATKMAPVYLALRGIPGLKPLVLLTGQHREQLRQALSLFGIQEDRNLDVMQERQALPDLAARILPQA 80 (373)
T ss_dssp CCEEEEEEECSHHHHHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99769999873697999999999997189998899992688255637122408886656787888887789999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~l~~~kPD~vlv~GDr~e~la~a~aa~~~~ipi~HiegG~rsg~~~~~~~de~~R~~iskls~~hf~~t~~~~~~L~~ 160 (373)
T d1v4va_ 81 ARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLDFAPTPLAKANLLK 160 (373)
T ss_dssp HHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEEEETCCCCCSCTTSSTTHHHHHHHHHHHCSEEEESSHHHHHHHHT
T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHH
T ss_conf 66664037640011136753103778898762122241343455433567616666655223443255122156666666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~Ge~~~~I~~vG~p~~D~i~~~~~~~~~~~~~~~~~~~lvt~hr~~n~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~ 240 (373)
T d1v4va_ 161 EGKREEGILVTGQTGVDAVLLAAKLGRLPEGLPEGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNPVV 240 (373)
T ss_dssp TTCCGGGEEECCCHHHHHHHHHHHHCCCCTTCCSSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSCHHH
T ss_pred HCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 30454213442662155777654311000223445531688426555312789999999986533565035640342221
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~n~~~~~~l~~~~~l~ll~~s~~vignSssgi~Ea~~lg~P~Inir~~~eRqeg~~~g~nvlv~~d~~~ 320 (373)
T d1v4va_ 241 REAVFPVLKGVRNFVLLDPLEYGSMAALMRASLLLVTDSGGLQEEGAALGVPVVVLRNVTERPEGLKAGILKLAGTDPEG 320 (373)
T ss_dssp HHHHHHHHTTCTTEEEECCCCHHHHHHHHHTEEEEEESCHHHHHHHHHTTCCEEECSSSCSCHHHHHHTSEEECCSCHHH
T ss_pred HHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCEEEECCCCHHHHCCHHHCCCEEEECCCCCCHHHHHCCEEEECCCCHHH
T ss_conf 03555543033320011100078888876430168506412222003205868984887669878962904975899999
Q ss_pred ----------------------------------------------------E
Q ss_conf ----------------------------------------------------8
Q 001511 467 ----------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------~ 467 (1064)
-
T Consensus 321 I~~~i~~~l~~~~~~~~~~~~~npYGdG~as~rI~~~L~~~~~~~~~~~~~~~ 373 (373)
T d1v4va_ 321 VYRVVKGLLENPEELSRMRKAKNPYGDGKAGLMVARGVAWRLGLGPRPEDWLP 373 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHSCCSSCCSCHHHHHHHHHHHHTTSSCCCCCCCC
T ss_pred HHHHHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999999719898864024889898987999999999998489989878899
|
| >d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Plasmepsin (a hemoglobin-degrading enzyme) species: Plasmodium vivax [TaxId: 5855]
Probab=100.00 E-value=0 Score=28100.25 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~Y~~~I~iGtP~Q~~~v~~D 80 (373)
T d1miqa_ 1 HLTLAFKIERPYDKVLKTISKKNLKNYIKETFNFFKSGYMKQNYLGSENDVIELDDVANIMFYGEGEVGDNHQKFMLIFD 80 (373)
T ss_dssp CEEEEEEEECHHHHHHHHSCHHHHHHHHHHHHHHHTTSCTTCCCCCBTTBCCCGGGTBCEEEECCCEETTTTEECCEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEEEE
T ss_conf 92233303582467787766666889887644331134232122256787687255169789999998799989999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 TGSs~lWv~~~~C~~~~c~~~~~y~~~~SsT~~~~~~~~~~~y~~G~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~ 160 (373)
T d1miqa_ 81 TGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMPYKFIEVTDTDDLEPI 160 (373)
T ss_dssp TTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEECGGGTTH
T ss_pred CCCHHEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCEEEEEEEEEEEEECCCCEEEEEEEEEECCCCCCC
T ss_conf 99625189879999743468982389889853388963899928817999999788897674267668999840356753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~g~l~~Gg~d~~~~~g~~~~~pv~~~~~w~ 240 (373)
T d1miqa_ 161 YSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQ 240 (373)
T ss_dssp HHHSCCCEEEECSSCCTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEEBSSSSSSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHCCCCCEEEEEECCCCCCCCEEECCCCCCHHCCCEEEEEECCCCCEEE
T ss_conf 23566563566444433578854301124443225653278871367888715642677830114424687114552489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 i~l~~~~~~~~~~~~~~iiDTGTs~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~P~itf~f~g~~~~l~p~~y~ 320 (373)
T d1miqa_ 241 IDLDVHFGKQTMEKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYM 320 (373)
T ss_dssp EEEEEEETTEEEEEEEEEECTTBSSEEECHHHHHHHHHHHTCEECTTSSCEEEETTCTTCCCEEEECSSCEEEECGGGSE
T ss_pred EEEEEEECCEECCCCCEEECCCCCEECCCHHHHHHHHHHHCCEECCCCCEEEECCCCCCCCEEEEEECCEEEEECHHHEE
T ss_conf 99998778675487416862677213157899999999839755068970675344688863999999999998889906
Q ss_pred ----------------------------------------------------E
Q ss_conf ----------------------------------------------------8
Q 001511 467 ----------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~rIGfA~ak~ 373 (373)
T d1miqa_ 321 NPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIAKN 373 (373)
T ss_dssp EESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEEECC
T ss_pred EEEEECCCCEEEEEEEECCCCCCCEEECHHHHCCEEEEEECCCCEEEEEECCC
T ss_conf 88996799899999998888999899717943769999999999999998079
|
| >d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Dextranase, catalytic domain domain: Dextranase, catalytic domain species: Penicillium minioluteum [TaxId: 28574]
Probab=100.00 E-value=0 Score=28100.13 Aligned_cols=1 Identities=100% Similarity=1.367 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~ga~p~~~~d~t~a~~~a~~~~~~~~~~~vvy~PpG~y~~g~~~~~~~~~~~~~g~~l~~~~~~~y~~~G~~~~~~i~ 80 (373)
T d1ogmx2 1 LPSGMIPHMTPDNTQTMTPGPINNGDWGAKSILYFPPGVYWMNQDQSGNSGKLGSNHIRLNSNTYWVYLAPGAYVKGAIE 80 (373)
T ss_dssp CCGGGSCCCCTTTEEECCSEEECTTTTCSSSEEEECSEEEEECBCTTCCBSCSSSCCEECCTTCCEEEECTTEEEESCEE
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCEEEECCEEECCCEEEECCCEEECCCCEEEECCCCCEEEEEEE
T ss_conf 98886589898846875310465244689888998994638387430474588738669636743776079857986798
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~n~~i~giti~~s~~~~~~~~~~~~v~i~ 160 (373)
T d1ogmx2 81 YFTKQNFYATGHGILSGENYVYQANAGDNYIAVKSDSTSLRMWWHNNLGGGQTWYCVGPTINAPPFNTMDFNGNSGISSQ 160 (373)
T ss_dssp ECCSSCEEEESSCEEECTTSCTTCBTTTTTBSCCCTTTBCCSEEESCCCSSEEEEEESCEEECCSSCCEEECSSSCEEEE
T ss_pred ECCCCEEEEECCEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECEEEECCCEEEEEECCCCEEEEE
T ss_conf 63765089971207838866632566543223346776567755899984227999677997899169987268759999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~i~~~~~~~~n~dgi~~~~~~~i~~~~~~~gDD~i~~~s~~i~v~n~~~~~~~~~~~~~~g~~g~~i~nv~v~ni~v~ 240 (373)
T d1ogmx2 161 ISDYKQVGAFFFQTDGPEIYPNSVVHDVFWHVNDDAIKIYYSGASVSRATIWKCHNDPIIQMGWTSRDISGVTIDTLNVI 240 (373)
T ss_dssp EEEEEEECCCSTTCCCCBCCTTCEEEEEEEEESSCSEECCSTTCEEEEEEEEECSSSCSEECCSSCCCEEEEEEEEEEEE
T ss_pred EEEEEECCCCCCCCEEEECCCCEEEEEEEEECCCCEEEECCCCEEEEEEEEECCCCEEEEEECCCCCCCCEEEEEEEEEE
T ss_conf 78999668877787005324878999528963887799657988999799978875247883667887631599915998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ni~f~nI~~~~~~~~~i~~~~~~~~~~~~i~nV~i~nI~~~~~~~~ 320 (373)
T d1ogmx2 241 HTRYIKSETVVPSAIIGASPFYASGMSPDSRKSISMTVSNVVCEGLCPSLFRITPLQNYKNFVVKNVAFPDGLQTNSIGT 320 (373)
T ss_dssp ECCCSSCCTTTTCEEEEECCCSSSSCCCEEEEEEEEEEEEEEECSSBCEEEEECCSEEEEEEEEEEEEETTCBCCSTTCT
T ss_pred CCEECCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEEEEECCCC
T ss_conf 85611220033434443322112100689869992899919998753676999876788888332189984499804571
Q ss_pred ----------------------------------------------------E
Q ss_conf ----------------------------------------------------8
Q 001511 467 ----------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~~~~~~~~~~~~~~Ni~i~~~~i~~~n~~~~~~~~~~~~g~~~~~~~~~ 373 (373)
T d1ogmx2 321 GESIIPAASGLTMGLAISAWTIGGQKVTMENFQANSLGQFNIDGSYWGEWQIS 373 (373)
T ss_dssp TCEEECCCTTCCEEEEEEEEEETTEECCTTTCSTTSSSCEEECGGGTTTCEEC
T ss_pred EEEEEECCCCCCCCEEEECEEEECEEEECCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 66875014687388578676991969864777777321678777504531229
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=100.00 E-value=0 Score=28100.77 Aligned_cols=1 Identities=0% Similarity=-0.825 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~a~~~~~~~~~a~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l 80 (373)
T d2madh_ 1 SSASAAAAAAAAALAAGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEF 80 (373)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEECCCCCEE
T ss_conf 90565434310132145678986563018999789997342257876599998999979999957988607986899989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 160 (373)
T d2madh_ 81 ALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD 160 (373)
T ss_pred EEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEE
T ss_conf 99960577532124531899997778938889726885136851689708998589937999986987467762368728
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 240 (373)
T d2madh_ 161 DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQAD 240 (373)
T ss_pred EEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEECCCCEEEEEE
T ss_conf 99824520699962899199999479939999747742667886300366753043458878994299925896599997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~ 320 (373)
T d2madh_ 241 ISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDV 320 (373)
T ss_pred CCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCE
T ss_conf 68990789776305647578664136741335771499759995488824786258986999989999698986689982
Q ss_pred ----------------------------------------------------E
Q ss_conf ----------------------------------------------------8
Q 001511 467 ----------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~~ 373 (373)
T d2madh_ 321 DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNEA 373 (373)
T ss_pred EEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEECCC
T ss_conf 58999989998999996799929999999998999988889898189984689
|
| >d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Amide receptor/negative regulator of the amidase operon (AmiC) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=0 Score=28098.93 Aligned_cols=1 Identities=0% Similarity=-1.192 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~pvIG~~~p~tG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr~i~l~~~D~~~~~~~a~~~a~~Li~~~~V~aiiG~~~S~ 80 (373)
T d1qo0a_ 1 RPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSH 80 (373)
T ss_dssp CCEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCCEEEEECCTTCHHHHHHHHHHHHHHSCCCEEEECCSHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHHH
T ss_conf 98899972886842655299999999999998850996886889999769999999999999999608966998041333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~av~~~~~~~~vp~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~vaii~~d~~~g~~~~~~~~~~~~~ 160 (373)
T d1qo0a_ 81 TRKAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQ 160 (373)
T ss_dssp HHHHHHHHHHHHTCEEEECSCCCCCCCCTTEEECSCCGGGTHHHHHHHHHHHSCSEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf 24456899997199678223354345687336604671787777888987515742553467764037888653111220
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~G~~vv~~~~~~~~~~~~d~~~~~~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (373)
T d1qo0a_ 161 HGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEVAKMESDV 240 (373)
T ss_dssp TTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCSTTHHHHHHHHHHHHCSSCCCCEEESSCCHHHHTTSCHHH
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 36733678971676442046799999875188732320235047779999998457656640125545248776444443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~aY~a~~~~a~Ai~~ag~~d~~~i~~aL~~~~~~~~~G~ 320 (373)
T d1qo0a_ 241 AEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGNWRVEDVQRHLYDIDIDAPQGP 320 (373)
T ss_dssp HTTCEEEESCCTTCCSHHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHSSCCEEETTEE
T ss_pred HCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEECCCEE
T ss_conf 05720102442000027789999999987398788770799999999999999998689999999999855953078365
Q ss_pred ----------------------------------------------------E
Q ss_conf ----------------------------------------------------8
Q 001511 467 ----------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------~ 467 (1064)
-
T Consensus 321 i~f~~~~~~~~~~~~i~q~~~dg~~~vv~~~~~~v~p~p~~~~~~~~~w~~~~ 373 (373)
T d1qo0a_ 321 VRVERQNNHSRLSSRIAEIDARGVFQVRWQSPEPIRPDPYVVVHNLDDWSASM 373 (373)
T ss_dssp EEECTTTSBEEBCCEEEEECTTSCEEEEEECSSCBCCCTTCCSCCGGGGGGGC
T ss_pred EEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99838998346866999993699589996069836799974888865455569
|
| >d1m0wa2 d.142.1.6 (A:6-210,A:324-491) Eukaryotic glutathione synthetase ATP-binding domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Eukaryotic glutathione synthetase ATP-binding domain domain: Eukaryotic glutathione synthetase ATP-binding domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=28096.77 Aligned_cols=1 Identities=0% Similarity=-1.457 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~s~~~~~~l~~~~~dwa~~hGl~~~~~~~~~~~~~~~~aP~tL~Pspfpr~~F~~a~~vq~~~n~L~~~vS~D~~~~~~f 80 (373)
T d1m0wa2 1 PSKDQLNELIQEVNQWAITNGLSMYPPKFEENPSNASVSPVTIYPTPIPRKCFDEAVQIQPVFNELYARITQDMAQPDSY 80 (373)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEECCTTGGGCTTEEEECCEESSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 98799999999999999971947436877789886145787952776888999999999999999999997240426899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 L~~~l~~~~~~D~~Ft~~L~~i~~~v~~~g~~~~q~i~Lgl~RSDYMld~~~~~~~~KQVE~NTIa~sfg~ls~~v~~lH 160 (373)
T d1m0wa2 81 LHKTTEALALSDSEFTGKLWSLYLATLKSAQYKKQNFRLGIFRSDYLIDKKKGTEQIKQVEFNTVSVSFAGLSEKVDRLH 160 (373)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHHTSCCSSCCCCCEEEEEEEEEEEEEETTEEEEEEEEEECSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCCCCCCCHHHHEEEEEEEHHHHHHHHHHHHHH
T ss_conf 99998767405889999999999999854446243258744301321477666523441230020020121888999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~l~~~~~~d~~~~~~~d~~~~~~~~~~~le~~~a~~~~~~l~g~KKvQq~La~pgvLe~Fl~d~~~~~~lr~tF~~ly~ 240 (373)
T d1m0wa2 161 SYLNRANKYDPKGPIYNDQNMVISDSGYLLSKALAKAVESYKSQQKKIQQLLTDEGVLGKYISDAEKKSSLLKTFVKIYP 240 (373)
T ss_dssp HHHHHTTSSCTTSCSSCGGGBCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHTTSHHHHTTTCCCHHHHHHHHTTCCCEEE
T ss_pred HHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 99985557788775016886545155189886666466776467652672103668898867988999999998504786
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 Ld~~~~g~~~~~~Al~~p~~~VLKPQrEGGGnniyg~dI~~~L~~l~~~e~~ayILMerI~Pp~~~~~~~~r~~~~~~~~ 320 (373)
T d1m0wa2 241 LDDTKLGREGKRLALSEPSKYVLKPQREGGGNNVYKENIPNFLKGIEERHWDAYILMELIEPELNENNIILRDNKSYNEP 320 (373)
T ss_dssp CSSSHHHHHHHHHHHHCGGGEEEEESSCSSCCCEEGGGHHHHHHTSCGGGGGGEEEEECCCCCCBCSCCEEETTEEECCC
T ss_pred CCCCHHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEECCCEEEECC
T ss_conf 78502128999998619153897455557665401479999987478444113307854179988875997299011277
Q ss_pred ----------------------------------------------------E
Q ss_conf ----------------------------------------------------8
Q 001511 467 ----------------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~vSELGifG~~l~~~~~v~~N~~~G~LlRTK~~~~nEGGVaaG~g~lDS~~L~ 373 (373)
T d1m0wa2 321 IISELGIYGCVLFNDEQVLSNEFSGSLLRSKFNTSNEGGVAAGFGCLDSIILY 373 (373)
T ss_dssp BEEEEEEEEEEEECSSCEEEEEEEEEEEEEECCEEETTEEEECCEEECCEEEC
T ss_pred EEECCCCCEEEEECCCEEEEECCEEEEEECCCCCCCCCCEECCEEECCCHHCC
T ss_conf 32033041899978977997165028896279988876810354223422009
|
| >d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: tRNA-guanine transglycosylase family: tRNA-guanine transglycosylase domain: Queosine tRNA-guanine transglycosylase species: Zymomonas mobilis [TaxId: 542]
Probab=100.00 E-value=0 Score=28027.99 Aligned_cols=1 Identities=0% Similarity=-1.823 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~Fei~~~d~~AR~G~L~~~~g~i~TP~fmpv~t~g~v~~ltpd~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gglh 80 (372)
T d1r5ya_ 1 RPRFSFSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRPGAERIAKLGGLH 80 (372)
T ss_dssp CCSCEEEEEEEETTEEEEEEEETTEEEEESEEECBCTTSSCTTCCHHHHHHTTCSCEEEEHHHHHHTTCHHHHHHTTCHH
T ss_pred CCCEEEEEEECCCCEEEEEEEECCEEEECCEEEECCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHCCCCHHHHHCCCHH
T ss_conf 99607999965585004899979977679978754778808847999999728988833188887587617877426513
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~f~~~~~~iltdsGg~q~~sl~~~~~~~~~gv~f~s~~~g~~~~ltpe~~i~~q~~ig~DI~~~Ldd~~~~~~~~~~~~~ 160 (372)
T d1r5ya_ 81 SFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSHLDGSRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAAS 160 (372)
T ss_dssp HHHTCCSCEEEECSHHHHC-CC-CCEEETTEEEC---------CBCHHHHHHHHHHHTCSEEECCCCCCCSSCCHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 34204565200247654323223455577885353226872111000779999985088467522446653101678899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~rt~~w~~~~~~~~~~~~~~~~~~~lfgivqGg~~~dlR~~s~~~l~~~~~~G~aiGgl~~~~~~~~~~~~v~~~~~~ 240 (372)
T d1r5ya_ 161 SMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVPM 240 (372)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHCEEEEEECCTTCHHHHHHHHHHHHHHCCSEEEECSCSSSSCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 99999999999999875055667666321131541265688889999986213732122445675067788899850200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 Lp~~kPr~l~Gvg~P~~il~~V~~GvD~FD~~~p~r~Ar~G~alt~~g~~~l~~~~~~~d~~Pl~~~C~C~~C~~~sraY 320 (372)
T d1r5ya_ 241 LPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAY 320 (372)
T ss_dssp SCTTSCEEETTCCSHHHHHHHHTTTCCEEECSHHHHHHHTTEECCTTCCEETTSGGGTTCCSCSSSSCCSHHHHHCCHHH
T ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCEEECCCCEEECCCCCCCCCCCCCCCCCCHHHCCCCHHH
T ss_conf 12011022047898789888360589954543113111136157259832321232335689869898992325159999
Q ss_pred ---------------------------------------------------E
Q ss_conf ---------------------------------------------------8
Q 001511 467 ---------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------~ 467 (1064)
-
T Consensus 321 l~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~f~~~y~ 372 (372)
T d1r5ya_ 321 IHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFAQDFRARYF 372 (372)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 9877638836899999999999999999999999985999999999999649
|
| >d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of family B DNA polymerases species: Bacteriophage T4 [TaxId: 10665]
Probab=100.00 E-value=0 Score=28026.97 Aligned_cols=1 Identities=0% Similarity=-0.925 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~fytnv~~~gn~il~rg~~~~G~r~~~~~~f~Py~y~~~~~~~~~ksl~G~~v~~v~f~s~~~~r~~~~~~~~~~~~~~ 80 (372)
T d1noya_ 1 DEFYISIETVGNNIVERYIDENGKERTREVEYLPTMFRHCKEESKYKDIYGKNCAPQKFPSMKDARDWMKRMEDIGLEAL 80 (372)
T ss_dssp CCEEEEEEEETTEEEEEEECTTSCEEEEEEECCCSEECGGGGTCSSCTTTTCCCCCEECSSHHHHHHHHHHHHHHCTTCT
T ss_pred CCCCEEEEEECCEEEEEEEECCCEEEEEEECCEEEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEE
T ss_conf 98661369999999999996599799999656058999858997858359908877857999999999997256663464
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~die~~~~~~~~~~~~~~~i~~I~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 160 (372)
T d1noya_ 81 GMNDFKLAYISDTYGSEIVYDRKFVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRFYVFDLLNSMYGSVSKWDA 160 (372)
T ss_dssp HHHHHHHHHHHHHTCSCCCCCGGGCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCSSCCCCCCCH
T ss_pred ECCCCCEEEHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHEEECCCCEEEEEEECCCCCCCCCCCCC
T ss_conf 02343413312316545556623225773022002346688631010000222144159879999962656566556555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~E~~lL~~F~~~~~~~dPDii~G~N~~~FD~pYL~~R~~~~~~~~~~~~~~~ 240 (372)
T d1noya_ 161 KLAAKLDCEGGDEVPQEILDRVIYMPFDNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSP 240 (372)
T ss_dssp HHHHSCGGGTCCCCCHHHHTTEEEEEESCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 55433222346665545668759998099999999999999872888799970678616799999987456310111221
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~sy~L~~v~~~~l~~~K~~~~~~l~~~~~~d~~~l~~Yn 320 (372)
T d1noya_ 241 IGRVKSKLLQNMYGSKEIYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRETNHQRYISYN 320 (372)
T ss_dssp TSCEEEEECCGGGCSCEEEEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCCCSSCGGGHHHHHHHHHHHHH
T ss_pred CCCCCCEEEECCCCCCEEEEECCCEEEEEEHHHEECCCCCCHHHHHHHHEEECCCCCCCCCCHHHHHHHHHCHHHHHEEC
T ss_conf 26521001101356522564033148975101200002330024344310001146777742249999874925702201
Q ss_pred ---------------------------------------------------E
Q ss_conf ---------------------------------------------------8
Q 001511 467 ---------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------~ 467 (1064)
+
T Consensus 321 i~D~~L~~~L~~kl~~i~~~~~la~~~gvp~~~v~~~~~~~~~~~~~~l~~~ 372 (372)
T d1noya_ 321 IIDVESVQAIDKIRGFIDLVLSMSYYAKMPFSGVMSPIKTWDAIIFNSLKGE 372 (372)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHTCCGGGGGCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 9988999999998757999999999989398993749999999999986259
|
| >d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Arginase/deacetylase superfamily: Arginase/deacetylase family: Histone deacetylase, HDAC domain: HDAC homologue species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=0 Score=28026.22 Aligned_cols=1 Identities=0% Similarity=-0.825 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~k~~li~~~d~~~~~~g~~HPe~p~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~~ 80 (372)
T d1c3pa_ 1 KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCVPKG 80 (372)
T ss_dssp CCEEEEECGGGGGSCCCTTCGGGSCCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSCCTT
T ss_pred CEEEEEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCC
T ss_conf 90899968201587897843959799999999999769987880771898999999871899999999974544467522
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~p~~~~~~~~a~~~~g~~~~a~~~~~~g~~a~~ppGG~HHA~~~~a~GFC~fNnvAiaa~~l~~~~~~R 160 (372)
T d1c3pa_ 81 AREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKR 160 (372)
T ss_dssp HHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTCEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCC
T ss_conf 31014688767878889999998753358897653224542241246534421024313640460999999998744674
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 V~ivD~DvHhGnGtq~if~~d~~V~~~SiH~~~~~~~p~~tG~~~e~G~~~g~g~~~NiPL~~g~~D~~y~~~~~~~l~p 240 (372)
T d1c3pa_ 161 ILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEI 240 (372)
T ss_dssp EEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 47874345677762577761477543000257777788888772236787665412414488655628999999986799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~f~Pd~IvvsaG~D~~~~Dplg~l~lt~~~~~~~~~~~~~~~~~~~~vleGGY~~~~~a~~~~~~~~~l~g~~~~~~ 320 (372)
T d1c3pa_ 241 VKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGREVPEK 320 (372)
T ss_dssp HHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHHCSCEEECCCCCCHHHHHHHHHHHHHHHHTCCCCSS
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99866976899978816677686568868888999999999985899699975878588999999999999829999845
Q ss_pred ---------------------------------------------------E
Q ss_conf ---------------------------------------------------8
Q 001511 467 ---------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 372 (372)
T d1c3pa_ 321 LNNKAKELLKSIDFEEFDDEVDRSYMLETLKDPWRGGEVRKEVKDTLEKAKA 372 (372)
T ss_dssp CCHHHHHHHHHSCCCCSSTTCCCGGGGGCSSCCCCCCCCCHHHHHHHHHHHC
T ss_pred CCHHHHHHHCCCCHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 6877887631588777424467033200247855535778899999998509
|
| >d1qlpa_ e.1.1.1 (A:) Antitrypsin, alpha-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Antitrypsin, alpha-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28026.11 Aligned_cols=1 Identities=100% Similarity=1.732 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
|
T Consensus 1 ~~~~~~~~~~Fa~~l~~~l~~~~~~~N~v~SP~si~~~La~l~~Ga~g~T~~el~~~L~~~~~~~~~~~~~~~~~~~~~~ 80 (372)
T d1qlpa_ 1 FNKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQIHEGFQELLRT 80 (372)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHCSSSCEEECHHHHHHHHHHHHTTCCHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 93220769999999999986129798299878999999999998546799999999709998778689999999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~l~~~n~i~~~~~~~l~~~f~~~~~~~f~~~~~~~df~~~~~~~~~iN~wv~~~T~g~i~~~~~~~~~~t~l 160 (372)
T d1qlpa_ 81 LNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVF 160 (372)
T ss_dssp HSCSSCCCCEEEEEEEEEETTCCBCHHHHHHHHHTSCCEEEEECTTSHHHHHHHHHHHHHHHTTTSSCSCCCCCCTTCCE
T ss_pred HHCCCCCHHHHHHEEEEECCCCCCCHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 53247614451010023316776478999999987275241455444699999999999998579875545678974155
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~lina~~f~~~W~~~F~~~~t~~~~F~~~~~~~~~V~mm~~~~~f~~~~~~~l~~~~~~lp~~~~~~~~il~~~~~~l~~ 240 (372)
T d1qlpa_ 161 ALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFLPDEGKLQH 240 (372)
T ss_dssp EEEEEEEECCCBSSCCCGGGCEEEEEESSSSCEEEEEEEEEEEEEEEEEETTTTEEEEEEEETTTEEEEEEEECTTCHHH
T ss_pred HHHHHHEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCEEEEECCCCCCCEEEEEECCCCCHHH
T ss_conf 54323213043113566210445654036885489750000153111014667869995256777259999778679899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 l~~~L~~~~l~~~~~~~~~~~v~v~lPkF~i~~~~dl~~~L~~lGl~~~F~~~ad~~~i~~~~~l~vs~v~q~~~i~v~E 320 (372)
T d1qlpa_ 241 LENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGVTEEAPLKLSKAVHKAVLTIDE 320 (372)
T ss_dssp HHHHCCHHHHHHHHHCCCCEEEEEEEECEEEEEEEEHHHHTGGGTCCGGGSTTCCCTTTBSSSCCCCCEEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEECCHHHHHHHCCCHHHHCCHHHHCCCCCCCCCEEEEEEEEEEEEECC
T ss_conf 98764599999998735644789998789985211577877755946554225453176788981566378899999878
Q ss_pred ---------------------------------------------------E
Q ss_conf ---------------------------------------------------8
Q 001511 467 ---------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~Gteaaa~t~~~~~~~s~~~~f~~drPFlf~I~~~~t~~iLf~G~v~~Pt~~ 372 (372)
T d1qlpa_ 321 KGTEAAGAMFLEAIPMSIPPEVKFNKPFVFLMIEQNTKSPLFMGKVVNPTQK 372 (372)
T ss_dssp CSSSSCCCCCCCCCCSSCCCEEECCSCEEEEEEETTTCCEEEEEEESCTTCC
T ss_pred CCCCHHHHHEEECCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 8400323210102357899759926998999999899939999992799899
|
| >d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Germin/Seed storage 7S protein domain: Oxalate decarboxylase OxdC (YvrK) species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=28025.19 Aligned_cols=1 Identities=0% Similarity=-1.324 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~g~~~~gp~~~~~~~~~~d~~~~~~td~g~~~~~~~~f~~~~~~~~~gg~~r~~~~~~lp~~~~~a~~~~~L~ 80 (372)
T d1j58a_ 1 PQPIRGDKGATVKIPRNIERDRQNPDMLVPPETDHGTVSNMKFSFSDTHNRLEKGGYAREVTVRELPISENLASVNMRLK 80 (372)
T ss_dssp CCSEETTEECCCCSCCCHHHHHHCHHHHSCCTTCBSCCCCCEECGGGSCCEEETTEEEEEECTTTCTTCSSCEEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEHHHCHHHHHHHHEEEEEC
T ss_conf 98604899998889877666531864458997766755105642133544236797147864443800331100589988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 pga~~~pH~H~~ae~~yVl~G~~~vt~Vd~~G~~~~~~l~~GDv~~~P~G~~H~i~n~~dg~e~l~vf~~~~~~~~~~f~ 160 (372)
T d1j58a_ 81 PGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVFDDGSFSENSTFQ 160 (372)
T ss_dssp TTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEEEEEEEEEEEEESCTTCCGGGEEE
T ss_pred CCCCCCCCCCCCCCEEEEEECEEEEEEEECCCCEEEEEECCCCEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEE
T ss_conf 99676873637643899995779999994899489988536988998999779997179995899997788866653043
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~p~evLa~af~v~~~~~~~i~~~e~~i~~~~~p~~~~~~~~~~~~g~~~~~~~~~l~~q~P~~~~gG~~~~~d 240 (372)
T d1j58a_ 161 LTDWLAHTPKEVIAANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEGPNGEVPYPFTYRLLEQEPIESEGGKVYIAD 240 (372)
T ss_dssp HHHHHHTSCHHHHHHHHTCCTGGGTTSCSSCCSEECCCCCCCHHHHCCCCTTCCCSSCSEEEGGGSCCEECSSEEEEEES
T ss_pred ECCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEC
T ss_conf 10121359878998761999899863431223312456887423454147788998763230224688415774679926
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~fp~~~~is~~~~~l~PG~~~~~H~Hp~a~E~~yvl~G~g~v~v~~~~g~~~t~~l~~GDv~~iP~g~~H~i~N~g~e 320 (372)
T d1j58a_ 241 STNFKVSKTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDE 320 (372)
T ss_dssp TTTSTTCCSCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEECTTCBEEEEECSSS
T ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEECEEEEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCC
T ss_conf 33477667506999998899645887799972999999790999998579806899825985899899974999987999
Q ss_pred ---------------------------------------------------E
Q ss_conf ---------------------------------------------------8
Q 001511 467 ---------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~l~~l~vf~s~~~~~i~~~~~l~~~P~~vv~~~~~~~~e~~~~l~~~k~~vv 372 (372)
T d1j58a_ 321 PLVFLEIFKDDHYADVSLNQWLAMLPETFVQAHLDLGKDFTDVLSKEKHPVV 372 (372)
T ss_dssp CEEEEEEESSSSCCCEEHHHHHHTSCHHHHHHHHTCCHHHHTTCCSSCCSBC
T ss_pred CEEEEEEECCCCCCEEEHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCCCCC
T ss_conf 8899999789996545687876549999999885969999998875687669
|
| >d1vkpa_ d.126.1.6 (A:) Agmatine iminohydrolase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Porphyromonas-type peptidylarginine deiminase domain: Agmatine iminohydrolase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=28024.03 Aligned_cols=1 Identities=0% Similarity=-0.693 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~tp~~~gfrmPaEwe~~~~~~l~wP~~~~~w~~~~~~~~~~~~~i~~~Ia~~e~V~vl~~~~~~~~~~~~~~~nV~~~~ 80 (372)
T d1vkpa_ 1 RESPAEHGYYMPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFAGVAKAISKFEPVTVCASPAQWENARKQLPEDIRVVE 80 (372)
T ss_dssp CCCGGGGTCBCCCTTSCEEEEEECCCCCTTTSTGGGHHHHHHHHHHHHHHHTTSCEEEEECTTTHHHHHHHSCTTSEEEE
T ss_pred CCCHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCEEEE
T ss_conf 97935549976898563615999868998621345556899999999997389849999797999999975746728999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~dD~W~RD~GPifv~~~~~~~~~~~~~~~~~vdf~FN~wG~k~~~~~~~~~~d~~~~~~ia~~~~~~~~~~~lvlEGG 160 (372)
T d1vkpa_ 81 MSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEGG 160 (372)
T ss_dssp CCCSSCCHHHHSCEEEECCC-------CCSEEEEEEECCTTTHHHHSSBSCCTTHHHHHHHHHHHHTCCEEEEEEECCGG
T ss_pred CCCCCHHHHCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCC
T ss_conf 15898788614877998088642334678557860201366655555421345677999987412168744567166389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~ie~dG~GtlltTe~clln~nRNP~~sk~~ie~~Lk~~lGv~~viwl~~g~~~~DdTdGHID~~arFi~~~til~~~~~d 240 (372)
T d1vkpa_ 161 SIHVDGEGTCLVTEECLLNKNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNMCCFARPGVVLLSWTDD 240 (372)
T ss_dssp GEEECSSSEEEEEHHHHTCTTTCTTSCHHHHHHHHHHHHCCCEEEEESCCCTTCTTTTCCGGGTEEEEETTEEEEEECCC
T ss_pred CEEECCCCCEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHEEEECCCCEEEEEECCC
T ss_conf 77989996299756782077889998999999999986297559997670027988765500058971799079873288
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~y~~~~~~~~~L~~~~d~~g~~~~ii~lp~p~~~~~~~~~~~~~~~~~~~~~~~~g~~l~aSY~Nfli~N~~VivP 320 (372)
T d1vkpa_ 241 ETDPQYERSVEALSVLSNSIDARGRKIQVIKLYIPEPLYMTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGGIIAP 320 (372)
T ss_dssp TTSTHHHHHHHHHHHHHTCBCTTSCBCEEEEEECCSCCBCCHHHHHTSCCCSSBCCCCTTCBCCCCTTCCEEETTEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEC
T ss_conf 76855899999999999887505884317983034540003200145334666554568988655347999999999995
Q ss_pred ---------------------------------------------------E
Q ss_conf ---------------------------------------------------8
Q 001511 467 ---------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~ygd~~~D~~A~~~l~~~fP~r~Vi~Id~~~~i~~~gG~iHCiT~q~Pa~~~ 372 (372)
T d1vkpa_ 321 QFGDPIRDKEAIRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQPAEPT 372 (372)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTSEEEEETTTHHHHTTTCCTGGGEEEEECCCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 7989430799999999988898799827889998579853575777779999
|
| >d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Polyketide synthase PKS18 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=28021.62 Aligned_cols=1 Identities=0% Similarity=0.503 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~p~~~a~I~g~g~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~ri~~~tGI~~R~~~~~~~~~~~~~~~~~~~~ 80 (372)
T d1teda_ 1 AQLPPAPPTTVAVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMAVDPLDAKFDVFRREPAT 80 (372)
T ss_dssp CCCCCCCCCCEEEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECSSCTTSTTHHHHTTCSSC
T ss_pred CCCCCCCCCCEEEEEEEEEECCCEEECHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHCCCC
T ss_conf 99897999844899988996799178399999999860678177899999998359863514516543461445414887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~r~~~~~e~~~~la~~Aa~~aL~~ag~~~~dId~lI~~t~t~~~~P~~a~~v~~~LGl~~~~~~~~~~~~gC~g~~~a 160 (372)
T d1teda_ 81 IRDRMHLFYEHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNA 160 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGEEEEEEEESSCCCSSCHHHHHHHHHTCCTTCEEEEEESCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
T ss_conf 88888877737999999999999997599988998899964689888668899876514687625766004674179999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 L~~A~~~l~sg~~~~~LVV~~E~~s~~~~~~d~~~~~~~~~lfGDGAaA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (372)
T d1teda_ 161 LGTATNYVRAHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTE 240 (372)
T ss_dssp HHHHHHHHHHSTTCEEEEEEEEECGGGCCCCSSHHHHHHHHHBCEEEEEEEEEEECTTSCCCTTCEEEEEEEEEECTTCT
T ss_pred HHHHHHHHHCCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 99999998559976521653112002104777613565655413632047750477645567750587035642168876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~did~~i~Hq~~~~i~~~i~~~Lgl~~ek~~~s~~~l 320 (372)
T d1teda_ 241 DGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQSVRSLGISAELAAQSWDVL 320 (372)
T ss_dssp TSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHHHTTCCGGGCSCEEECCSCHHHHHHHHHHHTCCGGGGHHHHHHH
T ss_pred CCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 55456778776320014777999998889999987876399878742232247659999999998198978816568888
Q ss_pred ---------------------------------------------------E
Q ss_conf ---------------------------------------------------8
Q 001511 467 ---------------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~GN~~sasip~~L~~~l~~g~~~~g~d~vll~~fG~G~s~~~~ll~~~~~ 372 (372)
T d1teda_ 321 ARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIRR 372 (372)
T ss_dssp HHHCBCTHHHHHHHHHHHHHSCSSSSSSEEEEEEEEETTTEEEEEEEEECCC
T ss_pred HCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHEEECC
T ss_conf 4047748879999999999838878899889999995899589876325229
|
| >d1mkfa_ b.116.1.1 (A:) Viral chemokine binding protein m3 {Murid herpesvirus 4, MuHV-4 [TaxId: 33708]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Viral chemokine binding protein m3 superfamily: Viral chemokine binding protein m3 family: Viral chemokine binding protein m3 domain: Viral chemokine binding protein m3 species: Murid herpesvirus 4, MuHV-4 [TaxId: 33708]
Probab=100.00 E-value=0 Score=27955.71 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 hssgvstqsvdlsqikrgdeiqahcltpaetevtecagilkdvlsknlhelqglcnvknkmgvpwvsveelgqeiitgRL 80 (371)
T d1mkfa_ 1 HSSGVSTQSVDLSQIKRGDEIQAHCLTPAETEVTECAGILKDVLSKNLHELQGLCNVKNKMGVPWVSVEELGQEIITGRL 80 (371)
T ss_dssp CCSEEEECCCCTTTSTTHHHHHHHHSSSCCSSTHHHHHHHHHHHHHCTTGGGGGCSEEEEEEEECEEEGGGTEEEEEECC
T ss_pred CCCCCCCCCCCHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCCC
T ss_conf 98774343323888445425665207821003677778899987642887751430244468846569884125500676
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 P~Ps~~~~~~~~~vrVLV~AEs~tpee~P~~~~~A~~~m~T~~~~~~LsD~N~~F~s~~~~vW~i~i~k~~VD~~mLT~A 160 (371)
T d1mkfa_ 81 PFPSVGGTPVNDLVRVLVVAESNTPEETPEEEFYAYVELQTELYTFGLSDDNVVFTSDYMTVWMIDIPKSYVDVGMLTRA 160 (371)
T ss_dssp CCSSCCCCTTSCEEEEEEEEECCCCSSCCSSCCCEEEEEECSSCEEEECGGGEEEEETTEEEEEEEEEGGGSSTTCEEEE
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHEEEEEEEEEECCCCEEEEECCEEEEEEECCHHEECHHHHHHH
T ss_conf 77755787667648999995179987880788765441044554785024643787400279999646001122143355
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~FL~~~P~~k~T~mi~Y~~TFTWCGeigai~e~~~P~PS~~A~~PVC~~~~RY~~~kF~~~DGC~~Et~~~~~s~i~P~~ 240 (371)
T d1mkfa_ 161 TFLEQWPGAKVTVMIPYSSTFTWCGELGAISEESAPQPSLSARSPVCKNSARYSTSKFCEVDGCTAETGMEKMSLLTPFG 240 (371)
T ss_dssp EESSCCTTCEEEEEEEEETTEEEEEEEEEECTTSCCBCCSEEEEETTSSGGGGSSSTTTTTTTCCGGGTSCCEEECSCTT
T ss_pred HHHHHCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEECCCCCCCCCCCCCCEEECCCC
T ss_conf 67754767608998436565053403254368778997610038542004665347524136743000555640555578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~P~~qa~mNTC~C~~KY~~~~L~~~~~i~i~~ia~~~~~~~P~YVm~~YF~St~~N~~~~s~~L~~C~~~mtsH~G~~~~ 320 (371)
T d1mkfa_ 241 GPPQQAKMNTCPCYYKYSVSPLPAMDHLILADLAGLDSLTSPVYVMAAYFDSTHENPVRPSSKLYHCALQMTSHDGVWTS 320 (371)
T ss_dssp SCSSCEEEESTHHHHHHCSSCCCCCSCEEEEEEECGGGCCSCEEEEEEEECCCCCCTTSCCCCEEEEEEEEEEETTEEEE
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCEEE
T ss_conf 98440303532058882476577334188876225233467406788750666667668898644899998743673013
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------8
Q 001511 467 --------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~s~QCP~~~~~G~~q~VL~~~~~pt~~~~iVGvsi~~eGQq~Ri~Y~Gdh 371 (371)
T d1mkfa_ 321 TSSEQCPIRLVEGQSQNVLQVRVAPTSMPNLVGVSLMLEGQQYRLEYFGDH 371 (371)
T ss_dssp CCCSSCCEEEEECSSTTEEEEEECGGGGGGEEEEEEEETTEEEEEESSCCC
T ss_pred EECCCCCEEEEECCCEEEEEEEECCCCCCCEEEEEEEECCCEEEEECCCCC
T ss_conf 313557556730676068999982466764056999974700021012589
|
| >d1r53a_ d.258.1.1 (A:) Chorismate synthase, AroC {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Chorismate synthase, AroC superfamily: Chorismate synthase, AroC family: Chorismate synthase, AroC domain: Chorismate synthase, AroC species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=27953.62 Aligned_cols=1 Identities=0% Similarity=0.969 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 MnsfG~~lr~ttfGESHG~alg~vidG~PaG~~i~~~~I~~~L~RR~pG~~~~~t~R~E~D~veilSGv~~G~TtGsPI~ 80 (371)
T d1r53a_ 1 MSTFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRRRPGQSKLSTPRDEKDRVEIQSGTEFGKTLGTPIA 80 (371)
T ss_dssp CCEECSSSEEEEECCTTSSEEEEEEECCCTTCBCCGGGTHHHHHTTCC------------CCCEECSSEETTEECSSCEE
T ss_pred CCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCEE
T ss_conf 98776534898415478884489980508588838999999996459999998866899984899243208978455207
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~kyg~~d~~gggrsSaReTa~rvaaGaia~~~L~~~~gI~v~s~V~~IG~ 160 (371)
T d1r53a_ 81 MMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIKASSGGGRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGE 160 (371)
T ss_dssp EEEEC-----------------------------------------CCCHHHHHHHHHHHHHHHHTTCCEEEEEEEEETT
T ss_pred EEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECC
T ss_conf 88814532310010133324668741776764486533565415688899999999999999998489799999998611
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 i~~~~~~~d~~~~~~~~~~~~~~~~~~~~vrc~D~~~~~~m~~~I~~ak~~gDSlGGivev~~~gvP~GLG~p~fdkLda 240 (371)
T d1r53a_ 161 IKMNRDSFDPEFQHLLNTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFDKLEA 240 (371)
T ss_dssp EECCCCTTCHHHHHHHHHCCHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHTTCCCCEEEEEEEESCCTTCSBTTTBCHHH
T ss_pred EECCCCCCCHHHHHCCCHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCH
T ss_conf 77154345612332214465655553196107886888999999999972599755089999970589877720044145
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~LA~A~mSIpAVKgVEfG~GF~~a~~~GSe~nD~~~~~~~~g~~~~~tN~aGGi~GGiSnG~pi~~rva~KP~sSi~~~q 320 (371)
T d1r53a_ 241 MLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQGGISNGENIYFSVPFKSVATISQEQ 320 (371)
T ss_dssp HHHHHHHTSTTBCCCEETTTTGGGGSCHHHHHCSBC--------CBCCCCSCSEETTEECSSCEEEEEEECCC-------
T ss_pred HHHHHHHCCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC
T ss_conf 88887742410025650456117645562247762205788864245688777546764896069999857810046877
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------8
Q 001511 467 --------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~Tvd~~~~~~~~~~~gRhDpc~vpra~pV~Eam~alvlad~~L~~~~~d~~ 371 (371)
T d1r53a_ 321 KTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTALVLADALLIQKARDFS 371 (371)
T ss_dssp ----------------CCCSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 547757978776106988981726548999999999999999998516789
|
| >d1c8ba_ c.56.1.2 (A:) Germination protease {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: HybD-like family: Germination protease domain: Germination protease species: Bacillus megaterium [TaxId: 1404]
Probab=100.00 E-value=0 Score=27952.23 Aligned_cols=1 Identities=0% Similarity=1.134 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 m~~~~~l~~y~iRTDLAlEa~E~~~e~~~~~~~~~ei~GV~~~e~~~~~ikiT~V~I~e~Ga~~mgKp~G~YiTiEap~l 80 (371)
T d1c8ba_ 1 MEKELDLSQYSVRTDLAVEAKDIALENQPKPNNQSEIKGVIVKEKEEQGVKISMVEITEEGAEAIGKKKGRYVTLESVGI 80 (371)
T ss_dssp CCCCCCCCCCCCCCCCTTHHHHHHHHHCCC---------CCCSEEEEEEEETTEEEEEEEECHHHHTTTTSCCEEEEEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEEEECCHHHHHHCCCCCCEEEEECCCC
T ss_conf 98655521143537878988998865320113467668769888862986899999782689985899851799846877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~D~~~~~e~~~~v~a~~l~~l~~~~~~~~~~~vLVVGLGN~~VTPDALGP~vv~~l~VTRHL~~~~p~~~~~g~r~Vs 160 (371)
T d1c8ba_ 81 REQDTEKQEEAMEEVFAKELNFFIKSLNIPDDASCLVVGLGNLSVTPDALGPKAVDNLLITRHLFELQPESVQDGFRPVS 160 (371)
T ss_dssp CCCSSSSSSHHHHHHHHHHHHHHHHHTTCCTTCCEEEEECSCSSSGGGCHHHHHHTTCCCCHHHHHHSCCSSCSSCCCEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHEECCEEEEHHHHHHCCHHHCCCCCEEE
T ss_conf 75678899999999999999999863178988817999688877786563701113363343045547254507871256
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 aIaPGVmg~TGiET~EIIkgiVek~kPD~VIaIDALAaRs~~Rln~TIQIsDTGI~PGSGVGN~R~~l~~etLGVPVIAI 240 (371)
T d1c8ba_ 161 AIVPGVMGMTGIETSDIIFGVVKKVNPDFIIAIDALAARSIERVNATIQISDSGIHPGSGVGNKRKEISYETLGIPVIAI 240 (371)
T ss_dssp EECSGGGCCCSSCHHHHHHHHHHHHCCSEEEEEEEECCSSGGGSSSEEEEETTCBCSCSSSSCCCCBSSSCCC-------
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECHHHCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHCCCCEEEE
T ss_conf 88587550344249999999987518989999601013752333564786677858887767555637987829988997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 GVPTVVdAatI~~Dtid~~~~~~~~~~~e~~~~s~~l~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ek~~Li 320 (371)
T d1c8ba_ 241 GIPTVVDAVSITSDTIDFILKHFGREMKEQGKPSKSLLPSGMTFGEKKKLTEDDLPNEEQRQTYLGMIGTLPDEEKRRLI 320 (371)
T ss_dssp --CCCEEEEEEECCEESCCCHHHHTTTTTCC---------------------------------CCCCSSCCCTTHHHHH
T ss_pred CCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 68806601998789999999987543201346531113332333422222222343112204688776246889999999
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------8
Q 001511 467 --------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~EvL~P~~~~l~VTPKeID~~I~~~s~iIs~giN~ALhp~i~~e~~~~y~~ 371 (371)
T d1c8ba_ 321 HEVLAPLGHNLMVTPKEVDMFIEDMANVVAGGLNAALHHEVDQENFGAYTH 371 (371)
T ss_dssp HHHTCSSCTTEEEEETTHHHHHHHHHHHHHHHHGGGGSCCCCSCCCCSSCC
T ss_pred HHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC
T ss_conf 997572479655675738999999999999898898677888778764339
|
| >d1to6a_ c.141.1.1 (A:) Glycerate kinase GlxK {Neisseria meningitidis, (serogroup A) [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Glycerate kinase I superfamily: Glycerate kinase I family: Glycerate kinase I domain: Glycerate kinase GlxK species: Neisseria meningitidis, (serogroup A) [TaxId: 487]
Probab=100.00 E-value=0 Score=27952.04 Aligned_cols=1 Identities=0% Similarity=0.237 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 MkiliApDsFKgslsA~ea~~ai~~g~~~~~p~~~~~~~P~aDGGEGt~dal~~~~~g~~~~~~v~gplg~~v~a~~~~~ 80 (371)
T d1to6a_ 1 MKIVIAPDSFKESLTAQQVAEAIKRGFQQSIADVECLLCPVGDGGEGTVDAIRHSLDLEEKCLQVTGSFGQKEVMRYFQK 80 (371)
T ss_dssp CEEEECCCCBTTTBCHHHHHHHHHHHHHHHCTTCEEEECCCCSSSTTHHHHHHTTSCCEEEEEEEECTTSSEEEEEEEES
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCEEEEEEEECCCCCCEEEEEECC
T ss_conf 90999943888862899999999999998599988999730648543999999863997999999899998157899637
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~tAvIE~A~asGL~l~~~~~r~p~~~tT~G~GelI~~Al~~G~~~iilglGGSAT~DgG~G~L~ALG~~f~D~~g~~l~ 160 (371)
T d1to6a_ 81 EQLALFEVADLVGLGKIPLEKRNPLQIQTRGIGELIRHLISQEIKEIYIGVGGTASNDGGIGIAAGLGYQFYDEDGNALP 160 (371)
T ss_dssp SSEEEEETHHHHBGGGSCTTSCCTTSCCCHHHHHHHHHHHHTTCCEEEEEECSBCCCSTTHHHHHTTTCEEECTTSCBCC
T ss_pred CCEEEEHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCEECCCCCCCC
T ss_conf 87543016663676303887777112246119999999997699769997158636616789999614536888999888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~g~~L~~i~~id~~~~~~~l~~v~~~ia~DV~npL~G~~GAa~vfgpQKGa~~~~v~~le~~l~~~a~~~~~~~~~~~g 240 (371)
T d1to6a_ 161 ACGQSLLNLASVSTENRYKIPEDVHIRILADVVSPLCGHQGATYTFGKQKGLDSTMFEVVDQAIQDFYEKVSPATLKLKG 240 (371)
T ss_dssp SSGGGGGTCCEEECSSCCCCCTTCEEEEEESCCCCSSSTTSHHHHHSGGGTCCGGGHHHHHHHHHHHHHHHCGGGGGCTT
T ss_pred CCCHHHHHHHCCCCCCCCCHHHCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCC
T ss_conf 86153675002662368711342849999556765547878645650445887899999999999999984311015678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~gaAGG~~~~l~~~l~a~~~~G~~~v~~~~~l~~~i~~aDlVITGEG~~D~QSl~GK~p~~va~~ak~~~pviai~G~v~ 320 (371)
T d1to6a_ 241 AGAGGGIAGGLCAFAQASIVSGIDTCLDLIDFDKKVSDVDLVIVGEGRLDRQSLAGKAPIGVAKRTPVGVPVVAICGSLV 320 (371)
T ss_dssp TTTTTTHHHHHHHHSCCEEEEHHHHHHHHTTHHHHTTTCSEEEECCSEECSTTTTTCHHHHHHTTSCTTCCEEEEESEEC
T ss_pred CCCHHHHHHHHHHHHCCEECCCHHHHHHHHCHHHHHCCCCEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 63102578999999588846509999988599978356998997887552321265767999999767998899977557
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------8
Q 001511 467 --------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~~~~~Gi~~~~si~~~~~~l~~a~~~a~~~L~~~a~~i~r~l~~~~~ 371 (371)
T d1to6a_ 321 EDLPSLPFENIQAAFSILEKSEPLEDSLKNASLYLEHTASNIGHLLNMPKI 371 (371)
T ss_dssp TTCCCSSBTTEEEEEECCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 886678754962999758899999999998999999999999999842379
|
| >d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Citrate synthase superfamily: Citrate synthase family: Citrate synthase domain: Citrate synthase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=27952.00 Aligned_cols=1 Identities=100% Similarity=2.230 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~rGL~gv~v~~T~Is~idg~~G~L~YRG~~i~dLa~~~sfEeVa~LL~~G~lP~~~el~~f~~~l~~~~~lp~~~~~~~ 80 (371)
T d1aj8a_ 1 LAKGLEDVYIDQTNICYIDGKEGKLYYRGYSVEELAELSTFEEVVYLLWWGKLPSLSELENFKKELAKSRGLPKEVIEIM 80 (371)
T ss_dssp CCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCCCCCCEEEEEECCEEECCCCEEEECCEEHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 99777998162686712768988799988769998646999999999977979899999999999997168988999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~p~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~a~~~~i~~~~~~~~~~~~~~~p~~~~~~a~~~l~~~ 160 (371)
T d1aj8a_ 81 EALPKNTHPMGALRTIISYLGNIDDSGDIPVTPEEVYRIGISVTAKIPTIVANWYRIKNGLEYVPPKEKLSHAANFLYML 160 (371)
T ss_dssp HHSCTTCCHHHHHHHHHHHHHHHSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 86114641267777776410110100124310146788899999999999999999837998879860056899987652
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~g~~~~~~~~~~l~~~Lvl~aDHg~n~Stfa~r~vaSt~~d~~~a~~ag~~al~G~~hgga~~~~~~~~~~~~~~~~~~~ 240 (371)
T d1aj8a_ 161 HGEEPPKEWEKAMDVALILYAEHEINASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVEEAIKQFMEIGSPEKVEE 240 (371)
T ss_dssp HSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHHHCSGGGHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 38878879999999999983677777620656654115775202888888871542011016799999985065420699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~v~~~l~~~~~i~GfGH~vy~~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pNvd~~~~~l~~~lg~p 320 (371)
T d1aj8a_ 241 WFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYASKLGDKKLFEIAERLERLVEEYLSKKGISINVDYWSGLVFYGMKIP 320 (371)
T ss_dssp HHHHHHHHTCCCTTBCCSSCSSCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCCBCTTTTHHHHHHTTTCC
T ss_pred HHHHHHHCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99998624776544472211466606889999887630003568999999999987421798838188999999983998
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------8
Q 001511 467 --------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~lf~~~R~~G~~AH~~Eq~~~~~l~RP~~~YvG~~~~~~~~i~~r~ 371 (371)
T d1aj8a_ 321 IELYTTIFAMGRIAGWTAHLAEYVSHNRIIRPRLQYVGEIGKKYLPIELRR 371 (371)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEEEECSCCCBCCCCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCHHHCC
T ss_conf 566669999999999999999998679973855401699899987767659
|
| >d1n7oa1 a.102.3.2 (A:170-540) Hyaluronate lyase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Chondroitin AC/alginate lyase family: Hyaluronate lyase-like catalytic, N-terminal domain domain: Hyaluronate lyase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=0 Score=27951.30 Aligned_cols=1 Identities=0% Similarity=1.500 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~d~y~~lr~~w~~~~~G~~~~~~~d~~~~~~~~~l~~~a~~~~~~~~~~~~~~~lw~dl~~~~~~~~~~~~~~rL~~mA 80 (371)
T d1n7oa1 1 VKDTYTDRLDDWNGIIAGNQYYDSKNDQMAKLNQELEGKVADSLSSISSQADRIYLWEKFSNYKTSANLTATYRKLEEMA 80 (371)
T ss_dssp CCSHHHHHHHHHHHHHTCGGGCCTTCHHHHHHHHHHHHHHHHHHHHSCCSSSCSSSCGGGCCTTSTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 96489999999999863745677687899999999999999999872135677777789987775147999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~ay~~pgs~lY~d~~l~~~I~~al~~l~~~~y~~~~~~~gNWw~~~Ig~P~~l~~~lill~~~l~~~~~~~~~~~i~~~~ 160 (371)
T d1n7oa1 81 KQVTNPSSRYYQDETVVRTVRDSMEWMHKHVYNSEKSIVGNWWDYEIGTPRAINNTLSLMKEYFSDEEIKKYTDVIEKFV 160 (371)
T ss_dssp HHHTCTTSTTTTCHHHHHHHHHHHHHHHHHTSSTTCCCCSCHHHHHTHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 99859998553699999999999999997089888888898303640758999999988311169999999999999867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 p~p~~~~~~~~~~~~~TGaN~vd~a~~~i~~glL~~d~~~v~~a~~~i~~v~~~v~~gdG~~~DgSf~qH~~~~Y~G~YG 240 (371)
T d1n7oa1 161 PDPEHFRKTTDNPVKALGGNLVDMGRVKVIAGLLRKDDQEISSTIRSIEQVFKLVDQGEGFYQDGSYIDHTNVAYTGAYG 240 (371)
T ss_dssp CCTTEECTTSSSCEECCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGGSCCSSSSEECTTSCEEETTTEECTTTHH
T ss_pred CCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCEECCCCEECCCCEECCCCCH
T ss_conf 88212035677866064116999899999999986799999999999887741102688440377601257622167513
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~l~~~~~~~~~l~gT~~~~~~~~~~~l~~~i~~g~~~~~~~G~~~d~v~GR~ISR~~~~~~~~g~~~~~~~~~l~~~~ 320 (371)
T d1n7oa1 241 NVLIDGLSQLLPVIQKTKNPIDKDKMQTMYHWIDKSFAPLLVNGELMDMSRGRSISRANSEGHVAAVEVLRGIHRIADMS 320 (371)
T ss_dssp HHHHHHHHHHHHHHTTSSSCCCHHHHTHHHHHHHHTTGGGEETTEECGGGSGGGGGCTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99999999999997799888897899999999995433010555015557886225788666414899999999985149
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------8
Q 001511 467 --------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~~~~~~~iK~~i~~~~~~~~~~~~~~~~~~~~~~~ll~d~~i~~~p~ 371 (371)
T d1n7oa1 321 EGETKQRLQSLVKTIVQSDSYYDVFKNLKTYKDISLMQSLLSDAGVASVPR 371 (371)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSSCGGGGCCSHHHHHHHHHHHHCTTSCCCCC
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 999999999999999966875452225345789999999865898898998
|
| >d1f1sa1 a.102.3.2 (A:249-619) Hyaluronate lyase {Streptococcus agalactiae [TaxId: 1311]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Chondroitin AC/alginate lyase family: Hyaluronate lyase-like catalytic, N-terminal domain domain: Hyaluronate lyase species: Streptococcus agalactiae [TaxId: 1311]
Probab=100.00 E-value=0 Score=27949.05 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~d~y~~l~~~w~~~~~G~~~~d~~d~~~~~~~~~~~~~a~~~~~~~~~~~~~~~lw~dl~~~~~s~~~~~~~~rL~~mA~ 80 (371)
T d1f1sa1 1 EDNFTKLLDKWNDVTIGNYVYDTNDSNMQKLNQKLDETNAKNIEAIKLDSNRTFLWKDLDNLNNSAQLTATYRRLEDLAK 80 (371)
T ss_dssp CSHHHHHHHHHHHHHTCGGGCCTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCSCSCGGGCCTTSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 97699999999998638766786677899999999999999998612676656667899977752589999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 aY~~pgs~ly~d~~l~~~I~~aL~~l~~~~y~~~~~~~~~~NWW~~eIg~P~~l~~~lill~d~l~~~~~~~~~~~i~~~ 160 (371)
T d1f1sa1 81 QITNPHSTIYKNEKAIRTVKESLAWLHQNFYNVNKDIEGSANWWDFEIGVPRSITGTLSLMNNYFTDAEIKTYTDPIEHF 160 (371)
T ss_dssp HHTCTTSTTTTCHHHHHHHHHHHHHHHHHTSSTTCCCCTTSCHHHHHTHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 98499985547999999999999999983899876688989861123175799999998720015999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~p~p~~~~~~~~~~~~~TGaN~vd~a~~~i~~glL~~d~~~v~~a~~~i~~v~~~v~~gdG~~~DgSfiqH~~v~Y~G~Y 240 (371)
T d1f1sa1 161 VPDAEYFRKTLVNPFKALGGNLVDMGRVKIIEGLLRKDNTIIEKTSHSLKNLFTTATKAEGFYADGSYIDHTNVAYTGAY 240 (371)
T ss_dssp CCCTTEESTTSSCCEECCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCCBSSSSEEBTTSCEEETTTEECTTTH
T ss_pred CCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHCCCCEECCCCC
T ss_conf 78813322567886636522699999999999998289999999999876561103578723047661004670006762
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 G~~~l~~~~~~~~~l~gT~~~~~~~~~~~l~~~i~~g~~~~~~~g~~~~~v~GR~IsR~~~~~~~~g~~~~~~~~~l~~~ 320 (371)
T d1f1sa1 241 GNVLIDGLTQLLPIIQETDYKISNQELDMVYKWINQSFLPLIVKGELMDMSRGRSISREAASSHAAAVEVLRGFLRLANM 320 (371)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCCCHHHHHHHHHHHHHTTGGGEETTEECGGGSGGGGGCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 39999999999999767988888789999999999700456357643565677622478876632799999999987334
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------8
Q 001511 467 --------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~~~~~~~~vK~~i~~~~~~~~~~~~~~~~~~~~~~~ll~d~~I~~~p 371 (371)
T d1f1sa1 321 SNEERNLDLKSTIKTIITSNKFYNVFNNLKSYSDIANMNKLLNDSTVATKP 371 (371)
T ss_dssp CCSHHHHHHHHHHHHHHHHCCSSCGGGGCCSHHHHHHHHHHHHCTTSCCCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 989999999999999984587644100645599999999985578888898
|
| >d1eg1a_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Trichoderma reesei, Endoglucanase I [TaxId: 51453]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: Glycosyl hydrolase family 7 catalytic core domain: Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) species: Trichoderma reesei, Endoglucanase I [TaxId: 51453]
Probab=100.00 E-value=0 Score=27946.44 Aligned_cols=1 Identities=0% Similarity=-0.892 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 QQ~Gt~t~E~HP~ltwq~CT~~ggCt~~~g~vV~Danwrw~H~~~~~~c~~gn~~~~~lCpd~~tCa~nC~ldgaDY~~~ 80 (371)
T d1eg1a_ 1 EQPGTSTPEVHPKLTTYKCTKSGGCVAQDTSVVLDWNYRWMHDANYNSCTVNGGVNTTLCPDEATCGKNCFIEGVDYAAS 80 (371)
T ss_dssp CEECSSSCCCCCBCCEEEEETTTEEEEECCEEEECGGGSCEECTTCCBSEETTEECTTTCSSSHHHHHHCEECCCCTTTT
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCEEECCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 98887767548851447515899827723569980573202006986543388655234887566776246557763675
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 GVttsG~sltL~~~~~~~~~~~~~vGsRvYLl~~d~~Yqmf~Llg~EftFdVD~S~lpCGlNgALYfveM~adGg~s~~n 160 (371)
T d1eg1a_ 81 GVTTSGSSLTMNQYMPSSSGGYSSVSPRLYLLDSDGEYVMLKLNGQELSFDVDLSALPCGENGSLYLSQMDENGGANQYN 160 (371)
T ss_dssp TEEECSSEEEEESCEECSSSSEECCCCEEEEECTTSSBCCBCCTTSEEEEEECTTSCCTTEEEEEEEECCCTTTTCCSSC
T ss_pred CEEECCCCEEEEEEEECCCCCCCEECCEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 26951884789999824766532023327997588837888726971688864478875223366665226568966667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~aGA~YGtGYCDAQCp~~~w~~g~~~~g~~G~CC~EmDIwEANs~A~a~TpH~C~~~~CD~~GC~~NpYR~g~~~fyG~G 240 (371)
T d1eg1a_ 161 TAGANYGSGYCDAQCPVQTWRNGTLNTSHQGFCCNEMDILEGNSRANALTPHSCTATACDSAGCGFNPYGSGYKSYYGPG 240 (371)
T ss_dssp CCGGGGTCCCCCTTCCBCSEETTEECTTCCBCCCCEEEEEEECSSCBCBEEECBCSSCBCSSCCCBCTTTTTCTTTSSTT
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 66663675323166873332136677578753035401015454134202434568741888867774555786211489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~tVDT~k~fTVVTQF~t~~~t~~G~LtEIrR~YVQ~GkvI~n~~~~~~~~~~~~~~~~~ggl~~mg~al~rGmVLv~SlW 320 (371)
T d1eg1a_ 241 DTVDTSKTFTIITQFNTDNGSPSGNLVSITRKYQQNGVDIPSAQPGGDTISSCPSASAYGGLATMGKALSSGMVLVFSIW 320 (371)
T ss_dssp SSSCTTSCEEEEEEEEETTSSTTSCEEEEEEEEEETTEECCCSSTTCEEECCCSGGGGGTTTHHHHHHHHHCBEEEEEEE
T ss_pred CCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEE
T ss_conf 63026897389988665898664434477579997998902776566644454442336889999888608869999979
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------8
Q 001511 467 --------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------~ 467 (1064)
+
T Consensus 321 dd~~~~M~WLDs~~~GpC~~~~g~p~~ve~~~p~a~V~~SNIKfG~I~ST~ 371 (371)
T d1eg1a_ 321 NDNSQYMNWLDSGNAGPCSSTEGNPSNILANNPNTHVVFSNIRWGDIGSTT 371 (371)
T ss_dssp ECTTTTTHHHHBGGGCSBCTTTTCHHHHHHHCTTCEEEEEEEEEESTTTCC
T ss_pred ECCCCCCEEECCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECEECCCCCCC
T ss_conf 279998523058988888888898668623289977998727583787889
|
| >d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Xylanase species: Bacillus stearothermophilus, Xt6 [TaxId: 1422]
Probab=100.00 E-value=0 Score=27944.56 Aligned_cols=1 Identities=100% Similarity=0.371 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~p~l~~~~~~~f~~G~av~~~~l~~~~~~~~~~~~Fn~~t~eN~mKW~~iep~~G~~n~~~aD~~v~~a~~n 80 (371)
T d1r85a_ 1 KPHISALNAPQLDQRYKNEFTIGAAVEPYQLQNEKDVQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQADRIVKFAKAN 80 (371)
T ss_dssp CCCCBGGGSCCHHHHHTTTCEEEEEECGGGGGCHHHHHHHHHHCSEEEESSTTSHHHHCSBTTBCCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHCCCEEEEECCHHHCCCHHHHHHHHHHCCEECCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 99664255664999860578387843755547988999999866900326467634124779925838899999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 gi~vrGH~LvW~~~~P~W~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~I~~v~~rY~g~I~~WDVvNE~~~~~~~~r 160 (371)
T d1r85a_ 81 GMDIRFHTLVWHSQVPQWFFLDKEGKPMVNETDPVKREQNKQLLLKRLETHIKTIVERYKDDIKYWDVVNEVVGDDGKLR 160 (371)
T ss_dssp TCEEEEECSCCSTTCCGGGGBCTTSSBGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEESCBCTTSSBC
T ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCC
T ss_conf 99787767786233354101256666444445422333699999999999999999974897528998731106998733
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~g~dyi~~af~~A~~~~~p~~~L~~Ndy~~~~~~k~~~~~~~v~~l~~~g~pidgIG~Q~H~~~~~~~~~~i~ 240 (371)
T d1r85a_ 161 NSPWYQIAGIDYIKVAFQAARKYGGDNIKLYMNDYNTEVEPKRTALYNLVKQLKEEGVPIDGIGHQSHIQIGWPSEAEIE 240 (371)
T ss_dssp CCHHHHHHTTHHHHHHHHHHHHHHCTTSEEEEEESCTTSTTHHHHHHHHHHHHHHTTCCCCEEEECCEECSSSSCHHHHH
T ss_pred CCCHHHCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 37522115858999999999986687546665145644440258999999999977997441433412367998889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~l~~~a~~Gl~i~ITElDV~~~~~~~~~~~~~~~~~~e~~~~QA~~y~~~~~~~~~~~p~v~git~WG~~D~~sW~~~~ 320 (371)
T d1r85a_ 241 KTINMFAALGLDNQITELDVSMYGWPPRAYPTYDAIPKQKFLDQAARYDRLFKLYEKLSDKISNVTFWGIADNHTWLDSR 320 (371)
T ss_dssp HHHHHHHHTTCEEEEEEEEECSSCSSCCCCSSGGGSCHHHHHHHHHHHHHHHHHHHHTGGGEEEEEESSSSTTSCGGGGG
T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
T ss_conf 99999997399237866674167776445766542328999999999999999999638974599986898797446788
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------8
Q 001511 467 --------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pLlfD~~~~pKpAy~ai~d~~ 371 (371)
T d1r85a_ 321 ADVYYDANGNVVVDPNAPYAKVEKGKGKDAPFVFGPDYKVKPAYWAIIDHK 371 (371)
T ss_dssp CCEEECTTSCEECCTTSCCSEEETTCSCCCCSSBCTTSBBCHHHHHHHSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 865435545533222222222235677788734689988977999986349
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=0 Score=27940.68 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~ 80 (371)
T d1k8kc_ 1 AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 80 (371)
T ss_dssp CEEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEE
T ss_conf 95789998838999989999999994889899998889978999995588998889999799999999979993999862
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s 160 (371)
T d1k8kc_ 81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160 (371)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 03321100122322110001111111211000002576302544203343311100101112221111111111100013
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~ 240 (371)
T d1k8kc_ 161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 240 (371)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEE
T ss_conf 47679998401576431001221111111101124404766747898751233210000147860588641012100000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (371)
T d1k8kc_ 241 SETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 320 (371)
T ss_dssp CSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred CCCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCEE
T ss_conf 14665203654699979999819926787760898628872020676542124622001685065205871245566141
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------8
Q 001511 467 --------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~~~~~~l~~~ 371 (371)
T d1k8kc_ 321 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDLKIV 371 (371)
T ss_dssp SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCTTCCCC
T ss_pred CCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCHHHHCCEECC
T ss_conf 255569889999948998656799999189939999698684653587639
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=0 Score=27947.17 Aligned_cols=1 Identities=0% Similarity=-1.789 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 k~~~~~~p~~~~~~~~~v~~~l~~~~~~~G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~ 80 (371)
T d2fnua1 1 KEFAYSEPCLDKEDKKAVLEVLNSKQLTQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTP 80 (371)
T ss_dssp CCEESCCCCCCHHHHHHHHHHHTSSCCSSSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECS
T ss_pred CEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCCCCCCCCEEECCC
T ss_conf 92067899899999999999981898668977999999999997829399982689999999999544579977052013
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~t~~a~~~ai~~~G~~pv~vDi~~~~~~~~~~~~~~~~~~t~avi~vh~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga 160 (371)
T d2fnua1 81 ISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDYAGKSVEVESVQKLCKKHSLSFLSDSSHALGS 160 (371)
T ss_dssp SSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTC
T ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHCCCC
T ss_conf 44332200022058632123332223221012333046200001123445653334532121102220011314441586
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~G~~g~~~~~Sf~~~K~l~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~ 240 (371)
T d2fnua1 161 EYQNKKVGGFALASVFSFHAIKPITTAEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLS 240 (371)
T ss_dssp EETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHH
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 01030478643222335566534320154578762122200000012101122322222311256510033145555544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 qL~~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~L~~~gI~~~~~y~pl~~ 320 (371)
T d2fnua1 241 QLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQ 320 (371)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGG
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCC
T ss_conf 43211210334443310001212223333332233333333333322222221067999999999879984144765112
Q ss_pred --------------------------------------------------E
Q ss_conf --------------------------------------------------8
Q 001511 467 --------------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------------~ 467 (1064)
=
T Consensus 321 ~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~~ 371 (371)
T d2fnua1 321 YQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 371 (371)
T ss_dssp SHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 898884266689989999984959896888889999999999999999748
|
| >d2dexx3 d.126.1.5 (X:294-663) Peptidylarginine deiminase Pad4, catalytic C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Peptidylarginine deiminase Pad4, catalytic C-terminal domain domain: Peptidylarginine deiminase Pad4, catalytic C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27874.89 Aligned_cols=1 Identities=0% Similarity=-0.593 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 APwimtpnt~~p~eV~v~~~~~n~~Fi~~v~~l~~~a~~~l~i~~~~~~~~DrW~QDe~E~GY~qaP~~~~pVvldspR~ 80 (370)
T d2dexx3 1 APWIMTPNTQPPQEVYACSIFENEDFLKSVTTLAMKAKCKLTICPEEENMDDQWMQDEMEIGYIQAPHKTLPVVFDSPRN 80 (370)
T ss_dssp CCCBCCCTTSCEEEEEECCCSSCHHHHHHHHHHHHHTTCEEEECCHHHHTTCCCTTTSEEEEEEEETTEEEEEEEECTTC
T ss_pred CCEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEECCCCCCEEEECCCCCCCEEEECCCC
T ss_conf 98574689998648999861268999999999999729956746524578980300021130342689974558607220
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~gl~~fp~~~llg~dfG~~tr~~~~~~v~~lDSfGNLEvsPPvt~~Gk~YPlGRIliG~s~~~~~~gr~m~~~v~dFL~A 160 (370)
T d2dexx3 81 RGLKEFPIKRVMGPDFGYVTRGPQTGGISGLDSFGNLEVSPPVTVRGKEYPLGRILFGDSCYPSNDSRQMHQALQDFLSA 160 (370)
T ss_dssp SGGGGHHHHTTSBTTBEEEECSCSSSCCCGGGSGGGEEECCCEEETTEEETTCCEEEEECSSCCTTCCCCCHHHHHHHHH
T ss_pred CCCHHCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 33011527774178753387348877642023567734479862588426777488547788876545330899999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 Q~VQ~Pv~L~sdWL~VGHVDEf~~FvPa~~~kgfrlLlAsP~a~~~Ll~~~q~~GhG~a~~f~g~~~~~~~tI~~iL~d~ 240 (370)
T d2dexx3 161 QQVQAPVKLYSDWLSVGHVDEFLSFVPAPDRKGFRLLLASPRSCYKLFQEQQNEGHGEALLFEGIKKKKQQKIKNILSNK 240 (370)
T ss_dssp SGGGCCEEEECTTBSSCCGGGTEEEEECSSGGGEEEEEEEHHHHHHHHHHHHHTTCTTCEETTTCTTSCCEEHHHHHHCH
T ss_pred HCCCCCCEECCCHHHCCCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHCCH
T ss_conf 64599802305201057401017876369998538996388999999999987578646504655444221199986387
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~l~~~N~~~q~~Id~nr~iLKrELGLte~DIIdiP~LF~~~~~~~A~a~fP~mVNmlVlg~~L~iPkPfGP~inG~c~le 320 (370)
T d2dexx3 241 TLREHNSFVERCIDWNRELLKRELGLAESDIIDIPQLFKLKEFSKAEAFFPNMVNMLVLGKHLGIPKPFGPVINGRCCLE 320 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCEEECGGGCEEESSCCTTSCEEETTEEEEECCCCCEETTEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEHHH
T ss_conf 78999999998631789999987099867731253440545878621237641666874033067899788488630799
Q ss_pred -------------------------------------------------E
Q ss_conf -------------------------------------------------8
Q 001511 467 -------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------~ 467 (1064)
-
T Consensus 321 e~v~~lleplGl~c~FiDD~~sYh~~~GeVHcgTNv~R~pf~~kWW~~~p 370 (370)
T d2dexx3 321 EKVCSLLEPLGLQCTFINDFFTYHIRHGEVHAGTNVRRKPFSFKWWNMVP 370 (370)
T ss_dssp HHHHHHHGGGTCEEEEECCTTTTGGGTCCTTTTEEEEECCCSSCGGGCCC
T ss_pred HHHHHHHCCCCCEEEEECCCHHHHHCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99999745478758995473788861772540464441788866702689
|
| >d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NIF3 (NGG1p interacting factor 3)-like superfamily: NIF3 (NGG1p interacting factor 3)-like family: NIF3 (NGG1p interacting factor 3)-like domain: Nif3-related protein BC4286 species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=0 Score=27870.50 Aligned_cols=1 Identities=0% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~p~~~eii~~le~~~P~~lAe~wDnvGL~vg~~~~~V~~I~valD~t~~vi~eAi~~~adlIItHHPl~f~~~k~l~~~~ 80 (370)
T d2gx8a1 1 IPNGHEIISLFESMYPKHLAMEGDKIGLQIGALNKPVRHVLIALDVTEEVVDEAIQLGANVIIAHHPLIFNPLKAIHTDK 80 (370)
T ss_dssp CCBHHHHHHHHHHHSCGGGSCTTCCCEEEESCSSSBCCEEEEESSCCHHHHHHHHHHTCCEEEESSCSCCSCCSCCCTTS
T ss_pred CCCHHHHHHHHHHHCCHHHCCCCCCCEEEECCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 99789999999986999671567987379689977649899997699999999997799999979987768964466788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~li~~~I~vys~HTnlD~~~~G~nd~La~~Lgl~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~agag~ 160 (370)
T d2gx8a1 81 AYGKIIEKCIKNDIAIYAAHTNVDVAKGGVNDLLAEALGLQNTEVLAPTYAEEMKKVVVFVPVTHAEEVRKALGDAGAGH 160 (370)
T ss_dssp HHHHHHHHHHHTTCEEEECCHHHHHSTTSHHHHHHHHTTCEEEEEEEEEEEEEEEEEEEEECHHHHHHHHHHHHHTTTTC
T ss_pred CHHHHHHHHHHCCCEEEEECCCHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCHHCCCCC
T ss_conf 05699999997897699932402105775799999984897533335555555542389817256666653000037875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ig~y~~~~~~~~g~G~~~~~~~~~P~ig~~~~~~~~~e~~~e~~~~~~~~~~v~~al~~ahpy~~~~~~~~~~~~~~~~~ 240 (370)
T d2gx8a1 161 IGNYSHCTFSSEGTGTFVPQEGTNPYIGETGQLERVEEVRIETIIPASLQRKVIKAMVTAHPYEEVAYDVYPLDNKGETL 240 (370)
T ss_dssp BTTEEEEEEEEEEEEEEEEC-----------CCEEEEEEEEEEEEEGGGHHHHHHHHHHHSSSSSCCEEEEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHEEEECHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCC
T ss_conf 45632131013676541477788875676785664131430220427778889998887288610133421234655555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 G~Grig~l~~p~~l~~~~~~vk~~l~~~~vr~~g~~~~~I~~VAvc~GSG~s~i~~a~~~gaDv~ITGe~k~h~~~dA~~ 320 (370)
T d2gx8a1 241 GLGKIGYLQEEMTLGQFAEHVKQSLDVKGARVVGKLDDKVRKVAVLGGDGNKYINQAKFKGADVYVTGDMYYHVAHDAMM 320 (370)
T ss_dssp EEEEEEEEEEEEEHHHHHHHHHHHTTCSCCEEESCTTSEEEEEEEEEEECGGGHHHHHHTTCSEEEEECCCHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
T ss_conf 76459993786039999999998719982899588887423799973662789999987799899982886799999997
Q ss_pred -------------------------------------------------E
Q ss_conf -------------------------------------------------8
Q 001511 467 -------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~gi~lId~GH~sE~~~~~~l~~~L~~~~~~~~~~i~v~~S~~~~dP~~~i 370 (370)
T d2gx8a1 321 LGLNIVDPGHNVEKVMKQGVQKQLQEKVDAKKLNVHIHASQLHTDPFIFV 370 (370)
T ss_dssp HTCEEEECCGGGGGHHHHHHHHHHHHHHHHTTCCCEEEECCCCCCCCCCC
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEC
T ss_conf 69979978832628999999999999750048856999954778976449
|
| >d2hgsa4 d.142.1.6 (A:3-201,A:304-474) Eukaryotic glutathione synthetase ATP-binding domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Eukaryotic glutathione synthetase ATP-binding domain domain: Eukaryotic glutathione synthetase ATP-binding domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27870.20 Aligned_cols=1 Identities=0% Similarity=-0.991 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~l~d~~~~~~l~~~a~dwa~~hGl~m~~~~~~~~~~~~~~aP~tL~Pspfpr~~F~~a~~vq~~~neL~~~vS~D 80 (370)
T d2hgsa4 1 TNWGSLLQDKQQLEELARQAVDRALAEGVLLRTSQEPTSSEVVSYAPFTLFPSLVPSALLEQAYAVQMDFNLLVDAVSQN 80 (370)
T ss_dssp CCSGGGGSCHHHHHHHHHHHHHHHHHTTCEEECSSCTTCCSSEEECCEESSCCEECHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99876588889999999999999997483654688888878345578685577687899999999999999999999737
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~fL~~~l~~~~~~D~Ft~~L~~i~~~v~~~g~~q~l~Lgl~RSDYMl~~~~~~~~~~KQVE~NTIS~sfggls~~v~~l 160 (370)
T d2hgsa4 81 AAFLEQTLSSTIKQDDFTARLFDIHKQVLKEGIAQTVFLGLNRSDYMFQRSADGSPALKQIEINTISASFGGLASRTPAV 160 (370)
T ss_dssp HHHHHHHHHTHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECSSSCEEEEEEEEECSSCCCHHHHHHSHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHCCCCCCCCCCEEEEEECEEEEECCHHHHHHHHH
T ss_conf 99999999877414799999999999999617866259988200654167777665424786112330002176648999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 Hr~l~~~~~~~~~~~~~p~n~~~~~la~gla~a~~~y~~~KKvQQ~La~pgvLe~Fl~~~~~~~~~lr~tFa~ly~LD~~ 240 (370)
T d2hgsa4 161 HRHVLSVLSKTKEAGKILSNNPSKGLALGIAKAWELYGSTKKVQQELSRPGMLEMLLPGQPEAVARLRATFAGLYSLDVG 240 (370)
T ss_dssp HHHHHHHTTCHHHHTTSCCCCHHHHHHHHHHHHHHHHCCSHHHHHHTTSTTHHHHHSTTCHHHHHHHHHTCCCEEECSSS
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999862555421348899717999999999999974466778987498779987089889999999962314506887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~g~~a~~~a~~~p~~~VLKPQrEGGGnniyg~dI~~~L~~l~~~~e~~ayILMerI~P~~~~~~~vr~g~~~~~~~~iS 320 (370)
T d2hgsa4 241 EEGDQAIAEALAAPSRFVLKPQREGGGNNLYGEEMVQALKQLKDSEERASYILMEKIEPEPFENCLLRPGSPARVVQCIS 320 (370)
T ss_dssp HHHHHHHHHHHHSGGGEEEEESCCSSSCCBCHHHHHHHHHHHTTSGGGGGEEEEECCCCCCEEEEEECTTSCCEEEEEEE
T ss_pred CCCHHHHHHHHHCCHHEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCEEECCCCC
T ss_conf 45269999767390227755632477651015488999997688676667899974378776865898896022056132
Q ss_pred -------------------------------------------------E
Q ss_conf -------------------------------------------------8
Q 001511 467 -------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------~ 467 (1064)
.
T Consensus 321 ElGifG~~l~~~~~~~~N~~~G~LlRTK~~~~~EGGVaaG~g~lDSpylv 370 (370)
T d2hgsa4 321 ELGIFGVYVRQEKTLVMNKHVGHLLRTKAIEHADGGVAAGVAVLDNPYPV 370 (370)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEEEETTCSSCCTTTTSCEEECCEEC
T ss_pred CCCCCEEEEECCCEEEEECCCEEEEECCCCCCCCCCEECCEECCCCCCCC
T ss_conf 22243799957987997165107886278988887810254206686649
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=100.00 E-value=0 Score=27869.16 Aligned_cols=1 Identities=0% Similarity=-0.460 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~g~~ 80 (370)
T d2iida1 1 RNPLAECFQENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWY 80 (370)
T ss_dssp CCTTGGGGCCTTHHHHHHHHHHCSCCCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEE
T ss_pred CCCHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCE
T ss_conf 98557615881489999987647999999996999898889999999998789988999589988770678764877702
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~d~G~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (370)
T d2iida1 81 ANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGK 160 (370)
T ss_dssp EESSCCCEETTCHHHHHHHHHTTCCEEEECSCCTTSEEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHH
T ss_pred ECCCCEEECCCCHHHHHHHHHHCCCCCEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 32575563276489999999838763101025786279618852220233322455433320355543467777887877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (370)
T d2iida1 161 VVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKL 240 (370)
T ss_dssp HHHHHHHSCHHHHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTCGGGTTSBHHHHHHHHHHHTTCCCEEEETTCTTHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 88988742125666530100179999873255577887752100121001467776421001212566655404569999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~ 320 (370)
T d2iida1 241 PTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPY 320 (370)
T ss_dssp HHHHHHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTT
T ss_pred HHHHHHHCCCCCCCCCEEEEEEEECCEEEEEEEECCCCEEEEEEEEEEECCCHHHHHHCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 99999864876336864789888099189999964898179990078853898999607048999899999998337863
Q ss_pred -------------------------------------------------E
Q ss_conf -------------------------------------------------8
Q 001511 467 -------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~~~~~~~~~g~v~~aGd~~~~~~~~~~~a~~sG~~aA~~i~~a~~~ 370 (370)
T d2iida1 321 QFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLASEN 370 (370)
T ss_dssp HHHHHHHHHHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 10234504306668779963201378851099999999999999864249
|
| >d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Pepsin(ogen) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=27867.66 Aligned_cols=1 Identities=100% Similarity=1.201 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~v~ipl~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs 80 (370)
T d3psga_ 1 LVKVPLVRKKSLRQNLIKDGKLKDFLKTHKHNPASKYFPEAAALIGDEPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSS 80 (370)
T ss_dssp CEEEEEEECCCHHHHHHHTTCHHHHHHHCCCCGGGGTCTTSCCSSCCCTTGGGTTCCEEEEEEETTTTEEEEEEEETTCC
T ss_pred CEEEECCCCCCHHHHHHHCCCHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCC
T ss_conf 98981510735889988728289998761146455305555576464033134687799999986898389999967989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~Wv~~~~C~~~~~~~~~~yd~~~Sst~~~~~~~~~~~Yg~Gs~~G~~~~d~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 160 (370)
T d3psga_ 81 NLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAP 160 (370)
T ss_dssp CEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEEEEEEECSCCCGGGGGCS
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEEEEEEEECEEEEEEEEEEEEECCCCEECCCC
T ss_conf 82897865787332566621787564423679718999578359999999778650101211389999603674021456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~~~~~w~v~~~~ 240 (370)
T d3psga_ 161 FDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDS 240 (370)
T ss_dssp CSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSEETTEEEEECE
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCEEECCCCCCHHCCCCEEEEEECCCCEEEEEEEE
T ss_conf 66644545674345688763453554054442226888605888771386378583330341158864135537998724
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 i~v~g~~~~~~~~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~~~~~~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~yi~ 320 (370)
T d3psga_ 241 ITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYIL 320 (370)
T ss_dssp EESSSSEEECTTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEECTTCCEECCGGGGGGCCCEEEEETTEEEEECHHHHEE
T ss_pred EEECCEEEECCCCCCEEEECCCCEEECCHHHHHHHHHHHCCEEECCCCEEEECCCCCCCCEEEEEECCEEEEECHHHEEE
T ss_conf 87299677048970179845886275789999999998587260389677744226778619999899999988599399
Q ss_pred -------------------------------------------------E
Q ss_conf -------------------------------------------------8
Q 001511 467 -------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~a 370 (370)
T d3psga_ 321 QDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 370 (370)
T ss_dssp ECSSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred ECCCEEEEEEEECCCCCCCCCCEEECHHHHCCEEEEEECCCCEEEEEECC
T ss_conf 82992899999744589889719998896667999998999999899649
|
| >d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=0 Score=27866.95 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~v~~~g~~f~~nG~~~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~~k~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~ 80 (370)
T d1rh9a1 1 NNFVYTDGTHFALNGKSLYINGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVARTWAFSHGGSRPLQSAPGVYNEQM 80 (370)
T ss_dssp CCCCEEETTEEEETTEEECEEEEECTTHHHHHHSTTTTHHHHHHHHHHHHTTCCEEEEESSCSSSSSCSEEETTEECHHH
T ss_pred CCCEEEECCEEEECCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHH
T ss_conf 99679989999999999999999526675011588999999999999998799199979856766765678887546788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 l~~ld~~l~~a~~~Gi~vi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~ 160 (370)
T d1rh9a1 81 FQGLDFVISEAKKYGIHLIMSLVNNWDAFGGKKQYVEWAVQRGQKLTSDDDFFTNPMVKGFYKNNVKVVLTRVNTITKVA 160 (370)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCBSSSSSSBHHHHHHHHHHTTCCCCCGGGGGTCHHHHHHHHHHHHHHHHCBCTTTCSB
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999986999999624443212687555410025777677521124899999999999999998641666765
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~v~~~~l~NEp~~~~~~~~~~~~~~~~~~~~~ir~~dp~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (370)
T d1rh9a1 161 YKDDPTILSWELINEPRCPSDLSGKTFQNWVLEMAGYLKSIDSNHLLEIGLEGFYGNDMRQYNPNSYIFGTNFISNNQVQ 240 (370)
T ss_dssp GGGCTTEEEEESCBSCCCTTCTTSHHHHHHHHHHHHHHHHHCCSSEEECCCCCCCCGGGGGGSGGGCCCSCCHHHHHTST
T ss_pred HCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 16870365300036666677543688999999999999965899749984221456544656777444565110235688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~D~~~~h~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPv~i~EfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (370)
T d1rh9a1 241 GIDFTTIHMYPNQWLPGLTQEAQDKWASQWIQVHIDDSKMLKKPLLIAEFGKSTKTPGYTVAKRDNYFEKIYGTIFNCAK 320 (370)
T ss_dssp TCCCEEEECCHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHHTSCEEEEECCCCTTSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 66088753246765567760245667788999999999757975998453676789988889999999999999999998
Q ss_pred -------------------------------------------------E
Q ss_conf -------------------------------------------------8
Q 001511 467 -------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~G~~~W~~~~~~~~~~~dg~g~~~~d~~~t~~~~~~~~~~~~~~~ 370 (370)
T d1rh9a1 321 SGGPCGGGLFWQVLGQGMSSFDDGYQVVLQESPSTSRVILLQSLRLSKLS 370 (370)
T ss_dssp TTCSEEEEEESCBCCTTCGGGCCSCCBCGGGCHHHHHHHHHHHHHHTTCC
T ss_pred HCCCEEEEEEEEECCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 58980899982154788767799845866897228999999999986249
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=100.00 E-value=0 Score=27866.76 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (370)
T d3coxa1 1 TLADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFG 80 (370)
T ss_dssp CCCTTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBS
T ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98888899799978478999999999878793999967899887654533221113455443334544445544543456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~~~~~~~~~~~~~y~~~e~~lgv~~~~~~~ 160 (370)
T d3coxa1 81 INKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAW 160 (370)
T ss_dssp CCCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 67656535664445578862156420356555015865524897885223556873788999999999750876444776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~a~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~s~~~~~L~~a~~~g~~~i 240 (370)
T d3coxa1 161 FESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTI 240 (370)
T ss_dssp HHHCGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSTTTTCSTTCCSSSBCCGGGTHHHHHHHTTCEEE
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 66788860889999999974986334664345565655444345531224522364443436837877899985898489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~t~~~V~~I~~~~~~~~~V~v~~~~~~~~~~~~~~~~A~~VILaAGai~Tp~LLL~S~~~~~l~~~s~~vG~~~g~~~~~ 320 (370)
T d3coxa1 241 TTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSMKAQGHLPNLSSQVGEGWGVLLNK 320 (370)
T ss_dssp ECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHHHHHHHTTSSTTSCTTTTCCBSSCTTT
T ss_pred EECCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEECCEEEEEECHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCC
T ss_conf 73673899998499718999999588662322899989999995078885999996789897998877667885664575
Q ss_pred -------------------------------------------------E
Q ss_conf -------------------------------------------------8
Q 001511 467 -------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~g~~~~~~~~~~~d~~~~pg~~~~np~~t~~a~a~~~~~~~~~~~~ 370 (370)
T d3coxa1 321 ATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDKIISSDI 370 (370)
T ss_dssp TSCTTSBCTTSTTEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 55666544687774576334366766768205379998878998875029
|
| >d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Lipopolysaccharide core biosynthesis protein RfaG species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27866.34 Aligned_cols=1 Identities=0% Similarity=0.570 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~i~f~~~~y~p~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (370)
T d2iw1a1 1 IVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPA 80 (370)
T ss_dssp CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSCCCTTCEEEECCCCCSSHHHHHHHHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 98999148899998999999999999977997999956787788886389986765544301158899999999986165
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (370)
T d2iw1a1 81 DRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPER 160 (370)
T ss_dssp SEEEESSCCTTCSEEECCSCCHHHHHHHHCCHHHHTSHHHHHHHHHHHHHHSTTCCCEEEESCHHHHHHHHHHHCCCGGG
T ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCCE
T ss_conf 52531036723789987622441046630474200040000067889999742157469982479999999860999642
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 i~vi~~gv~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~gr~~~~Kg~~~li~a~~~l~~~~~~~~~~ii~g~~~~~~ 240 (370)
T d2iw1a1 161 FQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRK 240 (370)
T ss_dssp EEECCCCCCGGGSGGGSCTTHHHHHHHHTTCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCCHH
T ss_pred EEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 89997402222112467656666654304888663699998514554203332011123323322100000112222223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PvI~s~~~g~~e~i~~~~~G~l~~~~ 320 (370)
T d2iw1a1 241 FEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEP 320 (370)
T ss_dssp HHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCHHHHHCCCCCEEEECCC
T ss_conf 22222222222222223323344422233334443222234331133214577039993899718885279836998699
Q ss_pred -------------------------------------------------E
Q ss_conf -------------------------------------------------8
Q 001511 467 -------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~d~~~la~~i~~ll~d~~~~~~~~~~ar~~~~~~~~~~~~~~~~~ii~g~ 370 (370)
T d2iw1a1 321 FSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGG 370 (370)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC
T ss_conf 99999999999997699999999999999999828547999999998485
|
| >d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=27869.16 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 p~p~~~~~i~vEf~SpN~~kplHvGHlRs~iiGd~laril~~~G~~V~r~nyigD~G~Qi~~l~~~~~~~~~~~~~~~~~ 80 (370)
T d1iq0a2 1 PFPRRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKY 80 (370)
T ss_dssp CCCCEEEEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCH
T ss_pred CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 99999986999863899998864311361799999999999769979899847976499999999999856153346544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~y~~~~~~~~~~~~~~~~~e~~~~le~~~~~~~~~~~l~~~~~~l~~l~v~fD~~~~Es~l~~~~~~~~~i~~l 160 (370)
T d1iq0a2 81 DHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALL 160 (370)
T ss_dssp HHHHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECEEEEECCCCCCCCHHHHHHHH
T ss_conf 56644324666542788888899999999987666999999999888865411331101012202322364146667666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~ga~~~d~~~~~~~~~~~~~vl~ksDG~~tY~t~DiAy~~~K~~~~~~~~~~~~~~~~~~~i~i~~ 240 (370)
T d1iq0a2 161 EQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSA 240 (370)
T ss_dssp TTSTTEECCSSSTTTTCEEEECTTTSCSCSCCEEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEE
T ss_pred HHCCCEEECCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCEEECCHHHHHHHHCCCCCCCCEECCCCCCCCEEEEEC
T ss_conf 52361441246665447983374355566674003685267725862079987601033222110024467663267632
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~d~~~~~~~~d~~iyVvd~~Q~~h~~~v~~~~~~~g~~~~~~~~~hv~~g~v~~~g~kMStR~G~~v~l~dll~ea~~~a 320 (370)
T d1iq0a2 241 PEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRA 320 (370)
T ss_dssp EEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHCEEEEEEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHH
T ss_conf 43443202356788887124047999999999981998034111257899983378534356887458999999999999
Q ss_pred -------------------------------------------------E
Q ss_conf -------------------------------------------------8
Q 001511 467 -------------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~r~~~~~~~~~~a~~vgi~avky~~L~~~~~~~~~Fd~d~~lsfe 370 (370)
T d1iq0a2 321 RAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFE 370 (370)
T ss_dssp HHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCSS
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHEEHHHHHCCCCCCCEECHHHHCCCC
T ss_conf 99998508982008999987616632225864589998568789921479
|
| >d1itua_ c.1.9.7 (A:) Renal dipeptidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Renal dipeptidase domain: Renal dipeptidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27797.13 Aligned_cols=1 Identities=0% Similarity=-1.290 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~e~A~~lh~~~pViD~H~D~~~~l~~~~~~~~~~~~~~~~~~~~ghvDlprlr~Ggv~~q~faifv~~~~~~~~~~~ 80 (369)
T d1itua_ 1 DFFRDEAERIMRDSPVIDGHNDLPWQLLDMFNNRLQDERANLTTLAGTHTNIPKLRAGFVGGQFWSVYTPCDTQNKDAVR 80 (369)
T ss_dssp CHHHHHHHHHHTTSCEEEEEECHHHHHHHHHTTCTTSGGGCTTTCCSSSCCHHHHHHTTEEEEEEEECCCGGGTTTTHHH
T ss_pred CHHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCHHHHH
T ss_conf 94789999996489989834328999998733333444344355888865799999669987999998078777759999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~al~~id~~~~~~~~~~d~~~~~~s~~di~~a~~~gkiavil~iEg~~~l~~dl~~L~~~y~lGvR~i~Lt~n~~N~~a~ 160 (369)
T d1itua_ 81 RTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREGKVASLIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWAD 160 (369)
T ss_dssp HHHHHHHHHHHHHHHCTTTEEECCSHHHHHHHHHHTCEEEEEEEECGGGGTTCHHHHHHHHHTTEEEEESCSSSCCSSBC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 99999999999999688768973157899998743672788414345311256799999986495598722687887777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~g~~~~~~~GLt~~G~~~V~emn~lGmiiDlSH~s~~~~~dv~~~s~~PviaSHsn~ral~~h~RNl~De~l~aI 240 (369)
T d1itua_ 161 NWLVDTGDSEPQSQGLSPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLV 240 (369)
T ss_dssp BGGGGGTSSCCSSSSBCHHHHHHHHHHHHHTCEEECTTBCHHHHHHHHHHCSSCCEESSCCBTTTSCCTTSBCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHCCCCHHHHHHH
T ss_conf 75433577876678867678999998641481666487868899988612577456424026654033338998999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 a~~GGviGi~~~~~fl~~~~~~~~~~~~~hi~~~~~l~G~dhVgiGsDfdg~~~~p~gl~~~~~~p~l~~~L~~rG~se~ 320 (369)
T d1itua_ 241 KQTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVGFGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEA 320 (369)
T ss_dssp HHHTCEEEECCCHHHHTSSSCCBHHHHHHHHHHHHHHHCGGGEEECCCTTSCSCCCBTCSSTTCHHHHHHHHHHTTCCHH
T ss_pred HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 96597488850564212330236899999999999870952179865678999998777787788999999998699999
Q ss_pred ------------------------------------------------E
Q ss_conf ------------------------------------------------8
Q 001511 467 ------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~i~ki~g~N~lRv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (369)
T d1itua_ 321 EVKGALADNLLRVFEAVEQASNLTQAPEEEPIPLDQLGGSCRTHYGYSS 369 (369)
T ss_dssp HHHHHHTHHHHHHHHHHHHHCCSSSCCCCCCCCGGGCCSSSCCCTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf 9999998869999999999998613876789984572765441578899
|
| >d1rwha1 a.102.3.2 (A:4-372) Chondroitinase AC {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Chondroitin AC/alginate lyase family: Hyaluronate lyase-like catalytic, N-terminal domain domain: Chondroitinase AC species: Arthrobacter aurescens [TaxId: 43663]
Probab=100.00 E-value=0 Score=27796.71 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~d~~~lr~rw~~~l~g~~~~~~~d~~~~~~l~~l~~~a~~~~~~~~~~~~~~~lW~dl~~~~sa~~~~~~~rl~~mA 80 (369)
T d1rwha1 1 PGAAEFAALRNRWVDQITGRNVIQAGDPDFAKAITALNNKAADSLAKLDAAAGRTSVFTDLSLAKDAEMVTTYTRLSQLA 80 (369)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCCTTCHHHHHHHHHHHHHHHHHHHTBCCCTTCSCSBTTCCTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 96679999999999997488766657878999999999999999997335677666688887886278999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~Ay~~pgs~~y~d~~l~~~I~~al~~l~~~~~~~~~~~~gNWW~~eIg~P~~l~~~liLl~d~l~~~~~~~~~~~i~~f~ 160 (369)
T d1rwha1 81 TAWATPTAAVFGDAAVLAAIKAGLADANTLCYNDRKEEVGNWWSWEIGVPRALADAMVLLHAELSAAERTAYCAAIDHFV 160 (369)
T ss_dssp HHHTSTTSTTTTCHHHHHHHHHHHHHHHHHTSSTTCCCCSCHHHHHTHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 99819999542699999999999999997188789999999101532858999999998502179899999999999866
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 pdp~~~~~~~~~~~~~tGaNrvd~a~~~i~~glL~~d~~~v~~a~~~i~~v~~~vt~gdGf~~DgSf~qH~~~~Y~G~YG 240 (369)
T d1rwha1 161 PDPWLQFPPKRGKITSVGANRVDLCQGIIIRSLAGEDPTKLNHAVAGLSQVWQYVTSGDGIFRDGSFIQHSTTPYTGSYG 240 (369)
T ss_dssp SCTTEESCGGGCCEECCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHGGGGGSCBSSSSEEBTTSCEEETTTEECTTTHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCEECCCCCH
T ss_conf 78643346667752252009999999999999980899999999998641122245897423477636304442166425
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~l~~~~~~~~~l~gT~~~~~~~~~~~l~~~i~~g~~~~i~~g~m~~~v~GR~ISR~~~~~~~~g~~~~~~~~~la~~~ 320 (369)
T d1rwha1 241 VVLLTGLSKLFSLLGGTAFEVSDPTRSIFFDAVEGSFAPVMINGAMADAVRGRSISREANTGYDLGASAIEAILLLARAM 320 (369)
T ss_dssp HHHHHHHHHHHHHHTTSTTCCCCGGGHHHHHHHHHTTGGGEETTEECGGGSGGGGGCTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999999999997799898887899999999995003462577116667887100788776168999999999998519
Q ss_pred ------------------------------------------------E
Q ss_conf ------------------------------------------------8
Q 001511 467 ------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~~~~~vk~~i~~d~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~ 369 (369)
T d1rwha1 321 DPATAARWRGLCAGWIARDTYRPILNSASVPRTALVKQLEATGVAPVAE 369 (369)
T ss_dssp CHHHHHHHHHHHHHHHHTCCSSCTTTTCCHHHHHHHHHHHHHTCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 9999999999999998718765544676522689999986067783889
|
| >d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: HD domain domain: Hypothetical protein aq 1910 species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=0 Score=27794.36 Aligned_cols=1 Identities=100% Similarity=1.998 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~k~~~D~i~g~i~~~~~~~rii~s~~fqRL~~~~Ql~~~~~v~p~a~htR~~HSLgV~~lar~l~~~l~~~~~~~v~~A 80 (369)
T d2heka1 1 MIKEFSDPLYGFVRVGEAGLRLIDSFPFQRLRYVKQLGLAYLVFPSAQHTRFEHSLGVYHITERICESLKVKEKELVKLA 80 (369)
T ss_dssp CEEEEEETTTEEEEEEHHHHHHHTSHHHHGGGGSBTTTTGGGTSTTCCCBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHH
T ss_pred CCEEEECCCCCCEECCHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 95377359988886488999982997670345773478552338999566211998999999999999743328899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~LlHDiGh~PFsH~gE~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~d~ 160 (369)
T d2heka1 81 GLLHDLGHPPFSHTTEVLLPRERSHEDFTERVIKETEIYEILKQDYSHEDIERLVRITLGKPEDEEEKLLSEIITGEFGS 160 (369)
T ss_dssp HHTTTTTCCSSSSCHHHHSTTSSSCCCHHHHHHHHSHHHHHHHTTSCHHHHHHHHHHHHTCCSSHHHHHHHHHHHSTTCH
T ss_pred HHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCHH
T ss_conf 99860265022204666620345520468998740179999998521236999999863246675204588775265101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 Drldyl~rd~~~~~~~~g~~~~~~l~~~~~~~~~~l~~~~~~~~~~e~~~~~R~~m~~~vy~h~~~~~~~~~l~~~~~~~ 240 (369)
T d2heka1 161 DRMDYLRRDAYFCGVSYGFFDYDRLISTLRVYENKVVVDESGLRALENFLISRYFMYVQVYFHKVVRILSIHLVEFLKKL 240 (369)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCCHHHHHTEEEETTEEEEEGGGHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 03433344465506767730199998877653400013563499999999999999899955478899999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~d~~~~~~l~D~~i~~~L~~~~~~~~~~~~i~~R~l~K~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 320 (369)
T d2heka1 241 ISQEDFTDINNFLRLNDAFVISELFKRKAFREDFERIFQRKHFKTLLSTENYEKFSETKERLLEKFPQEKVRFDEVEKEV 320 (369)
T ss_dssp TSSCCCSSTHHHHTCCHHHHHHHHHHCSTTHHHHHHHHSSCCCEEEEEESCHHHHHHHHHHHHHHSCGGGEEEEEEEECS
T ss_pred HHCCCCCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 86589788999973369999999985802519999998340252020167788899999999987442144401343445
Q ss_pred ------------------------------------------------E
Q ss_conf ------------------------------------------------8
Q 001511 467 ------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~i~i~~~~~l~~l~~~S~lv~~L~~~~~~riy~~~~v~e~~~~~~~ 369 (369)
T d2heka1 321 YGGNIYVLSSEGLKKAHELSPLIASLKPIKLYRIYVDRQLWEKARSELK 369 (369)
T ss_dssp CCSCCEEEETTEEEEHHHHCHHHHHCCCEEEEEEEECTTTHHHHHHTTC
T ss_pred CCCCEEEECCCCEEEHHHHCHHHHHHHHHHHEEEECCHHHHHHHHHHHC
T ss_conf 6777489639855583563699998688666378889999999998629
|
| >d2ewoa1 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Porphyromonas-type peptidylarginine deiminase domain: Agmatine iminohydrolase species: Streptococcus mutans [TaxId: 1309]
Probab=100.00 E-value=0 Score=27793.56 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~tp~~~g~rmPaEwep~~~~~l~wP~~~~~w~~~~~~~~~~~~~i~~~ia~~e~V~~~v~~~~~~~a~~~~~~~ 80 (369)
T d2ewoa1 1 AKRIKNTTPKQDGFRMPGEFEKQKQIWMLWPWRNDNWRLGAKPAQKAFLEVAEAISEFEPVSLCVPPLQYENALARVSEL 80 (369)
T ss_dssp CCEECSSCHHHHTCCCCCTTSCEEEEEECCCCCTTTSSGGGHHHHHHHHHHHHHHHTTSCEEEEECGGGHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHC
T ss_conf 98567899301387878872416069998789986303578999999999999985898699998938999999998536
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~i~~~~~~~dD~W~RD~GP~~v~~~~g~~~~vdf~FN~wG~k~~~~~~~~~~d~~~~~~ia~~~~~~~~~~~~lvlE 160 (369)
T d2ewoa1 81 GSHNIRIIEMTNDDAWIRDCGPTFLVNDKGDLRAVDWEFNAWGGLVDGLYFPWDQDALVARKVCEIEGVDSYKTKDFVLE 160 (369)
T ss_dssp TCCSEEEEECCCSSCCTTTSSCEEEECSSSCEEEEEEECCTTTTTTTCSSSCCTTHHHHHHHHHHTTTCCEEEEEEEECC
T ss_pred CCCCEEEEEECCCCHHHHCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEC
T ss_conf 77777999924797566134645898588988998533367765445545522457799999998736543466354875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 GG~ie~dG~GtlltT~~cll~~nRNp~~s~~~ie~~L~~~LGv~~viwL~~g~~~DdTdGHID~~arFi~~~tvl~~~~~ 240 (369)
T d2ewoa1 161 GGSIHVDGEGTVLVTEMCLLHPSRNPHLTKEDIEDKLKDYLNCVKVLWVKDGIDPYETNGHIDDVACFIRPGEVACIYTD 240 (369)
T ss_dssp GGGEEEETTTEEEEEHHHHTSTTSCTTSCHHHHHHHHHHHHCCSEEEEECCCSCTTTTSSCSTTTEEEEETTEEEEBCCC
T ss_pred CCCEEECCCCCEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEECC
T ss_conf 89789889985896445621667899989999999999985994799844766666667773206997289849997148
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 d~~~~~y~~~~~~~~~L~~~~d~~G~~~~i~~lp~p~~~~~~~~~~~~~~~~~~~~~~~g~~l~aSY~Nfli~N~~VivP 320 (369)
T d2ewoa1 241 DKEHPFYQEAKAAYDFLSQQTDAKGRPLKVHKMCVTKEPCYLQEAATIDYVEGSIPREEGEMAIASYLNFLIVNGGIILP 320 (369)
T ss_dssp CTTSTTHHHHHHHHHHHHTCBCSSSCBCEECCBCBCSSCEECCCGGGSCCCCC-------CEECCBTTCCEEETTEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEE
T ss_conf 87786579999999999987875699753885368975443333455444467664568988654236789999999990
Q ss_pred ------------------------------------------------E
Q ss_conf ------------------------------------------------8
Q 001511 467 ------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~yg~~~D~~Al~~l~~~fP~r~Vv~i~~~~l~~~gG~iHCiT~q~Pa~~ 369 (369)
T d2ewoa1 321 QYGDENDQLAKQQVQEMFPDRKVVGVRTEEIAYGGGNIHCITQQQPATL 369 (369)
T ss_dssp CCSCTTHHHHHHHHHHHSTTSEEEEECTHHHHTTSCCTTTTCEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCCEECCCCCCCCC
T ss_conf 1798678999999998888997999844698864975247164536899
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=100.00 E-value=0 Score=27791.27 Aligned_cols=1 Identities=0% Similarity=-1.490 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~g~~P~~l~~~y~~~~~~tG~gvtVaIid~G~~~~~~~Dl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 80 (369)
T d1ga6a_ 1 AGTAKGHNPTEFPTIYDASSAPTAANTTVGIITIGGVSQTLQDLQQFTSANGLASVNTQTIQTGSSNGDYSDDQQGQGEW 80 (369)
T ss_dssp CCBCCCBCGGGHHHHTTCTTSCCEEEEEEEEEEESBCHHHHHHHHHHHHHTTCCCCCEEEEECSCTTSCCCBCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCEEE
T ss_conf 98887749899999739998889887489999617865678899999986599989977651799888888887721133
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~ld~~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~~~~~~~~~~~a~~~a~~~G 160 (369)
T d1ga6a_ 81 DLDSQSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQG 160 (369)
T ss_dssp HHHHHHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 24500001015686499999957999865699999999999758986244244322457886168999999999999789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 i~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggg~s~~~ 240 (369)
T d1ga6a_ 161 QTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLYTTSAGAYSNETVWNEGLDSNGKLWATGGGYSVYE 240 (369)
T ss_dssp CEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEEECTTSCEEEEEECEEEECTTSCEEECCCEEEEEE
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 78998179876557678898766543434665688402333100135777765442021356787755335789866656
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~P~~~~~~~~~~~~r~~pdv~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~vAGvvALi~~a~~~~~G~~n~~ly~~~~~ 320 (369)
T d1ga6a_ 241 SKPSWQSVVSGTPGRRLLPDISFDAAQGTGALIYNYGQLQQIGGTSLASPIFVGLWARLQSANSNSLGFPAASFYSAISS 320 (369)
T ss_dssp ECCGGGGGSTTSCSEEEECSEEEECCGGGCEEEEETTEEEEECSHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCEECCEECCCCCCCCEEEECCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 67543334422578852201102467875048726854666578753113899999999863567668768899998864
Q ss_pred ------------------------------------------------E
Q ss_conf ------------------------------------------------8
Q 001511 467 ------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~~di~~g~n~~~~~~~~a~~G~d~~tG~G~~d~~~l~~~~~s~~~ 369 (369)
T d1ga6a_ 321 TPSLVHDVKSGNNGYGGYGYNAGTGWDYPTGWGSLDIAKLSAYIRSNGF 369 (369)
T ss_dssp CGGGEECCCSCBSSSTTCSCBCCSSSBTTTBTCEECHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHHHCCC
T ss_conf 7665204445888888887678678988956724379999999986699
|
| >d1laxa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: D-maltodextrin-binding protein, MBP species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27790.95 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 k~~eg~ltvW~~~~~~~~~~~~~~~~fe~~~gv~V~v~~~~~~~~kl~~~~~~g~~pDv~~~~~~~~~~~~~~g~l~~L~ 80 (369)
T d1laxa_ 1 KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTDPKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEIT 80 (369)
T ss_dssp CCCTTSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHTTTCSCSEEEEEGGGHHHHHHTTCBCCCC
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCC
T ss_conf 98630899996798316999999999865219879999688799999999866999869998908899999879967588
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~dG~~ygiP~~~~~~~~~ynkd~~~~~p~Tw~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (369)
T d1laxa_ 81 PDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPL 160 (369)
T ss_dssp CCHHHHTTBCHHHHHHTEETTEECSEEEEEECCEEEEETTTCSSCCSBGGGHHHHHHHHHTTTCEEECCCCSSGGGTHHH
T ss_pred HHHHHHHHHHHHHHHHCEECCEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 44533455468898653489999897510220135775000112110057899876442037875632577764004899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~ 240 (369)
T d1laxa_ 161 IAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV 240 (369)
T ss_dssp HHHTTCEEEEECSSCEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTC
T ss_pred HHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEEEEECCHHHHHHHHCCCC
T ss_conf 98717720002355544454455778999999999998752764444552677765515775687416577540011245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~p~~~~~~~~~~~~~~~~~i~~~s~~~~~A~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (369)
T d1laxa_ 241 NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAAT 320 (369)
T ss_dssp CEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHHHHHHHHHHTTSSHHHHHHHHHHSCCCEESBHHHHHHHTTSHHHHHH
T ss_pred CCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHH
T ss_conf 61376314555677655556435664057855899999999864899999999973898865133200444439489999
Q ss_pred ------------------------------------------------E
Q ss_conf ------------------------------------------------8
Q 001511 467 ------------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~s~~eal~~~~~~it 369 (369)
T d1laxa_ 321 MENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTRIT 369 (369)
T ss_dssp HHHHHHSEECCCSTTHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf 9999608007888568999999999999998399999999999998519
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=27717.62 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~k~ltfdDVlLvP~~sti~srdVdls~~~~~~~~l~iPIiss~MDtV~~~~mA~~la~~Gglgvlhr~~~~ 80 (368)
T d2cu0a1 1 KFVEKLEKAIKGYTFDDVLLIPQATEVEPKDVDVSTRITPNVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIHRNMGI 80 (368)
T ss_dssp CHHHHHHTCCCCCCGGGEEECCCCCSSCSTTCBCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSSCH
T ss_pred CHHHHHHHHHHCCCCCCEEEECCCCCCCHHHCEEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCH
T ss_conf 96788998876288000898589776766563653796188314889895798776888999999978996575064898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 e~~~~~v~~v~~~e~~~~~~~d~~~~~~v~~~~~~~~~~r~~~l~~aGvd~ivID~A~Gh~~~~i~~lK~ir~~~~~~vI 160 (368)
T d2cu0a1 81 EEQVEQVKRVKRAEKYKNAVRDENGELLVAAAVSPFDIKRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKVDADFI 160 (368)
T ss_dssp HHHHHHHHHHHTCCCCTTCCBCTTSCBCCEEEECTTCHHHHHHHHHTTCSEEEEECSCCCCHHHHHHHHHHHHTCCSEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 99999887433444324101366763799932572778999999983998798437542012456666554121043132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 aGNVaT~e~~~~l~gaD~VkVGIG~Gs~CTTr~~tGvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla~GAd 240 (368)
T d2cu0a1 161 VGNIANPKAVDDLTFADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGAD 240 (368)
T ss_dssp EEEECCHHHHTTCTTSSEEEECSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCS
T ss_pred ECCCCCHHHHHHHHCCCCEEECCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHEEEEECCC
T ss_conf 21136799997652276214445675555332112423434789999999875249706845887867721135664132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~VMlG~~lAg~~Espg~~~~~~g~~~k~~~Gm~S~~a~~~~~~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~l~~l~ 320 (368)
T d2cu0a1 241 AVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGYMKTRKFVPEGVEGVVPYRGTVSEVLYQLV 320 (368)
T ss_dssp EEEESTTTTTBTTCCSCEEEETTEEEEEEECTTSHHHHTC----------CCCCSCSSCCBCEEEEECCBCHHHHHHHHH
T ss_pred EEECCCHHCCCCCCCCCEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 35305311142235773671599270135676642211357752223555333444378832885078888899999999
Q ss_pred -----------------------------------------------E
Q ss_conf -----------------------------------------------8
Q 001511 467 -----------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------~ 467 (1064)
.
T Consensus 321 gglrs~m~y~G~~~l~e~~~~~~f~~vt~a~~~E~~~h~~~~~~~~~~ 368 (368)
T d2cu0a1 321 GGLKAGMGYVGARNIRELKEKGEFVIITHAGIKESHPHDIIITNEAPN 368 (368)
T ss_dssp HHHHHHHHHTTCSBHHHHHHHCCEEECCHHHHHHHSCCSSCCSCCCCC
T ss_pred HHHHHHHHHCCCCCHHHHHHCCEEEEECCCCCCCCCCCCEEEECCCCC
T ss_conf 999999876286509998509789999954142467877366356899
|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin motor Ncd (non-claret disjunctional) species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=0 Score=27716.87 Aligned_cols=1 Identities=100% Similarity=0.404 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gnIkV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~ 80 (368)
T d2ncda_ 1 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQS 80 (368)
T ss_dssp CCSSSGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCGGGTTSCBCEEEEETTTEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHCCCCCCEEEECCCCEEEECC
T ss_conf 91589999999999999999999999999999999874899756997999990789901027898579957998699706
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~v~plv~~vl~G~n~ti~aYGqtGSGKT~Tm~G~~~~~Giipr~~~~Lf 160 (368)
T d2ncda_ 81 IDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLF 160 (368)
T ss_dssp SCHHHHTTTCCCEEECSEEECTTCCHHHHHTTTHHHHHHHHTTCEEEEEEECSTTSSHHHHHTEETTEECHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEECCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHH
T ss_conf 88655677686466778587999986214999998898775036513773115787560671366644344667999876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~~~~~~~~d~~~~~~v~g~~~~~v~~~~~~~~~l~~g~~~r~~~ 240 (368)
T d2ncda_ 161 DSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATA 240 (368)
T ss_dssp HHHHHHHTTSCEEEEEEEEEEESSSCEEETTCSSCCCCCEEECTTCTTCEEETTCCCEEECSHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHCCCCCCCEEEEEEEEEECCEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 45443202455526899999886560201256421354311302666442334430220477788999999987511244
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~t~~n~~ssrSh~i~~i~v~~~~~~~~~~~~s~l~~VDLAGse~~~~~~~~~E~~~IN~SL~aL~~vi~aL~~~~~~iPy 320 (368)
T d2ncda_ 241 STAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPY 320 (368)
T ss_dssp SSSCTTTTTTCEEEEEEEEEEECTTSCCEEEEEEEEEECCCCCCC----------CTTHHHHHHHHHHHHHHTTCSCCCG
T ss_pred CCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 22146545554327899999976698856765444422010233102321024552026499999999998658998997
Q ss_pred -----------------------------------------------E
Q ss_conf -----------------------------------------------8
Q 001511 467 -----------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------~ 467 (1064)
.
T Consensus 321 R~SkLT~lL~dsLggns~t~mI~~isp~~~~~~eTl~TL~fa~rak~~ 368 (368)
T d2ncda_ 321 RNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSC 368 (368)
T ss_dssp GGSHHHHHHGGGSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 578889998985599870999999798735499999999999997569
|
| >d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Glutamine synthetase/guanido kinase superfamily: Glutamine synthetase/guanido kinase family: Glutamate-cysteine ligase family 2 (GCS2) domain: Carboxylate-amine ligase YbdK species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27715.82 Aligned_cols=1 Identities=100% Similarity=1.201 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
|
T Consensus 1 ~~~f~~~~~~tiGvE~E~~lvd~~~~~~~~~~~~ll~~~~~~~~~~~i~~El~~~qiEl~t~p~~~~~e~~~~l~~~~~~ 80 (368)
T d1r8ga_ 1 LPDFHVSEPFTLGIELEMQVVNPPGYDLSQDSSMLIDAVKNKITAGEVKHDITESMLELATDVCRDINQAAGQFSAMQKV 80 (368)
T ss_dssp CCCCCCCCTTCEEEEEEEEEEETTTTEECSCCHHHHTTTSSSCSSSEEEECSSSSEEEEECCSBSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999983489876543679987667757999997222246886310467766998077779999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~g~~P~~~~~~~~~~~~~ry~~~~~~~~~~~~~~~~~g~hv~~~~~d~~~~~~~~~~~~~~~p~l~ 160 (368)
T d1r8ga_ 81 VLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFGYLIQQATVFGQHVHVGCASGDDAIYLLHGLSRFVPHFI 160 (368)
T ss_dssp HHHHHHHTTCEEECCSBCSSCCC----------------CCGGGGCSCCBCEEEEEEECSSHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99987655875244575212672215577508999998742707888764256031168999999999999999868998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 aL~anSP~~~G~~tg~~s~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vRp~~~~~~iEiR~~D 240 (368)
T d1r8ga_ 161 ALSAASPYMQGTDTRFASSRPNIFSAFPDNGPMPWVSNWQQFEALFRCLSYTTMIDSIKDLHWDIRPSPHFGTVEVRVMD 240 (368)
T ss_dssp HHHCCBCEETTEECSCSBCGGGGGTTSTTCSSCCCCSSHHHHHHHHHHHTTSSSCSSGGGCCCSEEEETTTTEEEEEEEE
T ss_pred HHHCCCHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 88528663358677886775267750876565430001120799999998556445677056316876466742124789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~p~~~~~~~~aa~~~~l~~~l~~~~~~~~~~~~~~~~~~n~~~aar~Gl~~~l~~~~~~~~~~~~~~~~~Ll~~~~~~l 320 (368)
T d1r8ga_ 241 TPLTLSHAVNMAGLIQATAHWLLTERPFKHQEKDYLLYKFNRFQACRYGLEGVITDPHTGDRRPLTEDTLRLLEKIAPSA 320 (368)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHCCCCCCGGGGTTHHHHHHHHHHHGGGSEEECTTTCCEEEHHHHHHHHHHHSHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHH
T ss_conf 99988999997568887888998617877640448999999998876144411000689967689999999999999999
Q ss_pred -----------------------------------------------E
Q ss_conf -----------------------------------------------8
Q 001511 467 -----------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~lg~~~~l~~l~~~v~~g~t~A~~lr~~~~~~gsl~~~v~~~~e~~~ 368 (368)
T d1r8ga_ 321 HKIGASSAIEALHRQVVSGLNEAQLMRDFVADGGSLIGLVKKHCEIWA 368 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHTTCCHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 978898999999999982999999999999818999999999998739
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=0 Score=27714.53 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~g~a~~~~a~~~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~ 80 (368)
T d1mdah_ 1 EKSKVAGSAAAASAAAASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFA 80 (368)
T ss_dssp CCCCCCSHHHHHHHTTCCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEE
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCCEECCCCCEEE
T ss_conf 94121200000123445679866645589876126972045788621799708998377888578777513989998899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~ 160 (368)
T d1mdah_ 81 LASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQ 160 (368)
T ss_dssp EEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEE
T ss_pred EECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEE
T ss_conf 97556764010356786999989999383064378542102468864058878998999996899859999899893867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~ 240 (368)
T d1mdah_ 161 LTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPA 240 (368)
T ss_dssp EEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCS
T ss_pred EEECCCCCEECCCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCEEEEEECC
T ss_conf 86046752374699823999948998899982689626665303111356664660101558689993489779996069
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a 320 (368)
T d1mdah_ 241 AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAII 320 (368)
T ss_dssp SCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEE
T ss_pred CCEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEECCCCCEEEEE
T ss_conf 93699760246543045540127883568871799879998358973340588649999899994868955899651799
Q ss_pred -----------------------------------------------E
Q ss_conf -----------------------------------------------8
Q 001511 467 -----------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------~ 467 (1064)
-
T Consensus 321 ~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~~~~a 368 (368)
T d1mdah_ 321 AAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQNEA 368 (368)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCCCC
T ss_pred ECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEECCC
T ss_conf 998999899999489996999989999799998799998789973489
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=27712.70 Aligned_cols=1 Identities=0% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~la~~~~~I~ls~g~p~~~~p~~i~~al~~~l~~~~~Y~~~~G~~elr~aiA~~~~~~~~~ 80 (368)
T d1v2da_ 1 MRLHPRTEAAKESIFPRMSGLAQRLGAVNLGQGFPSNPPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEEFAVEPES 80 (368)
T ss_dssp CCCCGGGGGC---CHHHHHHHHHHHTCEECCCCSCSSCCCHHHHHHHHHHTTTSCSCCCTTCCHHHHHHHHHHHTSCGGG
T ss_pred CCCCHHHHHCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 97782345467879999999864399889459889998899999999998602568899867899999997525557741
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~ 160 (368)
T d1v2da_ 81 VVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNT 160 (368)
T ss_dssp EEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEES
T ss_pred EEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHCCCCEEEEECC
T ss_conf 26515307888777650444456532358850134567875177320001354345444788999975335765999769
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~ 240 (368)
T d1v2da_ 161 PMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEF 240 (368)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98866666999999999999998498265223333220333333222223344503641455323454322211144223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p~g~~~~~~~l~~~~~~ 320 (368)
T d1v2da_ 241 MPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGWDAF 320 (368)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECTTCCHH
T ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCHHH
T ss_conf 32002221012332233333222222333221025788999999865322456876694786688306999968950899
Q ss_pred -----------------------------------------------E
Q ss_conf -----------------------------------------------8
Q 001511 467 -----------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------~ 467 (1064)
-
T Consensus 321 ~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 321 RLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVV 368 (368)
T ss_dssp HHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCEEEEECHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 999969999996233078999899899996499999999999999869
|
| >d1pyya4 e.3.1.1 (A:264-631) Penicillin-binding protein 2x (pbp-2x), transpeptidase domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: Penicillin-binding protein 2x (pbp-2x), transpeptidase domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=0 Score=27712.98 Aligned_cols=1 Identities=0% Similarity=-0.393 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 Tid~~lQ~~~e~~l~~~~~~~~~~~~~~vv~d~~TG~IlAmas~P~~dpn~~~~~~~~~~~~n~a~~~~~~PGStfKp~~ 80 (368)
T d1pyya4 1 TISSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTGEILATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSAFKVMM 80 (368)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCCSEEEEEEEETTTTEEEEEEEESCCCTTTCTTCCTTCCCCCHHHHCCBCCGGGGHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 93979999999999999997089569999999999939999967988854236766103443265517668863054699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~aaaLe~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vtl~~al~~S~N~~~~~l~~~lg~~~~~~~~~~~G~~~ 160 (368)
T d1pyya4 81 LAAAIDNNTFPGGEVFNSSELKIADATIRDWDVNEGLTGGRMMTFSQGFAHSSNVGMTLLEQKMGDATWLDYLNRFKFGV 160 (368)
T ss_dssp HHHHHHTTCCCTTCEEECCCEEETTEEECCEETTTEECCSCEEEHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHTTTTS
T ss_pred HHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 99864023332222222101102444432345544334880456999997532454143210358244789998753487
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~e~~g~~p~~~~~~~~~~~~G~~~~~tplq~a~aya~iANgG~~~~P~~i~~i~d~~g~~~~~~~~~~~~~~i 240 (368)
T d1pyya4 161 PTRFGLTDEYAGQLPADNIVNIAQSSFGQGISVTQTQMIRAFTAIANDGVMLEPKFISAIYDPNDQTARKSQKEIVGNPV 240 (368)
T ss_dssp CCCCSCSSCCCCBCCCSSHHHHHHGGGTCSCBBCHHHHHHHHHHHHTTTCEECCBCEEEEEEGGGTEEEECCCCEEECCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEECCCCCCCCCCCC
T ss_conf 42245433233467643320000222346655107888867789854876205579888866876410134432344443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~m~~~v~~~~~~~~~~~gtg~~~~~~~g~~vaGKTGTaq~~~~~~~~~~~~~~~~~~~fvg~~P~~~P~~ 320 (368)
T d1pyya4 241 SKDAASLTRTNMVLVGTDPVYGTMYNHSTGKPTVTVPGQNVALKSGTAQIADEKNGGYLVGLTDYIFSAVSMSPAENPDF 320 (368)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCTTEETTTTEESSCCTTSCCEEEEEEEECBCSSSSSBCCSTTCEEEEEEEEESSSSCSE
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCE
T ss_conf 27899999999987531145542676046531213799506678822201477788501366565699999957589959
Q ss_pred -----------------------------------------------E
Q ss_conf -----------------------------------------------8
Q 001511 467 -----------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------~ 467 (1064)
.
T Consensus 321 ai~V~v~~p~~~~g~~gg~vAapi~~~i~~~~~~l~~~~~~~~~~~~~ 368 (368)
T d1pyya4 321 ILYVTVQQPEHYSGIQLGEFANPILERASAMKDSLNLQTTAKALEQVS 368 (368)
T ss_dssp EEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTGGGCTTSCCSTTTTCC
T ss_pred EEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 999999778867887306899999999999997743589999724489
|
| >d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Glutamine synthetase/guanido kinase superfamily: Glutamine synthetase/guanido kinase family: Glutamine synthetase catalytic domain domain: Glutamine synthetase, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=27715.02 Aligned_cols=1 Identities=0% Similarity=-1.888 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~dPR~iLkr~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (368)
T d1f52a2 1 DRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF 80 (368)
T ss_dssp TTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCCCCCCCTTCCSS
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEECEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 98879999999999997699870378854288999421035576777565577322456887666887787655577615
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~~~E~~~~gq~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~Gl~atFmpKP~ 160 (368)
T d1f52a2 81 PVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPM 160 (368)
T ss_dssp BCTTSSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSCSS
T ss_pred EEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCC
T ss_conf 53001107889999999888622570564223456784322078786577889999999999999997436334741568
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~GsG~HiH~Sl~~~~~n~~~~~~~~~lS~~~~~fiaGll~~~~~~~al~~PtvNSYkRl~~~~~aP~~~~Wg~~NR~ 240 (368)
T d1f52a2 161 FGDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRS 240 (368)
T ss_dssp TTSCCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHHHHTHHHHHHHHSCSGGGGGTSSSCSSCCCEEEEESSCTT
T ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEECCCCCC
T ss_conf 89877532589874159985656555556489999999999986699899977996077652477768743452367655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 a~iRi~~~~~~~~~riE~R~~da~aNPYL~lAa~laagl~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~lP~sl~eAl~a 320 (368)
T d1f52a2 241 ASIRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDLPPEEAKEIPQVAGSLEEALNA 320 (368)
T ss_dssp EEEECCCCSCGGGCCEEECCCCTTSCHHHHHHHHHHHHHHHHHTTCCCCSCCCSCCSSSCCSSTTCCCBCCSSHHHHHHH
T ss_pred CCEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHCHHCCCCCHHHHHHH
T ss_conf 31464025788662478447880177789999999976542421589999777872448976762320151379999999
Q ss_pred -----------------------------------------------E
Q ss_conf -----------------------------------------------8
Q 001511 467 -----------------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------------~ 467 (1064)
-
T Consensus 321 l~~d~~~~~a~~~lGe~~v~~y~~~K~~E~~~~~~~vt~wE~~~Yl~~ 368 (368)
T d1f52a2 321 LDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYSV 368 (368)
T ss_dssp HHHTCHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHTTC
T ss_pred HHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 964978788765156999999999999999999679999999741689
|
| >d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Alpha-L-arabinofuranosidase, catalytic domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=27637.95 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~i~~~i~g~f~E~lg~~i~~g~~~~~~~~~~~~G~R~dv~~~l~~l~~~~lR~PGG~~~~~y~W~~~iGp~~~Rp~~~~~ 80 (367)
T d1qw9a2 1 EIDKRIYGSFIEHLGRAVYGGIYEPGHPQADENGFRQDVIELVKELQVPIIRYPGGNFVSGYNWEDGVGPKEQRPRRLDL 80 (367)
T ss_dssp ECCGGGGEEECCSSTTSTBTTTBCTTCTTBCTTSBBHHHHHHHHHHTCCEEEESCSGGGGGCCGGGGSSCGGGCCCEEET
T ss_pred CCCHHHCCCHHHHCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf 98824424406543573207664799998887665999999999639987865886136705212365986778886588
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~w~~~~~~~~G~~Ef~~~~~~~gaep~~~vn~g~~~~~~a~d~vey~n~~~~t~~~~~R~~~G~~~P~~v~yweIGNE~~ 160 (367)
T d1qw9a2 81 AWKSVETNEIGLNEFMDWAKMVGAEVNMAVNLGTRGIDAARNLVEYCNHPSGSYYSDLRIAHGYKEPHKIKTWCLGNAMD 160 (367)
T ss_dssp TTTEEECCSSCHHHHHHHHHHHTCEEEEEECCSSCCHHHHHHHHHHHHCCSSSHHHHHHHHTTCCSCCCCCEEEESSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCC
T ss_conf 88876767777899999999809838999837974099999999997068988889999871887888732899635111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 g~~~~g~~~~~~Y~~~~~~f~~amk~~dP~i~lia~g~~~~~~~~~~~w~~~vl~~~~~~iD~is~H~Y~~~~~~~~~~~ 240 (367)
T d1qw9a2 161 GPWQIGHKTAVEYGRIACEAAKVMKWVDPTIELVVCGSSNRNMPTFAEWEATVLDHTYDHVDYISLHQYYGNRDNDTANY 240 (367)
T ss_dssp STTSTTCCCHHHHHHHHHHHHHHHHHHCTTCEEEECCCSCTTSTTTTHHHHHHHHHHGGGCSEEEEEEEECCTTCCHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 56555788999999999999998760299836999868877776555289999861311577022347778875512455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~iavdEwn~wy~~~~~~~~~~~~~~~~~~l~~~~tl~~AL~~A~~L~~~ 320 (367)
T d1qw9a2 241 LALSLEMDDFIRSVVAIADYVKAKKRSKKTIHLSFDEWNVWYHSNEADKLIEPWTVAPPLLEDIYNFEDALLVGCMLITL 320 (367)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHTCSCCCEEEEEEEEECCTTHHHHTTCCTTBSSCCTTCCCCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 55677799999999999999874046778851886224564454555555554233755312237699999999999999
Q ss_pred ----------------------------------------------E
Q ss_conf ----------------------------------------------8
Q 001511 467 ----------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------~ 467 (1064)
.
T Consensus 321 ~R~sD~V~mA~~A~lvNvl~~i~~~~~~~~~~~~~y~v~~~~s~~~r 367 (367)
T d1qw9a2 321 MKHADRVKIACLAQLVNVIAPIMTEKNGPAWKQTIYYPFMHASVYGR 367 (367)
T ss_dssp HHTTTTEEEEEEECSBSSSCSEEECTTSCEEECTTHHHHHHHHHHCC
T ss_pred HHCCCEEEEEEHHHHHHHHCCEEECCCCCEEECCCHHHHHHHHHHCC
T ss_conf 97259556540337664102148659998610751199999998529
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=100.00 E-value=0 Score=27637.93 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
T d1n4wa1 1 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRN 80 (367)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCB
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 95709996769899999999977959199991689988766565422222344544333334433543321235677766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~~~~~~~~l~pyy~~ae~~l~~~~~~~~~~~~~ 160 (367)
T d1n4wa1 81 IDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDT 160 (367)
T ss_dssp CCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCEECCEEECCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 66566740223688652135776378873224360006866742232245738899999999998829877888866667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~k~s~~~~yl~~a~~~gn~~i~~~t 240 (367)
T d1n4wa1 161 EWYKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLH 240 (367)
T ss_dssp GGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCSTTCCSSSBCCTTTTHHHHHHHTTSEEEEESE
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCC
T ss_conf 78728899999998738642235323224875555655567631246433445654467667623789758980998787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAGai~Tp~LLl~S~~~g~l~~~s~~lG~~~~~~l~~~~~~ 320 (367)
T d1n4wa1 241 QVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRARDTGTLPNLNSEVGAGWGCVLGKATDD 320 (367)
T ss_dssp EEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHHHHHHHTTSSTTCCTTTTCCBSSCTTTTBCT
T ss_pred EEEEEEECCCCCEEEEEEEECCCCCCEEEEEEECCEEEEECCHHCCHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCC
T ss_conf 89998985899889999997777752049998648999906523079999847777999986676667865545644456
Q ss_pred ----------------------------------------------E
Q ss_conf ----------------------------------------------8
Q 001511 467 ----------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------~ 467 (1064)
+
T Consensus 321 ~g~~~~~~~~~~~~g~~i~~~~~~~p~~t~~ala~~~~~~~~~~~~~ 367 (367)
T d1n4wa1 321 YGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQDVT 367 (367)
T ss_dssp TSBBTTCSSEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 66435877730347743568687893340799998799999885459
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27642.31 Aligned_cols=1 Identities=0% Similarity=1.832 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~~~~~~~l~~~~~~e~ah~~~~~~~~~~~~~~~~~~~~~~L~v~~~Gl~~~nPi~lAsG~~~~~~~i~~~~ 80 (367)
T d1d3ga_ 1 MATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVGIAAGFDKHGEAVDGLY 80 (367)
T ss_dssp CCSCCHHHHHHTHHHHHHHHSCHHHHHHHHHHHHHTTCCC---CCCCGGGCEEETTEEESSSEEECTTSSTTSSSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCEECCCCCEECCCCCCCHHHHHHHH
T ss_conf 97770899999999999865898999999999998337553236898777568899866998676848787899999986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~G~G~vv~kTit~~~~~gn~~pr~~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~pv~vsi~~~~~~~ 160 (367)
T d1d3ga_ 81 KMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSV 160 (367)
T ss_dssp HHTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCCCBCCHHHHHHHHHTTHHHHHHHHHTTCCEEEEECCCTTCS
T ss_pred HCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCH
T ss_conf 35874786134246632457760322102111211224767754699998888875411343436863899834654507
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~ad~lelNiScPn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~vKlsP~~~~~~i~~~a 240 (367)
T d1d3ga_ 161 DAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIA 240 (367)
T ss_dssp CHHHHHHHHHHHHGGGCSEEEEESCCTTSTTC----CHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 88888877777765314400245000321122210111101257888887653202245776301247641000134467
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIig~GGI~s~~Da~e~i~aG 320 (367)
T d1d3ga_ 241 SVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAG 320 (367)
T ss_dssp HHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHT
T ss_pred HHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 88876543102113332234454344211244321121110230889999999738995199988979999999999839
Q ss_pred ----------------------------------------------E
Q ss_conf ----------------------------------------------8
Q 001511 467 ----------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------~ 467 (1064)
+
T Consensus 321 As~VQi~Ta~~~~Gp~ii~~I~~~L~~~l~~~G~~si~dl~G~a~~~ 367 (367)
T d1d3ga_ 321 ASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHRR 367 (367)
T ss_dssp CSEEEESHHHHHHCTHHHHHHHHHHHHHHHHTTCSSHHHHTTGGGGC
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCHHCCC
T ss_conf 97887417788239079999999999999984999899962802269
|
| >d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Citrate synthase superfamily: Citrate synthase family: Citrate synthase domain: Citrate synthase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=27642.25 Aligned_cols=1 Identities=0% Similarity=1.101 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~GL~gv~~~eT~IS~id~~~G~L~YRG~~i~dLa~~~sFEEva~LL~~G~LPt~~el~~f~~~L~~~~~lp~~v~~~ 80 (367)
T d1o7xa_ 1 VVSKGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYGSYEETIYLMLYGKLPTKKELNDLKAKLNEEYEVPQEVLDT 80 (367)
T ss_dssp CBCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCCCCCCCEEEEEECEEEECCCCEEEECCEEHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 97977799837588680386898879998874999861599999999997798969999999999999863581999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 i~~~p~~~hpm~~l~~~vsal~~~d~~~~~~~~~~~~a~~l~A~~p~i~a~~~r~~~g~~~~~p~~~~s~~~~~~~~~~~ 160 (367)
T d1o7xa_ 81 IYLMPKEADAIGLLEVGTAALASIDKNFKWKENDKEKAISIIAKMATLVANVYRRKEGNKPRIPEPSDSFAKSFLLASFA 160 (367)
T ss_dssp HHHSCTTSCHHHHHHHHHHHHHHHCCCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCSCHHHHHHHHHHS
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 98601230146788888998765300234321110167789989999999999876489877885034468887654048
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~l~~~lvl~adHg~n~Stfa~r~~aSt~~d~~~~~~aa~~~l~Gplhgga~~~~~~~l~~~~~~~~~~~~~ 240 (367)
T d1o7xa_ 161 REPTTDEINAMDKALILYTDHEVPASTTAALVAASTLSDMYSSLTAALAALKGPLHGGAAEEAFKQFIEIGDPNRVQNWF 240 (367)
T ss_dssp SCCCHHHHHHHHHHHHHHSCCSCCHHHHHHHHHHHTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHCSGGGHHHHH
T ss_pred CCCCHHHHHHHHHHHEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHH
T ss_conf 88506777776567400015788854300001451376422114667776045434673799999999633654237899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~i~GfGH~vy~~~DPR~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~pNvd~~~~~l~~~ 320 (367)
T d1o7xa_ 241 NDKVVNQKNRLMGFGHRVYKTYDPRAKIFKKLALTLIERNADARRYFEIAQKLEELGIKQFSSKGIYPNTDFYSGIVFYA 320 (367)
T ss_dssp HHHTTTTCCCCTTBCCSSCSSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTTTCCBCTTTTHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99986147754167875343566228999999999865046512699999999999998534589986838999999998
Q ss_pred ----------------------------------------------E
Q ss_conf ----------------------------------------------8
Q 001511 467 ----------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------~ 467 (1064)
.
T Consensus 321 lG~p~~~~~~lf~~~R~~G~~AH~~Eq~~~~~~l~RP~~~Y~Gp~~~ 367 (367)
T d1o7xa_ 321 LGFPVYMFTALFALSRTLGWLAHIIEYVEEQHRLIRPRALYVGPEYQ 367 (367)
T ss_dssp HTCCGGGHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCEEEECSCSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCC
T ss_conf 09786778899999999999999999985789841866510098999
|
| >d1ursa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: D-maltodextrin-binding protein, MBP species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=100.00 E-value=0 Score=27634.33 Aligned_cols=1 Identities=0% Similarity=-0.891 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 qTIt~w~~~~~~~~~~~~~~~~~F~~~~p~~~v~~~~~~~~~~~~~l~~~~~ag~~pDi~~~~~~~~~~~~~~~g~l~~L 80 (367)
T d1ursa_ 1 QTITVWSWQTGPELQDVKQIAAQWAKAHGDKVIVVDQSSNPKGFQFYATAARTGKGPDVVFGMPHDNNGVFAEEGLMAPV 80 (367)
T ss_dssp CEEEEEESCCHHHHHHHHHHHHHHHHHHCCEEEEEECTTCTTCTTHHHHHHHTTCCCSEEEEEEGGGHHHHHHTTCBCCC
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCC
T ss_conf 97999827884579999999999999879989999848828999999999966999839998582789999987995400
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~dG~~y~iP~~~~~~~l~yNk~~~~~~p~T~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (367)
T d1ursa_ 81 PSGVLNTGLYAPNTIDAIKVNGTMYSVPVSVQVAAIYYNKKLVPQPPQTWAEFVKDANAHGFMYDQANLYFDYAIIGGYG 160 (367)
T ss_dssp CTTSCCGGGSCHHHHHTTEETTEECSEEEEEEECEEEEETTTCSSCCCSHHHHHHHHHHHCEECCTTCHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCHHHHHHCEECCEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 24554411479778854638877876420354158887401023431008999999866303667777521068887541
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~g~~~~~~~~~~~~~~~~ 240 (367)
T d1ursa_ 161 GYVFKDNNGTLDPNNIGLDTPGAVQAYTLMRDMVSKYHWMTPSTNGSIAKAEFLAGKIGMYVSGPWDTADIEKAKIDFGV 240 (367)
T ss_dssp CEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTSCSCCTTCCHHHHHHHHHTTCCSEEEECGGGHHHHHHTTCCEEE
T ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 02211588644543135588889999999999986136564222037788888527741103366665444441156326
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~P~~~~g~~~~~~~~~~~~~i~~~s~~~e~A~~fl~~l~s~e~q~~~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~~~ 320 (367)
T d1ursa_ 241 TPWPTLPNGKHATPFLGVITAFVNKESKTQAADWSLVQALTSAQAQQMYFRDSQQIPALLSVQRSSAVQSSPTFKAFVEQ 320 (367)
T ss_dssp ECCCCCTTSCCCCCEEEEEEEEEBTTCSCHHHHHHHHHHHTSHHHHHHHHHHHCCEESSHHHHTSHHHHTCHHHHHHHHH
T ss_pred EECCCCCCCCCCCEECCCCCCEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHCHHHHHCHHHHHHHHH
T ss_conf 63365788664310005654010210131688999999850699999999971988873767739553209389999999
Q ss_pred ----------------------------------------------E
Q ss_conf ----------------------------------------------8
Q 001511 467 ----------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~~t~~~al~~~~~~i~kg 367 (367)
T d1ursa_ 321 LRYAVPMPNIPQMQAVWQAMSILQNIIAGKVSPEQGAKDFVQNIQKG 367 (367)
T ss_dssp GGGCEECCCSTHHHHHHHHTTHHHHHHHTSSCHHHHHHHHHHHHHC-
T ss_pred HHHCEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 95083178785489999999999999829899999999999998576
|
| >d1b65a_ d.154.1.1 (A:) L-aminopeptidase D-Ala-esterase/amidase DmpA {Ochrobactrum anthropi [TaxId: 529]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DmpA/ArgJ-like superfamily: DmpA/ArgJ-like family: DmpA-like domain: L-aminopeptidase D-Ala-esterase/amidase DmpA species: Ochrobactrum anthropi [TaxId: 529]
Probab=100.00 E-value=0 Score=27638.41 Aligned_cols=1 Identities=0% Similarity=-0.825 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 r~r~R~lGi~~~~~pGp~N~ITDV~GV~VGH~T~~~g~~~~~~~~~~~TGvTvIlp~~g~~~~~~v~ag~~~~~g~~~~~ 80 (367)
T d1b65a_ 1 KPRARDLGLPFTGVTGPYNAITDVDGVGVGFQTIIENEPRPGRKRPARSGVTAILPHMQSETPVPVYAGVHRFNGNGEMT 80 (367)
T ss_dssp CCCGGGGTCCCCSCBCTTSSGGGSTTCEEEEEEEECSSCCTTCSSCCEEEEEEEETTTTCSSCCCEEEEEEEEEESSCBC
T ss_pred CCCHHHCCCCCCCCCCCCCCEECCCCCEECCEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 97567539887888799875014798566223644687654679986711799971899756786055561368876678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~v~e~g~~~~aIvLTggsa~Glaa~~~v~~~l~~~~~g~~~~~~~~vvPiV~~~~D~~l~d~~~~~~~~~~~~~A~~ 160 (367)
T d1b65a_ 81 GTHWIEDGGYFLGPVVITNTHGIGMAHHATVRWMVDRYASTYQTDDFLWIMPVVAETYDGALNDINGFPVTEADVRKALD 160 (367)
T ss_dssp SHHHHHHHCEECSCEEEEEGGGHHHHHHHHHHHHHHHTHHHHSSSSCCCCCCEEEEECCTTTSCGGGCCCCHHHHHHHHH
T ss_pred CHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 05653547753677987567248888789999999856888777885210451279980677876678988999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~A~~~~v~~G~VGAGtGa~~~~~KGGiGtASr~~~~~~~~~tVGaLV~~N~g~~~~~~~~g~p~g~~l~~~~~~~~~~~~ 240 (367)
T d1b65a_ 161 NVASGPVQEGNCGGGTGMITYGFKGGTGTASRVVEFGGRSFTIGALVQANHGQRDWLTIAGVPVGQHMRDGTPQSQLQER 240 (367)
T ss_dssp TCBSSCCCCBSCGGGTTCEETTEECEEEEEEEEEEETTEEEEEEEEEEECCCCGGGCCBTTBCHHHHCCTTCHHHHC---
T ss_pred HHHCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC
T ss_conf 75228877887573211321356787521267887178835999999744788500240775200131445777777889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 nTtI~VVATDApL~~~ql~RlA~~A~~GlARai~p~ht~dGD~vfA~STg~~~~~~~~~~~~~~~~~l~~~~l~~lf~Aa 320 (367)
T d1b65a_ 241 GSIIVVLATDLPLMPHQLKRLARRASIGIGRNGTPGGNNSGDIFIAFSTANQRPMQHRSAPFLDVEMVNDEPLDTVYLAA 320 (367)
T ss_dssp -CEEEEEEECSCCCHHHHHHHHHTHHHHHHTTTCCCCTTCEEEEEEEECCSCCCCGGGSCSEEEEEEECSGGGHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHH
T ss_conf 98899999598189999999999865315312677779984779994057867766556554441004720008899999
Q ss_pred ----------------------------------------------E
Q ss_conf ----------------------------------------------8
Q 001511 467 ----------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------~ 467 (1064)
-
T Consensus 321 aea~eeAI~nal~~A~t~~G~~~~~~~~~alp~d~~~~~~~~~~~l~ 367 (367)
T d1b65a_ 321 VDSVEEAVVNAMIAAEDMGGTPFDRLLVQAIDHERLRAVLRQYGRLA 367 (367)
T ss_dssp HHHHHHHHHHHHHHCCCEECSTTCSCEECCCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCC
T ss_conf 99999999999974677657589987741799999999999846679
|
| >d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase {Cushaw squash (Cucurbita moschata) [TaxId: 3662]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Glycerol-3-phosphate (1)-acyltransferase superfamily: Glycerol-3-phosphate (1)-acyltransferase family: Glycerol-3-phosphate (1)-acyltransferase domain: Glycerol-3-phosphate (1)-acyltransferase species: Cushaw squash (Cucurbita moschata) [TaxId: 3662]
Probab=100.00 E-value=0 Score=27638.38 Aligned_cols=1 Identities=0% Similarity=-1.554 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~~e~~~lp~~~~~~~~~~~~~y~~a~~~s~~~~a~e~~~~~~~~~~~~~~~~~~~p~~ 80 (367)
T d1iuqa_ 1 ASHSRKFLDVRSEEELLSCIKKETEAGKLPPNVAAGMEELYQNYRNAVIESGNPKADEIVLSNMTVALDRILLDVEDPFV 80 (367)
T ss_dssp CCCCCGGGGCCSHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 98641322266589999999999855789857999999999999999973489995089999999999888741478743
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 f~~~h~~~~~~~~~~~~~~~~~~~li~~~~s~v~~~~~l~~~~Ekl~~g~nVIlvSNHqS~~D~~il~~ll~~~~~~l~r 160 (367)
T d1iuqa_ 81 FSSHHKAIREPFDYYIFGQNYIRPLIDFGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAE 160 (367)
T ss_dssp CCSEECCCCSSSCHHHHHHHHHGGGBCGGGCEEECHHHHHHHHHHHHTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHH
T ss_pred CCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 67521000578778999999999986478777815789999999860799779987885400389999998512656210
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~i~f~Ak~~l~~~Pl~~~f~~~~g~I~V~rk~~i~~~p~l~~~~~~~~~~al~~~~~lL~~Gg~~v~IfPEGTRsr~~~~ 240 (367)
T d1iuqa_ 161 NTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPS 240 (367)
T ss_dssp HCEEEECTHHHHCTTTHHHHHTSEEEECCCGGGTTSSGGGHHHHHHHHHHHHHHHHHHHHHCCCEEEECTTCSCCCBCTT
T ss_pred CEEEEEEHHHHCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
T ss_conf 33898545562257789999748878995465444563101002233268899999986168759999456764676666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 dg~l~p~~F~~~~~~~~~~LA~~sgvP~hV~Pvai~~~d~~pP~~~v~~~ige~R~~~~~~V~i~~G~pId~~~~~~~~~ 320 (367)
T d1iuqa_ 241 TGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAATHK 320 (367)
T ss_dssp TCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEEECGGGSCCC----------CCCCCBCCEEEECCCCCHHHHHHTSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECHHHHCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHHHCC
T ss_conf 66505665575505899999855799956856044133425887543320001036677861488679735666300022
Q ss_pred ----------------------------------------------E
Q ss_conf ----------------------------------------------8
Q 001511 467 ----------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~e~~ea~~k~l~d~v~eq~~~Lk~ai~gk~~~~~~~p~~~~~qp~ 367 (367)
T d1iuqa_ 321 NPEEVREAYSKALFDSVAMQYNVLKTAISGKQGLGASTADVSLSQPW 367 (367)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCGGGGCCSSCCEECCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 63889999999999999999999999985689822258888878999
|
| >d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp119 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=100.00 E-value=0 Score=27637.65 Aligned_cols=1 Identities=0% Similarity=0.968 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~Y~~~~~lR~~~Pv~~~~~~w~vt~~~di~~vl~d~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~~~R 80 (367)
T d1ue8a_ 1 MYDWFKQMRKESPVYYDGKVWNLFKYEDCKMVLNDHKRFSSNLTGYNDKLEMLRSGKVFFDIPTRYTMLTSDPPLHDELR 80 (367)
T ss_dssp CHHHHHHHHHHCSEEECSSCEEECCHHHHHHHHTCTTTEECCCSSTTTTHHHHHTTCCCCCCGGGSSGGGCCTTHHHHHH
T ss_pred CCHHHHHHHHCCCEEEECCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 90899999856998844998998799999999669853537765567542224466432224555552006867875667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~f~~~~l~~~~i~~~~~~ll~~l~~~~d~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (367)
T d1ue8a_ 81 NLTADAFNPSNLPVDFVREVTVKLLSELDEEFDVIESFAIPLPILVISKMLGINPDVKKVKDWSDLVALRLGRADEIFSI 160 (367)
T ss_dssp HHHHGGGSGGGSCHHHHHHHHHHHHTTCCSEEEHHHHTTTHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTSSSSSTTTCC
T ss_pred HCCCCCCCHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 30133478665144999999999986303345316665543444210110464211026778888877620004799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~ag~ett~~~l~~~~~~l~~~~~~~~~~~~~~ 240 (367)
T d1ue8a_ 161 GRKYLELISFSKKELDSRKGKEIVDLTGKIANSNLSELEKEGYFILLMIAGNETTTNLIGNAIEDFTLYNSWDYVREKGA 240 (367)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHCCCCCHHHHHHH
T ss_conf 99999999999999986423431012344441347777764133210010111222101023777633000111345556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~ai~E~lR~~p~~~~~~r~~~~~~~l~g~~ip~G~~V~~~~~~~~rdp~~~~dP~~F~P~R~~~~~l~FG~G~r~C~G~ 320 (367)
T d1ue8a_ 241 LKAVEEALRFSPPVMRTIRVTKEKVKIRDQVIDEGELVRVWIASANRDEEVFKDPDSFIPDRTPNPHLSFGSGIHLCLGA 320 (367)
T ss_dssp HHHHHHHHHHSCSBCCEEEEESSCEEETTEEECSSCEEEECHHHHTTCTTTSSSTTSCCTTCCSCCCCTTCCSTTSCTTH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 77877645205532334432344310221134048754433210035766689722018798999988779987188119
Q ss_pred ----------------------------------------------E
Q ss_conf ----------------------------------------------8
Q 001511 467 ----------------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------------~ 467 (1064)
.
T Consensus 321 ~lA~~e~~~~l~~Ll~rf~~~~~~~~~~~~~~~~~g~~~l~Vr~~r~ 367 (367)
T d1ue8a_ 321 PLARLEARIALEEFAKKFRVKEIVKKEKIDNEVLNGYRKLVVRVERT 367 (367)
T ss_dssp HHHHHHHHHHHHHHHHHEEEEEEEEEEECSCSSBCCEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 99999999999999985896634898534587758975236999979
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27567.88 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 80 (366)
T d1hz4a_ 1 EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM 80 (366)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 94430566213999999999999888999999999999854868996799999999999999879999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~ 160 (366)
T d1hz4a_ 81 ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 160 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 87501148999999888788788888999998899999986750341256788899888789998145666689999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 240 (366)
T d1hz4a_ 161 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240 (366)
T ss_dssp HHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 87663002468999988888887646678888999999999987311572699999999999986044898999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 241 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 76224666777889999999987587999999999999887642667479999999999999878999999999999997
Q ss_pred ---------------------------------------------E
Q ss_conf ---------------------------------------------8
Q 001511 467 ---------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~~a~~ll~~in 366 (366)
T d1hz4a_ 321 ANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREIN 366 (366)
T ss_dssp HHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 6531829999999999999999998659986999999999987559
|
| >d1moqa_ c.80.1.1 (A:) "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: SIS domain superfamily: SIS domain family: double-SIS domain domain: "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27565.27 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~m~kEI~eQP~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~vG~GsS~~aa~~~~~~~~~~~~~~v 80 (366)
T d1moqa_ 1 GDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPC 80 (366)
T ss_dssp CCCTTCSSHHHHHHHTHHHHHHHHHTTSEETTEECCGGGCSSHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999861788999889999999999876368620543103068887308889999822899999999999998439204
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~sef~~~~~~~~~~~lvI~iSqSG~s~~ti~a~~~a~~~g~~~ti~iT~~~~S~la~~ad~~i~~~~g~E~~~~~T 160 (366)
T d1moqa_ 81 DVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVAST 160 (366)
T ss_dssp EEEEHHHHHTSCCCCCTTEEEEEEESSSCCHHHHHHHHHHTTTTCSEEEEEESSTTCHHHHHSSEEEECCCCCCCSSSCS
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCEEECCCCCCCCHHH
T ss_conf 99965445244345699987998620589635899999999749973899989999978986074632356654220000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 k~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~G~~~g~A~E~ 240 (366)
T d1moqa_ 161 KAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPIALEG 240 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTCSEEEEEECGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH
T ss_conf 57899999999999986442032026778779999998876889987777899899997367526996577758999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i 320 (366)
T d1moqa_ 241 ALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHII 320 (366)
T ss_dssp HHHHHHHHCCEEEEEEGGGGGGTGGGGCSTTSCEEEESCCHHHHHHHHHHHHHTGGGTCCEEEEEEGGGCCCCBTTEEEE
T ss_pred HHHHHHHHHHEEEEECHHHHHCCCHHEECCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEE
T ss_conf 99999887674785037776277430230796089846898177999999999997498299996687322445775699
Q ss_pred ---------------------------------------------E
Q ss_conf ---------------------------------------------8
Q 001511 467 ---------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~p~~~~~l~pl~~~ip~Qlla~~~A~~~G~~PD~Pr~L~K~vtve 366 (366)
T d1moqa_ 321 EMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE 366 (366)
T ss_dssp EECCCCGGGHHHHHHHHHHHHHHHHHHHHTCCSSSCTTCCSCCCCC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEC
T ss_conf 6699756787999999999999999998198999999998785319
|
| >d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp119 species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=27561.67 Aligned_cols=1 Identities=0% Similarity=0.969 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~y~~~~~lR~~~Pv~~~~~~w~vt~~~~v~~vl~d~~~f~s~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~~~R 80 (366)
T d1io7a_ 1 MYDWFSEMRKKDPVYYDGNIWQVFSYRYTKEVLNNFSKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTSDPPLHDELR 80 (366)
T ss_dssp CHHHHHHHHHHCSEEECSSCEEECSHHHHHHHHHCTTTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGGGCCTTHHHHHH
T ss_pred CCHHHHHHHHCCCEEEECCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHH
T ss_conf 90899999835998873998999689999999659400336764555554433355432235555550117857888987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~f~~~~l~~~~~~i~~~a~~ll~~~~~~~~D~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (366)
T d1io7a_ 81 SMSADIFSPQKLQTLETFIRETTRSLLDSIDPREDDIVKKLAVPLPIIVISKILGLPIEDKEKFKEWSDLVAFRLGKPGE 160 (366)
T ss_dssp GGGTTTTCHHHHHHHHHHHHHHHHHHHHTCCTTSEEHHHHTTTHHHHHHHHHHHTCCGGGHHHHHHHGGGCTTSCCCTTC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 76145565130677888899999999873135563210000000122011001687345799999999999764030146
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~l~aG~~tt~~~l~~~l~~l~~~~~~~~~~~~~l~ 240 (366)
T d1io7a_ 161 IFELGKKYLELIGYVKDHLNSGTEVVSRVVNSNLSDIEKLGYIILLLIAGNETTTNLISNSVIDFTRFNLWQRIREENLY 240 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCHHHHHHHTSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTCHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 78888889887665420222045665542014589999999999999714420377999999874313322233442001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~ee~~r~~~~~~~~~R~~~~d~~i~g~~ip~G~~V~~~~~~~~rdp~~~~dP~~F~PeR~~~~~l~FG~G~r~C~G~ 320 (366)
T d1io7a_ 241 LKAIEEALRYSPPVMRTVRKTKERVKLGDQTIEEGEYVRVWIASANRDEEVFHDGEKFIPDRNPNPHLSFGSGIHLCLGA 320 (366)
T ss_dssp HHHHHHHHHHSCSBCCEEEEESSCEEETTEEECTTCEEEECHHHHTTCTTTSTTTTSCCTTCCSCCCCTTCCGGGSCTTH
T ss_pred HHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 00046553000234300010210024333436789777332010025611258665418898999988788986488369
Q ss_pred ---------------------------------------------E
Q ss_conf ---------------------------------------------8
Q 001511 467 ---------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------~ 467 (1064)
+
T Consensus 321 ~lA~~e~~~~l~~ll~rf~~~~~~~~~~~~~~~~~~~~~lpVrl~~ 366 (366)
T d1io7a_ 321 PLARLEARIAIEEFSKRFRHIEILDTEKVPNEVLNGYKRLVVRLKS 366 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEEEEECCCSSBCCEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEEEEEEC
T ss_conf 9999999999999999779882089865787764787554799969
|
| >d1h6za1 c.1.12.2 (A:538-903) Pyruvate phosphate dikinase, C-terminal domain {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate phosphate dikinase, C-terminal domain domain: Pyruvate phosphate dikinase, C-terminal domain species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=0 Score=27561.63 Aligned_cols=1 Identities=100% Similarity=0.337 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~w~d~~r~i~v~aNi~~~~d~~~a~~~GAdGIGL~RtEflfl~~~~~p~~~e~i~~~~~~~~~~~l~ 80 (366)
T d1h6za1 1 RSPDLKGSFQTILQWCQEMKRLGVRTNADTPADAAKARSFGAEGVGLCRTEHMFFEGSRINFIREMILADSASGRKAALD 80 (366)
T ss_dssp CCSCSTTHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHTTTCCSEEECBCSGGGSTTTHHHHHHHHHSCSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHCCCCEECHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHH
T ss_conf 98987458999999875378669997089999999999759984503887998618987882898763235577999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 k~~~~~~~~y~~i~~a~~~~pV~iRtlD~g~dk~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~E~NP~LG~RGiR~~L~ 160 (366)
T d1h6za1 81 KLLPIQRADFVGILRAMRGLPVTIRLLDPPLHEFVPHDAAAQFELAQKLGMPAEKVRNRVNALHELNPMLGHRGCRLGIT 160 (366)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCEEEECCCSCGGGGCCSSCSSTTTTSCSSSCCHHHHHHHHHSSCCSSSTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCC
T ss_conf 87788999999999970899879996224322357850555543111003543555532025557884123456655414
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~p~lf~~QlrAilrA~~~~~~~g~~~~l~iMiP~v~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~iG~MiEvPsaal~~ 240 (366)
T d1h6za1 161 YPEIYNMQVRAIIEAAIAVSEEGSSVIPEIMVPLVGKKEELSLIREEVVKTAEAVITKSGKRVHYTVGTMIEVPRAAVTA 240 (366)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTTCCCCEEEEECCCCSHHHHHHHHHHHHHHHHHHHHHSCSCCCCEEEEEECSHHHHHTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHH
T ss_conf 80667999999999999987528865401221206679999989999989999887504876441367641213899869
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 d~~a~~vDF~SIGTNDLtQy~la~dR~n~~v~~~~~~~~~~~~~~p~~~~~~~av~~lI~~a~~~~r~~~~~i~vsiCGE 320 (366)
T d1h6za1 241 DSIAQKADFFSFGTNDLTQMGCGFSRDDAGPFLRHYGNLGIYAQDPFQSIDQEGIGELVRIAVTKGRRVKPMLKMGICGE 320 (366)
T ss_dssp HHHTTTCSEEEECTTHHHHHHHTCCGGGCHHHHTTTTTTCSSSSCTTTSCCTTTHHHHHHHHHHHHHHHSTTCEEEECSG
T ss_pred HHHHHHCCEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 99863050899601046567765301551134567765200010556606699999999999998775189981997064
Q ss_pred ---------------------------------------------E
Q ss_conf ---------------------------------------------8
Q 001511 467 ---------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------~ 467 (1064)
+
T Consensus 321 ~a~dp~~~~~Li~lGi~~lSvsp~~ip~vk~a~a~~~~~~~r~~~~ 366 (366)
T d1h6za1 321 HGGDPATIGFCHKVGLDYVSCSPFRVPVAIVAAAHASIKDRRAAMK 366 (366)
T ss_dssp GGGCHHHHHHHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 0239999999998699979989277699999999854998787459
|
| >d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Glycerol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=27560.05 Aligned_cols=1 Identities=100% Similarity=0.669 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~f~~P~~~~~G~gal~~l~~~l~~~g~r~lvvtd~~~~~~~~~~l~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~ 80 (366)
T d1jq5a_ 1 AAERVFISPAKYVQGKNVITKIANYLEGIGNKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANI 80 (366)
T ss_dssp CCCBCCCCCSEEEEETTGGGGHHHHHTTTCSEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHH
T ss_pred CCCCEEECCCEEEEECCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99858958963999039999999999974994899989857899999999999877996999981899999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~D~IiavGGGs~iD~aK~iA~~~~~p~i~IPTT~gtgse~t~~avi~~~~~~~~~~~~~~~~P~~vi~Dp~l~~t 160 (366)
T d1jq5a_ 81 ARKAEAAIVIGVGGGKTLDTAKAVADELDAYIVIVPTAASTDAPTSALSVIYSDDGVFESYRFYKKNPDLVLVDTKIIAN 160 (366)
T ss_dssp HHHTTCSEEEEEESHHHHHHHHHHHHHHTCEEEEEESSCCSSCTTCSEEEEECTTSCEEEEEECSSCCSEEEEEHHHHHT
T ss_pred HHCCCCCEEEEECCCCCCCCHHEEEECCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCHHH
T ss_conf 62038868998168864422000120466535402434434320013212323567422110114557789998610432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 lP~~~~~sg~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (366)
T d1jq5a_ 161 APPRLLASGIADALATWVEARSVIKSGGKTMAGGIPTIAAEAIAEKCEQTLFKYGKLAYESVKAKVVTPALEAVVEANTL 240 (366)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 32788898677788899999998860654323034479999999999999987468876667635658999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~g~~~~~~~~~~~H~i~h~l~~~~g~~~~~~HG~~va~g~~~~~~l~~~~~~~~~~~~~l~~~lglP~~L~dlgi~~~~ 320 (366)
T d1jq5a_ 241 LSGLGFESGGLAAAHAIHNGFTALEGEIHHLTHGEKVAFGTLVQLALEEHSQQEIERYIELYLCLDLPVTLEDIKLKDAS 320 (366)
T ss_dssp HHHHHHHHHCCCHHHHHHHHGGGSCSGGGGSCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCCCSTTTTTCTTCC
T ss_pred HHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCC
T ss_conf 60433467876645211012676237764767633779999999998428899999999999986999999994989777
Q ss_pred ---------------------------------------------E
Q ss_conf ---------------------------------------------8
Q 001511 467 ---------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~l~~ia~~a~~~~~~~~nP~~~t~edi~~il~~a~~~~~~~~~~ 366 (366)
T d1jq5a_ 321 REDILKVAKAATAEGETIHNAFNVTADDVADAIFAADQYAKAYKEK 366 (366)
T ss_dssp HHHHHHHHHHHTSTTCGGGGTCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999840874147999999999999999999999987209
|
| >d2bvya2 c.1.8.3 (A:5-370) Mannanase A, ManA {Cellulomonas fimi [TaxId: 1708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Mannanase A, ManA species: Cellulomonas fimi [TaxId: 1708]
Probab=100.00 E-value=0 Score=27559.36 Aligned_cols=1 Identities=0% Similarity=-0.626 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 t~~lvd~~At~~t~~L~~~L~~~~g~~il~Gqq~~~~~g~~~~~~~~~~~~v~~~tG~yPAv~G~D~~~~~~~~~~~~~~ 80 (366)
T d2bvya2 1 TIAIVDADATAETRSLLSYLDGVRGEGILFGHQHTTSFGLTTGPTDGTTSDVKNVTGDFPAVFGWDTLIIEGNERPGLAE 80 (366)
T ss_dssp CBCCSSTTCCHHHHHHHHHHHHHTTTCEEEEEETTTTSCSSSCSCCSSCCHHHHHHSSCBSEEEEETTTTTTSSTTCCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 96665888799999999999985489879986146444666687426799999976888776443114567874433223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~Ggivt~~wH~~nP~~g~~~~~~~~~~~~~vlpg~~~~~~~~~~l~~ia~~a~~Lk~~~~~ 160 (366)
T d2bvya2 81 NTRDENIALFADYIRKADAIGGVNTVSAHVENFVTGGSFYDTSGDTLRAVLPGGSHHAELVAYLDDIAELADASRRDDGT 160 (366)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEECCCCCTTTSCCTTCCTTCHHHHHSTTSTTHHHHHHHHHHHHHHHHHCBCTTSC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 67311489999999976306997899971377888986557741689873689970689999999999999998750478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~VPVl~Rp~HE~nG~WfwWg~~~~~p~~y~~lwr~~~d~l~~~~g~~Nliwvwsp~~~~~~~~~~~~~~YPGDdyVDivG 240 (366)
T d2bvya2 161 LIPIVFRPWHENAGSWFWWGAAYGSPGEYQELYRFTVEYLRDVKGVSNFLYAWGPGGGFGGNRDVYLRTYPGDAFVDVLG 240 (366)
T ss_dssp BCCEEEECSTTTTSSSSTTSTTSSCHHHHHHHHHHHHHHHHHTSCCCSEEEEECCCSCCTTCHHHHGGGCCCTTTCSEEC
T ss_pred CCCEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHCCCCCEEEEEE
T ss_conf 86089831220379855057889998999999999999999725876169986168778865211665288987478988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~D~Y~~~~~~~~~~~~~~~l~~~~~~a~~~~Kp~altE~G~~~~~~~~~~~~~~W~~~~l~~i~~~~~~~~~~y~~~W~n 320 (366)
T d2bvya2 241 LDTYDSTGSDAFLAGLVADLRMIAEIADEKGKVSAFTEFGVSGGVGTNGSSPAQWFTKVLAAIKADPVASRNAYMETWAN 320 (366)
T ss_dssp CEEEESSCCHHHHHHHHHHHHHHHHHHHHHTCEECBCEEEETTCSSTTSCCCTTHHHHHHHHHHHSTTTTCCSEEEECCC
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 74457888752278999999999999873699579942002578644678742589999999873721001048988548
Q ss_pred ---------------------------------------------E
Q ss_conf ---------------------------------------------8
Q 001511 467 ---------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~~~~p~~g~~s~~dF~~~~~dp~~~f~~~l~~~y~~~~~~~~ 366 (366)
T d2bvya2 321 FDAGQHFVPVPGDALLEDFQAYAADPFTLFASEVTGAFDRTVAAAP 366 (366)
T ss_dssp CSSSSCSSCCTTCTTHHHHHHHHHSTTEEBGGGCCSTTCCCCCBCC
T ss_pred CCCCCCCEECCCCCCHHHHHHHHCCCHHHHHHHCCHHHCCCCCCCC
T ss_conf 9988761236997469999999759566542227032147666797
|
| >d1u5ua_ e.5.1.2 (A:) Allene oxide synthase-lipoxygenase protein, N-terminal domain {Black sea rod (Plexaura homomalla) [TaxId: 47982]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Allene oxide synthase domain: Allene oxide synthase-lipoxygenase protein, N-terminal domain species: Black sea rod (Plexaura homomalla) [TaxId: 47982]
Probab=100.00 E-value=0 Score=27557.83 Aligned_cols=1 Identities=0% Similarity=-0.791 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~HakG~ga~G~f~v~~d 80 (366)
T d1u5ua_ 1 WKNFGFEIFGEKYGQEELEKRIKDEHTPPPDSPVFGGLKLKLKKEKFKTLFTLGTTLKGFRRATHTVGTGGIGEITIVND 80 (366)
T ss_dssp CCCCHHHHHHHHHCHHHHHHHHHHHTSCCCCCTTTHHHHHHHHHHHHHHHHHHHHHHTTTSCSSSCSEEEEEEEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECC
T ss_conf 97620778877632577664000457899874223475431189999999865411468756654775645999998079
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~f~~G~~~Pv~vRfS~~~G~~D~~~d~RG~AiKf~~~~ge~~~D~v~~n~pvF~~rd~~~F~~~~~a~k~~p~ 160 (366)
T d1u5ua_ 81 PKFPEHEFFTAGRTFPARLRHANLKYPDDAGADARSFSIKFADSDSDGPLDIVMNTGEANIFWNSPSLEDFVPVEEGDAA 160 (366)
T ss_dssp CCSCCCSSSCTTCEEEEEEEEEBSSCSCTTSEECBEEEEESSSSSSCCSCEEEEEESSSCSCCSHHHHHHHTTCCTTHHH
T ss_pred CHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCHH
T ss_conf 01655876179975679999258888865567877369987658987325786337774304798886888860587637
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~f~~~~Pe~~~~~~~~~r~~P~s~~~~~y~s~~tf~fvn~~G~~~yvK~~~~P~~~~~~~~~e~~~~~~~~~~~~~~~~ 240 (366)
T d1u5ua_ 161 EEYVYKNPYYYYNLVEALRRAPDTFAHLYYYSQVTMPFKAKDGKVRYCRYRALPGDVDIKEEDESGRLTEEEQRKIWIFS 240 (366)
T ss_dssp HHHHTTCHHHHHHHHHHCEESCSCGGGCCEECCSCEEEECTTCCEEEEEEEEEESSSCCCGGGCTTCCCHHHHTTTTCCS
T ss_pred HHHHHCCHHHHHHHHHHCCCCCCCCCCCCEECCCCEEEECCCCCEEEEEEEEEECCCCCCCCHHHHHCCCHHHHHHHCCC
T ss_conf 89987098999999985577999834475002261787847898899999998457776642444323722344321246
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~d~Lr~dl~~~l~~g~~~~~l~vQl~~~~d~d~~~i~D~Tk~Wpe~~~P~~~vG~ltl~~~~~~~e~EqlaF 320 (366)
T d1u5ua_ 241 RHENEKRPDDYLRKEYVERLQKGPVNYRLQIQIHEASPDDTATIFHAGILWDKETHPWFDLAKVSIKTPLSPDVLEKTAF 320 (366)
T ss_dssp CCTTCCSCTTHHHHHHHHHHHHSCEEEEEEEEEEECCTTCCGGGGCTTSCCCTTTSCCEEEEEEEEEEECCHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHCC
T ss_conf 54102576377899999998679954999999546354789998887516886567637879999799897057576524
Q ss_pred ---------------------------------------------E
Q ss_conf ---------------------------------------------8
Q 001511 467 ---------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------~ 467 (1064)
.
T Consensus 321 ~P~~~~pgi~~~~~~~~~d~~si~~~R~~vY~~s~~~R~~~~~~~~ 366 (366)
T d1u5ua_ 321 NIANQPASLGLLEAKSPEDYNSIGELRVAVYTWVQHLRKLKIGSLV 366 (366)
T ss_dssp CTTCCCTTSCCCCCSSSSSTTHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8755699837778522243442888999999999998754501569
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=27556.96 Aligned_cols=1 Identities=100% Similarity=1.367 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~r~~~~~~~~~~~i~~~g~~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a 80 (366)
T d2aeua1 1 LRLEKARKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALLNTYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSA 80 (366)
T ss_dssp CCCCHHHHHHHHHHHHTCGGGCEECSSCCCCCCCCHHHHHHHTSTTHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHH
T ss_pred CCHHHHHHHHHHHHCHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHH
T ss_conf 96366788899985633330275432688888864889999998438245689999999987068984479996889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~l~al~~~~~vi~~~~~~~~~~~~~~~~l~g~~~v~~~d~e~l~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia 160 (366)
T d2aeua1 81 ILATILALKPKKVIHYLPELPGHPSIERSCKIVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTA 160 (366)
T ss_dssp HHHHHHHHCCSEEEEECSSSSCCTHHHHHHHHTTCEEEEESCHHHHHTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCEEECCCCHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 99999983899979994699862419988976288677799999999736877607999945888867879999999874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~~G~i~~~~~~i~~~~~~~~~~g~~~~~~~~~a~~ 240 (366)
T d2aeua1 161 KNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIY 240 (366)
T ss_dssp HHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCSCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCHHHCCCEEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 00817899956721432364468987662861787136444545521589706778999999972235568779899888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~aL~tl~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV 320 (366)
T d2aeua1 241 RALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGI 320 (366)
T ss_dssp HHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEEECCCCHHHHHHHHHHHCCE
T ss_conf 89986049999999999999999988604111133566667543457630110477760102456879999999981988
Q ss_pred ---------------------------------------------E
Q ss_conf ---------------------------------------------8
Q 001511 467 ---------------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~ip~~~~p~~~~~lRis~~~~~~~~i~~d~l~~ai~~~lK~~~~~ 366 (366)
T d2aeua1 321 ITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAFKS 366 (366)
T ss_dssp ECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCCCCEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 9997898889998799951655411089999999999999998459
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=27489.93 Aligned_cols=1 Identities=100% Similarity=0.636 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~p~ls~e~l~~~yr~M~l~R~~e~~~~~l~~qG~ig~~h~~~GqEa 80 (365)
T d1w85a_ 1 TFQFPFAEQLEKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEA 80 (365)
T ss_dssp CCCCCHHHHHHHHHHTCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHH
T ss_pred CCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 98797433321022139769999999999885457999999999999999999999999999997799656008898699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~vg~~~~l~~~D~i~~~yR~hg~~la~G~~~~~~~~~~~G~~~g~~~~~~~~~~~~~~ivG~~~p~AvG~A~a~k~~~~ 160 (365)
T d1w85a_ 81 SQIASHFALEKEDFILPGYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIPEGVNVLPPQIIIGAQYIQAAGVALGLKMRGK 160 (365)
T ss_dssp HHHHHHHTCCTTCEEECCSSCHHHHHHTTCCHHHHHHHHHTCGGGGCCCTTCCBCCCCCSTTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCCEEEECCCCHHEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 99999986797687631366112255569999999986279988667888755605533357666412567765643046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~~aist~~~~~~~~~~~~~r~~~~Gi~~~~vDG~D~~~v~~ 240 (365)
T d1w85a_ 161 KAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYA 240 (365)
T ss_dssp SCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHH
T ss_conf 88146631677643126888887764336674379997024333322202133211111012357617981440687999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~dd~~~~YR~~eEi~~w~~~DPI~~~~~~L~~~g~~~~~el~~i~~e~~~ 320 (365)
T d1w85a_ 241 AVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKE 320 (365)
T ss_dssp HHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHHTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999997423796179974134356667868863124774789998848989999999998799999999999999999
Q ss_pred --------------------------------------------E
Q ss_conf --------------------------------------------8
Q 001511 467 --------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------~ 467 (1064)
+
T Consensus 321 eV~~A~~~A~~sP~P~~~~l~~~Vy~e~p~~l~eq~~~~~~~~~~ 365 (365)
T d1w85a_ 321 EIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYKEKESK 365 (365)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHTSCSSCCHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999999999868998989998453238998899999999887469
|
| >d1fn9a_ d.196.1.1 (A:) Outer capsid protein sigma 3 {Reovirus [TaxId: 10891]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Outer capsid protein sigma 3 superfamily: Outer capsid protein sigma 3 family: Outer capsid protein sigma 3 domain: Outer capsid protein sigma 3 species: Reovirus [TaxId: 10891]
Probab=100.00 E-value=0 Score=27492.32 Aligned_cols=1 Identities=0% Similarity=0.570 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 MEVRlPNfHSvVE~I~nSYe~rp~~yst~egWd~~~f~~PDVIkVG~AYCCaQCCGVLGapp~~~~~FPHHrCHQq~~R~ 80 (365)
T d1fn9a_ 1 MEVCLPNGHQVVDLINNAFEGRVSIYSAQEGWDKTISAQPDMMVCGGAVVCMHCLGVVGSLQRKLKHLPHHRCNQQIRHQ 80 (365)
T ss_dssp CCCCCCCHHHHHHHHHHHTTTCCCEEBTTTBTCCSSCCCCSEEEETTEEEETTTTEEEEEGGGTCCSCCCCCCCCCCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 96446771149999998874577644520131454314876599867587400154336786678607613676776404
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 dtPLLrfvgRvTaH~KRgmLd~~a~~~~~i~D~~~e~~~rv~~egg~lvE~~~~~lD~~s~~~SI~sdWT~PLe~~~dlD 160 (365)
T d1fn9a_ 81 DYVDVQFADRVTAHWKRGMLSFVAQMHEMMNDVSPDDLDRVRTEGGSLVELNWLQVDPNSMFRSIHSSWTDPLQVVDDLD 160 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCCEEEECCGGGSSTTSTTTCTTCCTTSCCCCCTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHCCCCCCHHCCCCCC
T ss_conf 75577655578887765279999999999873077776676636886331333421606653334304677201014420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 tr~D~~~tal~~MIDsSdl~pnf~mrdpshafngvkl~gdarqt~fsrtf~~rsslewgvmvydysele~dp~kgr~yr~ 240 (365)
T d1fn9a_ 161 TKLDQYWTALNLMIDSSDLIPNFMMRDPSHAFNGVKLGGDARQTQFSRTFDSRSSLEWGVMVYDYSELEHDPSKGRAYRK 240 (365)
T ss_dssp HHHHHHHHHHHHHHHHTTCEESSEESCTHHHHTTSCBCGGGGGCCCCSSCCTTSCCCCCCEEECCHHHHHCGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEEHHHHCCCCCCCCHHHH
T ss_conf 35789999888600165305332415833322662005740002000025776631444799765663368544502355
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 elvtpardfghfglshysrattp~lgkmpavfsgmltgnckmyp~i~gtak~kt~~kl~~avn~~wgvekirya~gpgg~ 320 (365)
T d1fn9a_ 241 ELVTPARDFGHFGLSHYSRATTPILGKMPAVFSGMLTGNCKMYPFIKGTAKLKTVRKLVEAVNHAWGVEKIRYALGPGGM 320 (365)
T ss_dssp HHTSTHHHHCCGGGCCCCEEECCCSTTCCEEECCGGGTSCCEEECCCHHHHHGGGHHHHHHHHHHSCHHHHHHHHCTTHH
T ss_pred HHCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCC
T ss_conf 53673021364441000223671002562565310147621431023620024378899987745403420221168863
Q ss_pred --------------------------------------------E
Q ss_conf --------------------------------------------8
Q 001511 467 --------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------~ 467 (1064)
-
T Consensus 321 tgwy~rtmqqapivltpa~ltmfpdt~kfgd~~~pvmigdpmi~g 365 (365)
T d1fn9a_ 321 TGWYNRTMQQAPIVLTPAALTMFPDTIKFGDLNYPVMIGDPMILG 365 (365)
T ss_dssp HHHHHHHHHHHHHHTSCGGGGCCCSSCSSCSSSSCEEECCCEEEC
T ss_pred CHHHHHHHHHCCEEECHHHHCCCCCCCCCCCCCCCEECCCCCCCC
T ss_conf 324443453088673468850277742135667863317864369
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=100.00 E-value=0 Score=27487.30 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~k~~r~~l~fdDVllvP~~st~~s~~vdl~~~it~~~~~~iPIIsA~MDtV~~~~mA~~ls~~Gglgvlhr~~~~~ 80 (365)
T d1zfja1 1 SNWDTKFLKKGYTFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTVTGSKMAIAIARAGGLGVIHKNMSIT 80 (365)
T ss_dssp CGGGGSSCCCCCCGGGEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHH
T ss_pred CCCCHHHHHCCCCCCEEEEECCCCCCCHHHCEEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCHH
T ss_conf 97211223026880108985787776776726237964895268988978988768889999999779916974866789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 e~~~~~~~~~~~~~~~~v~aavGv~~~~~er~~~l~~agvd~ivID~A~G~s~~~~~~i~~ik~~~~~~~iIaGNV~T~e 160 (365)
T d1zfja1 81 EQAEEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAE 160 (365)
T ss_dssp HHHHHHHHHHHHTSCBCCEEEECSSTTHHHHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHHHCSSSCEEEEEECSHH
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCHH
T ss_conf 98877665443037569999944681277899999986998899978865543214788999865887644411343489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAla~GAd~VMlG~ 240 (365)
T d1zfja1 161 GARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGS 240 (365)
T ss_dssp HHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEEST
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCEEEECC
T ss_conf 99999866976378640256445676301342242138999999997579569805884762066655321587898642
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~lAg~~EsPG~~~~~~g~~~k~~~Gm~s~~a~~~~~~~r~~~~~~~~~~~~~~eG~~~~v~~~G~~~~~~~~l~gglrs~ 320 (365)
T d1zfja1 241 MFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKGSSDRYFQGSVNEANKLVPEGIEGRVAYKGAASDIVFQMLGGIRSG 320 (365)
T ss_dssp TTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC--------------CCCCCSBCEEEEECCBCHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCEEEECCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 21046678974797778475552775557555456644434455443221224684478546787789999999999998
Q ss_pred --------------------------------------------E
Q ss_conf --------------------------------------------8
Q 001511 467 --------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------~ 467 (1064)
-
T Consensus 321 m~y~G~~~l~e~~~~~~fv~vt~~~~~E~~~h~~~~~~~~~~y~~ 365 (365)
T d1zfja1 321 MGYVGAGDIQELHENAQFVEMSGAGLIESHPHDVQITNEAPNYSV 365 (365)
T ss_dssp HHHTTCSSHHHHHHHCCEEECCHHHHHHHSCCSSCCSSCBTTBC-
T ss_pred HHHCCCCCHHHHHHCCEEEEECCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 762487749999629889999922010258862577157899869
|
| >d1um0a_ d.258.1.1 (A:) Chorismate synthase, AroC {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Chorismate synthase, AroC superfamily: Chorismate synthase, AroC family: Chorismate synthase, AroC domain: Chorismate synthase, AroC species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=0 Score=27490.68 Aligned_cols=1 Identities=0% Similarity=1.201 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 Mns~G~~~r~tt~GESHG~~ig~vIdG~PaGl~i~~e~I~~~L~RR~pG~~~~~t~R~E~D~veilSGv~~G~TtG~PI~ 80 (365)
T d1um0a_ 1 MNTLGRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKRRQGGRNVFITPRKEDDKVEITSGVFEDFSTGTPIG 80 (365)
T ss_dssp CCEECSSSEEEECCSCCSSEEEEEEECCCBTCBCCHHHHHHHHHHHTTCCSSCCCHHHHSCEEEECSSEETTEECSSCEE
T ss_pred CCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECEECCEECCCCCE
T ss_conf 98764422788515578884489992408688858999999986679999998766899982799027368826577405
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~D~RgggRsSaReTa~rVaaGaiAk~lL~~~gI~v~~~v~~IG~i 160 (365)
T d1um0a_ 81 FLIHNQRARSKDYDNIKNLFRPSHADFTYFHKYGIRDFRGGGRSSARESAIRVAAGAFAKMLLREIGIVCESGIIEIGGI 160 (365)
T ss_dssp EEEECCCSCCCCCCCCTTBCCTTSTHHHHHHHHCCCCCCCTTCSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEETTE
T ss_pred EEECCCCCCCCCHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC
T ss_conf 55414656751456664257777761111100785367888618899999999999999988875471589999944544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSvGG~ve~~~~gv~~~~g~P~GlG~P~f~kLda~LA~A~mSI 240 (365)
T d1um0a_ 161 KAKNYDFNHALKSEIFALDEEQEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLPIGLGQGLYAKLDAKIAEAMMGL 240 (365)
T ss_dssp ECSSCCHHHHHHSTTCBSCHHHHHHHHHHHHHHHHTTCCBCEEEEEEEEESSTTCCCCSCCSBTTTBCHHHHHHHHHHTS
T ss_pred CCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 45431011202444036872667888999999985188768668999855643444786557876421236999877425
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 pAvKgVE~G~Gf~~a~~~GSe~nD~~~~~~~~tN~aGGi~GGiSnG~pI~~rva~KP~sSI~~pq~Tvd~~~~e~~~~~~ 320 (365)
T d1um0a_ 241 NGVKAVEIGKGVESSLLKGSEYNDLMDQKGFLSNRSGGVLGGMSNGEEIIVRVHFKPTPSIFQPQRTIDINGNECECLLK 320 (365)
T ss_dssp TTEEEEEETTGGGGGGSBHHHHCCCEETTEESCCTTTTEETTEECSSCEEEEEEECCCSCCSSCEEEEBTTSCEEEECCC
T ss_pred CCEEEEEECCCHHHHHCCHHHHCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEEECCCCCCCCCCCCEECCCCEEEEEEC
T ss_conf 33235641454666652576506732478874567785105767887669999957875567755435779987776016
Q ss_pred --------------------------------------------E
Q ss_conf --------------------------------------------8
Q 001511 467 --------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------~ 467 (1064)
.
T Consensus 321 gRhDpCivprA~~V~EAm~alvlaD~~L~~~~~~~~~~k~~~~~~ 365 (365)
T d1um0a_ 321 GRHDPCIAIRGSVVCESLLALVLADMVLLNLTSKIEYLKTIYNEN 365 (365)
T ss_dssp SCCCSCTHHHHHHHHHHHHHHHHHHHHHHGGGSBHHHHHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 988970726528999999999999999997563599999874179
|
| >d2pnwa1 b.52.1.4 (A:5-369) Membrane-bound lytic murein transglycosylase A, MLTA {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double psi beta-barrel superfamily: Barwin-like endoglucanases family: MLTA-like domain: Membrane-bound lytic murein transglycosylase A, MLTA species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=0 Score=27489.49 Aligned_cols=1 Identities=0% Similarity=1.566 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
|
T Consensus 1 f~l~pvsf~~LPGW~~Dd~~~al~Af~~SC~~l~~~~~~~~~~~~~t~~~~~~~c~~a~~~~~~~~~~aR~Ffe~~F~py 80 (365)
T d2pnwa1 1 FSIDEVSFRDLPGWGQDDPRKLFPAMATILSHLRNAKPYRTGALGITAAELVSLLELAERGQVNSPEQARQFFETNSVPF 80 (365)
T ss_dssp CEEEECCGGGSTTGGGCCCTTHHHHHHHHHHHHTSSCCCCCCTTCCCHHHHHHHHHHHHHCCCCSHHHHHHHHHHHEEEE
T ss_pred CCCEECCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCEEE
T ss_conf 96337188778894112499999999999998721785545666778999999999998535699899999999718899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~v~~~~~~~Gl~TGYYEP~l~gS~~~~~~y~~PlY~~P~dLv~vdl~~f~~~l~~~~~~gR~~~~~~~py~~R~~I~~g~ 160 (365)
T d2pnwa1 81 RISPAQGKSGFVTAFYEPELEVSATPDDVWRYPIYRRPPELVDIDNDNRPDGFDPSYAFGKADEEGISYFPDRRAIDEGC 160 (365)
T ss_dssp EEEC----CEEEEEEEECEEEEESSCCSSSCEEEEBCCTTEEECCTTTCCTTCCTTCCEEEEETTEEECCCCHHHHHTTT
T ss_pred EECCCCCCCEEEEEEEEEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCC
T ss_conf 94048987536898667767000378988987744689531006622255434665302443168766777445554465
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 l~~~g~elaw~~d~vd~fflqIQGSgrv~l~dG~~~rv~yag~NG~pY~sigr~Li~~G~i~~~~~sm~~ir~wl~~nP~ 240 (365)
T d2pnwa1 161 LRGRGLEIAWARSKVDLFFVHVQGAARLVFPDGAIKRITYAAKAGHVFSPIGRLLLDRGELDPKTISMQTIRQWLADHPD 240 (365)
T ss_dssp TTTSSCEEEEESCHHHHHHHHHHTEEEEECTTSCEEEEEEEEECSCCCCCHHHHHHHTTCSCTTTCCHHHHHHHHHHCGG
T ss_pred CCCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCHHHCCHHHHHHHHHHCHH
T ss_conf 46778623673685777886303617999089998999871678986505679998768878210799999999997969
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~ll~~N~syvFFr~~~~~~~~~Gp~Ga~gvpLtp~rSiAvD~~~~plG~p~~l~~~~~~~~~~~~~~~rl~~aqDTG 320 (365)
T d2pnwa1 241 EVDGVLWHNRSYIFFREADVAGLDMGPIAAAKVPLVAGRALAVDRLIHTFGLPFFIHAPTLTHLDDGKPFARLMLALDTG 320 (365)
T ss_dssp GHHHHHTTCCCCEEEEEC-------CCBCTTSSBCCTTTEEECCTTTCCTTCEEEEEETTCCTTTTTSCEEEEEEEEECC
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECC
T ss_conf 99999860997599887788776789756137120125035405542578865999656777689987100669997446
Q ss_pred --------------------------------------------E
Q ss_conf --------------------------------------------8
Q 001511 467 --------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------~ 467 (1064)
.
T Consensus 321 gAIkG~~R~D~f~G~G~~A~~~Ag~~~~~g~~~~Llpk~~~~r~~ 365 (365)
T d2pnwa1 321 SAIVGPARGDIFTGSGFEAGELAGTVRNEADFYILLPRIAAERYR 365 (365)
T ss_dssp TTCCSTTEEEEEEEESHHHHHHHHTCEEEEEEEEEEEHHHHGGGC
T ss_pred CCCCCCCCEEEEEECCHHHHHHHHCCCCCEEEEEEEECCHHHHCC
T ss_conf 523689726997408889998860768744799998734354439
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=100.00 E-value=0 Score=27486.20 Aligned_cols=1 Identities=0% Similarity=1.101 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~L~~~i~~~i~~~G~i~f~~fM~~~LY~p~~GYY~~~~~iG~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~ 80 (365)
T d1zkda1 1 IDQTALATEIKRLIKAAGPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQT 80 (365)
T ss_dssp CCSSHHHHHHHHHHHHHCSEEHHHHHHHHHHCTTTCTTTCC--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 97207899999999956985599999997079986344789978899886788734799999999999999997177766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~~~i~w~~~~~~~~~~~g~iiaNE~fDA 160 (365)
T d1zkda1 81 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWHDSFEDVPEGPAVILANEYFDV 160 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEESSGGGSCCSSEEEEEESSGGG
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEECCCHHHCCCCCEEEEECCCCCC
T ss_conf 16995188611788866554123311355405898435456778898874166540111474243558759993255755
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 lPv~~~~~~~~~~~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~G~~l~i 240 (365)
T d1zkda1 161 LPIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGFEALLPPLARLSPPGAVFEWRPDTEILKIASRVRDQGGAALII 240 (365)
T ss_dssp SCCEEEEEETTEEEEEEEEECTTSCEEEEECSSCCTTCGGGSCGGGGGCCTTCEEEECCSHHHHHHHHHHHHHCEEEEEE
T ss_pred CCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 00128997475421322232255204776310212467763033443147886323565899998765666405653433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 DYG~~~~~~~~~l~~~~~h~~~d~l~~pG~~DIT~~VnFs~L~~~~~~~g~~~~~~~tQ~~FL~~~GI~~~~~~l~~~~~ 320 (365)
T d1zkda1 241 DYGHLRSDVGDTFQAIASHSYADPLQHPGRADLTAHVDFDALGRAAESIGARAHGPVTQGAFLKRLGIETRALSLMAKAT 320 (365)
T ss_dssp EEEESSCCBCCCCEEECSSSEECTTSSTTSSEEECCEEHHHHHHHHHHTTCEEEEEEEHHHHHHHTTHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHCCCCEECCCCHHHHHHHCCHHHHHHHHHCCCC
T ss_conf 10045554444203344443366213898753265118899999987458615234358999997889999999975399
Q ss_pred --------------------------------------------E
Q ss_conf --------------------------------------------8
Q 001511 467 --------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~~~~~~~~~Li~p~~~~MGe~FKVl~~~~~~~~~~~gf~~~ 365 (365)
T d1zkda1 321 PQVSEDIAGALQRLTGEGRGAMGSMFKVIGVSDPKIETLVALSDD 365 (365)
T ss_dssp HHHHHHHHHHHHHHHCEETTEETTTEEEEEEECTTCCCCTTTTCC
T ss_pred HHHHHHHHHHHHHHCCCCCHHCCHHEEEEEEECCCCCCCCCCCCC
T ss_conf 889999999999726988100211279999817999988898999
|
| >d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Fe-only hydrogenase superfamily: Fe-only hydrogenase family: Fe-only hydrogenase domain: Fe-only hydrogenase, catalytic domain species: Clostridium pasteurianum [TaxId: 1501]
Probab=100.00 E-value=0 Score=27484.54 Aligned_cols=1 Identities=100% Similarity=0.437 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~i~~v~~~l~~~~k~vV~siaP~~r~sla~~f~l~~~~~~~~kl~~~lk~LGF~~V~dt~~gad~~~~e~~~E~~~r~~~ 80 (365)
T d3c8ya1 1 HMDRVKNALNAPEKHVIVAMAPSVRASIGELFNMGFGVDVTGKIYTALRQLGFDKIFDINFGADMTIMEEATELVQRIEN 80 (365)
T ss_dssp CHHHHHHHHHCTTCEEEEEECGGGGGTGGGGGTCCSSCCCHHHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHC
T ss_conf 97899999968995899998927899999984899430028999999998699999983788899999999999999865
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~P~isS~CPg~V~yiEk~~PeLip~ls~v~SP~~~~g~liK~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~r~e~~~ 160 (365)
T d3c8ya1 81 NGPFPMFTSCCPGWVRQAENYYPELLNNLSSAKSPQQIFGTASKTYYPSISGLDPKNVFTVTVMPCTSKKFEADRPQMEK 160 (365)
T ss_dssp TCSCCEECCCCHHHHHHHHHHCGGGGGGBCCBCCHHHHHHHHHTTHHHHTTCCCGGGEEEEEEESCSHHHHHHTCTTSEE
T ss_pred CCCCCEEEECCHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCCCCCC
T ss_conf 89987598479899999999675653325678888999999999987876099911289999834643224542821245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~dVD~VLT~~El~~~l~~~~i~~~~l~~~~~~~~~~~~s~~g~~~~~sGG~~~~~~~~~~~~~~~~~~~~~~~~~~r 240 (365)
T d3c8ya1 161 DGLRDIDAVITTRELAKMIKDAKIPFAKLEDSEADPAMGEYSGAGAIFGATGGVMEAALRSAKDFAENAELEDIEYKQVR 240 (365)
T ss_dssp TTEESCSEEEEHHHHHHHHHHTTCCGGGCCCCCCCGGGTCCCHHHHTTTSTTHHHHHHHHHHHHHHHTCCCSCCCCGGGC
T ss_pred CCCCCCCEEEEHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECC
T ss_conf 78987488953999999999759992238886668766777866512123663999999998774368865552024306
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 g~~~i~~~~~~~~~~~~~~~~v~G~~n~~~~l~~~k~~~~~~~fvEvmACpgGCinGgGq~~~~~~~~~~~~~~~~r~~~ 320 (365)
T d3c8ya1 241 GLNGIKEAEVEINNNKYNVAVINGASNLFKFMKSGMINEKQYHFIEVMACHGGCVNGGGQPHVNPKDLEKVDIKKVRASV 320 (365)
T ss_dssp SSCSEEEEEEEETTEEEEEEEEESHHHHHHHHHTSGGGSSCCCEEEEESSTTSGGGCTTSCCCCHHHHHHSCHHHHHHHH
T ss_pred CCCCEEEEEEEECCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 87751899997089178999960299999999987459999728998068998707998688896013268999999998
Q ss_pred --------------------------------------------E
Q ss_conf --------------------------------------------8
Q 001511 467 --------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------~ 467 (1064)
+
T Consensus 321 l~~~d~~~~~r~~~en~~~~~ly~~~l~~p~~~~~~~lLHT~y~~ 365 (365)
T d3c8ya1 321 LYNQDEHLSKRKSHENTALVKMYQNYFGKPGEGRAHEILHFKYKK 365 (365)
T ss_dssp HHHHHHHCSCCSGGGCHHHHHHHHHTTCSTTSHHHHHHSBCCCCC
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCC
T ss_conf 875430377788855999999999986799838999972687029
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=100.00 E-value=0 Score=27482.03 Aligned_cols=1 Identities=0% Similarity=-0.593 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (365)
T d1jofa_ 1 PLHHLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHP 80 (365)
T ss_dssp CEEEEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCEEEECCCCCEEEEEECCCEEEEEEECCCCEEEEEEEC
T ss_conf 91199999314999899999858889389845445168999777999489899999938947899990899769876412
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~ 160 (365)
T d1jofa_ 81 IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred CCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCEEEEECCCCCEEE
T ss_conf 89986789987899879999932799789986745788742068664033004764675568898115978889999899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~ 240 (365)
T d1jofa_ 161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP 240 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred EEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCC
T ss_conf 82079987999970688716652511112788740899988998669995158998999995598753778731240245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~ 320 (365)
T d1jofa_ 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCC
T ss_conf 56556665444435776316998999978997135787542279999856887144676766777679986478964899
Q ss_pred --------------------------------------------E
Q ss_conf --------------------------------------------8
Q 001511 467 --------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------~ 467 (1064)
+
T Consensus 321 G~~l~va~~~s~~v~v~~~~~~~l~~~~~~~vp~p~~~~~~~w~~ 365 (365)
T d1jofa_ 321 DEWMAITDDQEGWLEIYRWKDEFLHRVARVRIPEPGFGMNAIWYD 365 (365)
T ss_dssp TTEEEEECSSSCEEEEEEEETTEEEEEEEEECCSTTEEEEEEEEC
T ss_pred CCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEECC
T ss_conf 999999967999499999828867278999889999976879639
|
| >d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Cobalamin-independent methionine synthase domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=27487.74 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~lpTT~VGS~PRp~eLk~a~e~~~~G~is~eel~~~~~~ai~~~v 80 (365)
T d1u1ha2 1 EGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKVSEEDYVKAIKEEIKKVV 80 (365)
T ss_dssp THHHHHTTTTSSCCCSSSCCHHHHHHHHHHHSCCCSSCBBCCSBCCCCSCCC-------------CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 96899988089865267983789999999847999986232477889989999999976699999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~Q~~aGidiItDGE~~r~d~~~~f~~~l~G~~~~~~~~~~~~~~~~~~~p~~~g~i~~~~~~~~~~~~~~~~~~~~~~k 160 (365)
T d1u1ha2 81 DLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMK 160 (365)
T ss_dssp HHHHTTCCSBBCCBCTTCSCTTHHHHTTSTTEECCSSCCEEEETTEEECCCEECSCCCCCSCSSHHHHHHHTTSCSSCBE
T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCEEEECCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 99998479967639813035999999752670000464157469711066041475446676408999998850122234
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~i~gp~~l~~~~~~~~y~~~~e~~~dLa~ay~~el~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~n~~~ 240 (365)
T d1u1ha2 161 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITN 240 (365)
T ss_dssp EEEECHHHHHHTSEECSSSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECTTTTTTCCSSGGGHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 45550368853126668899899999999999999999996699389957628764321242159999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~v~~~~~~g~~~~~~~~l~~l~vd~l~le~~~~~~~~l~~~~~~~p~~K~l~~GVVd~r~~~~E~~e~v~~ri 320 (365)
T d1u1ha2 241 CGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRV 320 (365)
T ss_dssp TTSCTTSEEEEEESCSCCTTTHHHHHTTCCSEEEECCSSSCGGGGGGTSSSSCCCSEEEECCSCTTSSSCCCHHHHHHHH
T ss_pred HCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 43566655899732655412478885477420001103586278887775288998899888827999879999999999
Q ss_pred --------------------------------------------E
Q ss_conf --------------------------------------------8
Q 001511 467 --------------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~a~~~v~~erl~lspdCGf~~l~~~~a~~KL~~lv~~a~~vr~e 365 (365)
T d1u1ha2 321 NKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRSQ 365 (365)
T ss_dssp HHHHTTSCTTTBCBCCSSCCTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999973885539981888999799899999999999999999659
|
| >d1w0pa3 b.68.1.1 (A:217-346,A:544-777) Vibrio cholerae sialidase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Vibrio cholerae sialidase species: Vibrio cholerae [TaxId: 666]
Probab=100.00 E-value=0 Score=27406.87 Aligned_cols=1 Identities=0% Similarity=0.636 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~ripsl~~~~~~~g~~~a~~~~r~~~~~~~~~~~~~di~~~RS~DgGkTWs~~~~i~~~~~~~~~~~~~~p~~~ 80 (364)
T d1w0pa3 1 VIFRGPDRIPSIVASSVTPGVVTAFAEKRVGGGDPGALSNTNDIITRTSRDGGITWDTELNLTEQINVSDEFDFSDPRPI 80 (364)
T ss_dssp EEECTTCEEEEEEECSSSTTCEEEEEEEEETCSSTTCTTCEEEEEEEEESSSSSSCCCCEESSGGGCTTSCEEEEEEEEE
T ss_pred CCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCEEE
T ss_conf 93468973547989807899899999623378998655896459999937897589998883158877786534577699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~d~g~tw~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 160 (364)
T d1w0pa3 81 YDPSSNTVLVSYARWPTDAAQNGDRIKPWMPNGIFYSVYDVASGNWQAPIVNPGPGHGITLTRQQNISGSQNGRLIYPAI 160 (364)
T ss_dssp EETTTTEEEEEEEEEETTCCSGGGCCCTTSCCEEEEEEEETTTTEECCCEEECCSSCCEECCCCTTSTTCCTTCEEEEEE
T ss_pred EECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEE
T ss_conf 97999969999975178877566455355448579986579998512352146420003505797120351992999788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~s~d~g~tw~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~l~~~~R~~~~~~~~~~~~~~~~~~ 240 (364)
T d1w0pa3 161 VLDRFFLNVMSIYSDDGGSNWQTGSTLPIPFRWKSSSILETLEPSEADMVELQNGDLLLTARLDFNQIVNGVNYSPRQQF 240 (364)
T ss_dssp EESSSCEEEEEEEESSSSSSCEECCCCCCCEEESSSSCEEECEEEEEEEEECTTSCEEEEEEEESCCEETTEECCSEEEE
T ss_pred EECCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCEEEE
T ss_conf 50578885037885168857886455676665334544345788722699965865678998157865577688975999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~gR~~~~l~~S~D~G~TW~~~~~l 320 (364)
T d1w0pa3 241 LSKDGGITWSLLEANNANVFSNISTGTVDASITRFEQSDGSHFLLFTNPQGNPAGTNGRQNLGLWFSFDEGVTWKGPIQL 320 (364)
T ss_dssp EESSSSSSCEEEEEEEGGGSTTCCSSCCCCEEEEEECTTSCEEEEEEEECTTTTTSSSSBSEEEEEESSTTSCCEEEEEC
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEE
T ss_conf 97589842235546753335776788632014776057896389996787876577860125999984799679997497
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------8
Q 001511 467 -------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~g~~~Ys~~~~~~~g~~~~~ye~~~~~i~~~~~~~~~l~~~~~ 364 (364)
T d1w0pa3 321 VNGASAYSDIYQLDSENAIVIVETDNSNMRILRMPITLLKQKLT 364 (364)
T ss_dssp CSSBCCSEEEEECSSSEEEEEEECGGGCEEEEEEEHHHHGGGTC
T ss_pred CCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEEHHHHHCCCC
T ss_conf 28997787327928998999999499838999987999521059
|
| >d2jera1 d.126.1.6 (A:2-365) Agmatine iminohydrolase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Porphyromonas-type peptidylarginine deiminase domain: Agmatine iminohydrolase species: Enterococcus faecalis [TaxId: 1351]
Probab=100.00 E-value=0 Score=27410.07 Aligned_cols=1 Identities=0% Similarity=0.503 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~tP~~~g~rmPaEwep~~~~~l~wP~~~~~w~~~~~~~~~~~~~i~~~ia~~e~V~v~~~~~~~~~~~~~~~~~ 80 (364)
T d2jera1 1 AKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPE 80 (364)
T ss_dssp CCBCCSCCHHHHTCBCCCTTSCEEEEEEECCCCTTTSGGGGHHHHHHHHHHHHHHHTTSCEEEEECTTTHHHHHHHSCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCC
T ss_conf 98456899111387748995500328997689985204677999999999999985887399997928999999757566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 v~~~~~~~dD~W~RD~GPi~v~~~~g~~~~vdf~FN~wG~k~~~~~~~~~~D~~~~~~ia~~~~~~~~~~~~lvlEGG~i 160 (364)
T d2jera1 81 ITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSF 160 (364)
T ss_dssp SEEEECCCSSSCHHHHSCEEEECTTSCEEEEEEECCTTTHHHHCSSSCCTTGGGHHHHHHHHHTCCEEEEEEEECCGGGE
T ss_pred EEEEECCCCCHHHHCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCE
T ss_conf 49999368875764551389991677567633664687655555555410278999999998366544665737748966
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~dG~GtlltTe~~ll~~nRNp~ls~~~ie~~Lk~~LGv~~viwl~~gl~~DdTdGHID~~arFi~~~~il~~~~~d~~~ 240 (364)
T d2jera1 161 HVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNS 240 (364)
T ss_dssp EECSSSEEEEEHHHHTSTTTCTTSCHHHHHHHHHHHHTCSEEEEECCCSCTTTTSSCGGGTEEEEETTEEEEECCCCTTS
T ss_pred EECCCCEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCC
T ss_conf 97799639975455514578999899999999999869863677658755677777754448994799569984388878
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~L~~~~da~G~~~~i~~lp~P~~~~~~~~~~~~~~~~~~~~~~~g~~l~aSY~Nfli~N~~VivP~fg~ 320 (364)
T d2jera1 241 PFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGD 320 (364)
T ss_dssp TTHHHHHHHHHHHHTCBCTTCCBCEEEEECCCSSCEECCTTSCCCCCTTSCCCCTTCEECCCTTCCEEETTEEEEEECSC
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEECCCC
T ss_conf 35799999999997656534898558862689742333333344534575435689886202578999999999902798
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------8
Q 001511 467 -------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~D~~Al~~l~~~fP~r~Vv~I~~~~i~~~gG~iHCiT~q~P~~ 364 (364)
T d2jera1 321 ENDRLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHXITQQEPKR 364 (364)
T ss_dssp TTHHHHHHHHHHHSTTSEEEEEECHHHHTTTCCTGGGCEEEECC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCCCHHHHCCCCC
T ss_conf 77899999999888899799971089875698014463127999
|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin heavy chain-like protein species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=0 Score=27409.97 Aligned_cols=1 Identities=0% Similarity=-0.294 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 rIkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~v~~lv~~~l~G~n~~i~a 80 (364)
T d1sdma_ 1 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVDGYNVCIFA 80 (364)
T ss_dssp CCEEEEEECCCCHHHHHTTCCBCEEECSTTEEEEECSSSSEEEEECSEEECTTCCHHHHHHTTTHHHHHHHTTCEEEEEE
T ss_pred CEEEEEECCCCCHHHCCCCCCCEEEECCCCEEEECCCCCCCEEEECCEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 96999992789936622589875996799758735789985477788564999998999998999999996698503552
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 YGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~~~~~~~~~~ 160 (364)
T d1sdma_ 81 YGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMV 160 (364)
T ss_dssp ECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTTSCCCCCEEEECTTSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 23478776201656766551367899998865531034655369999888723632233576545554433133146760
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~~~~~~~~kl~~vDLAGsEr~~~~~~ 240 (364)
T d1sdma_ 161 SVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGS 240 (364)
T ss_dssp EEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCSCCCC---
T ss_pred CCCCCEEEEECCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEECHHHCCCCCCCCC
T ss_conf 20353000117788978986406600044534354103336359999999703676503567998404100352001466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~g~~~~E~~~iN~SL~~L~~vi~aL~~~~~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eTl~TL~fa~~ak 320 (364)
T d1sdma_ 241 AGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVR 320 (364)
T ss_dssp ------CCCTTCHHHHHHHHHHHHHHHTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 67502332335643206899999997499757730112138878634999509999996987001899999999999984
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------8
Q 001511 467 -------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------~ 467 (1064)
+
T Consensus 321 ~i~n~p~~n~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~l~~e 364 (364)
T d1sdma_ 321 SIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364 (364)
T ss_dssp TCCCCCCCCEECHHHHHHHTTTTCC-----------CCEECCCC
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
T ss_conf 20667835579899999999999999998744027799997559
|
| >d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Arginase/deacetylase superfamily: Arginase/deacetylase family: Histone deacetylase, HDAC domain: Histone deacetylase 8, HDAC8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27409.39 Aligned_cols=1 Identities=100% Similarity=0.769 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~pvyiy~~~~~~~~~~hP~~P~R~~~~~~ll~~~gl~~~~~~v~p~~At~~el~~vHs~~Yi~~l~~~~~~~~~~~~~~ 80 (364)
T d1t64a_ 1 LVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDS 80 (364)
T ss_dssp CCCEEECCHHHHHHHTCSSSSCCHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHCSSCCTTT
T ss_pred CCCEEEECHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCHH
T ss_conf 98869969888416799898829999999999974996688896889799899998299999999998604026444112
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~l~~d~p~~~~~~~~~~~~aG~~l~A~~~~~~g~~~~a~~~~gg~HHA~~~~a~GFC~~NdvaiA~~~~~~~~~RV~ 160 (364)
T d1t64a_ 81 IEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERIL 160 (364)
T ss_dssp TTTTCBTTBCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTCSCEE
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCEEE
T ss_conf 01067888887703999999985028999999875986500345754464333444454555689999999985103079
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 iiD~DvHhGnGtq~iF~~d~~V~~~SiH~~~~~~~Pgtg~~~e~G~g~g~~~~~NvPL~~g~~d~~y~~~~~~~i~~~~~ 240 (364)
T d1t64a_ 161 YVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQ 240 (364)
T ss_dssp EEECSSSCCHHHHHHHTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98523577776044420687544533345567778898873105876445632334125565738999999976678862
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~f~Pd~IvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~p~~~~~~GGY~~~~~ar~w~~~~~~l~g~~~~~~~P~ 320 (364)
T d1t64a_ 241 AFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPD 320 (364)
T ss_dssp HHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHHHHHHHHHHHHHHHTCCCCSBCCC
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 57998899989714778997778727998999999999835998799979888878999999999999859988866898
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------8
Q 001511 467 -------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~~~~p~~~~~~~~~~~~~~n~~~~~~~i~~~i~~~l~~~~ 364 (364)
T d1t64a_ 321 HEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVV 364 (364)
T ss_dssp CTTGGGGTTTCBSCCCCCSCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 50155409973136686656566999999999999999987429
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=100.00 E-value=0 Score=27409.39 Aligned_cols=1 Identities=0% Similarity=-0.127 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~pLFsP~~ig~~~LkNRiv~apm~~~~a~~g~p~~~~~~~y~~rA~gGgliite~~~V~~~g~~~~~~~~l~~d~~ 80 (364)
T d1icpa_ 1 QVDKIPLMSPCKMGKFELCHRVVLAPLTRQRSYGYIPQPHAILHYSQRSTNGGLLIGEATVISETGIGYKDVPGIWTKEQ 80 (364)
T ss_dssp CCCCCGGGSCEEETTEEESCSEEECCCCCCCCGGGSCCHHHHHHHHHTCCTTCEEECCCEECSGGGCCSTTCCBCSSHHH
T ss_pred CCCCCCCCCCCEECCEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCEEECCCCCCCCCCCEECHHHH
T ss_conf 99898899972489999678427524489858999797999999999983964999710788873357999853134344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 i~~~k~l~~~ih~~g~~~~~QL~H~Gr~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f 160 (364)
T d1icpa_ 81 VEAWKPIVDAVHAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEF 160 (364)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 45677888886237882577640477554554445788875323456531112346565678887311066799999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~aA~rA~~AGfDgVeIH~ahGyLl~QFlSp~tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~ 240 (364)
T d1icpa_ 161 RVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEA 240 (364)
T ss_dssp HHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTC
T ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHCEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
T ss_conf 99999999839986898305762131200110077675444204320167898765420124886466886043224677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 g~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~vi~~g~~~~~~ae~~l~~g~aD~V~~ 320 (364)
T d1icpa_ 241 GDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAY 320 (364)
T ss_dssp CCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCSCEEEESSCCHHHHHHHHHTTSCSEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCEEHH
T ss_conf 67516777889987752032245665158655455455447889999986478789978989999999998699765056
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------8
Q 001511 467 -------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------~ 467 (1064)
+
T Consensus 321 gR~~iadPd~~~k~~~g~pi~~~~~~~~~~~~~~~g~~~~p~~~ 364 (364)
T d1icpa_ 321 GRLFISNPDLPKRFELNAPLNKYNRDTFYTSDPIVGYTDYPFLE 364 (364)
T ss_dssp SHHHHHCTTHHHHHHHTCCCCCCCGGGSSCCCSSTTTTCSCCCC
T ss_pred HHHHHHCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf 79999790499999709998988611342799998848798889
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=0 Score=27407.76 Aligned_cols=1 Identities=100% Similarity=1.201 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~~tP~ei~~~L~~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvG 80 (364)
T d1um8a_ 1 LLSYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSG 80 (364)
T ss_dssp CCSCCCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSS
T ss_pred CCCCCCCHHHHHHHHCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 97779887999999589623808999999999998998887788764044443311112233456787532441899863
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 KTElAk~LA~~~~~~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~ 160 (364)
T d1um8a_ 81 KTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSG 160 (364)
T ss_dssp HHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------C
T ss_pred HHHHHHHHHHHCCCCEEEHHHHHCCCCHHHHHHHCCCHHHHHHHCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 78999999864435331112220144316676312103445420245899865463010166653134544555512214
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (364)
T d1um8a_ 161 EGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILH 240 (364)
T ss_dssp HHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGG
T ss_pred HHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 38898645540586122587778767764168996113455411131014566543014454310001100124666530
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L~~td~a~~~la~~g~d~~~G 320 (364)
T d1um8a_ 241 LVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTG 320 (364)
T ss_dssp GCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCT
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCC
T ss_conf 24578776530079999872301557402099999999879999999999998757927999899999999956587778
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------8
Q 001511 467 -------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------~ 467 (1064)
.
T Consensus 321 AR~L~riie~~l~~~~f~~p~~~~~~v~I~~~~V~~~~~~~~i~ 364 (364)
T d1um8a_ 321 ARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLIIA 364 (364)
T ss_dssp GGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSCCEEEC
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHCCCCCCEEEC
T ss_conf 36789999999999855587789999997778867998881439
|
| >d1kbla1 c.1.12.2 (A:510-873) Pyruvate phosphate dikinase, C-terminal domain {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate phosphate dikinase, C-terminal domain domain: Pyruvate phosphate dikinase, C-terminal domain species: Clostridium symbiosum [TaxId: 1512]
Probab=100.00 E-value=0 Score=27407.50 Aligned_cols=1 Identities=0% Similarity=1.201 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~~~~~~~~~~~~~waD~~r~~~v~aN~~~~~d~~~A~~~GAdGIGL~RTEflfl~~~~~p~~~~~~~~~~~e~~~~ 80 (364)
T d1kbla1 1 IETQEASVSGSFERIMVWADKFRTLKVRTNADTPEDTLNAVKLGAEGIGLCRTEHMFFEADRIMKIRKMILSDSVEAREE 80 (364)
T ss_dssp CCEECCCCCHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHTTCCSEEEECCTHHHHSHHHHHHHHHHHHCCSHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHH
T ss_conf 99768887448999999877467107998289999999999769971548888998727876540566663367266799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~q~~~y~~i~~~~~g~pvtiRtlD~g~dk~~p~~~~~~~~~~~~lg~~~~~~~~~~~~~~E~NP~LG~RGiR~ 160 (364)
T d1kbla1 81 ALNELIPFQKGDFKAMYKALEGRPMTVRYLDPPLHEFVPHTEEEQAELAKNMGLTLAEVKAKVDELHEFNPMMGHRGCRL 160 (364)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTCCEEEECCCSCGGGGSCCSHHHHHHHHHHHTCCHHHHHHHHHHHCCSCGGGSSCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99998887877899999860898679851568864467873156899998739987887665424455784224433213
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~l~~p~lf~~QlrAilrA~~~~~~~~g~~~~~~Im~Pmv~~~~E~~~~k~~i~~~~~~l~~~~~~~~~~~iG~MiE~Psa 240 (364)
T d1kbla1 161 AVTYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKKELKFVKDVVVEVAEQVKKEKGSDMQYHIGTMIEIPRA 240 (364)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEECSHHH
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHH
T ss_conf 42665236888999999999978843875431441131304999999998888899997530387766148775011599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 al~~d~~~~~vDF~SIGTNDLtQy~la~dRd~~~~~l~~y~~~~i~~~dP~~~~~~~av~~lI~~~~~~~~~~~~~i~vs 320 (364)
T d1kbla1 241 ALTADAIAEEAEFFSFGTNDLTQMTFGFSRDDAGKFLDSYYKAKIYESDPFARLDQTGVGQLVEMAVKKGRQTRPGLKCG 320 (364)
T ss_dssp HHTHHHHTTTCSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHTTSCSSCTTTSCCTTTHHHHHHHHHHHHHHHCTTCEEE
T ss_pred HHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 97189987327679963306878887433253255665554420022375104406999999999999999737998699
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------8
Q 001511 467 -------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------~ 467 (1064)
.
T Consensus 321 iCGE~asdp~~~~~L~~lGi~~lS~sp~~vp~~r~a~aqa~~~~ 364 (364)
T d1kbla1 321 ICGEHGGDPSSVEFCHKVGLNYVSCSPFRVPIARLAAAQAALNN 364 (364)
T ss_dssp ECSGGGGSHHHHHHHHHTTCSEEEECGGGHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 71731159999999998699989978046699999999987439
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=0 Score=27407.17 Aligned_cols=1 Identities=100% Similarity=1.533 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 lslddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~ 80 (364)
T d1omwa3 1 LTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD 80 (364)
T ss_dssp CCSTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSS
T ss_pred CCHHHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECC
T ss_conf 97776851018842889099999999999799999984587542667999999999999985089985889999999899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~ 160 (364)
T d1omwa3 81 KLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK 160 (364)
T ss_dssp EEEEEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEECSSS
T ss_pred EEEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEECCCCCEEEEEECEEEECCCC
T ss_conf 88999991489838999873255327899999999999999999779622044422167858896798220102333788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li 240 (364)
T d1omwa3 161 KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLL 240 (364)
T ss_dssp CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSCCCCCCSSSCHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 64331134554216876038999844104677899999985999888899899999998604688878877899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~L~~dP~~R~t~~~~~a~eil~Hp~f~~i~~~~~~~~~~~~p~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 320 (364)
T d1omwa3 241 EGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPRGEVNAADAFDIGSFDEEDTKGIKLLDSDQEL 320 (364)
T ss_dssp HHHTCSSTTTSTTTSSSTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCC--------------------CCCCSSSSGG
T ss_pred HHHCCCCHHHHCCCCCCCHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHH
T ss_conf 99856698880887435799997491023789879962889959379988888687454665881011379889757899
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------8
Q 001511 467 -------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~q~~~ 364 (364)
T d1omwa3 321 YRNFPLTISERWQQEVAETVFDTINAETDRLEARKKTKNKQLGH 364 (364)
T ss_dssp GTTCCEECHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCC
T ss_conf 84687657637788888876644526578888642271633389
|
| >d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Glycerol dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=27404.57 Aligned_cols=1 Identities=0% Similarity=-1.324 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~m~~~~~~P~rii~G~gal~~l~~~l~~~g~r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~v~~~~~~~~~i~~~~~~~ 80 (364)
T d1kq3a_ 1 HMITTTIFPGRYVQGAGAINILEEELSRFGERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQIFGGECSDEEIERLSGLV 80 (364)
T ss_dssp CCCBCCCCCSEEEEETTGGGGHHHHHHTTCSEEEEEECHHHHHHTTCTTGGGGCSSSEEEEEECCSSCBHHHHHHHHTTC
T ss_pred CCCCCEECCCCEEEECCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 99755778978798059999999999973993899989865564799999998886698699618989807999999975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~D~IIavGGGs~~D~aK~ia~~~~~P~I~IPTTa~tgse~t~~avi~~~~~~~k~~~~~~~~P~~viiDp~l~~t~P 160 (364)
T d1kq3a_ 81 EEETDVVVGIGGGKTLDTAKAVAYKLKKPVVIVPTIASTDAPCSALSVIYTPNGEFKRYLFLPRNPDVVLVDTEIVAKAP 160 (364)
T ss_dssp CTTCCEEEEEESHHHHHHHHHHHHHTTCCEEEEESSCCCSCTTSSEEEEECTTSCEEEEEECSSCCSEEEEEHHHHHHSC
T ss_pred HCCCCEEEEECCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCEEEECCHHHHHHH
T ss_conf 20576899813675410101223334210124225433332446513786326775311200244533887716666435
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 240 (364)
T d1kq3a_ 161 ARFLVAGMGDALATWFEAESCKQKYAPNMTGRLGSMTAYALARLCYETLLEYGVLAKRSVEEKSVTPALEKIVEANTLLS 240 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCBCTTSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88886217888653777765554214001015555568999999999999988887777640337999999999877875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 g~~~~~~~~~~~H~~~~~~~~~~~~~~~~HG~~va~~~~~~~~~~~~~~~~~~~i~~l~~~lglP~~L~elGi~~~~~~~ 320 (364)
T d1kq3a_ 241 GLGFESGGLAAAHAIHNGLTVLENTHKYLHGEKVAIGVLASLFLTDKPRKMIEEVYSFCEEVGLPTTLAEIGLDGVSDED 320 (364)
T ss_dssp HHHHHHHCCCHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTCCCSGGGGTCTTCCHHH
T ss_pred HCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHH
T ss_conf 34213445566520002254523764202107899889999875406799999999999985999989992999998999
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------8
Q 001511 467 -------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------~ 467 (1064)
-
T Consensus 321 l~~ia~~a~~~~~~~~~~P~~~t~edi~~il~~A~~~~~~~~~~ 364 (364)
T d1kq3a_ 321 LMKVAEKACDKNETIHNEPQPVTSKDVFFALKAADRYGRMRKNL 364 (364)
T ss_dssp HHHHHHHHTCTTSGGGGSSSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999998727775658996899999999999999998875579
|
| >d1us3a2 c.1.8.3 (A:243-606) Xylanase 10c {Cellvibrio japonicus [TaxId: 155077]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Xylanase 10c species: Cellvibrio japonicus [TaxId: 155077]
Probab=100.00 E-value=0 Score=27404.23 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~l~~~~~~~f~~G~av~~~~~~~~~~~~~~~~~~~~~~~fn~~t~eN~mKW~~iep~~G~~nf~~~D~~v~~a 80 (364)
T d1us3a2 1 AYSANVDHLRDLAPSDFPIGVAVSNTDSATYNLLTNSREQAVVKKHFNHLTAGNIMKMSYMQPTEGNFNFTNADAFVDWA 80 (364)
T ss_dssp CCCCCCSCGGGGCSSSCCEEEEEBCTTCTTTBTTTCHHHHHHHHHHCSEEEESSTTSHHHHCSBTTBCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCEEEECCCCCHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 97564358999703689478885276555422246778999999768823165467768855889836838999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~gi~v~GH~lvW~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~vv~ry~~~G~I~~WDVvNEp~~~~~~~~~~~~~~~~ 160 (364)
T d1us3a2 81 TENNMTVHGHALVWHSDYQVPNFMKNWAGSAEDFLAALDTHITTIVDHYEAKGNLVSWDVVNEAIDDNSPANFRTTDSAF 160 (364)
T ss_dssp HHTTCEEEEEEEEECCGGGSCHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCBCSSSSCCBCCTTCHH
T ss_pred HHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCHH
T ss_conf 98889899950687865578643235786579999999999999987524688357999860444578876556666437
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~g~~~~~i~~Af~~Ar~~~p~a~l~~ndy~~~~~~~~~~~~~~~v~~l~~~g~~idgiG~Q~H~~~~~p~~~~i~~~ 240 (364)
T d1us3a2 161 YVKSGNSSVYIERAFQTARAADPAVILYYNDYNIEQNNAKTTKMVDMVKDFQARSIPIDGVGFQMHVCMNYPSIANISAA 240 (364)
T ss_dssp HHHTTSCSHHHHHHHHHHHHHCTTSEEEEEESSTTSCSHHHHHHHHHHHHHHHTTCCCCEEEECCEEESSCSCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 77708833999999999998640343211565334663134678999999986899655532410025799998999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 l~~~~~~g~~I~iTEldi~~~~~~~~~~~~~~~~~~~~~~~~~QA~~~~~~~~~~~~~~~~~~~~~vt~Wg~~D~~sW~~ 320 (364)
T d1us3a2 241 MKKVVDLGLLVKITELDVAVNQPHCDAYPANKINPLTEAAQLAQKKRYCDVVKAYLDTVPVNQRGGISVWGTTDANTWLD 320 (364)
T ss_dssp HHHHHTTTCEEEEEEEEEESSCTTSTTTTTTCCCSCCHHHHHHHHHHHHHHHHHHHHHSCGGGEEEEEESCSBGGGCHHH
T ss_pred HHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 99998549905887404741467665444444688875899999999999999998455623455699815874876556
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------8
Q 001511 467 -------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~~~~~~~~~~~lL~d~d~~pKPAy~av~~~L~g~~~~~~~ 364 (364)
T d1us3a2 321 GLYREQFEDEKISWPLLFDNNYNDKPALRGFADALIGTQCTNTH 364 (364)
T ss_dssp HHTTTTTTTCCCCCCSSBCTTSCBCHHHHHHHHHHHTCCCCSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 87777666666687866889989988999999997799887889
|
| >d1oc7a_ c.6.1.1 (A:) Cellobiohydrolase II (Cel6) {Humicola insolens, Cel6a [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycosyl hydrolases family 6, cellulases family: Glycosyl hydrolases family 6, cellulases domain: Cellobiohydrolase II (Cel6) species: Humicola insolens, Cel6a [TaxId: 34413]
Probab=100.00 E-value=0 Score=27403.27 Aligned_cols=1 Identities=0% Similarity=-1.490 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~p~~gNPf~g~~~yvnP~~~~~v~~~a~~~~~d~~~~a~~~~va~~Pta~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 80 (364)
T d1oc7a_ 1 APYNGNPFEGVQLWANNYYRSEVHTLAIPQITDPALRAAASAVAEVPSFQWLDRNVTVDTLLVQTLSEIREANQAGANPQ 80 (364)
T ss_dssp CCCCSCTTTTCEECCCHHHHHHHHHTTGGGCCCHHHHHHHHHHTTSCCCEEECSGGGTTTHHHHHHHHHHHHHHTTCSSC
T ss_pred CCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99789988898332474077899999873468988999999985378279711477777522778999999987214788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~lVvY~iP~RDC~a~as~Ge~~~~~~g~~~y~~Yid~I~~~~~~~~~~~~vvIlEPDsL~nlvt~~~~~~c~~~~~~ 160 (364)
T d1oc7a_ 81 YAAQIVVYDLPDRDCAAAASNGEWAIANNGVNNYKAYINRIREILISFSDVRTILVIEPDSLANMVTNMNVPKCSGAAST 160 (364)
T ss_dssp EEEEEEECCCTTCSTTSSSCCCCCCGGGTHHHHHHHHHHHHHHHHHHTTTSCEEEEECTTSTHHHHHCTTSHHHHHHHHH
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCHHHHHHHHH
T ss_conf 51389994799987320004897545766468899999999999975688634999777622223306880666778999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~i~yAi~~l~~pnv~vYlDaGhsgWLgw~~n~~~~a~~~a~~l~~ag~~~~vrGFatNvsNy~~~~~~~~~~~~~~n 240 (364)
T d1oc7a_ 161 YRELTIYALKQLDLPHVAMYMDAGHAGWLGWPANIQPAAELFAKIYEDAGKPRAVRGLATNVANYNAWSVSSPPPYTSPN 240 (364)
T ss_dssp HHHHHHHHHHHTCCTTEEEEEECCCTTTTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESTTCCCCSSCSSCCGGGTTC
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 99999999997169973899978877666760001268999999998647864343378704477666667887544578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~dE~~y~~~l~~~l~~~G~~~~fvIDTsRNG~gp~~~~~~g~WCN~~GaglG~rPt~~t~~~~vDA~lWIKpPGESDG 320 (364)
T d1oc7a_ 241 PNYDEKHYIEAFRPLLEARGFPAQFIVDQGRSGKQPTGQKEWGHWCNAIGTGFGMRPTANTGHQYVDAFVWVKPGGECNG 320 (364)
T ss_dssp SCCSHHHHHHHHHHHHHHTTCCCEEEEECTTCSSSSCSCSSTTCCSSBSSCCCCSCCBSCCCCTTEEEEECCSCTTBCSC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
T ss_conf 76259999999999997458887448870467889877778888779999826889978999877677887588847788
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------8
Q 001511 467 -------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~~~~~D~~C~~~~a~~~aP~AG~Wf~~~f~~Lv~NA~P~f 364 (364)
T d1oc7a_ 321 TSDTTAARYDYHCGLEDALKPAPEAGQWFNEYFIQLLRNANPPF 364 (364)
T ss_dssp CCCTTSTTCCGGGGSTTBCSSCCSTTSBCHHHHHHHHHTCSSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 88876666676667655789998677752999999997268999
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=27403.20 Aligned_cols=1 Identities=0% Similarity=-1.290 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~n~~~~~~~~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~ 80 (364)
T d2e7ja1 1 DFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMH 80 (364)
T ss_dssp CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf 97566841027968999999999984477510034666411135708999999999998695979997969999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~ 160 (364)
T d2e7ja1 81 SLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVK 160 (364)
T ss_dssp HHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHH
T ss_pred HHHCCCCEEEEECCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEECCH
T ss_conf 98679967974046431110688851211798630356433257999976655410467716999605779984552311
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (364)
T d2e7ja1 161 KIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGC 240 (364)
T ss_dssp HHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTC
T ss_pred HHEECCCCCCCHHHCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 00000023321111144323444320133332213530331012788888999988799999985156657663333310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (364)
T d2e7ja1 241 TARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRE 320 (364)
T ss_dssp CCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHTTCEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHH
T ss_conf 03235799999999988999999987777788999999975986457888876559983541477789753256677988
Q ss_pred -------------------------------------------E
Q ss_conf -------------------------------------------8
Q 001511 467 -------------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------------~ 467 (1064)
+
T Consensus 321 l~~~~~~~~~~g~~~~~~~~~~~~t~edid~~~~~l~ei~~~ys 364 (364)
T d2e7ja1 321 LKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKYS 364 (364)
T ss_dssp HHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHCCCCEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 87658713457876269980567999999999999999999759
|
| >d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Nitric oxide (NO) synthase oxygenase domain superfamily: Nitric oxide (NO) synthase oxygenase domain family: Nitric oxide (NO) synthase oxygenase domain domain: Nitric oxide (NO) synthase oxygenase domain species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=27340.33 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~s~~e~l~~eA~~Fi~~~y~e~~~~~~~~~Rl~ev~~eI~~tGtY~~T~eEL~~GAk~AWRNs~RCIGRl~W~~L~V~D~ 80 (363)
T d1m7va_ 1 GSHMEILWNEAKAFIAECYQELGKEEEVKDRLDSIKSEIDRTGSYVHTKEELEHGAKMAWRNSNRCIGRLFWNSLNVIDR 80 (363)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTCTTCSCGGGGGGCEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEC
T ss_conf 97678999999999999998648632489999999999974177438999998878998714552323002275725656
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 R~v~t~~~m~eal~~Hl~~AtN~G~Ir~~ITVF~p~~~~~~~~RIwN~QLirYAGY~~dg~iiGDP~~vefT~~c~~lGW 160 (363)
T d1m7va_ 81 RDVRTKEDVRDALFHHIETATNNGKIRPSITIFPPEEKGEKQVEIWNHQLIRYAGYESDGERIGDPASRSLTAACEQLGW 160 (363)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHGGGSCCCEEEECCCCSSSCCSEEECCSBSSCBCEEC--CCCEECGGGHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 68999899999999999997079987623898078778999865644888866175889983689526899999997599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~t~FDvLPlviq~~g~~~P~~feiP~~lvlEV~i~HP~~~~f~~LgLkWyavP~iS~M~L~iGGi~y~aaPFNGWYM 240 (363)
T d1m7va_ 161 RGERTDFDLLPLIFRMRGDEQPVWYELPRSLVIEVPITHPDIEAFSDLELKWYGVPIISDMKLEVGGIHYNAAPFNGWYM 240 (363)
T ss_dssp CCCCCTTCBCCEEEEETTCSSCEEECCCTTTCCEEECCCSSCGGGGGGCCEEESCCEECSCEEEETTEEESCCCEECCEE
T ss_pred CCCCCCCCEEEEEEEECCCCCCEEECCCHHHEEEECCCCCCCHHHHHCCCCEEECHHHCCCHHHCCCEEECCCCCCCCEE
T ss_conf 99899888403899967999981331887783675157989755776698632032332240310888542456343422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~TEIgaRnl~D~~RYn~L~~VA~~mGlDt~~~~sLWkDrAlvElN~AVLhSF~~~gVtivDHHtas~~F~~f~~~E~~~~ 320 (363)
T d1m7va_ 241 GTEIGARNLADEKRYDKLKKVASVIGISTNYNTDLWKDQALVELNKAVLYSYKKQGVSIVDHHTAASQFKRFEEQEEEAG 320 (363)
T ss_dssp HHHHHTTTTTCTTTTCCHHHHHHHTTCCCSCGGGTHHHHHHHHHHHHHHHHHHHHTCCEECHHHHHHHHHHHHHHHHHTT
T ss_pred EHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHC
T ss_conf 00230244555777774799999948888997215778899999999999999879647052788999999999999818
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------8
Q 001511 467 ------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------~ 467 (1064)
+
T Consensus 321 r~~~gdW~WlvPP~S~s~tpvfH~~~~~~~~~Pnf~yq~~pw~ 363 (363)
T d1m7va_ 321 RKLTGDWTWLIPPISPAATHIFHRSYDNSIVKPNYFYQDKPYE 363 (363)
T ss_dssp CCCBCCHHHHSCSSSGGGSGGGGSCCBCCCCSSEEECCCCTTC
T ss_pred CCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 9999984377788864344277776544445887502788899
|
| >d1zaia1 c.1.10.1 (A:1-363) Fructose-1,6-bisphosphate aldolase {Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId: 9986]
Probab=100.00 E-value=0 Score=27335.23 Aligned_cols=1 Identities=0% Similarity=-1.457 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~e~~~eL~~~a~~~~~~GKGilAADeS~gT~~Krl~~igventeenr~~yR~~lftsp~f~~~~IsGvILfe 80 (363)
T d1zaia1 1 PHSHPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFH 80 (363)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHTCTTCEEEEECCCHHHHHHHHHTTTCCCCHHHHHHHHHHHHTCCGGGTTTEEEEEECH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHCCEEEEECCH
T ss_conf 99877689999999999999980589869982689983777898769999778999999987148512205446897648
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 eTl~q~~~~g~~~~~ll~~kGIvPgIKVDkGl~~l~~~~ge~~t~gLd~L~~rl~~y~~~Ga~faKwRsVi~i~~~~ps~ 160 (363)
T d1zaia1 81 ETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIGEHTPSA 160 (363)
T ss_dssp HHHTCBCTTSCBHHHHHHHTTCEEEEECCCCEEECTTSSSCEEECCCTTHHHHHHHHHHTTCCEEEEEEEECCSSSCSCH
T ss_pred HHHHHHCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCC
T ss_conf 87511225998622566515854467347653336788644135662239999999986686513112102235677740
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~I~~na~~laryA~i~q~~GLVPIVEPEVlidg~h~~e~~~~vt~~vl~~v~~~l~~~~V~leg~lLKpnMv~~g~~~~ 240 (363)
T d1zaia1 161 LAIMENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACT 240 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEECCCCCCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 24899899999999999865842002353442476315788999999999999876412323467501355666754355
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~va~~Tv~~l~~~vp~~VpgIvfLSGGqS~eeAt~~LnamNk~~~~~pW~lsfSfgRALQ~~~lk~W~g~~~n~ 320 (363)
T d1zaia1 241 QKYSHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENL 320 (363)
T ss_dssp SCCCHHHHHHHHHHHHHTTSCTTSCEEEECCTTCCHHHHHHHHHHHHHCSSCCCSEEEEEESHHHHHHHHHHHTTCGGGH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCH
T ss_conf 54886675566555654058977772110578765889999999986036899976999751766489999847882258
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------8
Q 001511 467 ------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------~ 467 (1064)
-
T Consensus 321 ~aaQ~~~~~ra~~Ns~A~~G~y~~~~e~~~~~~~~l~v~~~~y 363 (363)
T d1zaia1 321 KAAQEEYVKRALANSLACQGKYTPSGQAGAAASESLFISNHAY 363 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCSSSCCCCCCCCCCSCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999999985468765850787776754455520067659
|
| >d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27334.44 Aligned_cols=1 Identities=0% Similarity=-0.692 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 WLAEHMlIlgvt~P~g~~~yvaaAFPSaCGKTnlAMl~p~~pGwkv~~vGDDiawi~~~~dG~l~AiNPE~G~FGVapgt 80 (363)
T d1khba1 1 WLAEHMLVLGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGT 80 (363)
T ss_dssp CEEESCEEEEEECTTSCEEEEEEECCTTSCHHHHHTCCCCSTTCEEEEEESSCEEEEECTTSBEEEECCCSEEEEECTTC
T ss_pred CHHHHHHHHEECCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCEEEECCCCCCCCCCCCC
T ss_conf 92352343032489997799987567443421088718899996778941746777787889678536655753447898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~tnp~am~~l~~~~IFTNValt~DG~vwWeG~~~~~~~~~~~~~w~g~~~~~~~~~paaHpNsRFt~p~~qcp~id~~ 160 (363)
T d1khba1 81 SVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPLASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAA 160 (363)
T ss_dssp CTTTCHHHHHHTTBSCEEESCEEETTSCEECTTCCCCCCTTCCEECTTSSEECTTSSSCSSCTTCEEEEEGGGCTTBCTT
T ss_pred CCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf 98889999997536852443567789974678898889877524678899888888997778875202137669866843
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 wedP~GVpIsaiiFGGRr~~t~PlV~ea~~W~hGV~~GAtm~SE~TAAa~g~~g~vrrdPmAMlpF~gyn~gdY~~hWL~ 240 (363)
T d1khba1 161 WESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHWLS 240 (363)
T ss_dssp TTCTTCEEEEEEEEECCCSSSCCSEEECSSHHHHHHHHHTCEEEC--------CCEEECGGGCTTTCSSCHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCEEEEEEEECHHHHHHHHCCCCCEECCCHHHHHHCCCCHHHHHHHHHH
T ss_conf 35987514778997565688887248731466607873210104567764146864318066543328898999999876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~g~~~~~k~PkIF~VNWFrKd~~GkFLWPGfGeN~RVLkWI~~Rv~G~~~A~eTPIG~vP~~~dLd~~GL~~~~~~el~~ 320 (363)
T d1khba1 241 MAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDGKASTKLTPIGYIPKEDALNLKGLGHINMMELFS 320 (363)
T ss_dssp GGGSTTCBCCEEEEECSCCBCTTSCBSSCCGGGGHHHHHHHHHHHTC--CEEEETTEEEECTTCSCCTTCCCCCHHHHTC
T ss_pred HHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHC
T ss_conf 51246567984799976534588886578863156999999998649755201676312683446866788666999838
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------8
Q 001511 467 ------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------~ 467 (1064)
-
T Consensus 321 vd~~~w~~E~~~i~~~f~~~~g~~LP~el~~eL~~Lk~RL~~m 363 (363)
T d1khba1 321 ISKEFWDKEVEDIEKYLVDQVNADLPCEIEREILALKQRISQM 363 (363)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 7999999999999999998733305099999999999999649
|
| >d1zq1a2 c.88.1.1 (A:76-438) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Glutaminase/Asparaginase superfamily: Glutaminase/Asparaginase family: Glutaminase/Asparaginase domain: Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD species: Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=0 Score=27332.66 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~~lPkI~ii~TGGTIa~~~~~~~~~~~p~~~~~~l~~~~p~~~~~~~~~~~~~~~~dS~~~~~~~~~ 80 (363)
T d1zq1a2 1 KPEVHFEALIEGKPGLPEVTIIGTGGTIASRIDYETGAVYPAFTAEELAKALPEIFEVANVKPKLLFNIFSEDMKPKHWV 80 (363)
T ss_dssp CCCCCCCSSCCCCTTCCEEEEEECSCCCCEEEETTTTEEEECCCHHHHHHHCGGGGGTSEEEEEECCCCCGGGCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHCCEEEEEEECCCCCHHCCHHHHH
T ss_conf 98644345688999999799997787314046687783378799999998575455125267999633896247999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~l~~~i~~~~~~~d~G~VvtHGTDTl~eTA~~L~~~l~~~~kPVVlTGa~~P~~~~~sDg~~NL~~Al~~A~~~~~~v~v 160 (363)
T d1zq1a2 81 KIAHEVAKALNSGDYGVVVAHGTDTMGYTAAALSFMLRNLGKPVVLVGAQRSSDRPSSDAAMNLICSVRMATSEVAEVMV 160 (363)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCSSSHHHHHHHHHHHEESCCSCEEEECCSSCTTSTTCSHHHHHHHHHHHHTSSBCSEEE
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99999998632777737983587739999999999724899638996334135677751077899999998565666326
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~i~~a~~v~K~~t~~~~aF~sp~~~pLg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~il~~~pG 240 (363)
T d1zq1a2 161 VMHGETGDTYCLAHRGTKVRKMHTSRRDAFRSINDVPIAKIWPNGEIEFLRKDYRKRSDEEVEVDDKIEEKVALVKVYPG 240 (363)
T ss_dssp EEESSSSSSCEEEEETTSEEECBSSCSTTEEECSSCCSEEECTTSCEEESCSCCCBCCCCCCEECCCCCCCEEEEECCTT
T ss_pred EEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 75200143145532131012345655444468776744899738879862454468887534554245785799993699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~l~~~~~~g~~GiVl~g~G~Gnvp~~~~~~l~~a~~~gi~VV~~Sqc~~G~v~~~~Y~~g~~l~~~GvI~~gdlt~ 320 (363)
T d1zq1a2 241 ISSEIIDFLVDKGYKGIVIEGTGLGHTPNDIIPSIERAVEEGVAVCMTSQCIYGRVNLNVYSTGRKLLKAGVIPCEDMLP 320 (363)
T ss_dssp CCTHHHHHHHHTTCSEEEEEEBTTTBCCGGGHHHHHHHHHTTCEEEEEESSSBSCCCCSSSHHHHHHHHTTCEECTTCCH
T ss_pred CCHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHCCEEECCCCCH
T ss_conf 99999999985798369998555888856788999999747926999368787885777654437788699898899899
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------8
Q 001511 467 ------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------~ 467 (1064)
.
T Consensus 321 ekArikLm~lL~~~~~~~eI~~~f~~nl~GE~t~~~~~~~~~~ 363 (363)
T d1zq1a2 321 ETAYVKLMWVLGHTQNLEEVRKMMLTNYAGEITPYTRFDTYLR 363 (363)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHSCSSTTSCSSCBTTCSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999999859999999999971366853688766666569
|
| >d1onha_ e.3.1.1 (A:) AMPC beta-Lactamase, class C {Enterobacter cloacae, P99, cephalosporinase [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: AMPC beta-Lactamase, class C species: Enterobacter cloacae, P99, cephalosporinase [TaxId: 550]
Probab=100.00 E-value=0 Score=27330.76 Aligned_cols=1 Identities=0% Similarity=-0.261 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 p~~~~~l~~~v~~~i~~~~~~~~~pG~~v~V~~~g~~~~~~~G~~~~~~~~p~~~dT~f~iaSitK~~ta~~i~~L~e~G 80 (363)
T d1onha_ 1 PVSEKQLAEVVANTVTPLMKAQSVPGMAVAVIYQGKPHYYTFGKADIAANKPVTPQTLFELGSISKTFTGVLGGDAIARG 80 (363)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTCSEEEEEEEETTEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCC
T ss_conf 98979999999999999998389986999999999999995876006779889999978720559999999999998669
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~l~lddpv~~ylp~~~~~~~~~ITi~~LL~HtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~~~llg~i 160 (363)
T d1onha_ 81 EISLDDPVTRYWPQLTGKQWQGIRMLDLATYTAGGLPLQVPDEVTDNASLLRFYQNWQPQWKPGTTRLYANASIGLFGAL 160 (363)
T ss_dssp SCCTTSBGGGTCTTCCCGGGTTCBHHHHHHTCSSCCCSSCCTTCCSHHHHHHHHHHCCCSSCTTSEECCCHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEHHHHH
T ss_conf 62242021011100244434555065676530467544586455788999999987554148740231256410013555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ie~~tg~~~~~~~~e~i~~PLgm~~t~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~aggl~st~~Dla~~~~~~l 240 (363)
T d1onha_ 161 AVKPSGMPYEQAMTTRVLKPLKLDHTWINVPKAEEAHYAWGYRDGKAVRAVRVSPGMLDAQAYGVKTNVQDMANWVMANM 240 (363)
T ss_dssp HTGGGTSCHHHHHHHHTTTTTTCTTEESSCCGGGGGGBCCEEETTEEECCCCCCSSTTHHHHHCCEECHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCEEECHHHHHHHHHHHH
T ss_conf 56404997004457888861696421446870014652136665974541011024445656614417999999999860
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~G~ 320 (363)
T d1onha_ 241 APENVADASLKQGIALAQSRYWRIGSMYQGLGWEMLNWPVEANTVVEGSDSKVALAPLPVAEVNPPAPPVKASWVHKTGS 320 (363)
T ss_dssp CGGGCCSHHHHHHHHHHTSEEEEETTEEECSSCEEEESSCCHHHHHHHHSHHHHTSCEECEEEEEEECCCSSEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHCEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 68877716788888775321045787566655020366655554445777542113444445677777778747972365
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------8
Q 001511 467 ------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------~ 467 (1064)
+
T Consensus 321 ~~G~~s~~~~~P~~~~~ivvl~N~~~~~~~~~~~a~~i~~al~ 363 (363)
T d1onha_ 321 TGGFGSYVAFIPEKQIGIVMLANTSYPNPARVEAAYHILEALQ 363 (363)
T ss_dssp CSSCEEEEEEEGGGTEEEEEEESBCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 7875299999977997999997489998899999999999639
|
| >d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Hypothetical protein YteR domain: Hypothetical protein YteR species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=27330.21 Aligned_cols=1 Identities=100% Similarity=0.371 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~W~W~~G~~~~gl~~lye~Tgd~~y~~~a~~~~~~~~~~~g~~~~~~~~~d~~ 80 (363)
T d1nc5a_ 1 KSPLTYAEALANTIMNTYTVEELPPANRWHYHQGVFLCGVLRLWEATGEKRYFEYAKAYADLLIDDNGNLLFRRDELDAI 80 (363)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTTSSSTTCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHBCTTCCBCCCTTCGGGT
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 97579999999999973665348999982775649999999999883999999999999999844478745778987415
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~l~~ly~~Tgd~~y~~~a~~~~~~l~~~~~~~~g~~~~~~~~~~~~wiD~l~M~~p~l~~~~~~tgd~~y~d~a~~ 160 (363)
T d1nc5a_ 81 QAGLILFPLYEQTKDERYVKAAKRLRSLYGTLNRTSEGGFWHKDGYPYQMWLDGLYMGGPFALKYANLKQETELFDQVVL 160 (363)
T ss_dssp GGGGGHHHHHHHHCCHHHHHHHHHHHGGGGTSCBCTTSCBCSCTTSTTEEETHHHHHHHHHHHHHHHHHTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 88999999998728688999999999862137878878631367887773642067748999999998698789999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~l~d~~~gL~~h~~~~~~~~~~~~~~~~~~~~~WsRGngW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~~~~~ 240 (363)
T d1nc5a_ 161 QESLMRKHTKDAKTGLFYHAWDEAKKMPWANEETGCSPEFWARSIGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSI 240 (363)
T ss_dssp HHHHHHHHHBCTTTSCBCSEEETTCCSTTSCTTTCBCSCCBHHHHHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999997515889986525455676677788888786501100019999879999867777800999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~q~~d~G~w~~~~d~p~~~~~~~etSata~~~y~l~~g~~~g~l~~~y~~~~~ka~~~l~~~~~~~~~~g~~~v~~~~ 320 (363)
T d1nc5a_ 241 CRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKGYLDRAYETTLLKAYQGLIQHKTETSEDGAFLVKDIC 320 (363)
T ss_dssp HTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHHHHEEECTTSCEEECCEE
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 84558878662310567777898633589999999999998758444999999999999999987403899874650357
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------8
Q 001511 467 ------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------~ 467 (1064)
+
T Consensus 321 ~g~~~~~~~~y~~~~~~~~~~~G~g~fllA~~e~~~l~~~~~~ 363 (363)
T d1nc5a_ 321 VGTSAGFYDYYVSRERSTNDLHGAGAFILAMTELEPLFRSAGK 363 (363)
T ss_dssp CSCCSCCHHHHHTSCEESSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7899998200126787578757799999999999999984289
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=27330.06 Aligned_cols=1 Identities=0% Similarity=-0.792 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (363)
T d2c5aa1 1 TYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGV 80 (363)
T ss_dssp CCTTCCCCCSCTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTC
T ss_pred CHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCCEEEEECHHHHHHHHHHHCC
T ss_conf 92231356737878987999788878999999999978298999968985211342356727993515589899876148
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~ 160 (363)
T d2c5aa1 81 DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQD 160 (363)
T ss_dssp SEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSS
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76731023322222222222222222221246777767751752202446654235554456554554346677689888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~ 240 (363)
T d2c5aa1 161 AFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECV 240 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHH
T ss_conf 78999999999999999984997899982157616876432222221100000113345543438998578874002778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~~~~~~~~~~d~ska~~~LGw~p~~sleegi~~t 320 (363)
T d2c5aa1 241 EGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRIT 320 (363)
T ss_dssp HHHHHHHHSSCCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCCCCSBCEECCHHHHHHHSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99999985788882797168765389999999998689875476899998641455889999986999788999999999
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------8
Q 001511 467 ------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------~ 467 (1064)
-
T Consensus 321 i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (363)
T d2c5aa1 321 YFWIKEQIEKEKAKGSDVSLYGSSKVVGTQAPVQLGSLRAADG 363 (363)
T ss_dssp HHHHHHHHHHHHHHTCCGGGGGSCCCCCCCCCCCTTCCCCSCC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
T ss_conf 9999998876541454432145331110105312476233789
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=100.00 E-value=0 Score=27329.73 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~e~LF~P~~ig~~~lkNRiv~apm~~~~a~~~g~~~~~~~~~yy~~ra~~Glii~e~~~V~~~~~~~~~~~~l~~d~~i~ 80 (363)
T d1vyra_ 1 AEKLFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIA 80 (363)
T ss_dssp CCSTTSCEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEEEEEESSSTTCCSTTCCBSSSHHHHH
T ss_pred CCCCCCCCCCCCEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHCC
T ss_conf 95047983689989788738763468767798998989999999997086979981268885335799987437735503
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~k~l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~ 160 (363)
T d1vyra_ 81 AWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVN 160 (363)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHH
T ss_pred CCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 20033445652697046644126765454436787630101223555555344766664557877764566777999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~f~~AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~ 240 (363)
T d1vyra_ 161 DFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQ 240 (363)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBT
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCC
T ss_conf 99999999997513403451467103111446766566654464033444767888765553047887412311323311
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~~~~~~~~~~~~~~~~~~~~~~~vi~~G~~t~~~ae~~l~~G~~DlV~ 320 (363)
T d1vyra_ 241 NVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVA 320 (363)
T ss_dssp TBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEE
T ss_pred CHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCCCEEH
T ss_conf 10001330688999999877429806620347766786532888999898658539966899999999999879965115
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------8
Q 001511 467 ------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------~ 467 (1064)
-
T Consensus 321 ~gR~liadP~~~~K~~~g~~~~~~~~~~~~~~~~~~y~~y~~~ 363 (363)
T d1vyra_ 321 FGRDYIANPDLVARLQKKAELNPQRPESFYGGGAEGYTDYPSL 363 (363)
T ss_dssp ESHHHHHCTTHHHHHHHTCCCCCCCGGGSSSSSSTTTTCSCCC
T ss_pred HHHHHHHCCCHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCC
T ss_conf 5499987921999998389999998754237999985789898
|
| >d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: 3-isopropylmalate dehydrogenase, IPMDH species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=27329.40 Aligned_cols=1 Identities=0% Similarity=0.370 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 M~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~t~e~i~~~dail~Gaig~P~ 80 (363)
T d1cnza_ 1 MSKNYHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPK 80 (363)
T ss_dssp CCCCEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGG
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEECHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCCCC
T ss_conf 99986699989888559999999999999866619706999996428799974996889999999850413772257878
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~g~~~~~~~~~~~~~~~iD~vivREnteg~Y~g~~~~~~~~~~~~~ 160 (363)
T d1cnza_ 81 WENLPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK 160 (363)
T ss_dssp GTTSCGGGSTTHHHHHHHHHHHTCCEEEEEEECCTTCGGGCSBCHHHHHHCCEEEEEEECSSGGGTCSSCEEECCGGGCE
T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEECCCCCCEE
T ss_conf 65543456644006799999738825777776125655323576554679842899874135433576531316885203
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~t~~~~~ri~r~Af~~A~~r~~kVt~v~KaNv~k~~~lf~~~~~eva~~yp~I~~~~~~vD~~~~~lv~~P~~f 240 (363)
T d1cnza_ 161 AFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQSSILWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQF 240 (363)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGC
T ss_pred ECCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCC
T ss_conf 32237764899999999999999966995689813753304487899999986228874975176658999986455777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 dViv~~Nl~GDIlSDl~a~l~GglG~~~s~ni~~~~~a~fEp~HGsapdiaGk~~aNP~a~Ils~ammL~~~lg~~~~A~ 320 (363)
T d1cnza_ 241 DVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDANDAAT 320 (363)
T ss_dssp SEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTSCEEEEESSCCCGGGTTTTCSCCHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CEEEEHHHHHHHHHHHHHHHHCCCCCCHHEEEECCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 66642357777678899887504542111034036407851677765334798864909999999999984189879999
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------8
Q 001511 467 ------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------~ 467 (1064)
-
T Consensus 321 ~i~~Av~~~l~~g~~T~Dl~~~~~~~~T~e~~dai~~~l~~~~ 363 (363)
T d1cnza_ 321 AIEQAINRALEEGVRTGDLARGAAAVSTDEMGDIIARYVAEGV 363 (363)
T ss_dssp HHHHHHHHHHHTTCCCGGGTTTTTCCCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 9999999999769967564689974899999999999987019
|
| >d1kwfa_ a.102.1.2 (A:) CelA cellulase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: CelA cellulase species: Clostridium thermocellum [TaxId: 1515]
Probab=100.00 E-value=0 Score=27326.33 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~p~~~~~~~~~~~~~~~qa~~~~~~~~~w~~~k~~~~~~~~~~~~~rv~d~~~~~~~t~SEGQgYGMl~Av~~~d~~~ 80 (363)
T d1kwfa_ 1 AGVPFNTKYPYGPTSIADNQSEVTAMLKAEWEDWKSKRITSNGAGGYKRVQRDASTNYDTVSQGMGYGLLLAVCFNEQAL 80 (363)
T ss_dssp CCSSCCCCCSSSCSCSSSCHHHHHHHHHHHHHHHHHHHEECTTSTTSCEECCCGGGTTCEEHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf 99887788888766778757899999999999999998066798872488717988987312789999999998499999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 Fd~l~~wt~~~l~~~~L~aW~~~~~~~~~~~~~d~n~AtDgDl~iA~ALl~A~~~Wg~~~~~~Y~~~A~~ii~~i~~~~v 160 (363)
T d1kwfa_ 81 FDDLYRYVKSHFNGNGLMHWHIDANNNVTSHDGGDGAATDADEDIALALIFADKLWGSSGAINYGQEARTLINNLYNHCV 160 (363)
T ss_dssp HHHHHHHHHTTBCTTSSBCSEECTTSCBCTTTTTTSCBHHHHHHHHHHHHHHHHHHCSSSSSCHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999974566888536778999877677888989768999999999999774874088999999999999998510
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~l~pg~~~~~~~~~npSY~~p~~~~~fa~~~~~~~W~~v~~~s~~ll~~~~~~~~~tGL~pDw~~~~~~p~~~~~ 240 (363)
T d1kwfa_ 161 EHGSYVLKPGDRWGGSSVTNPSYFAPAWYKVYAQYTGDTRWNQVADKCYQIVEEVKKYNNGTGLVPDWCTASGTPASGQS 240 (363)
T ss_dssp CTTTCCBCSBSSSCBTTBBCGGGCCHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHTTTSTTSCCCCSSBCTTSSCCTTSC
T ss_pred CCCCCEECCCCCCCCCCEECHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78984553676568988558032359999999963687338999999999999976405888888400046888588898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~ydA~Rvp~~ia~d~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~G~~~~~~~~~~f~A~~~~~~~~~~~~~~ 320 (363)
T d1kwfa_ 241 YDYKYDATRYGWRTAVDYSWFGDQRAKANCDMLTKFFARDGAKGIVDGYTIQGSKISNNHNASFIGPVAAASMTGYDLNF 320 (363)
T ss_dssp CSBSTTGGGHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCGGGCCSCBCTTSCBCCCCCCTTTHHHHHHHHTTSSCHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf 87565599999999998750157145899999999998459888750481698446888979899999999873588589
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------8
Q 001511 467 ------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~YY~~~L~Ll~ll~~sG~~~~p~~~~ 363 (363)
T d1kwfa_ 321 AKELYRETVAVKDSEYYGYYGNSLRLLTLLYITGNFPNPLSDL 363 (363)
T ss_dssp HHHHHHHHHHCCCCGGGTTHHHHHHHHHHHHHTTCCCCTTSCC
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999987522467777887899999999999749989887679
|
| >d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes family: D-aminoacid aminotransferase-like PLP-dependent enzymes domain: Branched-chain aminoacid aminotransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=100.00 E-value=0 Score=27325.75 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~d~m~~~~~~~~~W~ng~ivp~~~~~isp~~~~l~YG~gvFEgiR~y~ 80 (363)
T d2a1ha1 1 SSFKAADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFK 80 (363)
T ss_dssp CCCCGGGCEECCCSSCCCCCCTTSCCCTTCSCCSEEEEEEEETTEECCCEEEESCCEEECTTBHHHHSCCEEECCEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEECCEEEECCCCEECCCHHHCCCCCEEEEEEEEEE
T ss_conf 97542115999767998898972237777755651799992288300887868412610720111304424353689998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~g~i~lFrld~Hl~RL~~Sa~~l~~~~~~~~~~~~~i~~~v~~n~~~v~~~~~~~~yiR~~v~~~~~~~~~~~~~~~~ 160 (363)
T d2a1ha1 81 GKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRAL 160 (363)
T ss_dssp CTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCSTTCEEEEEEEEEECCBCCSCSCCSEEE
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 79997899735788777888889757999876899999999998777526654465379997622677644566776662
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~k~~~ny~~~~la~~eA~~~G~de~l~L~~~dg~v~E~~~sN 240 (363)
T d2a1ha1 161 LFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMN 240 (363)
T ss_dssp EEEEEEEECCSSSSSSCCCEEEEECTTCCSCCTTSSTTSCBGGGTTTHHHHHHHHHHTTCSEEEEEETTTTEEEEETTEE
T ss_pred EEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCEEEECCCEE
T ss_conf 14897603456750013644689751011467545534214556422226888761489501100013451489616607
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 iF~v~~~kdG~~~l~tppl~~~ILpGITR~~Viela~~~g~i~V~Er~i~~~eL~~A~~~~~~dEvF~tgTa~~I~PV~~ 320 (363)
T d2a1ha1 241 IFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHR 320 (363)
T ss_dssp EEEEEECTTSCEEEEECCCSSSSCCCHHHHHHHHHHHHHTSSEEEECCCBHHHHHHHHHTTCEEEEEEEETTTEEEEEEE
T ss_pred EEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCCCCEEEECCCCCEEEEEEE
T ss_conf 99998358885799723654334674489999999997399820664779999996765599618998478858999999
Q ss_pred ------------------------------------------E
Q ss_conf ------------------------------------------8
Q 001511 467 ------------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------------~ 467 (1064)
.
T Consensus 321 I~~~~~~~~i~~g~~g~~it~~L~~~l~~iq~G~~~~~W~~~v 363 (363)
T d2a1ha1 321 ILYKDRNLHIPTMENGPELILRFQKELKEIQYGIRAHEWMFPV 363 (363)
T ss_dssp EEETTEEEECTTGGGTTHHHHHHHHHHHHHHTTSSCCTTEEEC
T ss_pred EEECCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEC
T ss_conf 9867964893899808899999999999976788899973579
|
| >d1umga_ d.280.1.1 (A:) ST0318 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Sulfolobus fructose-1,6-bisphosphatase-like superfamily: Sulfolobus fructose-1,6-bisphosphatase-like family: Sulfolobus fructose-1,6-bisphosphatase-like domain: ST0318 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=100.00 E-value=0 Score=27264.81 Aligned_cols=1 Identities=100% Similarity=0.371 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 k~TvSvIKADVGg~~GHt~~hp~ll~~a~~~l~~a~~~glliD~~v~~~GDDi~limTH~~G~d~~eiH~lAW~aF~~~t 80 (362)
T d1umga_ 1 KTTISVIKADIGSLAGHHIVHPDTMAAANKVLASAKEQGIILDYYITHVGDDLQLIMTHTRGELDTKVHETAWNAFKEAA 80 (362)
T ss_dssp CEEEEEEEECCCBBTTTTBCCHHHHHHHHHHHHHHHHTTSCSEEEEEEETTEEEEEEEESSCTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 94699997236787777768989999999999861138868877667643742578754689894899999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~vAK~l~LYGAGQDLL~DaFSGNvkGmGPgvAEmEf~ERpsEp~~vF~aDKTePGAfNlPlY~~FaDPfnt~GLvidp~m 160 (362)
T d1umga_ 81 KVAKDLGLYAAGQDLLSDSFSGNVRGLGPGVAEMEIEERASEPIAIFMADKTEPGAYNLPLYKMFADPFNTPGLVIDPTM 160 (362)
T ss_dssp HHHHHTTCBTTTTTTCTTSSSSSCCCCCCEEEEEEECCCSSCEEEEEEEESBCGGGGHHHHHHHHHCTTTCTHHHHCGGG
T ss_pred HHHHHHCCCCCCCHHHCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEECCCC
T ss_conf 99887256556621211346765257787437887225789857999853888760120689984284578750317101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 h~Gf~FeV~Dv~~~k~i~l~~Pee~Ydllalig~~~RyvI~~V~~k~~~eiaav~St~RL~~iAG~YvGKDDPV~iVR~Q 240 (362)
T d1umga_ 161 HGGFKFEVLDVYQGEAVMLSAPQEIYDLLALIGTPARYVIRRVYRNEDNLLAAVVSIERLNLIAGKYVGKDDPVMIVRLQ 240 (362)
T ss_dssp TTCEEEEEEETTTTEEEEEETTTTHHHHHHHHTSTTTEEEEEEEETTTCCEEEEECCCCCBCC---CBCCCSCEEEEECS
T ss_pred CCCEEEEEEEECCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEHHHHHHHHCEECCCCCCEEEEEEC
T ss_conf 36705899970257178851806877899983898735899998668997789976678776406120688866999846
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~gfPA~gEvlepFa~phlVaGwmRGSH~gPlMPV~~~da~~trFdgpPrV~alGFql~~GkL~GP~DlFddpafD~~R~~ 320 (362)
T d1umga_ 241 HGLPALGEALEAFAFPHLVPGWMRGSHYGPLMPVSQRDAKATRFDGPPRLLGLGFNVKNGRLVGPTDLFDDPAFDETRRL 320 (362)
T ss_dssp SSSCCHHHHHHTTSSCCEEEETGGGCEEEECEEECSTTCSCCGGGCSCEEEEEEEEEETTEEEEEEESSCSGGGHHHHHH
T ss_pred CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEECCCCCCCCCCCHHHHHHH
T ss_conf 88996465542244652114434566678743201456887567899768888888627887376324577430689999
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------8
Q 001511 467 -----------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------~ 467 (1064)
+
T Consensus 321 a~~~A~~mR~~Gpf~PhrLp~~emEYttlp~vl~kL~~rf~~ 362 (362)
T d1umga_ 321 ANIVADYMRRHGPFMPHRLEPTEMEYTTLPLILEKLKDRFKK 362 (362)
T ss_dssp HHHHHHHHHTTTTCTTTBCCGGGCSSCCHHHHHHHTTTTCCC
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 999999998549987655897880211388999999887519
|
| >d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Release factor superfamily: Release factor family: Release factor domain: Polypeptide chain release factor 2 (RF2) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27261.09 Aligned_cols=1 Identities=0% Similarity=0.237 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~l~~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL 80 (362)
T d1gqea_ 1 INPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGL 80 (362)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 91689999999999999997769798999999999986397144499999999999999999999999999999988877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~Ela~ee~deel~~e~~~~l~~l~~~l~~le~~ll~~~~~D~~nailEIrAGaGG~EA~dfA~~L~RMY~r~ae~~gwk~ 160 (362)
T d1gqea_ 81 LELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKT 160 (362)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 87764110588888899999998622467787521367545454379998257606688999999999999999759858
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 eiid~~~~e~gG~K~v~~~I~G~~ayg~Lk~EsGvHRvqRvp~~es~gr~hTS~a~V~v~P~~~~~~~~~i~~~dl~i~~ 240 (362)
T d1gqea_ 161 EIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDV 240 (362)
T ss_dssp EEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEE
T ss_pred EEECCCCCCCCCEEEEEEEEECCCHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCEECCHHHEEEEE
T ss_conf 99414567766546999999776688999872375048884046777347998778899624787631111767827997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~rs~g~GGQ~vN~t~savri~H~ptgi~v~~q~ersq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~i 320 (362)
T d1gqea_ 241 YRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQI 320 (362)
T ss_dssp ECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCCCSCSEE
T ss_pred EECCCCCCCCHHHHHCEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 52699886512033141688744733677764221014789999999999999999999999999887423127576984
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------8
Q 001511 467 -----------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------~ 467 (1064)
-
T Consensus 321 RtY~~~~~rv~DhR~~~~~~~~~~vl~G~ld~~i~a~l~~~~ 362 (362)
T d1gqea_ 321 RSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKAGL 362 (362)
T ss_dssp EEEEGGGTEEEETTTCCEESCHHHHHTTCCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCCCCEECCHHHHHCCCHHHHHHHHHHCCC
T ss_conf 676589981500053972578468758877999999987779
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=27258.34 Aligned_cols=1 Identities=0% Similarity=-1.324 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~r~l~~~g~~~~~~~~~ls~e~l~~~yr~M~~~R~~ee~~~~l~~~g~~~~~~~~~GqEA~~vg~~~al~ 80 (362)
T d1umda_ 1 HRFETFTEEPIRLIGEEGEWLGDFPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIR 80 (362)
T ss_dssp CCCCSSCSSCBCCBCTTSCBCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSC
T ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCC
T ss_conf 99877886764777899989987899979999999999999999999999999977996022278978999999999758
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~D~~~~~yR~h~~~la~G~~~~~~~ae~~gk~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~a~G~A~a~k~~~~ 160 (362)
T d1umda_ 81 PGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRT 160 (362)
T ss_dssp TTTSEEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 78786873134189999987439999999845568986543542124212367444444223230077777876530344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~a~~~gi~~~~vDGnDv~~v~~ 240 (362)
T d1umda_ 161 GQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYY 240 (362)
T ss_dssp CCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHH
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHEEEEEEECCCHHHHHHH
T ss_conf 42356522688656773499997764336870366520366644321011145344422232100026744505889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 a~~~Ai~~~R~g~gP~lIE~~tyR~~gHs~~Dd~~~YR~~~Ei~~w~~~DPi~~~~~~L~~~g~~se~e~~~i~~ei~~~ 320 (362)
T d1umda_ 241 VVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAE 320 (362)
T ss_dssp HHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHHHTTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999985689789971334335787655202220014667773299899999999987999999999999999999
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------8
Q 001511 467 -----------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------~ 467 (1064)
-
T Consensus 321 V~~a~~~A~~~p~P~~~~l~~~VY~~~~~~l~~q~~~~~~~~ 362 (362)
T d1umda_ 321 LERGLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEEL 362 (362)
T ss_dssp HHHHHHHHHHTCBCCGGGGGTTSSSSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHC
T ss_conf 999999998679989899971315799963999999999559
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=100.00 E-value=0 Score=27256.49 Aligned_cols=1 Identities=0% Similarity=-1.191 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~f~le~G~~l~~~~l~Y~t~G~ln~~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~ 80 (362)
T d2pl5a1 1 GSIGIIETKYAEFKELILNNGSVLSPVVIAYETYGTLSSSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKS 80 (362)
T ss_dssp CCCCBCCCEEEEESCEECTTSCEESSEEEEEEEEECCCTTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSS
T ss_pred CCCCCEEEEEEECCCEECCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHCCCCCCCCCCCCCHHHHHCCCCCC
T ss_conf 97673666688518756689887689569999630338889988998788776321155677667883358884599976
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 lDt~~yfVI~~n~lG~~~~ss~~~s~~p~~~~~yg~~fP~~t~~D~v~~~~~ll~~LGI~~l~~viG~SmGGmqAl~wA~ 160 (362)
T d2pl5a1 81 FDTNQYFIICSNVIGGCKGSSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESLGIEKLFCVAGGSMGGMQALEWSI 160 (362)
T ss_dssp EETTTCEEEEECCTTCSSSSSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHTTCSSEEEEEEETHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHH
T ss_conf 47553579962335676666675420012345557677520168899999999997186726777403577889999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~yPd~v~~~v~ia~sa~~s~~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~P~~GL~~AR~~~~~~y~s~~~~~~~f~~~~~~ 240 (362)
T d2pl5a1 161 AYPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPR 240 (362)
T ss_dssp HSTTSEEEEEEESCCSBCCHHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCS
T ss_pred HCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC
T ss_conf 48367664001346533677799999999999844974236875667836799999999999870926666563333444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~ve~yl~~~g~k~~~rfDan~yl~l~~a~~~~Di~~~~~l~~aL~~I~AkvLvi~~~sD~lFpp~~~~~~a~ 320 (362)
T d2pl5a1 241 GNILSTDFAVGSYLIYQGESFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVK 320 (362)
T ss_dssp SCTTTTTTTSCGGGGSTTCCSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf 55442067799999998988874078778999986311146333225999996189988999857552759999999999
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------8
Q 001511 467 -----------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------~ 467 (1064)
.
T Consensus 321 ~l~~a~~~v~~~eI~S~~GHdaFL~e~~~~~~~I~~FL~~p~ 362 (362)
T d2pl5a1 321 SLEAADKRVFYVELQSGEGHDSFLLKNPKQIEILKGFLENPN 362 (362)
T ss_dssp HHHHTTCCEEEEEECCCBSSGGGGSCCHHHHHHHHHHHHCCC
T ss_pred HHHHCCCCEEEEEECCCCCCCHHCCCHHHHHHHHHHHHCCCC
T ss_conf 997579976999948999742105488999999999973999
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=100.00 E-value=0 Score=27255.27 Aligned_cols=1 Identities=100% Similarity=0.669 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~e~~ltFdDVlLvP~~Sti~s~r~dVdl~~~l~~~~~~~~~~i~l~iPIIsAnMDTVt~~~mA~~la~~Gglgvih 80 (362)
T d1pvna1 1 AKYYNEPCHTFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSVSGEKMAIALAREGGISFIF 80 (362)
T ss_dssp CEECSSCBCCGGGEEECCCCBCTTCCGGGCBCCEECSCEETTSCCSCEESSSEEECSCTTTCSHHHHHHHHHTTCEEEEC
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEEE
T ss_conf 95456788785566983798767777101360268774024556663569847846888768999999999888977995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 R~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ag~d~i~IDvAhG~~~~v~~~i~~ir~~~~~~~~IiAGNV 160 (362)
T d1pvna1 81 GSQSIESQAAMVHAVKNFRYLVGAGINTRDFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNI 160 (362)
T ss_dssp CSSCHHHHHHHHHHHHTCCCCCEEEECSSSHHHHHHHHHHHTCSEEEECCSCCCBHHHHHHHHHHHHHHGGGSCEEEEEE
T ss_pred ECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECHHCCCHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 05999999998642332023221211013567777777641854775300001015788999999886533103421244
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 aT~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~~tGvG~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla 240 (362)
T d1pvna1 161 VDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALA 240 (362)
T ss_dssp CSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHTCBCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEE
T ss_conf 67889999997297579844303434343655503771677999999999875332036875353323474662357888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~GAd~VM~G~~lAg~~Espg~~~~~~g~~~k~~~Gm~S~~a~~~~~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~l~g 320 (362)
T d1pvna1 241 MGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNWQRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEASLN 320 (362)
T ss_dssp TTCSEEEESHHHHTBTTSSSCEEEETTEEEEEEECTTSTTTCCGGGGCSSSCSSCSSCCBCEEEEECCBCHHHHHHHHHH
T ss_pred EECCCEEEHHHHHCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 71340021115405565577310103513666622531213322212446521036899737996268777889999999
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------8
Q 001511 467 -----------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------~ 467 (1064)
+
T Consensus 321 glrs~~~y~G~~~l~~~~~~~~f~~~t~~~~~E~~~H~~~~~ 362 (362)
T d1pvna1 321 KVKSTMCNCGALTIPQLQSKAKITLVSSVSIVEGGAHDVIVK 362 (362)
T ss_dssp HHHHHHHHTTCSBHHHHHHHCEEEEBCHHHHHHHSCCSSEEC
T ss_pred HHHHHHHHCCCCCHHHHHHCCEEEEECCCCCCCCCCCCEEEC
T ss_conf 999987532767599997488999988210211568826739
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=100.00 E-value=0 Score=27254.37 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~q~~~~~l~e~a~~~~~~d~~lll~~y~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~nA~~fl~~~~Q~k~~k~~~~~v~ 80 (362)
T d1svma_ 1 KQVSWKLVTEYAMETKCDDVLLLLGMYLEFQYSFEMCLKCIKKEQPSHYKYHEKHYANAAIFADSKNQKTICQQAVDTVL 80 (362)
T ss_dssp CCCCHHHHHHHHHHTTCCCHHHHHHHHHGGGSCSTTCHHHHTTCCHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97428888988987589739999999998712518889999877789999999860669999873106899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~kr~~~~~ms~~e~i~~~~~~~~~~~p~~~~~~~~~d~~~~~~il~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 160 (362)
T d1svma_ 81 AKKRVDSLQLTREQMLTNRFNDLLDRMDIMFGSTGSADIEEWMAGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFK 160 (362)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTSTTCCCCHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 99997312699899999999999853863334544467888999999998644325899999999998289976769998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~~l~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~DeiD~l~~~~dg~~ 240 (362)
T d1svma_ 161 GPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSV 240 (362)
T ss_dssp CSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHCSS
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCCC
T ss_conf 99998889999999998599789997742011888875777799899999876541068997288750731134568860
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~p~i~ttN~~~~~~~r~~Rf~~~i~~~~~~~~~~~~~~l~~i~~~~~l~~~~~~L~~li~~~s~ 320 (362)
T d1svma_ 241 KVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPV 320 (362)
T ss_dssp CEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTHHHHTTCTTCHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHCHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCH
T ss_conf 13444210024553167724650654300122466736886268974789999999984035788888999987368987
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------8
Q 001511 467 -----------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------~ 467 (1064)
+
T Consensus 321 ~D~~~~i~~~~~~~~~~l~~ei~~~~~~~~k~~I~~Gk~ile 362 (362)
T d1svma_ 321 AEFAQSIQSRIVEWKERLDKEFSLSVYQKMKFNVAMGIGVLD 362 (362)
T ss_dssp GGSCGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
T ss_conf 999999999999999987524149999999999976997779
|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Mouse (Mus musculus), kif2c [TaxId: 10090]
Probab=100.00 E-value=0 Score=27254.21 Aligned_cols=1 Identities=0% Similarity=-0.726 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
T d1v8ka_ 1 PNWEFARMIKEFRVTMECSPLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQ 80 (362)
T ss_dssp CCHHHHHHHHHHHHHHTCCTTTTTCTTSCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCE
T ss_conf 96689999999986413489877888888888999980899968863799469998899189981886444655676860
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~f~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifaYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lf~~~~~ 160 (362)
T d1v8ka_ 81 AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQ 160 (362)
T ss_dssp EEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTS
T ss_pred EEECCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHC
T ss_conf 67678661999998999999999999998741681388632578888603330577876555687133115567777630
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~~~~~~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~~T~~N~~S 240 (362)
T d1v8ka_ 161 PRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNS 240 (362)
T ss_dssp HHHHTTCCEEEEEEEEEETTEEEETTTTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CC
T ss_pred CCCCCCCHHHEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 12346323311021463277487634577544322124577465898899946889989987414545430245674567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 SRSH~i~~i~i~~~~~~~~~l~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~~L~~vi~aL~~~~~hiPyR~SkLT~l 320 (362)
T d1v8ka_ 241 SRSHACFQILLRTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQV 320 (362)
T ss_dssp CSSEEEEEEEEESSSSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHH
T ss_pred CCEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 51005799999855600136765202566554444453156553332211107789999999856999688746888886
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------8
Q 001511 467 -----------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------~ 467 (1064)
+
T Consensus 321 LkdsllGgns~t~~i~~vsp~~~~~~eTl~TL~fa~rak~It 362 (362)
T d1v8ka_ 321 LRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 362 (362)
T ss_dssp TTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 133047998619999996987010899999999999974379
|
| >d2drwa1 e.3.1.1 (A:2-363) D-Amino acid amidase DaaA {Ochrobactrum anthropi [TaxId: 529]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: D-Amino acid amidase DaaA species: Ochrobactrum anthropi [TaxId: 529]
Probab=100.00 E-value=0 Score=27253.60 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~i~~~~~~~~~~g~~g~~v~v~~~g~~v~~~~~G~ad~~~~~p~t~dt~f~i~SvsK~~ta~~i~~lve~G~l~l 80 (362)
T d2drwa1 1 SDLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDL 80 (362)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEEEEECTTSCEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHTTSCCT
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCC
T ss_conf 95789999999999775997289999999999999857882056698799998697115689999999999997699877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 dd~v~~ylp~~~~~~~iTi~~LL~htSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~Ysn~~~~llg~ii 160 (362)
T d2drwa1 81 DEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMII 160 (362)
T ss_dssp TSBGGGTCTTSTTGGGCBGGGGTTTCSCCCCCTTTSBSSCCCCCCHHHHHHHHHHHSCCCCTTSSCCCCSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEECCCCCCEECCCCHH
T ss_conf 76664420354434332335555326899764332223332321026777766406766532201102454311043022
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 e~~tg~~~~~~~~e~i~~PLgm~~T~~~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (362)
T d2drwa1 161 AHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANA 240 (362)
T ss_dssp HHHHTSCHHHHHHHHTHHHHTCCSCEETTTCCCCGGGBCCCEEECBTTCCSCSSBCTTCCCCBTTEEECTTTSCHHHHGG
T ss_pred HHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 32057526666678888502876523357311454533310211556555643233345676566334621134445566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 aGgl~sta~Dla~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yG~G~~~~~~~~~~~~gH~G~~~G~~s~~~~~ 320 (362)
T d2drwa1 241 AGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRD 320 (362)
T ss_dssp GTCEEECHHHHHHHHHHHHTTSSSCHHHHHHHHTSCEECCCTTSCEEEECSSCEEEEETTEEEEEEEEEETTEEEEEEEC
T ss_pred CCCEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCEEEEEEE
T ss_conf 57527189999999999847997899999999974256535799888704369998459941898246578823999999
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------8
Q 001511 467 -----------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------~ 467 (1064)
+
T Consensus 321 p~~~~~iv~l~N~~~~~~~~~~~~~~~~~~~~il~ai~~~~~ 362 (362)
T d2drwa1 321 EETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSRS 362 (362)
T ss_dssp TTTCCEEEEEESEECSSTTSHHHHTTHHHHHHHHHHHHHHTC
T ss_pred ECCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 879989999994999556899999999999999999975649
|
| >d3thia_ c.94.1.1 (A:) Thiaminase I {Paenibacillus thiaminolyticus [TaxId: 49283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Thiaminase I species: Paenibacillus thiaminolyticus [TaxId: 49283]
Probab=100.00 E-value=0 Score=27253.26 Aligned_cols=1 Identities=0% Similarity=0.570 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~tl~~~~~~~~p~~~~~~~~~~~~F~~~~P~V~v~~~~~~~~~~~~~~~pDv~~~~~~~~~~~~~~g~l~~L~~~~~~~~ 80 (362)
T d3thia_ 1 ITLKVAIYPYVPDPARFQAAVLDQWQRQEPGVKLEFTDWDSYSADPPDDLDVFVLDSIFLSHFVDAGYLLPFGSQDIDQA 80 (362)
T ss_dssp CEEEEECCSCSSCHHHHHHHHHHHHHHHCTTSEEEECCCCTTTCCCCTTCCEEEEEGGGHHHHHHTTCEECBCGGGCTTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHCCCCCCEEEEECHHHHHHHHHCCCCCCCCHHHHHCC
T ss_conf 98999966788867999999999999988193899996652544489989699989088999998898233871011110
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~dG~~y~vP~~~~~~~~~ynkd~~~~aG~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (362)
T d3thia_ 81 EDVLPFALQGAKRNGEVYGLPQILCTNLLFYRKGDLKIGQVDNIYELYKKIGTSHSEQIPPPQNKGLLINMAGGTTKASM 160 (362)
T ss_dssp GGBCHHHHHHTEETTEECCEEEEEECEEEEEETTCHHHHTCCBHHHHHHHHCCCCCCCSSCCEEEEEEECCCSHHHHHHH
T ss_pred CHHHHHHHHCEEECCEEEEEEEECCCEEEEECHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHH
T ss_conf 01113344311569979997651210799961468997389999973789999999751257887246305877526889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~ 240 (362)
T d3thia_ 161 YLEALIDVTGQYTEYDLLPPLDPLNDKVIRGLRLLINMAGEKPSQYVPEDGDAYVRASWFAQGSGRAFIGYSESMMRMGD 240 (362)
T ss_dssp HHHHHHHHHTCCCCCSSCCCSSSCCHHHHHHHHHHHHHHCHHHHHCCCTTCCTTHHHHHHHHTBEEEEEEETTHHHHHGG
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECHHHHHHHHH
T ss_conf 99999861885113677633443679999999999997304775334466770122111005818999916587655543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~P~~~~~~~~~~~~~~~~i~~~s~~~e~A~~fi~fl~s~e~~~~~~~~~g~~~~~~~~~pa~~~~~e~~~~ 320 (362)
T d3thia_ 241 YAEQVRFKPISSSAGQDIPLFYSDVVSVNSKTAHPELAKKLANVMASADTVEQALRPQADGQYPQYLLPARHQVYEALMQ 320 (362)
T ss_dssp GGGTEEEECCBSCSSCCCCEEEEEEEEEETTCSCHHHHHHHHHHHHSHHHHHHHHSCCSTTCCCCCCEESBHHHHHHHTT
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 06766546415787789875450231101676479999999999719999999998468876742445057999863310
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------8
Q 001511 467 -----------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------~ 467 (1064)
-
T Consensus 321 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~e~lg 362 (362)
T d3thia_ 321 DYPIYSELAQIVNKPSNRVFRLGPEVRTWLKDAKQVLPEALG 362 (362)
T ss_dssp TCTHHHHHHHHHTCTTCEECCCCTTHHHHHHHHTTTHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 398699999999987688761799999999999999998609
|
| >d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: 3-isopropylmalate dehydrogenase, IPMDH species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=27253.03 Aligned_cols=1 Identities=0% Similarity=-1.853 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~kI~vipGDGIGpEV~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~et~e~~~~~dail~Gai 80 (362)
T d1vlca_ 1 KIHHHHHHMKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSV 80 (362)
T ss_dssp CCCCCCSEEEEEEEEESTHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEEC
T ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97768985799998988667999999999999998762997899998457899997789787899999999789871577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 g~p~~~~~~~~~~~~~~~~~~lR~~ldlyanvRP~r~~~~~~~~~~~~~~~~~~~iD~vivREnteg~Y~g~~~~~~~~~ 160 (362)
T d1vlca_ 81 GGPKWDDLPPEKRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLDEEK 160 (362)
T ss_dssp CCGGGTTSCSTTSHHHHTHHHHHHHTTCCEEEEEEECCGGGGGGSSSCHHHHTTCCEEEEEEECSSGGGTEEEEEECSSC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCE
T ss_conf 79986543213477665578899974433220026753034566666555667772379850124675557777788856
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~t~~~~~Riar~Af~~A~~~~k~Vt~v~K~Nv~~~~~lf~~~~~eva~~yp~I~~~~~~vD~~~~~lv~~P~~f 240 (362)
T d1vlca_ 161 GFDTMIYDRKTVERIARTAFEIAKNRRKKVTSVDKANVLYSSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQF 240 (362)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGC
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHCCCCC
T ss_conf 99989943478789999999998618980799943775201589999999999667986999730989999998665777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 dViv~~Nl~GDIlSDl~a~l~GglGl~ps~nig~~~~fE~~HGSApdiaGk~iaNP~a~ils~ammL~~~lg~~~~A~~i 320 (362)
T d1vlca_ 241 DVILTTNMFGDILSDESAALPGSLGLLPSASFGDKNLYEPAGGSAPDIAGKNIANPIAQILSLAMMLEHSFGMVEEARKI 320 (362)
T ss_dssp SEEEECHHHHHHHHHHHTTSSSCGGGCEEEEESSSEEEEESSCCCTTTTTTTCSCCHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 58985306666777899998513332101210422323125686201058986480999999999987346986999999
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------8
Q 001511 467 -----------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------~ 467 (1064)
-
T Consensus 321 ~~Av~~~l~~G~~T~Dlg~~~~~~~~T~e~~dav~~~l~~l~ 362 (362)
T d1vlca_ 321 ERAVELVIEEGYRTRDIAEDPEKAVSTSQMGDLICKKLEEIW 362 (362)
T ss_dssp HHHHHHHHHTTCCCGGGCSSGGGCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 999999998599570004699997769999999999999759
|
| >d1nqka_ c.1.16.4 (A:) Alkanesulfonate monooxygenase SsuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Bacterial luciferase-like family: Ssud-like monoxygenases domain: Alkanesulfonate monooxygenase SsuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27252.84 Aligned_cols=1 Identities=0% Similarity=0.237 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~AE~lGfd~~w~~eh~~~~dp~~~la~la~~T~rI~lgt~V~~ 80 (362)
T d1nqka_ 1 MSLNMFWFLPTHGDGHYLGTEEGSRPVDHGYLQQIAQAADRLGYTGVLIPTGRSCEDAWLVAASMIPVTQRLKFLVALRP 80 (362)
T ss_dssp CCBEEEEECCTTCEESSTTSSTTEECCCHHHHHHHHHHHHHHTCSEEEECCSTTSCCHHHHHHTTSTTCSSCEEEEEECT
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCEEEEEEEECC
T ss_conf 92479997456899887888888788999999999999998499999968888888899999999997490699999739
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~P~~~A~~~AtLd~lS~GR~~lGlG~G~~~~e~~~~g~~~~~~~~~~~~~E~~~ilr~l~~~e~v~~~G~~~~~~~~ 160 (362)
T d1nqka_ 81 SVTSPTVAARQAATLDRLSNGRALFNLVTGSDPQELAGDGVFLDHSERYEASAEFTQVWRRLLQRETVDFNGKHIHVRGA 160 (362)
T ss_dssp TTSCHHHHHHHHHHHHHHTTSCEEEEECCCCCHHHHHHHTCCCCTTHHHHHHHHHHHHHHHHTTTCCEEEECSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
T ss_conf 98986999999999999749985268863666888852122220245566678989999875025664554124652587
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~p~~~p~ppi~~a~~~p~~~~~Aa~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Gr~~~~~~~~~~~~~~~~~~~~ 240 (362)
T d1nqka_ 161 KLLFPAIQQPYPPLYFGGSSDVAQELAAEQVDLYLTWGEPPELVKEKIEQVRAKAAAHGRKIRFGIRLHVIVRETNDEAW 240 (362)
T ss_dssp CCSSCCSSSSSSCEEEECSSHHHHHHHHHHCSEEEEECCCHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEESSHHHHH
T ss_pred CCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCHHHHH
T ss_conf 54234478997016874265789998874265512458999999999999999999709975242343699944689999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGtpe~V~e~L~~~~ 320 (362)
T d1nqka_ 241 QAAERLISHLDDETIAKAQAAFARTDSVGQQRMAALHNGKRDNLEISPNLWAGVGLVRGGAGTALVGDGPTVAARINEYA 320 (362)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHSCC-----------------CTTEEETTEEGGGGSSSSSCSCEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHH
T ss_conf 98765665430889999986542012100466776530340144433467767777506888708858999999999999
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------8
Q 001511 467 -----------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------~ 467 (1064)
-
T Consensus 321 ~~G~d~~~l~~~~~~~~l~~f~eeV~P~l~~~~~~~~~~~~~ 362 (362)
T d1nqka_ 321 ALGIDSFVLSGYPHLEEAYRVGELLFPLLDVAIPEIPQPQPL 362 (362)
T ss_dssp TTTCCEEEEECSSHHHHHHHHHHHTGGGSCBCCCCCCCCCCC
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 729998999489998999999998999870135067899998
|
| >d2gjxa1 c.1.8.6 (A:167-528) beta-hexosaminidase A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: beta-hexosaminidase A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27252.73 Aligned_cols=1 Identities=0% Similarity=1.167 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
|
T Consensus 1 f~~RG~mlD~aR~~~~~~~lk~~id~ma~~K~N~lhlHltD~~~~r~e~~~~p~l~~~ga~~~~~~~yT~~d~~elv~yA 80 (362)
T d2gjxa1 1 FPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYA 80 (362)
T ss_dssp CSEEEEEEETTTSCCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCBCCSSCTHHHHHHSSCTTTSCBCHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 98558677638888089999999999998299389999874787600147873144337868878863899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~v~~E~~~lF~~~~iHiGgDE~~~ 160 (362)
T d2gjxa1 81 RLRGIRVLAEFDTPGHTLSWGPGIPGLLTPCYSGSEPSGTFGPVNPSLNNTYEFMSTFFLEVSSVFPDFYLHLGGDEVDF 160 (362)
T ss_dssp HHTTCEEEEECCCSSSCTTTTTTSTTCEEEEESSSSEEEEEEEECTTCHHHHHHHHHHHHHHHHHCCSSEEECCCCSCCS
T ss_pred HHCCCEEEECCCCCCHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 97598798536665046899874833137665788877755665777377899899999999885146537740540124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~w~~~p~~~~~~~~~g~~~~~~~l~~~f~~~~~~~l~~~gk~~i~W~d~~~~~~~l~~d~ii~~W~~~~~~~~~~~~~~ 240 (362)
T d2gjxa1 161 TCWKSNPEIQDFMRKKGFGEDFKQLESFYIQTLLDIVSSYGKGYVVWQEVFDNKVKIQPDTIIQVWREDIPVNYMKELEL 240 (362)
T ss_dssp HHHHHCHHHHHHHHHHTCTTCSHHHHHHHHHHHHHHHHTTTCEEEEEHHHHHTTCCCCTTCEEEECCSSSSSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 43336878899998617788999999999999999999739706744410256777899872564314543668989999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~G~~~i~s~~~yl~~~~~g~~w~~~y~~~p~~~~~~~~~~~~ilG~e~~lW~E~i~~~~l~~~~~PRl~A~AE~~Ws 320 (362)
T d2gjxa1 241 VTKAGFRALLSAPWYLNRISYGPDWKDFYVVEPLAFEGTPEQKALVIGGEACMWGEYVDNTNLVPRLWPRAGAVAERLWS 320 (362)
T ss_dssp HHHTTCEEEECTTCCTTSCBSSCTHHHHHHCCTTCSSCCHHHHTTEEEEEEEECTTSCSTTTHHHHHTTHHHHHHHHHHS
T ss_pred HHHCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 97579859981674256567777656545531036766865650550347770107778510688899799999999859
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------8
Q 001511 467 -----------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~d~~~f~~Rl~~~~~rL~~~Gi~~~p~~~~~c~~~~~~ 362 (362)
T d2gjxa1 321 NKLTSDLTFAYERLSHFRCELLRRGVQAQPLNVGFCEQEFEQ 362 (362)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCSSCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCC
T ss_conf 987889999999999999999977998769998645420329
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=27252.27 Aligned_cols=1 Identities=0% Similarity=0.902 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~p~~~g~~~~~~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~ 80 (362)
T d1q8ya_ 1 YHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGAN 80 (362)
T ss_dssp CCCCCTTCEETTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHT
T ss_pred CCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCC
T ss_conf 97888888844785799899750778189999999999799999983431336899999999998401455555422767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~ 160 (362)
T d1q8ya_ 81 HILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLME 160 (362)
T ss_dssp TBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEE
T ss_pred CEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEE
T ss_conf 64789987631256520234320003542000001223467868999999999999988876405864656770570563
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~ 240 (362)
T d1q8ya_ 161 IVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKD 240 (362)
T ss_dssp EEETTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CH
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 05765644305675314421234454223665210571321466777643201237899999878899898755432102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rp 320 (362)
T d1q8ya_ 241 DDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRA 320 (362)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCB
T ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCC
T ss_conf 68999999983799878862453220001320122024323577644421000156743589999999998779945790
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------8
Q 001511 467 -----------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------~ 467 (1064)
.
T Consensus 321 ta~e~L~Hp~f~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 362 (362)
T d1q8ya_ 321 DAGGLVNHPWLKDTLGMEEIRVPDRELYGSGSDIPGWFEEVR 362 (362)
T ss_dssp CHHHHHTCGGGTTCTTCTTCCCTTSCTTCBSTTSTTSSSCCC
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
T ss_conf 899996693407898744477998666788899984354409
|
| >d1qjwa_ c.6.1.1 (A:) Cellobiohydrolase II (Cel6) {Trichoderma reesei, Cel6a [TaxId: 51453]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycosyl hydrolases family 6, cellulases family: Glycosyl hydrolases family 6, cellulases domain: Cellobiohydrolase II (Cel6) species: Trichoderma reesei, Cel6a [TaxId: 51453]
Probab=100.00 E-value=0 Score=27249.94 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~gNPf~g~~~yvnP~y~a~v~~~a~~~~~~~~~~~~~~ia~~Pta~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (362)
T d1qjwa_ 1 ATYSGNPFVGVTPWANAYYASEVSSLAIPSLTGAMATAAAAVAKVPSFMWLDTLDKTPLMEQTLADIRTANKNGGNYAGQ 80 (362)
T ss_dssp CCCSSCTTTTSEECCCHHHHHHHHHHTGGGCCHHHHHHHHHHTTSCCCEEECSGGGHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 97678998897331473058899998751368788999999846780698237788740689999999998726887228
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 lV~Y~iP~RDC~a~ss~G~~~~~~~g~~~Yk~Yid~Ia~~~~~~~~~~~vvIlEPDsL~nlvt~~~~~~c~~~~~~~~~~ 160 (362)
T d1qjwa_ 81 FVVFDLPDRDCAALASNGEYSIADGGVAKYKNYIDTIRQIVVEYSDIRTLLVIEPDSLANLVTNLGTPKCANAQSAYLEC 160 (362)
T ss_dssp EEECCCTTCSTTCSTTCCSCCGGGTHHHHHHHHHHHHHHHHHHTTTSCEEEEECSSSHHHHHHCTTSHHHHTTHHHHHHH
T ss_pred EEEECCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99936999971444249986656554688999999999999856897439997776066654057844457789999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 l~yAv~~L~~pnv~vYlDaGhsgWlgw~~n~~~~a~~~a~~l~~ag~~~~~rGFatNVSNy~~~~~~~~~~~t~~n~~~~ 240 (362)
T d1qjwa_ 161 INYAVTQLNLPNVAMYLDAGHAGWLGWPANQDPAAQLFANVYKNASSPRALRGLATNVANYNGWNITSPPSYTQGNAVYN 240 (362)
T ss_dssp HHHHHHHTCCTTEEEEEECCCTTTTCSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESTTSCCCSSCSSCCGGGTTCSCCS
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999970899748999788776678743214789999999984667542327898556887766677765445675514
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 e~~Y~~~l~~~l~~~G~~~~~fVIDTsRNG~gp~~~~~~g~WCNp~G~glG~~Pt~~t~~~~vDA~lWIK~PGESDG~~~ 320 (362)
T d1qjwa_ 241 EKLYIHAIGPLLANHGWSNAFFITDQGRSGKQPTGQQQWGDWCNVIGTGFGIRPSANTGDSLLDSFVWVKPGGECDGTSD 320 (362)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEEECTTCSSSSCSCSSTTCCSSBSSCCCCSCCBSCCCCTTEEEEECCSCTTBCSCCCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
T ss_conf 89999999999985368899989857888999988767888879999847899988999876016898578826777888
Q ss_pred -----------------------------------------E
Q ss_conf -----------------------------------------8
Q 001511 467 -----------------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~~D~~c~~~~a~~~aP~AG~Wf~~~f~~Lv~nA~P~~~ 362 (362)
T d1qjwa_ 321 SSAPRFDSHCALPDALQPAPQAGAWFQAYFVQLLTNANPSFL 362 (362)
T ss_dssp TTSTTCCGGGGSTTBCSSCCSTTSBCHHHHHHHHHTCSSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 888777766676567899897777479999999972689779
|
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27182.06 Aligned_cols=1 Identities=0% Similarity=0.702 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~lske~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~h~~~GqEa~~vg~~~~l~ 80 (361)
T d2ozla1 1 FANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGIN 80 (361)
T ss_dssp CCSEEEEECCCCEEESCSCCSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSC
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 98876565353302015779988788899999999999999999999999999779875065687877999999998679
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~D~~~~~yR~~~~~la~G~~~~~~~ae~~gk~~g~~~G~~~~~h~~~~~~~~~~~ivg~~~p~A~G~A~a~k~~~~~~v 160 (361)
T d2ozla1 81 PTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEV 160 (361)
T ss_dssp TTSEEECCSCCHHHHHHTTCCHHHHHHHHTTCTTSTTTTSSCTTCCCBTTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCEECCCCCCHHEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf 55785144444210223104610223312687565566554400123466667645445655157899997654058976
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~yaist~~~~~~~~~~~~~~~~~~~~~~vdGnD~~av~~a~~~A 240 (361)
T d2ozla1 161 CLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFA 240 (361)
T ss_dssp EEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGTTTTSCEEEEETTCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 99972688766763236555554326765899986786667770110354220001365415996267705799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~R~g~gP~liE~~TyR~~gHs~~D~~~~YR~~~Ei~~~~~k~DPi~~~~~~Li~~g~~se~e~~~i~~ei~~~V~~A 320 (361)
T d2ozla1 241 AAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDA 320 (361)
T ss_dssp HHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99986069888999865568887666652124777888744413899999999999879999999999999999999999
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------8
Q 001511 467 ----------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~A~~sp~P~~~~l~~~VYa~~~p~~~~~~~~~~~~~~~~ 361 (361)
T d2ozla1 321 AQFATADPEPPLEELGYHIYSSDPPFEVRGANQWIKFKSVS 361 (361)
T ss_dssp HHHHHHSCCCCGGGTTCSSSSSCCCEEEECSBTTCEEEECC
T ss_pred HHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 99998588969899973216899807877689996116789
|
| >d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Deoxyhypusine synthase, DHS domain: Deoxyhypusine synthase, DHS species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27181.06 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~p~~a~~~v~~~s~~~p~~~~~V~g~df~~~~~~~~ll~~~~~~GFqA~~Lg~A~~i~~~Mi~~~~~~~~~~~~~~~~~~ 80 (361)
T d1dhsa_ 1 APAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLT 80 (361)
T ss_dssp CCHHHHHHHSCCCCCCCTTCCCCCCCCGGGCCCHHHHHHGGGGTCHHHHHHHHHHHHHHHHHHHHTCCC-----------
T ss_pred CCHHHHHCCEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 95045424341678899999744178778998999999999873930788999999999998752257765422222234
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~ctIfLt~agam~saGlr~~i~~LIr~g~Vd~IVtTga~lehDi~~~~g~~y~g~f~~dd~~Lr~~ginRIgd 160 (361)
T d1dhsa_ 81 QSRRPLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGN 160 (361)
T ss_dssp ------CSSEEEEEECTHHHHSTHHHHHHHHHHTTCCSEEEECHHHHHHHHHTTTSCCEECCTTCCHHHHHHTTEEEETT
T ss_pred CHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf 00125666438986144411465799999999859977898068850399999808641076568848876437651220
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 v~Ipee~~~~~e~~i~~il~~~~~e~~~~~~~~~~~e~i~~lg~~i~~~~Sil~~A~~~~vPVf~Pa~~DssiG~~l~~~ 240 (361)
T d1dhsa_ 161 LLVPNENYCKFEDWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFH 240 (361)
T ss_dssp EEEETHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHCCTTCHHHHHHHTTCCEECTTTTSSHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHH
T ss_conf 63177999999999999999999985404776464999999974268952499999982997654776516699999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~iD~~~D~~~l~~~~~~~~~~G~i~iGGGvpKh~i~~~~l~r~g~dyavqItta~~~dGslSGA~p~EaiSWG 320 (361)
T d1dhsa_ 241 SYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWG 320 (361)
T ss_dssp HHHSTTCCCCSHHHHHHHHHHHHTCSSEEEEEESCTHHHHHHHHHHHTTTSBSEEEEECCCCSTTCCSTTCCHHHHHHHT
T ss_pred HHCCCCCEEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 96189953559999999999987466762699959826378776455317998799970799986766689833013057
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------8
Q 001511 467 ----------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------~ 467 (1064)
.
T Consensus 321 Ki~~~a~~v~V~~DATIv~PLl~a~~~~k~~~~~~~~~~~~ 361 (361)
T d1dhsa_ 321 KIRVDAQPVKVYADASLVFPLLVAETFAQKMDAFMHEKNED 361 (361)
T ss_dssp SBCTTCCCEEECSCHHHHHHHHHHHTGGGGHHHHHHHTTCC
T ss_pred CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 61789883799960779999999999975401124322489
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=27179.23 Aligned_cols=1 Identities=0% Similarity=0.038 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~l~~pGP~~~~~~V~~A~~~~~~~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~ 80 (361)
T d1m32a_ 1 YLLLTPGPLTTSRTVKEAMLFDSCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVL 80 (361)
T ss_dssp CEECSSSSCCCCHHHHHTTCCCCCTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 95036999877799999851544698868999999999999999829899988999889789999999998654224653
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~ 160 (361)
T d1m32a_ 81 IVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTY 160 (361)
T ss_dssp EEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEE
T ss_pred EEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 01101223457777655301233222234678640256899874247662699843002342011234442211452146
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 240 (361)
T d1m32a_ 161 IVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSP 240 (361)
T ss_dssp EEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCC
T ss_pred EEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
T ss_conf 75200256745532233445268763034533799866789625554100024566432200111011234566678777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~~~~~p~~~~~~~~~~~~~l~~~g 320 (361)
T d1m32a_ 241 THTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQG 320 (361)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf 10446899999999985003566788899887777777622875467856649967999899988779999999999889
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------8
Q 001511 467 ----------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------~ 467 (1064)
+
T Consensus 321 i~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L~~~ 361 (361)
T d1m32a_ 321 FVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMYWT 361 (361)
T ss_dssp EECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred CEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 28978986889989984788899999999999999975999
|
| >d1x1ia1 a.102.3.2 (A:26-386) Xanthan lyase {Bacillus sp. gl1 [TaxId: 84635]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Chondroitin AC/alginate lyase family: Hyaluronate lyase-like catalytic, N-terminal domain domain: Xanthan lyase species: Bacillus sp. gl1 [TaxId: 84635]
Probab=100.00 E-value=0 Score=27178.88 Aligned_cols=1 Identities=0% Similarity=-0.825 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 sdd~~~lr~rw~~~l~g~~~~d~~d~~~~~~l~~l~~~A~~~~~~~~~~~~~~~lW~~l~~~~~~~~l~~~~~rl~~mA~ 80 (361)
T d1x1ia1 1 SDEFDALRIKWATLLTGGPALDPADSDIAARTDKLAQDANDYWEDMDLSSSRTYIWYALRGNGTSDNVNAVYERLRTMAL 80 (361)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCCTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCSCSSGGGCCTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 91899999999999708876786768999999999999997787458887766767888766630479999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 Ay~~pgs~ly~d~~l~~~I~~al~~~~~~~y~~~~~~~~~NWW~~eIg~P~~l~~~liLl~d~l~~~~~~~~~~~i~~f~ 160 (361)
T d1x1ia1 81 AATTVGSSLYGNADLKEDILDALDWLYVNSYNSTRSRSAYNWWHWQLGIPMSLNDIAVLLYDDISAARMATYMDTIDYFT 160 (361)
T ss_dssp HHHSTTCTTTTCHHHHHHHHHHHHHHHHHTSSTTSCTTSSSHHHHHTHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHC
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 98299985538999999999999999971888888998999125551757999999998514169999999998999857
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 p~~~~TGaN~~d~a~~~~~rglL~~d~~~~~~a~~~i~~~~~~~~v~~gdG~~~DgSf~qH~~~~Y~G~YG~~~l~~~~~ 240 (361)
T d1x1ia1 161 PSIGLTGAARAWQAIVVGVRAVIVKDAVKLAAARNGLSGTGIFPYATGGDGFYADGSFVQHTTFAYTGGYGSSVLETTAN 240 (361)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTSTTSSSCCSSSSEECTTSCEEETTTEECTTTHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCCEECCCCEECCCCEECCCCCHHHHHHHHHH
T ss_conf 89886530788789999999998469999999999976401305526888651478634257710167533999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~l~gT~~~~~~~~~~~l~~~i~~g~~~~i~~g~~~~~v~GR~ISR~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~ 320 (361)
T d1x1ia1 241 LMYLLSGSTWSVSDPNQSNVWQWIYEAYRPLLYKGAMMDMVRGREISRSYAQDHAVGHGIVASIVRLAQFAPAPHAAAFK 320 (361)
T ss_dssp HHHHHTTSTTCCCCGGGGHHHHHHHHTTGGGEETTEECGGGSGGGGGCTTCCHHHHHHHHHHHHHHHTTTCCTTHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99997799887887899999999996002574377016657764014788654457999999999987229999999999
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------8
Q 001511 467 ----------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~k~~~~~d~~~~~~~~~~~~~~~~~~~ll~d~~i~~~~~ 361 (361)
T d1x1ia1 321 QIAKRVIQEDTFSSFYGDVSTDTIRLAKAIVDDPSIAPAAA 361 (361)
T ss_dssp HHHHHHHHHCCSSCGGGGSCHHHHHHHHHHHTCTTCCCCCC
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999986076654235887889999999856898897879
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=100.00 E-value=0 Score=27177.79 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ 80 (361)
T d2c0ra1 1 SERAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQF 80 (361)
T ss_dssp CCCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHH
T ss_conf 99873357988188899999999987632146865434576898999999999999999968999878999788725999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~tg~~~~~~~i~~ 160 (361)
T d2c0ra1 81 AMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQDNAAYLHLTSNETIEGAQFKA 160 (361)
T ss_dssp HHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCCTTEEEEEEESEETTTTEECSS
T ss_pred HHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCEECCEEEE
T ss_conf 99985255689823898404111125555430374012102343333415555542046761489972464125115777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~al~~vDavss~g~~~id~~~~di~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (361)
T d2c0ra1 161 FPDTGSVPLIGDMSSDILSRPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPP 240 (361)
T ss_dssp CCCCTTSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCC
T ss_pred EECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 30468841899860333320234334325897413345245673799876876627443223324120003331014664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~~~~~~~~~L~~~G 320 (361)
T d2c0ra1 241 SFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEG 320 (361)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTT
T ss_pred CEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 20230115677766502424777789999998756665404654345777431454399997898546999999999788
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------8
Q 001511 467 ----------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------~ 467 (1064)
-
T Consensus 321 I~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~~~ 361 (361)
T d2c0ra1 321 FVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRSRG 361 (361)
T ss_dssp EESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred CEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 88736988678698870688999999999999999999659
|
| >d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Homocysteine S-methyltransferase family: Homocysteine S-methyltransferase domain: Betaine-homocysteine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27176.33 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~llerL~~~~ililDGgmGteL~~rG~~~~~~Ws~~~~l~~Pe~V~~iH~~yi~AGAdiI~TNTy~a~~~~l~~~g~~~ 80 (361)
T d1lt7a_ 1 KGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLENRGNYV 80 (361)
T ss_dssp CCHHHHHHTTCCEECCTTHHHHHHHHTC-------------CHHHHHHHHHHHHHHTCSEEEEEC---------------
T ss_pred CHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCHHH
T ss_conf 95889862699799978889999977999899988688852959999999999996799998278857879998613266
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~aa~~~a~~~~~~~~~~VaGsigp~~~~~~~~~~~~~~~~~~~q~~~l~~~gvD~il~ETm~~~~Ea~~a 160 (361)
T d1lt7a_ 81 LEKISGQEVNEAAADIARQVADEGDALVAGGVSQTPSYLSAKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWA 160 (361)
T ss_dssp --------CHHHHHHHHHHHHHTTTCEEEEEECCCHHHHTTCCHHHHHHHHHHHHHHHHHTTCSEEEECCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 78899999999999998510244321010256678631121104788999999899887504322336777568999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~a~~~~~~Pv~~s~t~~~~g~l~~g~~~e~~~~~~~~~~~~~g~nc~~~p~~~~~~i~~l~~~~~~~~~~~~~~~~p~~ 240 (361)
T d1lt7a_ 161 VETLIASGKPVAATMAIGPEGDLHGVPPGEAAVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAAQLKAHLMSQPLA 240 (361)
T ss_dssp HHHHGGGSSCEEEEECCBTTBSTTSCCHHHHHHHHHHTTCSEEEEESSSCHHHHHHHHHHHHHHHHHTTCCCEEEEECCS
T ss_pred HHHHHHCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 99986036608898787178863677849999988730620555214554676899999999765541455135404652
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~pn~~~~~~~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~Ga~iIGGCCGttP~HI~~la~~l~~~~~~~~p~~~~~~~ 320 (361)
T d1lt7a_ 241 YHTPDANKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKHGS 320 (361)
T ss_dssp BCCTTCCTTCGGGSTTTTTSCGGGBCCHHHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHTHHHHSSCCC-------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 33778776566789887687665647999999999999987990999898798999999999985145899998888877
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------8
Q 001511 467 ----------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 361 (361)
T d1lt7a_ 321 WGSGLDMHTKPWVRARARKEYWENLRIASGRPYNPSMSKPD 361 (361)
T ss_dssp -------------CTTSCHHHHHHCCCCCSCTTSCSCCCCC
T ss_pred CCCCEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 36776426875015446599998626678998881024898
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27173.96 Aligned_cols=1 Identities=100% Similarity=2.230 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~~~~~~df~~p~~i~eal~~~~~~~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~ 80 (361)
T d1d2fa_ 1 LLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSE 80 (361)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCC
T ss_conf 92738789799998999999999985788899899898999999999999838999802599908889999987653111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~ 160 (361)
T d1d2fa_ 81 TGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMAD 160 (361)
T ss_dssp TTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 23223233334520368998503437861133332223322211021003677416873044432233320234343200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (361)
T d1d2fa_ 161 LCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSP 240 (361)
T ss_dssp HHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSC
T ss_pred HHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 11332200010234332323333456532222233333334454444445420034132267888876510223466510
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~~~~~~~~~~~~Ll~~~gv~ 320 (361)
T d1d2fa_ 241 SVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVA 320 (361)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCEE
T ss_conf 01247889987503411210133322036778888765310223355567415999983589999999999999869999
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------8
Q 001511 467 ----------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------~ 467 (1064)
.
T Consensus 321 v~pG~~F~~~~~~~vRis~~~~~e~l~~al~rl~~~l~~lr 361 (361)
T d1d2fa_ 321 IMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR 361 (361)
T ss_dssp CEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf 98360018899987999971899999999999999999619
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=0 Score=27173.78 Aligned_cols=1 Identities=0% Similarity=1.433 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vihl 80 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL 80 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf 97999888767999999999977997899984798644277787653168847998657898999999975799999989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 Aa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~~ 160 (361)
T d1kewa_ 81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTA 160 (361)
T ss_dssp CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTSC
T ss_pred CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 60166666775999999999999999999999841222101468549999344101177866775434567887566889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~v~g~g~~~r~~i~v~D~a 240 (361)
T d1kewa_ 161 YAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHA 240 (361)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCEEEECEEHHHHH
T ss_conf 99999899999999999999999968989999138568929985769999999997499817947999689078899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~ai~~~~~~~~~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~P~ 320 (361)
T d1kewa_ 241 RALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPL 320 (361)
T ss_dssp HHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCS
T ss_pred HHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCEEEECHHHHHHHHCCCCC
T ss_conf 99999985698899699899997534777767653001233445676543255689999875531578999998799889
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------8
Q 001511 467 ----------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------~ 467 (1064)
.
T Consensus 321 ~~l~e~i~~ti~w~~~n~~~~~~~k~~~~~~~~~~~y~~~~ 361 (361)
T d1kewa_ 321 ETFESGIRKTVEWYLANTQWVNNVKSGAYQSWIEQNYEGRQ 361 (361)
T ss_dssp CCHHHHHHHHHHHHHHCHHHHHHSCCHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 89999999999999986998887661778999998515699
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=100.00 E-value=0 Score=27171.12 Aligned_cols=1 Identities=0% Similarity=0.503 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~~~~q~f~w~~~~~~~~~~gi~~kLdylk~LGv~~Iwl~Pv~~~~~~~~~~gY~~~dy~~~~~~~~~~~vd 80 (361)
T d1mxga2 1 AKYLELEEGGVIMQAFYWDVPGGGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVE 80 (361)
T ss_dssp CCSSCGGGTCCEEECCCTTCCCSSCHHHHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSS
T ss_pred CCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 93124455887999452687887855999999789999649998996957407999889998865665567543456778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~Gt~~d~~~LV~~aH~~GikVIlD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (361)
T d1mxga2 81 TRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTANYLDFHPNELHCCDEGTFG 160 (361)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCCCEEEEETTTTEEEEEECTTCTTCCSCCCGGGBSSSSSCSCCSCCCT
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78899999999999999779979998603255577656577666556545665567888766555676666554223456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~giDGfR~Daa~~v~~~f~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~ 240 (361)
T d1mxga2 161 GFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKGYGAWVVRDWLNWWGGWAVGEYWDTNVDALLSWAYESGA 240 (361)
T ss_dssp TSCBBCTTSHHHHHHHTSSTTSHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHCCCEEECCCCSCHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHCCHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHCCCC
T ss_conf 76423677605689999999987655441687604505421199999987775168733256346788998655532688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fl~NHD~~R~~~~~~a~a~llt~pGiP~iyYGd~~~~ 320 (361)
T d1mxga2 241 KVFDFPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDIIWNKYPAYAFILTYEGQPVIFYRDFEEW 320 (361)
T ss_dssp EEECHHHHHHHHHHHTTTCHHHHHHHHHTTCSSTTTCTTTEEEESCCSSCCCCSCHHHHHHHHHHSSSEEEEEHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 43041589999999944983789999862521025798781336736678010158999999982899017885897566
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------8
Q 001511 467 ----------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~d~~~f~R~gd~~~ 361 (361)
T d1mxga2 321 LNKDKLINLIWIHDHLAGGSTTIVYYDNDELIFVRNGDSRR 361 (361)
T ss_dssp SCHHHHHHHHHHHHHTCCSCEEEEEECSSEEEEEECCCSSC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCCC
T ss_conf 77079999999999716798478987799899996788889
|
| >d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Erwinia chrysanthemi, type A [TaxId: 556]
Probab=100.00 E-value=0 Score=27169.64 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~s~~~~G~a~~~ggttGG~gg~~g~v~~Vt~l~dL~~al~~~~~p~iI~v~G~I~~~~~~~~~~~~~~~~~ 80 (361)
T d1pe9a_ 1 AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKAR 80 (361)
T ss_dssp CCCCCTTTTCCCCSSSGGGSSSCCCTTTTCCGGGEEEECSHHHHHHHHTTTTSCEEEEECSEEETTTTCCCCSHHHHHHH
T ss_pred CCCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 95212111322477634351799876888848779996999999998747997089998549978887443332220223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~i~v~sn~TI~G~g~~~~i~~~gl~i~~~~~~~NVIiRnl~ir~~~~~~~~~~~~~~~~~~~Dai~i~~~s~~VwIDH~ 160 (361)
T d1pe9a_ 81 SQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHV 160 (361)
T ss_dssp SEEECCSSEEEEECTTCCEEESSEEEEEGGGTCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESC
T ss_pred CEEEECCCCEEEEECCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECC
T ss_conf 15871898579870688489621699850366426999827865575577765668775667873687517743999852
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 s~s~~~~~~~~~~~~~~~~~~~~Dg~~di~~~s~~vTiS~~~f~~h~~~~l~G~~d~~~~~d~g~~~vT~hhN~~~~~~~ 240 (361)
T d1pe9a_ 161 TISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTE 240 (361)
T ss_dssp EEECTTSCGGGCCEETTEECCCCCCSEEECTTCEEEEEESCEEEEEEECEEESCCTTCHHHHTTCCEEEEESCEEEEEEE
T ss_pred EECCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 74058766533345567630541025875057431373387546877623735677776555786259997854268757
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 R~P~~r~G~~Hv~NNy~~n~~~~~~~~~~y~~~~~~~a~il~E~NyF~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~ 320 (361)
T d1pe9a_ 241 RAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSA 320 (361)
T ss_dssp CSSEESSCEEEEESCEEEEETTCSSSCCCCSEEECTTCEEEEESCEEEEETCCGGGGGGGEEESSCCEEEEESCEETTEE
T ss_pred CCCCEECCEEEEECCEEECCCCCCCCCCCEEEECCCCCEEEEECEEEECCCCCCCCCCCEEECCCCCEEECCCEEECCCC
T ss_conf 68873076489989665368676430001565057887799985088899987553220012178877955882520741
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------8
Q 001511 467 ----------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~~~~~~~~~~~py~y~~~~~a~~v~~~V~~~AGaGkl 361 (361)
T d1pe9a_ 321 VDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL 361 (361)
T ss_dssp CCCTTSSCBCCCSCCCSCCCCCCCCHHHHHHHHHHCSTTCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 23368765555667875210456257788988744798879
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=0 Score=27175.04 Aligned_cols=1 Identities=0% Similarity=0.237 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~v~~~~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~A~~~g~~~~~~~~~~~~~~~~ 80 (361)
T d1rqga2 1 MVRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKI 80 (361)
T ss_dssp CCEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf 96599944898889873456445629999999999981599267158537650999999998299999999999986000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~f~~~~~~ 160 (361)
T d1rqga2 81 TFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYIKMQDF 160 (361)
T ss_dssp HHHHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGTTTCCBCEEEEEEEEEECGGGT
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCHH
T ss_conf 00001222233544566002344553443101368533124664100022011033213589954310263478750113
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~d~~isr~~~wg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 240 (361)
T d1rqga2 161 AERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKP 240 (361)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCH
T ss_conf 54432101335433210345542002023333333346435667654346788278750345546564566676667733
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~G~KMSKSlGN~I~~ 320 (361)
T d1rqga2 241 NEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWV 320 (361)
T ss_dssp TTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBH
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCEECCCCCCCCCCH
T ss_conf 57777654016886348734655533100148999998632565542014778978897023975898668779988788
Q ss_pred ----------------------------------------E
Q ss_conf ----------------------------------------8
Q 001511 467 ----------------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------------~ 467 (1064)
-
T Consensus 321 ~d~i~~yg~D~lR~~l~~~~p~~~d~dfs~~~~~~~~n~~~ 361 (361)
T d1rqga2 321 HEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEEL 361 (361)
T ss_dssp HHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 99998868089999999608888999889999999864589
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=0 Score=27097.98 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~ 80 (360)
T d1k32a3 1 SIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK 80 (360)
T ss_dssp ECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred CCCHHHCCCCCCCCCCEEEEEECCEEEEEECCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEE
T ss_conf 98601005146889999999989969999899994899169998888999899999999992899899999899994887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~ 160 (360)
T d1k32a3 81 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160 (360)
T ss_dssp CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred EECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCC
T ss_conf 50897127741211454321000111110000012221000000135520230121322566521233121100025654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 240 (360)
T d1k32a3 161 IHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM 240 (360)
T ss_dssp EEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGG
T ss_pred EEEECCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEECCCCC
T ss_conf 26630455713530354322110012577999999959985575333544023203641179852469601206877767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~ 320 (360)
T d1k32a3 241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL 320 (360)
T ss_dssp SCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEE
T ss_pred CCCCCCEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE
T ss_conf 15531136526654001012476752675413898569999735997069996489987999979997498864886879
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------8
Q 001511 467 ---------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------~ 467 (1064)
.
T Consensus 321 ~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~~ 360 (360)
T d1k32a3 321 RLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPLV 360 (360)
T ss_dssp EECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSCEE
T ss_pred EECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCC
T ss_conf 9999898999997899499999999985459984162259
|
| >d1qo5a_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase {Human (Homo sapiens), liver isozyme [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Human (Homo sapiens), liver isozyme [TaxId: 9606]
Probab=100.00 E-value=0 Score=27105.92 Aligned_cols=1 Identities=0% Similarity=-1.323 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~e~~~eL~~~a~~~~~~GKGiLAaDeS~gT~~Krl~~igventeenr~~yR~~l~tt~~~~~~~IsGvILfe 80 (360)
T d1qo5a_ 1 AHRFPALTQEQKKELSEIAQSIVANGKGILAADESVGTMGNRLQRIKVENTEENRRQFREILFSVDSSINQSIGGVILFH 80 (360)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHSTTSCEEEEECCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSCGGGGGTEEEEEECT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHCCEEEEECCH
T ss_conf 99877689999999999999981489879982689983777898769999779999998888518703435656898369
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 eTl~q~~~~g~~~~~ll~~kGIvPgIKVDkGl~~l~~~~ge~~t~gLdgL~~Rl~~y~~~Ga~faKwRaVi~i~~~~ps~ 160 (360)
T d1qo5a_ 81 ETLYQKDSQGKLFRNILKEKGIVVGIKLDQGGAPLAGTNKETTIQGLDGLSERCAQYKKDGVDFGKWRAVLRIADQCPSS 160 (360)
T ss_dssp TGGGCBCTTSCBHHHHHHHTTCEEEEECCCCEEECTTSSSCEEECCCTTHHHHHHHHHHTTCCEEEEEEEECCBTTBSCH
T ss_pred HHHHHHCCCCCCHHHHHHHCCCEEEEECCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCH
T ss_conf 99841423677466899865963578348750007667765335662018899999986474445212200245577745
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~I~~na~~laryA~i~q~~GLVPIVEPEVlidg~h~~e~~~~vt~~vl~~l~~~l~~~~V~LeG~lLKpnMv~pG~~~~ 240 (360)
T d1qo5a_ 161 LAIQENANALARYASICQQNGLVPIVEPEVIPDGDHDLEHCQYVTEKVLAAVYKALNDHHVYLEGTLLKPNMVTAGHACT 240 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEECCBCCCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88999999999999999971976431433245788746889999999999999887652134678742001025511055
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~va~~Tv~~l~~~vp~~VpgIvfLSGGqS~eeAt~~LnamN~~~~~~pW~lsfSygRALQ~s~Lk~W~g~~~n~ 320 (360)
T d1qo5a_ 241 KKYTPEQVAMATVTALHRTVPAAVPGICFLSGGMSEEDATLNLNAINLCPLPKPWKLSFSYGRALQASALAAWGGKAANK 320 (360)
T ss_dssp CCCCHHHHHHHHHHHHHHHSCTTCCEEEEBCTTCCHHHHHHHHHHHHHCSSCCCSEEEEEESGGGTHHHHHHHTTCGGGH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCHHH
T ss_conf 55787888899887764303667871001688744888999999986157899976899643756189999857881428
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------8
Q 001511 467 ---------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------~ 467 (1064)
.
T Consensus 321 ~~aQ~~~~~ra~~Ns~A~~G~y~~~~~~~~~~~~~lfva~ 360 (360)
T d1qo5a_ 321 EATQEAFMKRAMANCQAAKGQYVHTGSSGAASTQSLFTAC 360 (360)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCCCSCCCHHHHSCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCC
T ss_conf 9999999999986068756740788887865443003139
|
| >d1sq1a_ d.258.1.1 (A:) Chorismate synthase, AroC {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Chorismate synthase, AroC superfamily: Chorismate synthase, AroC family: Chorismate synthase, AroC domain: Chorismate synthase, AroC species: Campylobacter jejuni [TaxId: 197]
Probab=100.00 E-value=0 Score=27105.27 Aligned_cols=1 Identities=0% Similarity=0.570 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 mntfG~~~r~tt~GESHG~~lg~vidG~PaGl~i~~e~I~~~L~RR~pg~~~~t~R~E~D~veilSGv~~G~TtG~PI~~ 80 (360)
T d1sq1a_ 1 MNTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELDKRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAI 80 (360)
T ss_dssp CCEECSSSEEEEECCGGGSCEEEEEECCCSSCBCCHHHHHHHHHHTTC-----------CCEEECSSEETTEECSSCEEE
T ss_pred CCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCEEEE
T ss_conf 98775523898525578884489993409588609999999996179999889867888717992263689876750078
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~D~RgggRsSaReTa~rVaaGaiAk~lL~~~gI~v~s~v~~IG~~~ 160 (360)
T d1sq1a_ 81 VVFNENAHSKDYDNLKDLFRPAHADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLREFDICVQSGVFGVGTFV 160 (360)
T ss_dssp EEC----------------------------------------CCCTHHHHHHHHHHHHHHHHTTTCEEEEEEEEETTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEEEEEEE
T ss_conf 88716787310466623678750777876553985776887515999999999999999999862100666788996661
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~s~vrc~d~~~~~~m~~~I~~ak~~gDSvGG~ve~~~~gvP~GLG~p~fdkLda~LA~A~mSIpAv 240 (360)
T d1sq1a_ 161 SNLKEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGLGEVLYDKLDSKLAHALMGINAV 240 (360)
T ss_dssp CCSCGGGSCHHHHHHSTTCBSCTTTHHHHHHHHHHHHHTTCCCCEEEEEEEESCCBSCSBTTTBCHHHHHHHHHHTSTTE
T ss_pred CCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCEECCCCCHHHHHHHHCCCCC
T ss_conf 47776646877732573347546778999999999854578763189999846997648601365135888777336310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 KGVE~G~Gf~~a~~~GSe~nD~~~~~~~~tN~~GGi~GGiSnG~pi~~rva~KP~sSi~k~q~TVd~~~~~~~~~~~gRh 320 (360)
T d1sq1a_ 241 KAVEIGEGINASKMRGSCNNDALKDGKFLSNHSGGILGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLKFELKGRH 320 (360)
T ss_dssp EEEEETTGGGGGGSCHHHHCCCCSSSSCSCCTTCSEETTEEBSSCEEEEEEECCCC---------------------CCS
T ss_pred EEEEECCCHHHHHHHHHHCCCHHHCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 01530565565420066462222136644456786000235888628999978875567753222178988788557877
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------8
Q 001511 467 ---------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------~ 467 (1064)
-
T Consensus 321 Dpc~vprA~~V~Eam~a~vlad~~L~~~~~~~~~~~~~~g 360 (360)
T d1sq1a_ 321 DPCVGVRGSVVASAMVRLVLADCLLLNASANLNNLKNAYG 360 (360)
T ss_dssp CSCTHHHHHHHHHHHHHHHHHHHHHHTGGGSHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 8707165049999999999999999845779999875449
|
| >d1jdwa_ d.126.1.2 (A:) L-arginine: glycine amidinotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Amidinotransferase domain: L-arginine: glycine amidinotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27103.53 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~vn~~sE~~~Lk~VivGr~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ea~ee~d~l~~~Le~~GV~V~r 80 (360)
T d1jdwa_ 1 CPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKANTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRR 80 (360)
T ss_dssp CCCBBCBSSSCEEEEEECBCTTCBCCCCCHHHHTTSCGGGHHHHHHHTTSBSCHHHHHHHHHHHHHHHHHHHHTTCEEEC
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 99722767463739999517767799976221347856665542332146455999999999999999999876967861
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~~~~~RD~~~~ig~~~i~~~~~~~~r~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (360)
T d1jdwa_ 81 PDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELY 160 (360)
T ss_dssp CCCCCTTCEEECSSCEEECCCBCCHHHHEEEEBTEEEECCBSCGGGTTGGGGTHHHHHHHHHTTCEEEECCCCCCCGGGB
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 46233310101000003675545476202663794233333456553524454157887514675304435543345333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~H 240 (360)
T d1jdwa_ 161 NQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMH 240 (360)
T ss_dssp CTTCCCSSHHHHHHHHHHTCCSBCSSSCCBCGGGEEEETTEEEECCCSSCCHHHHHHHHHHHTTTCEEEECCBSSCCSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCEEECCCCEEECCCCEEECCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHCC
T ss_conf 45544544454321112463254055125425420111652120234422135899998644665311102336733327
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 lD~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~N~LsI~p~~Vi~~~~n~~~~~~L 320 (360)
T d1jdwa_ 241 IDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMF 320 (360)
T ss_dssp STTTEEEEETTEEEECTTSCBTTHHHHHHTTCEEECCCCCCCCTTSCCSSSCGGGGGCCEEEETTEEEEETTCHHHHHHH
T ss_pred CCCEEEEECCCCEEEECCCCCHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHCCEEEEEEECCCEEEECCCCHHHHHHH
T ss_conf 66226871587189951336355531332585358535223454542153453051589997699999908889999999
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------8
Q 001511 467 ---------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~Gi~vi~i~~~e~~~~~GG~~CmT~pl~Reg~~e~y~~ 360 (360)
T d1jdwa_ 321 EKLGITTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYLD 360 (360)
T ss_dssp HHTTCEEEEECCHHHHTTTCCTTTTEEEEEESCCCCCSCC
T ss_pred HHCCCEEEEECHHHHHCCCCCCEEECCCEEECCCCCCCCC
T ss_conf 9888989992626543159997384725087786554669
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=100.00 E-value=0 Score=27099.01 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~W~~~w~~~a~~~~~~a~~~~~~g~~~~A~~~~~~A~~~~~~a~~~~~ 80 (360)
T d2jbwa1 1 KPEDEMDNWGRLILDGVSYSDMVGARDRPKEITWFDYWMSLANEYEQEAERKVALGHDLSAGELLMSAALCAQYAQFLWF 80 (360)
T ss_dssp CHHHHHCCHHHHHHHTCCHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 92658888776761797589998630689942799999999999999999999769987899999999999997356557
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~ip~dg~~l~g~l~~P~~~~~~P~Vi~~hG~~~~~e~~~~~~~~l~~~G~~ 160 (360)
T d2jbwa1 81 DERRQKGQARKVELYQKAAPLLSPPAERHELVVDGIPMPVYVRIPEGPGPHPAVIMLGGLESTKEESFQMENLVLDRGMA 160 (360)
T ss_dssp STHHHHHHHHHHHHHHHHGGGSSSCEEEEEEEETTEEEEEEEECCSSSCCEEEEEEECCSSCCTTTTHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 93677899999999999986479873996357677666239993699999529999379876477899999999966998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 vl~~D~~G~G~s~~~~~~~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~pri~a~V~~~~~~~~~~ 240 (360)
T d2jbwa1 161 TATFDGPGQGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPRLAACISWGGFSDLDY 240 (360)
T ss_dssp EEEECCTTSGGGTTTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCTTCCEEEEESCCSCSTT
T ss_pred EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHH
T ss_conf 99971642223576555656699999999999996600155553423331050999987515987554999746555777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~vp~~~~~~l~~~~~~~~~~l~~~~~g 320 (360)
T d2jbwa1 241 WDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDEVPLSFVDTVLELVPAEHLNLVVEKDG 320 (360)
T ss_dssp GGGSCHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSSSCTHHHHHHHHHSCGGGEEEEEETTC
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 75433456677777506873577889877406645467527999899972999928999999999657998599997999
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------8
Q 001511 467 ---------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------~ 467 (1064)
+
T Consensus 321 ~H~~~~~~~~~~~~i~dWl~~~L~~g~~~apt~~~~p~~~ 360 (360)
T d2jbwa1 321 DHCCHNLGIRPRLEMADWLYDVLVAGKKVAPTMKGWPLEH 360 (360)
T ss_dssp CGGGGGGTTHHHHHHHHHHHHHHTSSCCCCCCEESCSCC-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 9677767579999999999998314897899877788889
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=100.00 E-value=0 Score=27101.46 Aligned_cols=1 Identities=0% Similarity=0.470 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~nF~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~ 80 (360)
T d1w23a_ 1 VKQVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQF 80 (360)
T ss_dssp CCCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHH
T ss_conf 98436707988488999999999998753046865434576788999999999999999968999878999478489999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~i~~ 160 (360)
T d1w23a_ 81 TMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQN 160 (360)
T ss_dssp HHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEECSS
T ss_pred HHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHCCCCCCCCEEEECCCCCCCCEEEEE
T ss_conf 99876411467654155324123334788777640201202444453201112200335553213754881665104432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (360)
T d1w23a_ 161 FPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPP 240 (360)
T ss_dssp CCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCC
T ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 21463036986113453432243565542488504434457765046703434313445774200124543100013331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~~~~~~~~~~~l~~~G 320 (360)
T d1w23a_ 241 TFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQG 320 (360)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHHHHHHHHHHHHTT
T ss_pred CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 20120015778777641004899999999999888887633520036888201640699998599735999999999789
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------8
Q 001511 467 ---------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------~ 467 (1064)
-
T Consensus 321 I~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~~~~ 360 (360)
T d1w23a_ 321 FVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKENA 360 (360)
T ss_dssp EESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf 8665077766717899508999999999999999998559
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27101.20 Aligned_cols=1 Identities=0% Similarity=-0.891 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~nF~pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a 80 (360)
T d1bjna_ 1 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAA 80 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHH
T ss_conf 93774798858899999999998751024686543457678899999999999999996899997799978826888863
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~~~~i 160 (360)
T d1bjna_ 81 VPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDET 160 (360)
T ss_dssp HHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEETTEEEECCGGGCCCCSSCSCEEECSEETTTTEECCCC
T ss_pred HHHCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCE
T ss_conf 00102566543330035630344687776417632121012477764035666412577604999655555457652100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~v~vDa~~~~~~~~vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (360)
T d1bjna_ 161 PDFGADVVVAADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPP 240 (360)
T ss_dssp CCCCTTCCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCC
T ss_pred ECCCCCCEEEEEEECCCCCEEEEECCCEEEEEECCCCCCCCCCCEEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 01244522565662352424436513305999726665447776267641012211446774112678876532024444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~~~~~~~~~~l~~~Gi 320 (360)
T d1bjna_ 241 TFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSALDKLFLEESFAAGL 320 (360)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHHHHHTTE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 30278889999988641068999999999999988755335430125774344523999875885249999999997898
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------8
Q 001511 467 ---------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~~~~ 360 (360)
T d1bjna_ 321 HALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRHG 360 (360)
T ss_dssp ECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 7634877567388983488999999999999999999739
|
| >d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: AF1104-like superfamily: AF1104-like family: AF1104-like domain: Hypothetical protein At2g17340 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=27100.63 Aligned_cols=1 Identities=0% Similarity=-1.490 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~v~~pll~~~~~~~y~~~tv~~~~~~~~~~~~~~~~~~Wl~~f~~~i~~~~~~A~s~~~~~da~~Ra~~f~~~y~~~L~ 80 (360)
T d1xfia_ 1 EMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAESDITVPDAPARAEKFAERYAGILE 80 (360)
T ss_dssp CCBCCTTSCSCCTTTCCSBCSCCCCTTSCTTSCCHHHHHHHHHHHTTHHHHHHHHHTCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 97566466774213766887788887555221526677999999977889999985089999889999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~l~~~p~~~g~~~~~~ll~~~re~~Lr~~Gf~DpY~~~K~~eN~~Al~~lp~~~~~id~i~d~~~~l~~~vr~aiAGNif 160 (360)
T d1xfia_ 81 DLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIF 160 (360)
T ss_dssp HHHHCTTGGGCSCCHHHHHHHHHHHHHHTTCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99848765576017889999999999976999800999999999999987999999753016079999999999987764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 D~Ga~~~~~~~~~~~~~~~~~~~~~~~rp~~vDd~d~~~~rl~~~~~k~vly~~DNaGe~Vfd~lL~~~rell~~g~~V~ 240 (360)
T d1xfia_ 161 DLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVV 240 (360)
T ss_dssp ---------------CCHHHHTTCSCCSSCSEECHHHHHHHHTTTCCCEEEEECCBTTHHHHHTHHHHHHHHHHTTCEEE
T ss_pred HCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 30220021444046426999999854589753669999998735775407999358734999887899999965898499
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 l~v~~~PilNDvT~~El~~~~~~~~~~~~~~~gld~~~~~Vv~sG~~~Pg~dL~~~s~E~~~~~~~aDLVI~KGMGr~~~ 320 (360)
T d1xfia_ 241 LAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGRGIE 320 (360)
T ss_dssp EEEBSSCCTTBCBHHHHHHHHHHHC--CCEETTEECTTEEEEECCCCSSSCCTTSBCHHHHHHHTTCSEEEEESHHHHTT
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHCCCEEEECCCCCHHH
T ss_conf 99888752336249999999998751205765202135189657999887185768999999983699999828751132
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------8
Q 001511 467 ---------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------~ 467 (1064)
.
T Consensus 321 tN~~a~f~c~~lkL~~vK~~~vA~~lGg~~~d~V~k~~~~ 360 (360)
T d1xfia_ 321 TNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEV 360 (360)
T ss_dssp BSTTCCCSSEEEEEEECCCHHHHHHHTCCTTCEEEEEECC
T ss_pred CCCHHHCCCCEEHHHHHCCHHHHHHHCCCCCCEEEEECCC
T ss_conf 0101322788103334258999999499611279982479
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=100.00 E-value=0 Score=27101.08 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~~~L~~lGl~~~i~~~~~~~ 80 (360)
T d1pn0a1 1 TKYSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDM 80 (360)
T ss_dssp CCEEEEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCC
T ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCC
T ss_conf 99888788989989598999999998705332489868998689998868859998989999999869838999626776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~dg~~s 160 (360)
T d1pn0a1 81 STIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAY 160 (360)
T ss_dssp CEEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCC
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEEECCCC
T ss_conf 31599722667741112455543333344320253188999999999986165411356732563688638999605776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (360)
T d1pn0a1 161 PVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFEMI 240 (360)
T ss_dssp CEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHHHHHTCCCE
T ss_pred CEEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCC
T ss_conf 35999998404566542331113787058866327765512456865302368888777631754332001011221110
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~l~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~ 320 (360)
T d1pn0a1 241 VTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRL 320 (360)
T ss_dssp ECSCSEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTTCBCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHEEECCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 14444646928983675432050457887520889999999888876589738999999999999999999999999998
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------8
Q 001511 467 ---------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~G~~~~y~~ 360 (360)
T d1pn0a1 321 FSGRPAKDVADEMGVSMDVFKEAFVKGNEFASGTAINYDE 360 (360)
T ss_dssp HHSCBCSSTTCTTSBCHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred HCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCCC
T ss_conf 7799368888860335587899999865554330766688
|
| >d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FabD/lysophospholipase-like superfamily: FabD/lysophospholipase-like family: Patatin domain: Patatin species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]
Probab=100.00 E-value=0 Score=27097.03 Aligned_cols=1 Identities=100% Similarity=1.201 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
+
T Consensus 1 ~~~~v~iLsldGGG~rG~~~~~vL~~L~~~~~~~~~~~~~~~~d~fD~i~GTS~Gaiia~~la~g~~~~~~~~~~~~~~~ 80 (360)
T d1oxwa_ 1 LGEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEIVP 80 (360)
T ss_dssp CCSCEEEEEECCCGGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSSCGGGHHH
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99700899989878999999999999997497234667997142099999963999999999869970318999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 160 (360)
T d1oxwa_ 81 FYFEHGPQIFNPSGQILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDIS 160 (360)
T ss_dssp HHHHHHHHHTCCCCCSSSCSCCCHHHHHHHHHHHTTCBGGGCSSEEEEEEEETTTTEEEEEESSSTTTCGGGCCBHHHHH
T ss_pred HHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHH
T ss_conf 99861210100123346764546999999999958701332167532673015888748973644356886322698861
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~ASsA~P~~F~p~~~~~~~~~~~~~~~~~~Dgg~~~~nnp~~~a~~e~~~l~~~~~~~~~~~~~~~~~~~~~s~gtg~~~ 240 (360)
T d1oxwa_ 161 YSTAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYKKMLLLSLGTGTTS 240 (360)
T ss_dssp HHHHCCTTTSCCEEEEEECTTSCEEEEEEEEGGGGTCSSCHHHHHHHHHHHTTTCGGGTTSTTCCGGGEEEEEECCCCBC
T ss_pred HHHHCCCCCCCCEEEECCCCCCCCEEEEECCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 15513887778779732247787326774033542256726778999987624675322245677663155314666664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~R~~~~~~~~~~~~lDd~s~~~l~~l~~ 320 (360)
T d1oxwa_ 241 EFDKTYTAKEAATWTAVHWMLVIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQ 320 (360)
T ss_dssp TTSSCCCHHHHTTCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCGGGEEEECCCCBCGGGGCTTCCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 33333212442001167689999999876559999999999987447988479974886656541146899999999999
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------8
Q 001511 467 ---------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------~ 467 (1064)
-
T Consensus 321 ~g~~~~~~~~~~~~~~~~~~~L~~~~~~L~~er~~r~~~~ 360 (360)
T d1oxwa_ 321 VGENLLKKPVSEDNPETYEEALKRFAKLLSDRKKLRANKA 360 (360)
T ss_dssp HHHHHHTSBSSSSCCCBHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999996330343066799999999999999998763059
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=100.00 E-value=0 Score=27095.33 Aligned_cols=1 Identities=0% Similarity=-0.626 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (360)
T d1kdga1 1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPFWWCKDI 80 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCTTBCTTB
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 95778998968899999999801879699998168987666543454422215764246763212211488755478655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~G~~lGGsS~in~~~~~r~~~~D~~~~~gwp~~~~~l~py~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g 160 (360)
T d1kdga1 81 TVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHAPYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQG 160 (360)
T ss_dssp SSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCCGGGSCCHHHHHHHHHHSCCBSCCSTTSCCCSCHHHHHHHHHHHTTT
T ss_pred CCCCEEEECCHHCCCCCCCCCCCHHHHEECCCCCCCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 43101220111011333112244022100246653333013444333202332110037886344422589999999853
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~G~R~s~~~~yl~~a~~r~nl~i~t~~~V~rI~~d~~ra~GV~~~~~~~~~~~~~ 240 (360)
T d1kdga1 161 YNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFI 240 (360)
T ss_dssp CEECCGGGSTTCCTTEEEECCBCEETTEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEE
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCEEE
T ss_conf 16787455788544321000120135322322211356664266300104867999997299899999985236762489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~v~a~~eVILsAGai~SP~LLl~SGIGp~~~L~~~gi~p~v~~~l~~~~~~~~~p~g~~~~~~~~~~~v~~~~~~~~g~~ 320 (360)
T d1kdga1 241 PVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMTTIGSSPQSAVVDSNVKVFGTN 320 (360)
T ss_dssp EEEEEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTSHHHHHHSCCGGGCBCCCTTTTCBCSCTTTCSBCTTCBBTTCS
T ss_pred EEEECCEEEEECHHHHCHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEECCCCCCCCEECCCCEEECCC
T ss_conf 99979999993656747299986589955666775328643445546453133663200017897562777531463368
Q ss_pred ---------------------------------------E
Q ss_conf ---------------------------------------8
Q 001511 467 ---------------------------------------K 467 (1064)
Q Consensus 467 ---------------------------------------~ 467 (1064)
-
T Consensus 321 ~l~~~~a~~~p~~~~~~~~~~~~~~ae~aa~~il~~~~~~ 360 (360)
T d1kdga1 321 NLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKILALAGGP 360 (360)
T ss_dssp SEEECSGGGCSSCCSSCSHHHHHHHHHHHHHHHHHSTTCC
T ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 8368854036545789977556588999998875204899
|
| >d4bcla_ b.75.1.1 (A:) Bacteriochlorophyll A protein {Prosthecochloris aestuarii, strain 2k [TaxId: 1102]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Bacteriochlorophyll A protein superfamily: Bacteriochlorophyll A protein family: Bacteriochlorophyll A protein domain: Bacteriochlorophyll A protein species: Prosthecochloris aestuarii, strain 2k [TaxId: 1102]
Probab=100.00 E-value=0 Score=27033.92 Aligned_cols=1 Identities=0% Similarity=0.071 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 tTtA~~Dyeiileggssswg~vk~rakvNVP~a~pllp~dc~iKi~~Kpl~~~kgvVR~t~~ieSiVDstknkl~vE~DI 80 (359)
T d4bcla_ 1 TTTAHSDYEIILEGGSSSWGQVKGRAKVNVPAAIPLLPTDCNIRIDAKPLDAQKGVVRFTTKIESVVDSVKNTLNVEVDI 80 (359)
T ss_dssp CCEEEEEEEEEECCTTCCCEEEEEEEEECSCCCCSSCCEEEEEEEEEEECC---CCEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEHHHHHHHCCEEEEEEEE
T ss_conf 94212334789707876531023567603898777766666227620205776786999864045776401404899862
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ANEtkdrRiavGEG~vsVGdFSH~FsfEGsVvnl~YyRsdavrrNvpnp~ymqGrqfHDi~mkVPldn~dlIdTWe~~~~ 160 (359)
T d4bcla_ 81 ANETKDRRIAVGEGSLSVGDFSHSFSFEGSVVNMYYYRSDAVRRNIPNPIYMQGRQFHDILMKVPLDNNDLVDTWEGFQQ 160 (359)
T ss_dssp EESSSSEEEEEEEEEEEETTEEEEEEEEEEEEEEESCCCHHHHTTCSSCCCCCEEEEEEEEEEEECCSHHHHHHHHHHHH
T ss_pred CCCCCCCEEEECCCEEEECCCEEEEEEEEEEEEEEEECCHHHHHCCCCCEEECCCCHHHEEEECCCCCHHHHHHHHHHHH
T ss_conf 35787640673243387602224578620488999950146763599865552731100478558995568899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 a~~~~~~nF~dwIrdfWfIGPa~~al~egGQ~is~I~v~~~~~e~g~k~pvgv~rwrfsh~gsgivdsisrw~elfp~d~ 240 (359)
T d4bcla_ 161 SISGGGANFGDWIREFWFIGPAFAAINEGGQRISPIVVNSSNVEGGEKGPVGVTRWKFSHAGSGVVDSISRWTELFPVEQ 240 (359)
T ss_dssp HC---CCSHHHHHHHHHSTTTHHHHHHHTTEEECCCEEEEEEEECC---CEEEEEEEEEEEESSCCHHHHTTTTTCCGGG
T ss_pred HHHCCCCCHHHHHHHHEEECHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCHHH
T ss_conf 87538974566556514522778888752730330799741025688787553267863787510226777887477634
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 l~~pa~ieg~frsdsqgievkvdg~lpgvsvdaggg~rrilnhpliplvHHGmvgk~n~f~vd~q~kv~lPkGyK~ryaA 320 (359)
T d4bcla_ 241 LNKPASIEGGFRSDSQGIEVKVDGNLPGVSRDAGGGLRRILNHPLIPLVHHGMVGKFNDFTVDTQLKIVLPKGYKIRYAA 320 (359)
T ss_dssp CSSCEEEEEEEEECSSCEEEEEEEEETTSEEEEETTEEEECCCCHHHHHHHTTTTTSSCCEEEEEEEEECCTTCEEEEEE
T ss_pred CCCCCEECCCCCCCCCCEEEEEECCCCCEEECCCCCCHHHHCCCCCCEEECCCEECCCCCCEEEEEEEECCCCCEEEECC
T ss_conf 39850441454456774489982456860442788722441688620031230312577613368999726871676516
Q ss_pred --------------------------------------E
Q ss_conf --------------------------------------8
Q 001511 467 --------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------~ 467 (1064)
+
T Consensus 321 pqf~sqn~eey~wsGG~Ya~W~EhvCKGg~gqF~ilyaq 359 (359)
T d4bcla_ 321 PQFRSQNLEEYRWSGGAYARWVEHVCKGGTGQFEVLYAQ 359 (359)
T ss_dssp SCCSEEETTEEEEESHHHHHHHHHHHTTCCCCCEEEEEC
T ss_pred CHHHHCCHHHEEECCCHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 301001254368637147888875414887754788429
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=0 Score=27030.38 Aligned_cols=1 Identities=0% Similarity=1.101 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~i~d~~~~A~~~lp~~~~~y~~gga~~~~t~~~N~~~Fd~i~l~pr~L~d~~~iDlst~~lG~~~~~P~~IspMtg 80 (359)
T d1goxa_ 1 MEITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAM 80 (359)
T ss_dssp CCCCSTTHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSC
T ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEECCCCCCCCEEECCCCC
T ss_conf 95467999999999868888889870567741999999999984626331246887798755678835578615265323
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 g~~~~~~~e~~lA~aA~~~gi~~~~~s~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~vd~~~ 160 (359)
T d1goxa_ 81 QKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 160 (359)
T ss_dssp GGGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSS
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 46677864787656688629722334554565023677469984112222106778999999888754033442224102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~kg~~~~~da~~ 240 (359)
T d1goxa_ 161 LGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARL 240 (359)
T ss_dssp CCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHH
T ss_conf 22344412442357853314566553036676556411799998513788999999999861566532200244688899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 a~~~g~~~~~vsnhggr~ld~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L~~la~~g~ 320 (359)
T d1goxa_ 241 AVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGE 320 (359)
T ss_dssp HHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHH
T ss_pred HHHCCCCCEECCCCCCCCCCCCCCHHHHCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCH
T ss_conf 98706653220321110000000025445566503478621465057575778999998489989876899999984349
Q ss_pred --------------------------------------E
Q ss_conf --------------------------------------8
Q 001511 467 --------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------~ 467 (1064)
+
T Consensus 321 ~gv~~~i~~l~~EL~~~M~l~G~~~i~~L~~~~l~~~~~ 359 (359)
T d1goxa_ 321 AGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWD 359 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSBTTTCCGGGEEETTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHCCCCCC
T ss_conf 999999999999999999985899978959954657899
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=100.00 E-value=0 Score=27027.00 Aligned_cols=1 Identities=0% Similarity=1.101 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 m~~~~~l~M~gG~G~~SYa~NS~~Q~~~i~~~kp~leeai~~~~~~~~~~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~ 80 (359)
T d1m6ex_ 1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEEL 80 (359)
T ss_dssp CCCHHHHCCCCCTTSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHH
T ss_pred CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98417603379998533999999999999998999999999624677899865999727899965799999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~ 160 (359)
T d1m6ex_ 81 RKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIE 160 (359)
T ss_dssp HHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCC
T ss_pred HHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHCCCCCCEEEEEEHHHHHHHHCCCCCCC
T ss_conf 98638999972899847888526799998463012678875898657722320178874577642003344303885445
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eG 240 (359)
T d1m6ex_ 161 SNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEG 240 (359)
T ss_dssp CCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTT
T ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 78886797479998999999999999999999999998357857999985567898888863518999999999999859
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 lI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~~~~~~~~~~~~~~~~d~~~~~~~~a~~~RA~~e~~l~~hf 320 (359)
T d1m6ex_ 241 LIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHF 320 (359)
T ss_dssp CSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTCCSSCTTCCSSTTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98899997316842668889999885148975655447654154201223444565889999999999999999999985
Q ss_pred --------------------------------------E
Q ss_conf --------------------------------------8
Q 001511 467 --------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------~ 467 (1064)
.
T Consensus 321 g~~i~D~lF~r~~~~v~~~~~~~~~~~~~~~~sL~rK~~ 359 (359)
T d1m6ex_ 321 GEAIIEDVFHRYKLLIIERMSKEKTKFINVIVSLIRKSD 359 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCCEEEEEEEEEEBCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCC
T ss_conf 828899999999999996076549953999999996689
|
| >d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Alcohol dehydrogenase TM0920 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=27021.72 Aligned_cols=1 Identities=0% Similarity=0.038 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~f~f~~P~~i~fG~g~l~~l~~~~~~~g~k~liV~~~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~~p~~~~v~~~~~ 80 (359)
T d1o2da_ 1 VWEFYMPTDVFFGEKILEKRGNIIDLLGKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVE 80 (359)
T ss_dssp CCCCCCCCEEEESTTHHHHHGGGGGGTCSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHH
T ss_pred CEECCCCCEEEEECCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 93737999899948999999999997599589998586888740999999999876984999757468979899987642
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~D~IIavGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtgse~t~~avi~~~~~~~k~~ 160 (359)
T d1o2da_ 81 RYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTGSEVTPYSILTDPEGNKRGC 160 (359)
T ss_dssp HHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCCGGGCCEEEEECTTSCEEEE
T ss_pred HCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCHHCCCHHHHHHHHHCCCCC
T ss_conf 00135775688516642001899999998489971331167534457787588426455422114214545675500102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~P~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s~~~~~~~~~~a~~ai~~~~~~l~~~~~~~~~a~~~l~~as 240 (359)
T d1o2da_ 161 TLMFPVYAFLDPRYTYSMSDELTLSTGVDALSHAVEGYLSRKSTPPSDALAIEAMKIIHRNLPKAIEGNREARKKMFVAS 240 (359)
T ss_dssp ECCCCSEEEECGGGGGGCCHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 35778768860754058534445665317999988876400255156688999999999876532104699999877899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~g~a~~~~g~g~~Hai~h~l~~~~~i~HG~~~ai~lp~v~~~~~~~~~ek~~~ia~~lg~~~~~~~~~lglp~~lg~~ 320 (359)
T d1o2da_ 241 CLAGMVIAQTGTTLAHALGYPLTTEKGIKHGKATGMVLPFVMEVMKEEIPEKVDTVNHIFGGSLLKFLKELGLYEKVAVS 320 (359)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTTCHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99987551678644410245213303877412578879999999998759999999999889999999985991005979
Q ss_pred --------------------------------------E
Q ss_conf --------------------------------------8
Q 001511 467 --------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~i~~~~~~a~~~~~~~~np~~~t~e~i~~il~~alg~ 359 (359)
T d1o2da_ 321 SEELEKWVEKGSRAKHLKNTPGTFTPEKIRNIYREALGV 359 (359)
T ss_dssp HHHHHHHHHHHTTCGGGGGSSSCCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 999999999987385021899468999999999987669
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27024.06 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~l~~~~~~~~~r~~d~~fa~~~~~~~~~~~~l~~al~s~~~~~Gh~cl~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T d1w36d1 1 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNW 80 (359)
T ss_dssp CTHHHHHHHHHTTSSCHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHTTCSEEETTTTTTGGGGSSSCCCCSSCCTTCSTH
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCHHHCCCCCHHHH
T ss_conf 96899999998183568999999998558985899999999999839997627999751200244430222155558999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~l~~~~~v~~~~~~~p~vl~~~~lyl~~~~~~E~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~A~~~a 160 (359)
T d1w36d1 81 EECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVA 160 (359)
T ss_dssp HHHHHHSTTEESSSSCCSEEECSSEEEEHHHHHHHHHHHHHHTSCCBCCCCCHHHHHHHHHTTCCCTTSCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCEEEECCEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 99987276656777888658778884047899999999999998637799983789999997465765663899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 l~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~~~~~~~~~~~~~~~~t~~ 240 (359)
T d1w36d1 161 LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLH 240 (359)
T ss_dssp HTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTT
T ss_pred HCCCEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 70885999768988752169999999999875269828984375999999998887777645810445542013455789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~ll~~~~~~~~~~~~~~~~l~~d~lIIDEaSmv~~~l~~~ll~~~~~~~~lILvGD~~QLppV~~G~vl~dl~~~~~~~~ 320 (359)
T d1w36d1 241 RLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF 320 (359)
T ss_dssp SCC-----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCC
T ss_pred HHHHHHHCCHHHHHHHHCCCCCCEEEEHHHHCCCHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHCCC
T ss_conf 98763100067777543666541346533214489999999987259998999777221668788818999999773477
Q ss_pred --------------------------------------E
Q ss_conf --------------------------------------8
Q 001511 467 --------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~~~~l~r~~~~~~~~~~~~~~~~i~d~l~~L~knyR 359 (359)
T d1w36d1 321 TAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 359 (359)
T ss_dssp CHHHHHHHHHHSSSCCCCCSTTTTHHHHTTEEECCCCCC
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCHHCCHHHCCCCCCC
T ss_conf 899999999985410001333334202172112545789
|
| >d1yvra1 a.118.25.1 (A:5-363) 60-kda SS-aARo ribonucleoprotein {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TROVE domain-like family: TROVE domain-like domain: 60-kda SS-aARo ribonucleoprotein species: African clawed frog (Xenopus laevis) [TaxId: 8355]
Probab=100.00 E-value=0 Score=27023.89 Aligned_cols=1 Identities=0% Similarity=0.237 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~q~~p~~~~qv~N~aGg~a~~~~~~~~L~rfl~~Gt~~~tyY~~~~~l~~e~~~~l~~l~~~~~~~~~v~~l~~~~~~g 80 (359)
T d1yvra1 1 MDQTQPLNEKQVPNSEGCYVWQVSDMNRLRRFLCFGSEGGTYYIEEKKLGQENAEALLRLIEDGKGCEVVQEIKTFSQEG 80 (359)
T ss_dssp CCTTSCSSTTCEECTTSCEEEECCHHHHHHHHHHHCCTTCCSSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 98777698211556667720369989999999961368986745826526889999999997278278999999998437
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~r~~p~l~aLal~a~~~d~~~r~~a~~~~~~v~r~~~~L~~fv~~~~~~~~~~~~~~~gr~lrkav~~Wy~~~~~~~L 160 (359)
T d1yvra1 81 RAAKQEPTLFALAVCSQCSDIKTKQAAFRAVPEVCRIPTHLFTFIQFKKDLKEGMKCGMWGRALRKAVSDWYNTKDALNL 160 (359)
T ss_dssp CSSCSHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHH
T ss_conf 88784269999999986898889999999999996682189999999998536768786258999999999864998999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 A~~~~Ky~~r~gwShkDlLrl~Hpkp~~~~~~~l~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 240 (359)
T d1yvra1 161 AMAVTKYKQRNGWSHKDLLRLSHIKPANEGLTMVAKYVSKGWKEVQEAYKEKELSPETEKVLKYLEATERVKRTKDELEI 240 (359)
T ss_dssp HHHHTSCCCSSSCCHHHHHHHTTCCCSSHHHHHHHHHHHTCHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 99998517778997999999808999847899999999638511111134433660379999999999998715878889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~lI~~~~Lt~E~~p~~~~~~~~vWeaLi~~mp~~ALLRNL~~l~~~gvl~~~~~~~~~V~~rL~D~~~l~~arihP~~~ 320 (359)
T d1yvra1 241 IHLIDEYRLVREHLLTIHLKSKEIWKSLLQDMPLTALLRNLGKMTADSVLAPASSEVSSVCERLTNEKLLKKARIHPFHI 320 (359)
T ss_dssp HHHHHHHCCCGGGSCTTGGGCHHHHHHHHHTCCHHHHHHHHHHHHHTTTTCTTCHHHHHHHHHHTCHHHHHHTTCCHHHH
T ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCHHHH
T ss_conf 99999728989870144316899999998718899999978877452567877278999999847999999725582999
Q ss_pred --------------------------------------E
Q ss_conf --------------------------------------8
Q 001511 467 --------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------~ 467 (1064)
-
T Consensus 321 L~A~~~Y~~g~~~~~~~~w~p~~~i~~AL~~A~~~sf~~ 359 (359)
T d1yvra1 321 LVALETYKKGHGNRGKLRWIPDTSIVEALDNAFYKSFKL 359 (359)
T ss_dssp HHHHHHHHHCC-----CCCCCCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999999984478666677788599999999999987079
|
| >d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: 2-methylacyl-CoA racemase Mcr species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=27023.79 Aligned_cols=1 Identities=0% Similarity=-0.759 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~gPL~girVld~~~~~agp~~~~~lad~GA~VikvE~p~~~~~~~~~~~nr~K~si~lDl~~~~g~~~~~~Lv~~aDv~i 80 (359)
T d1x74a1 1 AGPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLI 80 (359)
T ss_dssp CCTTTTCEEEEECCSTHHHHHHHHHHHTTCEEEEEECC-----CCCCGGGCSCEEEECCTTSHHHHHHHHHHHTTCSEEE
T ss_pred CCCCCCCEEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCEEE
T ss_conf 98999989998278308999999999839979998999999813456651898599972859899999999986689988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~n~~pg~~~~lgl~~~~l~~~nP~lI~~sisgfG~~Gp~~~~~~~D~~~qA~sG~~~~~g~~~~~P~~~~~~~~d~~~g~ 160 (359)
T d1x74a1 81 EGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPRSQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGS 160 (359)
T ss_dssp ECSCTTHHHHHTCSHHHHHHHCTTCEEEEEESSCSSSTTTTSCCCHHHHHHHTSTGGGSSCTTSCCCCCTTCCCCCCTTH
T ss_pred ECCCCCCHHHCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEHHHHHHHH
T ss_conf 66888736541898788776347816999968988898666565654455556622212789999878732189876799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 l~aa~ailaAL~~R~~tG~Gq~VdvSl~ea~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~y~t~DG~~i~~~~~~ 240 (359)
T d1x74a1 161 MFLLVGILAALWERQSSGKGQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAIE 240 (359)
T ss_dssp HHHHHHHHHHHHHHHHHSCCEEEEEEHHHHHHHHTHHHHHHHHTTSCCSSTTCSTTTTCSTTEEEEECTTSCEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEECC
T ss_conf 99999999999999856997486311167788877799999980798865688867666765476254788368996277
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~l~~d~~~~~~~~~~~~~~el~~~l~~~~~~~t~~e~~~~l~~~gvp~~pV~~~~ev~~dpq~~~r~~~~~ 320 (359)
T d1x74a1 241 PQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTPVLAFGEVHNEPHIIERNTFYE 320 (359)
T ss_dssp HHHHHHHHHHHTCCGGGSCCTTCGGGHHHHHHHHHHHHHTSCHHHHHHHTSSSSSCEEECCCHHHHTTCHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCHHHHHHCCEEE
T ss_conf 78777654121201344321101444688899998776666489999999767970895289999874978897199998
Q ss_pred --------------------------------------E
Q ss_conf --------------------------------------8
Q 001511 467 --------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~~~~~~p~~s~tp~~~~~~P~lGeht~eIL~e~lG 359 (359)
T d1x74a1 321 ANGGWQPMPAPRFSRTASSQPRPPAATIDIEAVLTDWDG 359 (359)
T ss_dssp CSSSEEECCSSEESSSCCCCCCCCCCCCCHHHHHHHHTC
T ss_pred ECCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 689114578878899998899999999789999997279
|
| >d2hrca1 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Chelatase-like superfamily: Chelatase family: Ferrochelatase domain: Ferrochelatase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27021.76 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~K~K~aVLl~n~G~P~s~~dv~~yL~~~~~d~~vi~~P~~~~l~~~i~~~r~~~~~~~Y~~igg~SPL~~~t~~q~~~l~ 80 (359)
T d2hrca1 1 RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRLTPKIQEQYRRIGGGSPIKIWTSKQGEGMV 80 (359)
T ss_dssp CCCCEEEEEEECCCCSSGGGHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99966999974799999789999999974799721163488888887411008899999863899922999999999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~L~~~~~~~~~~~v~~amry~~P~i~~~l~~l~~~G~~~iv~lPLyPqyS~sTtgs~~~~~~k~l~~~~~~~~~~~~~i 160 (359)
T d2hrca1 81 KLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTI 160 (359)
T ss_dssp HHHHHHCGGGCSEEEEEEESSSSSBHHHHHHHHHHTTCSEEEEEESCSSCCTTTHHHHHHHHHHHHHHHTSCCSSEEEEE
T ss_pred HHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 89876347665437998514355305889999985587440010155423412003226899999998541013566434
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~p~yi~a~a~~i~~~~~~~~~~~~~~~~llfS~HglP~~~~~~gdpY~~q~~~t~~~i~~~l~~~~~~~~~fQSr 240 (359)
T d2hrca1 161 DRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSK 240 (359)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHTTSCGGGTTTCEEEEEEECCBHHHHTTTCSHHHHHHHHHHHHHHHTTTCSCEEEEEECC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHEEEECC
T ss_conf 67788188999999999999972553357772699961123131454189517889999999998734430333244447
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~g~~~Wl~P~~~~~l~~l~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~~~~G~~~~~~vp~lN~~p~fi~~la~l 320 (359)
T d2hrca1 241 VGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADL 320 (359)
T ss_dssp CSSSCBSSSBHHHHHHHHHHTTCCEEEEEECSCSSCCHHHHTTTTTHHHHHSCSSSCCSEEEECCCSTTCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 79976679858999999997499739998986566534679988899999999975996489827999998999999999
Q ss_pred --------------------------------------E
Q ss_conf --------------------------------------8
Q 001511 467 --------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------~ 467 (1064)
-
T Consensus 321 v~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 359 (359)
T d2hrca1 321 VHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQQL 359 (359)
T ss_dssp HHHHHHHTCSSCGGGGSCCTTCCCHHHHHHHHHHHTCCC
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
T ss_conf 999864788777556888999887103888850053779
|
| >d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin lyase domain: Pectin lyase species: Aspergillus niger, type B [TaxId: 5061]
Probab=100.00 E-value=0 Score=27021.31 Aligned_cols=1 Identities=100% Similarity=0.669 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 a~v~g~a~Gfa~~ttGG~~g~v~~Vtt~~eL~~al~~~~PriI~~~gtid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T d1qcxa_ 1 AGVVGAAEGFAHGVTGGGSASPVYPTTTDELVSYLGDNEPRVIILDQTFDFTGTEGTETTTGCAPWGTASQCQVAINLHS 80 (359)
T ss_dssp CCCCSCCCGGGTTCCTTTTCCCBCCCSHHHHHHHHHSSSCEEEEECSEEECTTTTCEEEEEEECTTCSSTTBCEEECGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98776676055688788897489938999999986289974999886681344556322334245554322222325332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~v~sn~TI~G~g~~~~i~g~g~~~~~~~~NVIirnl~ir~~~~~~~~~~Dai~i~~ 160 (359)
T d1qcxa_ 81 WCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDD 160 (359)
T ss_dssp HHHHHCTTSCEEEEEEEGGGTSCEECCSSEEEEECTTCCEEESCCEEEETTCCCEEEESCEEEEECTTEETSCCSEEEES
T ss_pred CCCCCCCCCCCEEEEEECCCCCEEEECCCCEEEECCCCEEEECCCEEEEECCCCEEEECEEEECCCCCCCCCCCEEEEEC
T ss_conf 22344556762035530267650784798749851588189746568886784489969098558777787897478617
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 s~nvwIDH~s~s~~~d~~~~~~~~~s~~vTvs~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~vT~hhN~~~~~~~R~P~~ 240 (359)
T d1qcxa_ 161 SDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKV 240 (359)
T ss_dssp CCCEEEESCEEEEESSCSEEECSSCCEEEEEESCEEECBCSSBTTSSSBBSCCEEECCSSEEEEEESCEEESBCSCTTEE
T ss_pred CCCEEEEEEECCCCCCCCEEEECCCCCCEEEECCEECCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 88789982564456887537602677756865307616754101256567787400279861999925615887778606
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 r~g~~~hv~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~ 320 (359)
T d1qcxa_ 241 QGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVVETPISGQLFSSPDANTNQQCASVFGRSCQLNAFGNSG 320 (359)
T ss_dssp CSSEEEEEESCEEEEEEEEEEEECTTEEEEEESCEEEEEEEEECSSCSSEEECCCSHHHHGGGHHHHSSCCCCCEEESCC
T ss_pred CCCCEEEEEEEEEECCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 07844899941796767778824775189998158889887665564320304687554531245556400011335676
Q ss_pred --------------------------------------E
Q ss_conf --------------------------------------8
Q 001511 467 --------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~t~~~a~~v~~~V~~~AG~GK 359 (359)
T d1qcxa_ 321 SMSGSDTSIISKFAGKTIAAAHPPGAIAQWTMKNAGQGK 359 (359)
T ss_dssp CCCCBCGGGGGGGTTSCCCCCCCGGGHHHHHHHHSSTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 314688530046677663576899999987775289999
|
| >d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin lyase domain: Pectin lyase species: Aspergillus niger, type A [TaxId: 5061]
Probab=100.00 E-value=0 Score=27019.36 Aligned_cols=1 Identities=0% Similarity=-0.095 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~v~~~a~Gfa~~ttGG~~g~~~~Vtt~~eL~~al~~~~PriI~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T d1idka_ 1 VGVSGSAEGFAKGVTGGGSATPVYPDTIDELVSYLGDDEARVIVLTKTFDFTDSEGTTTGTGCAPWGTASACQVAIDQDD 80 (359)
T ss_dssp CCCCSCCCGGGTTCCTTTTCCCBCCCSHHHHHHHHHSSSCEEEEECSEEECTTTTCEEEEEEECTTCSSTTBCEEECGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 97565574144578788897379938999999986289974999863480356644112333234565431101114443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~v~sn~TI~G~g~~~~i~g~g~~i~~~~~NVIiRNl~i~~~~~~~~~~~DaI~i~~ 160 (359)
T d1idka_ 81 WCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLDD 160 (359)
T ss_dssp HHHHHSCCSCEEEEEEESSTTSCEEECSSEEEEECTTTCEEESCCEEECTTCEEEEEESCEEEEECTTEETSCCSEEECS
T ss_pred CCCCCCCCCCCCEEEEECCCCCCEEECCCCEEEECCCCEEEECCCEEEEECCCEEEEECCEEECCCCCCCCCCCEEEEEC
T ss_conf 22235556763014532167770572799608861588499657468874682199979599568777787887588517
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 s~nVwIDH~s~s~~~d~~~~~~~~~s~~vTis~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vT~hhN~f~~~~~R~P~~ 240 (359)
T d1idka_ 161 CDLVWIDHVTTARIGRQHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKV 240 (359)
T ss_dssp CEEEEEESCEEEEESSCSEEECCCTTCEEEEESCEEECBCSCBTTSSSBBSCCEEECCSSCEEEEESCEEESBCSCTTEE
T ss_pred CCCEEEEEEEECCCCCCCEEEECCCCCCEEEECEEEECCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCCEE
T ss_conf 86489980060357788635610578726620406523312234566556687332289862899924981577888401
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 r~g~~~hv~NN~~~n~~~~~i~~~~~~~i~~e~N~F~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~ 320 (359)
T d1idka_ 241 QDNTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQNVDTVLETYEGEAFTVPSSTAGEVCSTYLGRDCVINGFGSSGT 320 (359)
T ss_dssp CTTCEEEEESCEEEEEEEEEEEECTTCEEEEESCEEEEEEEEEEEESSEEECCSSTTGGGGGHHHHSSCCCCCEEESSCC
T ss_pred CCCCEEEEECCEEECCCCEEEECCCCEEEEEECEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 34305999876997762557835775158996618867767754467723733567777421244476443113354664
Q ss_pred --------------------------------------E
Q ss_conf --------------------------------------8
Q 001511 467 --------------------------------------K 467 (1064)
Q Consensus 467 --------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~a~~v~~~V~~nAG~Gkl 359 (359)
T d1idka_ 321 FSEDSTSFLSDFEGKNIASASAYTSVASRVVANAGQGNL 359 (359)
T ss_dssp CCCBCCTTGGGGTTSCCCCCCCGGGHHHHHHHHCSTTCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 366776521355665545768878977766434898879
|
| >d2hdsa1 e.3.1.1 (A:4-361) AMPC beta-Lactamase, class C {Escherichia coli, cephalosporinase [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: AMPC beta-Lactamase, class C species: Escherichia coli, cephalosporinase [TaxId: 562]
Probab=100.00 E-value=0 Score=26946.29 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~p~~~~~~v~~~i~~~~~~~~ipG~~v~v~~~g~~~~~~~G~~~~~~~~~~~~dt~f~iaS~tK~~ta~~i~~lv~~G~l 80 (358)
T d2hdsa1 1 APQQINDIVHRTITPLIEQQKIPGMAVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEI 80 (358)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf 96789999999999999838998699999999999999688602566988999997863045999999999999755986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~ld~~v~~ylp~~~~~~~~~iTir~LLshtsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~Ysn~~~~llg~iie 160 (358)
T d2hdsa1 81 KLSDPTTKYWPELTAKQWNGITLLHLATYTAGGLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAV 160 (358)
T ss_dssp CTTSBHHHHCTTCCCGGGTTCBHHHHHHTCSSCCCSSCCTTCCSHHHHHHHHHHCCCSSCTTSEECCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHH
T ss_conf 42300010000002321101455665026768980430121222089999876175335898426743541110013231
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~tg~~~~~~~~~~i~~PLgm~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aggl~st~~Dla~f~~~~l~~~~~ 240 (358)
T d2hdsa1 161 KPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWGYREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLKPLDI 240 (358)
T ss_dssp GGGTSCHHHHHHHHTTTTTTCTTEESSCCGGGGGGBCCEEETTEEECCCCCTTHHHHTCCEECHHHHHHHHHHHHCGGGC
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHCCCCC
T ss_conf 13699821202667775059642527898467315102433686412344545578764623899999999998589987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~G~~~G~~ 320 (358)
T d2hdsa1 241 NEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGFG 320 (358)
T ss_dssp SSHHHHHHHHHHTSEEEEETTEEECSSCEEEESSCCTHHHHTSTTSSSSCCCEECEEEEEEECCCSSEEEEEEEEETTEE
T ss_pred CHHHHHHHHHHHHCEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHH
T ss_conf 86888888877632302368766555402035667753234676655211234444556777777850797345267425
Q ss_pred -------------------------------------E
Q ss_conf -------------------------------------8
Q 001511 467 -------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------~ 467 (1064)
+
T Consensus 321 s~~~~~Pe~~~~ivvltN~~~~~~~~~~~~~~il~al~ 358 (358)
T d2hdsa1 321 SYVAFIPEKELGIVMLANKNYPNPARVDAAWQILNALQ 358 (358)
T ss_dssp EEEEEEGGGTEEEEEEESBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999987997999997799998789999999999759
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=26945.77 Aligned_cols=1 Identities=0% Similarity=-1.490 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 dRv~P~C~~f~~CGGC~~qh~~y~~Ql~~K~~~l~~~~~~~~~~v~~~~p~~YR~r~~~~v~~~~~~~~~~~Gf~~~~s~ 80 (358)
T d1uwva2 1 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSS 80 (358)
T ss_dssp TBCCCSCTTTTTBTTCSCTTBCHHHHHHHHHHHHHHHHTSCCCEEECCCSSSCBSEEEEEEEEETTTTEEEEEEEBTTSS
T ss_pred CCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCC
T ss_conf 98898999999485861008999999999999999862765676657888777415999845765889569989735884
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~iV~i~~C~i~~~~i~~~l~~lr~~l~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (358)
T d1uwva2 81 DIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP 160 (358)
T ss_dssp CEEECSCCTTBCHHHHHHHHHHHHHHTTCGGGGGEEEEEEEEETTEEEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEES
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 06614125145577999999988754033445520399999831880899995266677789999975311363899940
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~g~~~~~~~~g~~~~i~p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gv 240 (358)
T d1uwva2 161 DSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGV 240 (358)
T ss_dssp SSSCCEEEECCCCEEEETTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEE
T ss_pred CCEEEEEECCCCEEEECCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHCCCCCCEEEEC
T ss_conf 43367762487248960888999877133003303446779889875246788449995366665521003565279822
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 E~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~l~~~~~~~ivYVSCnp~Tl 320 (358)
T d1uwva2 241 EGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATL 320 (358)
T ss_dssp ESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCHHHHHHHHHHCCSEEEEEESCHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf 47499999999848755324621342204543234455404675599679973479999999974999899992898998
Q ss_pred -------------------------------------E
Q ss_conf -------------------------------------8
Q 001511 467 -------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------~ 467 (1064)
-
T Consensus 321 aRDl~~l~~~gy~l~~i~~~D~FP~T~HvE~v~~l~Rv 358 (358)
T d1uwva2 321 ARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 358 (358)
T ss_dssp HHHHHHHHHTTCEEEEEEEECCSTTSSCCEEEEEEEC-
T ss_pred HHHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEEEEEC
T ss_conf 87799998779767599997359998618999999969
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=100.00 E-value=0 Score=26943.69 Aligned_cols=1 Identities=0% Similarity=0.138 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~dpr~dP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~ 80 (358)
T d1jkma_ 1 PGRLGDESSGPRTDPRFSPAMVEALATFGLDAVAAAPPVSASDDLPTVLAAVGASHDGFQAVYDSIALDLPTDRDDVETS 80 (358)
T ss_dssp CHHHHCTTCCTTTCTTSCHHHHHHHHTTTTTSCCCCCSSCTTSCHHHHHHHHHHHHHHHHHHHHHSCCCCTTCCCCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 99888987786779998999999997536665677998783315599999987647999988755454269988885079
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~i~~~dg~~i~~~iy~P~~~~~~~Pviv~~HGGG~~~gs~~~~~~~~~~~~la~~g~~VvsvdYRla~~~~pe~~~p~ 160 (358)
T d1jkma_ 81 TETILGVDGNEITLHVFRPAGVEGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWTAEGHHPFPS 160 (358)
T ss_dssp EEEEECTTSCEEEEEEEEETTCCSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEETTEECCTTH
T ss_pred EEEEECCCCCEEEEEEEECCCCCCCCCEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCH
T ss_conf 99996789988899999417888898749996387104066542221067888875100133000001246565677733
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 240 (358)
T d1jkma_ 161 GVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGGYAWDHERRLTELPSL 240 (358)
T ss_dssp HHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCCCCTTSCHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCHHHCCCCCCH
T ss_conf 56777888889987232468754034444672679999999976527876542223455211366576411110234210
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~~D~l~~e~~~~~~~L~~aGv~v~~~~ 320 (358)
T d1jkma_ 241 VENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELDPLRDEGIAFARRLARAGVDVAARV 320 (358)
T ss_dssp HHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCCCEEEEEETTCTTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 00234445516666677642775577457300234530110258999899987887787999999999998799589999
Q ss_pred -------------------------------------E
Q ss_conf -------------------------------------8
Q 001511 467 -------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------~ 467 (1064)
.
T Consensus 321 ~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~~~~~ 358 (358)
T d1jkma_ 321 NIGLVHGADVIFRHWLPAALESTVRDVAGFAADRARLR 358 (358)
T ss_dssp ETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ECCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 79896463542466697899999999999999897569
|
| >d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endocellulase E1 species: Acidothermus cellulolyticus [TaxId: 28049]
Probab=100.00 E-value=0 Score=26943.02 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~g~l~~~G~~~~d~~G~~~~l~GvN~~g~~~~~~~~~~~~~~~~~~~~~~i~~~G~N~VRlpv~~~~~~~~~~~~~~~ 80 (358)
T d1ecea_ 1 AGGGYWHTSGREILDANNVPVRIAGINWFGFETCNYVVHGLWSRDYRSMLDQIKSLGYNTIRLPYSDDILKPGTMPNSIN 80 (358)
T ss_dssp CCCSCCEEETTEEECTTSCEECCEEEECCCBTTTTCSCTTTTTSCHHHHHHHHHHTTCCEEEEEEEGGGGSTTCCCCSCC
T ss_pred CCCCEEEEECCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCHHHCCCCCCCCCCC
T ss_conf 99970996099799999989999987667411345666667724799999999976998899347688746877777755
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~ld~~v~~a~~~Gl~Vildlh~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~el~ 160 (358)
T d1ecea_ 81 FYQMNQDLQGLTSLQVMDKIVAYAGQIGLRIILDRHRPDCSGQSALWYTSSVSEATWISDLQALAQRYKGNPTVVGFDLH 160 (358)
T ss_dssp CSSSCTTTTTCCHHHHHHHHHHHHHHTTCEEEEEEEESBTTBCCSSSCCSSSCHHHHHHHHHHHHHHTTTCTTEEEEECS
T ss_pred CCCCCHHHHCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 33368111011699999999999997899066401356666888655688277999999999998864476536755320
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 NEP~~~~~~~~~~~~~~~~~~~~~~~~~Ir~~d~~~~v~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~H~Y 240 (358)
T d1ecea_ 161 NEPHDPACWGCGDPSIDWRLAAERAGNAVLSVNPNLLIFVEGVQSYNGDSYWWGGNLQGAGQYPVVLNVPNRLVYSAHDY 240 (358)
T ss_dssp SCCCTTCBSSCCCTTTBHHHHHHHHHHHHHHHCTTSEEEEECBSEETTEECSTTTBCTTTTTSCCCCSSSSCEEEEEECC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEEEEC
T ss_conf 33456776775413455899999999999850899589996546676665322566430432776678667658986414
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~igEfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~W~ 320 (358)
T d1ecea_ 241 ATSVYPQTWFSDPTFPNNMPGIWNKNWGYLFNQNIAPVWLGEFGTTLQSTTDQTWLKTLVQYLRPTAQYGADSFQWTFWS 320 (358)
T ss_dssp CTTTCCCGGGSCTTTTTTHHHHHHHHTHHHHHTTSSCEEEEECCCCCCSHHHHHHHHHHHHHTCCHHHHTTSSCEEEESC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 78767753456630356677788889999998459709992678888999869999999999999998540181699973
Q ss_pred -------------------------------------E
Q ss_conf -------------------------------------8
Q 001511 467 -------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------~ 467 (1064)
-
T Consensus 321 ~k~~~~~~~G~~~~dw~~~~~~~~~~i~~~~~~~~~~~ 358 (358)
T d1ecea_ 321 WNPDSGDTGGILKDDWQTVDTVKDGYLAPIKSSIFDPV 358 (358)
T ss_dssp SCSCCTTTCCSBCTTSSSBCHHHHHHHGGGCCCCCCCC
T ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHCCCCCCCCCCCC
T ss_conf 77777887640169888878366532030213568989
|
| >d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=26942.72 Aligned_cols=1 Identities=0% Similarity=-1.390 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~v~t~~nlk~~L~~A~~~~yAV~AfNv~n~e~~~Aii~AAee~~sPvIlq~s~g~~~y~gg~~~~~~~~~~ 80 (358)
T d1dosa_ 1 SKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQG 80 (358)
T ss_dssp CCGGGTCCSEECCTHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHHTCCEEEEECHHHHHHHHCTTSCCCSTTH
T ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCHHHHHHHH
T ss_conf 94663346776757999999999998795699878698999999999999968998999061688770764156668767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~a~~v~~~a~~~~VPV~lHLDHg~~~~~~~i~~~idag~~~~~~~~~~gfsSVMiDgS~l~~eeNi~~Tk~v 160 (358)
T d1dosa_ 81 AAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKY 160 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCSCSEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 88888898999999999837997899657652146778887788899999982777776556778857789999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ve~Ah~~gv~VEaElG~igg~Edg~~~~~~~~~~~~T~peea~~~~~ef~~~tgvD~LAvaiGt~HG~Yk~~~~~l~p~l 240 (358)
T d1dosa_ 161 LERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKAGNVVLTPTI 240 (358)
T ss_dssp HHHHHHTTCEEEEECCCCCCCCCCCSCCCCCCCCCSCCHHHHHHHHHHHHTTCSCEEEECCSSCCCSSCCCSCCCCCTHH
T ss_pred HHHHHHHCCEEEEEEEEEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCCCCCCHH
T ss_conf 99985537768984336404567753210102330599899999999876467651565432614553478876677014
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~i~~~~~vp~~~~~LVlHGgSGip~e~i~~ai~~GV~KiNi~Tdlr~a~~~~ir~~~~~n~~~~~~~~~~~~~~ 320 (358)
T d1dosa_ 241 LRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGE 320 (358)
T ss_dssp HHHHHHHHHHHHTCCTTCSCEEECSCTTCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHHGGGSSSSEEETTEE
T ss_pred HHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCC
T ss_conf 69999999987289986534120588897688999999819848961719999999999999984846541113675444
Q ss_pred -------------------------------------E
Q ss_conf -------------------------------------8
Q 001511 467 -------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~k~~fDPrk~l~~a~~am~~~v~~~~~~fgs~nkl 358 (358)
T d1dosa_ 321 DQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAIDVL 358 (358)
T ss_dssp EEECHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 57777767908889999999999999999982897779
|
| >d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: D-aminoacylase, catalytic domain domain: N-acyl-D-aminoacid amidohydrolase, catalytic domain species: Alcaligenes faecalis [TaxId: 511]
Probab=100.00 E-value=0 Score=26944.06 Aligned_cols=1 Identities=0% Similarity=-1.822 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 GFID~HtH~D~~~~~~p~~~~~~~~GVTT~v~GncG~s~aP~~~~~~~~~~~~l~~g~~~~w~t~~eyl~~le~~~~~~N 80 (358)
T d1m7ja3 1 GFIDSHTHDDNYLLKHRDMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRAAPPAVN 80 (358)
T ss_dssp CEEESSCCCTTHHHHCTTCHHHHTTTEEEEEESCTTCCSCSEECSSCCTTGGGGCSSSCCEESSHHHHHHHHHHSCCSSE
T ss_pred CCEECCCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 92522788845532597986414699764888177777145775442005778504777686789999999973587654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 va~~vgH~~lR~~vmg~~~~~at~~ei~~M~~ll~eal~~GA~G~Stgl~y~P~~~A~~~El~~lak~~~~~g~~~~~h~ 160 (358)
T d1m7ja3 81 AACMVGHSTLRAAVMPDLRREATADEIQAMQALADDALASGAIGISTGAFYPPAAHASTEEIIEVCRPLITHGGVYATHM 160 (358)
T ss_dssp EEEEEEHHHHHHHHCSCCSSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSGGGTTCCHHHHHHHHTHHHHHTCEEEEEC
T ss_pred EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 03541455554415583023578899999999999999658765235775441035898999999988886098346653
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 r~~~~~~~~~~~e~~~~a~~~g~~~~ish~~~~~~~~~~~~~~~~~~~~~a~~G~~i~~d~yPy~ag~t~l~~~~~~~~~ 240 (358)
T d1m7ja3 161 RDEGEHIVQALEETFRIGRELDVPVVISHHKVMGKLNFGRSKETLALIEAAMASQDVSLDAYPYVAGSTMLKQDRVLLAG 240 (358)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHTSCEEECSCCCCSGGGTTTHHHHHHHHHHHHHHSCEEEEECSCSCEEEECCCCTTTTSS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHCC
T ss_conf 25663178888999999997298657513345777652568999999999863798641215854134522234444133
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~G~~l~eiA~~~g~~p~d~~~dl~~~~~~~~~~~e~~v~~~l~~p~~~igSDgga~~~~~hpr~~gt 320 (358)
T d1m7ja3 241 RTLITWCKPYPELSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAFGPTMIGSDGLPHDERPHPRLWGT 320 (358)
T ss_dssp CEEEEEESSCGGGTTCBHHHHHHHTTSCHHHHHHHHCSEEEEECCCCHHHHHHHHHSTTEEECCCCCTTCSSCCTHHHHH
T ss_pred CHHHHCCCCCHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 30110266676542574999998839987887888742210010589999999983999228767665789958888661
Q ss_pred -------------------------------------E
Q ss_conf -------------------------------------8
Q 001511 467 -------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------~ 467 (1064)
-
T Consensus 321 f~r~L~~~vRe~~~lsLeeAI~k~T~~pA~~~Gl~dRG 358 (358)
T d1m7ja3 321 FPRVLGHYSRDLGLFPLETAVWKMTGLTAAKFGLAERG 358 (358)
T ss_dssp HHHHHCCCCCCTCSSCHHHHHHTTTHHHHHHHTCTTCS
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999999567881789999999987999983987899
|
| >d1edqa2 c.1.8.5 (A:133-443,A:517-563) Chitinase A, catalytic domain {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Chitinase A, catalytic domain species: Serratia marcescens [TaxId: 615]
Probab=100.00 E-value=0 Score=26941.71 Aligned_cols=1 Identities=0% Similarity=0.071 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~Yy~~W~~y~~~~~~~~I~~~~~THi~YAFa~v~~~~~~~~~~~~~~~~~~ 80 (358)
T d1edqa2 1 TDGSHLAPLKEPLLEKNKPYKQNSGKVVGSYFVEWGVYGRNFTVDKIPAQNLTHLLYGFIPICGGNGINDSLKEIEGSFQ 80 (358)
T ss_dssp TTCTTSCCCCCCCCTTCCCBCCCSSCEEEEEEEGGGGSTTCCCGGGSCGGGCSEEEEEEECBCCCTTTSGGGGGSTTHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHCCHHHCCEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99754688779778889888789998999995952023899992469986797699950772698874654222333222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~LK~~~p~lKvllSiGGw~~s~~~~~~a~~~~R~~ 160 (358)
T d1edqa2 81 ALQRSCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKVKRDR 160 (358)
T ss_dssp HHHHHTTTCCTTSBCCSCHHHHHTSCBTTBCSTTCSSCHHHHHHHHHHHHCTTCEEEEEEECSSSCGGGGGTTSHHHHHH
T ss_pred CCCCCCCCCCCCCEEECCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf 22224466777615612714432033467664344344289999999974899769999989987888602358789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 Fi~svv~~l~~y~~fDGIDIDWEyP~~~g~~~~~~~~~D~~nf~~Ll~eLR~~l~~~~~~~~~~~~ls~a~~~~~~~~~~ 240 (358)
T d1edqa2 161 FVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDK 240 (358)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECSCTTSCSSCTTCCCTTHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECSHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHH
T ss_conf 99999999998353786131124323345778778978998999999999999887643317742025650476445413
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~l~~~vD~inlMtYD~~G~w~~~~~g~~t~l~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~YGRs~~~K~ 320 (358)
T d1edqa2 241 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTAMDARSVQAKG 320 (358)
T ss_dssp SCHHHHGGGCSEEEEECCCSSCTTCSSSCCCSSCSSCCTTCTTCSCCHHHHHHHHHHHTCCGGGEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHH
T ss_conf 21777863378898860245577787887877888887667877652999999999878998896999685479999887
Q ss_pred -------------------------------------E
Q ss_conf -------------------------------------8
Q 001511 467 -------------------------------------K 467 (1064)
Q Consensus 467 -------------------------------------~ 467 (1064)
+
T Consensus 321 ~y~~~~~lgG~~~W~~~~D~g~ll~a~~~~l~~~~~~~ 358 (358)
T d1edqa2 321 KYVLDKQLGGLFSWEIDADNGDILNSMNASLGNSAGVQ 358 (358)
T ss_dssp HHHHHHTCCEEEEECGGGCCSHHHHHHHHHTTCCBSCC
T ss_pred HHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 78862897439887156786289999998647854679
|
| >d2qapa1 c.1.10.1 (A:1-357) Fructose-1,6-bisphosphate aldolase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=100.00 E-value=0 Score=26874.72 Aligned_cols=1 Identities=0% Similarity=1.101 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~el~~~a~~~~~~GKGilAADeS~gT~~Krl~~iGventEenr~~~R~~l~tsp~~~~ 80 (357)
T d2qapa1 1 MSRVTVLQSQLPAYNRLKTPYESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQ 80 (357)
T ss_dssp CCEEEEEGGGSGGGCSCCCTTHHHHHHHHHHHTCTTCEEEEECCCTTTHHHHHGGGTCCCCHHHHHHHHHHHHTCTTGGG
T ss_pred CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf 96121111037775445847899999999998079986998358998277789876999978999999998847987555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~IsGvILfeeTm~q~~~~g~~~~~ll~~kGIVPgIKVDkGl~~~~~G~~~ek~t~gLD~L~~R~~ey~~~Ga~faKwRsV 160 (357)
T d2qapa1 81 YISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGYVKRASAYYKKGCRFCKWRNV 160 (357)
T ss_dssp TEEEEEECHHHHTCBCTTSSBHHHHHHHTTCEEEEECCCCEEECSSSSTTCEEECCCTTHHHHHHHHHHTTCCEEEEEEE
T ss_pred CEEEEEECHHHHHHHCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEECCCCHHC
T ss_conf 44689812898732302799779999847981544247751478789974642625677999877754233300310100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 i~i~~~~ps~~~I~~na~~laryA~i~q~~GLVPIVEPEVlidg~h~~e~~~~vte~vl~~~~~~l~~~~V~Leg~lLKp 240 (357)
T d2qapa1 161 YKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEVMIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKP 240 (357)
T ss_dssp ECCBTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 43666775044466568999999999997497631051233224564688899999999999998875314445776543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 nMv~~G~~~~~~~~~e~va~~tv~~l~~tvP~~VpgIvfLSGGqS~eeAt~~LnaiN~~~~~~pw~lsfSfsRALQ~s~L 320 (357)
T d2qapa1 241 NMVVPGAESGKTAAPEQVAHYTVMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARALQSSAL 320 (357)
T ss_dssp CCCCCCTTSSCCCCHHHHHHHHHHHHHHHSBTTCCEEEECCTTCCHHHHHHHHHHHTTCCSCCCSEEEEEESHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHH
T ss_conf 42224543345688556302356665214797787113147886789999999997424578998589863397608999
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------8
Q 001511 467 ------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------~ 467 (1064)
+
T Consensus 321 k~W~g~~env~~aQ~~~~~Ra~~ns~A~~G~y~~~~e 357 (357)
T d2qapa1 321 KAWGGKESGLAAGRRAFLHRARMNSMAQLGKYKRSDD 357 (357)
T ss_dssp HHHTTSGGGHHHHHHHHHHHHHHHHHHHTTCCCGGGC
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9857974639999999999999868986688687789
|
| >d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide phosphodiesterase 1b, PDE1B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: PDEase domain: Catalytic domain of cyclic nucleotide phosphodiesterase 1b, PDE1B species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=26873.62 Aligned_cols=1 Identities=0% Similarity=0.636 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~w~Fd~f~l~~~~~~~~L~~~~~~if~~~~l~~~f~i~~~~l~~Fl~~v~~~Y~~~~nPYHN~ 80 (357)
T d1taza_ 1 VGPTYSTAVLNCLKNLDLWCFDVFSLNQAADDHALRTIVFELLTRHNLISRFKIPTVFLMSFLDALETGYGKYKNPYHNQ 80 (357)
T ss_dssp CCCCCCHHHHHHHTTTTSTTCCHHHHHHHTTSCHHHHHHHHHHHHTTHHHHTTCCHHHHHHHHHHHHHHHTTTCCSSSSH
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCHHCCHHCCCCHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 99889899999986455699980130101389829999999999878376439899999999999998457789875359
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~HA~dV~q~~~~lL~~~~~~~~l~~~E~~alliAal~HD~~HpG~~N~flv~s~~~LA~lYnd~SvLEnhH~~~~~~lL~ 160 (357)
T d1taza_ 81 IHAADVTQTVHCFLLRTGMVHCLSEIELLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVYNDRSVLENHHISSVFRLMQ 160 (357)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHHTCHHHHHHTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 99999999999999635632338999999999999988248899635799863887888639987789999999999980
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~i~~~l~~~~~~~~r~~ii~~ILaTDm~~H~~~l~~~~~~~~~~~~~~r~~~~~~lik~ADis~~~rp~~~~~~W~ 240 (357)
T d1taza_ 161 DDEMNIFINLTKDEFVELRALVIEMVLATDMSCHFQQVKTMKTALQQLERIDKPKALSLLLHAADISHPTKQWLVHSRWT 240 (357)
T ss_dssp SGGGCTTTTSCHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTCGGGSCHHHHHHHH
T ss_pred CCCHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 61000103899899999999999998222267689999999999974114109999999998623554236779999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~l~~Ef~~Qgd~E~~~gl~~sp~~dr~~~~~~~~QigFi~~iv~Plf~~l~~~~p~~~~p~~~~~~~n~~~~~~~~~~~ 320 (357)
T d1taza_ 241 KALMEEFFRQGDKEAELGLPFSPLCDRTSTLVAQSQIGFIDFIVEPTFSVLTDVAEKSVQPLADEDSKSKNQPSFQWRQP 320 (357)
T ss_dssp HHHHHHHHHHHHHHHHHTCC------CCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998899845999987668754320788999999999999999998770653688899999999899987641
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------8
Q 001511 467 ------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~en~~~~~~~~a~ 357 (357)
T d1taza_ 321 SLDVEVGDPNPDVVSFRSTWVKRIQENKQKWKERAAS 357 (357)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 2234557876234321314556545438999987439
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=0 Score=26871.56 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~f~~~~f~l~~G~~l~~~~laY~t~G~ln~~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyf 80 (357)
T d2b61a1 1 SVQNVVLFDTQPLTLMLGGKLSYINVAYQTYGTLNDEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYF 80 (357)
T ss_dssp CCEEEEESSSSCEECTTSCEECSEEEEEEEESCCCTTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCE
T ss_pred CCCEEEEEECCCEECCCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEE
T ss_conf 97428998479825689986589569999623337889988998488776653335678887588712799766777518
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 VI~~n~lG~~~gSs~p~s~~p~tg~~~g~~FP~iti~D~v~aq~~Ll~~LGI~~l~~viG~SmGGmqAl~wa~~~Pd~v~ 160 (357)
T d2b61a1 81 FISSNVLGGCKGTTGPSSINPQTGKPYGSQFPNIVVQDIVKVQKALLEHLGISHLKAIIGGSFGGMQANQWAIDYPDFMD 160 (357)
T ss_dssp EEEECCTTCSSSSSCTTSBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHHTTCCCEEEEEEETHHHHHHHHHHHHSTTSEE
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 99855667766667767889888997776422110689999999999871866488884040788899999874267774
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~i~i~~~a~~s~~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~~p~~GL~~Ar~~a~~ty~s~~~~~~~f~r~~~~~~~~~~ 240 (357)
T d2b61a1 161 NIVNLCSSIYFSAEAIGFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWG 240 (357)
T ss_dssp EEEEESCCSSCCHHHHHHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTS
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCC
T ss_conf 33244456433235788878899999828777788755688830689999999886404789999874522234433236
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~vesyL~~~g~kf~~rfDan~yl~l~~a~~~~D~~~~~~~l~~aL~~I~a~vLvi~~~sD~lFpp~~~~~~a~~l~~ 320 (357)
T d2b61a1 241 DYFQVESYLSYQGKKFLERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQ 320 (357)
T ss_dssp CCBHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 53569999999889887607999999999986632654333338999862699889998477506598999999999986
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------8
Q 001511 467 ------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~v~~~~I~S~~GHdafL~e~~~~~~~I~~fL~~~ 357 (357)
T d2b61a1 321 SGVDLHFYEFPSDYGHDAFLVDYDQFEKRIRDGLAGN 357 (357)
T ss_dssp TTCEEEEEEECCTTGGGHHHHCHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 6998699997999875554769899999999997359
|
| >d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: 3-isopropylmalate dehydrogenase, IPMDH species: Thiobacillus ferrooxidans [TaxId: 920]
Probab=100.00 E-value=0 Score=26869.64 Aligned_cols=1 Identities=100% Similarity=1.998 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 M~kI~vipGDGIGpEV~~~~~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~dail~Gai~~p~~~~ 80 (357)
T d1a05a_ 1 MKKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDA 80 (357)
T ss_dssp CCEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTT
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCEEHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 97899977678669999999999999987708985999997552425441994899999999973065406656887567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~lR~~ldlyanvRP~k~~pg~~~~~pl~~~~~~~vD~vivREnteg~Y~g~~~~~~~~~~~~~a~~~~ 160 (357)
T d1a05a_ 81 YPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTM 160 (357)
T ss_dssp SCGGGSHHHHHHHHHHHHTCCEEEEEEECCTTSGGGCSBCHHHHTTCEEEEEEECSSSTTTCSSCEEEEETTEEEEEEEE
T ss_pred CCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEECCCCCEEEEEEE
T ss_conf 78555666477889975695588777640367666789886667761399987455643357753221267764899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~t~~~~~ri~~~Af~~a~~r~k~vt~v~K~ni~~~~~lf~~~~~eva~~yp~i~~~~~~vD~~~~~lv~~P~~fdViv~ 240 (357)
T d1a05a_ 161 VYDEDEIRRIAHVAFRAAQGRRKQLCSVDKANVLETTRLWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLT 240 (357)
T ss_dssp EEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCEEEC
T ss_conf 96289999999999988645786488885366411368999999999865898278751799999998745456567851
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~Nl~GDIlSDl~a~l~GglGl~ps~nig~~~a~fE~~HGsapdiaGk~~aNP~a~ils~ammL~~~lg~~~~A~~i~~Av 320 (357)
T d1a05a_ 241 GNMFGDILSDEASQLTGSIGMLPSASLGEGRAMYEPIHGSAPDIAGQDKANPLATILSVAMMLRHSLNAEPWAQRVEAAV 320 (357)
T ss_dssp CHHHHHHHHHHHHHTTSCGGGCEEEEECSSCEEEEESSCCCGGGTTTTCSCCHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 17888878899988735765410300068730102456878000589865949999999999972089879999999999
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------8
Q 001511 467 ------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~i~~g~~T~Dlgg~~t~~~~T~e~~daV~~~l~~~ 357 (357)
T d1a05a_ 321 QRVLDQGLRTADIAAPGTPVIGTKAMGAAVVNALNLK 357 (357)
T ss_dssp HHHHHTTCCCGGGCCTTSCCCCHHHHHHHHHHTTTCC
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 9999769967566999998768999999999987469
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=100.00 E-value=0 Score=26866.75 Aligned_cols=1 Identities=0% Similarity=-0.593 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~p~~~~~~y~~~~G~tG~Gv~VaViDtGvd~~H~dl~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 80 (357)
T d1t1ga_ 1 AAPTAYTPLDVAQAYQFPEGLDGQGQCIAIIALGGGYDETSLAQYFASLGVSAPQVVSVSVDGATNQPTGDPNGPDGEVE 80 (357)
T ss_dssp CCCEEECHHHHHHHTTCCTTCCCTTCEEEEEESSCCCCHHHHHHHHHHTTCCCCCEEEEESTTCCCCCCSCTTSTHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 99874789999998787889898897899997688778688987775058878998633799999887876556443005
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~d~~~~~GvAp~A~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~ 160 (357)
T d1t1ga_ 81 LDIEVAGALAPGAKIAVYFAPNTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLA 160 (357)
T ss_dssp HHHHHHHHHSTTSEEEEEECCSSHHHHHHHHHHHHHCTTTCCSEEEECCCEEGGGSCHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 77643125414676998741247884589999998741149808965666576766543489998766532157867999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~p~~~~~~~~~~~~ 240 (357)
T d1t1ga_ 161 AAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASAGRIERETVWNDGPDGGSTGGGVSRIFPLPSWQERANVPPSA 240 (357)
T ss_dssp ECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECSSCEEEEEECBCHHHHCBCCCEECSSSCCCGGGTTSCCCCCS
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 84168743211344544201135776236654023678775445201266666433447744121367523354234556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~pd~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g 320 (357)
T d1t1ga_ 241 NPGAGSGRGVPDVAGNADPATGYEVVIDGETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEG 320 (357)
T ss_dssp STTCCCCCEECSEEEECCTTEEEEEEETTEEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSC
T ss_pred CCCCCCCCEECCEECCCCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEECCCCC
T ss_conf 67777773313321135787742774699666168831687999999999976405886765999986260133124326
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------8
Q 001511 467 ------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------~ 467 (1064)
=
T Consensus 321 ~~~~~~~~~~~~a~~G~d~~tG~G~~n~~~~~~~l~p 357 (357)
T d1t1ga_ 321 NNDIANRARIYQAGPGWDPCTGLGSPIGIRLLQALLP 357 (357)
T ss_dssp BCCCSSSSCCSBCCSSSBTTTBTCEECHHHHHHHHCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 7788888776567668988846741549999874088
|
| >d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: CCP-like domain: Fungal peroxidase (ligninase) species: Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=100.00 E-value=0 Score=26865.98 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 a~c~~g~~~~na~cc~~~~v~~dlq~~~~~~~c~~~A~~~lRL~FHDcfv~~~~~g~~~~gGcDgSill~~~~E~~~~~N 80 (357)
T d1yyda1 1 AVCPDGTRVSHAACCAFIPLAQDLQETIFQNECGEDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSAN 80 (357)
T ss_dssp CBCTTSCBCSCGGGTTHHHHHHHHHHHTTTTSSSHHHHHHHHHHHHHHHCCCTTTCGGGCCSSSCHHHHSTTTGGGSGGG
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 92899753677435467999999999985587507899999999824105103567678999781302178644678665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~Gld~i~~~~~~~~~~~~~VScADiialAardAV~~~~GGP~~~v~~GR~Da~~a~~~~~LP~p~~~~~~l~~~Fa~~~G 160 (357)
T d1yyda1 81 NGIDDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGLIPEPQDSVTKILQRFEDAGG 160 (357)
T ss_dssp TTTHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHTSTTCCCCCCEECCCSCCCCCCTTCSCCTTCCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 88799999999999637998999999999999997306897204248888642234446789864569999999766512
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 lt~~dmVaLsGAHTIG~ah~~~~~~~~~~~~~tp~~fDn~~f~~ll~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~L~ 240 (357)
T d1yyda1 161 FTPFEVVSLLASHSVARADKVDQTIDAAPFDSTPFTFDTQVFLEVLLKGVGFPGSANNTGEVASPLPLGSGSDTGEMRLQ 240 (357)
T ss_dssp CCHHHHHHHGGGGGGCEESSSSTTCSCEESSSCTTSCSSHHHHHHTBCCCBCSSCSCCTTEECBSCCCCBTTBCCCCEEH
T ss_pred CCHHHHHEEECCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 88377611323331000245677754333466656301799999986368988888887601377744440102466248
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 SD~~L~~D~~T~~~V~~yA~n~~~F~~~Fa~AmvKms~lG~~~~~l~dcs~v~p~~~~~~~~~~~~p~~~~~~d~~~~~~ 320 (357)
T d1yyda1 241 SDFALAHDPRTACIWQGFVNEQAFMAASFRAAMSKLAVLGHNRNSLIDCSDVVPVPKPATGQPAMFPASTGPQDLELSCP 320 (357)
T ss_dssp HHHHHHHSTTTHHHHHHTTTCHHHHHHHHHHHHHHHTTTTSCGGGSEECGGGSCCCCCCCCCCCCBCTTCCGGGBCCCCT
T ss_pred HHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 99988419889999999965999999999999999997699953144577657899887788876789998676553055
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------8
Q 001511 467 ------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (357)
T d1yyda1 321 SERFPTLTTQPGASQSLIAHCPDGSMSCPGVQFNGPA 357 (357)
T ss_dssp TSCCCCCCBCSCSSCCCCCSSTTSCSCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8999887789985334457899877689756678999
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Probab=100.00 E-value=0 Score=26865.97 Aligned_cols=1 Identities=0% Similarity=-1.888 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~g~~~~~~~f~w~~~~~~~~~~~~~i~~kl~yl~~lGv~aIwl~P~~~~~~~~~~~~~~~~~hgY~~ 80 (357)
T d1gcya2 1 DQAGKSPNAVRYHGGDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFW 80 (357)
T ss_dssp CCCCCCTTCCCCGGGCCCEEECCCTTHHHHSTTTHHHHHHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTC
T ss_pred CCCCCCCCCEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCCCCCCCCH
T ss_conf 95556898605358987788624468788777747999999789999739999996947547866777777888788470
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~dy~vd~~~Gt~~df~~LV~~aH~~GI~VIlD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (357)
T d1gcya2 81 HDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPNDCDDGDRFIGGD 160 (357)
T ss_dssp SSSCSCSSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCSSCSCCCCSSSSCBGGGSCCCSSSCBTTBSSCCSTTST
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 30656866799999999999999638737898700354788875100465688765456677778888878555445665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~dln~~np~v~~~~~~~~~~~~~~~giDGfR~Daa~~i~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~ 240 (357)
T d1gcya2 161 ADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQQ 240 (357)
T ss_dssp TBBCTTSHHHHHHHHHHHHHHHHHSCEEEEEESCGGGSCHHHHHHHHHHHCTTSEEEECCCCCGGGSCTTSGGGGSCHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCCHHHH
T ss_conf 54477987999999999998777528987999515308999999998501788234543225763011011210110456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fl~NHD~~r~~~~~~~~~~~~~~~~~~~la~a 320 (357)
T d1gcya2 241 IIKDWSDRAKCPVFDFALKERMQNGSIADWKHGLNGNPDPRWREVAVTFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYA 320 (357)
T ss_dssp HHHHHHHHHTSCEECHHHHHHHHHSCGGGGGGSGGGCSSHHHHTTEEECSCCTTTSBCSSGGGBCCSSCCCGGGHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 66767640344310035554300456999999985076656645257740477755424457864334287999999999
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------8
Q 001511 467 ------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------~ 467 (1064)
-
T Consensus 321 lllt~pGiP~IyyGde~d~g~~d~i~~li~iRk~~~i 357 (357)
T d1gcya2 321 YILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRAAGV 357 (357)
T ss_dssp HHHHSSSEEEEEHHHHHTSSCHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9995799127970785467886999999999976879
|
| >d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Pepsin species: Mucor pusillus [TaxId: 4840]
Probab=100.00 E-value=0 Score=26865.66 Aligned_cols=1 Identities=0% Similarity=-1.290 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~Y~~~i~iGtP~Q~~~~ivDTGSs~~wv~~~~C~~~~~c~~~~~f~~~~SsT~~~~~~~~~~~y~~ 80 (357)
T d1mppa_ 1 GSVDTPGLYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGT 80 (357)
T ss_dssp CCEEEEEEEETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSSCCBCGGGCTTCEEEEEEEEEECSS
T ss_pred CCCCCCCEECCCCCEEEEEEEECCCCEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 95445525458798899999982899599999948975428714899998553589878874587622679445886588
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 g~~~G~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 160 (357)
T d1mppa_ 81 GGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLI 160 (357)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSHHHHHHSCCCCCHHHHHHHTTSS
T ss_pred CCEEEEEEEEECCCCCCEECCEEEEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 71789998350212660488688999994045423215655433211235545776422244688788789999861565
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~fs~~l~~~~~~G~l~~Gg~d~~~~~~~~~~~pi~~~~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~ilDSGts~~~ 240 (357)
T d1mppa_ 161 SSPVFSVYMNTNDGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQAFTIDTGTNFFI 240 (357)
T ss_dssp SSSEEEEECCCSSSEEEEEESSCCGGGBSSCCEEEECEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTCCSEE
T ss_pred CCCEEEEEECCCCCCCEEECCCCCHHHCCCCEEEEEECCCCCCCEEEEEEEEEEEECCEEEEECCCCCCEEEECCCCCCC
T ss_conf 55169998336899963987531766727730578721477874368998706998875765328973148613674236
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 lp~~~~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~c~~~~~~~~ 320 (357)
T d1mppa_ 241 APSSFAEKVVKAALPDATESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPDG 320 (357)
T ss_dssp EEHHHHHHHHHHHCTTCEEETTEEEEEHHHHTTCCCEEEEEEECTTCSSCEEEEEEEGGGGEEECSSSSCEEEESEEEES
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCCCCEEEEECHHHEEEEECCCCCEEEEEECCCC
T ss_conf 98999999999856775346885102420144568507999811565356679998659928996589988999984799
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------8
Q 001511 467 ------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------~ 467 (1064)
.
T Consensus 321 ~~~~ILG~~fl~~~yvvfD~~~~~iGfA~~~~~~~~~ 357 (357)
T d1mppa_ 321 GNQFIVGNLFLRFFVNVYDFGKNRIGFAPLASGYEND 357 (357)
T ss_dssp SSCCEEEHHHHTTEEEEEETTTTEEEEEEBCTTTCCC
T ss_pred CCCEEECHHHHCCEEEEEECCCCEEEEEECCCCCCCC
T ss_conf 9999945697397999998999999999998678998
|
| >d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Alkaline cellulase K catalytic domain species: Bacillus sp. [TaxId: 1409]
Probab=100.00 E-value=0 Score=26865.04 Aligned_cols=1 Identities=0% Similarity=-0.726 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~p~~a~~~~~l~~~G~~~l~d~~G~~v~lrGv~~~~~~w~~~~~~~~~~~~l~~~~G~N~VRlp~~~~~~~~ 80 (357)
T d1g01a_ 1 PAGMQAVKSPSEAGALQLVELNGQLTLAGEDGTPVQLRGMSTHGLQWFGEIVNENAFVALSNDWGSNMIRLAMYIGENGY 80 (357)
T ss_dssp CTTCTTCCCHHHHCSCEEEEETTEEEEECTTSCBCCCEEEEESCHHHHGGGCSHHHHHHHHTTSCCSEEEEEEESSSSST
T ss_pred CCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCEEEEEEEECCCCHHCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCC
T ss_conf 98544567965346788599738589999999999999885676200465568999999998649977988636557887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~ld~~V~~a~~~GiyVIlD~H~~~~~~~~~~~~~~~~~~W~~iA~ry~~~~~~~~v~~el~NEP~~~~~~~~ 160 (357)
T d1g01a_ 81 ATNPEVKDLVYEGIELAFEHDMYVIVDWHVHAPGDPRADVYSGAYDFFEEIADHYKDHPKNHYIIWELANEPSPNNNGGP 160 (357)
T ss_dssp TTCTTHHHHHHHHHHHHHHTTCEEEEEEECCSSSCTTSGGGTTHHHHHHHHHHHHTTCTTGGGEEEECCSCCCSCCTTSC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 44989999999999999978988998613268888880355666779999999975476237999987516353567654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~IR~~~~~~iiv~~~~w~~~~~~~~~~~~~~~nvvys~H~Y~~~~~~~~~~~~~~~~~~ 240 (357)
T d1g01a_ 161 GLTNDEKGWEAVKEYAEPIVEMLREKGDNMILVGNPNWSQRPDLSADNPIDAENIMYSVHFYTGSHGASHIGYPEGTPSS 240 (357)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHTCHHHHHHSCCSSSSEEEEEEEETTTSCCCCCCCCTTCCGG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHH
T ss_conf 56676136899999999999999853993499804876665200013557999779998872675677667777566447
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~g~Pv~vgEfG~~~~~~~~~~~~~~~~~~~~~~~~~~isw~~W~~~~~~~~~~~~~~~~~~~~~~~ 320 (357)
T d1g01a_ 241 ERSNVMANVRYALDNGVAVFATEWGTSQANGDGGPYFDEADVWLNFLNKHNISWANWSLTNKNEISGAFTPFELGRTDAT 320 (357)
T ss_dssp GCCCHHHHHHHHHHTTCCEEEEEEESSBTTTBSCCCHHHHHHHHHHHHHTTCCEEEEEECCSSSTTCSBCCCCTTSCCCC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78999999999997699889983377678887876789999999999974993589957588776433067665566754
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------8
Q 001511 467 ------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~~~w~~~~l~~sG~~v~~~l~g~~~~~~~~~ 357 (357)
T d1g01a_ 321 DLDPGANQVWAPEELSLSGEYVRARIKGIEYTPIDRT 357 (357)
T ss_dssp CSSCCTTCCCCGGGBCHHHHHHHHHHHTCCCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 5566667888765615467999998536778885789
|
| >d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: Adenosine deaminase (ADA) species: Plasmodium yoelii [TaxId: 5861]
Probab=100.00 E-value=0 Score=26867.22 Aligned_cols=1 Identities=0% Similarity=-2.022 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~lPK~eLH~HL~Gsi~~~~l~~la~~~~i~~~~~~~~~~~~~~~~~~~~~l~ 80 (357)
T d2amxa1 1 EIKFLKKEDVQNIDLNGMSKKERYEIWRRIPKVELHCHLDLTFSAEFFLKWARKYNLQPNMSDDEILDHYLFTKEGKSLA 80 (357)
T ss_dssp SCCCCCHHHHTTCCGGGCCHHHHHHHHHHSCEEECCBBGGGCCCHHHHHHHHHHTTCCTTSCHHHHHHHHCCCSTTCCHH
T ss_pred CCCHHHHCCCCCCCHHCCCCHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHH
T ss_conf 93455522555687000470789999983908898667878999999999999729799999499999874567626599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~f~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~v~y~Elr~~p~~~~~~~g~~~~~v~~~i~~g~~~a~~~~~~~~~~~ 160 (357)
T d2amxa1 81 EFIRKAISVSDLYRDYDFIEDLAKWAVIEKYKEGVVLMEFRYSPTFVSSSYGLDVELIHKAFIKGIKNATELLNNKIHVA 160 (357)
T ss_dssp HHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTTSSEEE
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999878778733899999999999999998415161133454324545676457799999999999987439845898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 l~~~~~~~~~~~~~~~~~~~a~~~~~~vvGidl~g~e~~~~~~~~~f~~ar~~gl~it~HaGE~~~~~~~~~i~~ai~~l 240 (357)
T d2amxa1 161 LICISDTGHAAASIKHSGDFAIKHKHDFVGFDHGGREIDLKDHKDVYHSVRDHGLHLTVHAGEDATLPNLNTLYTAINIL 240 (357)
T ss_dssp EEEECCCCCSHHHHHTTTHHHHHTTTTEEEEECCSSCCCCGGGHHHHHHHHHTTCEEEEEESCCTTCSSSHHHHHHHHTS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 63210266125557999999996388657312467766623469999999831876443455458999747899999704
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~RIgHGv~~~~d~~l~~~l~~~~I~leiCPtSN~~~~~~~~~~~HP~~~l~~~Gv~v~l~TDDp~~f~t~ls~ey~~~ 320 (357)
T d2amxa1 241 NVERIGHGIRVSESDELIELVKKKDILLEVCPISNLLLNNVKSMDTHPIRKLYDAGVKVSVNSDDPGMFLSNINDNYEKL 320 (357)
T ss_dssp CCSEEEECGGGGGCHHHHHHHHHHTCEEEECHHHHHHTTSSSCSTTCTHHHHHHTTCEEEECCBCHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHEECCHHHHHHHHHHCCEEEECCCCHHHHCCCCCCCCCHHHHHHHCCCEEEEECCCCHHHCCCHHHHHHHH
T ss_conf 97313652430058788998887185389887500242358970028999999889959995899412178879999999
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------8
Q 001511 467 ------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------~ 467 (1064)
=
T Consensus 321 ~~~~~ls~~el~~l~~nsi~~sF~~~~~K~~l~~~~~ 357 (357)
T d2amxa1 321 YIHLNFTLEEFMIMNNWAFEKSFVSDDVKSELKALYF 357 (357)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHC
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 9981989999999999999986899999999998659
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=26864.03 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (357)
T d1db3a_ 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (357)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCC
T ss_conf 98899968886899999999997869899997897555556688887403303897599982067979988887525987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~~~P~~~Y~~sK 160 (357)
T d1db3a_ 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAK 160 (357)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSHHHHHH
T ss_pred EEEEEECCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 89985203553446559999999999999999999998489988689999845651889888958999999988699999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a~~~~~ 240 (357)
T d1db3a_ 161 LYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMML 240 (357)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCEEECHHHHHHHHHH
T ss_conf 99999999999996997899996454599877677714789999999838972699799980444443044878999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 320 (357)
T d1db3a_ 241 QQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLL 320 (357)
T ss_dssp SSSSCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGGGCCCCC-CCCC
T ss_pred HCCCCCEEEECCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 27899759978998164599999999983976321455331000233211222433566760376155357886446404
Q ss_pred ------------------------------------E
Q ss_conf ------------------------------------8
Q 001511 467 ------------------------------------K 467 (1064)
Q Consensus 467 ------------------------------------~ 467 (1064)
+
T Consensus 321 ~d~skakk~LGw~P~~sl~egI~~~I~~~l~~~kk~~ 357 (357)
T d1db3a_ 321 GDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHS 357 (357)
T ss_dssp BCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 4889999997998689899999999999999970129
|
| >d16vpa_ d.180.1.1 (A:) Conserved core of transcriptional regulatory protein vp16 {Herpes simplex virus type 1 [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Conserved core of transcriptional regulatory protein vp16 superfamily: Conserved core of transcriptional regulatory protein vp16 family: Conserved core of transcriptional regulatory protein vp16 domain: Conserved core of transcriptional regulatory protein vp16 species: Herpes simplex virus type 1 [TaxId: 10298]
Probab=100.00 E-value=0 Score=26800.98 Aligned_cols=1 Identities=0% Similarity=-1.390 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~r~psPp~~~sp~~Ly~rLl~eL~F~eGp~Lls~le~wNeDLFSclP~n~dLY~~~~~LSt~~~eVi~~~~~~~p~~~~i 80 (356)
T d16vpa_ 1 SRMPSPPMPVPPAALFNRLLDDLGFSAGPALCTMLDTWNEDLFSALPTNADLYRECKFLSTLPSDVVEWGDAYVPERTQI 80 (356)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHTCTTHHHHHHHHHHCCCCCSTTSCCCGGGGTTCGGGCSCHHHHHHHHHHCCCCCSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
T ss_conf 99998988789799999999873998517899999984205550377874676531055389899999876179987750
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 dL~ahG~~~~P~~Pa~~eeLP~Yv~avq~fF~sELrAREe~Y~~Ll~~YC~AL~~yLr~sa~~~~r~~~~~~~~~~~~~~ 160 (356)
T d16vpa_ 81 DIRAHGDVAFPTLPATRDGLGLYYEALSRFFHAELRAREESYRTVLANFCSALYRYLRASVRQLHRQAHMRGRDRDLGEM 160 (356)
T ss_dssp CTTCCCSSCCCCCCSSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 01478998899999882353899999999999999998999999999999999999999887751310344541679999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~rq~i~~rYYRE~arLArllylHLYls~tRevswrl~A~Q~~~q~vF~~L~y~W~q~RQf~ClFhPvlfnhGvV~leg~p 240 (356)
T d16vpa_ 161 LRATIADRYYRETARLARVLFLHLYLFLTREILWAAYAEQMMRPDLFDCLCCDLESWRQLAGLFQPFMFVNGALTVRGVP 240 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHTTEEEEESCSHHHHSSCCSCSBCCSEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEECCCEEEECCEEEECCCC
T ss_conf 99999999999999999999999999999999999999986132634605740113432367535335417635667987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 L~a~~Lr~~Ny~R~eLGLPlvR~~lvEE~~~pL~~~P~fs~~~pRssGyl~~~IraKmeaYS~~hp~~~~~~~~dH~YaR 320 (356)
T d16vpa_ 241 IEARRLRELNHIREHLNLPLVRSAATEEPGAPLTTPPTLHGNQARASGYFMVLIRAKLDSYSSFTTSPSEAVMREHAYSR 320 (356)
T ss_dssp CCHHHHHHHHHHHHHTTCCCCBCTTTSCTTSCSCCCCCCCTTSCCHHHHHHHHHHHHHTSTTC-----------------
T ss_pred CCHHHHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 88899988889998718840110100468987425886556785305689999999864420368888875444576447
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------8
Q 001511 467 -----------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~~nYGst~eaml~~~~~~~p~~~~~~~~r~~~~ 356 (356)
T d16vpa_ 321 APTKNNYGSTIEGLLDLPDDDAPEEAGLAAPRLSFL 356 (356)
T ss_dssp ----------------------------CCCEEEEC
T ss_pred CCCCCCCCCCHHHCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 888888773232101699999635532234321359
|
| >d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Uroporphyrinogen decarboxylase, UROD domain: Uroporphyrinogen decarboxylase, UROD species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=26795.62 Aligned_cols=1 Identities=0% Similarity=1.167 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
|
T Consensus 1 ~~~~~ne~~l~al~g~~~dr~PVw~MrqAGRylpey~~~r~~~~f~e~~~~pe~~ae~tl~p~~~~~~DaaiifsDil~~ 80 (356)
T d1r3sa_ 1 FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTLQPLRRFPLDAAIIFSGILVV 80 (356)
T ss_dssp CCCCSCCHHHHHHHTCCCSSCCBCCTTSSSTTSHHHHHHHHTSCHHHHHTCHHHHHHHHHHHHHHSCCSCEECCCCTTHH
T ss_pred CCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 99764489999975998999998888445425889999871289999855999999998448986795425622442101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~ealG~~v~f~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~l~~v~eai~~~~~~l~~~~pliGf~ggP~Tla~yli~~~~ 160 (356)
T d1r3sa_ 81 PQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGG 160 (356)
T ss_dssp HHHTTCCCEEETTTEEECSSCCCSGGGGGGSCCGGGHHHHTHHHHHHHHHHHHHHTTSSCEEEEEECHHHHHHHHHHSSC
T ss_pred HHHCCCEEEECCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHCCC
T ss_conf 34228635644889866776433202332101100002144899999999998735565663032031888999872134
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~pe~~~~ll~~lt~~~~~~~~~qi~aGad~i~ifDs~a~~l~~~~~~~~~~~~~~~i~~~i~~~~~~ 240 (356)
T d1r3sa_ 161 SSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE 240 (356)
T ss_dssp CSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 21378898876303577889999999988999999860566540203520121357888888899999999999875101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~i~~~~~~~~~l~~~~~~g~d~is~D~~~~l~~~~~~~~~~i~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~ 320 (356)
T d1r3sa_ 241 AGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEIGQLVKQMLDDFGP 320 (356)
T ss_dssp TTCCCCCEEEEETTCGGGHHHHTTSSCSEEECCTTSCHHHHHHHHCSSSEEEEEECGGGGGSCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 24777302101044787888874248561254235799999998489832882888899859999999999999998189
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------8
Q 001511 467 -----------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------~ 467 (1064)
+
T Consensus 321 ~~~I~nlGhGI~p~tp~env~a~v~~vr~~~k~~~~ 356 (356)
T d1r3sa_ 321 HRYIANLGHGLYPDMDPEHVGAFVDAVHKHSRLLRQ 356 (356)
T ss_dssp SSEEEEESSCCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHHCHHHCC
T ss_conf 994896999759899999999999999996887459
|
| >d1lbqa_ c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Chelatase-like superfamily: Chelatase family: Ferrochelatase domain: Ferrochelatase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=26792.16 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 k~~tgVLL~nlGtP~s~~~V~~yL~~fl~D~~vi~~p~~~~~~l~~~I~~~R~~k~a~~Y~~IgggSPL~~~t~~qa~~l 80 (356)
T d1lbqa_ 1 RSPTGIVLMNMGGPSKVEETYDFLYQLFADNDLIPISAKYQKTIAKYIAKFRTPKIEKQYREIGGGSPIRKWSEYQATEV 80 (356)
T ss_dssp CCCEEEEEEECCCCSSGGGHHHHHHHHTTCCSSSCCCSSSHHHHHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99659999878899986899999999758986446878899998656475687999999998189881089999989999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~L~~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~ilvlPlyPqyS~sTt~s~~~~v~~~l~~~~~~~~~~~~~ 160 (356)
T d1lbqa_ 81 CKILDKTCPETAPHKPYVAFRYAKPLTAETYKQMLKDGVKKAVAFSQYPHFSYSTTGSSINELWRQIKALDSERSISWSV 160 (356)
T ss_dssp HHHHHHHCGGGCCEEEEEEESSSSSCHHHHHHHHHTTTCCEEEEEESCSSCCTTTHHHHHHHHHHHHHHHCTTCCSEEEE
T ss_pred HHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 98850233435772168873146320888999998579864378844234427888899999999988750102566426
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 I~~~~~~p~yI~a~a~~i~~~l~~~~~~~~~~~~LlfS~HgiP~~~~~~gdpY~~q~~~t~~~v~~~l~~~~~~~~~fQS 240 (356)
T d1lbqa_ 161 IDRWPTNEGLIKAFSENITKKLQEFPQPVRDKVVLLFSAHSLPMDVVNTGDAYPAEVAATVYNIMQKLKFKNPYRLVWQS 240 (356)
T ss_dssp ECCCTTCHHHHHHHHHHHHHHHHTSCSTTGGGCEEEEEEECCBHHHHTTTCSHHHHHHHHHHHHHHHTTTCSCEEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 44644312279999999999999767544567379995477653333327874689999999876430566645777640
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 r~g~~~WL~P~t~~~le~l~~g~k~v~v~p~gFvsD~lETL~Eidie~~~~~~gg~~f~~vp~lN~~p~fi~~La~lV~~ 320 (356)
T d1lbqa_ 241 QVGPKPWLGAQTAEIAEFLGPKVDGLMFIPIAFTSDHIETLHEIDLGVIGESEYKDKFKRCESLNGNQTFIEGMADLVKS 320 (356)
T ss_dssp CCSSSCBCSCBHHHHHHHHGGGCSCEEEECTTCSSCCHHHHTCCCCCCCTTCTTGGGEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 45677777875599999840489748998885242234449887777999971887499868998998999999999999
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------8
Q 001511 467 -----------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------~ 467 (1064)
+
T Consensus 321 ~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (356)
T d1lbqa_ 321 HLQSNQLYSNQLPLDFALGKSNDPVKDLSLVFGNHE 356 (356)
T ss_dssp HHHHCCSSCTTHHHHHHHCCCSSCCSCHHHHSBCCC
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 865685567446644334768871118698616899
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=0 Score=26791.78 Aligned_cols=1 Identities=100% Similarity=1.998 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~ 80 (356)
T d1rkxa_ 1 INNSFWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQP 80 (356)
T ss_dssp CCHHHHTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCHH
T ss_conf 97344188989997888779999999999779989999789986177776640146876998405685760023430202
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~y~~~k 160 (356)
T d1rkxa_ 81 EIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSK 160 (356)
T ss_dssp SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 44444421565653246775353322334035666643045543222222212234565433322234568988432432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~a 240 (356)
T d1rkxa_ 161 GCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSG 240 (356)
T ss_dssp HHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTTCEECCEETHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCHHCCCCCCEEEECCCCCEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCH
T ss_conf 33204566776521342010355733774267776488855143799999999718996688621342122123342200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~skak~~LGw~P~~~ 320 (356)
T d1rkxa_ 241 YLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPRWN 320 (356)
T ss_dssp HHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHHCCCCCCC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECHHHHHHHHCCCCCCC
T ss_conf 23455540345654444332222223322110245666787489862797179999875765686999999879986888
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------8
Q 001511 467 -----------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------~ 467 (1064)
.
T Consensus 321 l~egi~~ti~wyk~~~~~~~~~~~~~~~~~~~~~~~ 356 (356)
T d1rkxa_ 321 LNTTLEYIVGWHKNWLSGTDMHEYSITEINNYMNTK 356 (356)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 999999999999998748998998999999971589
|
| >d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: 3-isopropylmalate dehydrogenase, IPMDH species: Bacillus coagulans [TaxId: 1398]
Probab=100.00 E-value=0 Score=26791.71 Aligned_cols=1 Identities=0% Similarity=1.201 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 m~~rI~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~et~e~i~~~dail~Gav~~p~~~ 80 (356)
T d1v53a1 1 MKMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICRRSDAILLGAVGGPKWD 80 (356)
T ss_dssp CCEEEEEEEESTTHHHHHHHHHHHHHHHHTTSSCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 97079998878765999999999999998624997499999556899997499288999999986082799256798867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~lR~~ldlyanvRPv~~~~gi~~~~p~~~~~~~~vD~vivREnteg~Y~g~~~~~~~~~~~~~~~~~ 160 (356)
T d1v53a1 81 HNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLKRERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTL 160 (356)
T ss_dssp SSCGGGCHHHHHHHHHHHHTCCEEEEEEECCGGGTTTSSBCHHHHTTCEEEEEEECSSBTTTCSCEEEESSTTCEEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCEECCCCCCCCCCCC
T ss_conf 78988583021689998708725566665430344579977667788239996046766065305330224652002200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~t~~~~~ri~r~af~~A~~r~kkVt~v~K~nv~~~~~~~~~~~~eva~eyp~I~~~~~~vD~~~~~lv~~P~~fdViv~ 240 (356)
T d1v53a1 161 AYTREEIERIIEKAFQLAQIRRKKLASVDKANVLESSRMWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVT 240 (356)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTCHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEE
T ss_pred EEEEEEEEEHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHCCCCCCEEEC
T ss_conf 02321430034577767874598465775254102450586999999836898699998836678898722344664532
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~Nl~GDIlSDl~a~l~GglGl~~s~ni~~d~~a~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~~lg~~~~A~~i~~A 320 (356)
T d1v53a1 241 ENMFGDILSDEASVITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVLSAALMLRYSFGLEKEAAAIEKA 320 (356)
T ss_dssp CHHHHHHHHHHHTTTTSCTTSCEEEEECSSSCEEEEESSCCCGGGTTSSCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 67888888899988736763111200268731463378887234448996592999999999998637987999999999
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------8
Q 001511 467 -----------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------~ 467 (1064)
+
T Consensus 321 v~~~l~~g~~T~Dl~~~~gg~~~T~e~~dav~~~L~ 356 (356)
T d1v53a1 321 VDDVLQDGYCTGDLQVANGKVVSTIELTDRLIEKLN 356 (356)
T ss_dssp HHHHHHTTEESSSSCCTTCEECCHHHHHHHHHHHCC
T ss_pred HHHHHHCCCCCCCCCCCCCCEECHHHHHHHHHHHCC
T ss_conf 999998599473556679970379999999998429
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=26791.22 Aligned_cols=1 Identities=0% Similarity=0.636 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~e~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s~~~g~~~~~~~~~~~~ 80 (356)
T d1jnra2 1 VYYPKKYELYKADEVPTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTG 80 (356)
T ss_dssp CCCCSSCCCCCGGGSCEEEEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTTTTCEEEESCCCCSSS
T ss_pred CCCCCCHHHHCCCCCCCEEEECCEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 97775033213556776687649899898889999999999978867697999967889997359877899974233323
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~Ds~e~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (356)
T d1jnra2 81 RSERQNTLEDYVRYVTLDMMGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAA 160 (356)
T ss_dssp SBSCCCCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCBCBCTTSCBCBSSSSCEEEEETTHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHH
T ss_conf 56766899999999998606876188999988741123556876097742013323322333100246640788999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~i~~~~~~~~l~~~~~~~~~v~~~~~~~~~~G~~~~i~Ak~VILATGG~~~~~~~~~~~~~~~~~~~~~~~tG 240 (356)
T d1jnra2 161 KMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLLFRPRSTGEAAGRTWYAIFDTG 240 (356)
T ss_dssp HHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSCCSCCSGGGGCCSSCTTCBS
T ss_pred HHHHCCEEEEEEEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 86304517899999887653024665214568877404837984078799917875331357777644564447987577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 dG~~ma~~aGa~l~~~~~~q~~p~~~~~~~~~~~~~~~~~~~~~~~gl~~~g~~~~~~g~rf~~~~~~~g~~a~~~~~~~ 320 (356)
T d1jnra2 241 SGYYMGLKAGAMLTQAGFWVCGPEDLMPEEYAKLFPLKYNRMTTVKGLFAIGDCAGANPHKFSSGSFTEGRIAAKAAVRF 320 (356)
T ss_dssp HHHHHHHHHTCCEESCEECCCCCTTTCCHHHHTTCSSCCTTBCSSBTEEECGGGBCSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 09999998534524787247616645782432456567664004352121420017766557355655412328999999
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------8
Q 001511 467 -----------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------~ 467 (1064)
+
T Consensus 321 i~~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~~ 356 (356)
T d1jnra2 321 ILEQKPNPEIDDAVVEELKKKAYAPMERFMQYKDLS 356 (356)
T ss_dssp HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 972899887788999999988776899998507999
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=100.00 E-value=0 Score=26790.48 Aligned_cols=1 Identities=0% Similarity=-0.626 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~p~~~~~~~~~~~~~~~~~Rl~~R~LdLR~~~~~~ilr~Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~eg~~~~~~ 80 (356)
T d1l0wa3 1 TPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLV 80 (356)
T ss_dssp CCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHH
T ss_conf 96962685445654456698887413365117887999999999999999999988898999898124677764432002
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~yL~~Spel~lk~ll~~g~~~Vf~i~~~FRaE~~~t~H~~EFtmLE~e~~~~~~~~~m~~~E~li~~v~~~ 160 (356)
T d1l0wa3 81 PYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFRE 160 (356)
T ss_dssp ECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22113201117772856777775232368679982123522268754045668877666788878999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~f~r~~~~~a~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~ 240 (356)
T d1l0wa3 161 ALGVELPLPFPRLSYEEAMERYGSDKPDLRREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVR 240 (356)
T ss_dssp HTCCCCCSSCCEEEHHHHHHHHSSSSCCCSCCSCCEEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHHHCGGGCB
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHCCEEEEECCCCCCCHHHHCHHHCCCCCCE
T ss_conf 72877778977511776677870474767777566542036653113110012233437743687665100103888620
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 a~~FdL~~~G~ElanG~~r~~d~~~~~~r~~~~~~~~~~~~~~~~~yl~a~~~G~PP~~G~glGldRLlm~l~g~~~Ird 320 (356)
T d1l0wa3 241 ALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIRE 320 (356)
T ss_dssp BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSGGG
T ss_pred EEEEECCCCCEEEECCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHCCCCCHHH
T ss_conf 21230233878862107871748999999999767832357789999999667989962377709999999809995885
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------8
Q 001511 467 -----------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------~ 467 (1064)
-
T Consensus 321 vi~FPR~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~ 356 (356)
T d1l0wa3 321 VIAFPKNKEGKDPLTGAPSPVPEEQLRELGLMVVRP 356 (356)
T ss_dssp GSSSCCCTTSCBTTTTBSEECCHHHHHHHTEEECCC
T ss_pred EECCCCCCCCCCCCCCCCCCCCHHHHHHCCEEECCC
T ss_conf 346899999998667899989999998668462185
|
| >d1jaka1 c.1.8.6 (A:151-506) beta-N-acetylhexosaminidase {Streptomyces plicatus [TaxId: 1922]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: beta-N-acetylhexosaminidase species: Streptomyces plicatus [TaxId: 1922]
Probab=100.00 E-value=0 Score=26790.30 Aligned_cols=1 Identities=0% Similarity=0.038 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
|
T Consensus 1 f~~RG~mlD~aR~f~~~~~i~~~id~ma~~K~N~lh~Hl~D~~~~r~e~~~~p~l~~~ga~~~~~~~~~~~yT~~di~~i 80 (356)
T d1jaka1 1 YAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEI 80 (356)
T ss_dssp CSEEEEEEECSSSCCCHHHHHHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHH
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCEEECCCCHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 98438678767998599999999999998299079999864887610016873465436756667788885289999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 v~ya~~rgI~viPEid~PgH~~~~~~~~pel~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~v~~E~~~lfp~~~~Hi 160 (356)
T d1jaka1 81 VRYAASRHLEVVPEIDMPGHTNAALASYAELNCDGVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHI 160 (356)
T ss_dssp HHHHHHTTCEEEEECCCSSSCHHHHHHCGGGSTTSCCCCCCCSCCCSCCCCCTTCHHHHHHHHHHHHHHHHTCCSSEEEC
T ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999729868644777304679987584002568998644466778865566856789999999999987515507986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 GgDE~~~~~~~~~~~f~~~~~~~v~~~gk~~~~W~e~~~~~~~~~~vV~~W~~~~~~~~~~~~~~~~~~~G~~vI~s~~~ 240 (356)
T d1jaka1 161 GGDEAHSTPKADFVAFMKRVQPIVAKYGKTVVGWHQLAGAEPVEGALVQYWGLDRTGDAEKAEVAEAARNGTGLILSPAD 240 (356)
T ss_dssp CCCCCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGSCCCTTCEEEECCCTTSCHHHHHHHHHHHHTTCEEEECCTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEECCCC
T ss_conf 00244444078999999999999998599458740013678988867887730356763267999999809969977870
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~Yld~~~~~~~~~~~~w~~~~~~~~~y~~~P~~~~~~~~~~~ilG~e~~lWtE~i~~~~~~~~~~~PR~~AlAEr~Ws~ 320 (356)
T d1jaka1 241 RTYLDMKYTKDTPLGLSWAGYVEVQRSYDWDPAGYLPGAPADAVRGVEAPLWTETLSDPDQLDYMAFPRLPGVAELGWSP 320 (356)
T ss_dssp TTCTTBCSSTTCSSSBCTTCCCCHHHHHSCCGGGSSTTCCGGGEEEEEEEECCTTCCSHHHHHHHHTTHHHHHHHHHHSC
T ss_pred HHEECCCCCCCCCCCCCCCCEEEHHHEEECCCCCCCCCCCHHCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 12020366789987753345122311450366567874521056478855054777998999988775599999998688
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------8
Q 001511 467 -----------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~d~~~f~~RL~~~~~~l~~~Gv~y~r~p~~pw~ 356 (356)
T d1jaka1 321 ASTHDWDTYKVRLAAQAPYWEAAGIDFYRSPQVPWT 356 (356)
T ss_dssp GGGCCHHHHHHHHHTTHHHHHHHTCCCCCCTTSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 867999999999999999999779980679999999
|
| >d2ebsa2 b.69.13.1 (A:431-786) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=100.00 E-value=0 Score=26789.65 Aligned_cols=1 Identities=0% Similarity=-0.924 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~w~~~~~g~ee~~~~~l~spp~g~~l~s~~gd~~gf~~~dl~~p~~~~~~p~~~~~~~id~a~~~p~~ivr~G~~~~ 80 (356)
T d2ebsa2 1 WAPSWYLQIDGIEENAILSLRSPKSGAALLSGIGNISGMKHDDLTKPQKMFGAPQFSNLDSIDAAGNFPNVVVRAGSSGH 80 (356)
T ss_dssp CCCCEEECCTTCBCCBEEEEECCSSSSSEEEEESSSBCBEESCTTSCCCBCCSSCCSEEEEEEECSSCTTCEEEEEECCC
T ss_pred CCCCCEECCCCEEHHHEEEEECCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHEEEHHHCCCEEEEEECCCC
T ss_conf 99854576578010000015758999810688864785597458887535268885640120104118956999967788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~StDgG~TW~~~~~~~~g~~~~~~~~g~ia~s~dg~~ivw~~~~~~~~~gv~~StD~G~TW~~~~~~~~~ 160 (356)
T d2ebsa2 81 EYDSACARGAYATDGGDAWTIFPTCPPGMNASHYQGSTIAVDASGSQIVWSTKLDEQASGPWYSHDYGKTWSVPAGDLKA 160 (356)
T ss_dssp CBTTBCTTEEEESSSSSSEEECSCCCTTCSTTCCSCCEEEECTTSCCEEEECCCTTCCSCCEEESSTTSCCBCCEESCCS
T ss_pred CCCCCCCCEEEEECCHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCEEEECCCCCCEEECCCCCCC
T ss_conf 78888872799840522442787688886566446646999458993078731467886449970797113876777888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~i~~d~~~~~~~Ya~~~g~ly~StDgG~TW~~~~~~~~~~~~~~~~v~p~~~g~v~v~~~~~Gl~~StDgG~TWt~i 240 (356)
T d2ebsa2 161 QTANVLSDKVQDGTFYATDGGKFFVSTDGGKSYAAKGAGLVTGTSLMPAVNPWVAGDVWVPVPEGGLFHSTDFGASFTRV 240 (356)
T ss_dssp CCSCEEECSSSTTCEEEEETTEEEEESSTTSEEEECCBTCCCCCCCCCEECTTSTTCEEEEETTTEEEEESSTTSBCEEE
T ss_pred CCCEEEEECCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCEEEECCCCCEEEEC
T ss_conf 73189996767965785046319994787654532256775454036888741699502112445259922776348981
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~g~~~~~~~~GvyrS~D~G~TW~~Ind~~~~~g~~~~i~~Dp~~~grvYv 320 (356)
T d2ebsa2 241 GTANATLVSVGAPKSKSDGKKASAPSAVFIWGTDKPGSDIGLYRSDDNGSTWTRVNDQEHNYSGPTMIEADPKVYGRVYL 320 (356)
T ss_dssp SSCEEEEEEEEEEC---------CCEEEEEEEESSTTSCSEEEEESSTTSSCEECCCTTSCTTCEEEEEECTTSTTCEEE
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCEECCCCCCCCCCEEEEECCCCCCCEEEE
T ss_conf 47888764013333566454678875599999864798076999969997934995997777752289718976998999
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------8
Q 001511 467 -----------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------~ 467 (1064)
-
T Consensus 321 gT~GrGi~y~~~~~~~s~~~~~~~~~~~~~~~~~~~ 356 (356)
T d2ebsa2 321 GTNGRGIVYADLTNKKSNEEKSTAKCANGQKGTHCY 356 (356)
T ss_dssp EEBSSCEEEEECCC----CCCCEEEETTCCSSSCCC
T ss_pred EECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 968876799967788577887420127888887679
|
| >d1vbga1 c.1.12.2 (A:521-876) Pyruvate phosphate dikinase, C-terminal domain {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate phosphate dikinase, C-terminal domain domain: Pyruvate phosphate dikinase, C-terminal domain species: Maize (Zea mays) [TaxId: 4577]
Probab=100.00 E-value=0 Score=26789.00 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~~~~ad~~r~i~i~aNi~~~~e~~~a~~~gadGVGL~RtEflfl~~~~~~~~~~~~i~~p~~ee~~~~~~~~~~ 80 (356)
T d1vbga1 1 SGDLGTFMAWVDDVRKLKVLANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRQMIMAPTLELRQQALDRLLP 80 (356)
T ss_dssp SCHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCCSEEEEEHHHHHTTCHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCEEEHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 93488999987537764899858999999999847997171777888741886304678987629999999999998788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~q~~~y~~i~~~~~g~pvtiRtlD~~~dk~lp~~~~~~~~~~l~~~~g~dk~~~~~~~~~~~E~NP~LG~RGiR~~l~~p 160 (356)
T d1vbga1 81 YQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGNIEDIVSELCAETGANQEDALARIEKLSEVNPMLGFRGCRLGISYP 160 (356)
T ss_dssp HHHHHHHHHHHHTTTSEEEEECCCSCGGGGSCCSCHHHHHHHHHHHHCCCHHHHHHHHHHHCCSCGGGSSCTHHHHHHSH
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHCEEEEECHHHH
T ss_conf 78999999999748996699984278776676630567999999871998024554321334688432020455010211
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~f~~ql~Ail~A~~~~~~~~~~~~~~IMiPmV~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~iGiMiEvPsaal~~d~ 240 (356)
T d1vbga1 161 ELTEMQARAIFEAAIAMTNQGVQVFPEIMVPLVGTPQELGHQVTLIRQVAEKVFANVGKTIGYKVGTMIEIPRAALVADE 240 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCEEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEECSHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHH
T ss_conf 21357899999898744545756536550058763999999998887757888873066667435552357289997999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~DF~SIGTNDLtQytla~DRdn~~~~~~~y~~~~~~~~dp~~pav~~~i~~lI~~a~~~~k~~~~~i~vsiCGE~a 320 (356)
T d1vbga1 241 IAEQAEFFSFGTNDLTQMTFGYSRDDVGKFIPVYLAQGILQHDPFEVLDQRGVGELVKFATERGRKARPNLKVGICGEHG 320 (356)
T ss_dssp HTTTCSEEEECHHHHHHHHHTCCTTTGGGTHHHHHHTTSCSSCTTTSCCTTTHHHHHHHHHHHHHHHSTTCEEEEESGGG
T ss_pred HHHEEEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 96567899953038999999861310000026888630122587547789999999999999988507999699706434
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------8
Q 001511 467 -----------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------~ 467 (1064)
-
T Consensus 321 sdp~~~~~L~~lGi~~iS~sp~~ip~~k~a~aq~~~ 356 (356)
T d1vbga1 321 GEPSSVAFFAKAGLDYVSCSPFRVPIARLAAAQVLV 356 (356)
T ss_dssp GSHHHHHHHHHTTCSEEEECGGGHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCC
T ss_conf 799999999987999899890778999999977509
|
| >d1w8oa3 b.68.1.1 (A:47-402) Micromonospora sialidase, N-terminal domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Micromonospora sialidase, N-terminal domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=100.00 E-value=0 Score=26791.78 Aligned_cols=1 Identities=0% Similarity=-1.822 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~g~~g~~~~RiPslv~~~~G~lla~~~~r~~~~~d~~~~~i~~~rS~D~G~TWs~~~~v~~~~~~~~~ 80 (356)
T d1w8oa3 1 GEPLYTEQDLAVNGREGFPNYRIPALTVTPDGDLLASYDGRPTGIGAPGPNSILQRRSTDGGRTWGEQQVVSAGQTTAPI 80 (356)
T ss_dssp CCCCEEEEEEEETTSTTCSCEEEEEEEECTTSCEEEEEEECTTSCSTTSCCEEEEEEESSTTSSCCCCEEEECCBCSSSC
T ss_pred CCCCCCEEECCCCCCCCCEEEEECEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCC
T ss_conf 99741200110057688383670789998999999999646489988887329999906899787788873238887764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~v~~~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~ 160 (356)
T d1w8oa3 81 KGFSDPSYLVDRETGTIFNFHVYSQRQGFAGSRPGTDPADPNVLHANVATSTDGGLTWSHRTITADITPDPGWRSRFAAS 160 (356)
T ss_dssp BEEEEEEEEECTTTCCEEEEEEEESSCCTTTCCSCCCTTCTTSCEEEEEEESSTTSSCEEEECGGGSCCSTTCCEEEECS
T ss_pred CCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 34466248996899839999964035774443336787787479999983687652104652056655434432123466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 240 (356)
T d1w8oa3 161 GEGIQLRYGPHAGRLIQQYTIINAAGAFQAVSVYSDDHGRTWRAGEAVGVGMDENKTVELSDGRVLLNSRDSARSGYRKV 240 (356)
T ss_dssp EECEECCSSTTTTCEEEEEEEECTTSCEEEEEEEESSTTSSCEECCCBCSSCCSEEEEECTTSCEEEEECCTTCCSEEEE
T ss_pred CCCEEEEECCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEE
T ss_conf 32046000244664045553012236632577752688752001446675543316899257620255642555540577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~S~D~G~tw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~~S~D~G~tW~~~~~i~~~ 320 (356)
T d1w8oa3 241 AVSTDGGHSYGPVTIDRDLPDPTNNASIIRAFPDAPAGSARAKVLLFSNAASQTSRSQGTIRMSCDDGQTWPVSKVFQPG 320 (356)
T ss_dssp EEESSTTSCCCCCEEEEEEECSSCCCEEEESSTTCCTTCSGGGCEEEEEECCSSSSEEEEEEEESSTTSCCCEEEEEEEE
T ss_pred EEECCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCEECCCCCEECCC
T ss_conf 88426887543022014335788787326743665346789809999799998897316999990799155886081799
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------8
Q 001511 467 -----------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------~ 467 (1064)
-
T Consensus 321 ~~~Ys~~~~~~dg~i~~~ye~g~~~~~~~~~l~~~~ 356 (356)
T d1w8oa3 321 SMSYSTLTALPDGTYGLLYEPGTGIRYANFNLAWLG 356 (356)
T ss_dssp ECCCEEEEECTTSCEEEEECCSSEEEEEEECHHHHT
T ss_pred CCCCCEEEECCCCEEEEEEECCCCCEEEEEEHHHCC
T ss_conf 976863689589989999988997389996289979
|
| >d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Chitinase B, catalytic domain species: Serratia marcescens [TaxId: 615]
Probab=100.00 E-value=0 Score=26788.03 Aligned_cols=1 Identities=0% Similarity=-0.792 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
-
T Consensus 1 ~~~~~~~yy~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lTHi~yaFa~i~~~g~~~~~~~~~~~~~~~~~~~~~~lK 80 (356)
T d1goia2 1 TRKAVIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALK 80 (356)
T ss_dssp CCCEEEEEEECCHHHHHTCCSSCTTTCSSCGGGSCHHHHHHCSEEEEEEEEECTTSSEECCTTCCHHHHHHHHHHHHHGG
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHCCEEEEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98579999867745767624467766776720088404752994999879977996488258765267788999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~p~lKvllSiGGW~~s~~~~~~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGIDIDWE~P~~~~~~~~~~l~~el~ 160 (356)
T d1goia2 81 AHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNIDWEYPQAAEVDGFIAALQEIR 160 (356)
T ss_dssp GGCTTCEEEEEEECHHHHSTTSTTHHHHHHHTSSHHHHHHHHHHHHHHHHHHTCSEEEEECSCCCHHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 87889869999837767788765543067885899999999999999999829982446420135444455336899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~d~~~l~~~vD~invMtYD~~g~w~~~tg~~spLy~~~~~p~~~~~ 240 (356)
T d1goia2 161 TLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNA 240 (356)
T ss_dssp HHHHHHHHHTTCTTSCCEEEEEEESSHHHHTTTGGGHHHHHTTCSEEEEECCCSSCTTSSSCCCTTCSSBCTTSCCBCCG
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCC
T ss_conf 98778888746545543058840577777752104799863215746787302367888887887745477889733212
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~vsydd~~Si~~K~~y~~~~~LgGv~iW~l~~Dd~ 320 (356)
T d1goia2 241 LREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFDDAESFKYKAKYIKQQQLGGVMFWHLGQDNR 320 (356)
T ss_dssp GGGSSCCCCHHHHHHHCCSSBCCCHHHHHHHHHTSTTCCGGGEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECGGGSCT
T ss_pred CCCCCCCCCHHHCCCCCCCCCCEECCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 55444566765456566887522225899977986599843405882149999999999999957998999981488899
Q ss_pred -----------------------------------E
Q ss_conf -----------------------------------8
Q 001511 467 -----------------------------------K 467 (1064)
Q Consensus 467 -----------------------------------~ 467 (1064)
-
T Consensus 321 ~gsLl~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (356)
T d1goia2 321 NGDLLAALDRYFNAADYDDSQLDMGTGLRYTGVGPG 356 (356)
T ss_dssp TCHHHHHHHHHHHCTTCCCTTCCCCSCBCCCCCCTT
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCC
T ss_conf 967999987762687899653506788154178999
|
| >d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Gentisate 1,2-dioxygenase-like domain: Gentisate 1,2-dioxygenase species: Silicibacter pomeroyi [TaxId: 89184]
Probab=100.00 E-value=0 Score=26717.82 Aligned_cols=1 Identities=0% Similarity=-0.859 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~plw~~~~~~~p~~p~~~~~p~~w~~~~~~~~l~~~~~~~~~~~~~rr~~~l~np~~~~~~~ 80 (355)
T d3bu7a1 1 RDTPELEAYYDDLAKIETGALWTVANDIEPWEPTPKSAPVHWKWSDLRREVLRAIDLVRPEDAGRRVVYLRNPQRKDVSA 80 (355)
T ss_dssp CCCHHHHHHHHHHHHTTCCCGGGSCGGGSCSSCCCSSCCCEECHHHHHHHHHHHHHHSCSSCSSCCCEECCCGGGGGGTC
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCHHHCCEEEEEEECCCCCCCCC
T ss_conf 98578999999998768945110046778999998862216009999999998741168311770599960798778777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~t~~l~~~~q~l~PGe~~~~HrH~~~~~~~vi~G~g~~t~v~ge~~~~~~GD~~~~P~~~~H~h~n~~~~~~~~~l~~~D 160 (355)
T d3bu7a1 81 ACGWLFSGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGHKVELGANDFVLTPNGTWHEHGILESGTECIWQDGLD 160 (355)
T ss_dssp SBTTBEEEEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETTEEEEECTTCEEEECTTCCEEEEECTTCCCEEEEEEEC
T ss_pred CCCHHHHHEEEECCCCCCCCCCCCCCEEEEEEECCCEEEEECCEEEEEECCCEEEECCCCEEEEECCCCCCCEEEEEECC
T ss_conf 67204532076689983730115442048999898079989998877667999995899528622478997489998125
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~Pl~~~l~~~f~e~~p~~~~~~~~~~~~s~~~~~~~~~~p~~~~~~~~~sp~~~ypw~~~~~al~~~~~~~~~~~~~g~~ 240 (355)
T d3bu7a1 161 IPLTNCLEANFYEVHPNDYQTTDIPLNDSPLTYGGPALLPQLDKWDKPYSPLLKYSWEPTYEALLNYAKASDGSPYDGLI 240 (355)
T ss_dssp HHHHHHTTCCCEEECTTSSCCCCCCTTHHHHHHCSTTEEESSCCCCCSSCSCCEECHHHHHHHHHHHHTTCCCBTTTBEE
T ss_pred HHHHHHCCCEECCCCCHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEE
T ss_conf 67876326300125840014555787602455344565443456776668533366442167789898547888778559
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 l~y~nP~tg~~~~~ti~~~~~~l~pG~~~~~hrH~~~~v~~v~~G~g~~~i~g~~~~~~~GDv~~vP~~~~h~~~N~s~~ 320 (355)
T d3bu7a1 241 LRYTNPQTGGHPMLTMGASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIVGGKRFDWSEHDIFCVPAWTWHEHCNTQER 320 (355)
T ss_dssp EEECCTTTSSCSSSSCEEEEEEECTTCBCCCEEESSCEEEEEEECCEEEEETTEEEEECTTCEEEECTTCCEEEEECCSS
T ss_pred EEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEECCEEEEEECCCEEEECCCCCEEEECCCCC
T ss_conf 99646655577752016789997899705883735707999997849999999998862899899499984785558998
Q ss_pred ----------------------------------E
Q ss_conf ----------------------------------8
Q 001511 467 ----------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------~ 467 (1064)
-
T Consensus 321 e~~~Lf~~~D~P~~~~Lg~~~e~~~~~~~~~q~~~ 355 (355)
T d3bu7a1 321 DDACLFSFNDFPVMEKLGFWAEQALEDNGGHQIVA 355 (355)
T ss_dssp CCEEEEEEESHHHHHHTTCCCEEECCSTTTCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 86899995475999876167775411047976569
|
| >d1luca_ c.1.16.1 (A:) Bacterial luciferase alpha chain, LuxA {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Bacterial luciferase-like family: Bacterial luciferase (alkanal monooxygenase) domain: Bacterial luciferase alpha chain, LuxA species: Vibrio harveyi [TaxId: 669]
Probab=100.00 E-value=0 Score=26716.79 Aligned_cols=1 Identities=0% Similarity=1.433 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 M~fg~f~~~~~~~~~~~~~~~~~~~~~a~~ae~~Gf~~~~~~ehh~~~~~~~~~p~~~~a~~a~~T~~I~lgt~v~~~~~ 80 (355)
T d1luca_ 1 MKFGNFLLTYQPPELSQTEVMKRLVNLGKASEGCGFDTVWLLEHHFTEFGLLGNPYVAAAHLLGATETLNVGTAAIVLPT 80 (355)
T ss_dssp CEEEEEECCCCCTTCCHHHHHHHHHHHHHHTGGGTCSEEEECCCCSBTTBCCSCHHHHHHHHHHHCSSCEEEEEEEEGGG
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 91357668879999799999999999999999879989996235788877767999999999996791068542367887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~P~~~A~~~atLd~ls~GR~~lGig~G~~~~~~~~~G~~~~~~~~~~~E~~~il~~l~~~~~~~~~G~~~~~~~~~~~P 160 (355)
T d1luca_ 81 AHPVRQAEDVNLLDQMSKGRFRFGICRGLYDKDFRVFGTDMDNSRALMDCWYDLMKEGFNEGYIAADNEHIKFPKIQLNP 160 (355)
T ss_dssp SCHHHHHHHHHHHHHHHTSCEEEEEECCCCHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHSEEEEESSSCEEEEEECSS
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 65999999998887626997146542034300343210121001101578888887520243322222344444322366
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~p~q~~~~Pi~~a~~sp~~~~~Aa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gr~~~~~~~~~~~~~~v~~~~e~A~ 240 (355)
T d1luca_ 161 SAYTQGGAPVYVVAESASTTEWAAERGLPMILSWIINTHEKKAQLDLYNEVATEHGYDVTKIDHCLSYITSVDHDSNRAK 240 (355)
T ss_dssp CCSSTTSSCEEECCCSHHHHHHHHHTTCCBEECSSSCHHHHHHHHHHHHHHHHHTTCCGGGCCCEEEEECEECSSHHHHH
T ss_pred CCCCCCCCCCCHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 43567888620120322789999985067644354203331127899999887622454333210010011467799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGtpe~v~~~l~~~~e~~Gv 320 (355)
T d1luca_ 241 DICRNFLGHWYDSYVNATKIFDDSDQTKGYDFNKGQWRDFVLKGHKDTNRRIDYSYEINPVGTPEECIAIIQQDIDATGI 320 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-----------------------------CCSGGGGGSSEESHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHCC
T ss_conf 99999999999986421013576132125421102344555403501678887427741564899999999999997599
Q ss_pred ----------------------------------E
Q ss_conf ----------------------------------8
Q 001511 467 ----------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------~ 467 (1064)
+
T Consensus 321 d~~~l~~~~~~~~~~~~~sl~lfae~V~P~lr~~~ 355 (355)
T d1luca_ 321 DNICCGFEANGSEEEIIASMKLFQSDVMPYLKEKQ 355 (355)
T ss_dssp CEEEEECGGGCSHHHHHHHHHHHHHHTGGGCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 97999788999999999999999984101124899
|
| >d1fuia2 c.85.1.1 (A:1-355) L-fucose isomerase, N-terminal and second domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FucI/AraA N-terminal and middle domains superfamily: FucI/AraA N-terminal and middle domains family: L-fucose isomerase, N-terminal and second domains domain: L-fucose isomerase, N-terminal and second domains species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=26718.72 Aligned_cols=1 Identities=0% Similarity=0.968 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~pkiGirp~~Dgr~~~~re~le~~t~~~ak~~a~~l~~~l~~~~g~~ve~V~~d~~i~~~~eA~~~aekf~~~~v 80 (355)
T d1fuia2 1 MKKISLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALLTEKLRHACGAAVECVISDTCIAGMAEAAACEEKFSSQNV 80 (355)
T ss_dssp CCSCSCCEEEEEEBCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHCBCTTSCBCCEEECSSCBCSHHHHHHHHHHHHTTTE
T ss_pred CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 98678980677853356504432038999999999999999987412689976999467516886999999999866598
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 d~~i~v~p~w~~~~~~~~~~~~~p~~vw~fn~~erpG~vgl~a~~aa~~q~Gip~~~iyg~~vqd~~d~~~p~dv~ekll 160 (355)
T d1fuia2 81 GLTITVTPCWCYGSETIDMDPTRPKAIWGFNGTERPGAVYLAAALAAHSQKGIPAFSIYGHDVQDADDTSIPADVEEKLL 160 (355)
T ss_dssp EEEEEEESSCCCHHHHSCCCSSSCEEEEECBCSSSBHHHHHHHHHHHHHHTTCCCEEEECSSCCCTTCCCCCHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 77999825546615545314799866882689999868999999999986598734760776668754226699999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~faRAa~av~~Lrg~~ig~iG~~~mGm~~~~~d~~~l~~~fGi~ve~iDm~El~rr~e~~i~D~eEv~~Al~w~k~~~~~ 240 (355)
T d1fuia2 161 RFARAGLAVASMKGKSYLSLGGVSMGIAGSIVDHNFFESWLGMKVQAVDMTELRRRIDQKIYDEAELEMALAWADKNFRY 240 (355)
T ss_dssp HHHHHHHHHHHHTTCEEEEESSCSTTCGGGSCCHHHHHHHHCCEEEEECTHHHHHHHHTTCSCHHHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999999998658927887785677441257999999983995278759999999974689999999999999973302
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 g~d~n~~~~~~~~~~~~e~~e~~vkm~~~~rdlm~~n~~l~~~~~~ee~~g~~aia~gfqgqr~wtd~~p~~d~~ea~LN 320 (355)
T d1fuia2 241 GEDENNKQYQRNAEQSRAVLRESLLMAMCIRDMMQGNSKLADIGRVEESLGYNAIAAGFQGQRHWTDQYPNGDTAEAILN 320 (355)
T ss_dssp CCCCSCGGGCCCHHHHHHHHHHHHHHHHHHHHHHHCCTHHHHTTCHHHHTCCCEEEEEECCTTTTTTTSCCSHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHCCCCCEEEEECCCCHHHCCCCCCHHHHHHHC
T ss_conf 41357512477776759899999999999999985081034414157656888425531245202103655107899857
Q ss_pred ----------------------------------E
Q ss_conf ----------------------------------8
Q 001511 467 ----------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------~ 467 (1064)
+
T Consensus 321 s~~dwnG~rep~~~AtE~D~~~altMl~~~lLTgt 355 (355)
T d1fuia2 321 SSFDWNGVREPFVVATENDSLNGVAMLMGHQLTGT 355 (355)
T ss_dssp SSEETTEECCCCCEEETTCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 84444787686336633340108999999875089
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=26714.69 Aligned_cols=1 Identities=0% Similarity=-0.726 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~~~~~~~~~~~f~i~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~ 80 (355)
T d2b1pa1 1 NQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIS 80 (355)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred CCCEEEEECCCCEEECCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99879995894045337759988962175859999999999989999998823369799999999999998648987648
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~f~~~~~~~~~~~~~iv~Ey~~~~l~~~~~~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl 160 (355)
T d2b1pa1 81 LLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKI 160 (355)
T ss_dssp CSEEECSCCSTTTCCEEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEE
T ss_pred EEEEEECCCCCCCCCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 99897025643457626999841446778765038999999999999999998865221124567763211365443132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~df~~~~~~~~~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~ 240 (355)
T d2b1pa1 161 LDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPE 240 (355)
T ss_dssp CCCCC---------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHH
T ss_pred ECHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHH
T ss_conf 01023211466655332214655558133147777877433356625789865989988897788999999720589879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~Hpw~~~~~~~ 320 (355)
T d2b1pa1 241 FMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 320 (355)
T ss_dssp HHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGGCCH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCCCCCC
T ss_conf 99876566777764175435666421264333543210133379999999999876994579089999669420878881
Q ss_pred ----------------------------------E
Q ss_conf ----------------------------------8
Q 001511 467 ----------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355)
T d2b1pa1 321 AEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMN 355 (355)
T ss_dssp HHHTCCCC-------CCCCCCHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCC
T ss_conf 00458999877702332415999999999998629
|
| >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Cystathionine beta-synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=26714.49 Aligned_cols=1 Identities=0% Similarity=-0.924 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~IG~TPLv~l~~ls~~~G~~~~i~~K~E~~nptGSfKdRg 80 (355)
T d1jbqa_ 1 WIRPDAPSRCTWQLGRPASESPHHHTAPAKSPKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRI 80 (355)
T ss_dssp CCCTTSCCCCCCCTTSCGGGCCSCCCCCCCCCSEESSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHH
T ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEECCCHHHHHCCCCEEEEEECCCCCCCCHHHHH
T ss_conf 98899998865548986888997666776556410318775489973788643277599977999977889755979999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 a~~~i~~a~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~ 160 (355)
T d1jbqa_ 81 SLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPES 160 (355)
T ss_dssp HHHHHHHHHHHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CC
T ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCEEEEECCCCCCHHHHH
T ss_conf 99999999972886667669972555400488999986257708996123168899999844976999216643101555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~vep 240 (355)
T d1jbqa_ 161 HVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDP 240 (355)
T ss_dssp HHHHHHHHHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 34699999973356513444576532001005650034441389998568622587037788888752487536986325
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~gs~~~~~~~~~~~~~~~~~i~gi~~~~~~~~~~~~~~~~~~~v~D~ea~~~~~~L~~~eGi~vepSsaa~laa~l~~~~ 320 (355)
T d1jbqa_ 241 EGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQ 320 (355)
T ss_dssp TTCSCSSSGGGGCCSCCCCSCCSCCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBCHHHHHHHHHHHHHGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHH
T ss_conf 67720133333322334522355456620111100120220358989999999999998095982899999999999977
Q ss_pred ----------------------------------E
Q ss_conf ----------------------------------8
Q 001511 467 ----------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------~ 467 (1064)
-
T Consensus 321 ~~~~g~~VVvvlcd~G~kY~s~~~~d~~~~~~~~~ 355 (355)
T d1jbqa_ 321 ELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFL 355 (355)
T ss_dssp GCCTTCEEEEEECBBGGGGTTTTTCHHHHHHTTCC
T ss_pred HCCCCCEEEEEECCCCCCCCCCCCCHHHHHHCCCC
T ss_conf 60896989999777976235642689999877899
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=26713.09 Aligned_cols=1 Identities=0% Similarity=0.702 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
|
T Consensus 1 ~~p~~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 1 FVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD 80 (355)
T ss_dssp CCCEEEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEE
T ss_pred CCCCCEEECCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCC
T ss_conf 98875888983788699999889999999189909999899993999997899988999986999999996452443211
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d1nexb2 81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 160 (355)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEEC
T ss_conf 11111111110011111111111112322045543888689998567730012465200010000011234012101100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 240 (355)
T d1nexb2 161 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 240 (355)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred CCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCC
T ss_conf 22210000256334421144204443013110001100012332111111210021012456368763012211111111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~ 320 (355)
T d1nexb2 241 GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANI 320 (355)
T ss_dssp CCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCT
T ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCCEEEEEE
T ss_conf 11111111123210033320111111111111110001246882299998499989999809979999999997988884
Q ss_pred ----------------------------------E
Q ss_conf ----------------------------------8
Q 001511 467 ----------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------~ 467 (1064)
+
T Consensus 321 ~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~dfs 355 (355)
T d1nexb2 321 LKDADQIWSVNFKGKTLVAAVEKDGQSFLEILDFS 355 (355)
T ss_dssp TTTCSEEEEEEEETTEEEEEEESSSCEEEEEEECC
T ss_pred CCCCCCEEEEEECCCEEEEEEECCCCEEEEEEECC
T ss_conf 58999899999839919999989890999999588
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=0 Score=26711.76 Aligned_cols=1 Identities=0% Similarity=-1.689 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~~p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 1 DEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEE
T ss_conf 99717476589999999982664777671999999999499999899998569948999999996777642015899989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d2bbkh_ 81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT 160 (355)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred EEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCC
T ss_conf 99999999798898058864031179873499933887157732798820454305788376677058740473069963
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 240 (355)
T d2bbkh_ 161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA 240 (355)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred EEEECCCCCEEEEEECCCCEEEEEECCCCCCEECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCC
T ss_conf 69993899989998347873799962433300011061021538997388746998299996589907998445784412
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 ~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~ 320 (355)
T d2bbkh_ 241 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST 320 (355)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEET
T ss_pred EEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEEEC
T ss_conf 68543303510899980799767887406871265179975999867888498996689987799992899969999978
Q ss_pred ----------------------------------E
Q ss_conf ----------------------------------8
Q 001511 467 ----------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------~ 467 (1064)
-
T Consensus 321 ~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 321 GDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355 (355)
T ss_dssp TTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCEEEECCCC
T ss_conf 99989999999998999992869796589969999
|
| >d1iq8a1 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine transglycosylase, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: tRNA-guanine transglycosylase family: tRNA-guanine transglycosylase domain: Archaeosine tRNA-guanine transglycosylase, N-terminal domain species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=26714.44 Aligned_cols=1 Identities=0% Similarity=-0.294 Sum_probs=0.0
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 001511 466 L------------------------------------------------------------------------------- 466 (1064)
Q Consensus 466 l------------------------------------------------------------------------------- 466 (1064)
=
T Consensus 1 ~m~~F~i~~~d~~AR~G~l~~~~g~i~TP~fmpv~t~~~v~~~p~~l~~~g~~iil~NtYhl~~~p~~~~~~~~gGLh~F 80 (355)
T d1iq8a1 1 KMLKFEIKARDGAGRIGKLEVNGKKIETPAIMPVVNPKQMVVEPKELEKMGFEIIITNSYIIYKDEELRRKALELGIHRM 80 (355)
T ss_dssp CCEEEEEEEEETTEEEEEEEETTEEEEESEEEEBCCSSSCSSCHHHHHHTTCCEEEEEHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCCCEEEEEECCEEEECCCEEEEECCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCCEEEECCCCHHHH
T ss_conf 95689998611772248999699666089155654587401489999983899892111306789873443124770443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 81 ~~w~~~ilTDSGgfQv~sl~~~~~~~e~~i~~q~~lgsDI~m~lD~~~~~~~~~~~~~~s~~rt~~~~~~~~~~~~~~~~ 160 (355)
T d1iq8a1 81 LDYNGIIEVDSGSFQLMKYGSIEVSNREIIEFQHRIGVDIGTFLDIPTPPDAPREQAVKELEITLSRAREAEEIKEIPMN 160 (355)
T ss_dssp HTCCSEEEEECSTTHHHHSSCCSSCHHHHHHHHHHTTCSBBCCCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHCCSCBB
T ss_pred HCCCCCEECCCCCCEEECCCHHHHHHHHHHEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 02789623055663121120011244566201204576179840346787777999999999999988887653205642
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 161 givqGG~~~dLR~~sa~~l~~~~~dG~aiGG~~~~~~~~~~~~~~~~i~~~~~~Lp~~kPrylmGvG~P~di~~~v~~Gi 240 (355)
T d1iq8a1 161 ATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVVPLLESYRFRDVVDIVISSKMALRPDRPVHLFGAGHPIVFALAVAMGV 240 (355)
T ss_dssp CCBCCTTCHHHHHHHHHHHHHSCCSBEEECSCHHHHHTTCHHHHHHHHHHHHHHSCTTSCEEETTCCCGGGHHHHHHTTC
T ss_pred CEECCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHCC
T ss_conf 00012257317699986654178103201166765204789999998864101486336444137887567999998558
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001511 467 -------------------------------------------------------------------------------- 466 (1064)
Q Consensus 467 -------------------------------------------------------------------------------- 466 (1064)
T Consensus 241 D~FD~~~p~r~ar~g~~~t~~g~~~l~~~d~~pC~C~~C~~~srayl~HL~~~~e~~LltiHNl~~~~~l~~~iR~aI~~ 320 (355)
T d1iq8a1 241 DLFDSASYALYAKDDRYMTPEGTKRLDELDYFPCSCPVCSKYTPQELREMPKEERTRLLALHNLWVIKEEIKRVKQAIKE 320 (355)
T ss_dssp CEEEESHHHHHHHTTEEEETTEEEEGGGCSSCCCCSTTTTTCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 96520588887640332157885235411013457852140589999976346488999999999999999999999985
Q ss_pred ----------------------------------E
Q ss_conf ----------------------------------8
Q 001511 467 ----------------------------------K 467 (1064)
Q Consensus 467 ----------------------------------~ 467 (1064)
+
T Consensus 321 g~f~~~~e~~~~~~p~~~~~~~~l~~~~~~~~~~~ 355 (355)
T d1iq8a1 321 GELWRLVDERARSHPKLYSAYKRLLEHYTFLEEFE 355 (355)
T ss_dssp TCHHHHHHHHHTTCHHHHHHHHHHHHCHHHHHHHS
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999869999999999998888875019
|